Query 038133
Match_columns 671
No_of_seqs 470 out of 3530
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0333 U5 snRNP-like RNA heli 100.0 6E-133 1E-137 1032.1 48.7 568 93-670 96-673 (673)
2 KOG0331 ATP-dependent RNA heli 100.0 1.7E-74 3.7E-79 617.5 34.4 385 252-655 92-482 (519)
3 KOG0341 DEAD-box protein abstr 100.0 3.4E-74 7.3E-79 575.0 21.1 422 209-648 127-556 (610)
4 KOG0336 ATP-dependent RNA heli 100.0 7.7E-71 1.7E-75 554.3 31.7 410 220-649 181-600 (629)
5 KOG0330 ATP-dependent RNA heli 100.0 2E-70 4.4E-75 550.3 31.9 369 249-642 59-430 (476)
6 PTZ00110 helicase; Provisional 100.0 1.6E-68 3.4E-73 600.4 48.2 412 219-650 97-513 (545)
7 KOG0339 ATP-dependent RNA heli 100.0 2E-69 4.4E-74 556.8 33.8 410 219-648 191-602 (731)
8 PLN00206 DEAD-box ATP-dependen 100.0 9.6E-68 2.1E-72 592.3 45.7 407 223-648 93-502 (518)
9 COG0513 SrmB Superfamily II DN 100.0 2.6E-66 5.7E-71 577.1 42.5 372 251-645 29-408 (513)
10 KOG0335 ATP-dependent RNA heli 100.0 4.7E-67 1E-71 550.8 33.4 399 238-649 61-472 (482)
11 KOG0338 ATP-dependent RNA heli 100.0 6.9E-66 1.5E-70 531.6 27.5 362 250-633 180-545 (691)
12 KOG0328 Predicted ATP-dependen 100.0 1.6E-64 3.5E-69 487.6 28.7 379 244-647 20-399 (400)
13 KOG0334 RNA helicase [RNA proc 100.0 1.6E-64 3.5E-69 564.7 32.9 409 220-648 333-747 (997)
14 PRK04837 ATP-dependent RNA hel 100.0 6.4E-62 1.4E-66 534.9 43.0 373 249-637 6-378 (423)
15 KOG0326 ATP-dependent RNA heli 100.0 8.3E-64 1.8E-68 489.9 19.5 368 252-645 86-453 (459)
16 PRK11776 ATP-dependent RNA hel 100.0 2.2E-60 4.8E-65 528.3 43.0 361 250-636 3-364 (460)
17 PRK10590 ATP-dependent RNA hel 100.0 3.5E-60 7.5E-65 524.9 42.4 366 252-636 2-367 (456)
18 PRK11634 ATP-dependent RNA hel 100.0 4.1E-60 8.8E-65 536.9 43.2 360 251-635 6-366 (629)
19 PRK04537 ATP-dependent RNA hel 100.0 6.3E-60 1.4E-64 532.5 43.5 370 251-636 9-379 (572)
20 KOG0345 ATP-dependent RNA heli 100.0 1E-59 2.2E-64 483.0 35.0 354 252-627 5-370 (567)
21 KOG0340 ATP-dependent RNA heli 100.0 5E-60 1.1E-64 470.2 29.1 365 249-638 5-378 (442)
22 PRK11192 ATP-dependent RNA hel 100.0 1.8E-58 3.8E-63 509.7 43.5 364 252-636 2-367 (434)
23 KOG0342 ATP-dependent RNA heli 100.0 2E-59 4.4E-64 484.4 30.9 360 251-631 82-447 (543)
24 PRK01297 ATP-dependent RNA hel 100.0 2.4E-57 5.2E-62 505.4 45.6 383 249-647 85-470 (475)
25 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-57 2.4E-62 474.6 30.5 354 251-626 69-427 (758)
26 KOG0348 ATP-dependent RNA heli 100.0 4.6E-57 9.9E-62 468.8 30.4 382 247-634 132-567 (708)
27 PTZ00424 helicase 45; Provisio 100.0 8.4E-56 1.8E-60 484.1 41.6 371 250-645 27-398 (401)
28 KOG0346 RNA helicase [RNA proc 100.0 1E-56 2.3E-61 456.9 29.4 367 251-636 19-425 (569)
29 KOG0344 ATP-dependent RNA heli 100.0 7.4E-56 1.6E-60 468.3 26.2 397 233-648 114-522 (593)
30 KOG0347 RNA helicase [RNA proc 100.0 2.7E-56 5.8E-61 464.4 16.9 378 247-637 177-586 (731)
31 KOG0332 ATP-dependent RNA heli 100.0 4.2E-54 9E-59 430.2 28.7 373 249-649 88-473 (477)
32 KOG0327 Translation initiation 100.0 1.9E-53 4E-58 429.9 25.0 369 251-646 26-395 (397)
33 KOG0337 ATP-dependent RNA heli 100.0 1.8E-52 4E-57 424.1 19.9 363 251-637 21-384 (529)
34 TIGR03817 DECH_helic helicase/ 100.0 9.9E-50 2.1E-54 460.5 38.9 354 257-636 20-403 (742)
35 KOG4284 DEAD box protein [Tran 100.0 3.6E-51 7.9E-56 431.7 24.2 354 244-623 18-381 (980)
36 KOG0350 DEAD-box ATP-dependent 100.0 3.8E-49 8.2E-54 407.5 25.6 369 260-635 146-554 (620)
37 PLN03137 ATP-dependent DNA hel 100.0 2.3E-47 4.9E-52 437.6 38.6 336 252-624 436-790 (1195)
38 TIGR00580 mfd transcription-re 100.0 2.6E-46 5.7E-51 435.8 40.6 354 190-622 404-771 (926)
39 TIGR00614 recQ_fam ATP-depende 100.0 1.6E-46 3.5E-51 417.1 37.0 322 268-629 6-341 (470)
40 PRK10689 transcription-repair 100.0 1.7E-45 3.6E-50 437.7 41.6 354 190-621 553-919 (1147)
41 PRK11057 ATP-dependent DNA hel 100.0 3.7E-45 8E-50 416.7 38.8 328 259-627 10-349 (607)
42 PRK02362 ski2-like helicase; P 100.0 3E-45 6.5E-50 427.4 33.9 376 252-661 2-442 (737)
43 TIGR01389 recQ ATP-dependent D 100.0 1.6E-44 3.6E-49 412.3 37.0 316 269-625 9-335 (591)
44 PRK00254 ski2-like helicase; P 100.0 4.2E-44 9.2E-49 416.7 35.6 373 252-661 2-432 (720)
45 PRK13767 ATP-dependent helicas 100.0 2.5E-43 5.4E-48 415.1 37.5 344 257-620 17-397 (876)
46 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.2E-43 1.1E-47 397.1 35.0 316 269-620 12-390 (844)
47 PRK10917 ATP-dependent DNA hel 100.0 5.3E-42 1.1E-46 394.8 39.9 353 261-659 249-625 (681)
48 KOG0329 ATP-dependent RNA heli 100.0 3E-44 6.6E-49 342.4 14.3 333 251-643 42-378 (387)
49 TIGR00643 recG ATP-dependent D 100.0 2.9E-41 6.4E-46 386.2 40.1 357 260-659 223-602 (630)
50 PRK01172 ski2-like helicase; P 100.0 9.5E-42 2.1E-46 395.2 32.6 370 252-660 2-421 (674)
51 COG1197 Mfd Transcription-repa 100.0 8.3E-42 1.8E-46 389.6 30.4 363 189-623 546-915 (1139)
52 PRK12898 secA preprotein trans 100.0 1.5E-39 3.3E-44 361.7 35.7 335 269-623 100-588 (656)
53 PRK09401 reverse gyrase; Revie 100.0 1.8E-39 3.9E-44 387.0 35.2 315 269-607 77-430 (1176)
54 COG1201 Lhr Lhr-like helicases 100.0 3.9E-39 8.4E-44 363.7 33.9 340 257-620 7-361 (814)
55 PHA02653 RNA helicase NPH-II; 100.0 2.3E-39 4.9E-44 365.9 32.1 311 276-624 167-517 (675)
56 COG0514 RecQ Superfamily II DN 100.0 2.2E-39 4.9E-44 353.6 30.7 329 264-629 7-345 (590)
57 PRK09200 preprotein translocas 100.0 3.2E-38 7E-43 358.2 35.6 336 269-623 75-543 (790)
58 PRK14701 reverse gyrase; Provi 100.0 1.3E-38 2.7E-43 386.9 33.4 334 261-617 67-452 (1638)
59 PRK09751 putative ATP-dependen 100.0 2E-38 4.3E-43 378.7 34.4 306 293-615 1-379 (1490)
60 TIGR00963 secA preprotein tran 100.0 2.9E-37 6.4E-42 344.9 34.8 336 269-624 53-520 (745)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.6E-37 3.4E-42 359.0 33.6 300 280-622 9-337 (819)
62 TIGR03714 secA2 accessory Sec 100.0 4E-37 8.6E-42 346.1 34.6 334 274-623 69-539 (762)
63 COG1111 MPH1 ERCC4-like helica 100.0 1E-36 2.2E-41 318.6 32.6 324 271-624 13-484 (542)
64 PRK11664 ATP-dependent RNA hel 100.0 3.6E-37 7.9E-42 356.7 30.2 300 280-622 12-340 (812)
65 PHA02558 uvsW UvsW helicase; P 100.0 5.4E-37 1.2E-41 342.7 30.2 300 271-612 112-443 (501)
66 TIGR01054 rgy reverse gyrase. 100.0 5E-36 1.1E-40 358.0 35.2 305 265-593 70-409 (1171)
67 TIGR01587 cas3_core CRISPR-ass 100.0 1.7E-36 3.7E-41 326.6 27.6 300 290-622 1-337 (358)
68 COG1202 Superfamily II helicas 100.0 4.1E-36 8.9E-41 315.0 24.0 338 253-621 196-553 (830)
69 KOG0349 Putative DEAD-box RNA 100.0 7.2E-37 1.6E-41 310.6 17.7 296 326-632 285-626 (725)
70 PRK13766 Hef nuclease; Provisi 100.0 2.5E-34 5.4E-39 339.2 38.7 322 272-623 14-481 (773)
71 COG1200 RecG RecG-like helicas 100.0 2.5E-34 5.4E-39 312.8 32.9 332 262-636 252-606 (677)
72 COG1204 Superfamily II helicas 100.0 7.6E-35 1.7E-39 333.4 28.4 336 257-622 15-409 (766)
73 KOG0952 DNA/RNA helicase MER3/ 100.0 1.4E-34 3.1E-39 321.5 25.5 371 269-659 106-529 (1230)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 3.7E-33 8.1E-38 298.7 32.2 289 277-606 1-357 (357)
75 KOG0354 DEAD-box like helicase 100.0 3.5E-33 7.5E-38 308.2 28.6 320 270-620 59-528 (746)
76 TIGR00603 rad25 DNA repair hel 100.0 5.9E-33 1.3E-37 312.5 29.0 317 273-636 255-624 (732)
77 KOG0351 ATP-dependent DNA heli 100.0 3.7E-33 7.9E-38 321.4 26.4 332 262-627 252-598 (941)
78 PRK11131 ATP-dependent RNA hel 100.0 1.3E-32 2.9E-37 323.5 29.0 298 279-622 80-412 (1294)
79 COG1205 Distinct helicase fami 100.0 3.8E-32 8.3E-37 315.4 31.9 342 259-621 56-422 (851)
80 PRK13104 secA preprotein trans 100.0 3.3E-31 7.1E-36 300.1 30.0 333 273-624 82-590 (896)
81 KOG0352 ATP-dependent DNA heli 100.0 5.4E-32 1.2E-36 275.2 20.5 335 262-631 7-372 (641)
82 PRK04914 ATP-dependent helicas 100.0 1.2E-30 2.5E-35 303.6 34.3 341 273-642 152-628 (956)
83 PRK05580 primosome assembly pr 100.0 2.4E-30 5.2E-35 297.2 36.3 316 273-626 144-554 (679)
84 PRK12904 preprotein translocas 100.0 1.4E-30 3E-35 295.1 31.5 335 269-623 78-575 (830)
85 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.8E-31 6E-36 313.6 27.0 300 280-622 74-405 (1283)
86 PRK12906 secA preprotein trans 100.0 3.1E-30 6.8E-35 291.0 31.9 335 269-623 77-555 (796)
87 PRK12899 secA preprotein trans 100.0 6E-30 1.3E-34 289.2 31.3 351 255-623 66-683 (970)
88 KOG0353 ATP-dependent DNA heli 100.0 6.2E-30 1.3E-34 256.4 23.4 331 257-624 77-470 (695)
89 TIGR00595 priA primosomal prot 100.0 9.2E-29 2E-33 274.6 31.9 291 292-623 1-383 (505)
90 KOG0951 RNA helicase BRR2, DEA 100.0 9.7E-30 2.1E-34 285.9 24.1 383 257-659 295-739 (1674)
91 cd00268 DEADc DEAD-box helicas 100.0 6.5E-29 1.4E-33 245.8 24.6 202 253-477 1-202 (203)
92 COG1061 SSL2 DNA or RNA helica 100.0 1.6E-28 3.4E-33 269.5 26.6 291 272-607 35-375 (442)
93 PRK09694 helicase Cas3; Provis 100.0 2.1E-27 4.5E-32 274.9 35.4 311 271-610 284-664 (878)
94 PRK13107 preprotein translocas 100.0 3.7E-28 7.9E-33 274.5 25.6 335 269-623 79-593 (908)
95 PRK11448 hsdR type I restricti 100.0 2.8E-26 6.1E-31 272.7 30.7 306 272-609 412-801 (1123)
96 KOG0947 Cytoplasmic exosomal R 99.9 1.1E-25 2.4E-30 248.2 26.6 327 266-636 291-737 (1248)
97 KOG0922 DEAH-box RNA helicase 99.9 7.1E-26 1.5E-30 244.5 20.9 310 279-623 57-392 (674)
98 PLN03142 Probable chromatin-re 99.9 5.8E-25 1.3E-29 256.9 30.0 330 273-618 169-594 (1033)
99 COG1643 HrpA HrpA-like helicas 99.9 1.8E-25 3.8E-30 255.1 22.3 303 280-622 57-388 (845)
100 COG4581 Superfamily II RNA hel 99.9 1E-24 2.2E-29 250.2 27.8 322 264-623 111-539 (1041)
101 KOG0950 DNA polymerase theta/e 99.9 4E-25 8.6E-30 245.9 21.3 344 258-630 207-620 (1008)
102 COG4098 comFA Superfamily II D 99.9 5.2E-23 1.1E-27 205.5 30.9 304 273-624 97-419 (441)
103 PF00270 DEAD: DEAD/DEAH box h 99.9 2E-24 4.3E-29 206.9 19.5 167 275-465 1-168 (169)
104 KOG0948 Nuclear exosomal RNA h 99.9 1.1E-24 2.4E-29 235.1 19.5 305 273-620 129-538 (1041)
105 PRK12900 secA preprotein trans 99.9 3E-24 6.6E-29 243.7 22.8 333 274-623 137-713 (1025)
106 KOG0923 mRNA splicing factor A 99.9 1.3E-24 2.8E-29 232.0 17.0 310 272-619 264-604 (902)
107 KOG0924 mRNA splicing factor A 99.9 3.1E-24 6.8E-29 229.3 16.4 307 275-621 358-697 (1042)
108 PRK12326 preprotein translocas 99.9 5.8E-22 1.3E-26 219.6 32.1 334 269-623 75-549 (764)
109 PRK13103 secA preprotein trans 99.9 5E-22 1.1E-26 225.2 26.4 331 273-623 82-593 (913)
110 KOG0385 Chromatin remodeling c 99.9 6.2E-22 1.3E-26 215.0 25.7 334 273-622 167-598 (971)
111 COG1110 Reverse gyrase [DNA re 99.9 1.5E-21 3.2E-26 218.6 28.1 293 269-592 79-416 (1187)
112 COG1203 CRISPR-associated heli 99.9 3.4E-22 7.5E-27 232.0 23.9 331 273-629 195-558 (733)
113 COG1198 PriA Primosomal protei 99.9 4.5E-21 9.8E-26 216.2 28.6 319 273-629 198-611 (730)
114 TIGR00631 uvrb excinuclease AB 99.9 1.4E-20 3.1E-25 214.1 33.0 133 499-632 425-564 (655)
115 TIGR01407 dinG_rel DnaQ family 99.9 7.1E-21 1.5E-25 225.4 31.3 361 258-633 231-828 (850)
116 PRK12903 secA preprotein trans 99.9 2.8E-20 6.1E-25 208.8 27.9 334 269-623 75-541 (925)
117 KOG0920 ATP-dependent RNA heli 99.9 1.3E-20 2.9E-25 214.4 25.4 314 274-622 174-545 (924)
118 KOG0926 DEAH-box RNA helicase 99.9 8.4E-22 1.8E-26 214.0 14.8 315 279-620 262-703 (1172)
119 KOG0384 Chromodomain-helicase 99.9 1.5E-21 3.3E-26 221.2 16.2 386 216-622 315-812 (1373)
120 PRK05298 excinuclease ABC subu 99.9 1.8E-19 3.9E-24 206.5 31.2 147 500-647 430-592 (652)
121 TIGR00348 hsdR type I site-spe 99.9 1.1E-19 2.4E-24 209.0 28.6 318 273-633 238-658 (667)
122 CHL00122 secA preprotein trans 99.9 2.1E-19 4.7E-24 203.1 28.3 292 269-580 73-490 (870)
123 COG4096 HsdR Type I site-speci 99.8 3.7E-20 8.1E-25 204.8 20.8 296 270-608 162-525 (875)
124 KOG0387 Transcription-coupled 99.8 1.4E-19 3E-24 197.9 21.9 330 273-622 205-659 (923)
125 smart00487 DEXDc DEAD-like hel 99.8 8.8E-19 1.9E-23 170.9 21.5 187 269-481 4-192 (201)
126 KOG0925 mRNA splicing factor A 99.8 3E-19 6.5E-24 185.4 17.5 328 250-621 24-387 (699)
127 COG0556 UvrB Helicase subunit 99.8 1.6E-17 3.5E-22 175.1 30.2 192 448-647 385-592 (663)
128 PRK12902 secA preprotein trans 99.8 5.7E-18 1.2E-22 191.1 28.5 290 273-581 85-506 (939)
129 PRK07246 bifunctional ATP-depe 99.8 1.4E-17 3E-22 195.0 32.7 344 266-633 239-797 (820)
130 KOG0392 SNF2 family DNA-depend 99.8 4.2E-19 9.1E-24 200.8 18.5 340 273-621 975-1454(1549)
131 KOG0949 Predicted helicase, DE 99.8 2.7E-18 5.8E-23 190.6 23.0 160 273-462 511-674 (1330)
132 KOG0389 SNF2 family DNA-depend 99.8 2.8E-18 6.2E-23 187.4 21.2 337 273-622 399-889 (941)
133 KOG1123 RNA polymerase II tran 99.8 1E-18 2.2E-23 181.8 16.7 321 273-631 302-663 (776)
134 KOG0390 DNA repair protein, SN 99.8 1.8E-17 3.8E-22 186.2 27.2 339 273-618 238-702 (776)
135 KOG0953 Mitochondrial RNA heli 99.8 2.6E-18 5.6E-23 181.4 17.1 300 288-656 191-515 (700)
136 cd00079 HELICc Helicase superf 99.7 2.2E-17 4.7E-22 150.7 14.6 119 499-617 11-131 (131)
137 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.8E-15 3.8E-20 170.1 30.5 116 503-621 460-616 (636)
138 PRK08074 bifunctional ATP-depe 99.7 1.3E-15 2.7E-20 181.6 30.8 121 513-633 751-907 (928)
139 PRK12901 secA preprotein trans 99.7 4.2E-16 9.2E-21 177.7 22.8 332 274-623 168-743 (1112)
140 KOG0386 Chromatin remodeling c 99.7 1.4E-16 3.1E-21 178.1 17.4 340 270-627 391-842 (1157)
141 KOG1000 Chromatin remodeling p 99.7 2.3E-15 5E-20 157.1 24.7 311 271-619 196-599 (689)
142 COG4889 Predicted helicase [Ge 99.7 2.8E-17 6.2E-22 180.2 11.0 327 266-618 154-585 (1518)
143 PF00271 Helicase_C: Helicase 99.7 4.3E-17 9.2E-22 135.2 9.1 78 532-609 1-78 (78)
144 KOG4150 Predicted ATP-dependen 99.7 3.7E-16 8E-21 164.8 15.3 340 263-624 276-643 (1034)
145 KOG0951 RNA helicase BRR2, DEA 99.7 3.8E-16 8.2E-21 177.4 15.6 344 271-661 1141-1534(1674)
146 cd00046 DEXDc DEAD-like helica 99.7 3E-15 6.5E-20 137.3 16.7 144 289-459 1-144 (144)
147 PRK11747 dinG ATP-dependent DN 99.6 8.9E-13 1.9E-17 152.7 32.6 104 514-621 534-674 (697)
148 PRK14873 primosome assembly pr 99.6 1.6E-13 3.5E-18 156.3 25.9 98 295-412 167-268 (665)
149 PF06862 DUF1253: Protein of u 99.6 3.2E-13 7E-18 144.8 25.5 253 377-630 131-424 (442)
150 KOG0388 SNF2 family DNA-depend 99.6 7E-14 1.5E-18 151.0 20.2 126 496-621 1024-1154(1185)
151 KOG0391 SNF2 family DNA-depend 99.6 1.8E-13 3.8E-18 154.3 24.1 120 501-620 1261-1386(1958)
152 KOG4439 RNA polymerase II tran 99.6 6.4E-14 1.4E-18 151.8 19.2 119 498-616 727-851 (901)
153 PF04851 ResIII: Type III rest 99.6 2E-14 4.4E-19 139.1 13.3 152 273-460 3-183 (184)
154 TIGR00604 rad3 DNA repair heli 99.6 1.8E-12 4E-17 151.2 31.3 75 269-351 6-84 (705)
155 COG1199 DinG Rad3-related DNA 99.6 8E-13 1.7E-17 153.7 28.1 104 514-620 479-616 (654)
156 KOG1002 Nucleotide excision re 99.6 3.4E-13 7.3E-18 140.8 21.4 122 500-621 620-749 (791)
157 smart00490 HELICc helicase sup 99.6 1.6E-14 3.5E-19 120.2 9.3 81 529-609 2-82 (82)
158 KOG2340 Uncharacterized conser 99.5 4.2E-13 9.2E-18 141.5 14.3 359 271-630 214-677 (698)
159 TIGR02562 cas3_yersinia CRISPR 99.5 2.7E-12 5.7E-17 147.8 20.1 310 272-610 407-881 (1110)
160 COG0653 SecA Preprotein transl 99.5 3.5E-12 7.7E-17 144.4 20.8 331 274-622 79-546 (822)
161 COG0553 HepA Superfamily II DN 99.4 7.8E-12 1.7E-16 150.5 21.8 351 270-629 335-828 (866)
162 KOG1015 Transcription regulato 99.3 1.3E-10 2.8E-15 129.6 19.2 117 501-617 1127-1271(1567)
163 PF00176 SNF2_N: SNF2 family N 99.2 9.1E-11 2E-15 122.9 14.7 158 277-461 1-174 (299)
164 COG0610 Type I site-specific r 99.2 2E-09 4.3E-14 128.3 26.3 295 289-619 274-651 (962)
165 PF02399 Herpes_ori_bp: Origin 99.2 7.8E-10 1.7E-14 124.9 21.4 288 290-621 51-388 (824)
166 smart00488 DEXDc2 DEAD-like he 99.1 5.3E-10 1.2E-14 116.3 13.7 75 270-350 6-84 (289)
167 smart00489 DEXDc3 DEAD-like he 99.1 5.3E-10 1.2E-14 116.3 13.7 75 270-350 6-84 (289)
168 PF07652 Flavi_DEAD: Flaviviru 99.1 3.5E-10 7.5E-15 102.5 8.1 138 288-464 4-141 (148)
169 PF07517 SecA_DEAD: SecA DEAD- 99.0 1.3E-08 2.8E-13 103.4 17.2 130 269-414 74-210 (266)
170 PRK15483 type III restriction- 99.0 3E-07 6.5E-12 107.2 29.1 73 564-636 501-583 (986)
171 KOG0921 Dosage compensation co 98.9 1.7E-08 3.6E-13 112.9 14.0 322 279-619 384-772 (1282)
172 COG3587 Restriction endonuclea 98.7 8.2E-07 1.8E-11 99.8 18.3 74 563-636 482-568 (985)
173 TIGR00596 rad1 DNA repair prot 98.5 2E-06 4.3E-11 100.3 17.4 56 374-429 4-59 (814)
174 KOG1016 Predicted DNA helicase 98.4 3.2E-06 6.9E-11 93.5 14.7 115 514-628 719-854 (1387)
175 PF13086 AAA_11: AAA domain; P 98.4 1.4E-06 3.1E-11 87.4 10.7 73 274-349 2-75 (236)
176 KOG0952 DNA/RNA helicase MER3/ 98.3 3.2E-07 7E-12 104.8 3.7 115 289-415 944-1060(1230)
177 KOG1802 RNA helicase nonsense 98.2 2.4E-05 5.3E-10 85.8 15.1 84 265-362 402-485 (935)
178 KOG1001 Helicase-like transcri 98.2 3.2E-06 7E-11 96.6 8.4 117 500-616 522-643 (674)
179 PF13604 AAA_30: AAA domain; P 98.1 1.6E-05 3.5E-10 78.1 10.6 113 273-431 1-119 (196)
180 PF13307 Helicase_C_2: Helicas 98.1 5.8E-06 1.2E-10 79.0 7.2 111 507-620 3-149 (167)
181 PF02562 PhoH: PhoH-like prote 98.1 2.8E-05 6.1E-10 76.1 10.5 136 272-431 3-145 (205)
182 TIGR00376 DNA helicase, putati 98.0 6.8E-05 1.5E-09 86.4 13.3 67 272-349 156-223 (637)
183 KOG1803 DNA helicase [Replicat 97.9 4.3E-05 9.4E-10 83.6 10.3 63 273-346 185-248 (649)
184 COG3421 Uncharacterized protei 97.9 7.8E-05 1.7E-09 81.2 11.9 112 293-414 2-125 (812)
185 PF13872 AAA_34: P-loop contai 97.8 0.00021 4.5E-09 73.3 11.8 161 273-466 37-227 (303)
186 PF09848 DUF2075: Uncharacteri 97.8 7.6E-05 1.7E-09 80.3 9.2 108 290-428 3-117 (352)
187 PRK10536 hypothetical protein; 97.7 0.00049 1.1E-08 69.4 13.3 62 269-339 55-116 (262)
188 PF12340 DUF3638: Protein of u 97.6 0.00093 2E-08 66.1 13.5 150 252-415 4-186 (229)
189 KOG1132 Helicase of the DEAD s 97.6 0.00022 4.8E-09 81.1 10.3 139 273-414 21-260 (945)
190 PF13245 AAA_19: Part of AAA d 97.6 0.00024 5.1E-09 58.2 7.0 53 288-347 10-62 (76)
191 PRK10875 recD exonuclease V su 97.5 0.001 2.2E-08 76.0 12.9 72 274-352 153-224 (615)
192 TIGR01448 recD_rel helicase, p 97.5 0.0014 2.9E-08 77.0 14.2 65 269-345 320-386 (720)
193 PRK13889 conjugal transfer rel 97.5 0.0014 3E-08 78.4 14.2 60 273-343 346-406 (988)
194 TIGR01447 recD exodeoxyribonuc 97.5 0.0014 3E-08 74.8 13.8 132 276-431 148-285 (586)
195 PRK12723 flagellar biosynthesi 97.3 0.013 2.7E-07 63.5 18.6 171 288-523 174-348 (388)
196 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0018 4E-08 76.1 12.4 60 273-343 352-412 (744)
197 KOG1805 DNA replication helica 97.2 0.0021 4.6E-08 74.1 11.1 136 256-414 656-809 (1100)
198 PRK14722 flhF flagellar biosyn 97.2 0.0039 8.5E-08 66.8 12.5 180 287-523 136-317 (374)
199 PF13401 AAA_22: AAA domain; P 97.2 0.0027 5.8E-08 57.5 9.7 23 288-310 4-26 (131)
200 PRK04296 thymidine kinase; Pro 97.1 0.0015 3.3E-08 63.8 7.8 35 290-335 4-38 (190)
201 smart00492 HELICc3 helicase su 97.1 0.0038 8.3E-08 57.7 9.9 93 527-619 4-136 (141)
202 PF00580 UvrD-helicase: UvrD/R 97.0 0.002 4.3E-08 67.7 8.4 123 274-411 1-125 (315)
203 PRK13826 Dtr system oriT relax 97.0 0.0083 1.8E-07 72.4 14.0 74 258-343 367-441 (1102)
204 smart00491 HELICc2 helicase su 96.9 0.0048 1E-07 57.1 8.9 93 527-619 4-137 (142)
205 PF00448 SRP54: SRP54-type pro 96.9 0.015 3.3E-07 56.9 12.9 172 290-524 3-177 (196)
206 PRK11889 flhF flagellar biosyn 96.9 0.064 1.4E-06 57.6 17.9 168 289-523 242-413 (436)
207 KOG1131 RNA polymerase II tran 96.9 0.012 2.5E-07 63.8 12.2 79 514-593 530-623 (755)
208 PRK14974 cell division protein 96.8 0.023 5E-07 60.3 14.1 132 289-471 141-276 (336)
209 PRK06526 transposase; Provisio 96.8 0.004 8.6E-08 63.6 7.9 29 285-313 95-123 (254)
210 PRK05703 flhF flagellar biosyn 96.8 0.08 1.7E-06 58.3 18.5 169 288-524 221-394 (424)
211 PRK08181 transposase; Validate 96.7 0.0076 1.7E-07 62.0 9.3 47 285-343 103-149 (269)
212 KOG0383 Predicted helicase [Ge 96.7 0.00014 3E-09 82.5 -3.9 78 499-577 614-696 (696)
213 TIGR02760 TraI_TIGR conjugativ 96.7 0.2 4.3E-06 65.2 23.4 237 273-564 429-686 (1960)
214 PF14617 CMS1: U3-containing 9 96.6 0.0033 7.1E-08 63.5 6.0 87 325-412 124-212 (252)
215 cd00009 AAA The AAA+ (ATPases 96.6 0.017 3.7E-07 52.5 10.4 20 288-307 19-38 (151)
216 COG1875 NYN ribonuclease and A 96.6 0.02 4.4E-07 59.8 11.6 66 269-342 224-291 (436)
217 PRK06921 hypothetical protein; 96.6 0.032 7E-07 57.4 12.9 21 287-307 116-136 (266)
218 PF05970 PIF1: PIF1-like helic 96.5 0.0069 1.5E-07 65.4 8.2 59 274-343 2-66 (364)
219 COG2805 PilT Tfp pilus assembl 96.5 0.0047 1E-07 62.9 6.2 52 244-315 99-151 (353)
220 PF13871 Helicase_C_4: Helicas 96.5 0.0091 2E-07 61.1 7.9 65 555-619 52-125 (278)
221 PRK12377 putative replication 96.4 0.033 7.1E-07 56.6 11.4 45 288-344 101-145 (248)
222 PRK07952 DNA replication prote 96.4 0.041 9E-07 55.7 12.1 41 289-341 100-140 (244)
223 PRK06835 DNA replication prote 96.4 0.063 1.4E-06 57.0 13.9 45 287-343 182-226 (329)
224 PRK06893 DNA replication initi 96.4 0.011 2.4E-07 59.5 7.9 48 399-462 89-137 (229)
225 cd01120 RecA-like_NTPases RecA 96.3 0.045 9.7E-07 51.1 11.5 40 291-341 2-41 (165)
226 PRK05642 DNA replication initi 96.3 0.012 2.7E-07 59.4 8.0 32 399-430 95-127 (234)
227 smart00382 AAA ATPases associa 96.3 0.0044 9.4E-08 55.9 4.3 42 288-340 2-43 (148)
228 PRK08727 hypothetical protein; 96.3 0.017 3.7E-07 58.3 8.9 19 289-307 42-60 (233)
229 PRK14723 flhF flagellar biosyn 96.3 0.054 1.2E-06 63.1 13.8 25 288-312 185-209 (767)
230 KOG0298 DEAD box-containing he 96.3 0.0097 2.1E-07 70.6 7.7 156 287-464 373-555 (1394)
231 KOG1133 Helicase of the DEAD s 96.2 0.28 6.1E-06 55.3 18.1 144 499-655 611-804 (821)
232 PHA02533 17 large terminase pr 96.2 0.042 9.1E-07 62.1 11.9 122 273-414 59-182 (534)
233 COG1419 FlhF Flagellar GTP-bin 96.1 0.028 6E-07 60.1 9.3 91 287-412 202-292 (407)
234 PRK14721 flhF flagellar biosyn 96.1 0.25 5.4E-06 54.0 16.9 174 287-525 190-364 (420)
235 PRK08084 DNA replication initi 96.0 0.031 6.6E-07 56.5 9.1 19 288-306 45-63 (235)
236 TIGR01547 phage_term_2 phage t 95.9 0.037 8E-07 60.6 10.0 147 290-471 3-152 (396)
237 COG1484 DnaC DNA replication p 95.9 0.015 3.4E-07 59.3 6.5 49 287-347 104-152 (254)
238 PRK06995 flhF flagellar biosyn 95.9 0.051 1.1E-06 60.3 10.9 90 288-389 256-347 (484)
239 PF05621 TniB: Bacterial TniB 95.9 0.027 5.8E-07 58.2 8.1 112 289-429 62-175 (302)
240 TIGR00064 ftsY signal recognit 95.8 0.1 2.2E-06 54.0 12.0 87 289-389 73-167 (272)
241 TIGR01075 uvrD DNA helicase II 95.8 0.03 6.5E-07 66.2 9.1 70 272-350 3-72 (715)
242 cd01124 KaiC KaiC is a circadi 95.8 0.067 1.5E-06 51.6 10.1 48 291-350 2-49 (187)
243 PRK12726 flagellar biosynthesi 95.7 0.34 7.3E-06 52.0 15.3 25 288-312 206-230 (407)
244 PF02456 Adeno_IVa2: Adenoviru 95.7 0.011 2.4E-07 60.2 4.1 120 291-432 90-225 (369)
245 PRK11773 uvrD DNA-dependent he 95.6 0.034 7.3E-07 65.7 8.8 71 272-351 8-78 (721)
246 PRK06731 flhF flagellar biosyn 95.6 0.82 1.8E-05 47.1 17.7 169 287-523 74-247 (270)
247 PRK12422 chromosomal replicati 95.6 0.069 1.5E-06 59.1 10.6 36 289-335 142-177 (445)
248 TIGR03420 DnaA_homol_Hda DnaA 95.6 0.065 1.4E-06 53.5 9.6 21 287-307 37-57 (226)
249 PRK00149 dnaA chromosomal repl 95.6 0.075 1.6E-06 59.2 10.8 19 289-307 149-167 (450)
250 PF10593 Z1: Z1 domain; Inter 95.5 0.03 6.5E-07 56.6 6.5 107 538-654 110-222 (239)
251 TIGR01074 rep ATP-dependent DN 95.5 0.063 1.4E-06 63.0 10.1 69 274-351 2-70 (664)
252 PF03354 Terminase_1: Phage Te 95.4 0.053 1.1E-06 60.9 9.0 127 276-416 1-138 (477)
253 PF05127 Helicase_RecD: Helica 95.4 0.0066 1.4E-07 58.1 1.5 102 292-413 1-102 (177)
254 PRK11054 helD DNA helicase IV; 95.4 0.054 1.2E-06 63.2 9.2 78 265-351 188-265 (684)
255 TIGR03499 FlhF flagellar biosy 95.4 0.051 1.1E-06 56.5 8.2 25 288-312 194-218 (282)
256 PRK12724 flagellar biosynthesi 95.4 0.76 1.6E-05 50.1 17.2 168 289-523 224-395 (432)
257 PRK14712 conjugal transfer nic 95.3 0.097 2.1E-06 65.5 11.4 62 273-343 835-900 (1623)
258 COG2256 MGS1 ATPase related to 95.3 0.083 1.8E-06 56.1 9.3 20 290-309 50-69 (436)
259 PRK08116 hypothetical protein; 95.3 0.16 3.5E-06 52.4 11.5 43 289-343 115-157 (268)
260 PRK11331 5-methylcytosine-spec 95.3 0.058 1.2E-06 59.0 8.4 35 273-307 179-213 (459)
261 PRK08903 DnaA regulatory inact 95.2 0.09 2E-06 52.7 9.0 20 288-307 42-61 (227)
262 PHA03333 putative ATPase subun 95.2 0.3 6.5E-06 55.7 13.6 59 287-355 186-244 (752)
263 PRK14087 dnaA chromosomal repl 95.2 0.086 1.9E-06 58.6 9.5 47 289-345 142-188 (450)
264 PHA03368 DNA packaging termina 95.2 0.28 6E-06 55.8 13.2 109 288-415 254-366 (738)
265 COG1444 Predicted P-loop ATPas 95.1 0.49 1.1E-05 54.8 15.4 178 213-413 139-335 (758)
266 PRK00771 signal recognition pa 95.1 0.22 4.8E-06 54.8 12.3 22 289-310 96-117 (437)
267 TIGR00362 DnaA chromosomal rep 95.1 0.098 2.1E-06 57.5 9.6 24 290-314 138-161 (405)
268 cd00561 CobA_CobO_BtuR ATP:cor 95.1 0.49 1.1E-05 44.6 12.8 136 291-468 5-147 (159)
269 PRK05986 cob(I)alamin adenolsy 95.1 0.14 3.1E-06 49.5 9.4 145 287-468 21-167 (191)
270 PRK13342 recombination factor 95.1 0.22 4.9E-06 54.8 12.3 18 290-307 38-55 (413)
271 PRK13833 conjugal transfer pro 95.0 0.089 1.9E-06 55.5 8.6 58 274-340 129-187 (323)
272 PRK10917 ATP-dependent DNA hel 95.0 0.13 2.8E-06 60.4 10.7 76 513-588 309-389 (681)
273 PRK13709 conjugal transfer nic 95.0 0.18 3.9E-06 64.0 12.4 64 273-343 967-1032(1747)
274 TIGR02525 plasmid_TraJ plasmid 95.0 0.066 1.4E-06 57.7 7.5 26 288-314 149-174 (372)
275 PF05496 RuvB_N: Holliday junc 94.9 0.046 9.9E-07 54.1 5.7 18 290-307 52-69 (233)
276 PRK14088 dnaA chromosomal repl 94.9 0.2 4.4E-06 55.5 11.5 17 290-306 132-148 (440)
277 TIGR03015 pepcterm_ATPase puta 94.8 0.3 6.5E-06 50.1 11.9 34 273-306 23-61 (269)
278 PRK14086 dnaA chromosomal repl 94.8 0.1 2.2E-06 59.3 8.9 32 399-430 375-407 (617)
279 PRK13894 conjugal transfer ATP 94.8 0.1 2.3E-06 55.1 8.5 66 264-340 125-191 (319)
280 PF00004 AAA: ATPase family as 94.8 0.12 2.6E-06 46.4 7.9 17 401-417 58-74 (132)
281 COG1435 Tdk Thymidine kinase [ 94.8 0.17 3.7E-06 48.7 8.9 102 291-428 7-108 (201)
282 PF01695 IstB_IS21: IstB-like 94.7 0.058 1.3E-06 52.0 5.9 44 287-342 46-89 (178)
283 PHA02544 44 clamp loader, smal 94.7 0.21 4.5E-06 52.8 10.7 30 400-429 99-128 (316)
284 PRK05707 DNA polymerase III su 94.7 0.29 6.3E-06 52.0 11.6 41 273-313 3-47 (328)
285 PRK07764 DNA polymerase III su 94.7 0.16 3.4E-06 60.4 10.5 23 290-312 39-61 (824)
286 TIGR02524 dot_icm_DotB Dot/Icm 94.7 0.078 1.7E-06 57.0 7.1 27 287-314 133-159 (358)
287 PRK14956 DNA polymerase III su 94.7 0.11 2.4E-06 57.5 8.4 20 290-309 42-61 (484)
288 COG4962 CpaF Flp pilus assembl 94.6 0.054 1.2E-06 56.6 5.6 66 264-341 148-214 (355)
289 PRK10919 ATP-dependent DNA hel 94.6 0.079 1.7E-06 62.0 7.7 70 273-351 2-71 (672)
290 PRK12727 flagellar biosynthesi 94.6 0.15 3.3E-06 56.8 9.4 26 287-312 349-374 (559)
291 TIGR02760 TraI_TIGR conjugativ 94.6 0.19 4.1E-06 65.3 11.6 62 272-343 1018-1084(1960)
292 PRK10867 signal recognition pa 94.6 0.75 1.6E-05 50.6 14.6 59 290-361 102-162 (433)
293 TIGR00708 cobA cob(I)alamin ad 94.6 0.22 4.7E-06 47.5 9.1 140 291-468 8-149 (173)
294 cd01122 GP4d_helicase GP4d_hel 94.6 0.1 2.2E-06 53.8 7.6 52 287-349 29-80 (271)
295 COG1110 Reverse gyrase [DNA re 94.5 0.29 6.4E-06 57.6 11.6 116 462-590 86-211 (1187)
296 TIGR01073 pcrA ATP-dependent D 94.5 0.1 2.2E-06 61.8 8.3 70 272-350 3-72 (726)
297 PRK05580 primosome assembly pr 94.4 0.29 6.3E-06 57.4 11.7 91 499-590 173-266 (679)
298 PRK14964 DNA polymerase III su 94.4 0.33 7.2E-06 54.2 11.5 22 289-310 36-57 (491)
299 TIGR00595 priA primosomal prot 94.4 0.26 5.6E-06 55.7 10.8 91 499-590 8-101 (505)
300 TIGR02881 spore_V_K stage V sp 94.3 0.33 7.2E-06 49.8 10.7 19 290-308 44-62 (261)
301 TIGR02785 addA_Gpos recombinat 94.3 0.23 4.9E-06 62.2 11.2 123 274-412 2-126 (1232)
302 TIGR02782 TrbB_P P-type conjug 94.3 0.18 3.8E-06 52.9 8.7 66 264-340 109-175 (299)
303 COG1200 RecG RecG-like helicas 94.3 0.21 4.7E-06 56.6 9.6 92 499-590 295-392 (677)
304 COG3973 Superfamily I DNA and 94.2 0.15 3.2E-06 56.8 8.1 71 278-357 214-286 (747)
305 COG5008 PilU Tfp pilus assembl 94.2 0.26 5.7E-06 49.5 9.1 46 248-313 105-151 (375)
306 TIGR01425 SRP54_euk signal rec 94.2 0.95 2.1E-05 49.6 14.3 61 290-364 102-164 (429)
307 TIGR00643 recG ATP-dependent D 94.2 0.22 4.8E-06 57.9 10.2 76 513-588 283-363 (630)
308 TIGR02688 conserved hypothetic 94.2 0.4 8.6E-06 52.1 11.1 26 282-307 203-228 (449)
309 PRK00411 cdc6 cell division co 94.2 0.48 1E-05 51.7 12.3 24 289-313 56-79 (394)
310 COG0593 DnaA ATPase involved i 94.0 0.42 9E-06 51.8 11.0 48 401-464 175-223 (408)
311 PRK13341 recombination factor 94.0 0.41 9E-06 56.2 11.7 18 290-307 54-71 (725)
312 PF00308 Bac_DnaA: Bacterial d 93.9 0.12 2.7E-06 51.5 6.5 49 399-463 95-144 (219)
313 PRK10416 signal recognition pa 93.9 0.63 1.4E-05 49.2 12.0 87 288-388 114-208 (318)
314 CHL00181 cbbX CbbX; Provisiona 93.8 0.56 1.2E-05 48.9 11.2 21 289-309 60-80 (287)
315 TIGR01420 pilT_fam pilus retra 93.8 0.17 3.6E-06 54.3 7.4 42 288-339 122-163 (343)
316 PRK14873 primosome assembly pr 93.7 0.47 1E-05 55.2 11.4 91 499-590 171-265 (665)
317 KOG0733 Nuclear AAA ATPase (VC 93.7 0.48 1E-05 53.0 10.6 57 246-305 503-562 (802)
318 cd03115 SRP The signal recogni 93.6 1.6 3.5E-05 41.5 13.3 21 291-311 3-23 (173)
319 PRK04195 replication factor C 93.5 0.47 1E-05 53.4 10.9 20 288-307 39-58 (482)
320 PF05876 Terminase_GpA: Phage 93.5 0.063 1.4E-06 61.2 3.8 126 273-414 16-147 (557)
321 PRK14962 DNA polymerase III su 93.5 0.8 1.7E-05 51.2 12.3 20 290-309 38-57 (472)
322 PRK07003 DNA polymerase III su 93.4 0.46 1E-05 55.2 10.5 35 546-580 242-278 (830)
323 PRK05563 DNA polymerase III su 93.4 0.21 4.6E-06 57.0 7.8 22 290-311 40-61 (559)
324 PRK08769 DNA polymerase III su 93.4 0.89 1.9E-05 48.0 11.9 42 271-312 2-50 (319)
325 PF03237 Terminase_6: Terminas 93.4 0.65 1.4E-05 49.7 11.4 111 292-422 1-118 (384)
326 PRK06645 DNA polymerase III su 93.3 0.58 1.3E-05 52.6 10.9 21 290-310 45-65 (507)
327 COG4626 Phage terminase-like p 93.3 0.65 1.4E-05 51.7 11.0 134 273-429 61-210 (546)
328 TIGR00959 ffh signal recogniti 93.3 1.8 3.9E-05 47.7 14.5 60 290-362 101-162 (428)
329 PRK12323 DNA polymerase III su 93.2 0.38 8.2E-06 55.0 9.3 22 290-311 40-61 (700)
330 PRK13851 type IV secretion sys 93.2 0.15 3.2E-06 54.5 5.8 45 284-340 158-202 (344)
331 PRK13764 ATPase; Provisional 93.2 0.2 4.4E-06 57.1 7.1 27 287-314 256-282 (602)
332 TIGR03878 thermo_KaiC_2 KaiC d 93.2 0.53 1.2E-05 48.3 9.7 56 288-355 36-91 (259)
333 PRK08533 flagellar accessory p 93.1 1.1 2.4E-05 45.0 11.7 51 287-349 23-73 (230)
334 PRK12402 replication factor C 93.1 0.6 1.3E-05 49.6 10.4 19 290-308 38-56 (337)
335 PTZ00293 thymidine kinase; Pro 93.0 0.34 7.3E-06 47.8 7.6 39 288-337 4-42 (211)
336 PF02572 CobA_CobO_BtuR: ATP:c 93.0 1.7 3.8E-05 41.4 12.2 141 291-468 6-148 (172)
337 KOG0991 Replication factor C, 93.0 0.2 4.2E-06 49.4 5.8 23 290-312 50-72 (333)
338 PRK06620 hypothetical protein; 92.9 0.23 4.9E-06 49.4 6.3 17 289-305 45-61 (214)
339 PRK03992 proteasome-activating 92.9 0.53 1.2E-05 51.4 9.7 17 289-305 166-182 (389)
340 PRK08939 primosomal protein Dn 92.9 0.38 8.2E-06 50.6 8.2 25 288-312 156-180 (306)
341 KOG1133 Helicase of the DEAD s 92.8 0.14 3E-06 57.6 5.1 43 273-315 15-61 (821)
342 PLN03025 replication factor C 92.8 0.67 1.5E-05 49.1 10.2 20 290-309 36-55 (319)
343 PRK14949 DNA polymerase III su 92.8 0.62 1.4E-05 55.1 10.5 19 291-309 41-59 (944)
344 PRK14955 DNA polymerase III su 92.8 1.3 2.8E-05 48.5 12.6 20 290-309 40-59 (397)
345 PRK13900 type IV secretion sys 92.7 0.18 4E-06 53.6 5.7 44 285-340 157-200 (332)
346 KOG0701 dsRNA-specific nucleas 92.7 0.084 1.8E-06 65.5 3.4 94 516-609 294-399 (1606)
347 PF06745 KaiC: KaiC; InterPro 92.7 0.36 7.8E-06 48.3 7.5 51 288-350 19-70 (226)
348 cd01129 PulE-GspE PulE/GspE Th 92.6 0.27 5.9E-06 50.6 6.6 38 275-313 65-104 (264)
349 TIGR00580 mfd transcription-re 92.6 0.58 1.3E-05 56.5 10.3 76 513-588 499-579 (926)
350 TIGR02880 cbbX_cfxQ probable R 92.6 1 2.2E-05 46.9 10.9 21 288-308 58-78 (284)
351 PRK07994 DNA polymerase III su 92.6 1.2 2.5E-05 51.5 12.2 20 291-310 41-60 (647)
352 COG1474 CDC6 Cdc6-related prot 92.5 0.94 2E-05 48.8 10.9 24 289-313 43-66 (366)
353 PRK14959 DNA polymerase III su 92.5 0.44 9.5E-06 54.5 8.7 21 290-310 40-60 (624)
354 PRK14958 DNA polymerase III su 92.5 0.35 7.6E-06 54.6 7.9 20 290-309 40-59 (509)
355 PRK05896 DNA polymerase III su 92.5 0.47 1E-05 54.1 8.8 21 289-309 39-59 (605)
356 PRK08691 DNA polymerase III su 92.4 0.36 7.8E-06 55.7 7.9 20 290-309 40-59 (709)
357 PF11661 DUF2986: Protein of u 92.4 0.089 1.9E-06 37.2 1.8 17 13-29 26-42 (44)
358 PF13173 AAA_14: AAA domain 92.4 1.6 3.5E-05 39.3 10.7 27 401-429 61-87 (128)
359 PRK08699 DNA polymerase III su 92.4 1.2 2.7E-05 47.2 11.4 40 274-313 2-46 (325)
360 PRK14951 DNA polymerase III su 92.3 0.66 1.4E-05 53.3 9.8 20 290-309 40-59 (618)
361 PRK14965 DNA polymerase III su 92.2 0.9 1.9E-05 52.2 10.9 20 290-309 40-59 (576)
362 PF12846 AAA_10: AAA-like doma 92.2 0.44 9.5E-06 49.5 7.8 58 288-364 1-58 (304)
363 PRK06964 DNA polymerase III su 92.2 1.9 4.2E-05 45.9 12.6 40 274-313 2-46 (342)
364 TIGR02928 orc1/cdc6 family rep 92.2 1.1 2.3E-05 48.3 11.1 24 289-313 41-64 (365)
365 PRK11823 DNA repair protein Ra 92.2 0.79 1.7E-05 50.9 10.1 50 288-349 80-129 (446)
366 PTZ00112 origin recognition co 92.2 1.5 3.1E-05 51.8 12.2 18 291-308 784-801 (1164)
367 PRK11034 clpA ATP-dependent Cl 92.2 1.4 3E-05 52.1 12.5 22 288-309 207-228 (758)
368 PRK14960 DNA polymerase III su 92.2 0.3 6.6E-06 55.9 6.8 20 290-309 39-58 (702)
369 PRK10436 hypothetical protein; 92.2 0.32 7E-06 54.0 7.0 25 289-314 219-243 (462)
370 PRK14961 DNA polymerase III su 91.9 0.39 8.5E-06 51.9 7.1 20 290-309 40-59 (363)
371 cd01130 VirB11-like_ATPase Typ 91.8 0.48 1E-05 45.9 7.0 32 273-304 9-41 (186)
372 cd00984 DnaB_C DnaB helicase C 91.8 0.87 1.9E-05 45.9 9.2 39 287-335 12-50 (242)
373 COG1198 PriA Primosomal protei 91.8 0.5 1.1E-05 55.0 8.1 93 494-587 223-318 (730)
374 TIGR02012 tigrfam_recA protein 91.8 0.52 1.1E-05 49.7 7.6 43 288-341 55-97 (321)
375 PRK07940 DNA polymerase III su 91.8 1.8 3.8E-05 47.3 11.9 23 289-311 37-59 (394)
376 PF13481 AAA_25: AAA domain; P 91.7 1.3 2.8E-05 42.8 10.0 64 287-352 31-94 (193)
377 KOG0738 AAA+-type ATPase [Post 91.7 1.4 3E-05 46.9 10.4 17 289-305 246-262 (491)
378 COG2255 RuvB Holliday junction 91.6 0.35 7.5E-06 49.3 5.8 25 385-413 91-115 (332)
379 PRK14950 DNA polymerase III su 91.5 2.7 5.8E-05 48.5 13.8 20 290-309 40-59 (585)
380 cd01121 Sms Sms (bacterial rad 91.5 1.2 2.6E-05 48.2 10.3 48 288-347 82-129 (372)
381 PF06733 DEAD_2: DEAD_2; Inte 91.5 0.16 3.5E-06 48.6 3.3 43 373-415 115-159 (174)
382 PTZ00454 26S protease regulato 91.5 0.99 2.1E-05 49.3 9.7 54 249-305 140-196 (398)
383 COG1618 Predicted nucleotide k 91.5 0.21 4.6E-06 46.5 3.8 115 290-428 7-129 (179)
384 PRK07471 DNA polymerase III su 91.5 0.97 2.1E-05 48.8 9.5 24 290-313 43-66 (365)
385 PRK14963 DNA polymerase III su 91.4 0.48 1E-05 53.4 7.3 19 291-309 39-57 (504)
386 PHA00729 NTP-binding motif con 91.3 0.52 1.1E-05 47.0 6.6 19 290-308 19-37 (226)
387 KOG0742 AAA+-type ATPase [Post 91.2 1 2.2E-05 48.0 8.9 48 251-305 352-401 (630)
388 COG2109 BtuR ATP:corrinoid ade 91.2 2.7 5.9E-05 40.3 11.0 139 291-468 31-174 (198)
389 PF05707 Zot: Zonular occluden 91.2 0.81 1.8E-05 44.6 7.9 23 291-313 3-26 (193)
390 TIGR02538 type_IV_pilB type IV 91.1 0.46 1E-05 54.4 7.0 44 266-313 295-340 (564)
391 PF00437 T2SE: Type II/IV secr 91.1 0.28 6E-06 50.6 4.8 43 287-340 126-168 (270)
392 PRK09111 DNA polymerase III su 91.1 1.1 2.3E-05 51.7 9.8 22 290-311 48-69 (598)
393 PRK09354 recA recombinase A; P 91.1 0.85 1.8E-05 48.6 8.4 43 288-341 60-102 (349)
394 PRK14952 DNA polymerase III su 91.0 1.7 3.7E-05 49.8 11.3 19 291-309 38-56 (584)
395 TIGR02237 recomb_radB DNA repa 90.9 1.4 3.1E-05 43.2 9.6 38 288-336 12-49 (209)
396 PRK10689 transcription-repair 90.9 0.73 1.6E-05 57.0 8.8 76 513-588 648-728 (1147)
397 PRK07414 cob(I)yrinic acid a,c 90.9 1.5 3.3E-05 41.9 9.1 141 291-467 24-166 (178)
398 PHA02535 P terminase ATPase su 90.8 1.3 2.9E-05 50.0 10.0 87 257-353 122-208 (581)
399 PRK14969 DNA polymerase III su 90.8 0.99 2.1E-05 51.3 9.2 20 290-309 40-59 (527)
400 KOG0989 Replication factor C, 90.7 0.39 8.5E-06 49.4 5.2 22 290-311 59-80 (346)
401 cd00983 recA RecA is a bacter 90.7 0.83 1.8E-05 48.2 7.8 43 288-341 55-97 (325)
402 COG3972 Superfamily I DNA and 90.6 0.74 1.6E-05 50.2 7.4 129 276-414 165-308 (660)
403 PRK00080 ruvB Holliday junctio 90.6 0.68 1.5E-05 49.2 7.4 19 289-307 52-70 (328)
404 PF02534 T4SS-DNA_transf: Type 90.6 0.32 7E-06 54.5 5.1 56 289-361 45-100 (469)
405 PF03796 DnaB_C: DnaB-like hel 90.5 1.6 3.4E-05 44.7 9.7 113 290-415 21-144 (259)
406 COG1219 ClpX ATP-dependent pro 90.5 0.19 4.2E-06 51.8 2.8 21 286-306 95-115 (408)
407 PRK06067 flagellar accessory p 90.5 3.6 7.8E-05 41.3 12.2 50 288-349 25-74 (234)
408 COG2909 MalT ATP-dependent tra 90.5 1.3 2.9E-05 51.6 9.7 44 401-461 129-172 (894)
409 cd01128 rho_factor Transcripti 90.5 1.3 2.8E-05 45.1 8.9 18 287-304 15-32 (249)
410 TIGR03877 thermo_KaiC_1 KaiC d 90.5 0.61 1.3E-05 47.1 6.5 51 288-350 21-71 (237)
411 TIGR00635 ruvB Holliday juncti 90.4 0.36 7.9E-06 50.6 5.0 18 289-306 31-48 (305)
412 TIGR03881 KaiC_arch_4 KaiC dom 90.4 1.7 3.6E-05 43.5 9.6 49 288-348 20-68 (229)
413 PRK06871 DNA polymerase III su 90.4 4.7 0.0001 42.7 13.2 40 274-313 3-49 (325)
414 TIGR03819 heli_sec_ATPase heli 90.3 0.76 1.7E-05 49.1 7.3 64 263-340 154-218 (340)
415 KOG0739 AAA+-type ATPase [Post 90.2 7.2 0.00016 40.2 13.5 47 290-351 168-214 (439)
416 TIGR02533 type_II_gspE general 90.2 0.57 1.2E-05 52.6 6.5 38 275-313 227-266 (486)
417 COG0470 HolB ATPase involved i 90.2 0.75 1.6E-05 48.5 7.2 23 291-313 27-49 (325)
418 PRK04841 transcriptional regul 90.2 1.7 3.7E-05 52.9 11.3 45 400-461 120-164 (903)
419 PRK05973 replicative DNA helic 90.2 0.96 2.1E-05 45.6 7.5 53 286-350 62-114 (237)
420 PRK09112 DNA polymerase III su 90.2 0.79 1.7E-05 49.2 7.3 25 290-315 47-71 (351)
421 COG0630 VirB11 Type IV secreto 90.1 0.58 1.3E-05 49.3 6.2 58 271-340 125-183 (312)
422 TIGR01243 CDC48 AAA family ATP 90.1 0.91 2E-05 53.9 8.5 56 248-306 447-505 (733)
423 PRK14957 DNA polymerase III su 90.1 0.82 1.8E-05 51.8 7.7 20 290-309 40-59 (546)
424 PF01637 Arch_ATPase: Archaeal 90.1 0.073 1.6E-06 52.9 -0.6 17 288-304 20-36 (234)
425 PRK14954 DNA polymerase III su 90.0 2.4 5.1E-05 49.0 11.3 20 290-309 40-59 (620)
426 COG2804 PulE Type II secretory 89.9 0.65 1.4E-05 51.2 6.4 39 275-314 243-283 (500)
427 PRK14948 DNA polymerase III su 89.9 1.1 2.3E-05 51.9 8.5 22 289-310 39-60 (620)
428 KOG0741 AAA+-type ATPase [Post 89.8 4.5 9.7E-05 44.8 12.4 69 256-337 494-574 (744)
429 PRK08451 DNA polymerase III su 89.7 1.7 3.6E-05 49.2 9.7 20 290-309 38-57 (535)
430 PF13177 DNA_pol3_delta2: DNA 89.7 3.3 7.2E-05 39.1 10.4 23 290-312 21-43 (162)
431 cd01126 TraG_VirD4 The TraG/Tr 89.6 0.25 5.5E-06 53.8 3.1 57 290-363 1-57 (384)
432 TIGR02639 ClpA ATP-dependent C 89.5 3.5 7.6E-05 49.0 12.7 24 288-311 203-226 (731)
433 KOG0344 ATP-dependent RNA heli 89.4 3.9 8.4E-05 45.7 11.8 99 296-412 365-467 (593)
434 TIGR00763 lon ATP-dependent pr 89.4 1.6 3.4E-05 52.2 9.8 19 288-306 347-365 (775)
435 cd01131 PilT Pilus retraction 89.4 0.55 1.2E-05 46.0 5.0 22 291-313 4-25 (198)
436 TIGR00767 rho transcription te 89.2 2.3 4.9E-05 46.1 9.8 19 287-305 167-185 (415)
437 TIGR03600 phage_DnaB phage rep 89.1 2 4.3E-05 47.4 9.7 114 288-414 194-318 (421)
438 COG0513 SrmB Superfamily II DN 89.1 1.3 2.9E-05 50.1 8.5 67 517-587 102-179 (513)
439 PRK09183 transposase/IS protei 89.0 0.85 1.8E-05 46.8 6.3 45 285-341 99-143 (259)
440 TIGR03346 chaperone_ClpB ATP-d 88.9 4.2 9.2E-05 49.1 13.0 20 289-308 195-214 (852)
441 COG0552 FtsY Signal recognitio 88.9 14 0.00031 38.8 15.0 58 290-361 141-200 (340)
442 KOG0745 Putative ATP-dependent 88.8 0.61 1.3E-05 50.1 5.0 21 286-306 224-244 (564)
443 PLN00020 ribulose bisphosphate 88.7 0.5 1.1E-05 50.3 4.3 19 289-307 149-167 (413)
444 cd01393 recA_like RecA is a b 88.7 3.1 6.8E-05 41.3 10.0 45 288-337 19-63 (226)
445 PF03266 NTPase_1: NTPase; In 88.5 0.086 1.9E-06 50.3 -1.4 28 400-427 94-123 (168)
446 PRK14701 reverse gyrase; Provi 88.4 1.8 3.9E-05 55.4 9.6 61 513-573 121-187 (1638)
447 KOG0060 Long-chain acyl-CoA tr 88.4 0.71 1.5E-05 51.4 5.3 47 383-430 571-617 (659)
448 PF02606 LpxK: Tetraacyldisacc 88.2 14 0.0003 39.3 14.9 237 291-572 37-287 (326)
449 CHL00095 clpC Clp protease ATP 88.0 2.9 6.3E-05 50.3 10.8 24 288-311 200-223 (821)
450 KOG2028 ATPase related to the 88.0 2.4 5.1E-05 44.8 8.5 18 290-307 164-181 (554)
451 TIGR00678 holB DNA polymerase 88.0 5.6 0.00012 38.3 11.1 20 290-309 16-35 (188)
452 PF03969 AFG1_ATPase: AFG1-lik 88.0 5.9 0.00013 42.7 12.1 17 288-304 62-78 (362)
453 PF10412 TrwB_AAD_bind: Type I 88.0 0.62 1.3E-05 50.8 4.7 46 286-342 13-58 (386)
454 PRK13897 type IV secretion sys 88.0 0.54 1.2E-05 54.0 4.3 57 289-362 159-215 (606)
455 PF05729 NACHT: NACHT domain 87.9 8.3 0.00018 35.7 11.9 20 290-309 2-21 (166)
456 PRK10865 protein disaggregatio 87.9 4.1 8.9E-05 49.2 11.9 21 289-309 200-220 (857)
457 PRK14953 DNA polymerase III su 87.8 2.4 5.3E-05 47.6 9.4 19 291-309 41-59 (486)
458 PRK14971 DNA polymerase III su 87.7 2.2 4.9E-05 49.3 9.2 20 290-309 41-60 (614)
459 COG1197 Mfd Transcription-repa 87.7 1.7 3.7E-05 52.5 8.3 76 513-588 642-722 (1139)
460 PF04665 Pox_A32: Poxvirus A32 87.7 0.78 1.7E-05 46.2 4.8 35 290-335 15-49 (241)
461 PF01443 Viral_helicase1: Vira 87.7 0.34 7.3E-06 48.5 2.3 14 291-304 1-14 (234)
462 cd01127 TrwB Bacterial conjuga 87.6 0.58 1.3E-05 51.4 4.3 44 287-341 41-84 (410)
463 PRK09087 hypothetical protein; 87.5 2.3 4.9E-05 42.7 8.1 17 289-305 45-61 (226)
464 PRK06647 DNA polymerase III su 87.4 4.7 0.0001 46.1 11.5 20 290-309 40-59 (563)
465 COG1221 PspF Transcriptional r 87.3 2.9 6.3E-05 45.3 9.1 145 287-481 100-248 (403)
466 PRK06305 DNA polymerase III su 87.3 9 0.00019 42.7 13.4 22 290-311 41-62 (451)
467 CHL00176 ftsH cell division pr 87.3 3.8 8.3E-05 47.5 10.8 18 288-305 216-233 (638)
468 TIGR02788 VirB11 P-type DNA tr 87.1 0.7 1.5E-05 48.7 4.3 19 286-304 142-160 (308)
469 KOG0736 Peroxisome assembly fa 87.0 3.6 7.8E-05 47.6 9.9 70 233-307 653-724 (953)
470 PF08423 Rad51: Rad51; InterP 86.8 2.6 5.6E-05 43.2 8.1 104 290-414 40-146 (256)
471 TIGR02397 dnaX_nterm DNA polym 86.6 4.5 9.8E-05 43.2 10.5 18 290-307 38-55 (355)
472 KOG0730 AAA+-type ATPase [Post 86.6 4.2 9.2E-05 46.2 10.1 60 242-305 422-485 (693)
473 PRK00440 rfc replication facto 86.6 4.8 0.0001 42.3 10.4 18 290-307 40-57 (319)
474 TIGR01241 FtsH_fam ATP-depende 86.6 4.4 9.5E-05 45.8 10.6 17 289-305 89-105 (495)
475 PRK07133 DNA polymerase III su 86.5 1.6 3.4E-05 51.0 7.1 20 290-309 42-61 (725)
476 PRK04328 hypothetical protein; 86.4 1.7 3.7E-05 44.3 6.6 51 288-350 23-73 (249)
477 PRK11634 ATP-dependent RNA hel 86.3 3.1 6.8E-05 48.3 9.5 71 514-588 74-155 (629)
478 PRK07993 DNA polymerase III su 86.3 4 8.7E-05 43.5 9.5 39 274-312 3-48 (334)
479 TIGR03345 VI_ClpV1 type VI sec 86.1 3.7 8E-05 49.5 10.2 21 289-309 209-229 (852)
480 cd00268 DEADc DEAD-box helicas 86.0 5.3 0.00011 38.8 9.8 73 513-589 68-150 (203)
481 cd03221 ABCF_EF-3 ABCF_EF-3 E 86.0 4.5 9.8E-05 37.3 8.7 31 399-429 86-116 (144)
482 cd03239 ABC_SMC_head The struc 86.0 0.98 2.1E-05 43.5 4.4 31 399-429 114-144 (178)
483 KOG0298 DEAD box-containing he 86.0 1.2 2.5E-05 53.9 5.6 94 514-612 1221-1315(1394)
484 PRK06904 replicative DNA helic 85.9 12 0.00026 42.0 13.5 111 291-414 224-347 (472)
485 PF14516 AAA_35: AAA-like doma 85.8 8 0.00017 41.2 11.6 118 274-416 16-142 (331)
486 PHA03372 DNA packaging termina 85.7 14 0.00031 42.0 13.5 119 288-432 202-326 (668)
487 PRK13850 type IV secretion sys 85.5 0.96 2.1E-05 52.6 4.7 56 289-361 140-195 (670)
488 KOG1806 DEAD box containing he 85.4 1.5 3.2E-05 51.8 6.0 72 270-350 735-806 (1320)
489 PRK09376 rho transcription ter 85.3 4.4 9.5E-05 43.8 9.1 26 287-313 168-193 (416)
490 PRK06090 DNA polymerase III su 85.2 8.3 0.00018 40.8 11.1 40 273-312 3-49 (319)
491 TIGR02640 gas_vesic_GvpN gas v 85.1 1.1 2.3E-05 46.1 4.5 28 280-307 13-40 (262)
492 COG0464 SpoVK ATPases of the A 85.1 11 0.00023 42.6 12.9 63 243-309 231-297 (494)
493 COG0210 UvrD Superfamily I DNA 85.0 3.5 7.6E-05 48.3 9.2 71 273-352 2-72 (655)
494 cd01123 Rad51_DMC1_radA Rad51_ 84.9 4.2 9.1E-05 40.7 8.6 24 288-311 19-42 (235)
495 PRK05439 pantothenate kinase; 84.9 6.2 0.00014 41.5 10.0 19 221-239 9-27 (311)
496 KOG0729 26S proteasome regulat 84.6 7.4 0.00016 39.4 9.7 57 251-308 174-231 (435)
497 PRK07413 hypothetical protein; 84.6 64 0.0014 34.9 18.1 245 291-569 22-310 (382)
498 PRK09435 membrane ATPase/prote 84.6 24 0.00051 37.6 14.3 14 290-303 58-71 (332)
499 TIGR03345 VI_ClpV1 type VI sec 84.6 2.8 6.1E-05 50.5 8.2 17 291-307 599-615 (852)
500 CHL00095 clpC Clp protease ATP 84.5 1.7 3.8E-05 52.2 6.5 20 290-309 541-560 (821)
No 1
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6e-133 Score=1032.09 Aligned_cols=568 Identities=60% Similarity=0.951 Sum_probs=533.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccCCCCCceeeeeccCCCCCccccccccCCchhhhhccccccccCcchHHHHHHHHhh
Q 038133 93 ERERELELIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKN 172 (671)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (671)
+.++++.+|+++|||..+.|||+.+++.++||+||||++||||.||||||+.+|+++ +||||++||+|..+|+|..+.|
T Consensus 96 ~~~K~~~ai~~rylg~~k~kkkk~r~~~~~kf~fdWda~edT~~d~~~l~~~~~~i~-~fgrG~~ag~d~~~qkk~~s~~ 174 (673)
T KOG0333|consen 96 DDEKEVRAIKERYLGEVKPKKKKGRRLNDKKFVFDWDASEDTSNDYNPLYSSRHDIQ-LFGRGFVAGIDVKEQKKEKSKY 174 (673)
T ss_pred hHHHHHHHHHHHHhcccCccccccccccccceEEeecccccccccchhhhcCcccch-hhccccccccchHHHHhhhhhh
Confidence 368999999999999999777777777788999999999999999999999999999 7999999999999999998889
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhhhccccccccCCCChhhhhccCHHHHHHHHhhcCcccccCCCCCCCCC
Q 038133 173 EKEMREEIRKKEGVEEKPEEAAALKLKEEAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRN 252 (671)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~g~~ip~pi~~ 252 (671)
+.++++++++.++. +..+......+..+.. .++++||+++.+++|+++||++|+++|+|+++|+.+|+|+++
T Consensus 175 ~~~~e~r~t~~~ke--~~~~~~qk~~k~~~k~------~~DdrhW~~k~l~Em~~rdwri~redynis~kg~~lpnplrn 246 (673)
T KOG0333|consen 175 GEMMEKRRTEDEKE--QEEELLQKVCKKEAKS------GWDDRHWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRN 246 (673)
T ss_pred hhHhhhhcchhhhh--hHHHHHHHhhhhhhhc------cccccchhhhhHHhcCCccceeeecceeeeecCCCCCccccC
Confidence 99988888776421 1222223333333333 257999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCc-ccccCCCeEE
Q 038133 253 WAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISE-ENEAEGPYAV 331 (671)
Q Consensus 253 f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~-~~~~~g~~vL 331 (671)
|+|.+||.+++++|...||..|+|||++|||.+++++|+|++|+||||||++|++|++.++..+|++.. .+...||+++
T Consensus 247 wEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyai 326 (673)
T KOG0333|consen 247 WEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAI 326 (673)
T ss_pred hhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceee
Confidence 999999999999999999999999999999999999999999999999999999999999999999885 5778999999
Q ss_pred EEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccc
Q 038133 332 VMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 411 (671)
Q Consensus 332 il~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah 411 (671)
||+|||+||+||.++..+|++.+|++++.++||.+.+++.+.+..||+|+|+||++|+++|++.++.+++|.|||+||||
T Consensus 327 ilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead 406 (673)
T KOG0333|consen 327 ILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD 406 (673)
T ss_pred eechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCChHHHHHHHHhCCCCCCCCCCchhh--------hhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCC
Q 038133 412 RMIDMGFEPQVVGVLDAMPSSNLKPENEDEE--------LDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG 483 (671)
Q Consensus 412 ~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~--------~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~ 483 (671)
+|+|+||++++..|+.+||..|.+++.+... +.....++|++||||||||.++.+++.||.+|++++++..+
T Consensus 407 rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~g 486 (673)
T KOG0333|consen 407 RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAG 486 (673)
T ss_pred hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCC
Confidence 9999999999999999999999998766432 33456899999999999999999999999999999999999
Q ss_pred ccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcC
Q 038133 484 KATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563 (671)
Q Consensus 484 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g 563 (671)
...+.+.|.+.++.++.|+..|..+|.+...+|+|||+|+++.|+.||+.|.+.|+.+++|||+.++++|+.+++.|++|
T Consensus 487 k~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~ 566 (673)
T KOG0333|consen 487 KPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREG 566 (673)
T ss_pred CCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc-CCCCCh
Q 038133 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS-NSPVPP 642 (671)
Q Consensus 564 ~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~-~~~vp~ 642 (671)
..+||||||++++|||||+|++||||||++|+++|+||||||||+|+.|+|++|++++|.++||+|++.|.++ .+.+|+
T Consensus 567 t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~ 646 (673)
T KOG0333|consen 567 TGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPP 646 (673)
T ss_pred CCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976 899999
Q ss_pred hHHhchhccCCCCCCCCCCCCCCCcccc
Q 038133 643 ELAKHEASKFKPGTIPDRPPRRNDTVFA 670 (671)
Q Consensus 643 ~L~~~~~~~~~~g~i~~~~~~~~~~~~~ 670 (671)
+|++|+.+++++|++..++ +.+++||+
T Consensus 647 Ela~h~~a~~K~~~~~~k~-~~~e~i~~ 673 (673)
T KOG0333|consen 647 ELANHPDAQFKPGTIKAKK-REPETIRY 673 (673)
T ss_pred hhccChhhccccccccccc-cCcccccC
Confidence 9999999999999999997 99999985
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-74 Score=617.49 Aligned_cols=385 Identities=43% Similarity=0.730 Sum_probs=360.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhc-CCCCCcccccCCCeE
Q 038133 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISR-LPPISEENEAEGPYA 330 (671)
Q Consensus 252 ~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~-~~~~~~~~~~~g~~v 330 (671)
.|++++|+++...++...||..|||||++.||.++.|+|++++|.||||||++|++|++.++.. .+.. ....+|.+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~---~~~~~P~v 168 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKL---SRGDGPIV 168 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccc---cCCCCCeE
Confidence 5666677888888888999999999999999999999999999999999999999999999986 3322 34579999
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEccc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEA 410 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEa 410 (671)
|||+||||||.|+..++.+|...++++++|++||.+...|...+..|++|+|+|||+|.++++...+.|++|.|+|+|||
T Consensus 169 LVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA 248 (519)
T KOG0331|consen 169 LVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA 248 (519)
T ss_pred EEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCC--ccccc
Q 038133 411 DRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG--KATEL 488 (671)
Q Consensus 411 h~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~--~~~~~ 488 (671)
|+|+++||++++..|+..++.. .+|++|+|||||..+..++..|+.+|..+.++... .+...
T Consensus 249 DrMldmGFe~qI~~Il~~i~~~----------------~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~ 312 (519)
T KOG0331|consen 249 DRMLDMGFEPQIRKILSQIPRP----------------DRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHN 312 (519)
T ss_pred HhhhccccHHHHHHHHHhcCCC----------------cccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcc
Confidence 9999999999999999999553 56999999999999999999999999999998664 67788
Q ss_pred eeEEEEEeccchhHHHHHHHHHHh---CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCC
Q 038133 489 ISQHVVMMKESEKFSRLQRLLDEL---GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRY 565 (671)
Q Consensus 489 i~~~~~~~~~~~k~~~L~~ll~~~---~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~ 565 (671)
+.|.+..+....|...|..+|... .++++||||++++.|+.|+..|...++++..+||+++|.+|+.+|+.|++|.+
T Consensus 313 i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~ 392 (519)
T KOG0331|consen 313 IRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKS 392 (519)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCc
Confidence 999999999999999999999876 36799999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCCChhHH
Q 038133 566 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELA 645 (671)
Q Consensus 566 ~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~ 645 (671)
.||||||+++||||||+|++|||||+|.++++|+||+|||||+|+.|.|++|++..+......+...+.+.++.+|+.|.
T Consensus 393 ~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~ 472 (519)
T KOG0331|consen 393 PVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLL 472 (519)
T ss_pred ceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhccCCCC
Q 038133 646 KHEASKFKPG 655 (671)
Q Consensus 646 ~~~~~~~~~g 655 (671)
.+.......+
T Consensus 473 ~~~~~~~~~~ 482 (519)
T KOG0331|consen 473 EYARVSGSGG 482 (519)
T ss_pred HHHhhcccCC
Confidence 8866654443
No 3
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3.4e-74 Score=575.03 Aligned_cols=422 Identities=39% Similarity=0.701 Sum_probs=396.9
Q ss_pred ccccccCCCCh-hhhhccCHHHHHHHHhhcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC
Q 038133 209 FDMRVDRHWSE-KKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQ 287 (671)
Q Consensus 209 ~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~ 287 (671)
|...-.+.|.+ ..+-.|++++.+..|..+.|.+.|..||+|+++|.++.+|..+++.+++.|+..|||||.|.+|.+|+
T Consensus 127 Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLs 206 (610)
T KOG0341|consen 127 YEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLS 206 (610)
T ss_pred ccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEee
Confidence 44455677866 46789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcC------cEEEEE
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLG------IKVVSI 361 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~------i~v~~~ 361 (671)
|||+|++|-||||||++|++|++...+.+...-.-..+.||+.||+||+|+||.|+++.+..|+..+. +++..+
T Consensus 207 GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~Lc 286 (610)
T KOG0341|consen 207 GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLC 286 (610)
T ss_pred cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 99999999999999999999999888765444444557899999999999999999999999887663 688899
Q ss_pred ECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchh
Q 038133 362 VGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDE 441 (671)
Q Consensus 362 ~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~ 441 (671)
.||.+..++...++.|.+|+|+|||+|.++|.+....|.-|.|+++||||+|+|+||+..+..|+..+..
T Consensus 287 iGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~---------- 356 (610)
T KOG0341|consen 287 IGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG---------- 356 (610)
T ss_pred hcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEe
Q 038133 442 ELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFV 521 (671)
Q Consensus 442 ~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~ 521 (671)
-+|+++||||||..+..++++-|..|+.+.++..+.+.-++.|.+.++....|...|++.|... .+|+||||
T Consensus 357 -------QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT-~PpVLIFa 428 (610)
T KOG0341|consen 357 -------QRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT-SPPVLIFA 428 (610)
T ss_pred -------hhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC-CCceEEEe
Confidence 5999999999999999999999999999999999999999999999999999999999999874 78999999
Q ss_pred cChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHH
Q 038133 522 NTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHR 601 (671)
Q Consensus 522 ~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~Qr 601 (671)
..+..++.+.++|--.|+.++.+|||..|++|..+++.|+.|+.+||||||+++.|+|+|++.+|||||||..+++|+||
T Consensus 429 EkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHR 508 (610)
T KOG0341|consen 429 EKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHR 508 (610)
T ss_pred ccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCccEEEEEecCC-CchHHHHHHHHHHhcCCCCChhHHhch
Q 038133 602 IGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPELAKHE 648 (671)
Q Consensus 602 iGR~gR~G~~g~ai~~~~~~-d~~~~~~l~~~l~~~~~~vp~~L~~~~ 648 (671)
|||+||.|+.|.|.+|+... +...+.+|+.+|.+..+.+|+.|..+.
T Consensus 509 IGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~ 556 (610)
T KOG0341|consen 509 IGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELA 556 (610)
T ss_pred hcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhC
Confidence 99999999999999999864 568899999999999999999998764
No 4
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-71 Score=554.33 Aligned_cols=410 Identities=40% Similarity=0.683 Sum_probs=376.8
Q ss_pred hhhhccCHHHHHHHHh-hcCcccc------cCCCCCCCCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcE
Q 038133 220 KKLEEMTERDWRIFRE-DFNISYK------GSKIPRPMRNWAE-GKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDV 291 (671)
Q Consensus 220 ~~~~~~~~~~~~~f~~-~~~i~~~------g~~ip~pi~~f~e-~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ 291 (671)
.+...|++.+...+++ .|+|.+. -..||+|..+|++ ++..+++++.|.+.||..|||||.||||++|+|.|+
T Consensus 181 ~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~Dl 260 (629)
T KOG0336|consen 181 NETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDL 260 (629)
T ss_pred chhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcce
Confidence 4566788888777665 4777663 2469999999988 789999999999999999999999999999999999
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHH
Q 038133 292 IGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQG 371 (671)
Q Consensus 292 ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 371 (671)
|++|.||+|||++||+|.+.++..+|...+ ...+|.+|+++||++||.|+.-++.++. .-|+..++++||.+..++.
T Consensus 261 iGVAQTgtgKtL~~L~pg~ihi~aqp~~~~--qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqi 337 (629)
T KOG0336|consen 261 IGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQI 337 (629)
T ss_pred EEEEecCCCcCHHHhccceeeeeccchhhh--ccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHH
Confidence 999999999999999999998877765543 3578999999999999999999888864 4588999999999999999
Q ss_pred HHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcce
Q 038133 372 FRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRT 451 (671)
Q Consensus 372 ~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q 451 (671)
..+..|.+|+|+||++|.++...+.+++..+.|||+||||+|+||||++++..|+--+.+ .+|
T Consensus 338 e~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRP-----------------DRq 400 (629)
T KOG0336|consen 338 EDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRP-----------------DRQ 400 (629)
T ss_pred HHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCC-----------------cce
Confidence 999999999999999999999999999999999999999999999999999999988877 799
Q ss_pred EEEEeccCCHHHHHHHHHhcCCCeEEEECCCCc-cccceeEEEEEeccchhHHHHHHHHHHhC-CCcEEEEecChhhHHH
Q 038133 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGK-ATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNTKKNADM 529 (671)
Q Consensus 452 ~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~-~~~~i~~~~~~~~~~~k~~~L~~ll~~~~-~~~iIVF~~~~~~~~~ 529 (671)
++|.|||||+.+.+++.+|+.+|.++.+++... +...+.|.+....+..|+..+..++.... ..++||||.++..++.
T Consensus 401 tvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~ 480 (629)
T KOG0336|consen 401 TVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADH 480 (629)
T ss_pred eeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhh
Confidence 999999999999999999999999999998875 45567777766688889988888887764 7899999999999999
Q ss_pred HHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCC
Q 038133 530 VAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 609 (671)
Q Consensus 530 l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G 609 (671)
|...|.-.|+.+..+||+-.|.+|+.+++.|++|.++||||||++++|||+|+++||+|||+|.+++.|+||+||+||+|
T Consensus 481 LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG 560 (629)
T KOG0336|consen 481 LSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAG 560 (629)
T ss_pred ccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCC
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEecCCCchHHHHHHHHHHhcCCCCChhHHhchh
Q 038133 610 KTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEA 649 (671)
Q Consensus 610 ~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~~~~ 649 (671)
+.|.+++|++-.|...+..|.+.|.+.++.||++|..+..
T Consensus 561 r~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAe 600 (629)
T KOG0336|consen 561 RTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAE 600 (629)
T ss_pred CCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHH
Confidence 9999999999999999999999999999999999987643
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-70 Score=550.34 Aligned_cols=369 Identities=40% Similarity=0.632 Sum_probs=353.7
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCC
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP 328 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~ 328 (671)
...+|.++++.+.+++++...|+..||++|.++||.++.|+|+|+.|+||||||.+|++|++..++..| ..+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p--------~~~ 130 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP--------KLF 130 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC--------CCc
Confidence 346789999999999999999999999999999999999999999999999999999999999998755 569
Q ss_pred eEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHh-hcccccCCccEEEE
Q 038133 329 YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLE-RRYAVLNQCNYVVL 407 (671)
Q Consensus 329 ~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~-~~~~~l~~~~~vVi 407 (671)
++|||+||||||.||.+.+..+....|+++.+++||.....+...+...++|+|+|||+|++.++ .+...+.++.|+|+
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998 45667999999999
Q ss_pred cccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCcccc
Q 038133 408 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATE 487 (671)
Q Consensus 408 DEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~ 487 (671)
||||+++|+.|.+.+..|+..+|. .+|+++|||||+..+..+...-+.+|..+.........+
T Consensus 211 DEADrlLd~dF~~~ld~ILk~ip~-----------------erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~ 273 (476)
T KOG0330|consen 211 DEADRLLDMDFEEELDYILKVIPR-----------------ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVD 273 (476)
T ss_pred chHHhhhhhhhHHHHHHHHHhcCc-----------------cceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchH
Confidence 999999999999999999999996 699999999999999999999999999999999999999
Q ss_pred ceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcE
Q 038133 488 LISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNV 567 (671)
Q Consensus 488 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~V 567 (671)
.+.|.+.++....|...|..+|++..+.++||||++..++..++-.|...|+.+..+||.|++..|.-+++.|++|..+|
T Consensus 274 ~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~i 353 (476)
T KOG0330|consen 274 HLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSI 353 (476)
T ss_pred HhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcE
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcC--CCCCh
Q 038133 568 LVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN--SPVPP 642 (671)
Q Consensus 568 LVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~--~~vp~ 642 (671)
|||||+++||+|||.|++|||||+|.+..+|+||+||+||+|.+|.+|+|++..|.+.+..|...+.+.. -+++.
T Consensus 354 Lv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 354 LVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred EEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 9999999999999999999999999999999999999999999999999999999999999999998874 34555
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.6e-68 Score=600.44 Aligned_cols=412 Identities=41% Similarity=0.684 Sum_probs=380.9
Q ss_pred hhhhhccCHHHHHHHHhhcCccc-ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCC
Q 038133 219 EKKLEEMTERDWRIFREDFNISY-KGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAET 297 (671)
Q Consensus 219 ~~~~~~~~~~~~~~f~~~~~i~~-~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~T 297 (671)
...+..|++++++.|+....+.+ .|..+|.|+.+|.++++++.++++|...||..|||+|.++||.+++|+|+|++|||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApT 176 (545)
T PTZ00110 97 HPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAET 176 (545)
T ss_pred ChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 35677899999999999999886 69999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcC
Q 038133 298 GSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377 (671)
Q Consensus 298 GsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~ 377 (671)
|||||++|++|++..+...+... ...++.+||||||++||.|+.+.+.+|....++++.+++||.....+...+..+
T Consensus 177 GSGKTlaylLP~l~~i~~~~~~~---~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~ 253 (545)
T PTZ00110 177 GSGKTLAFLLPAIVHINAQPLLR---YGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRG 253 (545)
T ss_pred CChHHHHHHHHHHHHHHhccccc---CCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcC
Confidence 99999999999999887543221 245899999999999999999999999999999999999999998888889999
Q ss_pred CeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEec
Q 038133 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSA 457 (671)
Q Consensus 378 ~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SA 457 (671)
++|+|+||++|.+++.+....+.++++|||||||+|++++|++++..|+..++. .+|+++|||
T Consensus 254 ~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~-----------------~~q~l~~SA 316 (545)
T PTZ00110 254 VEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP-----------------DRQTLMWSA 316 (545)
T ss_pred CCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCC-----------------CCeEEEEEe
Confidence 999999999999999988888999999999999999999999999999998865 589999999
Q ss_pred cCCHHHHHHHHHhcC-CCeEEEECCCC-ccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHH
Q 038133 458 TMPPAVERLARKYLR-NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKN 533 (671)
Q Consensus 458 T~~~~~~~l~~~~l~-~p~~i~i~~~~-~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~ 533 (671)
|+|..++.++..++. .|..+.++... .....+.+.+..+.+..|...|..++... .+.++||||++++.|+.++..
T Consensus 317 T~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~ 396 (545)
T PTZ00110 317 TWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKE 396 (545)
T ss_pred CCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHH
Confidence 999999999999886 57777776654 34456778888888888899999888875 467999999999999999999
Q ss_pred HHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccE
Q 038133 534 LDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGV 613 (671)
Q Consensus 534 L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ 613 (671)
|...++.+..+||++++.+|+.+++.|++|..+|||||+++++|||||+|++|||||+|.++.+|+||+||+||+|+.|.
T Consensus 397 L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ 476 (545)
T PTZ00110 397 LRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA 476 (545)
T ss_pred HHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCchHHHHHHHHHHhcCCCCChhHHhchhc
Q 038133 614 ATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEAS 650 (671)
Q Consensus 614 ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~~~~~ 650 (671)
|++|+++++.....+|.+.|.+..+.||++|.++...
T Consensus 477 ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~ 513 (545)
T PTZ00110 477 SYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNE 513 (545)
T ss_pred EEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999998543
No 7
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-69 Score=556.78 Aligned_cols=410 Identities=44% Similarity=0.682 Sum_probs=392.2
Q ss_pred hhhhhccCHHHHHHHHhhcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCC
Q 038133 219 EKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298 (671)
Q Consensus 219 ~~~~~~~~~~~~~~f~~~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TG 298 (671)
...+..|++.+...++..+++.+.|...|+|+.+|..+++...|+.++...-|..|||+|.+++|..+.|+|+|.+|-||
T Consensus 191 ~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktg 270 (731)
T KOG0339|consen 191 HESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTG 270 (731)
T ss_pred hhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeecc
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCC
Q 038133 299 SGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC 378 (671)
Q Consensus 299 sGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~ 378 (671)
||||.+|+.|++.+++.++.+. .++||..||||||++||.|++.++++|++.+|+++++++||.+..+|...|..+|
T Consensus 271 SgktaAfi~pm~~himdq~eL~---~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~ 347 (731)
T KOG0339|consen 271 SGKTAAFIWPMIVHIMDQPELK---PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGA 347 (731)
T ss_pred CcchhHHHHHHHHHhcchhhhc---CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCC
Confidence 9999999999999999887654 3689999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEecc
Q 038133 379 EVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSAT 458 (671)
Q Consensus 379 ~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 458 (671)
+||||||++|++++.-....+.+++||||||+++|+++||++++..|..++.+ .+|+++||||
T Consensus 348 EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirp-----------------drQtllFsaT 410 (731)
T KOG0339|consen 348 EIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRP-----------------DRQTLLFSAT 410 (731)
T ss_pred eEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCC-----------------cceEEEeecc
Confidence 99999999999999999999999999999999999999999999999999987 7999999999
Q ss_pred CCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEe-ccchhHHHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHH
Q 038133 459 MPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM-KESEKFSRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDK 536 (671)
Q Consensus 459 ~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~-~~~~k~~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~ 536 (671)
++..++.+++.+|.+|+-+..+..+.+...|.|.|..+ ++..|+..|..-|... ..+++||||.-+..++.++..|.-
T Consensus 411 f~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lkl 490 (731)
T KOG0339|consen 411 FKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKL 490 (731)
T ss_pred chHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcc
Confidence 99999999999999999999999999999999998877 5667888887777665 478999999999999999999999
Q ss_pred cCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEE
Q 038133 537 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 616 (671)
Q Consensus 537 ~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~ 616 (671)
.++.|..+||+|.|.+|.+++..|+.+...|||+||++.+|+|||++.+|||||+..+++.|+|||||+||+|.+|++|+
T Consensus 491 k~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayT 570 (731)
T KOG0339|consen 491 KGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYT 570 (731)
T ss_pred ccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCchHHHHHHHHHHhcCCCCChhHHhch
Q 038133 617 FLTFHDTDVFYDLKQMLIQSNSPVPPELAKHE 648 (671)
Q Consensus 617 ~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~~~ 648 (671)
|+|..|..+.-.|.+.|..+++.||++|.++.
T Consensus 571 lvTeKDa~fAG~LVnnLe~agQnVP~~l~dla 602 (731)
T KOG0339|consen 571 LVTEKDAEFAGHLVNNLEGAGQNVPDELMDLA 602 (731)
T ss_pred EechhhHHHhhHHHHHHhhccccCChHHHHHH
Confidence 99999999999999999999999999999874
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=9.6e-68 Score=592.32 Aligned_cols=407 Identities=34% Similarity=0.611 Sum_probs=377.1
Q ss_pred hccCHHHHHHHHhhcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHH
Q 038133 223 EEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKT 302 (671)
Q Consensus 223 ~~~~~~~~~~f~~~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT 302 (671)
..|+.++++.|++.++|.+.|..+|.|+.+|.+++|++.++++|...||..|||+|.+|||.+++|+|+|++||||||||
T Consensus 93 ~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKT 172 (518)
T PLN00206 93 SGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKT 172 (518)
T ss_pred ccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCcc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEE
Q 038133 303 AAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVI 382 (671)
Q Consensus 303 ~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI 382 (671)
++|++|++.++....... .....++++|||+||++||.|+++.+..+...+++.++.++||.....+...+..+++|+|
T Consensus 173 layllPil~~l~~~~~~~-~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV 251 (518)
T PLN00206 173 ASFLVPIISRCCTIRSGH-PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIV 251 (518)
T ss_pred HHHHHHHHHHHHhhcccc-ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEE
Confidence 999999999876432111 1123678999999999999999999999999999999999999998888888888999999
Q ss_pred EcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHH
Q 038133 383 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPA 462 (671)
Q Consensus 383 ~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 462 (671)
+||++|.+++.+....++++.+|||||||+|++++|...+..++..++ ..|+++||||+++.
T Consensus 252 ~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~------------------~~q~l~~SATl~~~ 313 (518)
T PLN00206 252 GTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS------------------QPQVLLFSATVSPE 313 (518)
T ss_pred ECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC------------------CCcEEEEEeeCCHH
Confidence 999999999998888899999999999999999999999999988775 36899999999999
Q ss_pred HHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhC--CCcEEEEecChhhHHHHHHHHHH-cCC
Q 038133 463 VERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG--DKTAIVFVNTKKNADMVAKNLDK-LGY 539 (671)
Q Consensus 463 ~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~--~~~iIVF~~~~~~~~~l~~~L~~-~~~ 539 (671)
++.++..++.++..+.++........+.+.+..+....+...|..++.... .+++||||+++..++.+++.|.. .++
T Consensus 314 v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~ 393 (518)
T PLN00206 314 VEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGL 393 (518)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCc
Confidence 999999999999999998877777778888888888888888888887643 46899999999999999999975 589
Q ss_pred eEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEec
Q 038133 540 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619 (671)
Q Consensus 540 ~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~ 619 (671)
.+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++|||||+|.++.+|+||+|||||.|..|.|++|++
T Consensus 394 ~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~ 473 (518)
T PLN00206 394 KALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVN 473 (518)
T ss_pred ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhcCCCCChhHHhch
Q 038133 620 FHDTDVFYDLKQMLIQSNSPVPPELAKHE 648 (671)
Q Consensus 620 ~~d~~~~~~l~~~l~~~~~~vp~~L~~~~ 648 (671)
+++...+.+|.+.+..+++.+|++|.+++
T Consensus 474 ~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 474 EEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred hhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 99999999999999999999999999998
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-66 Score=577.11 Aligned_cols=372 Identities=45% Similarity=0.710 Sum_probs=345.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
.+|.+++|++.++++|.+.||..|||||.++||.++.|+|++++|+||||||++|++|++..+.... ......+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------~~~~~~a 102 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------ERKYVSA 102 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc------ccCCCce
Confidence 7799999999999999999999999999999999999999999999999999999999999976320 0111119
Q ss_pred EEEecchhhHHHHHHHHHHHHhhc-CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
||++|||+||.|+++.+..++... ++++++++||.+...+...+..+++|||+|||+|++++.+..+.++.+.++|+||
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEecc
Confidence 999999999999999999999999 7999999999999999999988999999999999999999999999999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCc--ccc
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK--ATE 487 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~--~~~ 487 (671)
||+|+++||.+.+..|+..+|. .+|+++||||+|..+..++..|+.+|..+.+..... ...
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~-----------------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~ 245 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPP-----------------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLK 245 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCc-----------------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccccccccc
Confidence 9999999999999999999987 599999999999999999999999999998885555 788
Q ss_pred ceeEEEEEeccch-hHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCc
Q 038133 488 LISQHVVMMKESE-KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN 566 (671)
Q Consensus 488 ~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~ 566 (671)
.+.|.+..+.... |...|..++.......+||||+++..|+.|+..|...|+.+..+||+|+|.+|..+++.|++|.++
T Consensus 246 ~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~ 325 (513)
T COG0513 246 KIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR 325 (513)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC
Confidence 8999999998765 999999999987777899999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCC-CchHHHHHHHHHHhc---CCCCCh
Q 038133 567 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQS---NSPVPP 642 (671)
Q Consensus 567 VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~-d~~~~~~l~~~l~~~---~~~vp~ 642 (671)
||||||+++||||||++++|||||+|.+++.|+||+|||||+|..|.+++|+++. +...+..+...+... ...+|.
T Consensus 326 vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~ 405 (513)
T COG0513 326 VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPL 405 (513)
T ss_pred EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCc
Confidence 9999999999999999999999999999999999999999999999999999986 889999999987665 245554
Q ss_pred hHH
Q 038133 643 ELA 645 (671)
Q Consensus 643 ~L~ 645 (671)
...
T Consensus 406 ~~~ 408 (513)
T COG0513 406 DEP 408 (513)
T ss_pred chh
Confidence 433
No 10
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-67 Score=550.80 Aligned_cols=399 Identities=40% Similarity=0.697 Sum_probs=372.6
Q ss_pred CcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCC
Q 038133 238 NISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317 (671)
Q Consensus 238 ~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~ 317 (671)
...+.|..+|.++..|.+..+.+.+..++...||..|||+|+.+||.+..|+++++||+||||||.+|++|++.+++...
T Consensus 61 ~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~ 140 (482)
T KOG0335|consen 61 PVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEG 140 (482)
T ss_pred eeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcC
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCcccc--cCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc
Q 038133 318 PISEENE--AEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR 395 (671)
Q Consensus 318 ~~~~~~~--~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~ 395 (671)
+...... ...|.+||++|||+||.|++.++.+|.-..+++++.++||.+...+...+..+|+|+|+|||+|.+++++.
T Consensus 141 ~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g 220 (482)
T KOG0335|consen 141 PEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG 220 (482)
T ss_pred cccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc
Confidence 4332111 24699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCC-
Q 038133 396 YAVLNQCNYVVLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRN- 473 (671)
Q Consensus 396 ~~~l~~~~~vViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~- 473 (671)
.+.|.+|.|+||||||+|+| ++|++++..|+......... .+|++|||||.|..+..++..++.+
T Consensus 221 ~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~-------------~~qt~mFSAtfp~~iq~l~~~fl~~~ 287 (482)
T KOG0335|consen 221 KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKN-------------NRQTLLFSATFPKEIQRLAADFLKDN 287 (482)
T ss_pred eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCcc-------------ceeEEEEeccCChhhhhhHHHHhhcc
Confidence 99999999999999999999 99999999999987653322 6899999999999999999999997
Q ss_pred CeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhC----CC-----cEEEEecChhhHHHHHHHHHHcCCeEEEe
Q 038133 474 PVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG----DK-----TAIVFVNTKKNADMVAKNLDKLGYRVTTL 544 (671)
Q Consensus 474 p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~----~~-----~iIVF~~~~~~~~~l~~~L~~~~~~v~~l 544 (671)
.+.+.++..+....++.|.+.++.+..|...|+++|.... .+ .++|||.+++.|+.++..|...++++..+
T Consensus 288 yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sI 367 (482)
T KOG0335|consen 288 YIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSI 367 (482)
T ss_pred ceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceee
Confidence 8899999999999999999999999999999999998643 23 79999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCch
Q 038133 545 HGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624 (671)
Q Consensus 545 hg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~ 624 (671)
||..++.+|+.++..|++|.+.|||||++++||||||+|.+|||||+|.++.+|+||||||||.|+.|.++.|+...+..
T Consensus 368 hg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~ 447 (482)
T KOG0335|consen 368 HGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQN 447 (482)
T ss_pred cchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhHHhchh
Q 038133 625 VFYDLKQMLIQSNSPVPPELAKHEA 649 (671)
Q Consensus 625 ~~~~l~~~l~~~~~~vp~~L~~~~~ 649 (671)
+...|..+|.++++.+|+||.....
T Consensus 448 i~~~L~~~l~ea~q~vP~wl~~~~~ 472 (482)
T KOG0335|consen 448 IAKALVEILTEANQEVPQWLSELSR 472 (482)
T ss_pred hHHHHHHHHHHhcccCcHHHHhhhh
Confidence 9999999999999999999998433
No 11
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-66 Score=531.59 Aligned_cols=362 Identities=39% Similarity=0.589 Sum_probs=338.2
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCe
Q 038133 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPY 329 (671)
Q Consensus 250 i~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~ 329 (671)
..+|.+++|+..++++|..+||..|||||..+||..|.|+|++.||.||||||.+|++|+|..++-.|.. ....+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TR 254 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-----VAATR 254 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-----Cccee
Confidence 3479999999999999999999999999999999999999999999999999999999999998765522 24678
Q ss_pred EEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcc-cccCCccEEEEc
Q 038133 330 AVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY-AVLNQCNYVVLD 408 (671)
Q Consensus 330 vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~-~~l~~~~~vViD 408 (671)
||||||||+||.|+++.+++++.+..|.++.++||.+...|...|+..++|||+|||+|++.+.+.. ..++++.++|+|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999997654 568999999999
Q ss_pred ccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccc
Q 038133 409 EADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATEL 488 (671)
Q Consensus 409 Eah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~ 488 (671)
|||+|++.+|..++..|+..+|. .+|+++|||||+..+..++.-.|..|+-+.+.+.......
T Consensus 335 EADRMLeegFademnEii~lcpk-----------------~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~ 397 (691)
T KOG0338|consen 335 EADRMLEEGFADEMNEIIRLCPK-----------------NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPK 397 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhccc-----------------cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchh
Confidence 99999999999999999999988 6999999999999999999999999999999999888888
Q ss_pred eeEEEEEec---cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCC
Q 038133 489 ISQHVVMMK---ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRY 565 (671)
Q Consensus 489 i~~~~~~~~---~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~ 565 (671)
+.|.++.+. +..+-..|..++.......+|||+.+++.|..+.-.|--+|+.++-+||.++|.+|-..++.|+++++
T Consensus 398 LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~ei 477 (691)
T KOG0338|consen 398 LTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEI 477 (691)
T ss_pred hhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccC
Confidence 888877663 45566777888887778899999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHH
Q 038133 566 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQML 633 (671)
Q Consensus 566 ~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l 633 (671)
+||||||+++|||||++|.+||||+||.++..|+||+||+.|+|+.|.+++|+...|..++..+...-
T Consensus 478 dvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 478 DVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred CEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999988888877664
No 12
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-64 Score=487.62 Aligned_cols=379 Identities=34% Similarity=0.578 Sum_probs=358.1
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCccc
Q 038133 244 SKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEEN 323 (671)
Q Consensus 244 ~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~ 323 (671)
+.-..++.+|++++|.++++++|...||..|+.+|..|||.++.|+|+|..|..|+|||.+|.+.++..+..
T Consensus 20 s~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~-------- 91 (400)
T KOG0328|consen 20 SEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI-------- 91 (400)
T ss_pred ccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc--------
Confidence 344567889999999999999999999999999999999999999999999999999999998888776532
Q ss_pred ccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCcc
Q 038133 324 EAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCN 403 (671)
Q Consensus 324 ~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~ 403 (671)
....-++||+.|||+||.|+...+..++.++++.+..+.||.+..+....+.-|++++.+|||++.+++.+..+.-..+.
T Consensus 92 ~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vk 171 (400)
T KOG0328|consen 92 SVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVK 171 (400)
T ss_pred ccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcccccccee
Confidence 23457899999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred EEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCC
Q 038133 404 YVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG 483 (671)
Q Consensus 404 ~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~ 483 (671)
++|+||||.|++.||..++..|+.++|+ ..|++++|||+|..+..+...|+.+|+.+.+...+
T Consensus 172 mlVLDEaDemL~kgfk~Qiydiyr~lp~-----------------~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrde 234 (400)
T KOG0328|consen 172 MLVLDEADEMLNKGFKEQIYDIYRYLPP-----------------GAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDE 234 (400)
T ss_pred EEEeccHHHHHHhhHHHHHHHHHHhCCC-----------------CceEEEEeccCcHHHHHHHHHhcCCceeEEEecCC
Confidence 9999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred ccccceeEEEEEec-cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhc
Q 038133 484 KATELISQHVVMMK-ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT 562 (671)
Q Consensus 484 ~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~ 562 (671)
...+.+.|.++.+. +..|+..|.++.....-.+++||||++..+++|.+.+.+.++.+..+||+|.+++|+.++..|++
T Consensus 235 ltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs 314 (400)
T KOG0328|consen 235 LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS 314 (400)
T ss_pred CchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc
Confidence 99999999888875 55699999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCCCh
Q 038133 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPP 642 (671)
Q Consensus 563 g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~ 642 (671)
|..+||++||+.+||||+|.|++|||||.|.+.+.|+|||||.||.|++|+|+.|+..+|...+.++.+++.-...+.|.
T Consensus 315 g~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 315 GKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred CCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred hHHhc
Q 038133 643 ELAKH 647 (671)
Q Consensus 643 ~L~~~ 647 (671)
.+++.
T Consensus 395 nvad~ 399 (400)
T KOG0328|consen 395 NVADL 399 (400)
T ss_pred hhhhc
Confidence 76653
No 13
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-64 Score=564.73 Aligned_cols=409 Identities=42% Similarity=0.728 Sum_probs=388.0
Q ss_pred hhhhccCHHHHHHHHhhcC-cccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCC
Q 038133 220 KKLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298 (671)
Q Consensus 220 ~~~~~~~~~~~~~f~~~~~-i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TG 298 (671)
..+..|+..+...++.... |.++|..+|.|+.+|.+.|++..++..++++||..|+|||.||||+|++|+|+|++|.||
T Consensus 333 ~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTg 412 (997)
T KOG0334|consen 333 RDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTG 412 (997)
T ss_pred hhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccC
Confidence 6788899999999998876 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCC
Q 038133 299 SGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC 378 (671)
Q Consensus 299 sGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~ 378 (671)
||||++|++|++.++..+|++.. +.||.+||+|||++||.||.+++.+|++.+++++++++||.....+...+..|+
T Consensus 413 SGKT~af~LPmirhi~dQr~~~~---gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~ 489 (997)
T KOG0334|consen 413 SGKTLAFLLPMIRHIKDQRPLEE---GDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGA 489 (997)
T ss_pred CccchhhhcchhhhhhcCCChhh---CCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCC
Confidence 99999999999999998887653 569999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcchHHHHHHhhcc---cccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEE
Q 038133 379 EVVIATPGRLIDCLERRY---AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMF 455 (671)
Q Consensus 379 ~IiI~Tp~~L~~~l~~~~---~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~ 455 (671)
+|+|||||++++++-.+. ..+.++.|||+||||+|++++|+|++..|+..+++ .+|+++|
T Consensus 490 eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrp-----------------drQtvlf 552 (997)
T KOG0334|consen 490 EIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRP-----------------DRQTVLF 552 (997)
T ss_pred ceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcch-----------------hhhhhhh
Confidence 999999999999886543 35667779999999999999999999999999976 7999999
Q ss_pred eccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEec-cchhHHHHHHHHHHhC-CCcEEEEecChhhHHHHHHH
Q 038133 456 SATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK-ESEKFSRLQRLLDELG-DKTAIVFVNTKKNADMVAKN 533 (671)
Q Consensus 456 SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~-~~~iIVF~~~~~~~~~l~~~ 533 (671)
|||+|..++.+++..+..|+.+.++........+.+.+..+. +..|+..|.++|.... .+++||||.....|+.+.+.
T Consensus 553 Satfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~ 632 (997)
T KOG0334|consen 553 SATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRD 632 (997)
T ss_pred hhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHH
Confidence 999999999999999999999999988888999999999997 9999999999998754 88999999999999999999
Q ss_pred HHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccE
Q 038133 534 LDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGV 613 (671)
Q Consensus 534 L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ 613 (671)
|.+.|+.+..+||+.++.+|..+++.|++|.+.+||||+++++|+|++.+.+|||||+|...++|+||.|||||+|++|.
T Consensus 633 L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~ 712 (997)
T KOG0334|consen 633 LQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGA 712 (997)
T ss_pred HHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCchHHHHHHHHHHhcCCCCChhHHhch
Q 038133 614 ATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHE 648 (671)
Q Consensus 614 ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~~~ 648 (671)
|++|+++++..+..+|..++..++.++|..|..+.
T Consensus 713 AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~ 747 (997)
T KOG0334|consen 713 AVTFITPDQLKYAGDLCKALELSKQPVPKLLQALS 747 (997)
T ss_pred eEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHH
Confidence 99999999999999999999999999998776553
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.4e-62 Score=534.93 Aligned_cols=373 Identities=37% Similarity=0.550 Sum_probs=338.8
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCC
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP 328 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~ 328 (671)
+-.+|++++|++.+++++...||..|+|+|.+|||.+++|+|++++||||||||++|++|++..+...+.... ....++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~ 84 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQP 84 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCc
Confidence 3468999999999999999999999999999999999999999999999999999999999998876442211 113578
Q ss_pred eEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEc
Q 038133 329 YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLD 408 (671)
Q Consensus 329 ~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViD 408 (671)
++|||+||++||.|+++.+..++...++++..++||.+...+...+..+++|+|+||++|.+++....+.++++++||||
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 99999999999999999999999999999999999999888887888889999999999999998888889999999999
Q ss_pred ccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccc
Q 038133 409 EADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATEL 488 (671)
Q Consensus 409 Eah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~ 488 (671)
|||+|++++|...+..++..++... .+++++||||++..+..++..++.+|..+.+.........
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~~---------------~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~ 229 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPAN---------------QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHR 229 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCcc---------------ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCc
Confidence 9999999999999999999887521 3678999999999999999999999998888766655666
Q ss_pred eeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEE
Q 038133 489 ISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568 (671)
Q Consensus 489 i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VL 568 (671)
+.+.+.......|...|..++......++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|+++||
T Consensus 230 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vL 309 (423)
T PRK04837 230 IKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDIL 309 (423)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEE
Confidence 76766666777888889998887667899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcC
Q 038133 569 VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637 (671)
Q Consensus 569 VaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~ 637 (671)
|||+++++|||+|++++|||||+|.++..|+||+||+||.|+.|.|++|+++++...+..+.+++....
T Consensus 310 VaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 310 VATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred EEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999888888888776653
No 15
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-64 Score=489.94 Aligned_cols=368 Identities=34% Similarity=0.594 Sum_probs=351.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEE
Q 038133 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAV 331 (671)
Q Consensus 252 ~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vL 331 (671)
.|+++.|..+++..|.+.||+.|+|+|.++||+++.|+|++.-|..|+|||.+|++|++..+.. ....-+++
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~--------~~~~IQ~~ 157 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP--------KKNVIQAI 157 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc--------cccceeEE
Confidence 5889999999999999999999999999999999999999999999999999999999998842 34678899
Q ss_pred EEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccc
Q 038133 332 VMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 411 (671)
Q Consensus 332 il~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah 411 (671)
|+||||+||.|+...+..+.+.+++.+...+||++..+...++..+.+++|+|||+++++..+....++.|.++|+||||
T Consensus 158 ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 158 ILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD 237 (459)
T ss_pred EEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeE
Q 038133 412 RMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQ 491 (671)
Q Consensus 412 ~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~ 491 (671)
.+++..|.+.+..++..+|. .+|+++||||+|-.+..+...|+.+|..+..-. ......+.|
T Consensus 238 KlLs~~F~~~~e~li~~lP~-----------------~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQ 299 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPK-----------------ERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQ 299 (459)
T ss_pred hhhchhhhhHHHHHHHhCCc-----------------cceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhh
Confidence 99999999999999999998 699999999999999999999999998887653 345567899
Q ss_pred EEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEec
Q 038133 492 HVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571 (671)
Q Consensus 492 ~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT 571 (671)
++.++.+..|...|-.++....-.+.|||||+...++.+|+.+.++|+.|..+|+.|-|+.|..++..|++|.++.||||
T Consensus 300 yYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVct 379 (459)
T KOG0326|consen 300 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCT 379 (459)
T ss_pred heeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeeh
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCCChhHH
Q 038133 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELA 645 (671)
Q Consensus 572 ~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~ 645 (671)
|.+.|||||+++++|||||+|.+.++|.|||||.||.|..|.|+.+++.+|...++.+.+.|....+++|+.+.
T Consensus 380 DL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 380 DLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred hhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997654
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.2e-60 Score=528.29 Aligned_cols=361 Identities=37% Similarity=0.593 Sum_probs=333.3
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCe
Q 038133 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPY 329 (671)
Q Consensus 250 i~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~ 329 (671)
+.+|.+++|++.++++|..+||..|||+|.+|||.+++|+|+|++||||||||++|++|++..+... ..+++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--------~~~~~ 74 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--------RFRVQ 74 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--------cCCce
Confidence 3579999999999999999999999999999999999999999999999999999999999987531 23668
Q ss_pred EEEEecchhhHHHHHHHHHHHHhhc-CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEc
Q 038133 330 AVVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLD 408 (671)
Q Consensus 330 vLil~Ptr~La~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViD 408 (671)
+||++||++||.|+.+++..++... ++++..++||.+...+...+..+++|+|+||++|.+++.+....++++++||||
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 9999999999999999999988765 789999999999988888888899999999999999999888889999999999
Q ss_pred ccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccc
Q 038133 409 EADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATEL 488 (671)
Q Consensus 409 Eah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~ 488 (671)
|||+|++++|...+..++..++. .+|+++||||+|+.+..++..++.+|..+.+..... ...
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~-----------------~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~-~~~ 216 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPA-----------------RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD-LPA 216 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCc-----------------ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC-CCC
Confidence 99999999999999999999876 589999999999999999999999999888766543 344
Q ss_pred eeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEE
Q 038133 489 ISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568 (671)
Q Consensus 489 i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VL 568 (671)
+.+.+..+....|...|..++....+.++||||+++..|+.+++.|...++.+..+||+|++.+|+.+++.|++|.++||
T Consensus 217 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vL 296 (460)
T PRK11776 217 IEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVL 296 (460)
T ss_pred eeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 77777777777799999999988778899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 569 VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 569 VaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
|||+++++|||+|++++||+||+|.+...|+||+||+||+|+.|.|++|+++.+...+..+.+.+...
T Consensus 297 VaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~ 364 (460)
T PRK11776 297 VATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRK 364 (460)
T ss_pred EEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999988888888776553
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.5e-60 Score=524.89 Aligned_cols=366 Identities=39% Similarity=0.661 Sum_probs=335.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEE
Q 038133 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAV 331 (671)
Q Consensus 252 ~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vL 331 (671)
+|++++|++.++++|.+.||..|||+|.++||.+++++|+|++||||||||++|++|++..+....... .....+++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~--~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA--KGRRPVRAL 79 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc--ccCCCceEE
Confidence 688899999999999999999999999999999999999999999999999999999999886432110 112346899
Q ss_pred EEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccc
Q 038133 332 VMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 411 (671)
Q Consensus 332 il~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah 411 (671)
||+||++||.|+.+.+..++..+++.+..++||.+...+...+..+++|+|+||++|++++......++++++|||||||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 99999999999999999999999999999999999888888888889999999999999998888889999999999999
Q ss_pred hhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeE
Q 038133 412 RMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQ 491 (671)
Q Consensus 412 ~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~ 491 (671)
+|++++|...+..++..++. .+|+++||||+++.+..++..++.+|..+.+.........+.+
T Consensus 160 ~ll~~~~~~~i~~il~~l~~-----------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~ 222 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPA-----------------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQ 222 (456)
T ss_pred HHhccccHHHHHHHHHhCCc-----------------cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeE
Confidence 99999999999999988875 5799999999999999999999999998887766666677888
Q ss_pred EEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEec
Q 038133 492 HVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571 (671)
Q Consensus 492 ~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT 571 (671)
.+.++....+...|..++......++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|.++|||||
T Consensus 223 ~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 302 (456)
T PRK10590 223 HVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 302 (456)
T ss_pred EEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 88888877788888888877667899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 572 ~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
+++++|||||+|++||||++|.++.+|+||+||+||+|..|.|++|++.++...+..+...+...
T Consensus 303 dv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 303 DIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred cHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999988887654
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.1e-60 Score=536.88 Aligned_cols=360 Identities=40% Similarity=0.642 Sum_probs=332.9
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
.+|.+++|++.++++|.++||..|+|+|.++||.++.++|+|++||||||||++|++|++..+.. ...++++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~--------~~~~~~~ 77 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP--------ELKAPQI 77 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh--------ccCCCeE
Confidence 46899999999999999999999999999999999999999999999999999999999988753 1256899
Q ss_pred EEEecchhhHHHHHHHHHHHHhhc-CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
||||||++||.|+++.+..+...+ ++.++.++||.+...+...+..+++|||+||++|++++.+..+.++++.+|||||
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDE 157 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDE 157 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEecc
Confidence 999999999999999999998776 7999999999998888888888999999999999999998888899999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccce
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i 489 (671)
||.|++++|...+..++..++. ..|+++||||+|+.+..++..|+.+|..+.+.........+
T Consensus 158 Ad~ml~~gf~~di~~Il~~lp~-----------------~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i 220 (629)
T PRK11634 158 ADEMLRMGFIEDVETIMAQIPE-----------------GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDI 220 (629)
T ss_pred HHHHhhcccHHHHHHHHHhCCC-----------------CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCce
Confidence 9999999999999999999876 58899999999999999999999999988887766666677
Q ss_pred eEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q 038133 490 SQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569 (671)
Q Consensus 490 ~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLV 569 (671)
.+.+..+....|...|..+|.......+||||+++..++.++..|...++.+..+||+|++.+|+.+++.|++|+++|||
T Consensus 221 ~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILV 300 (629)
T PRK11634 221 SQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 (629)
T ss_pred EEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 78777777778899999999877678999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHh
Q 038133 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635 (671)
Q Consensus 570 aT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~ 635 (671)
||+++++|||+|+|++|||||+|.+++.|+||+|||||+|+.|.|++|+++.+...+..+.+.+..
T Consensus 301 ATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~ 366 (629)
T PRK11634 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 (629)
T ss_pred EcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998887777777665443
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.3e-60 Score=532.47 Aligned_cols=370 Identities=38% Similarity=0.592 Sum_probs=334.3
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
.+|.+++|++.++++|...||..|||+|.++||.++.|+|+|++||||||||++|++|++..+...+.... ....++++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~-~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALAD-RKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccc-cccCCceE
Confidence 46999999999999999999999999999999999999999999999999999999999998865332111 11236899
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc-ccccCCccEEEEcc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR-YAVLNQCNYVVLDE 409 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~-~~~l~~~~~vViDE 409 (671)
|||+||++||.|++..+.++...+++++..++|+.....+...+..+++|||+||++|++++.+. .+.+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999999999999999999988887778888999999999999998765 45688999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccce
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i 489 (671)
||+|++++|...+..++..++... .+|+++||||++..+..++..++.+|..+.+.........+
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~---------------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i 232 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERG---------------TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARV 232 (572)
T ss_pred HHHHhhcchHHHHHHHHHhccccc---------------CceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccce
Confidence 999999999999999999887521 47899999999999999999999998877776655555667
Q ss_pred eEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q 038133 490 SQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569 (671)
Q Consensus 490 ~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLV 569 (671)
.+.+.......+...|..++....+.++|||||++..|+.|++.|...++.+..+||+|++.+|..+++.|++|+++|||
T Consensus 233 ~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLV 312 (572)
T PRK04537 233 RQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILV 312 (572)
T ss_pred eEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 77777777788888899998877788999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 570 aT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
||+++++|||+|+|++|||||+|.++.+|+||+||+||.|+.|.|++|+++.+...+.++.+++...
T Consensus 313 aTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 313 ATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred EehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999998888888888776654
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-59 Score=483.05 Aligned_cols=354 Identities=39% Similarity=0.595 Sum_probs=318.9
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccC--C
Q 038133 252 NWAEGK--LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE--G 327 (671)
Q Consensus 252 ~f~e~~--l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~--g 327 (671)
.|++++ |++++++++...||..+||.|..+||.++.++|+++-|+||||||++|++|++..+.... .... .
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~-----~~~~~~~ 79 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRRE-----AKTPPGQ 79 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhc-----cCCCccc
Confidence 455544 559999999999999999999999999999999999999999999999999999995421 1111 2
Q ss_pred CeEEEEecchhhHHHHHHHHHHHHhh-cCcEEEEEECCCchHHHHHHHhc-CCeEEEEcchHHHHHHhhccccc--CCcc
Q 038133 328 PYAVVMAPTRELAQQIEEETVKFAHY-LGIKVVSIVGGQSIEEQGFRIRQ-GCEVVIATPGRLIDCLERRYAVL--NQCN 403 (671)
Q Consensus 328 ~~vLil~Ptr~La~Qi~~~~~k~~~~-~~i~v~~~~gg~~~~~~~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l--~~~~ 403 (671)
--+|||+|||+||.||.+.+..|... .++++.+++||.+.++....+.. ++.|+|||||+|.+++.+....+ .+|.
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 35899999999999999999999888 67899999999998887776654 68999999999999998865444 4999
Q ss_pred EEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCC
Q 038133 404 YVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG 483 (671)
Q Consensus 404 ~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~ 483 (671)
++|+||||+++++||+..++.|+..+|. .+.|-+||||+...+..+.+..|++|..|.+....
T Consensus 160 ~LVLDEADrLldmgFe~~~n~ILs~LPK-----------------QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~ 222 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTILSFLPK-----------------QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKS 222 (567)
T ss_pred eEEecchHhHhcccHHHHHHHHHHhccc-----------------ccccccccchhhHHHHHHHHhhccCceeeeecccc
Confidence 9999999999999999999999999998 58899999999999999999999999999998776
Q ss_pred c--cccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc--CCeEEEecCCCCHHHHHHHHHH
Q 038133 484 K--ATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL--GYRVTTLHGGKSQEQREISLEG 559 (671)
Q Consensus 484 ~--~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~l~~ 559 (671)
. .+..+...+..+....|+..|.++|......++|||+++...++.....|... ...+..+||.|.+.+|..+++.
T Consensus 223 ~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~ 302 (567)
T KOG0345|consen 223 KSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEA 302 (567)
T ss_pred cccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHH
Confidence 5 55556677778888999999999999988999999999999999999999877 6789999999999999999999
Q ss_pred hhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHH
Q 038133 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFY 627 (671)
Q Consensus 560 F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~ 627 (671)
|....-.||+|||+++||||||+|++||+||+|.++..|+||+|||||+|+.|.|++|+.+.+.++..
T Consensus 303 F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 303 FRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred HHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999996655543
No 21
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-60 Score=470.19 Aligned_cols=365 Identities=35% Similarity=0.564 Sum_probs=333.3
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCC
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP 328 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~ 328 (671)
...+|..+||.+.+.+.++.+|...|||+|..+||.+|.|+|+|+||.||||||++|.+|++..+...| .|.
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP--------~gi 76 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP--------YGI 76 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC--------Ccc
Confidence 356789999999999999999999999999999999999999999999999999999999999998755 799
Q ss_pred eEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcc----cccCCccE
Q 038133 329 YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY----AVLNQCNY 404 (671)
Q Consensus 329 ~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~----~~l~~~~~ 404 (671)
.++|+.|||+||.|+.+.|..+.+.+++++..++||.+.-.+...|....+|||+|||+|.+.+..+. ..+.++.|
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkf 156 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKF 156 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceee
Confidence 99999999999999999999999999999999999999999999999999999999999999987762 35889999
Q ss_pred EEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCC--CeEEEECCC
Q 038133 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRN--PVVVTIGTA 482 (671)
Q Consensus 405 vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~--p~~i~i~~~ 482 (671)
+|+||||+|++..|...+..+...+|. .+|+++||||+...+..+..--... ...+.....
T Consensus 157 lVlDEADrvL~~~f~d~L~~i~e~lP~-----------------~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~ 219 (442)
T KOG0340|consen 157 LVLDEADRVLAGCFPDILEGIEECLPK-----------------PRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDG 219 (442)
T ss_pred EEecchhhhhccchhhHHhhhhccCCC-----------------ccceEEEEeehhhHHHHhhcCCcccccceEEeccCC
Confidence 999999999999999999999999988 5899999999988877654433333 223333345
Q ss_pred CccccceeEEEEEeccchhHHHHHHHHHHhC---CCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHH
Q 038133 483 GKATELISQHVVMMKESEKFSRLQRLLDELG---DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559 (671)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~---~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~ 559 (671)
.+..+...+.+..++...+-..|..+|.... .+.++||+|+..+|+.|+-.|+.+++.++.+||.|+|.+|-.++..
T Consensus 220 vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsr 299 (442)
T KOG0340|consen 220 VSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSR 299 (442)
T ss_pred CCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHH
Confidence 5667778899999999999999999987653 5789999999999999999999999999999999999999999999
Q ss_pred hhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCC
Q 038133 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNS 638 (671)
Q Consensus 560 F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~ 638 (671)
|+++...||||||+++||+|||.|.+|||||.|.++.+|+||+||+.|+|+.|.+++|++..|.+....+.+.+.+.-.
T Consensus 300 Frs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~ 378 (442)
T KOG0340|consen 300 FRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLT 378 (442)
T ss_pred HhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877643
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.8e-58 Score=509.73 Aligned_cols=364 Identities=36% Similarity=0.561 Sum_probs=330.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEE
Q 038133 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAV 331 (671)
Q Consensus 252 ~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vL 331 (671)
+|+++++++.+++++.+.||..|+++|.++||.++.|+|+|++||||+|||++|++|++.++...+.. ...++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~l 77 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR----KSGPPRIL 77 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc----CCCCceEE
Confidence 68999999999999999999999999999999999999999999999999999999999998754321 12457899
Q ss_pred EEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccc
Q 038133 332 VMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 411 (671)
Q Consensus 332 il~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah 411 (671)
||+||++||.|+++.+..++..+++.+..++||.....+...+..+++|+|+||++|++++......+.++++|||||||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah 157 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD 157 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH
Confidence 99999999999999999999999999999999999888877777889999999999999998888888999999999999
Q ss_pred hhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCH-HHHHHHHHhcCCCeEEEECCCCcccccee
Q 038133 412 RMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP-AVERLARKYLRNPVVVTIGTAGKATELIS 490 (671)
Q Consensus 412 ~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~-~~~~l~~~~l~~p~~i~i~~~~~~~~~i~ 490 (671)
+|++++|...+..+...++. ..|+++||||++. .+..++..++.+|..+...........+.
T Consensus 158 ~~l~~~~~~~~~~i~~~~~~-----------------~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 220 (434)
T PRK11192 158 RMLDMGFAQDIETIAAETRW-----------------RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIH 220 (434)
T ss_pred HHhCCCcHHHHHHHHHhCcc-----------------ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCce
Confidence 99999999999999887764 5789999999985 57888888999999888776666666666
Q ss_pred EEEEEec-cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q 038133 491 QHVVMMK-ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569 (671)
Q Consensus 491 ~~~~~~~-~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLV 569 (671)
+.+.... ...+...|..++......++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|.++|||
T Consensus 221 ~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLV 300 (434)
T PRK11192 221 QWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLV 300 (434)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 6666554 356778888888765678999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 570 aT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
||+++++|||+|++++|||||+|.+...|+||+||+||+|..|.|++|++..|...+..+..++...
T Consensus 301 aTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 301 ATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred EccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999988877654
No 23
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2e-59 Score=484.37 Aligned_cols=360 Identities=36% Similarity=0.606 Sum_probs=331.5
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
..|++..|++..+++|..+||..+|++|...||.++.|+|+++.|-||||||++|++|+++++...++.. ..+-.+
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~----r~~~~v 157 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP----RNGTGV 157 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC----CCCeeE
Confidence 4567789999999999999999999999999999999999999999999999999999999998766443 367889
Q ss_pred EEEecchhhHHHHHHHHHHHHhhc-CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc-ccCCccEEEEc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA-VLNQCNYVVLD 408 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~-~l~~~~~vViD 408 (671)
|||||||+||.|++.+++++.... ++.+..++||.+.......+..+|+|+|+|||+|.|.+++... ...++.++|+|
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlD 237 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLD 237 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEee
Confidence 999999999999999999999998 8999999999998888888888999999999999999988654 35566899999
Q ss_pred ccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCC-CeEEEECCCC--cc
Q 038133 409 EADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRN-PVVVTIGTAG--KA 485 (671)
Q Consensus 409 Eah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~-p~~i~i~~~~--~~ 485 (671)
|||+++++||+..+..|+..+|. .+|+++||||+++.++.+++.-|.. |.++.....+ ..
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk-----------------~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~T 300 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPK-----------------QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERET 300 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccc-----------------cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcch
Confidence 99999999999999999999986 6999999999999999999887765 7777665443 55
Q ss_pred ccceeEEEEEeccchhHHHHHHHHHHhCC-CcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC
Q 038133 486 TELISQHVVMMKESEKFSRLQRLLDELGD-KTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR 564 (671)
Q Consensus 486 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~-~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~ 564 (671)
.+.+.|.+.......++..+..+|+.... .++||||++...+..+++.|....++|..+||+++|..|..+...|++.+
T Consensus 301 he~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kae 380 (543)
T KOG0342|consen 301 HERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAE 380 (543)
T ss_pred hhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcc
Confidence 67788888888777778999999988765 89999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHH
Q 038133 565 YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQ 631 (671)
Q Consensus 565 ~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~ 631 (671)
.-||||||+++||+|+|+|+.||.||+|.++.+|+||+|||||.|+.|.+++|+.+.+..++..|+.
T Consensus 381 sgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 381 SGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred cceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999988883
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-57 Score=505.39 Aligned_cols=383 Identities=37% Similarity=0.614 Sum_probs=341.5
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCC
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP 328 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~ 328 (671)
....|.+++|++.+.++|.+.||..|+++|.++|+.+++|+|+|+++|||||||++|++|++..+...+... ......+
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~-~~~~~~~ 163 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK-ERYMGEP 163 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc-ccccCCc
Confidence 345688899999999999999999999999999999999999999999999999999999999887643211 1112358
Q ss_pred eEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHh-cCCeEEEEcchHHHHHHhhcccccCCccEEEE
Q 038133 329 YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIR-QGCEVVIATPGRLIDCLERRYAVLNQCNYVVL 407 (671)
Q Consensus 329 ~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vVi 407 (671)
++|||+||++||.|+++.+..+...+++.+..++||.+...+...+. ..++|+|+||++|.+++.++...++++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 99999999999999999999999999999999999988777766664 46899999999999999888888999999999
Q ss_pred cccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCcccc
Q 038133 408 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATE 487 (671)
Q Consensus 408 DEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~ 487 (671)
||||++++++|.+.+..++..++... .+|++++|||++..+..++..++.+|..+.+........
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~---------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 308 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKE---------------ERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASD 308 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCC---------------CceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCC
Confidence 99999999999999999998876421 368999999999999999999999999888877666666
Q ss_pred ceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcE
Q 038133 488 LISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNV 567 (671)
Q Consensus 488 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~V 567 (671)
.+.+.+..+....+...|..++......++||||+++..++.++..|...++.+..+||++++++|..+++.|++|+++|
T Consensus 309 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~v 388 (475)
T PRK01297 309 TVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRV 388 (475)
T ss_pred cccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcE
Confidence 77778877778888888988888766789999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcC-CCC-ChhHH
Q 038133 568 LVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPV-PPELA 645 (671)
Q Consensus 568 LVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~-~~v-p~~L~ 645 (671)
||||+++++|||||++++||+|++|.|+.+|+||+||+||.|+.|.+++|++.+|..++..+.+++.... ..+ |.+|.
T Consensus 389 LvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T PRK01297 389 LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELL 468 (475)
T ss_pred EEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHh
Confidence 9999999999999999999999999999999999999999999999999999998888889988887663 444 45666
Q ss_pred hc
Q 038133 646 KH 647 (671)
Q Consensus 646 ~~ 647 (671)
..
T Consensus 469 ~~ 470 (475)
T PRK01297 469 KP 470 (475)
T ss_pred hh
Confidence 54
No 25
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-57 Score=474.55 Aligned_cols=354 Identities=33% Similarity=0.525 Sum_probs=328.3
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
..|.++.|+...+++|++.+|..||.+|+++||..|+|+|+|+.|-||||||++|++|+|..+....+.. .+|--+
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~----~DGlGa 144 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP----TDGLGA 144 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC----CCCcee
Confidence 3467779999999999999999999999999999999999999999999999999999999998765543 478889
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc-ccccCCccEEEEcc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR-YAVLNQCNYVVLDE 409 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~-~~~l~~~~~vViDE 409 (671)
|||.|||+||.|+++.+.++++..++.+..++||.........+ ++++|+|||||+|+..+... .+.-+++.++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999876665554 57999999999999988654 44678899999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCC--Ccccc
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTA--GKATE 487 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~--~~~~~ 487 (671)
||+|+||||...+..|+..+|. .+|+++||||....+..+++..+.+|.+|.+... ...+.
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~-----------------~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~ 286 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPK-----------------KRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPS 286 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCCh-----------------hheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChh
Confidence 9999999999999999999998 6999999999999999999999999999999844 35667
Q ss_pred ceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc--CCeEEEecCCCCHHHHHHHHHHhhcCCC
Q 038133 488 LISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL--GYRVTTLHGGKSQEQREISLEGFRTKRY 565 (671)
Q Consensus 488 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~l~~F~~g~~ 565 (671)
.+.|.++.+....|+..|...+..+...++|||+.+.+.+..++..+.++ |+++..+||.|+|..|-.+...|.....
T Consensus 287 ~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~ 366 (758)
T KOG0343|consen 287 NLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA 366 (758)
T ss_pred hhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcc
Confidence 88999999999999999999999998999999999999999999999988 8999999999999999999999999999
Q ss_pred cEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHH
Q 038133 566 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVF 626 (671)
Q Consensus 566 ~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~ 626 (671)
-||+|||+++||+|+|.|++||.+|.|.++.+|+||+||+.|.+..|.|++++++.+.+.+
T Consensus 367 ~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~ 427 (758)
T KOG0343|consen 367 VVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAM 427 (758)
T ss_pred eEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999984433
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-57 Score=468.80 Aligned_cols=382 Identities=32% Similarity=0.510 Sum_probs=322.8
Q ss_pred CCCCCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCccccc
Q 038133 247 PRPMRNWAEGKLTPELLRAVER-VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325 (671)
Q Consensus 247 p~pi~~f~e~~l~~~i~~~i~~-~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~ 325 (671)
|-.-..|..+||++.+...|.. +++..||.+|.++||.+++|+|++|.++||||||++|++|+++.+...++.-. ..
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~--Rs 209 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ--RS 209 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc--cc
Confidence 3344578999999999999954 69999999999999999999999999999999999999999999987654432 46
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCc-EEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc-ccccCCcc
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGI-KVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR-YAVLNQCN 403 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i-~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~-~~~l~~~~ 403 (671)
+|+++||||||||||.|+|+.+.++.+++.. -.+.+.||........+++.|++|+|+|||+|.|.|.+- .+.++++.
T Consensus 210 ~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LR 289 (708)
T KOG0348|consen 210 DGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLR 289 (708)
T ss_pred CCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeee
Confidence 8999999999999999999999999888663 345678999888888899999999999999999999764 45688999
Q ss_pred EEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCC-
Q 038133 404 YVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTA- 482 (671)
Q Consensus 404 ~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~- 482 (671)
|||+||+|+++++||+..+..|+..+.... +..+.....+.-.|.+++|||+...+.+++..-|.+|.+|..+..
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v~~~~----~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~ 365 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAVHSIQ----NAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSH 365 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHHhhcc----chhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchh
Confidence 999999999999999999999999885421 111111222234789999999999999999999999999882211
Q ss_pred ------------------------CccccceeEEEEEeccchhHHHHHHHHHHh----CCCcEEEEecChhhHHHHHHHH
Q 038133 483 ------------------------GKATELISQHVVMMKESEKFSRLQRLLDEL----GDKTAIVFVNTKKNADMVAKNL 534 (671)
Q Consensus 483 ------------------------~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~----~~~~iIVF~~~~~~~~~l~~~L 534 (671)
...++.+.|.+..+...-++..|..+|... ...++|||+.+.+.++.-+..|
T Consensus 366 ~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf 445 (708)
T KOG0348|consen 366 SQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLF 445 (708)
T ss_pred hhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHH
Confidence 122334556667777777777777777543 4668999999999988877777
Q ss_pred HHc----------------------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCC
Q 038133 535 DKL----------------------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP 592 (671)
Q Consensus 535 ~~~----------------------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p 592 (671)
... +.++..+||+|+|++|..+++.|....-.||+|||+++||||+|+|.+||.||+|
T Consensus 446 ~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P 525 (708)
T KOG0348|consen 446 SEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPP 525 (708)
T ss_pred HhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCC
Confidence 432 4568899999999999999999999888899999999999999999999999999
Q ss_pred CCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHH
Q 038133 593 GNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLI 634 (671)
Q Consensus 593 ~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~ 634 (671)
.+.++|+||+||+.|+|.+|.+++|+.+.+.+++..|+....
T Consensus 526 ~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 526 FSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred CCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 999999999999999999999999999999997777766543
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=8.4e-56 Score=484.15 Aligned_cols=371 Identities=34% Similarity=0.589 Sum_probs=332.1
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCe
Q 038133 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPY 329 (671)
Q Consensus 250 i~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~ 329 (671)
..+|.++++++.+.+++...||..|+|+|.+||+.++.++|++++||||||||++|++|++..+.. ...+++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~--------~~~~~~ 98 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY--------DLNACQ 98 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC--------CCCCce
Confidence 567899999999999999999999999999999999999999999999999999999999988742 124778
Q ss_pred EEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 330 AVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 330 vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
+|||+||++||.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||++|.+.+.+....++++++|||||
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 99999999999999999999998888999999999988877777888899999999999999988888899999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccce
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i 489 (671)
||++.+.+|...+..++..++. ..|++++|||+|+.+..+...++.+|..+.+.........+
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPP-----------------DVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGI 241 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCC-----------------CcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCc
Confidence 9999999999888888887765 57899999999999999999999999887766555445555
Q ss_pred eEEEEEecc-chhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEE
Q 038133 490 SQHVVMMKE-SEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568 (671)
Q Consensus 490 ~~~~~~~~~-~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VL 568 (671)
.+.+..+.. ..+...+..++......++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|.++||
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vL 321 (401)
T PTZ00424 242 RQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVL 321 (401)
T ss_pred eEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 555555433 4466777777777667889999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCCChhHH
Q 038133 569 VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELA 645 (671)
Q Consensus 569 VaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~ 645 (671)
|||+++++|||+|++++||+|++|.++..|.||+||+||.|+.|.|++|+++++...+..+.+.+.......|....
T Consensus 322 vaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 398 (401)
T PTZ00424 322 ITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVA 398 (401)
T ss_pred EEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999998888766666665443
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-56 Score=456.89 Aligned_cols=367 Identities=29% Similarity=0.508 Sum_probs=334.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
.+|++++|.+.++++|.++|+..||-+|..|||.+|.|+|+++.|-||||||++|++|+++.+....... ....|+.+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSA 96 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--ccccccee
Confidence 4788899999999999999999999999999999999999999999999999999999999998765443 34589999
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcC--cEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcc-cccCCccEEEE
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLG--IKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY-AVLNQCNYVVL 407 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~--i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~-~~l~~~~~vVi 407 (671)
+|||||++||+|++..+.++...++ ++++.+....+.......+...++|||+||++++.++..+. ..+..++++|+
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 9999999999999999999887765 67777887777777777888889999999999999998887 67889999999
Q ss_pred cccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCc-cc
Q 038133 408 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK-AT 486 (671)
Q Consensus 408 DEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~-~~ 486 (671)
||||.++..||+..+..+...+|. ..|.++||||+..++..+-..++++|+++....... ..
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr-----------------~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~ 239 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPR-----------------IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNP 239 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCc-----------------hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCc
Confidence 999999999999999999999997 689999999999999999999999999988765543 45
Q ss_pred cceeEEEEEeccchhHHHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCC
Q 038133 487 ELISQHVVMMKESEKFSRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRY 565 (671)
Q Consensus 487 ~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~ 565 (671)
+.+.|+.+.+.+.+|+..+..+++-. -.+++|||+|++..|..|.-.|+..|++.++++|.|+...|--+++.|+.|-+
T Consensus 240 dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Y 319 (569)
T KOG0346|consen 240 DQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLY 319 (569)
T ss_pred ccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcce
Confidence 67888888899999999999888753 48899999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccc-----------------------------------ccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCC
Q 038133 566 NVLVATDV-----------------------------------AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGK 610 (671)
Q Consensus 566 ~VLVaT~~-----------------------------------~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 610 (671)
+++||||. ++||||+.+|+.|||||+|.+...|+||+|||+|+|+
T Consensus 320 divIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n 399 (569)
T KOG0346|consen 320 DIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNN 399 (569)
T ss_pred eEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCC
Confidence 99999991 2399999999999999999999999999999999999
Q ss_pred ccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 611 TGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 611 ~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
+|.+++|+.+.+......|...+...
T Consensus 400 ~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 400 KGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred CCceEEEecchHHhhhhHHHHHHhhH
Confidence 99999999999988777888777653
No 29
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-56 Score=468.29 Aligned_cols=397 Identities=32% Similarity=0.489 Sum_probs=357.9
Q ss_pred HHhhcCcccccCCCCCCCCCccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHH
Q 038133 233 FREDFNISYKGSKIPRPMRNWAE----GKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 233 f~~~~~i~~~g~~ip~pi~~f~e----~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~ 308 (671)
.|..+.+.+.|.++|+|+.+|.+ +...+.++..+..+||..|+|+|++|||.++.+++++.|||||||||++|++|
T Consensus 114 ~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~P 193 (593)
T KOG0344|consen 114 IRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLP 193 (593)
T ss_pred chhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhH
Confidence 46677899999999999999987 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH--hhcCcEEEEEECCCch-HHHHHHHhcCCeEEEEcc
Q 038133 309 MLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA--HYLGIKVVSIVGGQSI-EEQGFRIRQGCEVVIATP 385 (671)
Q Consensus 309 ~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~--~~~~i~v~~~~gg~~~-~~~~~~l~~~~~IiI~Tp 385 (671)
++..+..... .....|-+++|+.||++||.|++.++.++. ...++++......... ..........++|+|+||
T Consensus 194 il~~L~~~~~---~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP 270 (593)
T KOG0344|consen 194 ILQHLKDLSQ---EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTP 270 (593)
T ss_pred HHHHHHHhhc---ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCH
Confidence 9999875332 223568899999999999999999999998 6666666655544222 223333344689999999
Q ss_pred hHHHHHHhhcc--cccCCccEEEEcccchhhcc-CChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHH
Q 038133 386 GRLIDCLERRY--AVLNQCNYVVLDEADRMIDM-GFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPA 462 (671)
Q Consensus 386 ~~L~~~l~~~~--~~l~~~~~vViDEah~~~~~-~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 462 (671)
.++...+.... +.++.+.++|+||+|++++. .|..++..|+..+... ...+-+||||++..
T Consensus 271 ~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~----------------~i~~a~FSat~~~~ 334 (593)
T KOG0344|consen 271 MRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSP----------------DIRVALFSATISVY 334 (593)
T ss_pred HHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCc----------------chhhhhhhccccHH
Confidence 99999998765 57899999999999999999 9999999999988763 34577899999999
Q ss_pred HHHHHHHhcCCCeEEEECCCCccccceeEEEEEe-ccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHH-HHcCCe
Q 038133 463 VERLARKYLRNPVVVTIGTAGKATELISQHVVMM-KESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNL-DKLGYR 540 (671)
Q Consensus 463 ~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~-~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L-~~~~~~ 540 (671)
++.++...+.++..+.+|........+.|...++ ++..|+..+.+++...-.+|+|||+.+++.|..|...| ...++.
T Consensus 335 VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~ 414 (593)
T KOG0344|consen 335 VEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNIN 414 (593)
T ss_pred HHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcc
Confidence 9999999999999999999999999999988887 67889999999999988999999999999999999999 566899
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecC
Q 038133 541 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620 (671)
Q Consensus 541 v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~ 620 (671)
+.++||..++.+|+.+++.|+.|+++|||||++++||||+.++++|||||.|.+...|+|||||+||+|+.|.||+||+.
T Consensus 415 v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd 494 (593)
T KOG0344|consen 415 VDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTD 494 (593)
T ss_pred eeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhcCCCCChhHHhch
Q 038133 621 HDTDVFYDLKQMLIQSNSPVPPELAKHE 648 (671)
Q Consensus 621 ~d~~~~~~l~~~l~~~~~~vp~~L~~~~ 648 (671)
.|......+...+..++..||+++..+.
T Consensus 495 ~d~~~ir~iae~~~~sG~evpe~~m~~~ 522 (593)
T KOG0344|consen 495 QDMPRIRSIAEVMEQSGCEVPEKIMGIK 522 (593)
T ss_pred ccchhhhhHHHHHHHcCCcchHHHHhhh
Confidence 9999999999999999999999988775
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-56 Score=464.35 Aligned_cols=378 Identities=31% Similarity=0.486 Sum_probs=315.4
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCC---cc
Q 038133 247 PRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQ-RDVIGIAETGSGKTAAFVLPMLTYISRLPPIS---EE 322 (671)
Q Consensus 247 p~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~-rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~---~~ 322 (671)
+--+..|..+.+|.+++.+|..+||..||+||.-.||.+..| .|+++.|+||||||++|-+||++.+....... ..
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 345678999999999999999999999999999999999999 79999999999999999999999655432221 11
Q ss_pred cccCCC--eEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc---
Q 038133 323 NEAEGP--YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA--- 397 (671)
Q Consensus 323 ~~~~g~--~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~--- 397 (671)
....++ .+||++|||+||.|+...+..++...++++.+++||.....|...+....+|||+|||+||.+++....
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 222344 499999999999999999999999999999999999999999999988999999999999999976554
Q ss_pred ccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHH---------------
Q 038133 398 VLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPA--------------- 462 (671)
Q Consensus 398 ~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~--------------- 462 (671)
.+.++.++|+||+|||++.|.-..+..++..+.....+ .-+|++.||||++-.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~------------~qrQTlVFSATlt~~~~~~~~~~~k~~~k~ 404 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKN------------RQRQTLVFSATLTLVLQQPLSSSRKKKDKE 404 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcc------------cccceEEEEEEeehhhcChhHHhhhccchh
Confidence 57888999999999999999888999999888633222 258999999998532
Q ss_pred ------HHHHHHH--hcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHH
Q 038133 463 ------VERLARK--YLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNL 534 (671)
Q Consensus 463 ------~~~l~~~--~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L 534 (671)
++.+... +...|.++.+.........+....+.|....|--.|..+|..+ ++.+|||||++..+..|+-+|
T Consensus 405 ~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L 483 (731)
T KOG0347|consen 405 DELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLL 483 (731)
T ss_pred hhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHH
Confidence 2222221 2335555555444443333333333344444444444444443 689999999999999999999
Q ss_pred HHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEE
Q 038133 535 DKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVA 614 (671)
Q Consensus 535 ~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~a 614 (671)
...++....+|+.|.|.+|-..++.|++....||||||+++||||||+|.|||||..|.+.+.|+||.||+.|++..|+.
T Consensus 484 ~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvs 563 (731)
T KOG0347|consen 484 NNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVS 563 (731)
T ss_pred hhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHhcC
Q 038133 615 TTFLTFHDTDVFYDLKQMLIQSN 637 (671)
Q Consensus 615 i~~~~~~d~~~~~~l~~~l~~~~ 637 (671)
+.|+.+.+...+..|..-|.+..
T Consensus 564 vml~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 564 VMLCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred EEEeChHHhHHHHHHHHHHhhcc
Confidence 99999999999999998887763
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-54 Score=430.19 Aligned_cols=373 Identities=32% Similarity=0.533 Sum_probs=332.4
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccC
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE 326 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~--rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~ 326 (671)
...+|++++|.|+++++|..++|..|+.||..|+|.++.. +++|..+..|+|||.+|++.||..+. ....
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd--------~~~~ 159 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD--------PDVV 159 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC--------cccc
Confidence 5678999999999999999999999999999999999975 89999999999999999999998873 2346
Q ss_pred CCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhh-cccccCCccEE
Q 038133 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER-RYAVLNQCNYV 405 (671)
Q Consensus 327 g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~-~~~~l~~~~~v 405 (671)
-|++++|+||++||.|+.+.+.+..+..++.+...+.+....... .+ ..+|+|+|||.+.+++.+ ..+.+..+.++
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~-~i--~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN-KL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC-cc--hhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 799999999999999999999999999988888888776322111 11 257999999999999987 67778999999
Q ss_pred EEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCc
Q 038133 406 VLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK 484 (671)
Q Consensus 406 ViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~ 484 (671)
|+||||.|++ .||.++-..|...+|. ..|+++||||....+..++...++++..+.+.....
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~-----------------~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel 299 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPR-----------------NQQLLLFSATFVEKVAAFALKIVPNANVIILKREEL 299 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCC-----------------cceEEeeechhHHHHHHHHHHhcCCCceeeeehhhc
Confidence 9999999987 5688888888888885 589999999999999999999999999999999999
Q ss_pred cccceeEEEEEe-ccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcC
Q 038133 485 ATELISQHVVMM-KESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563 (671)
Q Consensus 485 ~~~~i~~~~~~~-~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g 563 (671)
....+.|.+..+ .+.+|+..|..+.....-+..||||.+++++.+|+..|...|+.|..+||.|+-.+|..+++.|+.|
T Consensus 300 ~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g 379 (477)
T KOG0332|consen 300 ALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG 379 (477)
T ss_pred cccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC
Confidence 999999988877 5788999999988777788999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccccCCCCCCcEEEEcCCCC------CHHHHHHHhcccCCCCCccEEEEEecCCCc-hHHHHHHHHHHhc
Q 038133 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPG------NIEMYTHRIGRTGRAGKTGVATTFLTFHDT-DVFYDLKQMLIQS 636 (671)
Q Consensus 564 ~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~g~ai~~~~~~d~-~~~~~l~~~l~~~ 636 (671)
..+|||+|++++||||++.|++|||||+|. +.+.|.|||||+||.|+.|.++.|+...+. .++..|.+++...
T Consensus 380 ~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 380 KEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred cceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 999999999999999999999999999996 789999999999999999999999987654 6667888888665
Q ss_pred -CCCCChhHHhchh
Q 038133 637 -NSPVPPELAKHEA 649 (671)
Q Consensus 637 -~~~vp~~L~~~~~ 649 (671)
....|+.+.+.+.
T Consensus 460 i~~~~~~d~~E~ek 473 (477)
T KOG0332|consen 460 IKRLDPDDLDELEK 473 (477)
T ss_pred ceecCCccHHHHHH
Confidence 4566766665543
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-53 Score=429.92 Aligned_cols=369 Identities=33% Similarity=0.566 Sum_probs=344.9
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
.+|++++|++++++.|...||..|+.||..||+.+..|.|+++.+++|+|||.+|.++++..+. ......++
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD--------~~~ke~qa 97 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID--------MSVKETQA 97 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC--------cchHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999998872 22456789
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHh-cCCeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIR-QGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
|+++||++||+|+......+....++++..++||.+...+...+. .+++|+++|||++.+.+....+....+.++|+||
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDE 177 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecc
Confidence 999999999999999999999999999999999988774444444 4699999999999999999888888899999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccce
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i 489 (671)
+|.|+..||.+++..|+..+|. ..|++++|||+|+.+..+.+.++.+|..+.........+.+
T Consensus 178 aDEmLs~gfkdqI~~if~~lp~-----------------~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gi 240 (397)
T KOG0327|consen 178 ADEMLSRGFKDQIYDIFQELPS-----------------DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGI 240 (397)
T ss_pred hHhhhccchHHHHHHHHHHcCc-----------------chhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhhe
Confidence 9999999999999999999998 57999999999999999999999999999999999888999
Q ss_pred eEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q 038133 490 SQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569 (671)
Q Consensus 490 ~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLV 569 (671)
.|.+..+....|+..|.++.. .-...+||||+...+..+...|...++.+..+||.|.+.+|..++..|++|..+|||
T Consensus 241 kq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlI 318 (397)
T KOG0327|consen 241 KQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLI 318 (397)
T ss_pred eeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEe
Confidence 999999988889999999998 467899999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCCChhHHh
Q 038133 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAK 646 (671)
Q Consensus 570 aT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~ 646 (671)
.|+.+++|||+..++.||||+.|...++|+||+||+||.|.+|.++.|++.++...+.++.+++.-....+|....+
T Consensus 319 ttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 319 TTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred eccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888876654
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-52 Score=424.15 Aligned_cols=363 Identities=37% Similarity=0.586 Sum_probs=343.3
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
-+|+.+||...++++|..-||+.|+|+|+..||.+|.++|++..+-||||||.+|++||+..+.... ..|-++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-------~~g~Ra 93 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRA 93 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------ccccce
Confidence 4688899999999999999999999999999999999999999999999999999999999987522 467899
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEccc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEA 410 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEa 410 (671)
+|+.||++||.|....+..+++..++++++++||.+.+++...+..+.||||+||+++..+.-.-.+.|+.+.|||+||+
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA 173 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh
Confidence 99999999999999999999999999999999999999999999889999999999998877666677999999999999
Q ss_pred chhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCcccccee
Q 038133 411 DRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELIS 490 (671)
Q Consensus 411 h~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~ 490 (671)
|+++.+||.+++..++..+|. .+|+++||||+|.....+++..+.+|..+.++......+...
T Consensus 174 drlfemgfqeql~e~l~rl~~-----------------~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk 236 (529)
T KOG0337|consen 174 DRLFEMGFQEQLHEILSRLPE-----------------SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLK 236 (529)
T ss_pred hHHHhhhhHHHHHHHHHhCCC-----------------cceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhh
Confidence 999999999999999999988 589999999999999999999999999999888888888888
Q ss_pred EEEEEeccchhHHHHHHHHHHhC-CCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q 038133 491 QHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569 (671)
Q Consensus 491 ~~~~~~~~~~k~~~L~~ll~~~~-~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLV 569 (671)
..+..+...+|...|+.++.... +..++|||.++.+++.+...|...|+.+..++|.|.+..|..-+..|..+...+||
T Consensus 237 ~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lv 316 (529)
T KOG0337|consen 237 VRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILV 316 (529)
T ss_pred hheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEE
Confidence 88888899999999999998753 56899999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcC
Q 038133 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637 (671)
Q Consensus 570 aT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~ 637 (671)
.|+++.+|+|||-.+.|||||+|.+...|+||+||+.|+|+.|.+|.|+.+++..++.+|.-++.++.
T Consensus 317 vTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~ 384 (529)
T KOG0337|consen 317 VTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPL 384 (529)
T ss_pred EehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999987763
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.9e-50 Score=460.52 Aligned_cols=354 Identities=22% Similarity=0.287 Sum_probs=279.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecc
Q 038133 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPT 336 (671)
Q Consensus 257 ~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Pt 336 (671)
.+++.+.++|.+.||..|+++|.++||.+++|+|+++++|||||||++|++|++..+.. ..++++|||+||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~---------~~~~~aL~l~Pt 90 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD---------DPRATALYLAPT 90 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh---------CCCcEEEEEcCh
Confidence 58899999999999999999999999999999999999999999999999999999864 246799999999
Q ss_pred hhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhh----cccccCCccEEEEcccch
Q 038133 337 RELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER----RYAVLNQCNYVVLDEADR 412 (671)
Q Consensus 337 r~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~----~~~~l~~~~~vViDEah~ 412 (671)
++||.|+...+.++. ..++++..+.|+.+.. +...+..+++|||+||++|...+.. ....++++++|||||||.
T Consensus 91 raLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 91 KALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred HHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 999999999999987 4578888888877754 4456677899999999998753322 123488999999999999
Q ss_pred hhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEE
Q 038133 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQH 492 (671)
Q Consensus 413 ~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~ 492 (671)
|.+ .|+..+..++..+.... .......|++++|||++...+ ++..++..|..+ +.............
T Consensus 169 ~~g-~fg~~~~~il~rL~ri~----------~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~~ 235 (742)
T TIGR03817 169 YRG-VFGSHVALVLRRLRRLC----------ARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTVA 235 (742)
T ss_pred ccC-ccHHHHHHHHHHHHHHH----------HhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEEE
Confidence 976 48877777766553210 000114799999999998765 677788887654 33322222111111
Q ss_pred EEEec----------------cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc--------CCeEEEecCCC
Q 038133 493 VVMMK----------------ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL--------GYRVTTLHGGK 548 (671)
Q Consensus 493 ~~~~~----------------~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~--------~~~v~~lhg~~ 548 (671)
+.... ...+...+..++.. +.++|||||+++.++.++..|... +..+..+||++
T Consensus 236 ~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~ 313 (742)
T TIGR03817 236 LWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGY 313 (742)
T ss_pred EecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCC
Confidence 11110 11344455555553 679999999999999999998764 56788999999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCC--CchHH
Q 038133 549 SQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH--DTDVF 626 (671)
Q Consensus 549 ~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~--d~~~~ 626 (671)
++++|..+++.|++|++++||||+++++|||||++++||+|++|.++.+|+||+||+||.|+.|.++++.+.+ |..++
T Consensus 314 ~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 314 LPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLV 393 (742)
T ss_pred CHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998744 33444
Q ss_pred HHHHHHHHhc
Q 038133 627 YDLKQMLIQS 636 (671)
Q Consensus 627 ~~l~~~l~~~ 636 (671)
..+..++...
T Consensus 394 ~~~~~~~~~~ 403 (742)
T TIGR03817 394 HHPEALFDRP 403 (742)
T ss_pred hCHHHHhcCC
Confidence 4445555443
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.6e-51 Score=431.70 Aligned_cols=354 Identities=31% Similarity=0.471 Sum_probs=325.9
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCccc
Q 038133 244 SKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEEN 323 (671)
Q Consensus 244 ~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~ 323 (671)
.-.|.-...|+++-|..+++..|+..+|..||++|..|||.++.+-|+|+.|..|+|||++|.+.++..+. .
T Consensus 18 DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~--------~ 89 (980)
T KOG4284|consen 18 DVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD--------S 89 (980)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC--------c
Confidence 34566677899999999999999999999999999999999999999999999999999999988877663 2
Q ss_pred ccCCCeEEEEecchhhHHHHHHHHHHHHhh-cCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCc
Q 038133 324 EAEGPYAVVMAPTRELAQQIEEETVKFAHY-LGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQC 402 (671)
Q Consensus 324 ~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~-~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~ 402 (671)
....++++||+|||+||.||.+.+.+++.. .|++|.+.+||+........+ +.|+|+|||||++..+++.+.++.+.+
T Consensus 90 ~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 90 RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcCCCccce
Confidence 347899999999999999999999999874 489999999999987776655 468999999999999999999999999
Q ss_pred cEEEEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECC
Q 038133 403 NYVVLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT 481 (671)
Q Consensus 403 ~~vViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~ 481 (671)
.++|+||||.+.+ ..|...+..|+..||. .+|++.||||-|..+.+.+.+||++|..|....
T Consensus 169 rlfVLDEADkL~~t~sfq~~In~ii~slP~-----------------~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~ 231 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTESFQDDINIIINSLPQ-----------------IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNA 231 (980)
T ss_pred eEEEeccHHhhhchhhHHHHHHHHHHhcch-----------------hheeeEEeccCchhHHHHHHHHhcccceeeccc
Confidence 9999999999998 6699999999999998 699999999999999999999999999999998
Q ss_pred CCccccceeEEEEEeccc--------hhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHH
Q 038133 482 AGKATELISQHVVMMKES--------EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQR 553 (671)
Q Consensus 482 ~~~~~~~i~~~~~~~~~~--------~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R 553 (671)
.....-.+.|++...... .|+..|..+++..+-.+.||||+....|+.++.+|...|+.|.++.|.|+|.+|
T Consensus 232 ~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~R 311 (980)
T KOG4284|consen 232 DDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDR 311 (980)
T ss_pred CCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHH
Confidence 888888888888766433 378888889988888899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 554 EISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 554 ~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
..+++.+++-.++|||+||+-+||||-++|++|||.|.|.+.++|.|||||+||.|..|.+++|+.....
T Consensus 312 l~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 312 LLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999987654
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-49 Score=407.54 Aligned_cols=369 Identities=30% Similarity=0.435 Sum_probs=303.0
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHh---------CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 260 PELLRAVERVGYKNPSPIQMAAIPLGL---------QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 260 ~~i~~~i~~~g~~~p~~~Q~~ai~~il---------~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
..+..++..++.....|+|.+++|.++ ..+|+.+.||||||||++|.+|+++.+.+.| -.--++
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-------v~~LRa 218 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-------VKRLRA 218 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-------ccceEE
Confidence 345566889999999999999999996 2589999999999999999999999997643 244789
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcC-----CeEEEEcchHHHHHHhh-cccccCCccE
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG-----CEVVIATPGRLIDCLER-RYAVLNQCNY 404 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~-----~~IiI~Tp~~L~~~l~~-~~~~l~~~~~ 404 (671)
|||+||++|+.|++.+|.+++...|+.|+.++|..+.+.....|... .+|+|+|||+|.+.+.+ ..+.|.++.|
T Consensus 219 vVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lrf 298 (620)
T KOG0350|consen 219 VVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRF 298 (620)
T ss_pred EEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceE
Confidence 99999999999999999999999999999999999988887777653 48999999999999984 4567999999
Q ss_pred EEEcccchhhccCChHHHHHHHHhCCCCCCCCCCch--------------hhhhh---hhhcceEEEEeccCCHHHHHHH
Q 038133 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED--------------EELDE---KRIYRTTYMFSATMPPAVERLA 467 (671)
Q Consensus 405 vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~--------------~~~~~---~~~~~q~i~~SAT~~~~~~~l~ 467 (671)
+||||||||++..|...+-.++..+.......+.+. ..... .....+-+.||||+......+.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 999999999998888777766666554321111110 01111 1223446889999988888888
Q ss_pred HHhcCCCeEEEECC----CCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHH-H---cCC
Q 038133 468 RKYLRNPVVVTIGT----AGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLD-K---LGY 539 (671)
Q Consensus 468 ~~~l~~p~~i~i~~----~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~-~---~~~ 539 (671)
..-+..|....+.. .......+.+........-+...+..++......++|+|+++...+..++..|. . .+.
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 77788885444332 223334444444555555678888899988888999999999999999999987 2 256
Q ss_pred eEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEec
Q 038133 540 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619 (671)
Q Consensus 540 ~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~ 619 (671)
.+..+.|+++...|...++.|..|+++||||+|+++||||+.+++.|||||+|.+...|+||+||++|+|+.|.||+++.
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeec
Confidence 67779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHh
Q 038133 620 FHDTDVFYDLKQMLIQ 635 (671)
Q Consensus 620 ~~d~~~~~~l~~~l~~ 635 (671)
.++...|.++..-...
T Consensus 539 ~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 539 KHEKRLFSKLLKKTNL 554 (620)
T ss_pred cccchHHHHHHHHhcc
Confidence 9998888777666554
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.3e-47 Score=437.60 Aligned_cols=336 Identities=23% Similarity=0.329 Sum_probs=259.5
Q ss_pred CcccC--CCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCC
Q 038133 252 NWAEG--KLTPELLRAVE-RVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP 328 (671)
Q Consensus 252 ~f~e~--~l~~~i~~~i~-~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~ 328 (671)
.|... ..+..+...+. -+||..++|+|.++|+.++.|+|+|+++|||+|||++|++|++.. ++
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------~G 501 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------PG 501 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------------CC
Confidence 47653 44445555554 469999999999999999999999999999999999999999752 45
Q ss_pred eEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHh------cCCeEEEEcchHHHH--HHhhccc---
Q 038133 329 YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIR------QGCEVVIATPGRLID--CLERRYA--- 397 (671)
Q Consensus 329 ~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~------~~~~IiI~Tp~~L~~--~l~~~~~--- 397 (671)
.+|||+|+++|++++...+.. .++.+..+.++....++...+. ..++|||+||++|.. .+.+...
T Consensus 502 iTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~ 577 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLN 577 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhh
Confidence 799999999999854333332 5899999999998777655443 358999999999852 2222211
Q ss_pred ccCCccEEEEcccchhhccC--ChHHHHHH--HHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCC
Q 038133 398 VLNQCNYVVLDEADRMIDMG--FEPQVVGV--LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRN 473 (671)
Q Consensus 398 ~l~~~~~vViDEah~~~~~~--f~~~i~~i--l~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~ 473 (671)
....+.+|||||||++.+|| |++.+..+ +..... ..++++||||+++.+...+...+.-
T Consensus 578 ~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp-----------------~vPilALTATAT~~V~eDI~~~L~l 640 (1195)
T PLN03137 578 SRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-----------------NIPVLALTATATASVKEDVVQALGL 640 (1195)
T ss_pred hccccceeccCcchhhhhcccchHHHHHHHHHHHHhCC-----------------CCCeEEEEecCCHHHHHHHHHHcCC
Confidence 23458999999999999998 77777653 222211 3678999999999988766665543
Q ss_pred CeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHH
Q 038133 474 PVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQ 552 (671)
Q Consensus 474 p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~ 552 (671)
...+.+..... ..++...+.. ........+..++... .+...||||++++.|+.++..|...|+.+..+||+|++.+
T Consensus 641 ~~~~vfr~Sf~-RpNL~y~Vv~-k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~ee 718 (1195)
T PLN03137 641 VNCVVFRQSFN-RPNLWYSVVP-KTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQ 718 (1195)
T ss_pred CCcEEeecccC-ccceEEEEec-cchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHH
Confidence 22222211111 1222222221 1122234566666543 3567999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCch
Q 038133 553 REISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624 (671)
Q Consensus 553 R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~ 624 (671)
|..+++.|..|.++|||||+++++|||+|+|++||||++|.|++.|+|++|||||.|..|.|++|+...|..
T Consensus 719 R~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 719 RAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred HHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876543
No 38
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.6e-46 Score=435.76 Aligned_cols=354 Identities=19% Similarity=0.217 Sum_probs=275.5
Q ss_pred hHHHHHHHHHHHHhhhhccccccccCCCChhhhhccCHHHHHHHHhhcCcccccCCCCCCCCCcccCCCCHHHHHHH-HH
Q 038133 190 PEEAAALKLKEEAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAV-ER 268 (671)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i-~~ 268 (671)
.+++++++.++.|.++++.|++|..... ... ..+..+...+ ..
T Consensus 404 ~k~~~~~~~~~~a~~l~~l~a~r~~~~~---~~~---------------------------------~~~~~~~~~~~~~ 447 (926)
T TIGR00580 404 TKAKVKKSVREIAAKLIELYAKRKAIKG---HAF---------------------------------PPDLEWQQEFEDS 447 (926)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCC---------------------------------CCCHHHHHHHHHh
Confidence 3455667788888888888887755421 111 1222333333 44
Q ss_pred cCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQ------RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~------rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
++| .|||+|.+||+.++++ .|++++||||||||.+|++|++..+. .|++++|||||++||.|
T Consensus 448 ~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-----------~g~qvlvLvPT~~LA~Q 515 (926)
T TIGR00580 448 FPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-----------DGKQVAVLVPTTLLAQQ 515 (926)
T ss_pred CCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-----------hCCeEEEEeCcHHHHHH
Confidence 578 5999999999999974 79999999999999999999998875 47899999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEEECCCchHHHHH---HHhc-CCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCC
Q 038133 343 IEEETVKFAHYLGIKVVSIVGGQSIEEQGF---RIRQ-GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGF 418 (671)
Q Consensus 343 i~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f 418 (671)
+++.+.+++..+++++..++|+.+..+... .+.. .++||||||..+ .....+.++++|||||+|++
T Consensus 516 ~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf----- 585 (926)
T TIGR00580 516 HFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF----- 585 (926)
T ss_pred HHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc-----
Confidence 999999999999999999999887554433 3334 489999999543 23445889999999999995
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEecc
Q 038133 419 EPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKE 498 (671)
Q Consensus 419 ~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~ 498 (671)
.......+..++. ..++++||||++|....++...+.++..+....... ..+...+.....
T Consensus 586 gv~~~~~L~~~~~-----------------~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~~ 646 (926)
T TIGR00580 586 GVKQKEKLKELRT-----------------SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYDP 646 (926)
T ss_pred chhHHHHHHhcCC-----------------CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecCH
Confidence 2233444555443 478999999999988777777777887766544332 223333332222
Q ss_pred chhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc--CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccc
Q 038133 499 SEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL--GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGR 576 (671)
Q Consensus 499 ~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~ 576 (671)
..-...+...+. .+++++||||++++++.+++.|.+. ++++..+||+|++.+|+.++..|++|+++|||||+++++
T Consensus 647 ~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~ 724 (926)
T TIGR00580 647 ELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIET 724 (926)
T ss_pred HHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 111222222222 3789999999999999999999986 789999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEcCCCC-CHHHHHHHhcccCCCCCccEEEEEecCCC
Q 038133 577 GIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATTFLTFHD 622 (671)
Q Consensus 577 GiDIp~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~ai~~~~~~d 622 (671)
|||+|++++||+++.|. +..+|.||+||+||.|+.|.||+|+++.+
T Consensus 725 GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 725 GIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred ccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 99999999999999875 78899999999999999999999997654
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-46 Score=417.06 Aligned_cols=322 Identities=25% Similarity=0.369 Sum_probs=255.1
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 268 RVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 268 ~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
.+||..|+|+|.++|+.+++|+|+++++|||||||++|++|++. .++.+|||+||++|+.|+...+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~--------------~~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC--------------SDGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH--------------cCCcEEEEecHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999864 2457999999999999887776
Q ss_pred HHHHhhcCcEEEEEECCCchHHHHHH---Hh-cCCeEEEEcchHHHHHH--hhcccccCCccEEEEcccchhhccC--Ch
Q 038133 348 VKFAHYLGIKVVSIVGGQSIEEQGFR---IR-QGCEVVIATPGRLIDCL--ERRYAVLNQCNYVVLDEADRMIDMG--FE 419 (671)
Q Consensus 348 ~k~~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~~IiI~Tp~~L~~~l--~~~~~~l~~~~~vViDEah~~~~~~--f~ 419 (671)
.. +|+.+..+.++....+.... +. ...+|+++||+++.... ........++++|||||||++.+|| |.
T Consensus 72 ~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr 147 (470)
T TIGR00614 72 KA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFR 147 (470)
T ss_pred HH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccH
Confidence 54 57888888888776543322 22 24899999999975322 1111146789999999999999987 66
Q ss_pred HHHHHH---HHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhc--CCCeEEEECCCCccccceeEEEE
Q 038133 420 PQVVGV---LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYL--RNPVVVTIGTAGKATELISQHVV 494 (671)
Q Consensus 420 ~~i~~i---l~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l--~~p~~i~i~~~~~~~~~i~~~~~ 494 (671)
+.+..+ ...++ ..+++++|||+++.+.......+ .+|.++...... .++...+.
T Consensus 148 ~~~~~l~~l~~~~~------------------~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r---~nl~~~v~ 206 (470)
T TIGR00614 148 PDYKALGSLKQKFP------------------NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR---PNLYYEVR 206 (470)
T ss_pred HHHHHHHHHHHHcC------------------CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC---CCcEEEEE
Confidence 665443 33333 36799999999998876665554 345444332221 12221211
Q ss_pred EeccchhHHHHHHHHH-HhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc
Q 038133 495 MMKESEKFSRLQRLLD-ELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573 (671)
Q Consensus 495 ~~~~~~k~~~L~~ll~-~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~ 573 (671)
.........+..++. ...+..+||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|.+|.++|||||++
T Consensus 207 -~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~ 285 (470)
T TIGR00614 207 -RKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA 285 (470)
T ss_pred -eCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech
Confidence 122244556666666 334566799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHH
Q 038133 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629 (671)
Q Consensus 574 ~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l 629 (671)
+++|||+|+|++||+|++|.|++.|+||+||+||.|..|.|++|+++.|...+..+
T Consensus 286 ~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~ 341 (470)
T TIGR00614 286 FGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRL 341 (470)
T ss_pred hhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876655444
No 40
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.7e-45 Score=437.66 Aligned_cols=354 Identities=21% Similarity=0.238 Sum_probs=276.7
Q ss_pred hHHHHHHHHHHHHhhhhccccccccCCCChhhhhccCHHHHHHHHhhcCcccccCCCCCCCCCcccCCCCHHHHHHHHHc
Q 038133 190 PEEAAALKLKEEAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERV 269 (671)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~~ 269 (671)
.++++++..++.|.++++.|+.|.... ......+...+..|.. .+
T Consensus 553 ~k~~~~~~~~~~a~~l~~~~a~r~~~~---~~~~~~~~~~~~~~~~--------------------------------~~ 597 (1147)
T PRK10689 553 ARQKAAEKVRDVAAELLDIYAQRAAKE---GFAFKHDREQYQLFCD--------------------------------SF 597 (1147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCCCCHHHHHHHHH--------------------------------hC
Confidence 345667778889999999888876552 2222233333344444 45
Q ss_pred CCCCCcHHHHHHHHHHhCC------CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 270 GYKNPSPIQMAAIPLGLQQ------RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 270 g~~~p~~~Q~~ai~~il~~------rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
+| .||++|.+||+.++.+ +|+++||+||||||.+|+.+++..+. .|++++|||||++||.|+
T Consensus 598 ~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----------~g~qvlvLvPT~eLA~Q~ 665 (1147)
T PRK10689 598 PF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----------NHKQVAVLVPTTLLAQQH 665 (1147)
T ss_pred CC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----------cCCeEEEEeCcHHHHHHH
Confidence 56 7999999999999986 89999999999999999998877663 588999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEEECCCchHHHHHHHh----cCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCCh
Q 038133 344 EEETVKFAHYLGIKVVSIVGGQSIEEQGFRIR----QGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFE 419 (671)
Q Consensus 344 ~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~----~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~ 419 (671)
+..+.+++..+++++..++|+.+..++...+. .+++||||||+.|. ....+.++++|||||+|+| |+.
T Consensus 666 ~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf---G~~ 737 (1147)
T PRK10689 666 YDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF---GVR 737 (1147)
T ss_pred HHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc---chh
Confidence 99999988888999999999988777655433 35899999997552 2345789999999999997 332
Q ss_pred HHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccc
Q 038133 420 PQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499 (671)
Q Consensus 420 ~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~ 499 (671)
....+..++. ..|+++||||++|.+..++...+.++..+....... ..+.+.+......
T Consensus 738 --~~e~lk~l~~-----------------~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~~ 796 (1147)
T PRK10689 738 --HKERIKAMRA-----------------DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDSL 796 (1147)
T ss_pred --HHHHHHhcCC-----------------CCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCcH
Confidence 2344444543 578999999999999888888899998776654432 2233333322221
Q ss_pred hhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc--CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccc
Q 038133 500 EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL--GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577 (671)
Q Consensus 500 ~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~G 577 (671)
.....+...+. .+++++||||+++.++.+++.|.+. +.++.++||+|++.+|+.++..|++|+++|||||+++++|
T Consensus 797 ~~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierG 874 (1147)
T PRK10689 797 VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 (1147)
T ss_pred HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcc
Confidence 11222222222 3678999999999999999999987 7899999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCCC-CCHHHHHHHhcccCCCCCccEEEEEecCC
Q 038133 578 IDIPDVAHVINYDMP-GNIEMYTHRIGRTGRAGKTGVATTFLTFH 621 (671)
Q Consensus 578 iDIp~v~~VI~~d~p-~s~~~y~QriGR~gR~G~~g~ai~~~~~~ 621 (671)
||+|++++||..+.. .+..+|+||+||+||.|+.|.||+++.+.
T Consensus 875 IDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred cccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 999999999965443 35778999999999999999999888654
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.7e-45 Score=416.67 Aligned_cols=328 Identities=23% Similarity=0.349 Sum_probs=259.3
Q ss_pred CHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecch
Q 038133 259 TPELLRAVER-VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTR 337 (671)
Q Consensus 259 ~~~i~~~i~~-~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr 337 (671)
.....+.+++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..+||++|++
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVisPl~ 75 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVVSPLI 75 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEEecHH
Confidence 3334445544 69999999999999999999999999999999999999999742 34699999999
Q ss_pred hhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHH---Hhc-CCeEEEEcchHHHHHHhhcccccCCccEEEEcccchh
Q 038133 338 ELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFR---IRQ-GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRM 413 (671)
Q Consensus 338 ~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~ 413 (671)
+|+.|+...+.. .|+.+..+.++.+..+.... +.. ..+|+++||++|........+...++++|||||||++
T Consensus 76 sL~~dqv~~l~~----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 76 SLMKDQVDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 999998777665 57888888887776654322 222 4789999999986322222233567899999999999
Q ss_pred hccC--ChHHHHHH---HHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHh--cCCCeEEEECCCCccc
Q 038133 414 IDMG--FEPQVVGV---LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKY--LRNPVVVTIGTAGKAT 486 (671)
Q Consensus 414 ~~~~--f~~~i~~i---l~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~--l~~p~~i~i~~~~~~~ 486 (671)
.+|| |.+.+..+ ...++ ..+++++|||+++.+....... +.+|.+.. .....
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p------------------~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~r-- 210 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFP------------------TLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDR-- 210 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCC------------------CCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCCC--
Confidence 9987 66665443 33332 3678999999998876544443 34554333 22211
Q ss_pred cceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCc
Q 038133 487 ELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN 566 (671)
Q Consensus 487 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~ 566 (671)
.++ .+.......+...+..++....+.++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|..|.++
T Consensus 211 ~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~ 288 (607)
T PRK11057 211 PNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ 288 (607)
T ss_pred Ccc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC
Confidence 112 122223334556677777776788999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHH
Q 038133 567 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFY 627 (671)
Q Consensus 567 VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~ 627 (671)
|||||+++++|||+|+|++||||++|.|++.|+|++||+||.|.+|.|++|+++.|...+.
T Consensus 289 VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~ 349 (607)
T PRK11057 289 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349 (607)
T ss_pred EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988765443
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-45 Score=427.37 Aligned_cols=376 Identities=24% Similarity=0.313 Sum_probs=285.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPL-GLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 252 ~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~-il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
.|++++||+.+++++...||..|+|+|.+|++. +++|+|++++||||||||++|.+|++..+. .+.++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-----------~~~ka 70 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-----------RGGKA 70 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-----------cCCcE
Confidence 467889999999999999999999999999998 678999999999999999999999999874 47789
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEccc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEA 410 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEa 410 (671)
||++||++||.|++..+.++.. +|+++..++|+...... ....++|+|+||+++..++.+....+.++++||+||+
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~ 146 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEV 146 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECc
Confidence 9999999999999999998654 58999999998764432 2346899999999998887765566889999999999
Q ss_pred chhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCC--------CeEEEECCC
Q 038133 411 DRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRN--------PVVVTIGTA 482 (671)
Q Consensus 411 h~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~--------p~~i~i~~~ 482 (671)
|.+.+.++++.+..++..+..... ..|++++|||++.. ..++. ++.. |..+..+..
T Consensus 147 H~l~d~~rg~~le~il~rl~~~~~--------------~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~ 210 (737)
T PRK02362 147 HLIDSANRGPTLEVTLAKLRRLNP--------------DLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVF 210 (737)
T ss_pred cccCCCcchHHHHHHHHHHHhcCC--------------CCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEe
Confidence 999998999888888777653211 47899999999753 33433 3321 111110000
Q ss_pred CccccceeEEEEEecc---chhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc----------------------
Q 038133 483 GKATELISQHVVMMKE---SEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL---------------------- 537 (671)
Q Consensus 483 ~~~~~~i~~~~~~~~~---~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~---------------------- 537 (671)
.............+.. ......+.+.+. .++++||||++++.|+.++..|...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (737)
T PRK02362 211 YGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIRE 288 (737)
T ss_pred cCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 0000000000000111 122233333333 4789999999999999998887543
Q ss_pred --------------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE----cC-----CCCC
Q 038133 538 --------------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YD-----MPGN 594 (671)
Q Consensus 538 --------------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~----~d-----~p~s 594 (671)
..+++.+||+|++.+|..+++.|++|.++|||||+++++|||+|.+++||+ || .|.+
T Consensus 289 ~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s 368 (737)
T PRK02362 289 VSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIP 368 (737)
T ss_pred ccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCC
Confidence 136889999999999999999999999999999999999999999999997 66 5889
Q ss_pred HHHHHHHhcccCCCCCc--cEEEEEecCCCchHHHHHHHHHHhc----CCCC--ChhHHhchhccCCCCCCCCCC
Q 038133 595 IEMYTHRIGRTGRAGKT--GVATTFLTFHDTDVFYDLKQMLIQS----NSPV--PPELAKHEASKFKPGTIPDRP 661 (671)
Q Consensus 595 ~~~y~QriGR~gR~G~~--g~ai~~~~~~d~~~~~~l~~~l~~~----~~~v--p~~L~~~~~~~~~~g~i~~~~ 661 (671)
+.+|.||+|||||.|.+ |.|++++...+. ...-+..++... .+.+ +..|.+|..+.+..|++.+.+
T Consensus 369 ~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~-~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~ 442 (737)
T PRK02362 369 VLEYHQMAGRAGRPGLDPYGEAVLLAKSYDE-LDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRD 442 (737)
T ss_pred HHHHHHHhhcCCCCCCCCCceEEEEecCchh-HHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHH
Confidence 99999999999999965 999998865432 222223444322 3445 457999999999999887764
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.6e-44 Score=412.26 Aligned_cols=316 Identities=26% Similarity=0.358 Sum_probs=258.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+||..++|+|.++|+.++.|+|+++++|||+|||++|++|++. .+..++|++|+++|+.|....+.
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~--------------~~g~~lVisPl~sL~~dq~~~l~ 74 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL--------------LKGLTVVISPLISLMKDQVDQLR 74 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH--------------cCCcEEEEcCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999874 24568999999999998877766
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHH----hcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC--ChHHH
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRI----RQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG--FEPQV 422 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l----~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~--f~~~i 422 (671)
. +|+.+..+.++.+..+....+ ...++|+++||++|........+...++++|||||||++.+|| |++.+
T Consensus 75 ~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 75 A----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred H----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 5 578888888888766543322 2358999999999965444444556789999999999999877 77766
Q ss_pred HHHHH---hCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcC--CCeEEEECCCCccccceeEEEEEec
Q 038133 423 VGVLD---AMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR--NPVVVTIGTAGKATELISQHVVMMK 497 (671)
Q Consensus 423 ~~il~---~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~--~p~~i~i~~~~~~~~~i~~~~~~~~ 497 (671)
..+.. .++. .+++++|||+++.+.......+. ++..+. .... ..++ .+....
T Consensus 151 ~~l~~l~~~~~~------------------~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~--r~nl--~~~v~~ 207 (591)
T TIGR01389 151 QRLGSLAERFPQ------------------VPRIALTATADAETRQDIRELLRLADANEFI-TSFD--RPNL--RFSVVK 207 (591)
T ss_pred HHHHHHHHhCCC------------------CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCC--CCCc--EEEEEe
Confidence 55433 3332 34899999999998877766664 333322 2111 1122 222233
Q ss_pred cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccc
Q 038133 498 ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577 (671)
Q Consensus 498 ~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~G 577 (671)
...+...+.+++....+.++||||++++.|+.+++.|...|+.+..+||+|+.++|..+++.|.+|.++|||||+++++|
T Consensus 208 ~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~G 287 (591)
T TIGR01389 208 KNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMG 287 (591)
T ss_pred CCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhcc
Confidence 45567778888877667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchH
Q 038133 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDV 625 (671)
Q Consensus 578 iDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~ 625 (671)
||+|+|++||+|++|.|++.|.|++||+||.|..|.|++|+++.|...
T Consensus 288 ID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~ 335 (591)
T TIGR01389 288 IDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIAL 335 (591)
T ss_pred CcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHH
Confidence 999999999999999999999999999999999999999988776543
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.2e-44 Score=416.70 Aligned_cols=373 Identities=22% Similarity=0.266 Sum_probs=284.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPL-GLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 252 ~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~-il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
.|+++++++.+.+.+.+.||..|+|+|.++++. ++.|+|+++++|||||||++|.+|++..+.. .+.++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----------~~~~~ 71 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----------EGGKA 71 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----------cCCeE
Confidence 467789999999999999999999999999986 7899999999999999999999999988753 46799
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEccc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEA 410 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEa 410 (671)
|||+|+++||.|++..+..+. .+|+++..++|+...... ....++|+|+||+++..++......++++++||+||+
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~ 147 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEI 147 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCc
Confidence 999999999999999998864 478999999998765432 2356899999999998887766666899999999999
Q ss_pred chhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccc-cce
Q 038133 411 DRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKAT-ELI 489 (671)
Q Consensus 411 h~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~-~~i 489 (671)
|.+.+.++...+..++..+.. ..|++++|||++.. ..++. ++....+.....+.... ...
T Consensus 148 H~l~~~~rg~~le~il~~l~~-----------------~~qiI~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~~~ 208 (720)
T PRK00254 148 HLIGSYDRGATLEMILTHMLG-----------------RAQILGLSATVGNA-EELAE-WLNAELVVSDWRPVKLRKGVF 208 (720)
T ss_pred CccCCccchHHHHHHHHhcCc-----------------CCcEEEEEccCCCH-HHHHH-HhCCccccCCCCCCcceeeEe
Confidence 999999999999999888754 47899999999763 45554 45443221111110000 001
Q ss_pred eEEEEEeccc-------hhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHH--------------------------
Q 038133 490 SQHVVMMKES-------EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK-------------------------- 536 (671)
Q Consensus 490 ~~~~~~~~~~-------~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~-------------------------- 536 (671)
.+........ .....+.+.+. .++++||||++++.|+.++..|..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (720)
T PRK00254 209 YQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPT 286 (720)
T ss_pred cCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Confidence 1111111111 11122334443 368999999999999888766632
Q ss_pred -------cCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE-------cCCCC-CHHHHHHH
Q 038133 537 -------LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN-------YDMPG-NIEMYTHR 601 (671)
Q Consensus 537 -------~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~-------~d~p~-s~~~y~Qr 601 (671)
...++..+||+|++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. ++.+|.||
T Consensus 287 ~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm 366 (720)
T PRK00254 287 NEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQM 366 (720)
T ss_pred cHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHh
Confidence 1246899999999999999999999999999999999999999999999993 45443 67899999
Q ss_pred hcccCCCC--CccEEEEEecCCCchHHHHHHHHHHh----cCC--CCChhHHhchhccCCCCCCCCCC
Q 038133 602 IGRTGRAG--KTGVATTFLTFHDTDVFYDLKQMLIQ----SNS--PVPPELAKHEASKFKPGTIPDRP 661 (671)
Q Consensus 602 iGR~gR~G--~~g~ai~~~~~~d~~~~~~l~~~l~~----~~~--~vp~~L~~~~~~~~~~g~i~~~~ 661 (671)
+|||||.| ..|.|+++++..+...+ +..++.. ..+ +.++.|..|..+.+..|.+.+.+
T Consensus 367 ~GRAGR~~~d~~G~~ii~~~~~~~~~~--~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~ 432 (720)
T PRK00254 367 MGRAGRPKYDEVGEAIIVATTEEPSKL--MERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFK 432 (720)
T ss_pred hhccCCCCcCCCceEEEEecCcchHHH--HHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHH
Confidence 99999976 56999999887553222 2333321 123 33467888888888888877653
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.5e-43 Score=415.09 Aligned_cols=344 Identities=23% Similarity=0.270 Sum_probs=254.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecc
Q 038133 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPT 336 (671)
Q Consensus 257 ~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Pt 336 (671)
.+++.+.+.+.. +|..|+|+|.+|||.+++|+|++++||||||||++|++|++..+...+.. .....+.++|||+||
T Consensus 17 ~l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~--~~~~~~~~~LyIsPt 93 (876)
T PRK13767 17 LLRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE--GELEDKVYCLYVSPL 93 (876)
T ss_pred hcCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc--cCCCCCeEEEEEcCH
Confidence 366777777665 78999999999999999999999999999999999999999988643211 011357889999999
Q ss_pred hhhHHHHHHHHHH-------HHh----hc-CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc--ccCCc
Q 038133 337 RELAQQIEEETVK-------FAH----YL-GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA--VLNQC 402 (671)
Q Consensus 337 r~La~Qi~~~~~k-------~~~----~~-~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~--~l~~~ 402 (671)
++||.|++..+.. ++. .+ ++++...+|+.+..+....+...++|+||||++|..++..... .+.++
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 9999999876553 221 22 6788899999988877777777899999999999877755432 47899
Q ss_pred cEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcC-------CCe
Q 038133 403 NYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-------NPV 475 (671)
Q Consensus 403 ~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~-------~p~ 475 (671)
++|||||+|.+.+..+...+..++..+.... ....|++++|||+++. +.++..... .+.
T Consensus 174 ~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-------------~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~ 239 (876)
T PRK13767 174 KWVIVDEIHSLAENKRGVHLSLSLERLEELA-------------GGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDC 239 (876)
T ss_pred CEEEEechhhhccCccHHHHHHHHHHHHHhc-------------CCCCeEEEEecccCCH-HHHHHHhcCccccCCCCce
Confidence 9999999999998877777666655543211 0147899999999863 333332221 122
Q ss_pred EEEECCCCccccceeEE-----EEEeccch----hHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc------CCe
Q 038133 476 VVTIGTAGKATELISQH-----VVMMKESE----KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL------GYR 540 (671)
Q Consensus 476 ~i~i~~~~~~~~~i~~~-----~~~~~~~~----k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~------~~~ 540 (671)
.+. .........+... +....... ....|..++. .++++|||||++..|+.++..|... +..
T Consensus 240 ~iv-~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~ 316 (876)
T PRK13767 240 EIV-DARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDN 316 (876)
T ss_pred EEE-ccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccc
Confidence 221 1111100000000 00011111 1223333333 2678999999999999999999873 467
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCC-CCccEEEEEec
Q 038133 541 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA-GKTGVATTFLT 619 (671)
Q Consensus 541 v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~-G~~g~ai~~~~ 619 (671)
+..+||++++++|..+++.|++|.++|||||+++++|||+|++++||+++.|.++..|+||+||+||. |..+.++++..
T Consensus 317 i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 317 IGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred eeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 44344444444
Q ss_pred C
Q 038133 620 F 620 (671)
Q Consensus 620 ~ 620 (671)
.
T Consensus 397 ~ 397 (876)
T PRK13767 397 D 397 (876)
T ss_pred C
Confidence 3
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.2e-43 Score=397.09 Aligned_cols=316 Identities=20% Similarity=0.241 Sum_probs=248.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCC-cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEE-EecchhhHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQR-DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVV-MAPTRELAQQIEEE 346 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~r-d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLi-l~Ptr~La~Qi~~~ 346 (671)
.||. |+|||.++||.++.|+ ++++++|||||||.+|.++++... .....++.|| ++|||+||.|+++.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~---------~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE---------IGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc---------ccccccceEEEeCchHHHHHHHHHH
Confidence 4887 9999999999999998 577789999999997765555321 1124566665 66999999999999
Q ss_pred HHHHHhhc-----------------------CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc------
Q 038133 347 TVKFAHYL-----------------------GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA------ 397 (671)
Q Consensus 347 ~~k~~~~~-----------------------~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~------ 397 (671)
+.++.+.+ ++++..++||.+...+...+..+++|||+|+ |++.++.+
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~ 157 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGC 157 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccccc
Confidence 99999866 4889999999999999999989999999995 45555444
Q ss_pred ----------ccCCccEEEEcccchhhccCChHHHHHHHHhC--CCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHH
Q 038133 398 ----------VLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM--PSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVER 465 (671)
Q Consensus 398 ----------~l~~~~~vViDEah~~~~~~f~~~i~~il~~l--~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~ 465 (671)
.++++++||||||| ++++|...+..|+..+ +.. . ..+|+++||||++..+..
T Consensus 158 ~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~-~-------------rprQtLLFSAT~p~ei~~ 221 (844)
T TIGR02621 158 GFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD-F-------------LPLRVVELTATSRTDGPD 221 (844)
T ss_pred ccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc-c-------------ccceEEEEecCCCccHHH
Confidence 26889999999999 7899999999999975 221 0 136999999999998888
Q ss_pred HHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHH---HhCCCcEEEEecChhhHHHHHHHHHHcCCeEE
Q 038133 466 LARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLD---ELGDKTAIVFVNTKKNADMVAKNLDKLGYRVT 542 (671)
Q Consensus 466 l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~---~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~ 542 (671)
+...++.++..+.+.........+.+. .......|...+...+. ...++++|||||+++.|+.+++.|.+.++ .
T Consensus 222 l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~ 298 (844)
T TIGR02621 222 RTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--E 298 (844)
T ss_pred HHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--e
Confidence 888888787766655443333444443 23333334433333221 22467899999999999999999998876 8
Q ss_pred EecCCCCHHHHH-----HHHHHhhc----CC-------CcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccC
Q 038133 543 TLHGGKSQEQRE-----ISLEGFRT----KR-------YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTG 606 (671)
Q Consensus 543 ~lhg~~~~~~R~-----~~l~~F~~----g~-------~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~g 606 (671)
.+||.|++.+|. .+++.|++ |. ..|||||+++++||||+. ++||++..| ++.|+||+||+|
T Consensus 299 lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtg 375 (844)
T TIGR02621 299 LLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVN 375 (844)
T ss_pred EeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccC
Confidence 999999999999 78999987 44 679999999999999986 899998776 799999999999
Q ss_pred CCCCc-cEEEEEecC
Q 038133 607 RAGKT-GVATTFLTF 620 (671)
Q Consensus 607 R~G~~-g~ai~~~~~ 620 (671)
|.|+. +.++++++.
T Consensus 376 R~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 376 RFGELQACQIAVVHL 390 (844)
T ss_pred CCCCCCCceEEEEee
Confidence 99985 444666644
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.3e-42 Score=394.81 Aligned_cols=353 Identities=21% Similarity=0.265 Sum_probs=257.5
Q ss_pred HHHH-HHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEE
Q 038133 261 ELLR-AVERVGYKNPSPIQMAAIPLGLQQ------RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVM 333 (671)
Q Consensus 261 ~i~~-~i~~~g~~~p~~~Q~~ai~~il~~------rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil 333 (671)
.+.+ .+..++| .||++|.+||+.+..+ .+++++||||||||++|++|++..+. .|.+++||
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----------~g~q~lil 316 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----------AGYQAALM 316 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----------cCCeEEEE
Confidence 3444 4567788 6999999999999876 47999999999999999999998874 58899999
Q ss_pred ecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHH---HHHHhcC-CeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 334 APTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQ---GFRIRQG-CEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 334 ~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~---~~~l~~~-~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
+||++||.|+++.+.+++..+++++..++|+.+..+. ...+..| ++|+||||+.+.+. ..+.++++|||||
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-----v~~~~l~lvVIDE 391 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD-----VEFHNLGLVIIDE 391 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc-----chhcccceEEEec
Confidence 9999999999999999999999999999999985443 3344444 99999999988543 3478999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccce
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i 489 (671)
+|++.. .....+..... ..++++||||+.|....+.. ..+..+..+.........+
T Consensus 392 ~Hrfg~-----~qr~~l~~~~~-----------------~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i 447 (681)
T PRK10917 392 QHRFGV-----EQRLALREKGE-----------------NPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPI 447 (681)
T ss_pred hhhhhH-----HHHHHHHhcCC-----------------CCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCc
Confidence 999632 22223332211 36799999999887654443 3333333333222222223
Q ss_pred eEEEEEeccchhHHHHHHHHHH--hCCCcEEEEecChh--------hHHHHHHHHHHc--CCeEEEecCCCCHHHHHHHH
Q 038133 490 SQHVVMMKESEKFSRLQRLLDE--LGDKTAIVFVNTKK--------NADMVAKNLDKL--GYRVTTLHGGKSQEQREISL 557 (671)
Q Consensus 490 ~~~~~~~~~~~k~~~L~~ll~~--~~~~~iIVF~~~~~--------~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~l 557 (671)
...+.. . .....+.+.+.. ..+.+++|||+.++ .+..+++.|... ++.+..+||+|++.+|+.++
T Consensus 448 ~~~~~~--~-~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 524 (681)
T PRK10917 448 TTVVIP--D-SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVM 524 (681)
T ss_pred EEEEeC--c-ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHH
Confidence 333222 2 222333333322 24779999999654 456677777765 57899999999999999999
Q ss_pred HHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCC-CHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 558 EGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 558 ~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
+.|++|+.+|||||+++++|||+|++++||+++.|. +...|.|++||+||.|..|.|++++.....+....-...+...
T Consensus 525 ~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~ 604 (681)
T PRK10917 525 AAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRET 604 (681)
T ss_pred HHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHh
Confidence 999999999999999999999999999999999987 6889999999999999999999999644333333333334333
Q ss_pred CCCCChhHHhchhccCCCCCCCC
Q 038133 637 NSPVPPELAKHEASKFKPGTIPD 659 (671)
Q Consensus 637 ~~~vp~~L~~~~~~~~~~g~i~~ 659 (671)
..- -.++...-....+|.+--
T Consensus 605 ~dg--f~iae~dl~~rg~g~~~g 625 (681)
T PRK10917 605 NDG--FVIAEKDLELRGPGELLG 625 (681)
T ss_pred cch--HHHHHHhHhhCCCccccC
Confidence 211 123333334455665543
No 48
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-44 Score=342.42 Aligned_cols=333 Identities=33% Similarity=0.548 Sum_probs=290.2
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
..|.++-|.|+++++|-+.||..|+..|.++||...-|-|+++.|..|.|||++|++..|..+. +....-.+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie--------pv~g~vsv 113 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE--------PVDGQVSV 113 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC--------CCCCeEEE
Confidence 4577778999999999999999999999999999999999999999999999999999988773 22234568
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcC-cEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLG-IKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~-i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
|++|.||+||-||..+..+|.+.++ +++.+.+||.++......+.+-++|+|+|||+++.++.++.+.++++...|+||
T Consensus 114 lvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDE 193 (387)
T KOG0329|consen 114 LVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDE 193 (387)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhh
Confidence 9999999999999999999999885 799999999999988888888889999999999999999999999999999999
Q ss_pred cchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCc-ccc
Q 038133 410 ADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK-ATE 487 (671)
Q Consensus 410 ah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~-~~~ 487 (671)
||.|+. ......+..|+...|. ..|++|||||++..+...+++|+.+|..+.++.... ...
T Consensus 194 cdkmle~lDMrRDvQEifr~tp~-----------------~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLH 256 (387)
T KOG0329|consen 194 CDKMLEQLDMRRDVQEIFRMTPH-----------------EKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLH 256 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcc-----------------cceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhh
Confidence 999875 3566778888887776 689999999999999999999999999888876643 445
Q ss_pred ceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcE
Q 038133 488 LISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNV 567 (671)
Q Consensus 488 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~V 567 (671)
.+.|++....+..|-..|.++|....-.+++||+.+...+ . | +.+
T Consensus 257 GLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl------------------------------~-f---~kr- 301 (387)
T KOG0329|consen 257 GLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRL------------------------------S-F---QKR- 301 (387)
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhh------------------------------h-h---hhh-
Confidence 6777888888999999999999988888999999886650 0 3 223
Q ss_pred EEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCC-CchHHHHHHHHHHhcCCCCChh
Q 038133 568 LVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPE 643 (671)
Q Consensus 568 LVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~-d~~~~~~l~~~l~~~~~~vp~~ 643 (671)
||||+++++|+||..++.|||||+|.+..+|.||.||+||.|..|.+++|+..+ |..++..+..-..-..+.+|++
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 899999999999999999999999999999999999999999999999999865 5566666666555556777776
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.9e-41 Score=386.23 Aligned_cols=357 Identities=21% Similarity=0.250 Sum_probs=258.3
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEE
Q 038133 260 PELLRAVERVGYKNPSPIQMAAIPLGLQQ------RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVM 333 (671)
Q Consensus 260 ~~i~~~i~~~g~~~p~~~Q~~ai~~il~~------rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil 333 (671)
..+...+..++| .||++|..||+.++.+ .+++++||||||||++|++|++..+. .|.+++|+
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-----------~g~qvlil 290 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-----------AGYQVALM 290 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-----------cCCcEEEE
Confidence 344566788999 7999999999999865 25899999999999999999998874 58899999
Q ss_pred ecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHH---HHHHhc-CCeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 334 APTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQ---GFRIRQ-GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 334 ~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~---~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
+||++||.|+++.+.+++..+|+++..++|+.+..+. ...+.. .++|||+||+.+.+. ..+.++++|||||
T Consensus 291 aPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-----~~~~~l~lvVIDE 365 (630)
T TIGR00643 291 APTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-----VEFKRLALVIIDE 365 (630)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-----ccccccceEEEec
Confidence 9999999999999999999999999999999876553 333433 489999999988543 3478999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccce
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i 489 (671)
+|++... +...+....... ...++++||||+.|....+.. ..+.....+.........+
T Consensus 366 aH~fg~~----qr~~l~~~~~~~---------------~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i 424 (630)
T TIGR00643 366 QHRFGVE----QRKKLREKGQGG---------------FTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPI 424 (630)
T ss_pred hhhccHH----HHHHHHHhcccC---------------CCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCce
Confidence 9986321 112222222110 035799999998876544332 2222222222111111223
Q ss_pred eEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecCh--------hhHHHHHHHHHHc--CCeEEEecCCCCHHHHHHHH
Q 038133 490 SQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTK--------KNADMVAKNLDKL--GYRVTTLHGGKSQEQREISL 557 (671)
Q Consensus 490 ~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~--------~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~l 557 (671)
...+ +....+ ..+...+... .+.+++|||+.+ ..+..+++.|... ++.+..+||+|++.+|..++
T Consensus 425 ~~~~--~~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 501 (630)
T TIGR00643 425 TTVL--IKHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVM 501 (630)
T ss_pred EEEE--eCcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHH
Confidence 2222 222222 3344433322 377899999876 4466777777764 78899999999999999999
Q ss_pred HHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCC-CHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 558 EGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 558 ~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
+.|++|+.+|||||+++++|||+|++++||+++.|. +...|.|++||+||.|+.|.|++++.....+........+...
T Consensus 502 ~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~ 581 (630)
T TIGR00643 502 EEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADT 581 (630)
T ss_pred HHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999986 7889999999999999999999999443333333333444433
Q ss_pred CCCCChhHHhchhccCCCCCCCC
Q 038133 637 NSPVPPELAKHEASKFKPGTIPD 659 (671)
Q Consensus 637 ~~~vp~~L~~~~~~~~~~g~i~~ 659 (671)
...+ .++...-....+|.+-.
T Consensus 582 ~dgf--~iae~dl~~Rg~g~~~g 602 (630)
T TIGR00643 582 LDGF--VIAEEDLELRGPGDLLG 602 (630)
T ss_pred cccH--HHHHHHHhcCCCcccCC
Confidence 2222 23344444566777654
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=9.5e-42 Score=395.25 Aligned_cols=370 Identities=22% Similarity=0.247 Sum_probs=271.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEE
Q 038133 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAV 331 (671)
Q Consensus 252 ~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vL 331 (671)
.|.+++|++.+++.+...+|. ++|+|.++++.++++++++++||||||||+++.++++..+. .+.++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~-----------~~~k~v 69 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL-----------AGLKSI 69 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH-----------hCCcEE
Confidence 356779999999999999996 99999999999999999999999999999999999988774 367899
Q ss_pred EEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccc
Q 038133 332 VMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 411 (671)
Q Consensus 332 il~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah 411 (671)
|++|+++||.|+++.+.++. .+|+++...+|+...... ....++|+|+||+++..++.+....+.++++||+||+|
T Consensus 70 ~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH 145 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIH 145 (674)
T ss_pred EEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecch
Confidence 99999999999999999864 478899888887654322 23568999999999988877766678999999999999
Q ss_pred hhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeE
Q 038133 412 RMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQ 491 (671)
Q Consensus 412 ~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~ 491 (671)
.+.+.++++.+..++..+...+. ..|++++|||++.. ..++. ++..+.+.. ...... +..
T Consensus 146 ~l~d~~rg~~le~ll~~~~~~~~--------------~~riI~lSATl~n~-~~la~-wl~~~~~~~---~~r~vp-l~~ 205 (674)
T PRK01172 146 IIGDEDRGPTLETVLSSARYVNP--------------DARILALSATVSNA-NELAQ-WLNASLIKS---NFRPVP-LKL 205 (674)
T ss_pred hccCCCccHHHHHHHHHHHhcCc--------------CCcEEEEeCccCCH-HHHHH-HhCCCccCC---CCCCCC-eEE
Confidence 99998888888887766543211 47899999999753 44554 443322111 111111 110
Q ss_pred EE-----EEec-cchhHHHHHHHHHH--hCCCcEEEEecChhhHHHHHHHHHHc-------------------------C
Q 038133 492 HV-----VMMK-ESEKFSRLQRLLDE--LGDKTAIVFVNTKKNADMVAKNLDKL-------------------------G 538 (671)
Q Consensus 492 ~~-----~~~~-~~~k~~~L~~ll~~--~~~~~iIVF~~~~~~~~~l~~~L~~~-------------------------~ 538 (671)
.+ .... .......+..++.. ..++++||||++++.|+.++..|... .
T Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 285 (674)
T PRK01172 206 GILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLP 285 (674)
T ss_pred EEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHh
Confidence 00 0111 11011112233332 24789999999999999999988653 1
Q ss_pred CeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCC---------CCCHHHHHHHhcccCCCC
Q 038133 539 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM---------PGNIEMYTHRIGRTGRAG 609 (671)
Q Consensus 539 ~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~---------p~s~~~y~QriGR~gR~G 609 (671)
.++..+||+|++++|..+++.|++|.++|||||+++++|+|+|+.. ||+.+. |.++.+|.||+|||||.|
T Consensus 286 ~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 286 HGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred cCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 3578899999999999999999999999999999999999999865 444442 458899999999999998
Q ss_pred C--ccEEEEEecCCCchHHHHHHHHHHhcC----CCCChhHHhc--hhccCCCCCCCCC
Q 038133 610 K--TGVATTFLTFHDTDVFYDLKQMLIQSN----SPVPPELAKH--EASKFKPGTIPDR 660 (671)
Q Consensus 610 ~--~g~ai~~~~~~d~~~~~~l~~~l~~~~----~~vp~~L~~~--~~~~~~~g~i~~~ 660 (671)
. .|.+++++...+ .+..+.+++.... +.+...+..+ ..+.+..|++.+.
T Consensus 365 ~d~~g~~~i~~~~~~--~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~ 421 (674)
T PRK01172 365 YDQYGIGYIYAASPA--SYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSM 421 (674)
T ss_pred CCCcceEEEEecCcc--cHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCH
Confidence 5 577888765433 2233555554332 2233222222 2366666766554
No 51
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=8.3e-42 Score=389.60 Aligned_cols=363 Identities=21% Similarity=0.230 Sum_probs=294.2
Q ss_pred chHHHHHHHHHHHHhhhhccccccccCCCChhhhhccCHHHHHHHHhhcCcccccCCCCCCCCCcccCCCCHHHHHHHHH
Q 038133 189 KPEEAAALKLKEEAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVER 268 (671)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~ 268 (671)
+.+.+++++.++.|.++++.|++|..+ .......+..+...|.+.|++ ..+++++.+|.+
T Consensus 546 k~K~K~~~~v~diA~eLi~lyA~R~~~---~G~af~~d~~~q~~F~~~FPy-----------------eET~DQl~AI~e 605 (1139)
T COG1197 546 KAKAKARKKVRDIAAELIKLYAKRQAK---KGFAFPPDTEWQEEFEASFPY-----------------EETPDQLKAIEE 605 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCCCCChHHHHHHHhcCCC-----------------cCCHHHHHHHHH
Confidence 345667788999999999999998777 455566777788889999988 444555554444
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+.-+...+.. -|.++||++|.|||.+++.+++..++ +|++|.|||||+.||+|+++.|+
T Consensus 606 Vk~DM~~~kp----------MDRLiCGDVGFGKTEVAmRAAFkAV~-----------~GKQVAvLVPTTlLA~QHy~tFk 664 (1139)
T COG1197 606 VKRDMESGKP----------MDRLICGDVGFGKTEVAMRAAFKAVM-----------DGKQVAVLVPTTLLAQQHYETFK 664 (1139)
T ss_pred HHHHhccCCc----------chheeecCcCCcHHHHHHHHHHHHhc-----------CCCeEEEEcccHHhHHHHHHHHH
Confidence 3222222222 28999999999999999999999986 69999999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhc----CCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHH
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQ----GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 424 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~----~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~ 424 (671)
+.+.++++++..++...+.+++...+.. ..||||||+..|...+ .+.++++|||||.|++ +-....
T Consensus 665 eRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv-----~FkdLGLlIIDEEqRF-----GVk~KE 734 (1139)
T COG1197 665 ERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDV-----KFKDLGLLIIDEEQRF-----GVKHKE 734 (1139)
T ss_pred HHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCc-----EEecCCeEEEechhhc-----CccHHH
Confidence 9999999999999999998887765543 4899999987764433 4899999999999996 222233
Q ss_pred HHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHH
Q 038133 425 VLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSR 504 (671)
Q Consensus 425 il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~ 504 (671)
-+..+.. ...++-+|||+.|....++...+++-.++..++.+... +..++...++.--..+
T Consensus 735 kLK~Lr~-----------------~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p--V~T~V~~~d~~~ireA 795 (1139)
T COG1197 735 KLKELRA-----------------NVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP--VKTFVSEYDDLLIREA 795 (1139)
T ss_pred HHHHHhc-----------------cCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc--eEEEEecCChHHHHHH
Confidence 3444433 46699999999999999999999998888777665443 4444444444444444
Q ss_pred HHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc--CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCC
Q 038133 505 LQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL--GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPD 582 (671)
Q Consensus 505 L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~ 582 (671)
+...|.. +|++...+|.+++++.++..|+.+ ..++++.||.|+..+.+.+|..|.+|+++|||||.+++.|||||+
T Consensus 796 I~REl~R--gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 796 ILRELLR--GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHHHHhc--CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCC
Confidence 5444444 889999999999999999999998 778999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCC-CHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 583 VAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 583 v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
+|++|.-+... ..++..|..||+||.++.|+||+++.+...
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~ 915 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKA 915 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccc
Confidence 99999766554 789999999999999999999999997653
No 52
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.5e-39 Score=361.73 Aligned_cols=335 Identities=23% Similarity=0.266 Sum_probs=259.8
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|. .|+|+|..++|.+++|+ |+.+.||+|||++|++|++.... .|+.++||+||++||.|+++++.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-----------~G~~v~VvTptreLA~qdae~~~ 165 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-----------AGLPVHVITVNDYLAERDAELMR 165 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-----------cCCeEEEEcCcHHHHHHHHHHHH
Confidence 455 89999999999999998 99999999999999999998764 58899999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcc-------------------------cccCCc
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRY-------------------------AVLNQC 402 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~-------------------------~~l~~~ 402 (671)
.++..+|+++.+++||.+... .....+|+|+|+|...| .|+|..+. .....+
T Consensus 166 ~l~~~lGlsv~~i~gg~~~~~--r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~ 243 (656)
T PRK12898 166 PLYEALGLTVGCVVEDQSPDE--RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGL 243 (656)
T ss_pred HHHhhcCCEEEEEeCCCCHHH--HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccc
Confidence 999999999999999987543 34456899999999888 55554332 124568
Q ss_pred cEEEEcccchhh-c-----------------cCChHHHHHHHHhCCCC-------------------------------C
Q 038133 403 NYVVLDEADRMI-D-----------------MGFEPQVVGVLDAMPSS-------------------------------N 433 (671)
Q Consensus 403 ~~vViDEah~~~-~-----------------~~f~~~i~~il~~l~~~-------------------------------~ 433 (671)
.++||||+|.++ | ..+...+..+...+... .
T Consensus 244 ~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~ 323 (656)
T PRK12898 244 HFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPA 323 (656)
T ss_pred ceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhh
Confidence 899999999753 1 01111122222222110 0
Q ss_pred CCCCCchh---------------------------------------------------------------------hhh
Q 038133 434 LKPENEDE---------------------------------------------------------------------ELD 444 (671)
Q Consensus 434 ~~~~~~~~---------------------------------------------------------------------~~~ 444 (671)
........ ...
T Consensus 324 ~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~ 403 (656)
T PRK12898 324 WRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQR 403 (656)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHH
Confidence 00000000 000
Q ss_pred hhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhC--CCcEEEEec
Q 038133 445 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG--DKTAIVFVN 522 (671)
Q Consensus 445 ~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~--~~~iIVF~~ 522 (671)
-...|..+.+||||.+...+.+...|..++..|....+ ......+.+++.+...|...|..++.... +.++||||+
T Consensus 404 ~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp--~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~ 481 (656)
T PRK12898 404 FFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRP--SQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTR 481 (656)
T ss_pred HHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCC--ccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 02346677889999999888899989888655544333 33334445566777889999999987643 678999999
Q ss_pred ChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCC---CCc-----EEEEcCCCCC
Q 038133 523 TKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP---DVA-----HVINYDMPGN 594 (671)
Q Consensus 523 ~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp---~v~-----~VI~~d~p~s 594 (671)
++..++.++..|.+.|+.+..+||.++ +++..+..|..+...|+|||++++||+||+ +|. +||+|++|.|
T Consensus 482 t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s 559 (656)
T PRK12898 482 SVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDS 559 (656)
T ss_pred cHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCC
Confidence 999999999999999999999999865 555666667766778999999999999999 666 9999999999
Q ss_pred HHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 595 IEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 595 ~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
...|.||+||+||.|.+|.|++|++.+|.
T Consensus 560 ~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 560 ARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999999999998773
No 53
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.8e-39 Score=386.97 Aligned_cols=315 Identities=25% Similarity=0.325 Sum_probs=248.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|+ .|+|+|..++|.++.|+|++++||||||||+ |+++++.++.. .++++|||+||++||.|+++.+.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----------KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeccHHHHHHHHHHHH
Confidence 477 8999999999999999999999999999996 55666655532 58899999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCc-----hHHHHHHHhc-CCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc-------
Q 038133 349 KFAHYLGIKVVSIVGGQS-----IEEQGFRIRQ-GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID------- 415 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~-----~~~~~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~------- 415 (671)
.++...++.+..++|+.+ ..++...+.. +++|+|+||++|.+.+. .+....+++|||||||+|++
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~ 222 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDK 222 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhh
Confidence 999999998888887754 2333334444 58999999999998876 34456799999999999986
Q ss_pred ----cCCh-HHHHHHHHhCCCCCCC-CCCc-hhhhhh-----hhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCC
Q 038133 416 ----MGFE-PQVVGVLDAMPSSNLK-PENE-DEELDE-----KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG 483 (671)
Q Consensus 416 ----~~f~-~~i~~il~~l~~~~~~-~~~~-~~~~~~-----~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~ 483 (671)
+||. ..+..++..++..+.. +... ...+.. .....|+++||||+++..... .++.++..+.++...
T Consensus 223 ~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~~ll~~~v~~~~ 300 (1176)
T PRK09401 223 LLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--KLFRELLGFEVGSPV 300 (1176)
T ss_pred HHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--HHhhccceEEecCcc
Confidence 7885 6888888888753221 0000 001111 112689999999998753221 234555556666665
Q ss_pred ccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhh---HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHh
Q 038133 484 KATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKN---ADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560 (671)
Q Consensus 484 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~---~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F 560 (671)
....++.+.+.... .+...|..++... +.++||||+++.. ++.+++.|...|+.+..+||+| ...++.|
T Consensus 301 ~~~rnI~~~yi~~~--~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 301 FYLRNIVDSYIVDE--DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred cccCCceEEEEEcc--cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 55666777666544 6777888888775 4689999999887 9999999999999999999999 2346999
Q ss_pred hcCCCcEEEe----cccccccCCCCC-CcEEEEcCCCC------CHHHHHHHhcccCC
Q 038133 561 RTKRYNVLVA----TDVAGRGIDIPD-VAHVINYDMPG------NIEMYTHRIGRTGR 607 (671)
Q Consensus 561 ~~g~~~VLVa----T~~~~~GiDIp~-v~~VI~~d~p~------s~~~y~QriGR~gR 607 (671)
++|+++|||| |++++||||+|+ |++|||||+|. ....|.||+||+..
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999 699999999999 89999999998 66789999999863
No 54
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.9e-39 Score=363.69 Aligned_cols=340 Identities=26% Similarity=0.352 Sum_probs=275.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecc
Q 038133 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPT 336 (671)
Q Consensus 257 ~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Pt 336 (671)
-|++.+.+.+... |..|||.|.+|||.+.+|+|++++||||||||+++++|++..+.... ......|-++|||.|.
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIsPL 82 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYISPL 82 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeCcH
Confidence 4788999999888 99999999999999999999999999999999999999999998753 1122467899999999
Q ss_pred hhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcc--cccCCccEEEEcccchhh
Q 038133 337 RELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY--AVLNQCNYVVLDEADRMI 414 (671)
Q Consensus 337 r~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~--~~l~~~~~vViDEah~~~ 414 (671)
++|+..+...+......+|+.+..-+|.++..+......+.++|+|+||+.|.-++.... ..|.++.+|||||.|.+.
T Consensus 83 kALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~ 162 (814)
T COG1201 83 KALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALA 162 (814)
T ss_pred HHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhh
Confidence 999999999999999999999999999999888888888899999999999988776533 258999999999999998
Q ss_pred ccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCC--CeEEEECCCCccccceeEE
Q 038133 415 DMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRN--PVVVTIGTAGKATELISQH 492 (671)
Q Consensus 415 ~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~--p~~i~i~~~~~~~~~i~~~ 492 (671)
+...+.++.--+..+..... ..|.+++|||..+. +..++...+. +..+......... ...
T Consensus 163 ~sKRG~~Lsl~LeRL~~l~~--------------~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~~---~i~ 224 (814)
T COG1201 163 ESKRGVQLALSLERLRELAG--------------DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKKL---EIK 224 (814)
T ss_pred ccccchhhhhhHHHHHhhCc--------------ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCcc---eEE
Confidence 87777776665555543211 47999999999854 3444444443 3333333222221 111
Q ss_pred EEEec-c--------chhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcC-CeEEEecCCCCHHHHHHHHHHhhc
Q 038133 493 VVMMK-E--------SEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLG-YRVTTLHGGKSQEQREISLEGFRT 562 (671)
Q Consensus 493 ~~~~~-~--------~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~-~~v~~lhg~~~~~~R~~~l~~F~~ 562 (671)
+.... . ......+.++++. ...+|||+||+..++.++..|.+.+ ..+..+||+++.++|..+.+.|++
T Consensus 225 v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~ 302 (814)
T COG1201 225 VISPVEDLIYDEELWAALYERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE 302 (814)
T ss_pred EEecCCccccccchhHHHHHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc
Confidence 11111 1 2234555556655 3489999999999999999999986 899999999999999999999999
Q ss_pred CCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCC-CCccEEEEEecC
Q 038133 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA-GKTGVATTFLTF 620 (671)
Q Consensus 563 g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~-G~~g~ai~~~~~ 620 (671)
|+.+++|||+.++-||||.+++.||+|+.|.++..+.||+||+|.. |....++.+...
T Consensus 303 G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 303 GELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999999999999999999999964 544555555544
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.3e-39 Score=365.93 Aligned_cols=311 Identities=21% Similarity=0.272 Sum_probs=234.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCChHHHH---------HHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHH
Q 038133 276 PIQMAAIPLGLQQRDVIGIAETGSGKTAA---------FVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEE 346 (671)
Q Consensus 276 ~~Q~~ai~~il~~rd~ii~a~TGsGKT~~---------~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~ 346 (671)
.+|.++++.+++|+++|++|+||||||.+ |+.|.+..+.... ....+++++|++||++||.|+...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-----~~~~~~~ilvt~PrreLa~qi~~~ 241 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-----PNFIERPIVLSLPRVALVRLHSIT 241 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-----cccCCcEEEEECcHHHHHHHHHHH
Confidence 57999999999999999999999999987 3344444432110 112467899999999999999988
Q ss_pred HHHHHhh---cCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHH
Q 038133 347 TVKFAHY---LGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVV 423 (671)
Q Consensus 347 ~~k~~~~---~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~ 423 (671)
+.+.... .++.+...+||.+. .+......+.+|+|+|++... ..++.+++|||||||.+...+ +.+.
T Consensus 242 i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 242 LLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hHHH
Confidence 8775433 35677888999873 221222236899999986311 237889999999999987765 4455
Q ss_pred HHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEec------
Q 038133 424 GVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK------ 497 (671)
Q Consensus 424 ~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~------ 497 (671)
.++..+... .+|+++||||++..++.+ ..|+.+|..+.+.. .....+.+.+....
T Consensus 312 ~llk~~~~~----------------~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~ 372 (675)
T PHA02653 312 AVARKHIDK----------------IRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNK 372 (675)
T ss_pred HHHHHhhhh----------------cCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccc
Confidence 665544321 358999999999888877 57888888887753 22234444433211
Q ss_pred ----cchhHHHHHHHHHHh---CCCcEEEEecChhhHHHHHHHHHHc--CCeEEEecCCCCHHHHHHHHHHh-hcCCCcE
Q 038133 498 ----ESEKFSRLQRLLDEL---GDKTAIVFVNTKKNADMVAKNLDKL--GYRVTTLHGGKSQEQREISLEGF-RTKRYNV 567 (671)
Q Consensus 498 ----~~~k~~~L~~ll~~~---~~~~iIVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~l~~F-~~g~~~V 567 (671)
...+.. +...+... .++.+||||+++..|+.+++.|.+. ++.+..+||++++. +.+++.| ++|..+|
T Consensus 373 ~~y~~~~k~~-~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kI 449 (675)
T PHA02653 373 RAYIEEEKKN-IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSI 449 (675)
T ss_pred hhhhHHHHHH-HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeE
Confidence 112222 23333321 3568999999999999999999987 78999999999975 5667777 7899999
Q ss_pred EEecccccccCCCCCCcEEEEcC---CCC---------CHHHHHHHhcccCCCCCccEEEEEecCCCch
Q 038133 568 LVATDVAGRGIDIPDVAHVINYD---MPG---------NIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624 (671)
Q Consensus 568 LVaT~~~~~GiDIp~v~~VI~~d---~p~---------s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~ 624 (671)
||||+++++|||||+|++||+++ .|. |.++|.||+|||||. ++|.|+.|++.++..
T Consensus 450 LVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 450 IISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK 517 (675)
T ss_pred EeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH
Confidence 99999999999999999999998 554 888999999999999 799999999987643
No 56
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-39 Score=353.64 Aligned_cols=329 Identities=27% Similarity=0.358 Sum_probs=260.2
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 264 RAVER-VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 264 ~~i~~-~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
..|+. +||..++|-|.++|..+++++|+|++.|||.|||+||.+|++-. .| .+|||.|..+|-..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------------~G-~TLVVSPLiSLM~D 72 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------------EG-LTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------------CC-CEEEECchHHHHHH
Confidence 33433 59999999999999999999999999999999999999999753 23 68999999999986
Q ss_pred HHHHHHHHHhhcCcEEEEEECCCchHHHHHHHh---cC-CeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC-
Q 038133 343 IEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIR---QG-CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG- 417 (671)
Q Consensus 343 i~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~---~~-~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~- 417 (671)
....+.. .|+.+..+.+..+..+....+. .| .++++-+|++|..-.....+.-..+.++||||||++.+||
T Consensus 73 QV~~l~~----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGh 148 (590)
T COG0514 73 QVDQLEA----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGH 148 (590)
T ss_pred HHHHHHH----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCC
Confidence 5555554 5899999999888777654433 33 7999999999965444444446678999999999999998
Q ss_pred -ChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCe-EEEECCCCccccceeEEEEE
Q 038133 418 -FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPV-VVTIGTAGKATELISQHVVM 495 (671)
Q Consensus 418 -f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~-~i~i~~~~~~~~~i~~~~~~ 495 (671)
|+|.+..+-....... ...++.+|||.++.+...+...|.-.. .+.+...... ++...+..
T Consensus 149 dFRP~Y~~lg~l~~~~~---------------~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp--Ni~~~v~~ 211 (590)
T COG0514 149 DFRPDYRRLGRLRAGLP---------------NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP--NLALKVVE 211 (590)
T ss_pred ccCHhHHHHHHHHhhCC---------------CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc--hhhhhhhh
Confidence 9998877654433211 356999999999999887777665322 2333332222 22222211
Q ss_pred eccchhHHHHHHHHH--HhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc
Q 038133 496 MKESEKFSRLQRLLD--ELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573 (671)
Q Consensus 496 ~~~~~k~~~L~~ll~--~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~ 573 (671)
.. .-...+.-+.. ....++.||||.|++.++.+++.|...|+.+..|||||+.++|+.+.+.|..++.+|+|||.+
T Consensus 212 ~~--~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~A 289 (590)
T COG0514 212 KG--EPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNA 289 (590)
T ss_pred cc--cHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Confidence 11 11222222222 345778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHH
Q 038133 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629 (671)
Q Consensus 574 ~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l 629 (671)
+|+|||-|||.+|||||+|.|++.|.|-+|||||.|....|++|+.+.|..+...+
T Consensus 290 FGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 290 FGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred ccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986544333
No 57
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.2e-38 Score=358.17 Aligned_cols=336 Identities=22% Similarity=0.287 Sum_probs=257.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++.... .|+.++|++||++||.|.++++.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-----------~G~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-----------EGKGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-----------cCCCeEEEeCCHHHHHHHHHHHH
Confidence 466 89999999999998886 99999999999999999986654 58899999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcc------cccCCccEEEEcccchhh-cc----
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRY------AVLNQCNYVVLDEADRMI-DM---- 416 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~------~~l~~~~~vViDEah~~~-~~---- 416 (671)
.++..+|+++.+++|+.+...+.. ...+|+|+||||++| .|+|..+. ..+..+.++||||||.|+ |.
T Consensus 141 ~l~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tp 219 (790)
T PRK09200 141 QVYEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTP 219 (790)
T ss_pred HHHhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCc
Confidence 999999999999999998333322 234699999999999 66665432 357889999999999874 10
Q ss_pred -----------CChHHHHHHHHhCCCC-----------------------------CCCC-CCch------hhh------
Q 038133 417 -----------GFEPQVVGVLDAMPSS-----------------------------NLKP-ENED------EEL------ 443 (671)
Q Consensus 417 -----------~f~~~i~~il~~l~~~-----------------------------~~~~-~~~~------~~~------ 443 (671)
.....+..+...+... ++-. .... ..+
T Consensus 220 liisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~ 299 (790)
T PRK09200 220 LIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLF 299 (790)
T ss_pred eeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHh
Confidence 1111222222222110 0000 0000 000
Q ss_pred ----------------------------------------------------------hhhhhcceEEEEeccCCHHHHH
Q 038133 444 ----------------------------------------------------------DEKRIYRTTYMFSATMPPAVER 465 (671)
Q Consensus 444 ----------------------------------------------------------~~~~~~~q~i~~SAT~~~~~~~ 465 (671)
.-.+.|..+.+||.|.....+.
T Consensus 300 ~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e 379 (790)
T PRK09200 300 KRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKE 379 (790)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHH
Confidence 0023356678899998776666
Q ss_pred HHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEE
Q 038133 466 LARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTT 543 (671)
Q Consensus 466 l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~ 543 (671)
+...|--+ ++.+++..+....-.....+.+...|...|...+... .+.|+||||+++..++.++..|.+.|+++..
T Consensus 380 ~~~~Y~l~--v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~ 457 (790)
T PRK09200 380 FFEVYNME--VVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNL 457 (790)
T ss_pred HHHHhCCc--EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEE
Confidence 76655433 3444444333222223345567778999998888763 5789999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCC---CCCc-----EEEEcCCCCCHHHHHHHhcccCCCCCccEEE
Q 038133 544 LHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDI---PDVA-----HVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 615 (671)
Q Consensus 544 lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDI---p~v~-----~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai 615 (671)
+||.+.+.++..+...+..| .|+|||++++||+|| |+|. +||+|++|.|...|.||+||+||.|.+|.|+
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~ 535 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ 535 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE
Confidence 99999988888777777766 799999999999999 6998 9999999999999999999999999999999
Q ss_pred EEecCCCc
Q 038133 616 TFLTFHDT 623 (671)
Q Consensus 616 ~~~~~~d~ 623 (671)
+|++.+|.
T Consensus 536 ~~is~eD~ 543 (790)
T PRK09200 536 FFISLEDD 543 (790)
T ss_pred EEEcchHH
Confidence 99998763
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.3e-38 Score=386.86 Aligned_cols=334 Identities=19% Similarity=0.268 Sum_probs=255.1
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhh
Q 038133 261 ELLRAVER-VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339 (671)
Q Consensus 261 ~i~~~i~~-~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~L 339 (671)
++.+.+.+ +|| .|+++|.++||.+++|+|++++||||||||++++++++... ..|+++|||+||++|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-----------~~g~~aLVl~PTreL 134 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-----------LKGKKCYIILPTTLL 134 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-----------hcCCeEEEEECHHHH
Confidence 34455655 799 69999999999999999999999999999996665554432 157899999999999
Q ss_pred HHHHHHHHHHHHhhc--CcEEEEEECCCchHHHHH---HHhcC-CeEEEEcchHHHHHHhhcccccCCccEEEEcccchh
Q 038133 340 AQQIEEETVKFAHYL--GIKVVSIVGGQSIEEQGF---RIRQG-CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRM 413 (671)
Q Consensus 340 a~Qi~~~~~k~~~~~--~i~v~~~~gg~~~~~~~~---~l~~~-~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~ 413 (671)
+.|+.+.+..++..+ ++.+..++|+.+..++.. .+..+ ++|+|+||++|.+.+... . ..++++|||||||+|
T Consensus 135 a~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 135 VKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceec
Confidence 999999999998876 467788889988776533 34444 899999999998876542 2 267999999999999
Q ss_pred hc-----------cCChHHHHH----HHHhCCCCCCCCCCch-hhh----hhhhhcce-EEEEeccCCHHHHHHHHHhcC
Q 038133 414 ID-----------MGFEPQVVG----VLDAMPSSNLKPENED-EEL----DEKRIYRT-TYMFSATMPPAVERLARKYLR 472 (671)
Q Consensus 414 ~~-----------~~f~~~i~~----il~~l~~~~~~~~~~~-~~~----~~~~~~~q-~i~~SAT~~~~~~~l~~~~l~ 472 (671)
++ +||.+.+.. ++...+..+..+..+. ..+ ...+...| ++++|||+++... ...++.
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhh
Confidence 86 589888874 3322111111110000 000 01112344 6789999997422 223457
Q ss_pred CCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhh---HHHHHHHHHHcCCeEEEecCCCC
Q 038133 473 NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKN---ADMVAKNLDKLGYRVTTLHGGKS 549 (671)
Q Consensus 473 ~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~---~~~l~~~L~~~~~~v~~lhg~~~ 549 (671)
++..+.++........+.+.+.......+ ..|..++... +..+||||++++. |+.+++.|...|+++..+||+
T Consensus 291 ~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 291 ELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred cCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 77778887776666777777765544444 5788888776 5789999999876 589999999999999999995
Q ss_pred HHHHHHHHHHhhcCCCcEEEec----ccccccCCCCC-CcEEEEcCCCC---CHHHHHHHh-------------cccCCC
Q 038133 550 QEQREISLEGFRTKRYNVLVAT----DVAGRGIDIPD-VAHVINYDMPG---NIEMYTHRI-------------GRTGRA 608 (671)
Q Consensus 550 ~~~R~~~l~~F~~g~~~VLVaT----~~~~~GiDIp~-v~~VI~~d~p~---s~~~y~Qri-------------GR~gR~ 608 (671)
|..+++.|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|-. ||+||.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8899999999999999999 58999999999 99999999999 888777765 999999
Q ss_pred CCccEEEEE
Q 038133 609 GKTGVATTF 617 (671)
Q Consensus 609 G~~g~ai~~ 617 (671)
|..+.++..
T Consensus 444 g~~~~~~~~ 452 (1638)
T PRK14701 444 GIPIEGVLD 452 (1638)
T ss_pred CCcchhHHH
Confidence 988777633
No 59
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2e-38 Score=378.69 Aligned_cols=306 Identities=25% Similarity=0.300 Sum_probs=224.5
Q ss_pred EEcCCCChHHHHHHHHHHHHHhcCCCCC--cccccCCCeEEEEecchhhHHHHHHHHHHHHh------------hcCcEE
Q 038133 293 GIAETGSGKTAAFVLPMLTYISRLPPIS--EENEAEGPYAVVMAPTRELAQQIEEETVKFAH------------YLGIKV 358 (671)
Q Consensus 293 i~a~TGsGKT~~~ll~~l~~l~~~~~~~--~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~------------~~~i~v 358 (671)
|+||||||||++|++|++..+...+... ......+.++|||+|+++|+.|+++.++..+. ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999887532110 01113468999999999999999998875322 247899
Q ss_pred EEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcc-cccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCC
Q 038133 359 VSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY-AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPE 437 (671)
Q Consensus 359 ~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~-~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~ 437 (671)
...+|+.+..++...+.+.++|||+||++|..++.++. ..++++++|||||+|.|.+..++.++...+..+.....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~--- 157 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH--- 157 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC---
Confidence 99999999888776777789999999999988876543 36899999999999999987666555444444322100
Q ss_pred CchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcC--CCeEEEECCCCccccceeEEEEEeccch---------------
Q 038133 438 NEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR--NPVVVTIGTAGKATELISQHVVMMKESE--------------- 500 (671)
Q Consensus 438 ~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~--~p~~i~i~~~~~~~~~i~~~~~~~~~~~--------------- 500 (671)
...|+|++|||+++. +.++. |+. .|..+.. ........+. .+.......
T Consensus 158 ----------~~~QrIgLSATI~n~-eevA~-~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~ 223 (1490)
T PRK09751 158 ----------TSAQRIGLSATVRSA-SDVAA-FLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHA 223 (1490)
T ss_pred ----------CCCeEEEEEeeCCCH-HHHHH-HhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccch
Confidence 147999999999874 55654 443 3544432 2221111222 111111100
Q ss_pred -----hH-HHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHcC---------------------------------Ce
Q 038133 501 -----KF-SRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLG---------------------------------YR 540 (671)
Q Consensus 501 -----k~-~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~---------------------------------~~ 540 (671)
.. .....++... ...++|||||++..|+.++..|.+.. +.
T Consensus 224 ~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 303 (1490)
T PRK09751 224 GREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFI 303 (1490)
T ss_pred hhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccccccee
Confidence 00 0112233322 36789999999999999999997641 12
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCC-CCccEEE
Q 038133 541 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA-GKTGVAT 615 (671)
Q Consensus 541 v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~-G~~g~ai 615 (671)
+..+||++++++|..+++.|++|.++|||||+.+++||||+++++||+|+.|.++.+|+||+||+||. |..+.++
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999996 2334444
No 60
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.9e-37 Score=344.91 Aligned_cols=336 Identities=24% Similarity=0.292 Sum_probs=258.4
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|. .|+++|..+.+.++.|+ |+.++||+|||++|++|++...+ .|..|+|++||++||.|.++++.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL-----------~G~~V~VvTpt~~LA~qdae~~~ 118 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL-----------TGKGVHVVTVNDYLAQRDAEWMG 118 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH-----------hCCCEEEEcCCHHHHHHHHHHHH
Confidence 455 78999999988888775 99999999999999999964443 36679999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhc------ccccCCccEEEEcccchhhc-c----
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERR------YAVLNQCNYVVLDEADRMID-M---- 416 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~------~~~l~~~~~vViDEah~~~~-~---- 416 (671)
.++..+|+++.+++|+.+..+....+ .|+|+||||++| .+++..+ ...+..+.++||||+|+|+- .
T Consensus 119 ~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtp 196 (745)
T TIGR00963 119 QVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTP 196 (745)
T ss_pred HHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhH
Confidence 99999999999999998876654433 589999999999 8888766 24678999999999998752 0
Q ss_pred ----C-------ChHHHHHHHHhCC-----------------------------CCCCCCC-Cc-h-----hhh------
Q 038133 417 ----G-------FEPQVVGVLDAMP-----------------------------SSNLKPE-NE-D-----EEL------ 443 (671)
Q Consensus 417 ----~-------f~~~i~~il~~l~-----------------------------~~~~~~~-~~-~-----~~~------ 443 (671)
| .......+...+. ..++-.. .. . ..+
T Consensus 197 Liisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~ 276 (745)
T TIGR00963 197 LIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELF 276 (745)
T ss_pred HhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHH
Confidence 0 0000011111111 0000000 00 0 000
Q ss_pred ----------------------------------------------------------hhhhhcceEEEEeccCCHHHHH
Q 038133 444 ----------------------------------------------------------DEKRIYRTTYMFSATMPPAVER 465 (671)
Q Consensus 444 ----------------------------------------------------------~~~~~~~q~i~~SAT~~~~~~~ 465 (671)
.-.+.|..+.+||.|.......
T Consensus 277 ~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E 356 (745)
T TIGR00963 277 EKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEE 356 (745)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHH
Confidence 0023366678899999877777
Q ss_pred HHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHH--hCCCcEEEEecChhhHHHHHHHHHHcCCeEEE
Q 038133 466 LARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE--LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTT 543 (671)
Q Consensus 466 l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~--~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~ 543 (671)
+...|--+ ++.+++..+....-....++.+...|+..+...+.. ..+.|+||||+++..++.+++.|.+.|+++..
T Consensus 357 ~~~iY~l~--vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~ 434 (745)
T TIGR00963 357 FEKIYNLE--VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNV 434 (745)
T ss_pred HHHHhCCC--EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEE
Confidence 76666544 344444433332223334455667788888776643 35889999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCC-------CcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEE
Q 038133 544 LHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPD-------VAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 616 (671)
Q Consensus 544 lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~-------v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~ 616 (671)
+||. +.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.|...|.|++||+||.|.+|.+.+
T Consensus 435 Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 435 LNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred eeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9998 889999999999999999999999999999998 5699999999999999999999999999999999
Q ss_pred EecCCCch
Q 038133 617 FLTFHDTD 624 (671)
Q Consensus 617 ~~~~~d~~ 624 (671)
|++.+|.-
T Consensus 513 ~ls~eD~l 520 (745)
T TIGR00963 513 FLSLEDNL 520 (745)
T ss_pred EEeccHHH
Confidence 99988743
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.6e-37 Score=358.95 Aligned_cols=300 Identities=19% Similarity=0.253 Sum_probs=231.2
Q ss_pred HHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH-HHhhcCcEE
Q 038133 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK-FAHYLGIKV 358 (671)
Q Consensus 280 ~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k-~~~~~~i~v 358 (671)
+.+..+.+++++|++|+||||||++|.++++.... .+++++|++|||++|.|++..+.+ +....|..|
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 45556667889999999999999999999987652 356899999999999999987753 334455666
Q ss_pred EEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccc-hhhccCChHHH-HHHHHhCCCCCCCC
Q 038133 359 VSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD-RMIDMGFEPQV-VGVLDAMPSSNLKP 436 (671)
Q Consensus 359 ~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah-~~~~~~f~~~i-~~il~~l~~~~~~~ 436 (671)
...+++.+ ......+|+|+|+|+|.+.+... ..++++++|||||+| ++++.++.-.+ ..+...++.
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~----- 145 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLRE----- 145 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCC-----
Confidence 66665543 23345789999999999988764 459999999999999 57777665433 334444443
Q ss_pred CCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhH-----HHHHHHHHH
Q 038133 437 ENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKF-----SRLQRLLDE 511 (671)
Q Consensus 437 ~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~-----~~L~~ll~~ 511 (671)
..++++||||++... ...|+.++.++.+... ...+.+.+.......++ ..+..++..
T Consensus 146 ------------dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~ 207 (819)
T TIGR01970 146 ------------DLKILAMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS 207 (819)
T ss_pred ------------CceEEEEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh
Confidence 578999999998753 3567766555544322 12234444333323222 233444443
Q ss_pred hCCCcEEEEecChhhHHHHHHHHHH---cCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE
Q 038133 512 LGDKTAIVFVNTKKNADMVAKNLDK---LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588 (671)
Q Consensus 512 ~~~~~iIVF~~~~~~~~~l~~~L~~---~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~ 588 (671)
..+.+||||+++.+++.+++.|.+ .++.+..+||+|++++|..+++.|++|..+|||||+++++|||||+|++||+
T Consensus 208 -~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 208 -ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred -cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEE
Confidence 368899999999999999999987 3788999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------------------CHHHHHHHhcccCCCCCccEEEEEecCCC
Q 038133 589 YDMPG------------------NIEMYTHRIGRTGRAGKTGVATTFLTFHD 622 (671)
Q Consensus 589 ~d~p~------------------s~~~y~QriGR~gR~G~~g~ai~~~~~~d 622 (671)
++.+. |..+|.||+||+||. .+|.||.|++.++
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 99875 345699999999999 7999999998654
No 62
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4e-37 Score=346.05 Aligned_cols=334 Identities=21% Similarity=0.230 Sum_probs=249.1
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhh
Q 038133 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHY 353 (671)
Q Consensus 274 p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~ 353 (671)
++|+|.|++..+..++..|+.++||+|||++|++|++...+ .|+.++|++|+++||.|+.+++..++..
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL-----------~g~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL-----------TGKGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh-----------cCCceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 45666666666665556899999999999999999876654 4667999999999999999999999999
Q ss_pred cCcEEEEEECCCc---hHHHHHHHhcCCeEEEEcchHH-HHHHhhc------ccccCCccEEEEcccchhhc-cC-----
Q 038133 354 LGIKVVSIVGGQS---IEEQGFRIRQGCEVVIATPGRL-IDCLERR------YAVLNQCNYVVLDEADRMID-MG----- 417 (671)
Q Consensus 354 ~~i~v~~~~gg~~---~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~------~~~l~~~~~vViDEah~~~~-~~----- 417 (671)
+|+++.+++++.. ..........+|+|+||||++| .++|... ...+..+.++|+||||.|+- ..
T Consensus 138 LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 138 LGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred cCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 9999998887632 2222233335799999999999 5666432 23578899999999999842 10
Q ss_pred ----------ChHHHHHHHHhCCCC-----------------------------CCC-CCCchh----------------
Q 038133 418 ----------FEPQVVGVLDAMPSS-----------------------------NLK-PENEDE---------------- 441 (671)
Q Consensus 418 ----------f~~~i~~il~~l~~~-----------------------------~~~-~~~~~~---------------- 441 (671)
+...+..+...+... ++- +.....
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 111122222222211 100 000000
Q ss_pred ---------------------------------h---------------------hhhhhhcceEEEEeccCCHHHHHHH
Q 038133 442 ---------------------------------E---------------------LDEKRIYRTTYMFSATMPPAVERLA 467 (671)
Q Consensus 442 ---------------------------------~---------------------~~~~~~~~q~i~~SAT~~~~~~~l~ 467 (671)
. ..-.+.|..+.+||+|.......+.
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 0 0002346678889999877777776
Q ss_pred HHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHH--hCCCcEEEEecChhhHHHHHHHHHHcCCeEEEec
Q 038133 468 RKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE--LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLH 545 (671)
Q Consensus 468 ~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~--~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lh 545 (671)
..|-- .++.+++..+....-....++.....|...+...+.. ..+.|+||||+++..++.++..|.+.|+++..+|
T Consensus 378 ~iY~l--~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~ 455 (762)
T TIGR03714 378 ETYSL--SVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLN 455 (762)
T ss_pred HHhCC--CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEec
Confidence 65533 3455555443333333445667788899999988876 3578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCC---------CCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEE
Q 038133 546 GGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP---------DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 616 (671)
Q Consensus 546 g~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp---------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~ 616 (671)
|.+++.++..+...++.| .|+|||++++||+||| ++.+|++|++|....+ .||+||+||.|.+|.+++
T Consensus 456 a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 456 AQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred CCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 999998888777777666 6999999999999999 9999999999998767 999999999999999999
Q ss_pred EecCCCc
Q 038133 617 FLTFHDT 623 (671)
Q Consensus 617 ~~~~~d~ 623 (671)
|++.+|.
T Consensus 533 ~is~eD~ 539 (762)
T TIGR03714 533 FVSLEDD 539 (762)
T ss_pred EEccchh
Confidence 9998764
No 63
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-36 Score=318.58 Aligned_cols=324 Identities=24% Similarity=0.304 Sum_probs=243.9
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 271 YKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 271 ~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
.-+++.||.......+.+ |++++.|||.|||+++++.+..++.. .+.++|+|+||+-|+.|++..|.++
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~----------~~~kvlfLAPTKPLV~Qh~~~~~~v 81 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW----------FGGKVLFLAPTKPLVLQHAEFCRKV 81 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh----------cCCeEEEecCCchHHHHHHHHHHHH
Confidence 347899999888888877 99999999999999999999988875 2339999999999999999999998
Q ss_pred HhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCC
Q 038133 351 AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430 (671)
Q Consensus 351 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~ 430 (671)
+.-..-.++.++|.....+... ......|+|+||+.+.+.+..+.+++.++.+||||||||-........+..-.....
T Consensus 82 ~~ip~~~i~~ltGev~p~~R~~-~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 82 TGIPEDEIAALTGEVRPEEREE-LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred hCCChhheeeecCCCChHHHHH-HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 7655567888999888776654 445689999999999999999999999999999999999765544444433222221
Q ss_pred CCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHH---HH------------------hcC-----------------
Q 038133 431 SSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLA---RK------------------YLR----------------- 472 (671)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~---~~------------------~l~----------------- 472 (671)
. ...++++|||+..+.+.+. .. |+.
T Consensus 161 k-----------------~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ 223 (542)
T COG1111 161 K-----------------NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKE 223 (542)
T ss_pred c-----------------CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHH
Confidence 1 2458899999765544431 11 110
Q ss_pred -----------------CCeEEEECCCCcccc---ce----e--EE----------------------------------
Q 038133 473 -----------------NPVVVTIGTAGKATE---LI----S--QH---------------------------------- 492 (671)
Q Consensus 473 -----------------~p~~i~i~~~~~~~~---~i----~--~~---------------------------------- 492 (671)
+..++....+-...+ .. . ..
T Consensus 224 ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~ 303 (542)
T COG1111 224 IRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFY 303 (542)
T ss_pred HHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 111111111000000 00 0 00
Q ss_pred -------------------------------------EEEeccchhHHHHHHHHHHh----CCCcEEEEecChhhHHHHH
Q 038133 493 -------------------------------------VVMMKESEKFSRLQRLLDEL----GDKTAIVFVNTKKNADMVA 531 (671)
Q Consensus 493 -------------------------------------~~~~~~~~k~~~L~~ll~~~----~~~~iIVF~~~~~~~~~l~ 531 (671)
.....+..|+..+.+++.+. ++.++|||++.+.+++.+.
T Consensus 304 ~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~ 383 (542)
T COG1111 304 QYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIV 383 (542)
T ss_pred HHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHH
Confidence 00001122455566666543 3568999999999999999
Q ss_pred HHHHHcCCeEE-Eec--------CCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHh
Q 038133 532 KNLDKLGYRVT-TLH--------GGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRI 602 (671)
Q Consensus 532 ~~L~~~~~~v~-~lh--------g~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~Qri 602 (671)
+.|.+.+..+. .+- .||+|.++..+++.|+.|.++|||||+++++|||||.+++||+|++..|...++||.
T Consensus 384 ~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~ 463 (542)
T COG1111 384 NFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRK 463 (542)
T ss_pred HHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhh
Confidence 99999977664 332 479999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEEecCCCch
Q 038133 603 GRTGRAGKTGVATTFLTFHDTD 624 (671)
Q Consensus 603 GR~gR~G~~g~ai~~~~~~d~~ 624 (671)
|||||. +.|.++++++....+
T Consensus 464 GRTGR~-r~Grv~vLvt~gtrd 484 (542)
T COG1111 464 GRTGRK-RKGRVVVLVTEGTRD 484 (542)
T ss_pred CccccC-CCCeEEEEEecCchH
Confidence 999998 799999999988443
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.6e-37 Score=356.72 Aligned_cols=300 Identities=18% Similarity=0.246 Sum_probs=229.3
Q ss_pred HHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH-HHhhcCcEE
Q 038133 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK-FAHYLGIKV 358 (671)
Q Consensus 280 ~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k-~~~~~~i~v 358 (671)
+.+..+.+++++|++|+||||||++|.++++.... .+++++|++|||++|.|++..+.. +....|..+
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 45556667889999999999999999999886431 235899999999999999888754 444566777
Q ss_pred EEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccch-hhccCChH-HHHHHHHhCCCCCCCC
Q 038133 359 VSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR-MIDMGFEP-QVVGVLDAMPSSNLKP 436 (671)
Q Consensus 359 ~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~-~~~~~f~~-~i~~il~~l~~~~~~~ 436 (671)
...+++.+.. .....|+|+|||+|.+.+..+ ..++++++|||||+|. +++.++.- .+..++..++.
T Consensus 81 Gy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~----- 148 (812)
T PRK11664 81 GYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD----- 148 (812)
T ss_pred EEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc-----
Confidence 7777765422 234689999999999988764 4599999999999996 45544321 22334444443
Q ss_pred CCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHH-----HHHHHHHH
Q 038133 437 ENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFS-----RLQRLLDE 511 (671)
Q Consensus 437 ~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~-----~L~~ll~~ 511 (671)
..++++||||++.. .+ ..|+.++.++.+... ...+.+.+.......++. .+..++..
T Consensus 149 ------------~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~ 210 (812)
T PRK11664 149 ------------DLKLLIMSATLDND--RL-QQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQ 210 (812)
T ss_pred ------------cceEEEEecCCCHH--HH-HHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHh
Confidence 57899999999865 23 467765555544322 122444444444333332 34444433
Q ss_pred hCCCcEEEEecChhhHHHHHHHHHH---cCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE
Q 038133 512 LGDKTAIVFVNTKKNADMVAKNLDK---LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588 (671)
Q Consensus 512 ~~~~~iIVF~~~~~~~~~l~~~L~~---~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~ 588 (671)
..+.+|||||++..++.+++.|.. .++.+..+||++++++|..++..|.+|..+|||||+++++|||||+|++||+
T Consensus 211 -~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 211 -ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEE
Confidence 368999999999999999999987 4788999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------------------CHHHHHHHhcccCCCCCccEEEEEecCCC
Q 038133 589 YDMPG------------------NIEMYTHRIGRTGRAGKTGVATTFLTFHD 622 (671)
Q Consensus 589 ~d~p~------------------s~~~y~QriGR~gR~G~~g~ai~~~~~~d 622 (671)
++.+. |.++|.||.||+||. .+|.||.|++..+
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 87764 346899999999999 5999999998654
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.4e-37 Score=342.71 Aligned_cols=300 Identities=15% Similarity=0.195 Sum_probs=218.4
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 271 YKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 271 ~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
...|+++|.+|++.++.++++++++|||+|||.++...+...+.. ...++||||||++|+.||.+.+.++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~----------~~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN----------YEGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEECcHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999998765533222221 2348999999999999999999998
Q ss_pred HhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCC
Q 038133 351 AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430 (671)
Q Consensus 351 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~ 430 (671)
.......+..+.+|.... .+++|+|+||++|.+... ..+.++++||+||||++... .+..++..++
T Consensus 182 ~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~ 247 (501)
T PHA02558 182 RLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLD 247 (501)
T ss_pred ccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhh
Confidence 754444555666665432 357899999999976442 23678999999999999654 3456666654
Q ss_pred CCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHH--HHhcCCCeEEEECCCC-------------------ccc--c
Q 038133 431 SSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLA--RKYLRNPVVVTIGTAG-------------------KAT--E 487 (671)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~--~~~l~~p~~i~i~~~~-------------------~~~--~ 487 (671)
. .+++++||||++....... ..+++ |....+.... ... .
T Consensus 248 ~-----------------~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~ 309 (501)
T PHA02558 248 N-----------------CKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRV 309 (501)
T ss_pred c-----------------cceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhh
Confidence 3 4679999999865322111 11122 2211111000 000 0
Q ss_pred ce-----eEEEE-EeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHH
Q 038133 488 LI-----SQHVV-MMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559 (671)
Q Consensus 488 ~i-----~~~~~-~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~ 559 (671)
.+ ...+. ......+...+..++... .+.++||||+++++++.+++.|...+.++..+||++++++|..+++.
T Consensus 310 ~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~ 389 (501)
T PHA02558 310 KLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKI 389 (501)
T ss_pred hhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHH
Confidence 00 00000 011112223333333322 36789999999999999999999999999999999999999999999
Q ss_pred hhcCCCcEEEec-ccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCcc
Q 038133 560 FRTKRYNVLVAT-DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG 612 (671)
Q Consensus 560 F~~g~~~VLVaT-~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g 612 (671)
|++|...||||| +++++|+|+|++++||+++++.|...|+||+||++|.+..+
T Consensus 390 ~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 390 AEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred HhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 999999999998 89999999999999999999999999999999999987554
No 66
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5e-36 Score=358.05 Aligned_cols=305 Identities=21% Similarity=0.286 Sum_probs=229.9
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHH
Q 038133 265 AVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE 344 (671)
Q Consensus 265 ~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~ 344 (671)
.+.......|+|+|+.++|.++.|+|++++||||||||+ |++|++.++.. .++++|||+||++||.|++
T Consensus 70 ~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 70 FFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeCHHHHHHHHH
Confidence 343333347999999999999999999999999999997 66777666542 4789999999999999999
Q ss_pred HHHHHHHhhcCcEEE---EEECCCchHHHH---HHHhc-CCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc--
Q 038133 345 EETVKFAHYLGIKVV---SIVGGQSIEEQG---FRIRQ-GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID-- 415 (671)
Q Consensus 345 ~~~~k~~~~~~i~v~---~~~gg~~~~~~~---~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~-- 415 (671)
+.+.+++...++.+. .++|+.+..++. ..+.. +++|||+||++|.+.+.... . ++++|||||||+|++
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhcc
Confidence 999999998887654 467888766543 23344 49999999999988776411 1 899999999999998
Q ss_pred ---------cCChHH-HHHHHHhCCCCCCCCCCch-hh----hhhhhhcce--EEEEeccC-CHHHHHHHHHhcCCCeEE
Q 038133 416 ---------MGFEPQ-VVGVLDAMPSSNLKPENED-EE----LDEKRIYRT--TYMFSATM-PPAVERLARKYLRNPVVV 477 (671)
Q Consensus 416 ---------~~f~~~-i~~il~~l~~~~~~~~~~~-~~----~~~~~~~~q--~i~~SAT~-~~~~~~l~~~~l~~p~~i 477 (671)
+||.++ +..++..+...+....... .. +...+..+| +++||||+ |..+. ..+++++..+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccce
Confidence 788874 6666554432211110000 00 011112334 56799995 44333 2345666667
Q ss_pred EECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecCh---hhHHHHHHHHHHcCCeEEEecCCCCHHHHH
Q 038133 478 TIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTK---KNADMVAKNLDKLGYRVTTLHGGKSQEQRE 554 (671)
Q Consensus 478 ~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~---~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~ 554 (671)
.++........+.+.+..... +...|.+++... +.++||||+++ +.|+.++..|.+.|+.+..+||++++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~---- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK---- 365 (1171)
T ss_pred EecCccccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----
Confidence 777666666667766654332 356677888775 57899999999 99999999999999999999999973
Q ss_pred HHHHHhhcCCCcEEEe----cccccccCCCCC-CcEEEEcCCCC
Q 038133 555 ISLEGFRTKRYNVLVA----TDVAGRGIDIPD-VAHVINYDMPG 593 (671)
Q Consensus 555 ~~l~~F~~g~~~VLVa----T~~~~~GiDIp~-v~~VI~~d~p~ 593 (671)
.+++.|++|+++|||| |++++||||||+ |++|||||+|.
T Consensus 366 ~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 599999999999 89999999996
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.7e-36 Score=326.63 Aligned_cols=300 Identities=19% Similarity=0.207 Sum_probs=214.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchH-
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIE- 368 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~- 368 (671)
+++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++. -.+..++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---------~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~ 68 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---------QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKR 68 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---------CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHH
Confidence 58999999999999999999987643 3567999999999999999999888753 2344444433211
Q ss_pred ----------HHH-HHH------hcCCeEEEEcchHHHHHHhhcc----cc--cCCccEEEEcccchhhccCChHHHHHH
Q 038133 369 ----------EQG-FRI------RQGCEVVIATPGRLIDCLERRY----AV--LNQCNYVVLDEADRMIDMGFEPQVVGV 425 (671)
Q Consensus 369 ----------~~~-~~l------~~~~~IiI~Tp~~L~~~l~~~~----~~--l~~~~~vViDEah~~~~~~f~~~i~~i 425 (671)
... ... ...++|+|+||+.++..+.... .. .-..++|||||+|.+.+.++.. +..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~ 147 (358)
T TIGR01587 69 IKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAV 147 (358)
T ss_pred HhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHH
Confidence 000 000 1236799999999988776521 11 1123799999999998765544 5555
Q ss_pred HHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEe--ccchhHH
Q 038133 426 LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM--KESEKFS 503 (671)
Q Consensus 426 l~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~--~~~~k~~ 503 (671)
+..++.. ..|+++||||+|..+..++..+...+......... ......+.+... ....+..
T Consensus 148 l~~l~~~----------------~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 210 (358)
T TIGR01587 148 LEVLKDN----------------DVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE-ERRFERHRFIKIESDKVGEIS 210 (358)
T ss_pred HHHHHHc----------------CCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc-ccccccccceeeccccccCHH
Confidence 5554321 46899999999987777766654432221111110 000111222111 2234555
Q ss_pred HHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHcCC--eEEEecCCCCHHHHHHH----HHHhhcCCCcEEEecccccc
Q 038133 504 RLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLGY--RVTTLHGGKSQEQREIS----LEGFRTKRYNVLVATDVAGR 576 (671)
Q Consensus 504 ~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~~--~v~~lhg~~~~~~R~~~----l~~F~~g~~~VLVaT~~~~~ 576 (671)
.+..++... .++++|||||+++.|+.++..|.+.+. .+..+||++++.+|..+ ++.|++|...|||||+++++
T Consensus 211 ~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~ 290 (358)
T TIGR01587 211 SLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEA 290 (358)
T ss_pred HHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhc
Confidence 666666543 478999999999999999999988765 59999999999999764 88999999999999999999
Q ss_pred cCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCc----cEEEEEecCCC
Q 038133 577 GIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT----GVATTFLTFHD 622 (671)
Q Consensus 577 GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~----g~ai~~~~~~d 622 (671)
||||+ +++||++..| +.+|+||+||+||.|+. |.+++|....+
T Consensus 291 GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 291 SLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred eeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 99995 8899998776 88999999999999854 36777766544
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=4.1e-36 Score=315.03 Aligned_cols=338 Identities=22% Similarity=0.294 Sum_probs=276.7
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEE
Q 038133 253 WAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAV 331 (671)
Q Consensus 253 f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vL 331 (671)
.+++.+|+++...+...|+..+.|.|.-|+...| .|.|.+++.+|+||||++.-++-+..++. .|.+.|
T Consensus 196 vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----------~g~Kml 265 (830)
T COG1202 196 VDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----------GGKKML 265 (830)
T ss_pred ccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----------CCCeEE
Confidence 4677999999999999999999999999998876 89999999999999999998888777763 689999
Q ss_pred EEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHH----HHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEE
Q 038133 332 VMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQG----FRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVL 407 (671)
Q Consensus 332 il~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~----~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vVi 407 (671)
+|||..+||+|-++.|+.....+|+.+..-+|........ ......+||||+|++-+-.++... ..+.+++.|||
T Consensus 266 fLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVI 344 (830)
T COG1202 266 FLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVI 344 (830)
T ss_pred EEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEe
Confidence 9999999999999999999999999998888866544432 122336899999999986665554 66999999999
Q ss_pred cccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCcccc
Q 038133 408 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATE 487 (671)
Q Consensus 408 DEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~ 487 (671)
||+|.+-+...++.+.+++..+..... ..|.+.+|||...+ +.++..+--.+ +.+... +-
T Consensus 345 DEiHtL~deERG~RLdGLI~RLr~l~~--------------~AQ~i~LSATVgNp-~elA~~l~a~l-V~y~~R----PV 404 (830)
T COG1202 345 DEIHTLEDEERGPRLDGLIGRLRYLFP--------------GAQFIYLSATVGNP-EELAKKLGAKL-VLYDER----PV 404 (830)
T ss_pred eeeeeccchhcccchhhHHHHHHHhCC--------------CCeEEEEEeecCCh-HHHHHHhCCee-EeecCC----CC
Confidence 999999888888888888777654221 47999999999766 44555543333 222221 22
Q ss_pred ceeEEEEEe-ccchhHHHHHHHHHHh--------CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHH
Q 038133 488 LISQHVVMM-KESEKFSRLQRLLDEL--------GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558 (671)
Q Consensus 488 ~i~~~~~~~-~~~~k~~~L~~ll~~~--------~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~ 558 (671)
.+..++.+. ++..|.+.+..+.+.. -.+++|||.+|+..|..+++.|...|+++..+|+|++..+|..+..
T Consensus 405 plErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~ 484 (830)
T COG1202 405 PLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVER 484 (830)
T ss_pred ChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHH
Confidence 344455555 5888999888888643 2679999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcEEEecccccccCCCCCCcEEE---EcCCC-CCHHHHHHHhcccCCCC--CccEEEEEecCC
Q 038133 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVI---NYDMP-GNIEMYTHRIGRTGRAG--KTGVATTFLTFH 621 (671)
Q Consensus 559 ~F~~g~~~VLVaT~~~~~GiDIp~v~~VI---~~d~p-~s~~~y~QriGR~gR~G--~~g~ai~~~~~~ 621 (671)
.|.++++.++|+|.+++.|+|+|.-.+|+ -.+.. -|+..|.|+.||+||.+ ..|++|+++.+.
T Consensus 485 ~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 485 AFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999999999999999999755443 22333 38999999999999987 459999998764
No 69
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=7.2e-37 Score=310.61 Aligned_cols=296 Identities=26% Similarity=0.495 Sum_probs=240.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhc---CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCc
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYL---GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQC 402 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~---~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~ 402 (671)
+.|.++|+-|+++||.|.+..+.+|-..+ .++...+.||...++|...+.+|.+|+|+||++|.+.++...+.+++|
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 45889999999999999999877776554 356668899999999999999999999999999999999999999999
Q ss_pred cEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCH-HHHHHHHHhcCCCeEEEECC
Q 038133 403 NYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP-AVERLARKYLRNPVVVTIGT 481 (671)
Q Consensus 403 ~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~-~~~~l~~~~l~~p~~i~i~~ 481 (671)
.++|+||++-++..++.+.|..+..++|.... ..+..|.++.|||+.. .+..+....+.-|.-+....
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~ts-----------dg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkg 433 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTS-----------DGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKG 433 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhc-----------CCcccccceeeeEEeEEEeeehhhhhccCceeEeccc
Confidence 99999999999999999999999888876321 2235788999999853 34455556666676666665
Q ss_pred CCccccceeEEEEEecc--ch----------------------------hHHHHHHH---------HHHhCCCcEEEEec
Q 038133 482 AGKATELISQHVVMMKE--SE----------------------------KFSRLQRL---------LDELGDKTAIVFVN 522 (671)
Q Consensus 482 ~~~~~~~i~~~~~~~~~--~~----------------------------k~~~L~~l---------l~~~~~~~iIVF~~ 522 (671)
.....+.+.+.+..+.. .. ....-..| ++...-.++||||.
T Consensus 434 eD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcr 513 (725)
T KOG0349|consen 434 EDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCR 513 (725)
T ss_pred ccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEe
Confidence 55555544444332211 11 11111222 22334567999999
Q ss_pred ChhhHHHHHHHHHHc---CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHH
Q 038133 523 TKKNADMVAKNLDKL---GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYT 599 (671)
Q Consensus 523 ~~~~~~~l~~~L~~~---~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~ 599 (671)
++..|+.|..++.+. .+.++++||+..+.+|..-++.|+.++.++||||+++++||||.++-++||...|.....|+
T Consensus 514 tk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyv 593 (725)
T KOG0349|consen 514 TKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYV 593 (725)
T ss_pred ccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhh
Confidence 999999999999887 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCccEEEEEecCCCchHHHHHHHH
Q 038133 600 HRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQM 632 (671)
Q Consensus 600 QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~ 632 (671)
|||||+||+.+-|.||+++......+.|.....
T Consensus 594 hrigrvgraermglaislvat~~ekvwyh~c~s 626 (725)
T KOG0349|consen 594 HRIGRVGRAERMGLAISLVATVPEKVWYHWCKS 626 (725)
T ss_pred hhhhccchhhhcceeEEEeeccchheeehhhhc
Confidence 999999999999999999988777777775544
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.5e-34 Score=339.20 Aligned_cols=322 Identities=24% Similarity=0.296 Sum_probs=241.9
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
.+|++||.+++..++.+ ++|+++|||+|||+++++++...+.. .+.++||||||++|+.|+...+.+++
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 47899999999988887 99999999999999999988887632 56789999999999999999999886
Q ss_pred hhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCC
Q 038133 352 HYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 431 (671)
Q Consensus 352 ~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~ 431 (671)
...+..++.++|+.+..+. ..+..+++|+|+||+.+...+......+.++++|||||||++........+...+.....
T Consensus 83 ~~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 83 NIPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred CCCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 5445578888888776543 445567899999999998887777777889999999999998754433333322222111
Q ss_pred CCCCCCCchhhhhhhhhcceEEEEeccCCHHHH---HHHHHhc------------------CCCeEEEEC--CCCc----
Q 038133 432 SNLKPENEDEELDEKRIYRTTYMFSATMPPAVE---RLARKYL------------------RNPVVVTIG--TAGK---- 484 (671)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~---~l~~~~l------------------~~p~~i~i~--~~~~---- 484 (671)
...+++||||+..... .++..+. ..+....+. ....
T Consensus 162 -----------------~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i 224 (773)
T PRK13766 162 -----------------NPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEI 224 (773)
T ss_pred -----------------CCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHH
Confidence 3468999999743221 1122111 100000000 0000
Q ss_pred -----------------------ccc------------ceeEE-------------------------------------
Q 038133 485 -----------------------ATE------------LISQH------------------------------------- 492 (671)
Q Consensus 485 -----------------------~~~------------~i~~~------------------------------------- 492 (671)
... .+...
T Consensus 225 ~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 304 (773)
T PRK13766 225 RDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALR 304 (773)
T ss_pred HHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 000 00000
Q ss_pred -----------------------------------EEEeccchhHHHHHHHHHH----hCCCcEEEEecChhhHHHHHHH
Q 038133 493 -----------------------------------VVMMKESEKFSRLQRLLDE----LGDKTAIVFVNTKKNADMVAKN 533 (671)
Q Consensus 493 -----------------------------------~~~~~~~~k~~~L~~ll~~----~~~~~iIVF~~~~~~~~~l~~~ 533 (671)
........|+..|.++|.. ..+.++||||++..+|+.|++.
T Consensus 305 ~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~ 384 (773)
T PRK13766 305 RYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDL 384 (773)
T ss_pred HHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHH
Confidence 0001223466677777765 3578999999999999999999
Q ss_pred HHHcCCeEEEecCC--------CCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhccc
Q 038133 534 LDKLGYRVTTLHGG--------KSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRT 605 (671)
Q Consensus 534 L~~~~~~v~~lhg~--------~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~ 605 (671)
|...++.+..+||. |++.+|..++..|++|.++|||||+++++|+|+|++++||+||+|++...|+||+||+
T Consensus 385 L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~ 464 (773)
T PRK13766 385 LEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRT 464 (773)
T ss_pred HHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 99999999999886 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCCCc
Q 038133 606 GRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 606 gR~G~~g~ai~~~~~~d~ 623 (671)
||.|. |.+|++++....
T Consensus 465 gR~~~-~~v~~l~~~~t~ 481 (773)
T PRK13766 465 GRQEE-GRVVVLIAKGTR 481 (773)
T ss_pred CcCCC-CEEEEEEeCCCh
Confidence 99874 888988886554
No 71
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.5e-34 Score=312.82 Aligned_cols=332 Identities=21% Similarity=0.273 Sum_probs=259.7
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 262 LLRAVERVGYKNPSPIQMAAIPLGLQQ------RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 262 i~~~i~~~g~~~p~~~Q~~ai~~il~~------rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
+.+.+..+.| .+|..|.+++.-|... -+.+++|++|||||++++++|+..+. .|.++..+||
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-----------~G~Q~ALMAP 319 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-----------AGYQAALMAP 319 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-----------cCCeeEEecc
Confidence 3445688888 8999999999988843 36899999999999999999999884 6999999999
Q ss_pred chhhHHHHHHHHHHHHhhcCcEEEEEECCCchHH---HHHHHhcC-CeEEEEcchHHHHHHhhcccccCCccEEEEcccc
Q 038133 336 TRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE---QGFRIRQG-CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 411 (671)
Q Consensus 336 tr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~---~~~~l~~~-~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah 411 (671)
|-.||.|++..+.+++.++|+++..++|...... ....+.+| .+|||||+..+.+-++ +.++++||+||=|
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~-----F~~LgLVIiDEQH 394 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE-----FHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee-----ecceeEEEEeccc
Confidence 9999999999999999999999999999776443 44455566 9999999988876655 9999999999999
Q ss_pred hhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeE
Q 038133 412 RMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQ 491 (671)
Q Consensus 412 ~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~ 491 (671)
|+ +-.-+..+..-... ...+++||||+.|... +-....+-.+..+.........|..
T Consensus 395 RF-----GV~QR~~L~~KG~~----------------~Ph~LvMTATPIPRTL--Alt~fgDldvS~IdElP~GRkpI~T 451 (677)
T COG1200 395 RF-----GVHQRLALREKGEQ----------------NPHVLVMTATPIPRTL--ALTAFGDLDVSIIDELPPGRKPITT 451 (677)
T ss_pred cc-----cHHHHHHHHHhCCC----------------CCcEEEEeCCCchHHH--HHHHhccccchhhccCCCCCCceEE
Confidence 97 22222222221110 2458999999988654 5566666666666665555555655
Q ss_pred EEEEeccchhHHHHHHHHH-Hh-CCCcEEEEecChhh--------HHHHHHHHHHc--CCeEEEecCCCCHHHHHHHHHH
Q 038133 492 HVVMMKESEKFSRLQRLLD-EL-GDKTAIVFVNTKKN--------ADMVAKNLDKL--GYRVTTLHGGKSQEQREISLEG 559 (671)
Q Consensus 492 ~~~~~~~~~k~~~L~~ll~-~~-~~~~iIVF~~~~~~--------~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~l~~ 559 (671)
.+... .+...+.+.+. +. .+.++.+.|+-+++ +..++..|+.. ++++..+||.|++++++.+|..
T Consensus 452 ~~i~~---~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~ 528 (677)
T COG1200 452 VVIPH---ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEA 528 (677)
T ss_pred EEecc---ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHH
Confidence 54433 22223333332 22 48899999988765 45666677644 6789999999999999999999
Q ss_pred hhcCCCcEEEecccccccCCCCCCcEEEEcCCCC-CHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 560 F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
|++|+++|||||.+++.|||+||++++|..+.-. ..++..|..||+||.+..++|++++.+...+....-.+.+.++
T Consensus 529 Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t 606 (677)
T COG1200 529 FKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRET 606 (677)
T ss_pred HHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhc
Confidence 9999999999999999999999999999888754 7899999999999999999999999988766655555555554
No 72
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=7.6e-35 Score=333.38 Aligned_cols=336 Identities=26% Similarity=0.313 Sum_probs=258.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 257 ~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
.+++.+.+.+...|+.++.|.|+.++..++ .++|+|+|+|||||||+++++.++..+.+ .+.++||+||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~----------~~~k~vYivP 84 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE----------GGGKVVYIVP 84 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh----------cCCcEEEEeC
Confidence 467788888888899888888888887666 55999999999999999999999998874 3688999999
Q ss_pred chhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc
Q 038133 336 TRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 336 tr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~ 415 (671)
+++||.|.+++++ ....+|++|...+|+...... ...+++|||+||+.+-..+.+....+..+++|||||+|.+.+
T Consensus 85 lkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 85 LKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred hHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCC
Confidence 9999999999999 556799999999999875442 235799999999999766666666788999999999999888
Q ss_pred cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCc--cccceeEEE
Q 038133 416 MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK--ATELISQHV 493 (671)
Q Consensus 416 ~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~--~~~~i~~~~ 493 (671)
...++.+..|...++..+. ..+++++|||+|.. ..++...-.++. ...-.... ......+.+
T Consensus 161 ~~RG~~lE~iv~r~~~~~~--------------~~rivgLSATlpN~-~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~ 224 (766)
T COG1204 161 RTRGPVLESIVARMRRLNE--------------LIRIVGLSATLPNA-EEVADWLNAKLV-ESDWRPVPLRRGVPYVGAF 224 (766)
T ss_pred cccCceehhHHHHHHhhCc--------------ceEEEEEeeecCCH-HHHHHHhCCccc-ccCCCCcccccCCccceEE
Confidence 8788888888887766432 36899999999865 555554444433 22222211 122233333
Q ss_pred EEeccchh------HHHHHH-HHHHh-CCCcEEEEecChhhHHHHHHHHHHc----------------------------
Q 038133 494 VMMKESEK------FSRLQR-LLDEL-GDKTAIVFVNTKKNADMVAKNLDKL---------------------------- 537 (671)
Q Consensus 494 ~~~~~~~k------~~~L~~-ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~---------------------------- 537 (671)
.......| ...+.. ++... .++++||||++++.+...++.|...
T Consensus 225 ~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 304 (766)
T COG1204 225 LGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTS 304 (766)
T ss_pred EEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhcccccccccccccccc
Confidence 33332221 222222 23332 3889999999999999999888620
Q ss_pred ---------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEE----EcC-----CCCCHHHHH
Q 038133 538 ---------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI----NYD-----MPGNIEMYT 599 (671)
Q Consensus 538 ---------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI----~~d-----~p~s~~~y~ 599 (671)
-..+..+|+|++.++|..+.+.|+.|.++|||||+.++.|+|+|.-.+|| .|+ .+-++.++.
T Consensus 305 ~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~ 384 (766)
T COG1204 305 EDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVL 384 (766)
T ss_pred chHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHh
Confidence 12467899999999999999999999999999999999999999977777 566 455789999
Q ss_pred HHhcccCCCCCc--cEEEEEecCCC
Q 038133 600 HRIGRTGRAGKT--GVATTFLTFHD 622 (671)
Q Consensus 600 QriGR~gR~G~~--g~ai~~~~~~d 622 (671)
|++|||||.|-+ |.++++.+..+
T Consensus 385 QM~GRAGRPg~d~~G~~~i~~~~~~ 409 (766)
T COG1204 385 QMAGRAGRPGYDDYGEAIILATSHD 409 (766)
T ss_pred hccCcCCCCCcCCCCcEEEEecCcc
Confidence 999999999854 66666664443
No 73
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=321.53 Aligned_cols=371 Identities=21% Similarity=0.300 Sum_probs=282.1
Q ss_pred cCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
++|..+..+|..++|.++ ++-|+|||||||||||-+|++.+|..+.... -......++-+++||+|+++||..+.+.|
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-EQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-cccccccCCceEEEEechHHHHHHHHHHH
Confidence 578889999999999998 5679999999999999999999999987511 11122346789999999999999999999
Q ss_pred HHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc----ccCCccEEEEcccchhhccCChHHHH
Q 038133 348 VKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA----VLNQCNYVVLDEADRMIDMGFEPQVV 423 (671)
Q Consensus 348 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~----~l~~~~~vViDEah~~~~~~f~~~i~ 423 (671)
.+-+..+|+.|..++|........ ...|+|||+||+.. |.+.++.. .++.+.+|||||+|.+ ....++.+.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvlE 259 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVLE 259 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhh-cCcccchHH
Confidence 999999999999999998765543 34699999999995 77766543 4678899999999965 445667777
Q ss_pred HHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCC-e-EEEECCCCccccceeEEEEEeccc--
Q 038133 424 GVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNP-V-VVTIGTAGKATELISQHVVMMKES-- 499 (671)
Q Consensus 424 ~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p-~-~i~i~~~~~~~~~i~~~~~~~~~~-- 499 (671)
.|+..+...- ...-....++++|||+|. .+.++..+-.+| . +..++.... +-.+.+.+..+...
T Consensus 260 tiVaRtlr~v----------essqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yR-PvpL~~~~iG~k~~~~ 327 (1230)
T KOG0952|consen 260 TIVARTLRLV----------ESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYR-PVPLTQGFIGIKGKKN 327 (1230)
T ss_pred HHHHHHHHHH----------HhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeeccccc-ccceeeeEEeeecccc
Confidence 6665553100 001114679999999975 455555443332 2 222222222 23344555444332
Q ss_pred ---------hhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc-----------------------CCeEEEecCC
Q 038133 500 ---------EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL-----------------------GYRVTTLHGG 547 (671)
Q Consensus 500 ---------~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~-----------------------~~~v~~lhg~ 547 (671)
.....+.+.+.+ +.+++|||.++...-..|+.|.+. .....++|+|
T Consensus 328 ~~~~~~~d~~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAG 405 (1230)
T KOG0952|consen 328 RQQKKNIDEVCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAG 405 (1230)
T ss_pred hhhhhhHHHHHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccc
Confidence 123334444443 899999999999988888888542 1346789999
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEE----EcCCCC------CHHHHHHHhcccCCCC--CccEEE
Q 038133 548 KSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI----NYDMPG------NIEMYTHRIGRTGRAG--KTGVAT 615 (671)
Q Consensus 548 ~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI----~~d~p~------s~~~y~QriGR~gR~G--~~g~ai 615 (671)
|.-.+|..+...|..|.++||+||..++.|+|+|.-.++| .||... ++.+..|..|||||.. ..|.++
T Consensus 406 m~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~gi 485 (1230)
T KOG0952|consen 406 MLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGI 485 (1230)
T ss_pred cchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEE
Confidence 9999999999999999999999999999999999876666 455433 6788999999999975 679999
Q ss_pred EEecCCCchHHHHHHHHHHhcCCCCChhHHhchhccCCCCCCCC
Q 038133 616 TFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPD 659 (671)
Q Consensus 616 ~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~~~~~~~~~g~i~~ 659 (671)
.+.+.+..+.+..|..--...+|.+-+.|.+|.+|++..|||.+
T Consensus 486 IiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~ 529 (1230)
T KOG0952|consen 486 IITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTN 529 (1230)
T ss_pred EEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeec
Confidence 99888888888777665555578889999999999999999976
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=3.7e-33 Score=298.71 Aligned_cols=289 Identities=16% Similarity=0.238 Sum_probs=203.5
Q ss_pred HHHHHHHHHhCCCc--EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhc
Q 038133 277 IQMAAIPLGLQQRD--VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL 354 (671)
Q Consensus 277 ~Q~~ai~~il~~rd--~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~ 354 (671)
+|.++++.+..+.+ ++++||||||||.+|++|++. .+.+++|++|+++|+.|+++.+..++..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~--------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH--------------GENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH--------------cCCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 59999999998874 788999999999999999874 23468999999999999999999988644
Q ss_pred ----CcEEEEEECCCchH--HHH------------------HHHhcCCeEEEEcchHHHHHHhhccc--------ccCCc
Q 038133 355 ----GIKVVSIVGGQSIE--EQG------------------FRIRQGCEVVIATPGRLIDCLERRYA--------VLNQC 402 (671)
Q Consensus 355 ----~i~v~~~~gg~~~~--~~~------------------~~l~~~~~IiI~Tp~~L~~~l~~~~~--------~l~~~ 402 (671)
++.+..+.|..... ... ......+.|+++||+.|..++...+. .+..+
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 55666666652211 000 00123578999999999765543211 25789
Q ss_pred cEEEEcccchhhccCChH-----HHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHh--cCCCe
Q 038133 403 NYVVLDEADRMIDMGFEP-----QVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKY--LRNPV 475 (671)
Q Consensus 403 ~~vViDEah~~~~~~f~~-----~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~--l~~p~ 475 (671)
++|||||+|.+...+... ....++..... ..+++++|||+++.+...+... ++.+.
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~-----------------~~~~i~lSAT~~~~~~~~l~~~~~~~~~~ 209 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC-----------------RRKFVFLSATPDPALILRLQNAKQAGVKI 209 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhhc-----------------CCcEEEEecCCCHHHHHHHHhccccCcee
Confidence 999999999875433211 11122221111 3579999999999888777765 56665
Q ss_pred EEEECCCCcc------------------ccceeEEEEEeccchhHHHHHHHHH-------HhCCCcEEEEecChhhHHHH
Q 038133 476 VVTIGTAGKA------------------TELISQHVVMMKESEKFSRLQRLLD-------ELGDKTAIVFVNTKKNADMV 530 (671)
Q Consensus 476 ~i~i~~~~~~------------------~~~i~~~~~~~~~~~k~~~L~~ll~-------~~~~~~iIVF~~~~~~~~~l 530 (671)
.+..+..... ...+...+.. ....+...+..++. ...++++|||||++..++.+
T Consensus 210 ~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l 288 (357)
T TIGR03158 210 APIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRL 288 (357)
T ss_pred eeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHH
Confidence 5444441000 0123333322 22333333333222 22467899999999999999
Q ss_pred HHHHHHcC--CeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccC
Q 038133 531 AKNLDKLG--YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTG 606 (671)
Q Consensus 531 ~~~L~~~~--~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~g 606 (671)
+..|.+.+ +.+..+||.+++.+|+.+ ++.+|||||+++++|||+|.+ +|| ++ |.++..|+||+||+|
T Consensus 289 ~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 289 SDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99999864 578899999999998765 378999999999999999987 565 45 889999999999997
No 75
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.5e-33 Score=308.19 Aligned_cols=320 Identities=26% Similarity=0.262 Sum_probs=229.9
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 270 GYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 270 g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
..-.++.||.+.+...| |+|+|+++|||+|||++++..|+.|+...| ..+||++|||+-|+.|....+..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---------~~KiVF~aP~~pLv~QQ~a~~~~ 128 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---------KGKVVFLAPTRPLVNQQIACFSI 128 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC---------cceEEEeeCCchHHHHHHHHHhh
Confidence 34479999999999999 999999999999999999999999998754 48899999999999998877777
Q ss_pred HHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccc-cCCccEEEEcccchhhccCChHHHH-HHHH
Q 038133 350 FAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFEPQVV-GVLD 427 (671)
Q Consensus 350 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~-l~~~~~vViDEah~~~~~~f~~~i~-~il~ 427 (671)
++.+ ..+....||.........+...++|+|+||+.|.+.|...... |+.+.++||||||+-....-+..+. .++.
T Consensus 129 ~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~ 206 (746)
T KOG0354|consen 129 YLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLD 206 (746)
T ss_pred ccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHH
Confidence 6654 4555666664433333356677999999999999988776543 6899999999999976554444443 3332
Q ss_pred hCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHH--------------------------------------
Q 038133 428 AMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARK-------------------------------------- 469 (671)
Q Consensus 428 ~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~-------------------------------------- 469 (671)
. +.. ..|++++|||+....+....-
T Consensus 207 ~-k~~----------------~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~ 269 (746)
T KOG0354|consen 207 L-KNQ----------------GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCER 269 (746)
T ss_pred h-hhc----------------cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhh
Confidence 2 221 238999999987543332110
Q ss_pred ------------hcC-----------CCeEE------EECCCCccccceeEE--E------------------E------
Q 038133 470 ------------YLR-----------NPVVV------TIGTAGKATELISQH--V------------------V------ 494 (671)
Q Consensus 470 ------------~l~-----------~p~~i------~i~~~~~~~~~i~~~--~------------------~------ 494 (671)
|+. +...+ .........-.-.+. + .
T Consensus 270 ~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~ 349 (746)
T KOG0354|consen 270 DIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALD 349 (746)
T ss_pred hhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHh
Confidence 000 00000 000000000000000 0 0
Q ss_pred ----------------------------------------EeccchhHHHHHHHHHHh----CCCcEEEEecChhhHHHH
Q 038133 495 ----------------------------------------MMKESEKFSRLQRLLDEL----GDKTAIVFVNTKKNADMV 530 (671)
Q Consensus 495 ----------------------------------------~~~~~~k~~~L~~ll~~~----~~~~iIVF~~~~~~~~~l 530 (671)
...+..|+..|.+++... +...+||||.++..++.|
T Consensus 350 ~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l 429 (746)
T KOG0354|consen 350 YLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALAL 429 (746)
T ss_pred hhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHH
Confidence 001122445555555432 356799999999999999
Q ss_pred HHHHHHc---CCeEEEec--------CCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHH
Q 038133 531 AKNLDKL---GYRVTTLH--------GGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYT 599 (671)
Q Consensus 531 ~~~L~~~---~~~v~~lh--------g~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~ 599 (671)
.+.|... +++...+- .+|++.++..+++.|++|.++|||||+++++||||+.|++||.||...|+...+
T Consensus 430 ~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmI 509 (746)
T KOG0354|consen 430 KKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMV 509 (746)
T ss_pred HHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHH
Confidence 9999842 33433333 389999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCccEEEEEecC
Q 038133 600 HRIGRTGRAGKTGVATTFLTF 620 (671)
Q Consensus 600 QriGR~gR~G~~g~ai~~~~~ 620 (671)
||+|| ||+ +.|.|+++++.
T Consensus 510 QrrGR-gRa-~ns~~vll~t~ 528 (746)
T KOG0354|consen 510 QRRGR-GRA-RNSKCVLLTTG 528 (746)
T ss_pred HHhcc-ccc-cCCeEEEEEcc
Confidence 99999 999 57888888883
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.9e-33 Score=312.49 Aligned_cols=317 Identities=17% Similarity=0.220 Sum_probs=223.4
Q ss_pred CCcHHHHHHHHHHhC-C--CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQ-Q--RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~-~--rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
.++|||.+|+..+.. + +..++++|||+|||++.+..+.. + +..+|||||+.+|+.||.+++.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-------------~k~tLILvps~~Lv~QW~~ef~~ 320 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-------------KKSCLVLCTSAVSVEQWKQQFKM 320 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 689999999999884 3 47899999999999998765532 2 35699999999999999999999
Q ss_pred HHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc--------ccccCCccEEEEcccchhhccCChHH
Q 038133 350 FAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR--------YAVLNQCNYVVLDEADRMIDMGFEPQ 421 (671)
Q Consensus 350 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~--------~~~l~~~~~vViDEah~~~~~~f~~~ 421 (671)
++...+..+..++|+.... ....+.|+|+|++.+.....+. .+.-..+++||+||||++.. ..
T Consensus 321 ~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~ 391 (732)
T TIGR00603 321 WSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AM 391 (732)
T ss_pred hcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HH
Confidence 8654445666666654321 1234789999999875432211 11224689999999999854 33
Q ss_pred HHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHH--HHHhcCCCeEEEECCCCc-----ccc-ceeEEE
Q 038133 422 VVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERL--ARKYLRNPVVVTIGTAGK-----ATE-LISQHV 493 (671)
Q Consensus 422 i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l--~~~~l~~p~~i~i~~~~~-----~~~-~i~~~~ 493 (671)
+..++..+.. ...+++|||+....... ...++ .|.......... ... ......
T Consensus 392 fr~il~~l~a------------------~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~ 452 (732)
T TIGR00603 392 FRRVLTIVQA------------------HCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVW 452 (732)
T ss_pred HHHHHHhcCc------------------CcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEE
Confidence 4455555532 34799999986432211 22222 232222211000 000 000000
Q ss_pred ---------------------EEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCH
Q 038133 494 ---------------------VMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQ 550 (671)
Q Consensus 494 ---------------------~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~ 550 (671)
.......|+..+..++... .+.++||||++...+..++..|. +..+||++++
T Consensus 453 v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~ 527 (732)
T TIGR00603 453 CPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQ 527 (732)
T ss_pred ecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCH
Confidence 0112234566666677654 57899999999999999988772 4668999999
Q ss_pred HHHHHHHHHhhcC-CCcEEEecccccccCCCCCCcEEEEcCCC-CCHHHHHHHhcccCCCCCccEE-------EEEecCC
Q 038133 551 EQREISLEGFRTK-RYNVLVATDVAGRGIDIPDVAHVINYDMP-GNIEMYTHRIGRTGRAGKTGVA-------TTFLTFH 621 (671)
Q Consensus 551 ~~R~~~l~~F~~g-~~~VLVaT~~~~~GiDIp~v~~VI~~d~p-~s~~~y~QriGR~gR~G~~g~a-------i~~~~~~ 621 (671)
.+|..+++.|++| .+++||+|+++++|||+|++++||+++.| .|..+|+||+||++|.+..|.+ |+|++.+
T Consensus 528 ~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 528 QERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred HHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 9999999999875 78999999999999999999999999987 4999999999999999866654 8899887
Q ss_pred CchHHHH--HHHHHHhc
Q 038133 622 DTDVFYD--LKQMLIQS 636 (671)
Q Consensus 622 d~~~~~~--l~~~l~~~ 636 (671)
..+..+. -.++|...
T Consensus 608 T~E~~~s~~Rq~fl~~q 624 (732)
T TIGR00603 608 TQEMYYSTKRQRFLVDQ 624 (732)
T ss_pred chHHHHHHHHHHHHHHC
Confidence 7665553 44566554
No 77
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.7e-33 Score=321.42 Aligned_cols=332 Identities=23% Similarity=0.288 Sum_probs=258.0
Q ss_pred HHHH-HHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 262 LLRA-VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 262 i~~~-i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
.... ...+|+..++|-|.+||..++.|+|+++.+|||+||++||.+|++-+ ++..|||.|..+|.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------------~gitvVISPL~SLm 317 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------------GGVTVVISPLISLM 317 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------------CCceEEeccHHHHH
Confidence 4443 45679999999999999999999999999999999999999999653 55899999999998
Q ss_pred HHHHHHHHHHHhhcCcEEEEEECCCchHHHHH---HHhc---CCeEEEEcchHHHHHH--hhcccccCC---ccEEEEcc
Q 038133 341 QQIEEETVKFAHYLGIKVVSIVGGQSIEEQGF---RIRQ---GCEVVIATPGRLIDCL--ERRYAVLNQ---CNYVVLDE 409 (671)
Q Consensus 341 ~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~---~~~IiI~Tp~~L~~~l--~~~~~~l~~---~~~vViDE 409 (671)
+. .+..+ ...+|....+.++....++.. .+.. .++|++.||+.+...- ......+.. +.++||||
T Consensus 318 ~D---Qv~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDE 393 (941)
T KOG0351|consen 318 QD---QVTHL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDE 393 (941)
T ss_pred HH---HHHhh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecH
Confidence 74 44454 446899999999988764432 2333 4899999999985322 222223444 88999999
Q ss_pred cchhhccC--ChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCcccc
Q 038133 410 ADRMIDMG--FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATE 487 (671)
Q Consensus 410 ah~~~~~~--f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~ 487 (671)
||+...|| |++.+..+........ ...++.+|||.++.+..-+...|+-+....+... ....
T Consensus 394 AHCVSqWgHdFRp~Yk~l~~l~~~~~---------------~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s-fnR~ 457 (941)
T KOG0351|consen 394 AHCVSQWGHDFRPSYKRLGLLRIRFP---------------GVPFIALTATATERVREDVIRSLGLRNPELFKSS-FNRP 457 (941)
T ss_pred HHHhhhhcccccHHHHHHHHHHhhCC---------------CCCeEEeehhccHHHHHHHHHHhCCCCcceeccc-CCCC
Confidence 99999987 8888776644333221 2469999999999888776666553322222222 1223
Q ss_pred ceeEEEEEec-cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCc
Q 038133 488 LISQHVVMMK-ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN 566 (671)
Q Consensus 488 ~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~ 566 (671)
++...|..-. ...-...+..+-...+...+||||.++..|+.++..|...++.+..||+||+..+|+.+...|..++++
T Consensus 458 NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~ 537 (941)
T KOG0351|consen 458 NLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIR 537 (941)
T ss_pred CceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCe
Confidence 3333333332 122223333333344688999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHH
Q 038133 567 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFY 627 (671)
Q Consensus 567 VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~ 627 (671)
|+|||=++|+|||-|+|..||||.+|.|++.|.|-+|||||.|....|++|+...|..-+.
T Consensus 538 VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~ 598 (941)
T KOG0351|consen 538 VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELR 598 (941)
T ss_pred EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998654443
No 78
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.3e-32 Score=323.54 Aligned_cols=298 Identities=23% Similarity=0.325 Sum_probs=207.7
Q ss_pred HHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecc----hhhHHHHHHHHHHHHhhc
Q 038133 279 MAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPT----RELAQQIEEETVKFAHYL 354 (671)
Q Consensus 279 ~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Pt----r~La~Qi~~~~~k~~~~~ 354 (671)
.+.+..+..++.+|++|+||||||+. +|.+.+-.. .+....+++..|. ++||.|+.+++.. .+
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g--------~g~~g~I~~TQPRRlAArsLA~RVA~El~~---~l 146 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELG--------RGVKGLIGHTQPRRLAARTVANRIAEELET---EL 146 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcC--------CCCCCceeeCCCcHHHHHHHHHHHHHHHhh---hh
Confidence 34555666777789999999999984 664433211 0112345666674 5777777766653 12
Q ss_pred CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccc-hhhccCChHHHHHHHHhCCCCC
Q 038133 355 GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD-RMIDMGFEPQVVGVLDAMPSSN 433 (671)
Q Consensus 355 ~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah-~~~~~~f~~~i~~il~~l~~~~ 433 (671)
|-.+..-+...+ ....++.|+|+|||+|++.+..+.. ++++++||||||| ++++.+|...+ +...++..
T Consensus 147 G~~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~--Lk~lL~~r- 216 (1294)
T PRK11131 147 GGCVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGY--LKELLPRR- 216 (1294)
T ss_pred cceeceeecCcc------ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHH--HHHhhhcC-
Confidence 222222222111 1235689999999999999986654 9999999999999 68888876432 22222210
Q ss_pred CCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccc------hhHHHHHH
Q 038133 434 LKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES------EKFSRLQR 507 (671)
Q Consensus 434 ~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~------~k~~~L~~ 507 (671)
+ ..|+++||||+++ +.+...|...|. +.+.... ..+...+...... .....+..
T Consensus 217 --p------------dlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~ 276 (1294)
T PRK11131 217 --P------------DLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFD 276 (1294)
T ss_pred --C------------CceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHH
Confidence 1 4789999999975 467776666664 3443221 2233333333211 12233333
Q ss_pred HHH---HhCCCcEEEEecChhhHHHHHHHHHHcCCe---EEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCC
Q 038133 508 LLD---ELGDKTAIVFVNTKKNADMVAKNLDKLGYR---VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP 581 (671)
Q Consensus 508 ll~---~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~---v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp 581 (671)
.+. ....+.+||||++...++.+++.|...++. +..+||++++++|..+++. .|..+|||||+++++|||||
T Consensus 277 ~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIp 354 (1294)
T PRK11131 277 AVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVP 354 (1294)
T ss_pred HHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccC
Confidence 222 224688999999999999999999988654 6789999999999999876 47889999999999999999
Q ss_pred CCcEEEEcCC---------------C---CCHHHHHHHhcccCCCCCccEEEEEecCCC
Q 038133 582 DVAHVINYDM---------------P---GNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622 (671)
Q Consensus 582 ~v~~VI~~d~---------------p---~s~~~y~QriGR~gR~G~~g~ai~~~~~~d 622 (671)
+|++||+++. | .|.++|.||+|||||. .+|.||.|++.++
T Consensus 355 gI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 355 GIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred cceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 9999999863 3 4668999999999999 6999999998755
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.8e-32 Score=315.38 Aligned_cols=342 Identities=25% Similarity=0.312 Sum_probs=266.4
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchh
Q 038133 259 TPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE 338 (671)
Q Consensus 259 ~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~ 338 (671)
...+..++.+.|...|++||.+|+..+.+|+|+||+.+||||||.+|++|++..++..+ ..++|+|.||++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---------~a~AL~lYPtnA 126 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP---------SARALLLYPTNA 126 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---------CccEEEEechhh
Confidence 34457788888999999999999999999999999999999999999999999998733 448899999999
Q ss_pred hHHHHHHHHHHHHhhcC--cEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcc----cccCCccEEEEcccch
Q 038133 339 LAQQIEEETVKFAHYLG--IKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY----AVLNQCNYVVLDEADR 412 (671)
Q Consensus 339 La~Qi~~~~~k~~~~~~--i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~----~~l~~~~~vViDEah~ 412 (671)
||+...+.+.++...++ +.+..+.|.....+....+.+.++||+|||.+|...+.+.. ..++++.||||||+|-
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 99999999999999988 88888889888877766778889999999999988664432 2477899999999996
Q ss_pred hhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEE
Q 038133 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQH 492 (671)
Q Consensus 413 ~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~ 492 (671)
. .-.|+..+..++..+....-. .....|++..|||+....+ ++..+........+...+.........
T Consensus 207 Y-rGv~GS~vA~llRRL~~~~~~----------~~~~~q~i~~SAT~~np~e-~~~~l~~~~f~~~v~~~g~~~~~~~~~ 274 (851)
T COG1205 207 Y-RGVQGSEVALLLRRLLRRLRR----------YGSPLQIICTSATLANPGE-FAEELFGRDFEVPVDEDGSPRGLRYFV 274 (851)
T ss_pred c-cccchhHHHHHHHHHHHHHhc----------cCCCceEEEEeccccChHH-HHHHhcCCcceeeccCCCCCCCceEEE
Confidence 5 333555555554444221000 0015799999999977644 556666666555444444333333222
Q ss_pred EEEe-----cc---chhHHHHHHHHHHh--CCCcEEEEecChhhHHHHH----HHHHHcC----CeEEEecCCCCHHHHH
Q 038133 493 VVMM-----KE---SEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVA----KNLDKLG----YRVTTLHGGKSQEQRE 554 (671)
Q Consensus 493 ~~~~-----~~---~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~----~~L~~~~----~~v~~lhg~~~~~~R~ 554 (671)
+... .. ..+...+..+.... .+-++|+|+.+...++.+. ..+...+ ..+..++|++..++|.
T Consensus 275 ~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~ 354 (851)
T COG1205 275 RREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERR 354 (851)
T ss_pred EeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHH
Confidence 2211 11 13444444444433 4789999999999999997 4444445 6789999999999999
Q ss_pred HHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCC-CHHHHHHHhcccCCCCCccEEEEEecCC
Q 038133 555 ISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATTFLTFH 621 (671)
Q Consensus 555 ~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~ai~~~~~~ 621 (671)
.+...|++|+..++++|++++-||||.+++.||.++.|. +..++.|+.||+||.++.+..+..+..+
T Consensus 355 ~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 355 RIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred HHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999 9999999999999999777777777633
No 80
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.3e-31 Score=300.14 Aligned_cols=333 Identities=21% Similarity=0.251 Sum_probs=250.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.|++.|. +-.+.-+..-|+.++||+|||++|++|++..+. .|..++||+||++||.|.++++..++.
T Consensus 82 ~~ydvQl--iGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al-----------~G~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 82 RHFDVQL--IGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAI-----------SGRGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred CcchHHH--hhhhhhccCccccccCCCCchHHHHHHHHHHHh-----------cCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 5556555 444444455799999999999999999997765 366799999999999999999999999
Q ss_pred hcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcc-ccc-----CCccEEEEcccchhh-cc--------
Q 038133 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRY-AVL-----NQCNYVVLDEADRMI-DM-------- 416 (671)
Q Consensus 353 ~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~-~~l-----~~~~~vViDEah~~~-~~-------- 416 (671)
.+|+++.+++||.+.......+ .|+|+||||++| .|+|..+. ..+ ..+.++||||||.|+ |.
T Consensus 149 ~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIIS 226 (896)
T PRK13104 149 FLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIIS 226 (896)
T ss_pred ccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeee
Confidence 9999999999998877765444 699999999999 99987663 223 589999999999874 10
Q ss_pred -------CChHHHHHHHHhCCC------------------------------------------CCCC-CCCchh-----
Q 038133 417 -------GFEPQVVGVLDAMPS------------------------------------------SNLK-PENEDE----- 441 (671)
Q Consensus 417 -------~f~~~i~~il~~l~~------------------------------------------~~~~-~~~~~~----- 441 (671)
.....+..+...+.. .++- +.....
T Consensus 227 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~ 306 (896)
T PRK13104 227 GAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVN 306 (896)
T ss_pred CCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHH
Confidence 011111111111110 0000 000000
Q ss_pred -hh----------------------------------------------------------------hhhhhcceEEEEe
Q 038133 442 -EL----------------------------------------------------------------DEKRIYRTTYMFS 456 (671)
Q Consensus 442 -~~----------------------------------------------------------------~~~~~~~q~i~~S 456 (671)
.+ .-.+.|..+.+||
T Consensus 307 ~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMT 386 (896)
T PRK13104 307 AALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMT 386 (896)
T ss_pred HHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCC
Confidence 00 0023356677889
Q ss_pred ccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHH
Q 038133 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNL 534 (671)
Q Consensus 457 AT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L 534 (671)
+|.......+..-|--+ ++.+++..+....-....++.+...|+.++.+.+... .+.|+||||+++..++.++..|
T Consensus 387 GTa~te~~Ef~~iY~l~--Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L 464 (896)
T PRK13104 387 GTADTEAYEFQQIYNLE--VVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLL 464 (896)
T ss_pred CCChhHHHHHHHHhCCC--EEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 99877777777666544 4445544433333334456667788888888777543 4899999999999999999999
Q ss_pred HHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCC--------------------------------
Q 038133 535 DKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPD-------------------------------- 582 (671)
Q Consensus 535 ~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~-------------------------------- 582 (671)
.+.|+++.++|+.+.+.+++.+.+.|+.|. |+|||++++||+||.=
T Consensus 465 ~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (896)
T PRK13104 465 KKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHD 542 (896)
T ss_pred HHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999995 9999999999999952
Q ss_pred ------CcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCch
Q 038133 583 ------VAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624 (671)
Q Consensus 583 ------v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~ 624 (671)
-=+||-...+.|..--.|..||+||-|.+|.+.+|++.+|.-
T Consensus 543 ~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 543 EVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred HHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 236888888889888999999999999999999999988843
No 81
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.4e-32 Score=275.18 Aligned_cols=335 Identities=23% Similarity=0.271 Sum_probs=247.7
Q ss_pred HHHHHHH-cCCCC-CcHHHHHHHHHHhC-CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchh
Q 038133 262 LLRAVER-VGYKN-PSPIQMAAIPLGLQ-QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE 338 (671)
Q Consensus 262 i~~~i~~-~g~~~-p~~~Q~~ai~~il~-~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~ 338 (671)
+.++|++ +|+.. -++.|.+|+..+.. ++|+.+++|||+||+++|.+|+|.. +...||+.|..+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------------~gITIV~SPLiA 72 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------------GGITIVISPLIA 72 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------CCeEEEehHHHH
Confidence 3455544 36654 47899999998885 5799999999999999999999763 448899999999
Q ss_pred hHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHh------cCCeEEEEcchHHHHHH----hhcccccCCccEEEEc
Q 038133 339 LAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIR------QGCEVVIATPGRLIDCL----ERRYAVLNQCNYVVLD 408 (671)
Q Consensus 339 La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~------~~~~IiI~Tp~~L~~~l----~~~~~~l~~~~~vViD 408 (671)
|.+...+.+.+ +.+++.++.+..+..+....+. ....|++.||+...... .+....-.-+.|+|+|
T Consensus 73 LIkDQiDHL~~----LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 73 LIKDQIDHLKR----LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHHHHh----cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEec
Confidence 98865555554 5677777777776655443332 25789999998763221 1122234557899999
Q ss_pred ccchhhccC--ChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHH--hcCCCeEEEECCCCc
Q 038133 409 EADRMIDMG--FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARK--YLRNPVVVTIGTAGK 484 (671)
Q Consensus 409 Eah~~~~~~--f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~--~l~~p~~i~i~~~~~ 484 (671)
|||+..+|| |++.+..+-. +++.. .....+.+|||.++.+...+-. .|.+|+.+.--+..
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~-LRS~~--------------~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F- 212 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGS-LRSVC--------------PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF- 212 (641)
T ss_pred hhhhHhhhccccCcchhhhhh-HHhhC--------------CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch-
Confidence 999999998 7777765422 22111 1356899999999988875443 45566544322221
Q ss_pred cccceeEEEEEe-ccchhHHHHHHHHHHhC-------------CCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCH
Q 038133 485 ATELISQHVVMM-KESEKFSRLQRLLDELG-------------DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQ 550 (671)
Q Consensus 485 ~~~~i~~~~~~~-~~~~k~~~L~~ll~~~~-------------~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~ 550 (671)
..++...+.+- .-++-+..|.+.....- .+-.||||.++..|+.++-.|...|+++..+|.|+..
T Consensus 213 -R~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~ 291 (641)
T KOG0352|consen 213 -RDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKK 291 (641)
T ss_pred -hhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhccccc
Confidence 11111111000 01222334444433221 2447999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHH
Q 038133 551 EQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLK 630 (671)
Q Consensus 551 ~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~ 630 (671)
.+|..+.+.|.+++..|++||..+|+|+|-|+|..|||+++|.|+.-|.|-.||+||.|+..+|-+++.-+|..-..-|.
T Consensus 292 ~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 292 KERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred chhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877665554
Q ss_pred H
Q 038133 631 Q 631 (671)
Q Consensus 631 ~ 631 (671)
+
T Consensus 372 ~ 372 (641)
T KOG0352|consen 372 S 372 (641)
T ss_pred h
Confidence 3
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.2e-30 Score=303.60 Aligned_cols=341 Identities=16% Similarity=0.195 Sum_probs=228.8
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~--rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
.|.|||..++-.++.. ..+|+..++|.|||+.+.+.+..++.. +...++|||||+ .|..||..++.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~---------g~~~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT---------GRAERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc---------CCCCcEEEEcCH-HHHHHHHHHHHHH
Confidence 6899999998777643 468999999999999887776665543 345689999998 7999998888654
Q ss_pred HhhcCcEEEEEECCCchHHH--HHHHhcCCeEEEEcchHHHHHHhh-cccccCCccEEEEcccchhhccC-ChHHHHHHH
Q 038133 351 AHYLGIKVVSIVGGQSIEEQ--GFRIRQGCEVVIATPGRLIDCLER-RYAVLNQCNYVVLDEADRMIDMG-FEPQVVGVL 426 (671)
Q Consensus 351 ~~~~~i~v~~~~gg~~~~~~--~~~l~~~~~IiI~Tp~~L~~~l~~-~~~~l~~~~~vViDEah~~~~~~-f~~~i~~il 426 (671)
+++....+.++...... ........+++|+|++.|...-.. ..+.-..+++|||||||++.... ........+
T Consensus 222 ---F~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 222 ---FNLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred ---hCCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 34554444333211100 001112468999999988642111 12223578999999999985311 001111122
Q ss_pred HhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCH-HHH------------------HH---------------------
Q 038133 427 DAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP-AVE------------------RL--------------------- 466 (671)
Q Consensus 427 ~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~-~~~------------------~l--------------------- 466 (671)
..+... ...++++|||+.. ..+ .+
T Consensus 299 ~~La~~----------------~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~ 362 (956)
T PRK04914 299 EQLAEV----------------IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGE 362 (956)
T ss_pred HHHhhc----------------cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCC
Confidence 222110 2336777777531 000 00
Q ss_pred ---------HHHhcCCCe---------------------------------EEEECCCC----ccccceeEEEE------
Q 038133 467 ---------ARKYLRNPV---------------------------------VVTIGTAG----KATELISQHVV------ 494 (671)
Q Consensus 467 ---------~~~~l~~p~---------------------------------~i~i~~~~----~~~~~i~~~~~------ 494 (671)
...++.+.. .+.+.+.. .......+.+.
T Consensus 363 ~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~ 442 (956)
T PRK04914 363 KLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQ 442 (956)
T ss_pred cCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHH
Confidence 000111000 00000000 00000001100
Q ss_pred -------------------------------EeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHH-HHcCCeEE
Q 038133 495 -------------------------------MMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNL-DKLGYRVT 542 (671)
Q Consensus 495 -------------------------------~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L-~~~~~~v~ 542 (671)
....+.|...|.+++....+.++||||+++..+..+++.| ...|+.+.
T Consensus 443 y~~~~~~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~ 522 (956)
T PRK04914 443 YQTAIKVSLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAA 522 (956)
T ss_pred HHHHHHHhHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEE
Confidence 1122346677888888777889999999999999999999 46699999
Q ss_pred EecCCCCHHHHHHHHHHhhcC--CCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecC
Q 038133 543 TLHGGKSQEQREISLEGFRTK--RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620 (671)
Q Consensus 543 ~lhg~~~~~~R~~~l~~F~~g--~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~ 620 (671)
.+||+|++.+|+.+++.|+++ .+.|||||+++++|+|++.+++|||||+|+++..|.|||||+||.|+++.+.+++..
T Consensus 523 ~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 523 VFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred EEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 999999999999999999984 599999999999999999999999999999999999999999999999998888887
Q ss_pred CCchHHHHHHHHHHhc----CCCCCh
Q 038133 621 HDTDVFYDLKQMLIQS----NSPVPP 642 (671)
Q Consensus 621 ~d~~~~~~l~~~l~~~----~~~vp~ 642 (671)
........+.+.+.+. ...+|.
T Consensus 603 ~~~t~~e~i~~~~~~~l~ife~~~~~ 628 (956)
T PRK04914 603 LEGTAQERLFRWYHEGLNAFEHTCPT 628 (956)
T ss_pred CCCCHHHHHHHHHhhhcCceeccCCC
Confidence 7777777787777764 355554
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.4e-30 Score=297.18 Aligned_cols=316 Identities=19% Similarity=0.206 Sum_probs=220.0
Q ss_pred CCcHHHHHHHHHHhCC---CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQ---RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~---rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
.++++|.++++.++.+ +++++.|+||||||.+|+.++...+. .|.++|||+||++|+.|+++.+.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-----------~g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-----------QGKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-----------cCCeEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999999974 78999999999999999988877764 478999999999999999988876
Q ss_pred HHhhcCcEEEEEECCCchHHHHHH---Hh-cCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCC---hHHH
Q 038133 350 FAHYLGIKVVSIVGGQSIEEQGFR---IR-QGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGF---EPQV 422 (671)
Q Consensus 350 ~~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f---~~~i 422 (671)
. ++..+..++|+.+..+.... +. ..++|||+|++.+. ..+.++++|||||+|...-... ....
T Consensus 213 ~---fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 213 R---FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred H---hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 4 47789999999876554332 23 34799999998863 4578999999999997642211 1111
Q ss_pred HHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccch--
Q 038133 423 VGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESE-- 500 (671)
Q Consensus 423 ~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~-- 500 (671)
..+... .......+++++|||++......+.. +....+.+.............+..+....
T Consensus 283 r~va~~---------------ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~ 345 (679)
T PRK05580 283 RDLAVV---------------RAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRG 345 (679)
T ss_pred HHHHHH---------------HhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhh
Confidence 111110 01111578999999977654443322 22222222222111111111111111100
Q ss_pred -----hHHHHHHHHHHh--CCCcEEEEecChh------------------------------------------------
Q 038133 501 -----KFSRLQRLLDEL--GDKTAIVFVNTKK------------------------------------------------ 525 (671)
Q Consensus 501 -----k~~~L~~ll~~~--~~~~iIVF~~~~~------------------------------------------------ 525 (671)
-...+.+.+... .+.++|||+|++.
T Consensus 346 ~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp 425 (679)
T PRK05580 346 ENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACP 425 (679)
T ss_pred cccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCC
Confidence 112233333322 3668999988632
Q ss_pred ------------hHHHHHHHHHHc--CCeEEEecCCCCH--HHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEc
Q 038133 526 ------------NADMVAKNLDKL--GYRVTTLHGGKSQ--EQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINY 589 (671)
Q Consensus 526 ------------~~~~l~~~L~~~--~~~v~~lhg~~~~--~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~ 589 (671)
.++.+++.|.+. +.++..+|+++++ .+++.+++.|++|+++|||+|+++++|+|+|++++|+.+
T Consensus 426 ~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il 505 (679)
T PRK05580 426 ECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVL 505 (679)
T ss_pred CCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEE
Confidence 456778888876 7889999999874 678999999999999999999999999999999999655
Q ss_pred CC--CCC----------HHHHHHHhcccCCCCCccEEEEEecCCCchHH
Q 038133 590 DM--PGN----------IEMYTHRIGRTGRAGKTGVATTFLTFHDTDVF 626 (671)
Q Consensus 590 d~--p~s----------~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~ 626 (671)
|. +.+ ...|+|++||+||.++.|.++......+...+
T Consensus 506 ~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~ 554 (679)
T PRK05580 506 DADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVI 554 (679)
T ss_pred cCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHH
Confidence 44 332 36799999999999999999987765554433
No 84
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=1.4e-30 Score=295.07 Aligned_cols=335 Identities=24% Similarity=0.293 Sum_probs=256.4
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|. .|++.|.-+.-.+.+| .|+.+.||+|||++|.+|++...+ .|..+-|++||..||.|.++++.
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL-----------~G~~V~IvTpn~yLA~rd~e~~~ 143 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNAL-----------TGKGVHVVTVNDYLAKRDAEWMG 143 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHH-----------cCCCEEEEecCHHHHHHHHHHHH
Confidence 354 6788887666555555 599999999999999999964333 35668899999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcc------cccCCccEEEEcccchhh-cc----
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRY------AVLNQCNYVVLDEADRMI-DM---- 416 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~------~~l~~~~~vViDEah~~~-~~---- 416 (671)
.++..+|+++.+++|+.+..++...+ .|+|+|+||+.| .|+|..+. ..+..+.++||||||.|+ |.
T Consensus 144 ~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtp 221 (830)
T PRK12904 144 PLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTP 221 (830)
T ss_pred HHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCc
Confidence 99999999999999999888776554 499999999999 88887664 247789999999999874 10
Q ss_pred -----------CChHHHHHHHHhCCCC-----------------------------CCCC-CCch-h-------------
Q 038133 417 -----------GFEPQVVGVLDAMPSS-----------------------------NLKP-ENED-E------------- 441 (671)
Q Consensus 417 -----------~f~~~i~~il~~l~~~-----------------------------~~~~-~~~~-~------------- 441 (671)
.....+..+...+... ++-. .+.. .
T Consensus 222 LiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~ 301 (830)
T PRK12904 222 LIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELF 301 (830)
T ss_pred eeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHH
Confidence 1112222232322110 0000 0000 0
Q ss_pred --------------------------------------------------------hhhhhhhcceEEEEeccCCHHHHH
Q 038133 442 --------------------------------------------------------ELDEKRIYRTTYMFSATMPPAVER 465 (671)
Q Consensus 442 --------------------------------------------------------~~~~~~~~~q~i~~SAT~~~~~~~ 465 (671)
...-.+.|..+.+||.|.......
T Consensus 302 ~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E 381 (830)
T PRK12904 302 KRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEE 381 (830)
T ss_pred hcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHH
Confidence 000023466778899999877777
Q ss_pred HHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHH--hCCCcEEEEecChhhHHHHHHHHHHcCCeEEE
Q 038133 466 LARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE--LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTT 543 (671)
Q Consensus 466 l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~--~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~ 543 (671)
+...|--+ ++.+++..+....-....++.+...|+..+...+.. ..+.|+||||+++..++.+++.|.+.|+++..
T Consensus 382 ~~~iY~l~--vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~v 459 (830)
T PRK12904 382 FREIYNLD--VVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNV 459 (830)
T ss_pred HHHHhCCC--EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEe
Confidence 76666544 344444433332233344566778899999999866 45889999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCC--------------------------------------cE
Q 038133 544 LHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV--------------------------------------AH 585 (671)
Q Consensus 544 lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v--------------------------------------~~ 585 (671)
+||. +.+|+..+..|..+...|+|||++++||+||+-- =+
T Consensus 460 Lnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 460 LNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 9995 7899999999999999999999999999999642 36
Q ss_pred EEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 586 VINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 586 VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
||....+.|..--.|..||+||.|.+|.+..|++.+|.
T Consensus 538 VigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred EEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 88888899999999999999999999999999998884
No 85
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=2.8e-31 Score=313.61 Aligned_cols=300 Identities=21% Similarity=0.289 Sum_probs=214.7
Q ss_pred HHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEE
Q 038133 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVV 359 (671)
Q Consensus 280 ~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~ 359 (671)
+.+..+..++.+|++|+||||||.. +|.+.+-.. .+....+++..|.|..|..+ ...++..+|..+.
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~--------~~~~~~I~~tQPRRlAA~sv---A~RvA~elg~~lG 140 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG--------RGSHGLIGHTQPRRLAARTV---AQRIAEELGTPLG 140 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC--------CCCCceEecCCccHHHHHHH---HHHHHHHhCCCcc
Confidence 3445555677799999999999985 454433211 11234678888998887754 4455556777777
Q ss_pred EEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccc-hhhccCChHH-HHHHHHhCCCCCCCCC
Q 038133 360 SIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD-RMIDMGFEPQ-VVGVLDAMPSSNLKPE 437 (671)
Q Consensus 360 ~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah-~~~~~~f~~~-i~~il~~l~~~~~~~~ 437 (671)
..+|.....+. .....+.|+|+|+|.|+..+..+.. ++.+++||||||| ++++.+|.-. +..++...+
T Consensus 141 ~~VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp------- 210 (1283)
T TIGR01967 141 EKVGYKVRFHD--QVSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP------- 210 (1283)
T ss_pred eEEeeEEcCCc--ccCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhCC-------
Confidence 77775432222 1235688999999999998876654 8999999999999 6888887654 344433322
Q ss_pred CchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEecc------chhHHHHHHHHHH
Q 038133 438 NEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKE------SEKFSRLQRLLDE 511 (671)
Q Consensus 438 ~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~------~~k~~~L~~ll~~ 511 (671)
..++++||||++. +.++..|...|.+...+... .+...+..... ..+...+...+..
T Consensus 211 -----------dLKlIlmSATld~--~~fa~~F~~apvI~V~Gr~~----PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~ 273 (1283)
T TIGR01967 211 -----------DLKIIITSATIDP--ERFSRHFNNAPIIEVSGRTY----PVEVRYRPLVEEQEDDDLDQLEAILDAVDE 273 (1283)
T ss_pred -----------CCeEEEEeCCcCH--HHHHHHhcCCCEEEECCCcc----cceeEEecccccccchhhhHHHHHHHHHHH
Confidence 4689999999974 56777666666543333221 12222222211 1233333333332
Q ss_pred ---hCCCcEEEEecChhhHHHHHHHHHHcC---CeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcE
Q 038133 512 ---LGDKTAIVFVNTKKNADMVAKNLDKLG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAH 585 (671)
Q Consensus 512 ---~~~~~iIVF~~~~~~~~~l~~~L~~~~---~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~ 585 (671)
...+.+|||+++..+++.+++.|...+ +.+..+||++++++|..++..+ +..+|||||+++++|||||+|.+
T Consensus 274 l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~y 351 (1283)
T TIGR01967 274 LFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHY 351 (1283)
T ss_pred HHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeE
Confidence 246899999999999999999999864 4588999999999999986654 24689999999999999999999
Q ss_pred EEEcCCC------------------CCHHHHHHHhcccCCCCCccEEEEEecCCC
Q 038133 586 VINYDMP------------------GNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622 (671)
Q Consensus 586 VI~~d~p------------------~s~~~y~QriGR~gR~G~~g~ai~~~~~~d 622 (671)
||+++.+ .|.++|.||.||+||.| +|.||.+++.++
T Consensus 352 VIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~ 405 (1283)
T TIGR01967 352 VIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEED 405 (1283)
T ss_pred EEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHH
Confidence 9999853 36789999999999998 999999998654
No 86
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=3.1e-30 Score=291.04 Aligned_cols=335 Identities=23% Similarity=0.313 Sum_probs=251.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|. .|++.|.-+.-.+.+|+ |..+.||+|||+++.+|++.... .|..|.|++||..||.|.++++.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al-----------~G~~v~vvT~neyLA~Rd~e~~~ 142 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL-----------TGKGVHVVTVNEYLSSRDATEMG 142 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH-----------cCCCeEEEeccHHHHHhhHHHHH
Confidence 354 78888887666665664 99999999999999999988775 69999999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcc------cccCCccEEEEcccchhh-ccC---
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRY------AVLNQCNYVVLDEADRMI-DMG--- 417 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~------~~l~~~~~vViDEah~~~-~~~--- 417 (671)
.++..+|++|.++.|+.+..+....+ .|+|+++|...| .|+|..+. .....+.+.||||+|.++ |..
T Consensus 143 ~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartP 220 (796)
T PRK12906 143 ELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTP 220 (796)
T ss_pred HHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCc
Confidence 99999999999999987766554333 689999999887 34443321 235678999999999764 100
Q ss_pred ------------ChHHHHHHHHhCCC----------------------------------------CCCC-CCCch-h--
Q 038133 418 ------------FEPQVVGVLDAMPS----------------------------------------SNLK-PENED-E-- 441 (671)
Q Consensus 418 ------------f~~~i~~il~~l~~----------------------------------------~~~~-~~~~~-~-- 441 (671)
+...+..+...+.. .++- +.+.. .
T Consensus 221 Liisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~ 300 (796)
T PRK12906 221 LIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHH 300 (796)
T ss_pred eecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHH
Confidence 11111122221111 0000 00000 0
Q ss_pred ---hh----------------------------------------------------------------hhhhhcceEEE
Q 038133 442 ---EL----------------------------------------------------------------DEKRIYRTTYM 454 (671)
Q Consensus 442 ---~~----------------------------------------------------------------~~~~~~~q~i~ 454 (671)
.+ .-.+.|..+.+
T Consensus 301 i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~G 380 (796)
T PRK12906 301 IDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSG 380 (796)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhc
Confidence 00 00233667788
Q ss_pred EeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHH
Q 038133 455 FSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAK 532 (671)
Q Consensus 455 ~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~ 532 (671)
||.|.......+...|--+ ++.+++..+....-.....+.+...|...+...+... .+.|+||||+++..++.++.
T Consensus 381 mTGTa~~e~~Ef~~iY~l~--vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~ 458 (796)
T PRK12906 381 MTGTAKTEEEEFREIYNME--VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSH 458 (796)
T ss_pred cCCCCHHHHHHHHHHhCCC--EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 9999987766666655444 3445554433333333445567778999998888654 58999999999999999999
Q ss_pred HHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCC---CCc-----EEEEcCCCCCHHHHHHHhcc
Q 038133 533 NLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP---DVA-----HVINYDMPGNIEMYTHRIGR 604 (671)
Q Consensus 533 ~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp---~v~-----~VI~~d~p~s~~~y~QriGR 604 (671)
.|.+.|+++.++||++.+.++..+...++.|. |+|||+++|||+||+ +|. +||+++.|.|...|.|++||
T Consensus 459 ~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GR 536 (796)
T PRK12906 459 LLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGR 536 (796)
T ss_pred HHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhh
Confidence 99999999999999998777777777777776 999999999999994 899 99999999999999999999
Q ss_pred cCCCCCccEEEEEecCCCc
Q 038133 605 TGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 605 ~gR~G~~g~ai~~~~~~d~ 623 (671)
+||.|.+|.+.+|++.+|.
T Consensus 537 tGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 537 SGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred hccCCCCcceEEEEeccch
Confidence 9999999999999998874
No 87
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=6e-30 Score=289.15 Aligned_cols=351 Identities=20% Similarity=0.266 Sum_probs=257.2
Q ss_pred cCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccC
Q 038133 255 EGKLTPELLRAVE-----RVGYKNP---SPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE 326 (671)
Q Consensus 255 e~~l~~~i~~~i~-----~~g~~~p---~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~ 326 (671)
.+++..++...+. ..||..| +|+|.|+||.++.++++|+.++||+|||++|++|++..+..
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~----------- 134 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT----------- 134 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-----------
Confidence 3578888888876 6799999 99999999999999999999999999999999999987753
Q ss_pred CCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcccccC-----
Q 038133 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRYAVLN----- 400 (671)
Q Consensus 327 g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~~~l~----- 400 (671)
+..++||+||++||.|+.+++..+++.+|+++.+++||.+...+...+ +|+|+||||++| .+++..+.+.++
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~v 212 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQV 212 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhh
Confidence 334899999999999999999999999999999999999988886554 599999999999 999988755554
Q ss_pred --CccEEEEcccchhhcc----------------CC----hHHHHH-----------HH---------------------
Q 038133 401 --QCNYVVLDEADRMIDM----------------GF----EPQVVG-----------VL--------------------- 426 (671)
Q Consensus 401 --~~~~vViDEah~~~~~----------------~f----~~~i~~-----------il--------------------- 426 (671)
.+.++||||||.|+-. .. .+.+.. ++
T Consensus 213 qr~~~~~IIDEADsmLiDEArTPLIISg~~~~~~~~Y~~~~~~V~~l~~~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (970)
T PRK12899 213 GRGFYFAIIDEVDSILIDEARTPLIISGPGEKHNPVYFELKDKVAELVYLQRELCNRIALEARKVLDPFLDTDILPKDKK 292 (970)
T ss_pred cccccEEEEechhhhhhhccCCceeeeCCCccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 5689999999987521 00 000000 00
Q ss_pred -------------------------HhCCCC-------------------------------------------------
Q 038133 427 -------------------------DAMPSS------------------------------------------------- 432 (671)
Q Consensus 427 -------------------------~~l~~~------------------------------------------------- 432 (671)
..+...
T Consensus 293 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vde~~~~v~LTe~G~~ 372 (970)
T PRK12899 293 VMEGISEACRSLWLVSKGMPLNRVLRRVREHPDLRAMIDKWDVYYHAEQNKEESLEKLSELYIIVDEHNNDFELTDKGMQ 372 (970)
T ss_pred ccchhhhhhhhhhhhhccccchhhhhhhhcccchhhhhhhhhhhhhhhhhhhhccccccCCceEEecCCCeeeechhhHH
Confidence 000000
Q ss_pred ----------------------------C-CCCC---------------Cc-h-----hhhhh-----------------
Q 038133 433 ----------------------------N-LKPE---------------NE-D-----EELDE----------------- 445 (671)
Q Consensus 433 ----------------------------~-~~~~---------------~~-~-----~~~~~----------------- 445 (671)
+ +.+. .. . ..+.+
T Consensus 373 ~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~i~~aL~A~~lf~rd~dYiV~dg~V 452 (970)
T PRK12899 373 QWVEKAGGSAEDFVMMDMGHEYALIEEDETLSPADKINRKIAISEEDTQRKARAHGLRQLLRAHLLMEKDVDYIVRDDQI 452 (970)
T ss_pred HHhhhccCCHHHHhccchhhhhhccccccccCHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEECCEE
Confidence 0 0000 00 0 00000
Q ss_pred -----------------------------------------------hhhcceEEEEeccCCHHHHHHHHHhcCCCeEEE
Q 038133 446 -----------------------------------------------KRIYRTTYMFSATMPPAVERLARKYLRNPVVVT 478 (671)
Q Consensus 446 -----------------------------------------------~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~ 478 (671)
.+.|..+.+||.|.......+..-|-- .++.
T Consensus 453 ~IVDe~TGR~~~gr~~s~GLhQaiEaKE~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l--~v~~ 530 (970)
T PRK12899 453 VIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQTFATVTLQNFFRLYEKLAGMTGTAITESREFKEIYNL--YVLQ 530 (970)
T ss_pred EEEeCCCCccCCCCCcchHHHHHHHhhcCCCCCCCceeeeeehHHHHHhhCchhcccCCCCHHHHHHHHHHhCC--CEEE
Confidence 223556677888876665555554433 2344
Q ss_pred ECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHH
Q 038133 479 IGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREIS 556 (671)
Q Consensus 479 i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~ 556 (671)
+++..+.........++.+...|+.++..-+... .+.|+||-|.++...+.++..|...|+...+++..-. .++..
T Consensus 531 iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~ 608 (970)
T PRK12899 531 VPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAE 608 (970)
T ss_pred CCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHH
Confidence 4444332222222334556677888777766554 4889999999999999999999999999999988633 33322
Q ss_pred HHHhhcCC-CcEEEecccccccCCCCC--------CcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 557 LEGFRTKR-YNVLVATDVAGRGIDIPD--------VAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 557 l~~F~~g~-~~VLVaT~~~~~GiDIp~--------v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
+- -..|. -.|.|||+++|||.||.- -=+||....+.|..--.|..||+||-|.+|.+..|++.+|.
T Consensus 609 ii-a~AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 609 II-AGAGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred HH-HhcCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 21 23344 459999999999999942 34688888999999999999999999999999999998884
No 88
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=6.2e-30 Score=256.39 Aligned_cols=331 Identities=23% Similarity=0.335 Sum_probs=249.7
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 257 KLTPELLRAVER-VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 257 ~l~~~i~~~i~~-~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
+.+.+..+.+++ +....++|.|..+|+..+.+.+.+++.|||.||+++|.+|+|. ....+||+||
T Consensus 77 pws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~--------------adg~alvi~p 142 (695)
T KOG0353|consen 77 PWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC--------------ADGFALVICP 142 (695)
T ss_pred CCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh--------------cCCceEeech
Confidence 334455555533 4567899999999999999999999999999999999999975 3567999999
Q ss_pred chhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHH---Hh---cCCeEEEEcchHHHH---HHhh--cccccCCccE
Q 038133 336 TRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFR---IR---QGCEVVIATPGRLID---CLER--RYAVLNQCNY 404 (671)
Q Consensus 336 tr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~---~~~~IiI~Tp~~L~~---~l~~--~~~~l~~~~~ 404 (671)
...|.....-.+ +.+|+....+....+.++.... +. ....+++.||+.+.. ++++ ..+....+.+
T Consensus 143 lislmedqil~l----kqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 143 LISLMEDQILQL----KQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred hHHHHHHHHHHH----HHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 999987433333 3478888888777776654321 11 246799999998843 2211 1233667889
Q ss_pred EEEcccchhhccC--ChHHHH--HHHH-hCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEE
Q 038133 405 VVLDEADRMIDMG--FEPQVV--GVLD-AMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTI 479 (671)
Q Consensus 405 vViDEah~~~~~~--f~~~i~--~il~-~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i 479 (671)
|.+||+|+..+|| |++.+. +|+. .++ ...+++++||....+...++..|.-....++
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~------------------~~~iigltatatn~vl~d~k~il~ie~~~tf 280 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFK------------------GAPIIGLTATATNHVLDDAKDILCIEAAFTF 280 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCC------------------CCceeeeehhhhcchhhHHHHHHhHHhhhee
Confidence 9999999999987 666543 3332 232 3568999999998888877776654333333
Q ss_pred CCCCccccceeEEEEEe--ccchhHHHHHHHHHH-hCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHH
Q 038133 480 GTAGKATELISQHVVMM--KESEKFSRLQRLLDE-LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREIS 556 (671)
Q Consensus 480 ~~~~~~~~~i~~~~~~~--~~~~k~~~L~~ll~~-~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~ 556 (671)
......+ ++...+.-- ++.+-.+.+..+++. +.+...||||-+.+.|+.++..|+.+|+.+..+|..|.++++.-+
T Consensus 281 ~a~fnr~-nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 281 RAGFNRP-NLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGA 359 (695)
T ss_pred ecccCCC-CceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccc
Confidence 3222222 222222111 223333444444433 347778999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHH------------------------------------
Q 038133 557 LEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTH------------------------------------ 600 (671)
Q Consensus 557 l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~Q------------------------------------ 600 (671)
-+.|-.|++.|+|||-+++.|||-|+|++|||..+|.|++.|.|
T Consensus 360 hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkif 439 (695)
T KOG0353|consen 360 HQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIF 439 (695)
T ss_pred cccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceee
Confidence 99999999999999999999999999999999999999999999
Q ss_pred -------HhcccCCCCCccEEEEEecCCCch
Q 038133 601 -------RIGRTGRAGKTGVATTFLTFHDTD 624 (671)
Q Consensus 601 -------riGR~gR~G~~g~ai~~~~~~d~~ 624 (671)
-.||+||.|.+..|++++...|.-
T Consensus 440 favfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 440 FAVFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred eeeecchhccccccCCCcccEEEEechHHHH
Confidence 679999999999999999876643
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=9.2e-29 Score=274.57 Aligned_cols=291 Identities=19% Similarity=0.236 Sum_probs=197.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHH
Q 038133 292 IGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQG 371 (671)
Q Consensus 292 ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 371 (671)
++.|+||||||.+|+..+...+. .|.++|||+|+++|+.|+++.+.+. ++..+..++|+.+..+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~-----------~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA-----------LGKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKL 66 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHH
Confidence 47899999999999877655553 5789999999999999999888775 467888899887765432
Q ss_pred ---HHHhc-CCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC---ChH---HHHHHHHhCCCCCCCCCCchh
Q 038133 372 ---FRIRQ-GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG---FEP---QVVGVLDAMPSSNLKPENEDE 441 (671)
Q Consensus 372 ---~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~---f~~---~i~~il~~l~~~~~~~~~~~~ 441 (671)
..+.. .++|||||+..+. ..+.++++|||||+|...-.+ ... .+.......
T Consensus 67 ~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~------------ 127 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK------------ 127 (505)
T ss_pred HHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh------------
Confidence 23333 4799999998763 357899999999999864322 111 111122221
Q ss_pred hhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccch----hHHHHHHHHHHh--CCC
Q 038133 442 ELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESE----KFSRLQRLLDEL--GDK 515 (671)
Q Consensus 442 ~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~----k~~~L~~ll~~~--~~~ 515 (671)
...+++++|||++......+ .-+....+.+.............+..+.... -...|.+.+... .+.
T Consensus 128 ------~~~~vil~SATPsles~~~~--~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~ 199 (505)
T TIGR00595 128 ------FNCPVVLGSATPSLESYHNA--KQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGE 199 (505)
T ss_pred ------cCCCEEEEeCCCCHHHHHHH--hcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCC
Confidence 14679999999665433322 2222222222211111111111222222111 112333333322 367
Q ss_pred cEEEEecChhh------------------------------------------------------------HHHHHHHHH
Q 038133 516 TAIVFVNTKKN------------------------------------------------------------ADMVAKNLD 535 (671)
Q Consensus 516 ~iIVF~~~~~~------------------------------------------------------------~~~l~~~L~ 535 (671)
++|||+|++.. .+.+.+.|.
T Consensus 200 qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~ 279 (505)
T TIGR00595 200 QSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELA 279 (505)
T ss_pred cEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHH
Confidence 89999887654 477888888
Q ss_pred Hc--CCeEEEecCCCCHHHH--HHHHHHhhcCCCcEEEecccccccCCCCCCcEEE--EcCCCC----------CHHHHH
Q 038133 536 KL--GYRVTTLHGGKSQEQR--EISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI--NYDMPG----------NIEMYT 599 (671)
Q Consensus 536 ~~--~~~v~~lhg~~~~~~R--~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI--~~d~p~----------s~~~y~ 599 (671)
+. +.++..+|++++...+ +.+++.|++|+++|||+|+++++|+|+|+|++|+ ++|... ....|+
T Consensus 280 ~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~ 359 (505)
T TIGR00595 280 KLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLT 359 (505)
T ss_pred hhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHH
Confidence 77 7899999999987655 8999999999999999999999999999999986 444321 246789
Q ss_pred HHhcccCCCCCccEEEEEecCCCc
Q 038133 600 HRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 600 QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
|++||+||.++.|.+++.....+.
T Consensus 360 q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 360 QVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHHhccCCCCCCCEEEEEeCCCCC
Confidence 999999999999999865544433
No 90
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=9.7e-30 Score=285.95 Aligned_cols=383 Identities=20% Similarity=0.274 Sum_probs=275.3
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGLQQ-RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 257 ~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~-rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
.+|..-..++ .|+..+.++|....++.+.+ .++++|||||+|||-++++.+|..+...............+++|++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 4444444444 47778999999999999976 57999999999999999999999987654333222344568999999
Q ss_pred chhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc---ccCCccEEEEcccch
Q 038133 336 TRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA---VLNQCNYVVLDEADR 412 (671)
Q Consensus 336 tr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~---~l~~~~~vViDEah~ 412 (671)
..+|++.+...+.+....+|++|.-.+|......+. ..+..|+||||+.. |.+.++.. ..+-+.++|+||.|.
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999987754432 25689999999995 77766532 244578999999995
Q ss_pred hhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCC-eEEEECCCCccccceeE
Q 038133 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNP-VVVTIGTAGKATELISQ 491 (671)
Q Consensus 413 ~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p-~~i~i~~~~~~~~~i~~ 491 (671)
+ ....++.+..|....... .........++++|||+|.-. ..+.....++ .....++...+ -.+.|
T Consensus 449 L-hDdRGpvLESIVaRt~r~----------ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~syRp-vPL~q 515 (1674)
T KOG0951|consen 449 L-HDDRGPVLESIVARTFRR----------SESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSYRP-VPLKQ 515 (1674)
T ss_pred c-ccccchHHHHHHHHHHHH----------hhhcccCceeeeecccCCchh-hhHHHhccCcccccccCcccCc-CCccc
Confidence 5 444566665555443221 011122567999999998643 2333222233 23333333333 34566
Q ss_pred EEEEeccchhHHH--------HHHHHHHhCCCcEEEEecChhhHHHHHHHHHH---------------------------
Q 038133 492 HVVMMKESEKFSR--------LQRLLDELGDKTAIVFVNTKKNADMVAKNLDK--------------------------- 536 (671)
Q Consensus 492 ~~~~~~~~~k~~~--------L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~--------------------------- 536 (671)
.++-+.+...... ...++...+.+++||||.+++.....|+.++.
T Consensus 516 q~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~ 595 (1674)
T KOG0951|consen 516 QYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAG 595 (1674)
T ss_pred eEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhh
Confidence 6666654433222 23345555679999999999988888877741
Q ss_pred ----------cCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEE----EcCC------CCCHH
Q 038133 537 ----------LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI----NYDM------PGNIE 596 (671)
Q Consensus 537 ----------~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI----~~d~------p~s~~ 596 (671)
..++++++|.||+..+|+.+.+.|.+|.++|||+|..+++|+|+|.-.++| .||+ +.++.
T Consensus 596 ~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~ 675 (1674)
T KOG0951|consen 596 QAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPL 675 (1674)
T ss_pred cccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHH
Confidence 156789999999999999999999999999999999999999999977777 5655 34899
Q ss_pred HHHHHhcccCCCCCc--cEEEEEecCCCchHHHHHHHHHHhcCCCCChhHHhchhccCCCCCCCC
Q 038133 597 MYTHRIGRTGRAGKT--GVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPD 659 (671)
Q Consensus 597 ~y~QriGR~gR~G~~--g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~~~~~~~~~g~i~~ 659 (671)
+..||.||+||.+-+ |..+......+.-++..+.+--....+..-+.|.+-.+|.+.+| +.+
T Consensus 676 dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~ 739 (1674)
T KOG0951|consen 676 DVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRS 739 (1674)
T ss_pred HHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhh
Confidence 999999999998754 44554444444444434333333445666678889999999999 654
No 91
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=6.5e-29 Score=245.79 Aligned_cols=202 Identities=52% Similarity=0.823 Sum_probs=183.4
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEE
Q 038133 253 WAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVV 332 (671)
Q Consensus 253 f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLi 332 (671)
|+++++++.+.+.+...|+..|+++|.++++.+++++++++++|||+|||++|++|++..+...+ ...+++++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~------~~~~~~vii 74 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP------KKDGPQALI 74 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc------ccCCceEEE
Confidence 67789999999999999999999999999999999999999999999999999999999887521 135789999
Q ss_pred EecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccch
Q 038133 333 MAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412 (671)
Q Consensus 333 l~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~ 412 (671)
++||++|+.|+...+..+....++.+..++|+....+....+..+++|+|+||+.|.+.+.+....+.+++++|+||+|.
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR 154 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH
Confidence 99999999999999999988888999999999988777666666899999999999999988877889999999999999
Q ss_pred hhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEE
Q 038133 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVV 477 (671)
Q Consensus 413 ~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i 477 (671)
+.+.++...+..++..++. ..+++++|||+++.+..++..++.+|+.+
T Consensus 155 ~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 155 MLDMGFEDQIREILKLLPK-----------------DRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hhccChHHHHHHHHHhCCc-----------------ccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999999888764 58999999999999999999999998775
No 92
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=1.6e-28 Score=269.47 Aligned_cols=291 Identities=23% Similarity=0.275 Sum_probs=204.3
Q ss_pred CCCcHHHHHHHHHHhC----CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQ----QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~----~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
..|++||.+|+..+.. ++..++++|||+|||.+++..+... +..+||||||.+|+.||.+.+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------------~~~~Lvlv~~~~L~~Qw~~~~ 100 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------------KRSTLVLVPTKELLDQWAEAL 100 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------------cCCEEEEECcHHHHHHHHHHH
Confidence 3799999999999998 8899999999999999887766443 233999999999999998666
Q ss_pred HHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHH
Q 038133 348 VKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLD 427 (671)
Q Consensus 348 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~ 427 (671)
.++.... ..+..+.|+.... .. ..|+|+|.+.+.....-.....+.+++|||||||++....+. .+..
T Consensus 101 ~~~~~~~-~~~g~~~~~~~~~------~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~ 168 (442)
T COG1061 101 KKFLLLN-DEIGIYGGGEKEL------EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILE 168 (442)
T ss_pred HHhcCCc-cccceecCceecc------CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHH
Confidence 6553321 1233333333211 11 469999999986642111222447999999999998665544 3444
Q ss_pred hCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHH---HHHHHhcCCCeEEEECCCCccc-----c-ceeEEEE----
Q 038133 428 AMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE---RLARKYLRNPVVVTIGTAGKAT-----E-LISQHVV---- 494 (671)
Q Consensus 428 ~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~---~l~~~~l~~p~~i~i~~~~~~~-----~-~i~~~~~---- 494 (671)
.+.. ....+++|||++.... .....+++ |............ . .+.....
T Consensus 169 ~~~~-----------------~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~ 230 (442)
T COG1061 169 LLSA-----------------AYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTE 230 (442)
T ss_pred hhhc-----------------ccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccch
Confidence 4432 1117999999764321 11111221 3333222111100 0 0000000
Q ss_pred --------------------------------EeccchhHHHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHcCCeE
Q 038133 495 --------------------------------MMKESEKFSRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLGYRV 541 (671)
Q Consensus 495 --------------------------------~~~~~~k~~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~~~v 541 (671)
......+...+..++... .+.+++|||.++.++..++..+...+. +
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~ 309 (442)
T COG1061 231 DEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-V 309 (442)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-e
Confidence 001112333344444433 367999999999999999999998887 8
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCC
Q 038133 542 TTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGR 607 (671)
Q Consensus 542 ~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR 607 (671)
..+.|..+..+|+.+++.|+.|.+++||++.++.+|+|+|+++++|...+..|...|.||+||.-|
T Consensus 310 ~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 310 EAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=2.1e-27 Score=274.94 Aligned_cols=311 Identities=19% Similarity=0.249 Sum_probs=206.2
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 271 YKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 271 ~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
...|+|+|..+......+.-+|+.||||+|||.+++..+...+.. .....++|..||+++++|++..+.++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~---------~~~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ---------GLADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCCeEEEECcHHHHHHHHHHHHHHH
Confidence 348999999886554556678999999999999988877654432 23578999999999999999998876
Q ss_pred Hhhc--CcEEEEEECCCchHHHH---------------------HHHh---c---CCeEEEEcchHHHHHHhh-cccccC
Q 038133 351 AHYL--GIKVVSIVGGQSIEEQG---------------------FRIR---Q---GCEVVIATPGRLIDCLER-RYAVLN 400 (671)
Q Consensus 351 ~~~~--~i~v~~~~gg~~~~~~~---------------------~~l~---~---~~~IiI~Tp~~L~~~l~~-~~~~l~ 400 (671)
+... ...+...+|........ ..+. + -++|+|||...++..+.. +...+.
T Consensus 355 ~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR 434 (878)
T PRK09694 355 ASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIR 434 (878)
T ss_pred HHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHH
Confidence 5433 34566666654321100 0011 1 268999999888744432 222223
Q ss_pred Cc----cEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHH-HHHhcCC--
Q 038133 401 QC----NYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERL-ARKYLRN-- 473 (671)
Q Consensus 401 ~~----~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l-~~~~l~~-- 473 (671)
.+ ++|||||+|-+ +......+..++..+... ...+|+||||+|+..... ...|-..
T Consensus 435 ~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~----------------g~~vIllSATLP~~~r~~L~~a~~~~~~ 497 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA----------------GGSVILLSATLPATLKQKLLDTYGGHDP 497 (878)
T ss_pred HHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhc----------------CCcEEEEeCCCCHHHHHHHHHHhccccc
Confidence 23 48999999976 333333444455443221 356999999999887653 3333211
Q ss_pred -------CeEEEECCCCccc---------cceeEEEE--Ee--cc-chhHHHHHHHHHHh-CCCcEEEEecChhhHHHHH
Q 038133 474 -------PVVVTIGTAGKAT---------ELISQHVV--MM--KE-SEKFSRLQRLLDEL-GDKTAIVFVNTKKNADMVA 531 (671)
Q Consensus 474 -------p~~i~i~~~~~~~---------~~i~~~~~--~~--~~-~~k~~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~ 531 (671)
|.+.......... ......+. .. .. ......+..++... .++++|||||+++.|..++
T Consensus 498 ~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly 577 (878)
T PRK09694 498 VELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLY 577 (878)
T ss_pred cccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHH
Confidence 1110000000000 00111111 11 11 11122333344332 4778999999999999999
Q ss_pred HHHHHcC---CeEEEecCCCCHHHH----HHHHHHh-hcCC---CcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHH
Q 038133 532 KNLDKLG---YRVTTLHGGKSQEQR----EISLEGF-RTKR---YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTH 600 (671)
Q Consensus 532 ~~L~~~~---~~v~~lhg~~~~~~R----~~~l~~F-~~g~---~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~Q 600 (671)
+.|.+.+ ..+..+||.++..+| +.+++.| ++|. ..|||||+++++|||| +++++|....| ++.++|
T Consensus 578 ~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQ 654 (878)
T PRK09694 578 QRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQ 654 (878)
T ss_pred HHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHH
Confidence 9999764 679999999999999 4577888 6666 4799999999999999 68999998877 789999
Q ss_pred HhcccCCCCC
Q 038133 601 RIGRTGRAGK 610 (671)
Q Consensus 601 riGR~gR~G~ 610 (671)
|+||+||.+.
T Consensus 655 RaGR~~R~~~ 664 (878)
T PRK09694 655 RLGRLHRHHR 664 (878)
T ss_pred HHhccCCCCC
Confidence 9999999975
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.7e-28 Score=274.55 Aligned_cols=335 Identities=20% Similarity=0.249 Sum_probs=249.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|. .|++.|. +-.+.-+..-|..++||.|||++|++|++..++ .|..|.||+|+..||.|..+++.
T Consensus 79 lgm-~~ydVQl--iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al-----------~g~~VhIvT~ndyLA~RD~e~m~ 144 (908)
T PRK13107 79 FEM-RHFDVQL--LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNAL-----------TGKGVHVITVNDYLARRDAENNR 144 (908)
T ss_pred hCC-CcCchHH--hcchHhcCCccccccCCCCchHHHHHHHHHHHh-----------cCCCEEEEeCCHHHHHHHHHHHH
Confidence 344 5666665 444444556799999999999999999987765 46669999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcc-c-----ccCCccEEEEcccchhhccC----
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRY-A-----VLNQCNYVVLDEADRMIDMG---- 417 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~-~-----~l~~~~~vViDEah~~~~~~---- 417 (671)
.++..+|++|.++.++.+..+.... -+|+|+++||+.| .++|..+. . +...+.++||||+|.|+-..
T Consensus 145 ~l~~~lGlsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtP 222 (908)
T PRK13107 145 PLFEFLGLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTP 222 (908)
T ss_pred HHHHhcCCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCc
Confidence 9999999999999999886443221 2699999999999 88887652 2 24778999999999865211
Q ss_pred ------------ChHHHHHHHHhCCC-----------------------------------------------CCCC-CC
Q 038133 418 ------------FEPQVVGVLDAMPS-----------------------------------------------SNLK-PE 437 (671)
Q Consensus 418 ------------f~~~i~~il~~l~~-----------------------------------------------~~~~-~~ 437 (671)
+...+..+...+.. .++- +.
T Consensus 223 LIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~ 302 (908)
T PRK13107 223 LIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAA 302 (908)
T ss_pred eeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCch
Confidence 11111111111100 0000 00
Q ss_pred Cch-h-----hh----------------------------------------------------------------hhhh
Q 038133 438 NED-E-----EL----------------------------------------------------------------DEKR 447 (671)
Q Consensus 438 ~~~-~-----~~----------------------------------------------------------------~~~~ 447 (671)
... . .+ .-.+
T Consensus 303 ~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr 382 (908)
T PRK13107 303 NISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFR 382 (908)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHH
Confidence 000 0 00 0023
Q ss_pred hcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChh
Q 038133 448 IYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKK 525 (671)
Q Consensus 448 ~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~ 525 (671)
.|..+.+||.|.......+..-|--+ ++.+++..+....-....++.....|+.++.+.+... .+.|+||||+++.
T Consensus 383 ~Y~kL~GMTGTa~te~~Ef~~iY~l~--Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~ 460 (908)
T PRK13107 383 QYEKLAGMTGTADTEAFEFQHIYGLD--TVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIE 460 (908)
T ss_pred hhhHhhcccCCChHHHHHHHHHhCCC--EEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHH
Confidence 35567788999887777776666544 3444444333333333345567778888887777643 4889999999999
Q ss_pred hHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCC------------------------
Q 038133 526 NADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP------------------------ 581 (671)
Q Consensus 526 ~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp------------------------ 581 (671)
.++.++..|...++.+.++|+.+++.+++.+.+.|+.|. |+|||+++|||+||.
T Consensus 461 ~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~ 538 (908)
T PRK13107 461 QSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIK 538 (908)
T ss_pred HHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHH
Confidence 999999999999999999999999999999999999998 999999999999996
Q ss_pred -------------CCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 582 -------------DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 582 -------------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
+-=+||-...+.|..--.|..||+||-|.+|.+.+|++.+|.
T Consensus 539 ~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 539 ADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 224688888899999999999999999999999999998885
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=2.8e-26 Score=272.74 Aligned_cols=306 Identities=21% Similarity=0.297 Sum_probs=195.7
Q ss_pred CCCcHHHHHHHHHHh----C-CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGL----Q-QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEE 346 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il----~-~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~ 346 (671)
..+++||.+||..+. . .+.++++++||||||.+++..+...+.. ...+++|||||+++|+.|+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~---------~~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA---------KRFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc---------CccCeEEEEecHHHHHHHHHHH
Confidence 358999999998876 2 3679999999999998865544333322 2457899999999999999998
Q ss_pred HHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc-----ccccCCccEEEEcccchhhc------
Q 038133 347 TVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR-----YAVLNQCNYVVLDEADRMID------ 415 (671)
Q Consensus 347 ~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~-----~~~l~~~~~vViDEah~~~~------ 415 (671)
|..+....+..+..+++.....+. .......|+|+|++.|...+... ...+..+++||+||||+...
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~ 560 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMS 560 (1123)
T ss_pred HHhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccc
Confidence 887632222111112221111111 11235789999999997765321 13467899999999999632
Q ss_pred ---cCC------hHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHH--------------HHHhcC
Q 038133 416 ---MGF------EPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERL--------------ARKYLR 472 (671)
Q Consensus 416 ---~~f------~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l--------------~~~~l~ 472 (671)
.+| ...+..++.++. ...++||||+......+ ...|+.
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yFd-------------------A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv 621 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYFD-------------------AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLI 621 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhcC-------------------ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcc
Confidence 111 234555555442 34799999986432211 112222
Q ss_pred C---CeEEEEC--CCCc---cc---cceeE---EE--EEeccc--------hh-------H----HHHHHHHHHhCCCcE
Q 038133 473 N---PVVVTIG--TAGK---AT---ELISQ---HV--VMMKES--------EK-------F----SRLQRLLDELGDKTA 517 (671)
Q Consensus 473 ~---p~~i~i~--~~~~---~~---~~i~~---~~--~~~~~~--------~k-------~----~~L~~ll~~~~~~~i 517 (671)
+ |..+... ..+. .. ..+.. .+ ....+. ++ . ..+...+....++++
T Consensus 622 ~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~Kt 701 (1123)
T PRK11448 622 DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKT 701 (1123)
T ss_pred cCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcE
Confidence 1 1111110 0000 00 00000 00 000000 00 0 111222222235799
Q ss_pred EEEecChhhHHHHHHHHHHc------C---CeEEEecCCCCHHHHHHHHHHhhcCCC-cEEEecccccccCCCCCCcEEE
Q 038133 518 IVFVNTKKNADMVAKNLDKL------G---YRVTTLHGGKSQEQREISLEGFRTKRY-NVLVATDVAGRGIDIPDVAHVI 587 (671)
Q Consensus 518 IVF~~~~~~~~~l~~~L~~~------~---~~v~~lhg~~~~~~R~~~l~~F~~g~~-~VLVaT~~~~~GiDIp~v~~VI 587 (671)
||||.++.+|+.+++.|.+. + ..+..+||+++ ++..+++.|+++.. .|||+++++.+|+|+|.|.+||
T Consensus 702 iIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vV 779 (1123)
T PRK11448 702 LIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLV 779 (1123)
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEE
Confidence 99999999999999988753 2 24567899875 46789999999887 5999999999999999999999
Q ss_pred EcCCCCCHHHHHHHhcccCCCC
Q 038133 588 NYDMPGNIEMYTHRIGRTGRAG 609 (671)
Q Consensus 588 ~~d~p~s~~~y~QriGR~gR~G 609 (671)
++.++.|...|.|++||+.|..
T Consensus 780 f~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 780 FLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred EecCCCCHHHHHHHHhhhccCC
Confidence 9999999999999999999964
No 96
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=248.17 Aligned_cols=327 Identities=21% Similarity=0.233 Sum_probs=239.0
Q ss_pred HHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHH
Q 038133 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345 (671)
Q Consensus 266 i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~ 345 (671)
+..++| +|-..|++||-++..|..+++.|+|.+|||.++-.++.... ..+.+++|..|-++|.+|-++
T Consensus 291 a~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-----------~h~TR~iYTSPIKALSNQKfR 358 (1248)
T KOG0947|consen 291 ALIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-----------KHMTRTIYTSPIKALSNQKFR 358 (1248)
T ss_pred HhhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-----------hhccceEecchhhhhccchHH
Confidence 344566 78899999999999999999999999999988765543322 267889999999999999777
Q ss_pred HHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHH
Q 038133 346 ETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGV 425 (671)
Q Consensus 346 ~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~i 425 (671)
.|+.-+...| .++|... +...+.++|+|.+.|-.+|-+....+.++.+||+||+|.+.|...+..+..+
T Consensus 359 DFk~tF~Dvg----LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEV 427 (1248)
T KOG0947|consen 359 DFKETFGDVG----LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEV 427 (1248)
T ss_pred HHHHhccccc----eeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceee
Confidence 7766544333 6777654 4456789999999999999999888999999999999999998888778888
Q ss_pred HHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcC--CCeEEEECCCCccccceeEEEE---------
Q 038133 426 LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR--NPVVVTIGTAGKATELISQHVV--------- 494 (671)
Q Consensus 426 l~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~--~p~~i~i~~~~~~~~~i~~~~~--------- 494 (671)
+-.+|. ..++|++|||.|...+ ++.+.-+ ...+..++....++. .++.+.
T Consensus 428 iIMlP~-----------------HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVP-LEh~l~t~~~l~kii 488 (1248)
T KOG0947|consen 428 IIMLPR-----------------HVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVP-LEHYLYTKKSLFKII 488 (1248)
T ss_pred eeeccc-----------------cceEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccc-eEEEEEeccceehhh
Confidence 888877 6889999999988755 4433211 122222222111111 011000
Q ss_pred -----Eecc----------------------------------------c---------hhH--HHHHHHHHHh---CCC
Q 038133 495 -----MMKE----------------------------------------S---------EKF--SRLQRLLDEL---GDK 515 (671)
Q Consensus 495 -----~~~~----------------------------------------~---------~k~--~~L~~ll~~~---~~~ 515 (671)
++.. . ++. .....++... .--
T Consensus 489 dq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lL 568 (1248)
T KOG0947|consen 489 DQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLL 568 (1248)
T ss_pred cccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccC
Confidence 0000 0 011 1234444433 345
Q ss_pred cEEEEecChhhHHHHHHHHHHc---------------------------------------CCeEEEecCCCCHHHHHHH
Q 038133 516 TAIVFVNTKKNADMVAKNLDKL---------------------------------------GYRVTTLHGGKSQEQREIS 556 (671)
Q Consensus 516 ~iIVF~~~~~~~~~l~~~L~~~---------------------------------------~~~v~~lhg~~~~~~R~~~ 556 (671)
|+||||-+++.|+..+++|... .-+++++|||+-+--++-+
T Consensus 569 P~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~V 648 (1248)
T KOG0947|consen 569 PVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVV 648 (1248)
T ss_pred ceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHH
Confidence 8999999999999999999432 2247899999999999999
Q ss_pred HHHhhcCCCcEEEecccccccCCCCCCcEEEEcCC---------CCCHHHHHHHhcccCCCCC--ccEEEEEecCCCchH
Q 038133 557 LEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM---------PGNIEMYTHRIGRTGRAGK--TGVATTFLTFHDTDV 625 (671)
Q Consensus 557 l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~---------p~s~~~y~QriGR~gR~G~--~g~ai~~~~~~d~~~ 625 (671)
...|..|-++||+||..++.|+|.|.-.+|+. .+ --++-.|+|+.|||||.|- .|+++++.... ..-
T Consensus 649 E~LFqrGlVKVLFATETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~ 726 (1248)
T KOG0947|consen 649 ELLFQRGLVKVLFATETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPS 726 (1248)
T ss_pred HHHHhcCceEEEeehhhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCC
Confidence 99999999999999999999999998666662 22 1268899999999999984 57777766554 455
Q ss_pred HHHHHHHHHhc
Q 038133 626 FYDLKQMLIQS 636 (671)
Q Consensus 626 ~~~l~~~l~~~ 636 (671)
...|+.++.-.
T Consensus 727 ~a~l~~li~G~ 737 (1248)
T KOG0947|consen 727 AATLKRLIMGG 737 (1248)
T ss_pred HHHHhhHhcCC
Confidence 55666655443
No 97
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=7.1e-26 Score=244.51 Aligned_cols=310 Identities=18% Similarity=0.192 Sum_probs=224.6
Q ss_pred HHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEE
Q 038133 279 MAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKV 358 (671)
Q Consensus 279 ~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v 358 (671)
.+.+..+-.++-+|++|+||||||...--.++..-.. ....+.|..|.|.-|.- ..++++...+...
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~----------~~g~I~~TQPRRVAavs---lA~RVAeE~~~~l 123 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA----------SSGKIACTQPRRVAAVS---LAKRVAEEMGCQL 123 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc----------cCCcEEeecCchHHHHH---HHHHHHHHhCCCc
Confidence 4455566677789999999999998754444443222 33349999999998884 5566676777766
Q ss_pred EEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCC
Q 038133 359 VSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN 438 (671)
Q Consensus 359 ~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~ 438 (671)
...+|..-..+.. ......|.++|.|.|+..+..+.. |+++++|||||||.=. -.-+.+.+++..+-.
T Consensus 124 G~~VGY~IRFed~--ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERs--l~TDiLlGlLKki~~------- 191 (674)
T KOG0922|consen 124 GEEVGYTIRFEDS--TSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERS--LHTDILLGLLKKILK------- 191 (674)
T ss_pred CceeeeEEEeccc--CCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhh--hHHHHHHHHHHHHHh-------
Confidence 6666655444332 223578999999999988876666 9999999999999410 012344566665533
Q ss_pred chhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEE
Q 038133 439 EDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAI 518 (671)
Q Consensus 439 ~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iI 518 (671)
++....++.+|||+. .+.+...|...|++..-|...+........-.......-+..+.+|....+.+.+|
T Consensus 192 -------~R~~LklIimSATld--a~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDIL 262 (674)
T KOG0922|consen 192 -------KRPDLKLIIMSATLD--AEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDIL 262 (674)
T ss_pred -------cCCCceEEEEeeeec--HHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEE
Confidence 222567999999995 45566666666766665554433211111111111223455566666666788999
Q ss_pred EEecChhhHHHHHHHHHHc------C--CeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcC
Q 038133 519 VFVNTKKNADMVAKNLDKL------G--YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD 590 (671)
Q Consensus 519 VF~~~~~~~~~l~~~L~~~------~--~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d 590 (671)
||.+..++++.+++.|.+. + .-+..+||.++.+++..++..-..|..+|++||++++..|.||++.+||.-+
T Consensus 263 vFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG 342 (674)
T KOG0922|consen 263 VFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSG 342 (674)
T ss_pred EEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCC
Confidence 9999999999999999876 1 1357899999999999999988889999999999999999999999999554
Q ss_pred C------------------CCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 591 M------------------PGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 591 ~------------------p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
+ |-|.++-.||.|||||.| +|.||.+++..+.
T Consensus 343 ~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 343 FVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred ceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 3 347888999999999997 8999999997664
No 98
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.94 E-value=5.8e-25 Score=256.87 Aligned_cols=330 Identities=18% Similarity=0.242 Sum_probs=210.8
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGL----QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.++|||.+++..++ .|.++|++.++|.|||+..+.. +.++... .+....+|||||.. |..||..++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~-------~~~~gp~LIVvP~S-lL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEY-------RGITGPHMVVAPKS-TLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHh-------cCCCCCEEEEeChH-HHHHHHHHHH
Confidence 68999999998886 5778999999999999876443 3444321 12334689999975 5577999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHH--H-hcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC--------
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFR--I-RQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG-------- 417 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~--l-~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~-------- 417 (671)
+++. .++++.++|.......... + ....+|+|+|++.+..... .+.-..+.+|||||||++-+..
T Consensus 240 kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~Sklskalr 315 (1033)
T PLN03142 240 RFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNENSLLSKTMR 315 (1033)
T ss_pred HHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHHHHHHHHHH
Confidence 8874 3566777775443222111 1 2357999999999865432 2223467899999999975422
Q ss_pred -----------------ChHHHHHHHHhCCCCCCCCCCch------------h-h---hhh----------------hhh
Q 038133 418 -----------------FEPQVVGVLDAMPSSNLKPENED------------E-E---LDE----------------KRI 448 (671)
Q Consensus 418 -----------------f~~~i~~il~~l~~~~~~~~~~~------------~-~---~~~----------------~~~ 448 (671)
....+..++..+.+..+...... . . +.. ...
T Consensus 316 ~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 316 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred HhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 11222333333322111110000 0 0 000 000
Q ss_pred cceEEEEeccCCHHHHHHHHH---------------------------hcCCCeEEEECCCCccccceeEEEEEeccchh
Q 038133 449 YRTTYMFSATMPPAVERLARK---------------------------YLRNPVVVTIGTAGKATELISQHVVMMKESEK 501 (671)
Q Consensus 449 ~~q~i~~SAT~~~~~~~l~~~---------------------------~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k 501 (671)
......+...|++.-..+... .+..|..+.....+.. ....-..+..+.|
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~---~~~~e~lie~SgK 472 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPP---YTTGEHLVENSGK 472 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCc---ccchhHHhhhhhH
Confidence 011111222222221111111 1112211110000000 0000012234567
Q ss_pred HHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC---CcEEEecccccc
Q 038133 502 FSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR---YNVLVATDVAGR 576 (671)
Q Consensus 502 ~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~---~~VLVaT~~~~~ 576 (671)
+..|..+|... .+.++|||+.....++.|.++|...++.++.+||+++..+|..+++.|+... +-+|++|.+++.
T Consensus 473 l~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGl 552 (1033)
T PLN03142 473 MVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGL 552 (1033)
T ss_pred HHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccccc
Confidence 77788887765 3789999999999999999999999999999999999999999999997633 457899999999
Q ss_pred cCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEe
Q 038133 577 GIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618 (671)
Q Consensus 577 GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~ 618 (671)
|||++.+++||+||++|++..+.|++||+.|.|+...|+++.
T Consensus 553 GINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 553 GINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred CCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 999999999999999999999999999999999876554443
No 99
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.8e-25 Score=255.15 Aligned_cols=303 Identities=22% Similarity=0.262 Sum_probs=217.6
Q ss_pred HHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEE
Q 038133 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVV 359 (671)
Q Consensus 280 ~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~ 359 (671)
+.+..+.++.-+|++||||||||...-..++.... ..+..+.++-|.|.-|. +...+++..++.++.
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----------~~~g~I~~tQPRRlAAr---svA~RvAeel~~~~G 123 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----------GIAGKIGCTQPRRLAAR---SVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----------ccCCeEEecCchHHHHH---HHHHHHHHHhCCCcC
Confidence 33444455667999999999999876555555432 35678999999997776 455566667777766
Q ss_pred EEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccch-hhccCChHH-HHHHHHhCCCCCCCCC
Q 038133 360 SIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR-MIDMGFEPQ-VVGVLDAMPSSNLKPE 437 (671)
Q Consensus 360 ~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~-~~~~~f~~~-i~~il~~l~~~~~~~~ 437 (671)
..+|.....+. .......|-++|.|.|+..+..+.. |+.+++|||||+|. .++.++.-. +..++...+.
T Consensus 124 ~~VGY~iRfe~--~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~------ 194 (845)
T COG1643 124 ETVGYSIRFES--KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD------ 194 (845)
T ss_pred ceeeEEEEeec--cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC------
Confidence 66665554433 2234678999999999999988777 99999999999994 333322211 1122333322
Q ss_pred CchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEe-ccch-hHHHHHHHHH---Hh
Q 038133 438 NEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM-KESE-KFSRLQRLLD---EL 512 (671)
Q Consensus 438 ~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~-~~~~-k~~~L~~ll~---~~ 512 (671)
...+|.||||+.. +++...|-..|++..-+...+. ...+... .... -...+...+. ..
T Consensus 195 -----------DLKiIimSATld~--~rfs~~f~~apvi~i~GR~fPV----ei~Y~~~~~~d~~l~~ai~~~v~~~~~~ 257 (845)
T COG1643 195 -----------DLKLIIMSATLDA--ERFSAYFGNAPVIEIEGRTYPV----EIRYLPEAEADYILLDAIVAAVDIHLRE 257 (845)
T ss_pred -----------CceEEEEecccCH--HHHHHHcCCCCEEEecCCccce----EEEecCCCCcchhHHHHHHHHHHHhccC
Confidence 4679999999965 4566655556666555544332 2222111 1111 2233333333 33
Q ss_pred CCCcEEEEecChhhHHHHHHHHHH----cCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDK----LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~ 588 (671)
..|.+|||.+....++.+++.|.+ ....++.+||.++.+++..+++--..|.-+|++||++++++|.||+|.+||.
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VID 337 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVID 337 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEec
Confidence 588999999999999999999998 3478999999999999999988888887779999999999999999999995
Q ss_pred cCC------------------CCCHHHHHHHhcccCCCCCccEEEEEecCCC
Q 038133 589 YDM------------------PGNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622 (671)
Q Consensus 589 ~d~------------------p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d 622 (671)
-+. |-|-++..||.|||||.+ +|.||-+++.++
T Consensus 338 sG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 338 SGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred CCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 543 337788899999999996 899999998743
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1e-24 Score=250.18 Aligned_cols=322 Identities=23% Similarity=0.249 Sum_probs=237.0
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 264 RAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 264 ~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
.....+|| .|-++|.+|+-++..+..+++|||||||||.++-.++...+. +|.+++|++|.++|.+|.
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-----------~~qrviYTsPIKALsNQK 178 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-----------DGQRVIYTSPIKALSNQK 178 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-----------cCCceEeccchhhhhhhH
Confidence 34456678 789999999999999999999999999999988777665553 567799999999999999
Q ss_pred HHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHH
Q 038133 344 EEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVV 423 (671)
Q Consensus 344 ~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~ 423 (671)
+..+...+....--+..++|..+ +..++.++|+|.+.|.+++-+....+..+.+|||||+|.|.|...+..+.
T Consensus 179 yrdl~~~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 179 YRDLLAKFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHHHHHHhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHH
Confidence 88877654433112455666655 34568899999999999999888889999999999999999999888888
Q ss_pred HHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhc---CCCeEEEECCCCccccceeEEE------E
Q 038133 424 GVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYL---RNPVVVTIGTAGKATELISQHV------V 494 (671)
Q Consensus 424 ~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l---~~p~~i~i~~~~~~~~~i~~~~------~ 494 (671)
.++-.+|. ..+++++|||.|.+.+ +..++- ..|..+.. ......+.....+ .
T Consensus 252 E~Ii~lP~-----------------~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~-t~~RpvPL~~~~~~~~~l~~ 312 (1041)
T COG4581 252 EVIILLPD-----------------HVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVS-TEHRPVPLEHFVYVGKGLFD 312 (1041)
T ss_pred HHHHhcCC-----------------CCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEe-ecCCCCCeEEEEecCCceee
Confidence 99888887 5789999999987643 433322 23333322 2222221111111 0
Q ss_pred Eeccchh-----------------------------------------------HHHHHHHHHHhCCCcEEEEecChhhH
Q 038133 495 MMKESEK-----------------------------------------------FSRLQRLLDELGDKTAIVFVNTKKNA 527 (671)
Q Consensus 495 ~~~~~~k-----------------------------------------------~~~L~~ll~~~~~~~iIVF~~~~~~~ 527 (671)
.+++..+ ...+...+.....-|+|+||-++..|
T Consensus 313 lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~C 392 (1041)
T COG4581 313 LVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGC 392 (1041)
T ss_pred eecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhH
Confidence 1111110 01122222223356899999999999
Q ss_pred HHHHHHHHHc----------------------------CC-------------eEEEecCCCCHHHHHHHHHHhhcCCCc
Q 038133 528 DMVAKNLDKL----------------------------GY-------------RVTTLHGGKSQEQREISLEGFRTKRYN 566 (671)
Q Consensus 528 ~~l~~~L~~~----------------------------~~-------------~v~~lhg~~~~~~R~~~l~~F~~g~~~ 566 (671)
+..+..+... ++ .++++|+||=+..++.+...|..|-.+
T Consensus 393 e~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvk 472 (1041)
T COG4581 393 EEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVK 472 (1041)
T ss_pred HHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcccee
Confidence 9988877310 12 256899999999999999999999999
Q ss_pred EEEecccccccCCCCCCcEEE----EcC----CCCCHHHHHHHhcccCCCCCc--cEEEEEecCCCc
Q 038133 567 VLVATDVAGRGIDIPDVAHVI----NYD----MPGNIEMYTHRIGRTGRAGKT--GVATTFLTFHDT 623 (671)
Q Consensus 567 VLVaT~~~~~GiDIp~v~~VI----~~d----~p~s~~~y~QriGR~gR~G~~--g~ai~~~~~~d~ 623 (671)
||+||.+++.|+|+|.-++|+ .+| .+-+...|+|+.||+||.|.+ |.+++.-.+...
T Consensus 473 vvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~ 539 (1041)
T COG4581 473 VVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFES 539 (1041)
T ss_pred EEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCC
Confidence 999999999999999876665 122 234789999999999999964 888887555444
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=4e-25 Score=245.92 Aligned_cols=344 Identities=24% Similarity=0.261 Sum_probs=253.0
Q ss_pred CCHHHHH-HHHHcCCCCCcHHHHHHH--HHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEe
Q 038133 258 LTPELLR-AVERVGYKNPSPIQMAAI--PLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA 334 (671)
Q Consensus 258 l~~~i~~-~i~~~g~~~p~~~Q~~ai--~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~ 334 (671)
+++.... .....|...++.+|.+++ |.++.++++|..+||+.|||+++-+.|+..+.. ....++.+.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~----------~rr~~llil 276 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC----------RRRNVLLIL 276 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH----------HhhceeEec
Confidence 4444444 445668899999999987 788899999999999999999999999887764 567799999
Q ss_pred cchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcc--cccCCccEEEEcccch
Q 038133 335 PTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY--AVLNQCNYVVLDEADR 412 (671)
Q Consensus 335 Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~--~~l~~~~~vViDEah~ 412 (671)
|....++.-.+.+..|+..+|+.+....|....... .+.-++.|||-++-.-++++-. -.+..+++|||||.|.
T Consensus 277 p~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm 352 (1008)
T KOG0950|consen 277 PYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM 352 (1008)
T ss_pred ceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee
Confidence 999999999999999999999999988876554322 3446899999998765554422 2367789999999999
Q ss_pred hhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEE
Q 038133 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQH 492 (671)
Q Consensus 413 ~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~ 492 (671)
+.+.+.+..+..++.++...+... ..|+++||||+|.. .+...++....+.+-..+-...+.+.--
T Consensus 353 i~d~~rg~~lE~~l~k~~y~~~~~------------~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G 418 (1008)
T KOG0950|consen 353 IGDKGRGAILELLLAKILYENLET------------SVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPG 418 (1008)
T ss_pred eeccccchHHHHHHHHHHHhcccc------------ceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCC
Confidence 999999988888888775544332 37899999999863 2334444433332211111111111111
Q ss_pred EEEeccchhHHHHHHH-------------------HHHh-C-CCcEEEEecChhhHHHHHHHHHH---------------
Q 038133 493 VVMMKESEKFSRLQRL-------------------LDEL-G-DKTAIVFVNTKKNADMVAKNLDK--------------- 536 (671)
Q Consensus 493 ~~~~~~~~k~~~L~~l-------------------l~~~-~-~~~iIVF~~~~~~~~~l~~~L~~--------------- 536 (671)
..+... .+...+..+ +.+. + +..+||||++++.|+.++..+..
T Consensus 419 ~~i~~~-~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~ 497 (1008)
T KOG0950|consen 419 SLIYES-SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLW 497 (1008)
T ss_pred cccccc-hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHH
Confidence 111111 122222222 2221 2 34599999999999998865521
Q ss_pred -----------------------cCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCC--
Q 038133 537 -----------------------LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM-- 591 (671)
Q Consensus 537 -----------------------~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~-- 591 (671)
..+.++++|.|++.++|+.+...|++|-..|++||+.+..|+|+|...++|-+-+
T Consensus 498 ~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g 577 (1008)
T KOG0950|consen 498 ELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVG 577 (1008)
T ss_pred HHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccc
Confidence 1456889999999999999999999999999999999999999999998885533
Q ss_pred --CCCHHHHHHHhcccCCCCCc--cEEEEEecCCCchHHHHHH
Q 038133 592 --PGNIEMYTHRIGRTGRAGKT--GVATTFLTFHDTDVFYDLK 630 (671)
Q Consensus 592 --p~s~~~y~QriGR~gR~G~~--g~ai~~~~~~d~~~~~~l~ 630 (671)
+.+..+|.|++|||||+|.+ |.+++++...+...+..+.
T Consensus 578 ~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv 620 (1008)
T KOG0950|consen 578 REFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELV 620 (1008)
T ss_pred cchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHH
Confidence 34788999999999999854 8999999988876665444
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=5.2e-23 Score=205.47 Aligned_cols=304 Identities=19% Similarity=0.224 Sum_probs=210.9
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGL----QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.++|.|..+-..++ +..+.|+.|-||+|||... ...+.++.. +|..+.|..|....+..++..++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~----------~G~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN----------QGGRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh----------cCCeEEEecCcccchHHHHHHHH
Confidence 68888887665554 6789999999999999653 444444443 79999999999999998888777
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHh
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 428 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~ 428 (671)
.-+. ++.+.+++|+....- . ..+||+|.-.|+.+- ..++++||||+|-+--.. .+.+..-...
T Consensus 166 ~aF~--~~~I~~Lyg~S~~~f------r-~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~-d~~L~~Av~~ 228 (441)
T COG4098 166 QAFS--NCDIDLLYGDSDSYF------R-APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSD-DQSLQYAVKK 228 (441)
T ss_pred Hhhc--cCCeeeEecCCchhc------c-ccEEEEehHHHHHHH-------hhccEEEEeccccccccC-CHHHHHHHHH
Confidence 7544 477888998876321 2 578888877776653 358899999999752111 1122222222
Q ss_pred CCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhH------
Q 038133 429 MPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKF------ 502 (671)
Q Consensus 429 l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~------ 502 (671)
.. .....++.+|||.+...++-+... +-..+.++............+..+..-.|.
T Consensus 229 ar----------------k~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl 290 (441)
T COG4098 229 AR----------------KKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKL 290 (441)
T ss_pred hh----------------cccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccC
Confidence 11 124568999999988776544332 222333333333333333334444332222
Q ss_pred -HHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHc-C-CeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccc
Q 038133 503 -SRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKL-G-YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577 (671)
Q Consensus 503 -~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~-~-~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~G 577 (671)
..|...|... .+.|++||++++...+.++..|+.. . ..++.+|+. ...|.+.+++|++|++++||+|.+++||
T Consensus 291 ~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERG 368 (441)
T COG4098 291 PLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERG 368 (441)
T ss_pred CHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcc
Confidence 2566666654 3789999999999999999999543 3 356788885 3468888999999999999999999999
Q ss_pred CCCCCCcEEEEcCCC--CCHHHHHHHhcccCCCC--CccEEEEEecCCCch
Q 038133 578 IDIPDVAHVINYDMP--GNIEMYTHRIGRTGRAG--KTGVATTFLTFHDTD 624 (671)
Q Consensus 578 iDIp~v~~VI~~d~p--~s~~~y~QriGR~gR~G--~~g~ai~~~~~~d~~ 624 (671)
+.+|+|++.|.-.-. .+-+.++|..||+||.- -.|.++.|..--...
T Consensus 369 VTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 369 VTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred cccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 999999997754433 47889999999999974 357776665544433
No 103
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=2e-24 Score=206.91 Aligned_cols=167 Identities=30% Similarity=0.478 Sum_probs=143.1
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhc
Q 038133 275 SPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL 354 (671)
Q Consensus 275 ~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~ 354 (671)
||+|.++++.++++++++++||||+|||++++++++..+.. .....++|++|+++|+.|+...+..++...
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~---------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~ 71 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE---------GKDARVLIIVPTRALAEQQFERLRKFFSNT 71 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TSSSEEEEEESSHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc---------CCCceEEEEeeccccccccccccccccccc
Confidence 69999999999999999999999999999999999998864 123499999999999999999999999888
Q ss_pred CcEEEEEECCCchH-HHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCC
Q 038133 355 GIKVVSIVGGQSIE-EQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSN 433 (671)
Q Consensus 355 ~i~v~~~~gg~~~~-~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~ 433 (671)
++++..++|+.... .....+..+++|+|+||++|.+.+......+.++++|||||+|.+.+.++...+..++..+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 72 NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred ccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 88999999998865 44444556799999999999999988655677799999999999999888888888888874321
Q ss_pred CCCCCchhhhhhhhhcceEEEEeccCCHHHHH
Q 038133 434 LKPENEDEELDEKRIYRTTYMFSATMPPAVER 465 (671)
Q Consensus 434 ~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~ 465 (671)
..+++++|||+++.++.
T Consensus 152 ---------------~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 152 ---------------NIQIILLSATLPSNVEK 168 (169)
T ss_dssp ---------------TSEEEEEESSSTHHHHH
T ss_pred ---------------CCcEEEEeeCCChhHhh
Confidence 36799999999977664
No 104
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.1e-24 Score=235.05 Aligned_cols=305 Identities=23% Similarity=0.265 Sum_probs=224.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.+-|.|.+||..+-++..+++.|.|.+|||.++-.++...+. ..-+|+|..|-++|.+|-|+++..-+.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr-----------~kQRVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR-----------EKQRVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH-----------hcCeEEeeChhhhhcchhHHHHHHHhc
Confidence 678999999999999999999999999999888777666653 577899999999999999888877655
Q ss_pred hcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCC
Q 038133 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432 (671)
Q Consensus 353 ~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~ 432 (671)
. |...+|..+. ...+..+|+|.+.|-.+|-++...+..+.+||+||+|.|-|...+-.+...+-.+|.
T Consensus 198 D----VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~- 265 (1041)
T KOG0948|consen 198 D----VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPD- 265 (1041)
T ss_pred c----cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccc-
Confidence 4 4456666552 345779999999999999999989999999999999999887655555454445554
Q ss_pred CCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHH---hcCCCeEEEECCCCccccceeEEEE----------Eeccc
Q 038133 433 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARK---YLRNPVVVTIGTAGKATELISQHVV----------MMKES 499 (671)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~---~l~~p~~i~i~~~~~~~~~i~~~~~----------~~~~~ 499 (671)
....+++|||+|.+.+ ++.+ .-..|..|..-.. .+.. .|++. .+++.
T Consensus 266 ----------------~vr~VFLSATiPNA~q-FAeWI~~ihkQPcHVVYTdy-RPTP--LQHyifP~ggdGlylvVDek 325 (1041)
T KOG0948|consen 266 ----------------NVRFVFLSATIPNARQ-FAEWICHIHKQPCHVVYTDY-RPTP--LQHYIFPAGGDGLYLVVDEK 325 (1041)
T ss_pred ----------------cceEEEEeccCCCHHH-HHHHHHHHhcCCceEEeecC-CCCc--ceeeeecCCCCeeEEEEecc
Confidence 4678999999987644 4443 2234433222111 1110 11111 11111
Q ss_pred -----hhHHHHHHHH--------------------------------------HHhCCCcEEEEecChhhHHHHHHHHHH
Q 038133 500 -----EKFSRLQRLL--------------------------------------DELGDKTAIVFVNTKKNADMVAKNLDK 536 (671)
Q Consensus 500 -----~k~~~L~~ll--------------------------------------~~~~~~~iIVF~~~~~~~~~l~~~L~~ 536 (671)
+.+...+..| -.....|+|||+-+++.|+.+|-.+.+
T Consensus 326 ~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~k 405 (1041)
T KOG0948|consen 326 GKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSK 405 (1041)
T ss_pred cccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhcc
Confidence 1122222222 222345799999999999999887744
Q ss_pred c---------------------------------------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccc
Q 038133 537 L---------------------------------------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577 (671)
Q Consensus 537 ~---------------------------------------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~G 577 (671)
+ .-+++++|||+-+--++-+.-.|..|-++||.||..++.|
T Consensus 406 ldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiG 485 (1041)
T KOG0948|consen 406 LDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIG 485 (1041)
T ss_pred CcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhc
Confidence 2 1237899999999999999999999999999999999999
Q ss_pred CCCCCCcEEEE----cCC----CCCHHHHHHHhcccCCCCCc--cEEEEEecC
Q 038133 578 IDIPDVAHVIN----YDM----PGNIEMYTHRIGRTGRAGKT--GVATTFLTF 620 (671)
Q Consensus 578 iDIp~v~~VI~----~d~----p~s~~~y~QriGR~gR~G~~--g~ai~~~~~ 620 (671)
+|.|.-++|+- ||- .-|.-.|+|+.|||||.|.+ |.||++++.
T Consensus 486 LNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 486 LNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred cCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 99998766662 221 12677899999999999964 888888864
No 105
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=3e-24 Score=243.65 Aligned_cols=333 Identities=21% Similarity=0.289 Sum_probs=241.1
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhh
Q 038133 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHY 353 (671)
Q Consensus 274 p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~ 353 (671)
+.|+-.|.|-.+.-+..-|.-+.||-|||+++.+|++-..+ .|.-|-||+..--||.-=.+++..++..
T Consensus 137 m~~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL-----------~G~gVHvVTvNDYLA~RDaewm~p~y~f 205 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNAL-----------TGRGVHVVTVNDYLAQRDKEWMNPVFEF 205 (1025)
T ss_pred ccccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHH-----------cCCCcEEEeechHhhhhhHHHHHHHHHH
Confidence 33444445555555566789999999999999999977665 4777889999999999999999999999
Q ss_pred cCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcc------cccCCccEEEEcccchhh-cc---------
Q 038133 354 LGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRY------AVLNQCNYVVLDEADRMI-DM--------- 416 (671)
Q Consensus 354 ~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~------~~l~~~~~vViDEah~~~-~~--------- 416 (671)
+|++|.++..+.+..+... .-.|+|++||..-| .|+|..+. .+...+.|.||||+|.++ |.
T Consensus 206 lGLtVg~i~~~~~~~~Rr~--aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLIDeARTPLIISg 283 (1025)
T PRK12900 206 HGLSVGVILNTMRPEERRE--QYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLIDEARTPLIISG 283 (1025)
T ss_pred hCCeeeeeCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhhccccCceEEeC
Confidence 9999999988766655432 23699999998776 44443322 245778999999999753 10
Q ss_pred ----C-------ChHHHHHHHH---------------------------------------------hCCC---------
Q 038133 417 ----G-------FEPQVVGVLD---------------------------------------------AMPS--------- 431 (671)
Q Consensus 417 ----~-------f~~~i~~il~---------------------------------------------~l~~--------- 431 (671)
+ +.+.+..+.. .+..
T Consensus 284 p~~~~~~~~y~~~~~~~~~lv~~q~~l~~~~l~ea~~~~~~~~~~~~~~~~l~~~~~g~pknk~lik~L~~~~~~~~~~~ 363 (1025)
T PRK12900 284 PVPNADNSKFQEIKPWIEQLVRAQQNLVASYLTEAEKALKTKPNDFDAGLALLRVKRGQPKNSRFIKMLSQQGIAKLVQS 363 (1025)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhhhhhccCcchhHHHHHhhhhhhhhhhhh
Confidence 0 0001111000 0000
Q ss_pred -----------------C------------------------CCC---------CCC----------------------c
Q 038133 432 -----------------S------------------------NLK---------PEN----------------------E 439 (671)
Q Consensus 432 -----------------~------------------------~~~---------~~~----------------------~ 439 (671)
. .+. |+. +
T Consensus 364 ~e~~y~~dn~~~~~~~~~~~~~~iDek~~~v~LTe~G~~~~e~~~~~d~~~Fvlp~~~~~~~~ie~~~~l~~~~~~~~~~ 443 (1025)
T PRK12900 364 TENEYLKDNSSRMHEVDDELYFAVDEKANTIDLTDKGREFLSKLSHQDSDLFLLPDVGTEIAAIESDASLSAADKIKKKD 443 (1025)
T ss_pred hhhHhhhhhhhhccccCCCCeEEEEcCCCeeeecHhHHHHHHhhhccCchhhcccchhhhhhhhhcccccchhhhhhhhh
Confidence 0 000 000 0
Q ss_pred h---h-------------hhhh----------------------------------------------------------
Q 038133 440 D---E-------------ELDE---------------------------------------------------------- 445 (671)
Q Consensus 440 ~---~-------------~~~~---------------------------------------------------------- 445 (671)
. . .+..
T Consensus 444 ~l~~~~~~~~~~~h~i~qaLkA~~lf~kD~~YvV~dgkV~IVDe~TGRim~gRr~sdGLHQaIEaKE~v~i~~e~~t~At 523 (1025)
T PRK12900 444 EVYRLFAERSERLHNISQLLKAYSLFERDDEYVVQNGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMAT 523 (1025)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCccCCCCCcchHHHHHHHHHcCCCCCCCceeeee
Confidence 0 0 0000
Q ss_pred ------hhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcE
Q 038133 446 ------KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTA 517 (671)
Q Consensus 446 ------~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~i 517 (671)
.+.|..+.+||.|.......+..-|--+ ++.+++..+....-....++.+...|+..|...+... .+.|+
T Consensus 524 IT~QnfFr~Y~kLaGMTGTA~te~~Ef~~iY~L~--Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpV 601 (1025)
T PRK12900 524 ITIQNFFRLYKKLAGMTGTAETEASEFFEIYKLD--VVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPV 601 (1025)
T ss_pred eeHHHHHHhchhhcccCCCChhHHHHHHHHhCCc--EEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCE
Confidence 1234556677888777666666555443 3444444333333333445667778999999998654 58899
Q ss_pred EEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCC---CCc-----EEEEc
Q 038133 518 IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP---DVA-----HVINY 589 (671)
Q Consensus 518 IVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp---~v~-----~VI~~ 589 (671)
||||+|+..++.|+..|...++.+.++|+ .+.+|+..+..|..+...|+|||+++|||+||+ .|. +||++
T Consensus 602 LIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgt 679 (1025)
T PRK12900 602 LVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGS 679 (1025)
T ss_pred EEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCC
Confidence 99999999999999999999999999997 688999999999999999999999999999999 453 34899
Q ss_pred CCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 590 DMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 590 d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
+.|.|...|.|++||+||.|.+|.+++|++.+|.
T Consensus 680 erhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 680 ERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999999999999999999999999998874
No 106
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.3e-24 Score=231.96 Aligned_cols=310 Identities=19% Similarity=0.195 Sum_probs=224.3
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
..-+++-.+.+.++..++-+||.|+||||||...--.+...-.. ..|..+-|..|.|.-|.- ...+++
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt---------k~gk~IgcTQPRRVAAmS---VAaRVA 331 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT---------KGGKKIGCTQPRRVAAMS---VAARVA 331 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc---------cCCceEeecCcchHHHHH---HHHHHH
Confidence 34566777788888888889999999999998744444332221 245669999999999985 555667
Q ss_pred hhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCC
Q 038133 352 HYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 431 (671)
Q Consensus 352 ~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~ 431 (671)
..+|++...-+|.....+.. .....-|-++|.|+|+.-+..... |..+++|||||||.=. -.-+.+.+++.-+..
T Consensus 332 ~EMgvkLG~eVGYsIRFEdc--TSekTvlKYMTDGmLlREfL~epd-LasYSViiiDEAHERT--L~TDILfgLvKDIar 406 (902)
T KOG0923|consen 332 EEMGVKLGHEVGYSIRFEDC--TSEKTVLKYMTDGMLLREFLSEPD-LASYSVIIVDEAHERT--LHTDILFGLVKDIAR 406 (902)
T ss_pred HHhCcccccccceEEEeccc--cCcceeeeeecchhHHHHHhcccc-ccceeEEEeehhhhhh--hhhhHHHHHHHHHHh
Confidence 77887776666765554442 224567889999999887765444 8999999999999520 011223344333322
Q ss_pred CCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHH----HHH
Q 038133 432 SNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSR----LQR 507 (671)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~----L~~ 507 (671)
.+....+++.||||. .+.+...|-..|++...+... .+...+....+.+-+.+ +.+
T Consensus 407 --------------~RpdLKllIsSAT~D--AekFS~fFDdapIF~iPGRRy----PVdi~Yt~~PEAdYldAai~tVlq 466 (902)
T KOG0923|consen 407 --------------FRPDLKLLISSATMD--AEKFSAFFDDAPIFRIPGRRY----PVDIFYTKAPEADYLDAAIVTVLQ 466 (902)
T ss_pred --------------hCCcceEEeeccccC--HHHHHHhccCCcEEeccCccc----ceeeecccCCchhHHHHHHhhhee
Confidence 112577999999995 456666555566666555442 23334444444443333 233
Q ss_pred HHHHhCCCcEEEEecChhhHHHHHHHHHHc---------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccC
Q 038133 508 LLDELGDKTAIVFVNTKKNADMVAKNLDKL---------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGI 578 (671)
Q Consensus 508 ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~Gi 578 (671)
|....+.+.+|||....+.++.+...|... .+-++.+|+.++.+.+..+++--..|..+|++||++++..|
T Consensus 467 IH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSl 546 (902)
T KOG0923|consen 467 IHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSL 546 (902)
T ss_pred eEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhce
Confidence 333446789999999999998888887654 35688999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCC------------------CCCHHHHHHHhcccCCCCCccEEEEEec
Q 038133 579 DIPDVAHVINYDM------------------PGNIEMYTHRIGRTGRAGKTGVATTFLT 619 (671)
Q Consensus 579 DIp~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~g~ai~~~~ 619 (671)
.|++|.+||.-++ |.|-++-.||.||+||.| +|+|+.+++
T Consensus 547 TIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 547 TIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred eecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 9999999995443 447778899999999998 899999998
No 107
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=3.1e-24 Score=229.26 Aligned_cols=307 Identities=17% Similarity=0.196 Sum_probs=216.1
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhc
Q 038133 275 SPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL 354 (671)
Q Consensus 275 ~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~ 354 (671)
...+.+.+..+-.++-+|++|+||||||....-.++.- .......+.|..|.|..|.- .++.++..+
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed----------GY~~~GmIGcTQPRRvAAiS---VAkrVa~EM 424 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED----------GYADNGMIGCTQPRRVAAIS---VAKRVAEEM 424 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc----------ccccCCeeeecCchHHHHHH---HHHHHHHHh
Confidence 34444555556678889999999999998754444332 23355678899999999984 566677778
Q ss_pred CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchh-hccCChHHHHHHHHhCCCCC
Q 038133 355 GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRM-IDMGFEPQVVGVLDAMPSSN 433 (671)
Q Consensus 355 ~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~-~~~~f~~~i~~il~~l~~~~ 433 (671)
+.....-+|.....+... .....|-++|.|.|+.-.-.... |..+++||+||||.- ++. +.+.+++.....
T Consensus 425 ~~~lG~~VGYsIRFEdvT--~~~T~IkymTDGiLLrEsL~d~~-L~kYSviImDEAHERslNt---DilfGllk~~la-- 496 (1042)
T KOG0924|consen 425 GVTLGDTVGYSIRFEDVT--SEDTKIKYMTDGILLRESLKDRD-LDKYSVIIMDEAHERSLNT---DILFGLLKKVLA-- 496 (1042)
T ss_pred CCccccccceEEEeeecC--CCceeEEEeccchHHHHHhhhhh-hhheeEEEechhhhcccch---HHHHHHHHHHHH--
Confidence 777777777655444321 23467899999999776544443 788999999999952 221 233344443321
Q ss_pred CCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccc----hhHHHHHHHH
Q 038133 434 LKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES----EKFSRLQRLL 509 (671)
Q Consensus 434 ~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~----~k~~~L~~ll 509 (671)
.+....+|.+||||. ...++..|-+.|.+...|...+.. ..+...... ......+.|.
T Consensus 497 ------------rRrdlKliVtSATm~--a~kf~nfFgn~p~f~IpGRTyPV~----~~~~k~p~eDYVeaavkq~v~Ih 558 (1042)
T KOG0924|consen 497 ------------RRRDLKLIVTSATMD--AQKFSNFFGNCPQFTIPGRTYPVE----IMYTKTPVEDYVEAAVKQAVQIH 558 (1042)
T ss_pred ------------hhccceEEEeecccc--HHHHHHHhCCCceeeecCCccceE----EEeccCchHHHHHHHHhhheEee
Confidence 223677999999995 456777666688877666553322 111111111 1222223333
Q ss_pred HHhCCCcEEEEecChhhHHHHHHHHHHc----------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCC
Q 038133 510 DELGDKTAIVFVNTKKNADMVAKNLDKL----------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGID 579 (671)
Q Consensus 510 ~~~~~~~iIVF~~~~~~~~~l~~~L~~~----------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiD 579 (671)
...+.+.+|||....+.++..+..+... ++.+..+++.++++-+..+++....|..+++|||++++..|.
T Consensus 559 l~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLT 638 (1042)
T KOG0924|consen 559 LSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLT 638 (1042)
T ss_pred ccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhcee
Confidence 3345688999999988777766666432 578999999999999999999888899999999999999999
Q ss_pred CCCCcEEEEcCC------------------CCCHHHHHHHhcccCCCCCccEEEEEecCC
Q 038133 580 IPDVAHVINYDM------------------PGNIEMYTHRIGRTGRAGKTGVATTFLTFH 621 (671)
Q Consensus 580 Ip~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~g~ai~~~~~~ 621 (671)
||++.+||..+. |-|-+.--||.|||||.| +|.||.+|+..
T Consensus 639 i~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 639 IPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 999999996543 456777889999999997 89999999863
No 108
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=5.8e-22 Score=219.62 Aligned_cols=334 Identities=22% Similarity=0.248 Sum_probs=242.6
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|. .|++.|.-+.-.+++| -|..+.||+|||+++.+|++...+ .|..|.|++|+..||.|.++++.
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL-----------~G~~VhvvT~NdyLA~RDae~m~ 140 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYAL-----------QGRRVHVITVNDYLARRDAEWMG 140 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHH-----------cCCCeEEEcCCHHHHHHHHHHHH
Confidence 355 7889999888888877 477999999999999999987765 68999999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhc------ccccCCccEEEEcccchhh-cc----
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERR------YAVLNQCNYVVLDEADRMI-DM---- 416 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~------~~~l~~~~~vViDEah~~~-~~---- 416 (671)
.++..+|++|.++.++.+..+....+ .|+|+++|..-| .|+|..+ ......+.++||||+|.++ |.
T Consensus 141 ~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtP 218 (764)
T PRK12326 141 PLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVP 218 (764)
T ss_pred HHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCc
Confidence 99999999999999988766554433 599999998876 3444332 2245678999999999764 10
Q ss_pred ----------CChHHHHHHHHhCCCC-----------------------------CCC-CCC-ch-h-----h-------
Q 038133 417 ----------GFEPQVVGVLDAMPSS-----------------------------NLK-PEN-ED-E-----E------- 442 (671)
Q Consensus 417 ----------~f~~~i~~il~~l~~~-----------------------------~~~-~~~-~~-~-----~------- 442 (671)
.....+..+...+... ++- +.. .. . .
T Consensus 219 LiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~ 298 (764)
T PRK12326 219 LVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALL 298 (764)
T ss_pred eeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHH
Confidence 1111122222222110 000 000 00 0 0
Q ss_pred ---------------------------------------------------------hhhhhhcceEEEEeccCCHHHHH
Q 038133 443 ---------------------------------------------------------LDEKRIYRTTYMFSATMPPAVER 465 (671)
Q Consensus 443 ---------------------------------------------------------~~~~~~~~q~i~~SAT~~~~~~~ 465 (671)
..-.+.|..+.+||.|.....+.
T Consensus 299 ~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~E 378 (764)
T PRK12326 299 QRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQ 378 (764)
T ss_pred hcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHH
Confidence 00023466778899999888787
Q ss_pred HHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEE
Q 038133 466 LARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTT 543 (671)
Q Consensus 466 l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~ 543 (671)
+..-|--+ ++.+++..+..........+.....|+.++.+.+... .+.||||.+.++...+.++..|.+.|++..+
T Consensus 379 f~~iY~l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~v 456 (764)
T PRK12326 379 LRQFYDLG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVV 456 (764)
T ss_pred HHHHhCCc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCccee
Confidence 77766554 4445544333323333445666777888887776554 4899999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCC-CcEEEecccccccCCCC---------------CCcEEEEcCCCCCHHHHHHHhcccCC
Q 038133 544 LHGGKSQEQREISLEGFRTKR-YNVLVATDVAGRGIDIP---------------DVAHVINYDMPGNIEMYTHRIGRTGR 607 (671)
Q Consensus 544 lhg~~~~~~R~~~l~~F~~g~-~~VLVaT~~~~~GiDIp---------------~v~~VI~~d~p~s~~~y~QriGR~gR 607 (671)
+++.-...+ ..++. ..|. -.|.|||+++|||.||. +-=+||-...+.|..--.|..||+||
T Consensus 457 LNAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGR 533 (764)
T PRK12326 457 LNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGR 533 (764)
T ss_pred eccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccccc
Confidence 998744333 22222 2343 35999999999999996 23478889999999999999999999
Q ss_pred CCCccEEEEEecCCCc
Q 038133 608 AGKTGVATTFLTFHDT 623 (671)
Q Consensus 608 ~G~~g~ai~~~~~~d~ 623 (671)
.|.+|.+.+|++.+|.
T Consensus 534 QGDpGss~f~lSleDd 549 (764)
T PRK12326 534 QGDPGSSVFFVSLEDD 549 (764)
T ss_pred CCCCCceeEEEEcchh
Confidence 9999999999998873
No 109
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=5e-22 Score=225.19 Aligned_cols=331 Identities=21% Similarity=0.258 Sum_probs=235.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.|++.|. +-.+.-+..-|..+.||+|||+++++|++...+ .|..|.|++||..||.|.++++..++.
T Consensus 82 ~~ydVQl--iGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al-----------~G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 82 RHFDVQL--IGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL-----------SGKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred CcchhHH--HhhhHhccCccccccCCCCChHHHHHHHHHHHH-----------cCCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 5666665 444444556899999999999999999987664 689999999999999999999999999
Q ss_pred hcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhccc------ccCCccEEEEcccchhh-ccC-------
Q 038133 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRYA------VLNQCNYVVLDEADRMI-DMG------- 417 (671)
Q Consensus 353 ~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~~------~l~~~~~vViDEah~~~-~~~------- 417 (671)
.+|++|.++.++.+..+....+ .|+|++||+.-| .|+|..+.. +...++|+||||+|.++ |..
T Consensus 149 ~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 149 FLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred ccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeec
Confidence 9999999999988766654444 399999999987 455543322 34789999999999864 100
Q ss_pred --------ChHHHHHHHHhC-------------------------------------------CC----CCC-CCCCchh
Q 038133 418 --------FEPQVVGVLDAM-------------------------------------------PS----SNL-KPENEDE 441 (671)
Q Consensus 418 --------f~~~i~~il~~l-------------------------------------------~~----~~~-~~~~~~~ 441 (671)
....+..+...+ .. .++ .+.+...
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence 111111111111 00 000 0000000
Q ss_pred h------h----------------------------------------------------------------hhhhhcce
Q 038133 442 E------L----------------------------------------------------------------DEKRIYRT 451 (671)
Q Consensus 442 ~------~----------------------------------------------------------------~~~~~~~q 451 (671)
. + .-.+.|..
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence 0 0 00234566
Q ss_pred EEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHH
Q 038133 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADM 529 (671)
Q Consensus 452 ~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~ 529 (671)
+.+||.|.......+..-|--+ ++.+++..+....-....++.+...|+.++.+-+... .+.||||-+.|++..+.
T Consensus 387 LsGMTGTa~te~~Ef~~iY~l~--Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ 464 (913)
T PRK13103 387 LSGMTGTADTEAFEFRQIYGLD--VVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEH 464 (913)
T ss_pred hccCCCCCHHHHHHHHHHhCCC--EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHH
Confidence 7788999877777776666544 3444444333333333445667788888888777654 48999999999999999
Q ss_pred HHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC-CcEEEecccccccCCCC---------------------------
Q 038133 530 VAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR-YNVLVATDVAGRGIDIP--------------------------- 581 (671)
Q Consensus 530 l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~-~~VLVaT~~~~~GiDIp--------------------------- 581 (671)
|+..|...+++..+++......+-+. +. ..|. -.|.|||+++|||.||.
T Consensus 465 ls~~L~~~gi~h~VLNAk~~~~EA~I-Ia--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
T PRK13103 465 MSNLLKKEGIEHKVLNAKYHEKEAEI-IA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADW 541 (913)
T ss_pred HHHHHHHcCCcHHHhccccchhHHHH-HH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 99999999998888888644333222 22 3453 45999999999999994
Q ss_pred ----------CCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 582 ----------DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 582 ----------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
+-=+||-...+.|..--.|..||+||-|.+|.+.+|++.+|.
T Consensus 542 ~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 542 QKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 234688888999999999999999999999999999998774
No 110
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.90 E-value=6.2e-22 Score=214.96 Aligned_cols=334 Identities=20% Similarity=0.292 Sum_probs=221.4
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGL----QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.+++||.+.++.+. .|-++|+..++|.|||+. .++++.|+.... ...|| .||+||...|.+ |..++.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~------~~~GP-fLVi~P~StL~N-W~~Ef~ 237 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK------GIPGP-FLVIAPKSTLDN-WMNEFK 237 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc------CCCCC-eEEEeeHhhHHH-HHHHHH
Confidence 78999999988776 567899999999999965 344555554311 12355 699999999876 777788
Q ss_pred HHHhhcCcEEEEEECCCchHHHHH-H--HhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC--------
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGF-R--IRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG-------- 417 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~-~--l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~-------- 417 (671)
+|+. ++++++++|......... . .....+|+|+|++..+.. +..+.--.+.|+|||||||+-+..
T Consensus 238 rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr 313 (971)
T KOG0385|consen 238 RFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILR 313 (971)
T ss_pred HhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHHHHHH
Confidence 8876 478888888764332211 1 122589999999998654 333334567899999999986532
Q ss_pred -----------------ChHHHHHHHHhCCCCCCCCCCc-h------------hhhhh-------------------hhh
Q 038133 418 -----------------FEPQVVGVLDAMPSSNLKPENE-D------------EELDE-------------------KRI 448 (671)
Q Consensus 418 -----------------f~~~i~~il~~l~~~~~~~~~~-~------------~~~~~-------------------~~~ 448 (671)
-...+..++..+-+.-+....+ . ..... ...
T Consensus 314 ~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 314 EFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred HhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 1123333333332221111000 0 00000 000
Q ss_pred cceEEEEeccCCHHHHHH-----------------------------HHHhcCCCeEEEECCCCccccceeEEEEEeccc
Q 038133 449 YRTTYMFSATMPPAVERL-----------------------------ARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499 (671)
Q Consensus 449 ~~q~i~~SAT~~~~~~~l-----------------------------~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~ 499 (671)
...-+.+-.+|++.-..+ +++.+..|.....-.++ ......-+.+..+
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg---~pyttdehLv~nS 470 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG---PPYTTDEHLVTNS 470 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC---CCCCcchHHHhcC
Confidence 001111111222211111 22333344333221111 1111222344567
Q ss_pred hhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC---CcEEEecccc
Q 038133 500 EKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR---YNVLVATDVA 574 (671)
Q Consensus 500 ~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~---~~VLVaT~~~ 574 (671)
.|+..|..+|... .+++||||.......+.|.+++.-.++.++.+.|+++.++|..+++.|.... +-+|++|.++
T Consensus 471 GKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAG 550 (971)
T KOG0385|consen 471 GKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAG 550 (971)
T ss_pred cceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccc
Confidence 7888888888765 4899999999999999999999999999999999999999999999998754 4478999999
Q ss_pred cccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCC
Q 038133 575 GRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622 (671)
Q Consensus 575 ~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d 622 (671)
|-|||+..+++||.||..|++..-.|..-||.|.|+...+.+|-...+
T Consensus 551 GLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLite 598 (971)
T KOG0385|consen 551 GLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITE 598 (971)
T ss_pred ccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEecc
Confidence 999999999999999999999999999999999998765544443333
No 111
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.5e-21 Score=218.55 Aligned_cols=293 Identities=26% Similarity=0.401 Sum_probs=201.7
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.|| .|+..|+-....++.|+++-++||||.|||. |.+.|-.++. ..|.+++||+||+.|+.|.++.+.
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a----------~kgkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLA----------KKGKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHH----------hcCCeEEEEecCHHHHHHHHHHHH
Confidence 355 8999999999999999999999999999994 4444444443 368999999999999999999999
Q ss_pred HHHhhcC-cEEEE-EECCCchHH---HHHHHhc-CCeEEEEcchHHHHHHhhcccccC--CccEEEEcccchhhcc----
Q 038133 349 KFAHYLG-IKVVS-IVGGQSIEE---QGFRIRQ-GCEVVIATPGRLIDCLERRYAVLN--QCNYVVLDEADRMIDM---- 416 (671)
Q Consensus 349 k~~~~~~-i~v~~-~~gg~~~~~---~~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~--~~~~vViDEah~~~~~---- 416 (671)
+|+...+ ..+.. +++..+..+ ....+.+ +.+|+|+|.+-|..-+. .|. ++++|++|.+|.++-.
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e----~L~~~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE----ELSKLKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH----HhcccCCCEEEEccHHHHHhccccH
Confidence 9998776 44433 344433333 3334444 58999999877755443 244 6899999999987643
Q ss_pred -------CChHHH-------HHHHHhCCCCCCCCCCchhhh---------hhhhhcceEEEEeccCCHHHH--HHHHHhc
Q 038133 417 -------GFEPQV-------VGVLDAMPSSNLKPENEDEEL---------DEKRIYRTTYMFSATMPPAVE--RLARKYL 471 (671)
Q Consensus 417 -------~f~~~i-------~~il~~l~~~~~~~~~~~~~~---------~~~~~~~q~i~~SAT~~~~~~--~l~~~~l 471 (671)
||.... ..+...+.. -+...+.... .......+++..|||..|.-. .+.+..+
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~--~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYG--EKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 333321 111111110 0000000000 112345678999999876532 2334443
Q ss_pred CCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecC---hhhHHHHHHHHHHcCCeEEEecCCC
Q 038133 472 RNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNT---KKNADMVAKNLDKLGYRVTTLHGGK 548 (671)
Q Consensus 472 ~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~---~~~~~~l~~~L~~~~~~v~~lhg~~ 548 (671)
+ ..++.......++...+... .-...+.++++.. +...|||++. ++.++.++++|+.+|+++..+|++.
T Consensus 301 g----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~ 372 (1187)
T COG1110 301 G----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK 372 (1187)
T ss_pred C----CccCccchhhhheeeeeccC---ccHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc
Confidence 3 22333333333343333222 5567777888876 4578999999 9999999999999999999999843
Q ss_pred CHHHHHHHHHHhhcCCCcEEEec----ccccccCCCCC-CcEEEEcCCC
Q 038133 549 SQEQREISLEGFRTKRYNVLVAT----DVAGRGIDIPD-VAHVINYDMP 592 (671)
Q Consensus 549 ~~~~R~~~l~~F~~g~~~VLVaT----~~~~~GiDIp~-v~~VI~~d~p 592 (671)
+..++.|..|+++|||++ .++-||||+|. +.++|+++.|
T Consensus 373 -----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 -----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred -----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 567999999999999976 57889999997 7888988877
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=3.4e-22 Score=232.01 Aligned_cols=331 Identities=20% Similarity=0.190 Sum_probs=218.4
Q ss_pred CCcHHHHHHHHHHhCC---C-cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQ---R-DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~---r-d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.+++.|..++..+++. . .+++.||||+|||.+++++++..+... ....++++++.|+++++++++..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-------~~~~~r~i~vlP~~t~ie~~~~r~~ 267 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-------IKLKSRVIYVLPFRTIIEDMYRRAK 267 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-------ccccceEEEEccHHHHHHHHHHHHH
Confidence 4478899999888743 4 688999999999999999998877531 1258899999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHH--------------HhcCCeEEEEcchHHHHHHhhcccc----cCCccEEEEccc
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFR--------------IRQGCEVVIATPGRLIDCLERRYAV----LNQCNYVVLDEA 410 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~--------------l~~~~~IiI~Tp~~L~~~l~~~~~~----l~~~~~vViDEa 410 (671)
.++...++.....+|.....-.... ......++++||-............ .-..+++||||+
T Consensus 268 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 268 EIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred hhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 8776554433322332221111000 0001334444444433321111110 112468999999
Q ss_pred chhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCcc--ccc
Q 038133 411 DRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKA--TEL 488 (671)
Q Consensus 411 h~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~--~~~ 488 (671)
|.+.+......+..++..+... ...++++|||+|+........++.....+........ .+.
T Consensus 348 h~~~~~~~~~~l~~~i~~l~~~----------------g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~ 411 (733)
T COG1203 348 HLYADETMLAALLALLEALAEA----------------GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEP 411 (733)
T ss_pred HhhcccchHHHHHHHHHHHHhC----------------CCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccc
Confidence 9887664334444444444322 4569999999999999999888877665554322100 000
Q ss_pred eeEEEEEeccchh--HHHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhh----
Q 038133 489 ISQHVVMMKESEK--FSRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR---- 561 (671)
Q Consensus 489 i~~~~~~~~~~~k--~~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~---- 561 (671)
............. ......+.... .+.+++|.|||+..|..++..|+..+..++.+||.++..+|.+.+..+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~ 491 (733)
T COG1203 412 GLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFK 491 (733)
T ss_pred ccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHh
Confidence 0000000000000 01111111222 3789999999999999999999998888999999999999998887554
Q ss_pred cCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCC--CccEEEEEecCCCchHHHHH
Q 038133 562 TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG--KTGVATTFLTFHDTDVFYDL 629 (671)
Q Consensus 562 ~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G--~~g~ai~~~~~~d~~~~~~l 629 (671)
.+...|+|||++++.|+|| +.+.+|-== ..+.+.+||+||++|.| ..|.++.+............
T Consensus 492 ~~~~~IvVaTQVIEagvDi-dfd~mITe~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~ 558 (733)
T COG1203 492 QNEGFIVVATQVIEAGVDI-DFDVLITEL--APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYS 558 (733)
T ss_pred ccCCeEEEEeeEEEEEecc-ccCeeeecC--CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhh
Confidence 5678899999999999999 577777433 34889999999999999 56888888776554444333
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=4.5e-21 Score=216.23 Aligned_cols=319 Identities=22% Similarity=0.270 Sum_probs=215.5
Q ss_pred CCcHHHHHHHHHHhCC----CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQ----RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~----rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.+.+-|..|+..+... ...++.|.||||||.+|+-.+-..+. .|.++|||+|-..|..|+...+.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-----------~GkqvLvLVPEI~Ltpq~~~rf~ 266 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-----------QGKQVLVLVPEIALTPQLLARFK 266 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-----------cCCEEEEEeccccchHHHHHHHH
Confidence 5678889998888755 56899999999999999888877774 69999999999999999877777
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHH---h-cCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhh--c-cCChHH
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRI---R-QGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI--D-MGFEPQ 421 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l---~-~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~--~-~~f~~~ 421 (671)
.. +|.++..++++.+..+....+ . ..+.|||||-..| ...+.++++|||||.|.-. + .+....
T Consensus 267 ~r---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYh 336 (730)
T COG1198 267 AR---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYH 336 (730)
T ss_pred HH---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcC
Confidence 65 568899999998866544433 3 3589999997665 3468899999999999531 0 111111
Q ss_pred HHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEe-ccch
Q 038133 422 VVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM-KESE 500 (671)
Q Consensus 422 i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~-~~~~ 500 (671)
... .+..-.......+++-|||+ +++.+....-+....+.+.............++.+ .+..
T Consensus 337 ARd---------------vA~~Ra~~~~~pvvLgSATP--SLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~ 399 (730)
T COG1198 337 ARD---------------VAVLRAKKENAPVVLGSATP--SLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPL 399 (730)
T ss_pred HHH---------------HHHHHHHHhCCCEEEecCCC--CHHHHHhhhcCceEEEEccccccccCCCcceEEecccccc
Confidence 111 11222233357899999995 55555554333222333222211111122222222 2211
Q ss_pred hH-----HHHHHHHHHh--CCCcEEEEecChhhH----------------------------------------------
Q 038133 501 KF-----SRLQRLLDEL--GDKTAIVFVNTKKNA---------------------------------------------- 527 (671)
Q Consensus 501 k~-----~~L~~ll~~~--~~~~iIVF~~~~~~~---------------------------------------------- 527 (671)
.. ..|.+.+... .+.++|+|+|.+..+
T Consensus 400 ~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp 479 (730)
T COG1198 400 ETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCP 479 (730)
T ss_pred ccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCC
Confidence 11 3344444332 378999999987754
Q ss_pred --------------HHHHHHHHHc--CCeEEEecCCCCHH--HHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEc
Q 038133 528 --------------DMVAKNLDKL--GYRVTTLHGGKSQE--QREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINY 589 (671)
Q Consensus 528 --------------~~l~~~L~~~--~~~v~~lhg~~~~~--~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~ 589 (671)
+.+.+.|... +.++..+.++.+.. .-+..+..|.+|+.+|||.|.++..|.|+|++++|...
T Consensus 480 ~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl 559 (730)
T COG1198 480 ECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVL 559 (730)
T ss_pred CCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEE
Confidence 3333444333 55667777765543 45678999999999999999999999999999998866
Q ss_pred CCCC------------CHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHH
Q 038133 590 DMPG------------NIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629 (671)
Q Consensus 590 d~p~------------s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l 629 (671)
|... ....+.|..||+||++++|.+++-....+...+..+
T Consensus 560 ~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 560 DADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred echhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHH
Confidence 5543 355678999999999999988887776665444443
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=1.4e-20 Score=214.05 Aligned_cols=133 Identities=21% Similarity=0.312 Sum_probs=117.8
Q ss_pred chhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccc
Q 038133 499 SEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGR 576 (671)
Q Consensus 499 ~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~ 576 (671)
..++..|...+... .+.++||||+++..++.+++.|.+.|+.+..+||++++.+|..++..|+.|.++|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 44566666666553 4778999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEcC-----CCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHH
Q 038133 577 GIDIPDVAHVINYD-----MPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQM 632 (671)
Q Consensus 577 GiDIp~v~~VI~~d-----~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~ 632 (671)
|+|+|++++||++| .|.+..+|+||+||+||. ..|.|++|++..+......+...
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999999998 799999999999999998 68999999998765555555443
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=7.1e-21 Score=225.39 Aligned_cols=361 Identities=19% Similarity=0.204 Sum_probs=217.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEE
Q 038133 258 LTPELLRAVERVGYKNPSPIQMAAIP----LGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVM 333 (671)
Q Consensus 258 l~~~i~~~i~~~g~~~p~~~Q~~ai~----~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil 333 (671)
+.+.+...+...||. ++|.|.+.+. .+..++++++.||||+|||++|++|++.++. .+.+++|.
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-----------~~~~vvi~ 298 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-----------TEKPVVIS 298 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-----------CCCeEEEE
Confidence 344677788888995 8999998776 4457889999999999999999999988763 35689999
Q ss_pred ecchhhHHHHHH-HHHHHHhhcC--cEEEEEECCCchH-----------------H------------------------
Q 038133 334 APTRELAQQIEE-ETVKFAHYLG--IKVVSIVGGQSIE-----------------E------------------------ 369 (671)
Q Consensus 334 ~Ptr~La~Qi~~-~~~k~~~~~~--i~v~~~~gg~~~~-----------------~------------------------ 369 (671)
+||++|+.|+.. .+..+.+.++ ++++.+.|+.+.- .
T Consensus 299 t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~ 378 (850)
T TIGR01407 299 TNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNL 378 (850)
T ss_pred eCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccC
Confidence 999999999865 5666666555 7777776653210 0
Q ss_pred ------------------------------HHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC--
Q 038133 370 ------------------------------QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG-- 417 (671)
Q Consensus 370 ------------------------------~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~-- 417 (671)
........++|||+++..|+..+......+....++||||||++.+..
T Consensus 379 ~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~ 458 (850)
T TIGR01407 379 KGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAEN 458 (850)
T ss_pred CCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHH
Confidence 000011247899999999988775544446677899999999875310
Q ss_pred -----C-----hHHHHHH---------------HH---------------------------------------------
Q 038133 418 -----F-----EPQVVGV---------------LD--------------------------------------------- 427 (671)
Q Consensus 418 -----f-----~~~i~~i---------------l~--------------------------------------------- 427 (671)
+ ...+..+ +.
T Consensus 459 ~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 538 (850)
T TIGR01407 459 QLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLR 538 (850)
T ss_pred HhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 0 0000000 00
Q ss_pred ----h-----------CC--------CC-C---------CCCCCchhhhhh--hhhcceEEEEeccCCHH-HHHHHHHhc
Q 038133 428 ----A-----------MP--------SS-N---------LKPENEDEELDE--KRIYRTTYMFSATMPPA-VERLARKYL 471 (671)
Q Consensus 428 ----~-----------l~--------~~-~---------~~~~~~~~~~~~--~~~~~q~i~~SAT~~~~-~~~l~~~~l 471 (671)
. +. .. . ..|......+.. ......++++|||+... -.......+
T Consensus 539 ~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~l 618 (850)
T TIGR01407 539 KFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLL 618 (850)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhc
Confidence 0 00 00 0 000000000000 11245788999999742 122333333
Q ss_pred CC--CeEEEE-CCCCccccceeEEEE-Eec------cchhHHHHHHHHHH---hCCCcEEEEecChhhHHHHHHHHHHc-
Q 038133 472 RN--PVVVTI-GTAGKATELISQHVV-MMK------ESEKFSRLQRLLDE---LGDKTAIVFVNTKKNADMVAKNLDKL- 537 (671)
Q Consensus 472 ~~--p~~i~i-~~~~~~~~~i~~~~~-~~~------~~~k~~~L~~ll~~---~~~~~iIVF~~~~~~~~~l~~~L~~~- 537 (671)
+- .....+ .++........-.+. .+. ...-...+...|.. ..++++|||+++...++.++..|...
T Consensus 619 Gl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 619 GLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred CCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 32 222222 222211111100000 011 11112223333322 24678999999999999999999752
Q ss_pred ---CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcE--EEEcCCCC-------------------
Q 038133 538 ---GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAH--VINYDMPG------------------- 593 (671)
Q Consensus 538 ---~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~--VI~~d~p~------------------- 593 (671)
++.+ +..+.. ..|..+++.|++|+..||+||+.+++|||+|+..+ ||...+|.
T Consensus 699 ~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g 775 (850)
T TIGR01407 699 EFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEG 775 (850)
T ss_pred cccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhc
Confidence 3333 333333 47888999999999999999999999999998764 55555553
Q ss_pred -----------CHHHHHHHhcccCCCCCccEEEEEecCC--CchHHHHHHHHH
Q 038133 594 -----------NIEMYTHRIGRTGRAGKTGVATTFLTFH--DTDVFYDLKQML 633 (671)
Q Consensus 594 -----------s~~~y~QriGR~gR~G~~g~ai~~~~~~--d~~~~~~l~~~l 633 (671)
.+..+.|.+||+-|...+.-++++++.. ...+-..+.+.|
T Consensus 776 ~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 776 KNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred CCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 1233569999999998665456666544 223334444444
No 116
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=2.8e-20 Score=208.84 Aligned_cols=334 Identities=18% Similarity=0.241 Sum_probs=236.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|. .|++.|.-+--.+..| .|..+.||-|||+++.+|++-..+ .|..|-|++...-||.--.+++.
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL-----------~GkgVhVVTvNdYLA~RDae~mg 140 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL-----------TGKGVIVSTVNEYLAERDAEEMG 140 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh-----------cCCceEEEecchhhhhhhHHHHH
Confidence 355 6777777655555455 589999999999999999865443 58889999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcc------cccCCccEEEEcccchhh-cc----
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRY------AVLNQCNYVVLDEADRMI-DM---- 416 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~------~~l~~~~~vViDEah~~~-~~---- 416 (671)
.+...+|++|.++..+.+..+....+ .|+|+++|..-| .|+|..+. .+...+.|.||||+|.++ |.
T Consensus 141 ~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTP 218 (925)
T PRK12903 141 KVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTP 218 (925)
T ss_pred HHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCc
Confidence 99999999999999887766554433 599999999887 45554332 245778999999999754 10
Q ss_pred -----------CChHHHHHHHHhCCC----------------------------CCCCCCCc-hh---------------
Q 038133 417 -----------GFEPQVVGVLDAMPS----------------------------SNLKPENE-DE--------------- 441 (671)
Q Consensus 417 -----------~f~~~i~~il~~l~~----------------------------~~~~~~~~-~~--------------- 441 (671)
.+...+..+...+.. .++-.... ..
T Consensus 219 LIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~ 298 (925)
T PRK12903 219 LIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMK 298 (925)
T ss_pred ccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHh
Confidence 011111122221111 01000000 00
Q ss_pred -------------------------------------------------------hhhhhhhcceEEEEeccCCHHHHHH
Q 038133 442 -------------------------------------------------------ELDEKRIYRTTYMFSATMPPAVERL 466 (671)
Q Consensus 442 -------------------------------------------------------~~~~~~~~~q~i~~SAT~~~~~~~l 466 (671)
...-.+.|..+.+||+|.......+
T Consensus 299 rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef 378 (925)
T PRK12903 299 EDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEF 378 (925)
T ss_pred cCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHH
Confidence 0000334667788999988777777
Q ss_pred HHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEe
Q 038133 467 ARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTL 544 (671)
Q Consensus 467 ~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~l 544 (671)
..-|--+ ++.+++..+....-....++.....|+.++...+... .+.|+||.|.++...+.|+..|.+.|+...++
T Consensus 379 ~~iY~l~--Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vL 456 (925)
T PRK12903 379 IDIYNMR--VNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVL 456 (925)
T ss_pred HHHhCCC--EEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceee
Confidence 7666444 3444444332222222345567778888887766643 48899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCC-CcEEEecccccccCCCCCCc--------EEEEcCCCCCHHHHHHHhcccCCCCCccEEE
Q 038133 545 HGGKSQEQREISLEGFRTKR-YNVLVATDVAGRGIDIPDVA--------HVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 615 (671)
Q Consensus 545 hg~~~~~~R~~~l~~F~~g~-~~VLVaT~~~~~GiDIp~v~--------~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai 615 (671)
++.-. +++..+-. ..|. -.|.|||+++|||.||.--. +||....+.|..--.|..||+||.|.+|.+.
T Consensus 457 NAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~ 533 (925)
T PRK12903 457 NAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESR 533 (925)
T ss_pred cccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcce
Confidence 98643 33433332 4564 46999999999999996432 8999999999988999999999999999999
Q ss_pred EEecCCCc
Q 038133 616 TFLTFHDT 623 (671)
Q Consensus 616 ~~~~~~d~ 623 (671)
+|++.+|.
T Consensus 534 f~lSLeD~ 541 (925)
T PRK12903 534 FFISLDDQ 541 (925)
T ss_pred EEEecchH
Confidence 99998874
No 117
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.87 E-value=1.3e-20 Score=214.44 Aligned_cols=314 Identities=19% Similarity=0.229 Sum_probs=221.0
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH-HHHh
Q 038133 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV-KFAH 352 (671)
Q Consensus 274 p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~-k~~~ 352 (671)
-+..+.+.+..+.++..++|+|+||+|||......+|...... +....++|..|.|--|.-+++... +.+.
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~--------~~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES--------GAACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc--------CCCCeEEecCCchHHHHHHHHHHHHHhcc
Confidence 3566788889999999999999999999998877777766432 245669999999988887665443 3334
Q ss_pred hcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccch-hhccCChHHHHHHHHhCCC
Q 038133 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR-MIDMGFEPQVVGVLDAMPS 431 (671)
Q Consensus 353 ~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~-~~~~~f~~~i~~il~~l~~ 431 (671)
..|-.|..-++..+.. .....+++||.|.|+..+.. ...+..++.||+||+|. -++.+|--.+...+-...+
T Consensus 246 ~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 246 SLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred ccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 4454444444433321 22378999999999999987 44488999999999994 3344443332222222221
Q ss_pred CCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccc---------------eeEE----
Q 038133 432 SNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATEL---------------ISQH---- 492 (671)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~---------------i~~~---- 492 (671)
..++++||||+. .+.+...|.+.|.+...+........ ..+.
T Consensus 319 -----------------~LkvILMSAT~d--ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~ 379 (924)
T KOG0920|consen 319 -----------------DLKVILMSATLD--AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPE 379 (924)
T ss_pred -----------------CceEEEeeeecc--hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccc
Confidence 578999999997 45555555556655544433322210 0000
Q ss_pred --------EEEeccchhHHHHHHHHHHh----CCCcEEEEecChhhHHHHHHHHHHc-------CCeEEEecCCCCHHHH
Q 038133 493 --------VVMMKESEKFSRLQRLLDEL----GDKTAIVFVNTKKNADMVAKNLDKL-------GYRVTTLHGGKSQEQR 553 (671)
Q Consensus 493 --------~~~~~~~~k~~~L~~ll~~~----~~~~iIVF~~~~~~~~~l~~~L~~~-------~~~v~~lhg~~~~~~R 553 (671)
+.....+-....+.+++... ..+.+|||.+....+..+.+.|... .+-+..+|+.|+..++
T Consensus 380 ~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ 459 (924)
T KOG0920|consen 380 RSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQ 459 (924)
T ss_pred cCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHH
Confidence 00011112334444444332 3788999999999999999999753 2567889999999999
Q ss_pred HHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE--------cCCCC----------CHHHHHHHhcccCCCCCccEEE
Q 038133 554 EISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN--------YDMPG----------NIEMYTHRIGRTGRAGKTGVAT 615 (671)
Q Consensus 554 ~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~--------~d~p~----------s~~~y~QriGR~gR~G~~g~ai 615 (671)
..++.....|..+|++||++++.+|.|++|-+||. ||+-. |-+.-.||.||+||. ..|.||
T Consensus 460 ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy 538 (924)
T KOG0920|consen 460 QAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICY 538 (924)
T ss_pred HHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeE
Confidence 99999999999999999999999999999999995 44432 455668999999999 699999
Q ss_pred EEecCCC
Q 038133 616 TFLTFHD 622 (671)
Q Consensus 616 ~~~~~~d 622 (671)
.+++...
T Consensus 539 ~L~~~~~ 545 (924)
T KOG0920|consen 539 HLYTRSR 545 (924)
T ss_pred Eeechhh
Confidence 9998654
No 118
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=8.4e-22 Score=214.04 Aligned_cols=315 Identities=21% Similarity=0.231 Sum_probs=205.2
Q ss_pred HHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhc---C
Q 038133 279 MAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL---G 355 (671)
Q Consensus 279 ~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~---~ 355 (671)
++++..|..+--+||||+||||||...--.++..-...+ ...++..+-|.-|.|..|.-+.. +++..+ +
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~-----~~~~~gmIGITqPRRVAaiamAk---RVa~EL~~~~ 333 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASE-----QSSSPGMIGITQPRRVAAIAMAK---RVAFELGVLG 333 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCc-----cCCCCCeeeecCchHHHHHHHHH---HHHHHhccCc
Confidence 345666667777999999999999875444444322211 12245688999999998875543 333333 3
Q ss_pred cEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCC
Q 038133 356 IKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLK 435 (671)
Q Consensus 356 i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~ 435 (671)
-.|...+.... .+.....|.++|.|.|+.-++.+.+ |..++.|||||||.- .-..+.+.++|..+-....+
T Consensus 334 ~eVsYqIRfd~------ti~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHER--SvnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 334 SEVSYQIRFDG------TIGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHER--SVNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred cceeEEEEecc------ccCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhc--cchHHHHHHHHHHHHHHHHH
Confidence 34444333221 1223578999999999999988877 899999999999952 11223444555444221100
Q ss_pred CCCchhhhhhhhhcceEEEEeccCCHHHHHHH--HHhcC-CCeEEEECCCCccccceeEEEEEe----ccchhHHHHHHH
Q 038133 436 PENEDEELDEKRIYRTTYMFSATMPPAVERLA--RKYLR-NPVVVTIGTAGKATELISQHVVMM----KESEKFSRLQRL 508 (671)
Q Consensus 436 ~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~--~~~l~-~p~~i~i~~~~~~~~~i~~~~~~~----~~~~k~~~L~~l 508 (671)
.-.+. .......+|+||||+-- ..+. +.++. -|-++.++... ..+.-++..- .-..-+...+.|
T Consensus 405 ~~ke~----~~~kpLKLIIMSATLRV--sDFtenk~LFpi~pPlikVdARQ---fPVsIHF~krT~~DYi~eAfrKtc~I 475 (1172)
T KOG0926|consen 405 YYKEQ----CQIKPLKLIIMSATLRV--SDFTENKRLFPIPPPLIKVDARQ---FPVSIHFNKRTPDDYIAEAFRKTCKI 475 (1172)
T ss_pred Hhhhh----cccCceeEEEEeeeEEe--cccccCceecCCCCceeeeeccc---CceEEEeccCCCchHHHHHHHHHHHH
Confidence 00000 11124678999999843 2222 11211 22233333221 1122122111 123457778888
Q ss_pred HHHhCCCcEEEEecChhhHHHHHHHHHHc---------------------------------------------------
Q 038133 509 LDELGDKTAIVFVNTKKNADMVAKNLDKL--------------------------------------------------- 537 (671)
Q Consensus 509 l~~~~~~~iIVF~~~~~~~~~l~~~L~~~--------------------------------------------------- 537 (671)
.+.++.|.+|||+.....++.|++.|++.
T Consensus 476 H~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~ 555 (1172)
T KOG0926|consen 476 HKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQE 555 (1172)
T ss_pred hhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhh
Confidence 88889999999999999999999998331
Q ss_pred ------------------------------------------------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q 038133 538 ------------------------------------------------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569 (671)
Q Consensus 538 ------------------------------------------------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLV 569 (671)
..-|+.+++-++.+.+..+++.-..|..-++|
T Consensus 556 ~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVV 635 (1172)
T KOG0926|consen 556 LVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVV 635 (1172)
T ss_pred hhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEE
Confidence 11256677778888888888888889888999
Q ss_pred ecccccccCCCCCCcEEEEc--------CCCCCH----------HHHHHHhcccCCCCCccEEEEEecC
Q 038133 570 ATDVAGRGIDIPDVAHVINY--------DMPGNI----------EMYTHRIGRTGRAGKTGVATTFLTF 620 (671)
Q Consensus 570 aT~~~~~GiDIp~v~~VI~~--------d~p~s~----------~~y~QriGR~gR~G~~g~ai~~~~~ 620 (671)
||+++++.|.||++.+||.. |.-.++ ++--||.|||||.| .|.||.+|..
T Consensus 636 aTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 636 ATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred eccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 99999999999999999954 443333 34469999999998 8999999974
No 119
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.87 E-value=1.5e-21 Score=221.24 Aligned_cols=386 Identities=19% Similarity=0.273 Sum_probs=235.7
Q ss_pred CCChhh-hhccCHHHHHHHHhhcC---cccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh----C
Q 038133 216 HWSEKK-LEEMTERDWRIFREDFN---ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGL----Q 287 (671)
Q Consensus 216 ~~~~~~-~~~~~~~~~~~f~~~~~---i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il----~ 287 (671)
.|.... +..+-...|+.|...-+ ....|...-++...|..+...+..+.. ..++.||...++.++ .
T Consensus 315 TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~ 388 (1373)
T KOG0384|consen 315 TWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYK 388 (1373)
T ss_pred cccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCcccccc------chhhhhhcccchhHHHHHHh
Confidence 454433 33445666777765532 223344444444456555544443332 689999999998887 6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSI 367 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 367 (671)
+.++|+..++|.|||+.- +..|.++...- .-.|| .||+||...++. |-+.|....++++++++|....
T Consensus 389 ~~n~ILADEmgLgktvqt-i~fl~~l~~~~------~~~gp-flvvvplst~~~----W~~ef~~w~~mn~i~y~g~~~s 456 (1373)
T KOG0384|consen 389 RNNCILADEMGLGKTVQT-ITFLSYLFHSL------QIHGP-FLVVVPLSTITA----WEREFETWTDMNVIVYHGNLES 456 (1373)
T ss_pred cccceehhhcCCCcchHH-HHHHHHHHHhh------hccCC-eEEEeehhhhHH----HHHHHHHHhhhceeeeecchhH
Confidence 789999999999999542 23333333210 01344 699999988876 3444445557899999998876
Q ss_pred HHHHHHHh----c-----CCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC---------------------
Q 038133 368 EEQGFRIR----Q-----GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG--------------------- 417 (671)
Q Consensus 368 ~~~~~~l~----~-----~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~--------------------- 417 (671)
.+...... . ..+++++|++.++..-. .+.--.+.+++|||||++-+..
T Consensus 457 r~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgT 534 (1373)
T KOG0384|consen 457 RQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGT 534 (1373)
T ss_pred HHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCC
Confidence 66544332 1 37899999998854322 1222345789999999975321
Q ss_pred ----ChHHHHHHHHhCCCCCCCCCCchhh------------hhh--h----------------hhcceEEEEeccC----
Q 038133 418 ----FEPQVVGVLDAMPSSNLKPENEDEE------------LDE--K----------------RIYRTTYMFSATM---- 459 (671)
Q Consensus 418 ----f~~~i~~il~~l~~~~~~~~~~~~~------------~~~--~----------------~~~~q~i~~SAT~---- 459 (671)
-...+..++..+-+..+....+... +.. . +..-+++-+--|.
T Consensus 535 PlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~ 614 (1373)
T KOG0384|consen 535 PLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQ 614 (1373)
T ss_pred CccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHH
Confidence 1122333333333332222111000 000 0 0011111111110
Q ss_pred ------C--------------HHHHHH---HHHhcCCCeEEEECCCCccccceeE------EEEEeccchhHHHHHHHHH
Q 038133 460 ------P--------------PAVERL---ARKYLRNPVVVTIGTAGKATELISQ------HVVMMKESEKFSRLQRLLD 510 (671)
Q Consensus 460 ------~--------------~~~~~l---~~~~l~~p~~i~i~~~~~~~~~i~~------~~~~~~~~~k~~~L~~ll~ 510 (671)
. +...++ +++.+..|..+.-. .......... .-.++..+.|+..|..||.
T Consensus 615 yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~ga-ee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~ 693 (1373)
T KOG0384|consen 615 YYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGA-EEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLP 693 (1373)
T ss_pred HHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcH-HHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHH
Confidence 0 011110 12222223222111 0000000000 0001223344444445554
Q ss_pred Hh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhc---CCCcEEEecccccccCCCCCCcE
Q 038133 511 EL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT---KRYNVLVATDVAGRGIDIPDVAH 585 (671)
Q Consensus 511 ~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~---g~~~VLVaT~~~~~GiDIp~v~~ 585 (671)
.+ .+++||||...+...+.|+++|...+++...+.|++..+.|..+|+.|+. ..+.+|+||.+.|-|||+..+++
T Consensus 694 rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADT 773 (1373)
T KOG0384|consen 694 RLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADT 773 (1373)
T ss_pred HHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccce
Confidence 43 47899999999999999999999999999999999999999999999986 34669999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHhcccCCCCCcc--EEEEEecCCC
Q 038133 586 VINYDMPGNIEMYTHRIGRTGRAGKTG--VATTFLTFHD 622 (671)
Q Consensus 586 VI~~d~p~s~~~y~QriGR~gR~G~~g--~ai~~~~~~d 622 (671)
||+||..|++..-.|+..||.|.|++. .+|.|+|...
T Consensus 774 VIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 774 VIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred EEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 999999999999999999999999874 5677777654
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=1.8e-19 Score=206.54 Aligned_cols=147 Identities=21% Similarity=0.310 Sum_probs=127.7
Q ss_pred hhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccc
Q 038133 500 EKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577 (671)
Q Consensus 500 ~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~G 577 (671)
.++..|...|... .+.++||||+++..++.++..|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 4455666666543 37789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCC-----CCCHHHHHHHhcccCCCCCccEEEEEecC---------CCchHHHHHHHHHHhcCCCCChh
Q 038133 578 IDIPDVAHVINYDM-----PGNIEMYTHRIGRTGRAGKTGVATTFLTF---------HDTDVFYDLKQMLIQSNSPVPPE 643 (671)
Q Consensus 578 iDIp~v~~VI~~d~-----p~s~~~y~QriGR~gR~G~~g~ai~~~~~---------~d~~~~~~l~~~l~~~~~~vp~~ 643 (671)
+|+|++++||++|. |.+...|+||+||+||. ..|.|++|++. .+.....++...+......+|..
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 588 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKT 588 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChh
Confidence 99999999999885 78999999999999996 78999999985 45566666677777778888876
Q ss_pred HHhc
Q 038133 644 LAKH 647 (671)
Q Consensus 644 L~~~ 647 (671)
..+-
T Consensus 589 ~~~~ 592 (652)
T PRK05298 589 IKKK 592 (652)
T ss_pred HHHH
Confidence 6554
No 121
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=1.1e-19 Score=209.05 Aligned_cols=318 Identities=17% Similarity=0.155 Sum_probs=191.6
Q ss_pred CCcHHHHHHHHHHh----C------CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 273 NPSPIQMAAIPLGL----Q------QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~------~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
-++++|..|+..+. + .+..+++++||||||++++..+...+.. ...+++|||||+.+|..|
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~---------~~~~~vl~lvdR~~L~~Q 308 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL---------LKNPKVFFVVDRRELDYQ 308 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh---------cCCCeEEEEECcHHHHHH
Confidence 37889999998764 2 2569999999999998877766554421 257899999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhc-CCeEEEEcchHHHHHHhhccccc--CC-ccEEEEcccchhhccCC
Q 038133 343 IEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQ-GCEVVIATPGRLIDCLERRYAVL--NQ-CNYVVLDEADRMIDMGF 418 (671)
Q Consensus 343 i~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l--~~-~~~vViDEah~~~~~~f 418 (671)
+.+.+..+... . ..+..+.......+.. ...|+|+|.+.|...+......+ .. -.+||+||||+.....+
T Consensus 309 ~~~~f~~~~~~----~--~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~ 382 (667)
T TIGR00348 309 LMKEFQSLQKD----C--AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGEL 382 (667)
T ss_pred HHHHHHhhCCC----C--CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHH
Confidence 99998887431 1 1122233333233333 47899999999976443321111 11 12899999998743222
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhc----CCCeEEEECCCCccccceeEEEE
Q 038133 419 EPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYL----RNPVVVTIGTAGKATELISQHVV 494 (671)
Q Consensus 419 ~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l----~~p~~i~i~~~~~~~~~i~~~~~ 494 (671)
. ..+...+|. ...++||||+...........+ +++.. ...-.....+...-.+.
T Consensus 383 ~---~~l~~~~p~------------------a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~-~Y~~~~AI~dG~~~~i~ 440 (667)
T TIGR00348 383 A---KNLKKALKN------------------ASFFGFTGTPIFKKDRDTSLTFAYVFGRYLH-RYFITDAIRDGLTVKID 440 (667)
T ss_pred H---HHHHhhCCC------------------CcEEEEeCCCcccccccccccccCCCCCeEE-EeeHHHHhhcCCeeeEE
Confidence 2 222244543 4589999998532111111111 12211 11111001110000000
Q ss_pred ----E----ecc--------------------ch---------h----------HHH-HHHHHHHh------CCCcEEEE
Q 038133 495 ----M----MKE--------------------SE---------K----------FSR-LQRLLDEL------GDKTAIVF 520 (671)
Q Consensus 495 ----~----~~~--------------------~~---------k----------~~~-L~~ll~~~------~~~~iIVF 520 (671)
. +.. .. + ... ...++... .+++++||
T Consensus 441 Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv 520 (667)
T TIGR00348 441 YEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVV 520 (667)
T ss_pred EEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEE
Confidence 0 000 00 0 001 11122221 14789999
Q ss_pred ecChhhHHHHHHHHHHc-----CCeEEEecCCCCHH---------------------HHHHHHHHhhc-CCCcEEEeccc
Q 038133 521 VNTKKNADMVAKNLDKL-----GYRVTTLHGGKSQE---------------------QREISLEGFRT-KRYNVLVATDV 573 (671)
Q Consensus 521 ~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~---------------------~R~~~l~~F~~-g~~~VLVaT~~ 573 (671)
|.++..|..+++.|.+. +...+++++..+.+ ....+++.|++ +.++|||++++
T Consensus 521 ~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdm 600 (667)
T TIGR00348 521 AISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDM 600 (667)
T ss_pred EecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcc
Confidence 99999999999988765 24556666654332 22468889976 67899999999
Q ss_pred ccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCC-C--Cc-cEEEEEecCCCchHHHHHHHHH
Q 038133 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA-G--KT-GVATTFLTFHDTDVFYDLKQML 633 (671)
Q Consensus 574 ~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~-G--~~-g~ai~~~~~~d~~~~~~l~~~l 633 (671)
+.+|+|.|.+++++...+..+. .++|.+||+.|. + +. |..+-|+.. ...|.+.+
T Consensus 601 llTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g~-----~~~l~~Al 658 (667)
T TIGR00348 601 LLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRGL-----EKSLIDAL 658 (667)
T ss_pred cccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcCh-----HHHHHHHH
Confidence 9999999999999977766654 589999999994 3 32 555555443 34555544
No 122
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.85 E-value=2.1e-19 Score=203.09 Aligned_cols=292 Identities=20% Similarity=0.202 Sum_probs=195.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|+ .|++.|.-+ .+.-+...|..+.||.|||+++++|++-..+ .|..|.|++++..||.+-++++.
T Consensus 73 lG~-r~ydvQlig--~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL-----------~G~~VhVvT~NdyLA~RD~e~m~ 138 (870)
T CHL00122 73 LGL-RHFDVQLIG--GLVLNDGKIAEMKTGEGKTLVATLPAYLNAL-----------TGKGVHIVTVNDYLAKRDQEWMG 138 (870)
T ss_pred hCC-CCCchHhhh--hHhhcCCccccccCCCCchHHHHHHHHHHHh-----------cCCceEEEeCCHHHHHHHHHHHH
Confidence 355 477777644 4444567899999999999999999965443 58889999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcc------cccCCccEEEEcccchhh-ccC---
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRY------AVLNQCNYVVLDEADRMI-DMG--- 417 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~------~~l~~~~~vViDEah~~~-~~~--- 417 (671)
.++..+|++|.++.++.+..+..... .|+|+++|..-| .|+|..+. .....+.++||||+|.++ |..
T Consensus 139 pvy~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTP 216 (870)
T CHL00122 139 QIYRFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTP 216 (870)
T ss_pred HHHHHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCc
Confidence 99999999999999988876654433 589999999765 34443322 245678999999999764 100
Q ss_pred ------------ChHHHHHHHHhCCC-----------------------------CCCCC-CCchh--------------
Q 038133 418 ------------FEPQVVGVLDAMPS-----------------------------SNLKP-ENEDE-------------- 441 (671)
Q Consensus 418 ------------f~~~i~~il~~l~~-----------------------------~~~~~-~~~~~-------------- 441 (671)
....+..+...+.. .++-. ...+.
T Consensus 217 LiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~ 296 (870)
T CHL00122 217 LIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFF 296 (870)
T ss_pred eeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHh
Confidence 00011111111110 00000 00000
Q ss_pred -------------------------------------------------------hhhhhhhcceEEEEeccCCHHHHHH
Q 038133 442 -------------------------------------------------------ELDEKRIYRTTYMFSATMPPAVERL 466 (671)
Q Consensus 442 -------------------------------------------------------~~~~~~~~~q~i~~SAT~~~~~~~l 466 (671)
...-.+.|..+.+||.|.......+
T Consensus 297 ~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef 376 (870)
T CHL00122 297 KNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEF 376 (870)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHH
Confidence 0000234667888999997766666
Q ss_pred HHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEe
Q 038133 467 ARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTL 544 (671)
Q Consensus 467 ~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~l 544 (671)
...|--+ ++.+++..+....-....++.+...|+.++.+-+... .+.||||-|.++...+.++..|...|++..++
T Consensus 377 ~~iY~l~--vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vL 454 (870)
T CHL00122 377 EKIYNLE--VVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLL 454 (870)
T ss_pred HHHhCCC--EEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCcccee
Confidence 6655444 3344444333322223445566777887766665443 48899999999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHhhcCC-CcEEEecccccccCCC
Q 038133 545 HGGKSQEQRE-ISLEGFRTKR-YNVLVATDVAGRGIDI 580 (671)
Q Consensus 545 hg~~~~~~R~-~~l~~F~~g~-~~VLVaT~~~~~GiDI 580 (671)
++.-....++ .++.. .|. -.|.|||+++|||.||
T Consensus 455 NAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 455 NAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred eCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCe
Confidence 9863222233 23332 344 4599999999999998
No 123
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.85 E-value=3.7e-20 Score=204.77 Aligned_cols=296 Identities=20% Similarity=0.260 Sum_probs=191.1
Q ss_pred CCCCCcHHHHHHHHHHh----CCC-cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHH
Q 038133 270 GYKNPSPIQMAAIPLGL----QQR-DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE 344 (671)
Q Consensus 270 g~~~p~~~Q~~ai~~il----~~r-d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~ 344 (671)
+-..|++||..||..+. +|+ .+|+++.||+|||.+++..+...+. .+..+++|+|+.+++|+.|.+
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r---------~~~~KRVLFLaDR~~Lv~QA~ 232 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK---------SGWVKRVLFLADRNALVDQAY 232 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh---------cchhheeeEEechHHHHHHHH
Confidence 34478999999998775 443 4999999999999876554444332 246789999999999999999
Q ss_pred HHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc-----ccccCCccEEEEcccchhhccCCh
Q 038133 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR-----YAVLNQCNYVVLDEADRMIDMGFE 419 (671)
Q Consensus 345 ~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~-----~~~l~~~~~vViDEah~~~~~~f~ 419 (671)
..+..+.... -.+..+.+... ...|+|.|+|++.+...+... ......+++||+|||||-+-..
T Consensus 233 ~af~~~~P~~-~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~-- 301 (875)
T COG4096 233 GAFEDFLPFG-TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSE-- 301 (875)
T ss_pred HHHHHhCCCc-cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhh--
Confidence 8888875532 22223322111 115899999999998877554 1234558999999999954333
Q ss_pred HHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhc-CCCe------------------EEEEC
Q 038133 420 PQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYL-RNPV------------------VVTIG 480 (671)
Q Consensus 420 ~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l-~~p~------------------~i~i~ 480 (671)
...|++++.. -++++|||+...++.-.-.|+ +.|. ++.+.
T Consensus 302 --~~~I~dYFdA-------------------~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~ 360 (875)
T COG4096 302 --WSSILDYFDA-------------------ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRID 360 (875)
T ss_pred --hHHHHHHHHH-------------------HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEe
Confidence 2355555532 133347776554333333333 3332 22221
Q ss_pred C----CCccccc-----------e---eEEEEEec------cchhH----HHHHHHHHH--hC--CCcEEEEecChhhHH
Q 038133 481 T----AGKATEL-----------I---SQHVVMMK------ESEKF----SRLQRLLDE--LG--DKTAIVFVNTKKNAD 528 (671)
Q Consensus 481 ~----~~~~~~~-----------i---~~~~~~~~------~~~k~----~~L~~ll~~--~~--~~~iIVF~~~~~~~~ 528 (671)
. .+..... + .+.+.... -.... ..+.+.+.. .+ .+++||||.+..+|+
T Consensus 361 ~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe 440 (875)
T COG4096 361 TDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAE 440 (875)
T ss_pred eeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHH
Confidence 1 1100000 0 00000000 00011 223334443 12 468999999999999
Q ss_pred HHHHHHHHc-----CCeEEEecCCCCHHHHHHHHHHhhc--CCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHH
Q 038133 529 MVAKNLDKL-----GYRVTTLHGGKSQEQREISLEGFRT--KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHR 601 (671)
Q Consensus 529 ~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~l~~F~~--g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~Qr 601 (671)
.+...|... +--+..+.|.-.+.+ ..+..|.. .-..|.|+.+++.+|||+|.|-.+|++..-.|...|.|+
T Consensus 441 ~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QM 518 (875)
T COG4096 441 RIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQM 518 (875)
T ss_pred HHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHH
Confidence 999999765 344667777655443 34566654 335688899999999999999999999999999999999
Q ss_pred hcccCCC
Q 038133 602 IGRTGRA 608 (671)
Q Consensus 602 iGR~gR~ 608 (671)
+||+-|.
T Consensus 519 vGRGTRl 525 (875)
T COG4096 519 VGRGTRL 525 (875)
T ss_pred hcCcccc
Confidence 9999995
No 124
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.4e-19 Score=197.90 Aligned_cols=330 Identities=19% Similarity=0.207 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGL----QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.+.|||+.++..+. ++...|+..++|.|||+.. +..|..+.... .--..+|||||.. |..||..+|.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~-------k~~~paLIVCP~T-ii~qW~~E~~ 275 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSG-------KLTKPALIVCPAT-IIHQWMKEFQ 275 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcc-------cccCceEEEccHH-HHHHHHHHHH
Confidence 56799999998886 5667899999999999543 22333333211 1226699999986 5557888888
Q ss_pred HHHhhcCcEEEEEECCCch---------HHHHH----HHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc
Q 038133 349 KFAHYLGIKVVSIVGGQSI---------EEQGF----RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~---------~~~~~----~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~ 415 (671)
.+... ++|..++|..+. ..... ....+..|+|+|+..+-- ....+.-..++|+|+||.|++-+
T Consensus 276 ~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 276 TWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred HhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccC
Confidence 87553 577777765441 00001 111246799999988732 22233355689999999998754
Q ss_pred cC-------------------------ChHHHHHHHHhCCCCCCCCCCchh----------------------------h
Q 038133 416 MG-------------------------FEPQVVGVLDAMPSSNLKPENEDE----------------------------E 442 (671)
Q Consensus 416 ~~-------------------------f~~~i~~il~~l~~~~~~~~~~~~----------------------------~ 442 (671)
.+ -...+..+++...+..+....... .
T Consensus 352 pns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 352 PNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred CccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 33 122333444444322211100000 0
Q ss_pred hh----------------h---hhhcceEEEEeccCCHHHHHHHHHhc--------------------------CCCeEE
Q 038133 443 LD----------------E---KRIYRTTYMFSATMPPAVERLARKYL--------------------------RNPVVV 477 (671)
Q Consensus 443 ~~----------------~---~~~~~q~i~~SAT~~~~~~~l~~~~l--------------------------~~p~~i 477 (671)
+. . ....-++++++-| +.-.++...|+ ..|..+
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT--~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLT--KLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEecc--HHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccc
Confidence 00 0 0012234444433 33333333333 222222
Q ss_pred EECCCCccccceeEEE---EEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHH-HcCCeEEEecCCCCHH
Q 038133 478 TIGTAGKATELISQHV---VMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLD-KLGYRVTTLHGGKSQE 551 (671)
Q Consensus 478 ~i~~~~~~~~~i~~~~---~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~-~~~~~v~~lhg~~~~~ 551 (671)
.-.. +...+.. -.+..+.|...+..+|... .+.++|+|..++...+.|...|. ..++.++.+.|..+..
T Consensus 510 ~~~~-----~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~ 584 (923)
T KOG0387|consen 510 DRRD-----EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAA 584 (923)
T ss_pred cCcc-----cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccc
Confidence 1110 0000000 2234567889999988765 37799999999999999999999 5799999999999999
Q ss_pred HHHHHHHHhhcCCC-c-EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCcc--EEEEEecCCC
Q 038133 552 QREISLEGFRTKRY-N-VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG--VATTFLTFHD 622 (671)
Q Consensus 552 ~R~~~l~~F~~g~~-~-VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g--~ai~~~~~~d 622 (671)
.|..+++.|+++.. . +|++|.+.|-|+|+.+++.||.||+.|+++.-.|..-|+.|.|++. .+|.|++...
T Consensus 585 ~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 585 LRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred hhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 99999999998763 3 6678899999999999999999999999999999999999999763 4556666543
No 125
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.82 E-value=8.8e-19 Score=170.95 Aligned_cols=187 Identities=41% Similarity=0.623 Sum_probs=153.6
Q ss_pred cCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQ-RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~-rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
.++..|+++|.++++.++.. +.++++++||+|||.+++.+++..+.. .....+||++|+..++.|+...+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~---------~~~~~~l~~~p~~~~~~~~~~~~ 74 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR---------GKGKRVLVLVPTRELAEQWAEEL 74 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc---------cCCCcEEEEeCCHHHHHHHHHHH
Confidence 46778999999999999998 999999999999999999999888754 12478999999999999999999
Q ss_pred HHHHhhcCcEEEEEECCCchHHHHHHHhcCC-eEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHH
Q 038133 348 VKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC-EVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVL 426 (671)
Q Consensus 348 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~-~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il 426 (671)
..++...........++.........+..++ +|+++|++.+.+.+.........+++||+||+|.+....+...+..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 75 KKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 8887665545566666666555555566666 999999999999988766667789999999999998767778888888
Q ss_pred HhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECC
Q 038133 427 DAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT 481 (671)
Q Consensus 427 ~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~ 481 (671)
..++. ...++++|||++......+..++.....+..+.
T Consensus 155 ~~~~~-----------------~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 155 KLLPK-----------------NVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HhCCc-----------------cceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 77733 467899999999999998888888666655543
No 126
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=3e-19 Score=185.38 Aligned_cols=328 Identities=17% Similarity=0.193 Sum_probs=213.6
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCe
Q 038133 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPY 329 (671)
Q Consensus 250 i~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~ 329 (671)
+..|.....++.-.+.+++---..-+.++...+..+.+++.++++|+||||||...--..+.+... ....
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~----------~~~~ 93 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS----------HLTG 93 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh----------hccc
Confidence 444555566666666555443334455566667777788999999999999998755555555543 3366
Q ss_pred EEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 330 AVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 330 vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
+.+..|.|.-|.+ ...+.+..+++...--+|.....+... ....-.-++|.++|+.-.-.... +..+++||+||
T Consensus 94 v~CTQprrvaams---va~RVadEMDv~lG~EVGysIrfEdC~--~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDe 167 (699)
T KOG0925|consen 94 VACTQPRRVAAMS---VAQRVADEMDVTLGEEVGYSIRFEDCT--SPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDE 167 (699)
T ss_pred eeecCchHHHHHH---HHHHHHHHhccccchhccccccccccC--ChhHHHHHhcchHHHHHHhhCcc-cccccEEEech
Confidence 8899999999986 456677778777777777655443310 00111335777777665555444 88999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccce
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i 489 (671)
||.-. -..+.+.+++...... +....++.+|||+.. ..+ ..|+.++-.+.+.... .+
T Consensus 168 ahERt--lATDiLmGllk~v~~~--------------rpdLk~vvmSatl~a--~Kf-q~yf~n~Pll~vpg~~----Pv 224 (699)
T KOG0925|consen 168 AHERT--LATDILMGLLKEVVRN--------------RPDLKLVVMSATLDA--EKF-QRYFGNAPLLAVPGTH----PV 224 (699)
T ss_pred hhhhh--HHHHHHHHHHHHHHhh--------------CCCceEEEeecccch--HHH-HHHhCCCCeeecCCCC----ce
Confidence 99520 0112334444433221 115779999999853 333 4555655555554321 12
Q ss_pred eEEEEEeccch----hHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc---------CCeEEEecCCCCHHHHHHH
Q 038133 490 SQHVVMMKESE----KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL---------GYRVTTLHGGKSQEQREIS 556 (671)
Q Consensus 490 ~~~~~~~~~~~----k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~~~~~~R~~~ 556 (671)
+-.+..-.+.+ -...+.+|......+.+|||....+.++..|+.+... ...|..+| +.++..+
T Consensus 225 Ei~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~i 300 (699)
T KOG0925|consen 225 EIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRI 300 (699)
T ss_pred EEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccc
Confidence 22222112222 2333444444445889999999999999999988743 34677777 4444444
Q ss_pred HHHhhc---C--CCcEEEecccccccCCCCCCcEEEEcCC------------------CCCHHHHHHHhcccCCCCCccE
Q 038133 557 LEGFRT---K--RYNVLVATDVAGRGIDIPDVAHVINYDM------------------PGNIEMYTHRIGRTGRAGKTGV 613 (671)
Q Consensus 557 l~~F~~---g--~~~VLVaT~~~~~GiDIp~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~g~ 613 (671)
++.... | ..+|+|+|++++..+.|++|.+||.-++ |.|..+-.||.||+||. .+|.
T Consensus 301 Fep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGk 379 (699)
T KOG0925|consen 301 FEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGK 379 (699)
T ss_pred cCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCc
Confidence 443332 2 2469999999999999999999995543 55788899999999998 6999
Q ss_pred EEEEecCC
Q 038133 614 ATTFLTFH 621 (671)
Q Consensus 614 ai~~~~~~ 621 (671)
|+.+++.+
T Consensus 380 cfrLYte~ 387 (699)
T KOG0925|consen 380 CFRLYTEE 387 (699)
T ss_pred eEEeecHH
Confidence 99999854
No 127
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.6e-17 Score=175.07 Aligned_cols=192 Identities=20% Similarity=0.238 Sum_probs=136.8
Q ss_pred hcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHH--hCCCcEEEEecChh
Q 038133 448 IYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE--LGDKTAIVFVNTKK 525 (671)
Q Consensus 448 ~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~--~~~~~iIVF~~~~~ 525 (671)
...|++.+|||+.+--..... +.-+.-.+.+.+.... .+..-+.....+-|...+.. ..+.++||-+-+++
T Consensus 385 ~~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP----~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 385 KIPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDP----EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred hcCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCC----ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 467999999998664322211 1111122222222221 12222333344444444443 24789999999999
Q ss_pred hHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCC-----CHHHHHH
Q 038133 526 NADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-----NIEMYTH 600 (671)
Q Consensus 526 ~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~-----s~~~y~Q 600 (671)
.++.|.++|.+.|+++..+|++...-+|-.++..++.|.++|||.-+++-+|||+|.|++|..+|..+ |-.+++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888654 8889999
Q ss_pred HhcccCCCCCccEEEEEecCCCchHH---------HHHHHHHHhcCCCCChhHHhc
Q 038133 601 RIGRTGRAGKTGVATTFLTFHDTDVF---------YDLKQMLIQSNSPVPPELAKH 647 (671)
Q Consensus 601 riGR~gR~G~~g~ai~~~~~~d~~~~---------~~l~~~l~~~~~~vp~~L~~~ 647 (671)
-||||.|- -.|.++++.+.-....- ..+...+.+....+|.-+.+.
T Consensus 538 tIGRAARN-~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~ 592 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKK 592 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh
Confidence 99999996 47999998865433332 233344455444555544433
No 128
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=5.7e-18 Score=191.13 Aligned_cols=290 Identities=23% Similarity=0.264 Sum_probs=196.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.|++.|. +-.+.-+..-|..+.||-|||+++.+|++...+ .|..|.|++++..||..-++++..+..
T Consensus 85 r~ydVQl--iGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL-----------~GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 85 RHFDVQL--IGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL-----------TGKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CcchhHH--HhhhhhcCCceeeecCCCChhHHHHHHHHHHhh-----------cCCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 5666665 444444566899999999999999999977654 588899999999999999999999999
Q ss_pred hcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhc------ccccCCccEEEEcccchhh-ccC-------
Q 038133 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERR------YAVLNQCNYVVLDEADRMI-DMG------- 417 (671)
Q Consensus 353 ~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~------~~~l~~~~~vViDEah~~~-~~~------- 417 (671)
.+|++|.++.++.+..+.... -.|+|+++|+..| .|+|..+ ......+.|.||||+|.++ |..
T Consensus 152 ~LGLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIIS 229 (939)
T PRK12902 152 FLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIIS 229 (939)
T ss_pred HhCCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccccc
Confidence 999999999888776655432 3799999999888 3444322 2346778999999999764 110
Q ss_pred --------ChHHHHHHHHhCCC-----------------------------------CCC-CCCCchh-----hh-----
Q 038133 418 --------FEPQVVGVLDAMPS-----------------------------------SNL-KPENEDE-----EL----- 443 (671)
Q Consensus 418 --------f~~~i~~il~~l~~-----------------------------------~~~-~~~~~~~-----~~----- 443 (671)
.......+...+.. .++ .+...+. .+
T Consensus 230 g~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~l 309 (939)
T PRK12902 230 GQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKEL 309 (939)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHH
Confidence 11111111111111 000 0000000 00
Q ss_pred -----------------------------------------------------------hhhhhcceEEEEeccCCHHHH
Q 038133 444 -----------------------------------------------------------DEKRIYRTTYMFSATMPPAVE 464 (671)
Q Consensus 444 -----------------------------------------------------------~~~~~~~q~i~~SAT~~~~~~ 464 (671)
.-.+.|..+.+||+|......
T Consensus 310 f~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~ 389 (939)
T PRK12902 310 FIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEV 389 (939)
T ss_pred HhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHH
Confidence 002346667788999877666
Q ss_pred HHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEE
Q 038133 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVT 542 (671)
Q Consensus 465 ~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~ 542 (671)
.+..-|--+ ++.+++..+....-....++.+...|+.++.+.+... .+.||||-+.|++..+.++..|...|++..
T Consensus 390 Ef~~iY~l~--Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~ 467 (939)
T PRK12902 390 EFEKTYKLE--VTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHN 467 (939)
T ss_pred HHHHHhCCc--EEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchh
Confidence 666665443 4444444433333333445667778888887666543 489999999999999999999999999999
Q ss_pred EecCCCCHHHHHH-HHHHhhcCC-CcEEEecccccccCCCC
Q 038133 543 TLHGGKSQEQREI-SLEGFRTKR-YNVLVATDVAGRGIDIP 581 (671)
Q Consensus 543 ~lhg~~~~~~R~~-~l~~F~~g~-~~VLVaT~~~~~GiDIp 581 (671)
+++..-...+++. ++. ..|. -.|-|||+++|||.||.
T Consensus 468 vLNAk~~~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 468 LLNAKPENVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eeeCCCcchHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 9998632223333 332 2454 35999999999999984
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=1.4e-17 Score=194.97 Aligned_cols=344 Identities=19% Similarity=0.199 Sum_probs=206.1
Q ss_pred HHHcCCCCCcHHHHHHHHHHh----CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 266 VERVGYKNPSPIQMAAIPLGL----QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 266 i~~~g~~~p~~~Q~~ai~~il----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
+...|| ++++-|.+....+. .+..+++.|+||+|||++|++|++... .+.++||++||++|++
T Consensus 239 ~~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~ 305 (820)
T PRK07246 239 IALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQD 305 (820)
T ss_pred hccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHH
Confidence 333466 79999999655544 567899999999999999999987653 3678999999999999
Q ss_pred HH-HHHHHHHHhhcCcEEEEEECCCchH-----HH------------------------------------------HHH
Q 038133 342 QI-EEETVKFAHYLGIKVVSIVGGQSIE-----EQ------------------------------------------GFR 373 (671)
Q Consensus 342 Qi-~~~~~k~~~~~~i~v~~~~gg~~~~-----~~------------------------------------------~~~ 373 (671)
|+ ...+..+.+.+++++..+.|+.+.- ++ +..
T Consensus 306 Ql~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~ 385 (820)
T PRK07246 306 QIMAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQ 385 (820)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHH
Confidence 99 5778888888888887777653210 00 000
Q ss_pred ------------------------HhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC-----C----h-
Q 038133 374 ------------------------IRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG-----F----E- 419 (671)
Q Consensus 374 ------------------------l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~-----f----~- 419 (671)
-...++|||+++..|...+..... +...++|||||||++.+.. . .
T Consensus 386 i~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~ 464 (820)
T PRK07246 386 LKHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLMLQLEQLSRHQLNITS 464 (820)
T ss_pred hhccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHHHHHHHhcceecHHH
Confidence 011467999999998877654433 6789999999999875311 0 0
Q ss_pred --HHH-------------------------------------------HH---HHHhC------------CCCC----CC
Q 038133 420 --PQV-------------------------------------------VG---VLDAM------------PSSN----LK 435 (671)
Q Consensus 420 --~~i-------------------------------------------~~---il~~l------------~~~~----~~ 435 (671)
..+ .. .+..+ .... +.
T Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e 544 (820)
T PRK07246 465 FLQTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLE 544 (820)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 000 00 00000 0000 00
Q ss_pred CC-----C---------chhhhh-hhhhcceEEEEeccCC--HHHHHHHHHhcCC--CeEEEECCCCccccceeEEEEEe
Q 038133 436 PE-----N---------EDEELD-EKRIYRTTYMFSATMP--PAVERLARKYLRN--PVVVTIGTAGKATELISQHVVMM 496 (671)
Q Consensus 436 ~~-----~---------~~~~~~-~~~~~~q~i~~SAT~~--~~~~~l~~~~l~~--p~~i~i~~~~~~~~~i~~~~~~~ 496 (671)
.. . +...+. -......++++|||++ +... + ...++- .....+... .. .+....+
T Consensus 545 ~~~~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~-~~~lGl~~~~~~~~~~~--~~---~~~~~~i 617 (820)
T PRK07246 545 SEKQSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-L-ADLLGFEEYLFHKIEKD--KK---QDQLVVV 617 (820)
T ss_pred ecCCCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-H-HHHcCCCccceecCCCC--hH---HccEEEe
Confidence 00 0 000000 0122357899999996 3322 3 222332 111111111 00 1111111
Q ss_pred ----c------cchhHHHHHHHHHH--hCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC
Q 038133 497 ----K------ESEKFSRLQRLLDE--LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR 564 (671)
Q Consensus 497 ----~------~~~k~~~L~~ll~~--~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~ 564 (671)
. +..-...+.+.+.. ..+++++|+++|.+.++.++..|....+.+ ...|... .+..+++.|+++.
T Consensus 618 ~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~ 694 (820)
T PRK07246 618 DQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGE 694 (820)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCC
Confidence 1 11112233333211 247899999999999999999997665544 4445322 2456899999988
Q ss_pred CcEEEecccccccCCCCC--CcEEEEcCCCC------------------------------CHHHHHHHhcccCCCCCcc
Q 038133 565 YNVLVATDVAGRGIDIPD--VAHVINYDMPG------------------------------NIEMYTHRIGRTGRAGKTG 612 (671)
Q Consensus 565 ~~VLVaT~~~~~GiDIp~--v~~VI~~d~p~------------------------------s~~~y~QriGR~gR~G~~g 612 (671)
..||++|+.+++|||+|+ ...||....|. -+..+.|.+||.-|...+-
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~ 774 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQK 774 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCc
Confidence 899999999999999974 45566555542 1233579999999987643
Q ss_pred EEEEEecCC--CchHHHHHHHHH
Q 038133 613 VATTFLTFH--DTDVFYDLKQML 633 (671)
Q Consensus 613 ~ai~~~~~~--d~~~~~~l~~~l 633 (671)
-++++++.. ...+-..+.+.|
T Consensus 775 Gvv~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 775 SAVLILDRRILTKSYGKQILASL 797 (820)
T ss_pred EEEEEECCcccccHHHHHHHHhC
Confidence 345555543 233444444444
No 130
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.81 E-value=4.2e-19 Score=200.76 Aligned_cols=340 Identities=19% Similarity=0.252 Sum_probs=218.6
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGL----QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.++.||++.++++. -+-+.|+|.++|.|||+..+..+..-..... .+...-.....||+||. .|+--|..++.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~--s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRR--SESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhc--ccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 45789999988775 2457899999999999876554443332210 00011123448999997 58888999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhcc------------
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDM------------ 416 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~------------ 416 (671)
+|+.. +++...+|+....-....-.+..+|+|++|+.+.+.+. ++.-..+.|+|+||.|-|-+.
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLR 1127 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecchHHHHHHHHHHHh
Confidence 99887 67777888766554444444568999999988854332 222346789999999954220
Q ss_pred -------------CChHHHHHHHHhCCCCCCCCCCchh-------------------------hhhh-------------
Q 038133 417 -------------GFEPQVVGVLDAMPSSNLKPENEDE-------------------------ELDE------------- 445 (671)
Q Consensus 417 -------------~f~~~i~~il~~l~~~~~~~~~~~~-------------------------~~~~------------- 445 (671)
+---.+..+++.+-+..+.+..... .+..
T Consensus 1128 a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRl 1207 (1549)
T KOG0392|consen 1128 ANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRL 1207 (1549)
T ss_pred hcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 0111222222222222111110000 0000
Q ss_pred --------hhhcceEEEEeccCCHHH------------------------------------HHHHHHhcCCCeEEEECC
Q 038133 446 --------KRIYRTTYMFSATMPPAV------------------------------------ERLARKYLRNPVVVTIGT 481 (671)
Q Consensus 446 --------~~~~~q~i~~SAT~~~~~------------------------------------~~l~~~~l~~p~~i~i~~ 481 (671)
.+...|- ...++.|-- ....++.+..|..+....
T Consensus 1208 KedVL~DLPpKIIQD--yyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1208 KEDVLKDLPPKIIQD--YYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHhhCChhhhhh--eeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 0000000 111111111 223344555666655442
Q ss_pred CCccccce------eEEEEEeccchhHHHHHHHHHHh----------------CCCcEEEEecChhhHHHHHHHHHHc--
Q 038133 482 AGKATELI------SQHVVMMKESEKFSRLQRLLDEL----------------GDKTAIVFVNTKKNADMVAKNLDKL-- 537 (671)
Q Consensus 482 ~~~~~~~i------~~~~~~~~~~~k~~~L~~ll~~~----------------~~~~iIVF~~~~~~~~~l~~~L~~~-- 537 (671)
.......+ ....+.+..+.|+.+|.++|..- .++++||||.-+..++.+.+.|-+.
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 22111111 11112234567899999999764 2467999999999999999988765
Q ss_pred -CCeEEEecCCCCHHHHHHHHHHhhcC-CCcEEE-ecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEE
Q 038133 538 -GYRVTTLHGGKSQEQREISLEGFRTK-RYNVLV-ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVA 614 (671)
Q Consensus 538 -~~~v~~lhg~~~~~~R~~~l~~F~~g-~~~VLV-aT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~a 614 (671)
.+....+.|+.++.+|..+...|+++ .++||+ +|.+.|-|+|+.++++||+++..|++..-.|.+.||.|.|++.++
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 34455899999999999999999999 788876 778999999999999999999999999999999999999988654
Q ss_pred --EEEecCC
Q 038133 615 --TTFLTFH 621 (671)
Q Consensus 615 --i~~~~~~ 621 (671)
|.|++..
T Consensus 1446 NVyRlItrG 1454 (1549)
T KOG0392|consen 1446 NVYRLITRG 1454 (1549)
T ss_pred eeeeehhcc
Confidence 5555543
No 131
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=2.7e-18 Score=190.59 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=117.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH-
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA- 351 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~- 351 (671)
.|-.+|...+..+-.+...+++|||.+|||++-...+=..+.. .+...+|+++||.+|+.|+...+...+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe---------sD~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE---------SDSDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh---------cCCCEEEEecchHHHhhhhhHHHHHhhc
Confidence 5778999999999999999999999999998765555555433 467889999999999999988777665
Q ss_pred hhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhh---cccccCCccEEEEcccchhhccCChHHHHHHHHh
Q 038133 352 HYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---RYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 428 (671)
Q Consensus 352 ~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~---~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~ 428 (671)
...-.+.+.+.|....+-+.. -..|.|+|+-|+.|-.+|.. .......+.|||+||+|.+....-.-.+..++..
T Consensus 582 ~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred cCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 222234444555444332221 12699999999999888766 3345678899999999998765544344444444
Q ss_pred CCCCCCCCCCchhhhhhhhhcceEEEEeccCCHH
Q 038133 429 MPSSNLKPENEDEELDEKRIYRTTYMFSATMPPA 462 (671)
Q Consensus 429 l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 462 (671)
+ .+.++.+|||..+.
T Consensus 660 i-------------------~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 660 I-------------------PCPFLVLSATIGNP 674 (1330)
T ss_pred c-------------------CCCeeEEecccCCH
Confidence 3 35689999998664
No 132
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.80 E-value=2.8e-18 Score=187.43 Aligned_cols=337 Identities=21% Similarity=0.300 Sum_probs=214.8
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGL----QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.+-+||.-.+++++ .+-+.|+..++|.|||+. +++.|+++... ...|| -|||||...|-+ |..++.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~-------g~~gp-HLVVvPsSTleN-WlrEf~ 468 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI-------GNPGP-HLVVVPSSTLEN-WLREFA 468 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc-------CCCCC-cEEEecchhHHH-HHHHHH
Confidence 47789999888775 455789999999999965 56667777652 23455 599999998876 566677
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHH-hc---CCeEEEEcchHHHHHH-hhcccccCCccEEEEcccchhhccCCh----
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRI-RQ---GCEVVIATPGRLIDCL-ERRYAVLNQCNYVVLDEADRMIDMGFE---- 419 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l-~~---~~~IiI~Tp~~L~~~l-~~~~~~l~~~~~vViDEah~~~~~~f~---- 419 (671)
+||.. ++|..++|........... .. +.+|+++|+.....-- .+..+.-.+++++|+||+|.+-+...+
T Consensus 469 kwCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~ 546 (941)
T KOG0389|consen 469 KWCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKH 546 (941)
T ss_pred HhCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHH
Confidence 77654 6788888887654443332 22 5899999998764211 112223456889999999977554311
Q ss_pred ---------------------HHHHHHHHhCCCCCCC-----------------CCCchhhhhh----------------
Q 038133 420 ---------------------PQVVGVLDAMPSSNLK-----------------PENEDEELDE---------------- 445 (671)
Q Consensus 420 ---------------------~~i~~il~~l~~~~~~-----------------~~~~~~~~~~---------------- 445 (671)
..+..++..+-+.-+. .+.+...+..
T Consensus 547 LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 547 LMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred hccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 1112222221111000 0111110100
Q ss_pred ---------hhh---cceEEEEeccCCHH------------------------------------------------HHH
Q 038133 446 ---------KRI---YRTTYMFSATMPPA------------------------------------------------VER 465 (671)
Q Consensus 446 ---------~~~---~~q~i~~SAT~~~~------------------------------------------------~~~ 465 (671)
.+. ....+.||.+--.. +..
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 000 11122233221111 111
Q ss_pred HHHHhcCCCeEEEECCCCcccc------------ceeE-----EE----EEeccchhHHHHHHHHHHhC--CCcEEEEec
Q 038133 466 LARKYLRNPVVVTIGTAGKATE------------LISQ-----HV----VMMKESEKFSRLQRLLDELG--DKTAIVFVN 522 (671)
Q Consensus 466 l~~~~l~~p~~i~i~~~~~~~~------------~i~~-----~~----~~~~~~~k~~~L~~ll~~~~--~~~iIVF~~ 522 (671)
+++..+..|.+-.. ......+ ...+ .+ ...-.+.|...|..+|.... +.+||||..
T Consensus 707 mak~il~e~ay~~~-n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 707 MAKRILNEPAYKKA-NEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHhCchhhhhc-CHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeH
Confidence 12222222221110 0000000 0000 00 01123568888888887753 789999999
Q ss_pred ChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC--CcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHH
Q 038133 523 TKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR--YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTH 600 (671)
Q Consensus 523 ~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~--~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~Q 600 (671)
.....+.|.-.|.-.++..+.+.|...-..|+.+++.|...+ +-+|++|.+.|-|||+..+++||.+|+..++-+-.|
T Consensus 786 FTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~Q 865 (941)
T KOG0389|consen 786 FTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQ 865 (941)
T ss_pred HHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccch
Confidence 999999999999999999999999999999999999998764 347789999999999999999999999999999999
Q ss_pred HhcccCCCCCcc--EEEEEecCCC
Q 038133 601 RIGRTGRAGKTG--VATTFLTFHD 622 (671)
Q Consensus 601 riGR~gR~G~~g--~ai~~~~~~d 622 (671)
+--||.|.|+.. .+|.|++...
T Consensus 866 AEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 866 AEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred hHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999764 5555665543
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=1e-18 Score=181.81 Aligned_cols=321 Identities=19% Similarity=0.228 Sum_probs=213.6
Q ss_pred CCcHHHHHHHHHHhCC---CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQ---RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~---rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
.++|||..++..+..+ |..||+.|+|+|||++-+-++.. -.+.+||||.+..-+.||...|..
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t--------------ikK~clvLcts~VSVeQWkqQfk~ 367 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT--------------IKKSCLVLCTSAVSVEQWKQQFKQ 367 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee--------------ecccEEEEecCccCHHHHHHHHHh
Confidence 6789999999999843 67899999999999876554422 356799999999999999998888
Q ss_pred HHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc--------ccccCCccEEEEcccchhhccCChHH
Q 038133 350 FAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR--------YAVLNQCNYVVLDEADRMIDMGFEPQ 421 (671)
Q Consensus 350 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~--------~~~l~~~~~vViDEah~~~~~~f~~~ 421 (671)
+..--+-.++..+..... ....+|.|+|+|+.++..--.+. .+.-..++++|+||+|-+-..-|+..
T Consensus 368 wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRV 442 (776)
T KOG1123|consen 368 WSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRV 442 (776)
T ss_pred hcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHH
Confidence 766555556665554431 23467999999998874332221 12246789999999998777777766
Q ss_pred HHHHHHhCCCCCC----CCCC----------------chhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECC
Q 038133 422 VVGVLDAMPSSNL----KPEN----------------EDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT 481 (671)
Q Consensus 422 i~~il~~l~~~~~----~~~~----------------~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~ 481 (671)
+.-+...+..... +.+. .|..+..+ -..--+-+.--|.|..-.+.+.||+.+.
T Consensus 443 lsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~k-GhIA~VqCaEVWCpMt~eFy~eYL~~~t------ 515 (776)
T KOG1123|consen 443 LSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKK-GHIAKVQCAEVWCPMTPEFYREYLRENT------ 515 (776)
T ss_pred HHHHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhC-CceeEEeeeeeecCCCHHHHHHHHhhhh------
Confidence 6655554422100 0000 00000000 0111111111222223334444444221
Q ss_pred CCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHH
Q 038133 482 AGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559 (671)
Q Consensus 482 ~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~ 559 (671)
-.....++....|+....-+++.+ .+.++|||..+.-.....+-.|.+ -.++|..++.+|..|++.
T Consensus 516 -------~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqn 583 (776)
T KOG1123|consen 516 -------RKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQN 583 (776)
T ss_pred -------hhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHh
Confidence 111223344566787777777654 488999999887666655555533 468899999999999999
Q ss_pred hhcC-CCcEEEecccccccCCCCCCcEEEEcCCC-CCHHHHHHHhcccCCCCC------ccEEEEEecCCCchHHHHHHH
Q 038133 560 FRTK-RYNVLVATDVAGRGIDIPDVAHVINYDMP-GNIEMYTHRIGRTGRAGK------TGVATTFLTFHDTDVFYDLKQ 631 (671)
Q Consensus 560 F~~g-~~~VLVaT~~~~~GiDIp~v~~VI~~d~p-~s~~~y~QriGR~gR~G~------~g~ai~~~~~~d~~~~~~l~~ 631 (671)
|+-. .++-+..+.++...||+|.++++|..... .|-.+-.||.||.-|+-+ ....|+++..+..+.+|.-+.
T Consensus 584 Fq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKR 663 (776)
T KOG1123|consen 584 FQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKR 663 (776)
T ss_pred cccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhh
Confidence 9854 57888888999999999999999977654 367788999999999742 356777777777777766543
No 134
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.79 E-value=1.8e-17 Score=186.18 Aligned_cols=339 Identities=18% Similarity=0.180 Sum_probs=208.5
Q ss_pred CCcHHHHHHHHHHhC---C-------CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 273 NPSPIQMAAIPLGLQ---Q-------RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~---~-------rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
.++|+|.+++..+.. | ..+|+...+|+|||+..+..+..++...|... ..-.+.|||||. .|+.-
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~----~~~~k~lVV~P~-sLv~n 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAK----PLINKPLVVAPS-SLVNN 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCcc----ccccccEEEccH-HHHHH
Confidence 588999999988763 2 24788889999999988777777777655211 123678999997 57777
Q ss_pred HHHHHHHHHhhcCcEEEEEECCCch--HHHHHHH-----hcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc
Q 038133 343 IEEETVKFAHYLGIKVVSIVGGQSI--EEQGFRI-----RQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 343 i~~~~~k~~~~~~i~v~~~~gg~~~--~~~~~~l-----~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~ 415 (671)
|+.+|.++.-...+....++|.... -.....+ .-..-|+|.+++.+.+.+. .+.+..+++||+||.|++-+
T Consensus 313 WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 313 WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccc
Confidence 8888888766555677777777663 1111111 1135688889998875554 34477899999999998532
Q ss_pred cC----------------------C---hHHHHHHHHhCCCCCCCCCCch--------------------h---------
Q 038133 416 MG----------------------F---EPQVVGVLDAMPSSNLKPENED--------------------E--------- 441 (671)
Q Consensus 416 ~~----------------------f---~~~i~~il~~l~~~~~~~~~~~--------------------~--------- 441 (671)
.. | -..+..+++...+..+...... .
T Consensus 391 ~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 391 SDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred hhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 11 1 1122333333333222221100 0
Q ss_pred -hhhhh---------------hhcceEEEEeccCCH--HHH-------------------HHHHHhcCCCeEEEECCCCc
Q 038133 442 -ELDEK---------------RIYRTTYMFSATMPP--AVE-------------------RLARKYLRNPVVVTIGTAGK 484 (671)
Q Consensus 442 -~~~~~---------------~~~~q~i~~SAT~~~--~~~-------------------~l~~~~l~~p~~i~i~~~~~ 484 (671)
.+... ...-.++++-.|.-. ... ..++..+..|..+.......
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 00000 011122333222100 000 01222333444432111000
Q ss_pred c-------c-----cceeEEEEEeccchhHHHHHHHHHHh---CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCC
Q 038133 485 A-------T-----ELISQHVVMMKESEKFSRLQRLLDEL---GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKS 549 (671)
Q Consensus 485 ~-------~-----~~i~~~~~~~~~~~k~~~L~~ll~~~---~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~ 549 (671)
. . ............+.|+..|..++... ....+++..|.+...+.+.....-.|+.++.+||.|+
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 0 0 00011111112345667777776332 1234444456666666666666667999999999999
Q ss_pred HHHHHHHHHHhhcCCC---cEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEe
Q 038133 550 QEQREISLEGFRTKRY---NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618 (671)
Q Consensus 550 ~~~R~~~l~~F~~g~~---~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~ 618 (671)
..+|+.+++.|++... -+|.+|.+.|.||++-+++.||.||++|+++.-.|+++|+.|.|++-.||+|-
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 9999999999997543 36668889999999999999999999999999999999999999886666554
No 135
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.78 E-value=2.6e-18 Score=181.41 Aligned_cols=300 Identities=22% Similarity=0.257 Sum_probs=201.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSI 367 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 367 (671)
.+-++-+|||.||||.-++ +.+. .....++.-|.|.||..+++.+.. .|+.|..++|....
T Consensus 191 RkIi~H~GPTNSGKTy~AL----qrl~-----------~aksGvycGPLrLLA~EV~~r~na----~gipCdL~TGeE~~ 251 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRAL----QRLK-----------SAKSGVYCGPLRLLAHEVYDRLNA----LGIPCDLLTGEERR 251 (700)
T ss_pred heEEEEeCCCCCchhHHHH----HHHh-----------hhccceecchHHHHHHHHHHHhhh----cCCCccccccceee
Confidence 3457788999999998754 3332 356679999999999988777665 68888888886553
Q ss_pred HHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhh
Q 038133 368 EEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKR 447 (671)
Q Consensus 368 ~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~ 447 (671)
..... ...+..+-||.++.. .-..+++.||||++.|-|...+-.+..-+-.+.....+.+.
T Consensus 252 ~~~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG--------- 312 (700)
T KOG0953|consen 252 FVLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG--------- 312 (700)
T ss_pred ecCCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---------
Confidence 33211 123677888877651 13457899999999999877666666555555443222221
Q ss_pred hcceEEEEeccCCHHHHHHHHHhcC---CCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecCh
Q 038133 448 IYRTTYMFSATMPPAVERLARKYLR---NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTK 524 (671)
Q Consensus 448 ~~~q~i~~SAT~~~~~~~l~~~~l~---~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~ 524 (671)
.|.+..+.++.+. +...+ ..+...+.-.-.+.+..-++....|.+| .|-++
T Consensus 313 ------------epsvldlV~~i~k~TGd~vev-------------~~YeRl~pL~v~~~~~~sl~nlk~GDCv-V~FSk 366 (700)
T KOG0953|consen 313 ------------EPSVLDLVRKILKMTGDDVEV-------------REYERLSPLVVEETALGSLSNLKPGDCV-VAFSK 366 (700)
T ss_pred ------------CchHHHHHHHHHhhcCCeeEE-------------EeecccCcceehhhhhhhhccCCCCCeE-EEeeh
Confidence 1334444444332 21111 1111111111112344445555566664 46678
Q ss_pred hhHHHHHHHHHHcCCe-EEEecCCCCHHHHHHHHHHhhc--CCCcEEEecccccccCCCCCCcEEEEcCCC---------
Q 038133 525 KNADMVAKNLDKLGYR-VTTLHGGKSQEQREISLEGFRT--KRYNVLVATDVAGRGIDIPDVAHVINYDMP--------- 592 (671)
Q Consensus 525 ~~~~~l~~~L~~~~~~-v~~lhg~~~~~~R~~~l~~F~~--g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p--------- 592 (671)
+.+..+...+++.|.. +++++|+++++.|..--..|++ ++++||||||++|+|+|+ +++.||+++.-
T Consensus 367 k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~ 445 (700)
T KOG0953|consen 367 KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETED 445 (700)
T ss_pred hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCccccee
Confidence 8899999999998665 9999999999999999999998 899999999999999999 99999988764
Q ss_pred CCHHHHHHHhcccCCCCC---ccEEEEEecCCCchHHHHHHHHHHhcCCCC-------ChhHHhchhccCCCCC
Q 038133 593 GNIEMYTHRIGRTGRAGK---TGVATTFLTFHDTDVFYDLKQMLIQSNSPV-------PPELAKHEASKFKPGT 656 (671)
Q Consensus 593 ~s~~~y~QriGR~gR~G~---~g~ai~~~~~~d~~~~~~l~~~l~~~~~~v-------p~~L~~~~~~~~~~g~ 656 (671)
.+..+..|..|||||.|. .|.+.+|.. +.+..|...|.....++ ..++....+.++.+++
T Consensus 446 it~sqikQIAGRAGRf~s~~~~G~vTtl~~----eDL~~L~~~l~~p~epi~~agl~pt~eqie~fa~~~Pd~t 515 (700)
T KOG0953|consen 446 ITVSQIKQIAGRAGRFGSKYPQGEVTTLHS----EDLKLLKRILKRPVEPIKNAGLWPTDEQIELFAYHLPDAT 515 (700)
T ss_pred ccHHHHHHHhhcccccccCCcCceEEEeeH----hhHHHHHHHHhCCchHHHhccCCccHHHHHHHHHhCCCcc
Confidence 368889999999999973 477666653 33445555555443322 2455555555555554
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=2.2e-17 Score=150.74 Aligned_cols=119 Identities=47% Similarity=0.686 Sum_probs=111.5
Q ss_pred chhHHHHHHHHHHhC--CCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccc
Q 038133 499 SEKFSRLQRLLDELG--DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGR 576 (671)
Q Consensus 499 ~~k~~~L~~ll~~~~--~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~ 576 (671)
+.|...+..++.... ++++||||++...++.+++.|...+..+..+||+++..++..++..|.+|...||++|.++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 368888888887764 789999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEE
Q 038133 577 GIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 617 (671)
Q Consensus 577 GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~ 617 (671)
|+|+|++++||++++|++...|.|++||++|.|+.|.+++|
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999988764
No 137
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.73 E-value=1.8e-15 Score=170.05 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhc----CCCcEEEecccccccC
Q 038133 503 SRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT----KRYNVLVATDVAGRGI 578 (671)
Q Consensus 503 ~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~----g~~~VLVaT~~~~~Gi 578 (671)
..+..++.. .++.++|.+.|...+..++..|...--..+.+.|..+ .+..+++.|+. |.-.||++|+.+++||
T Consensus 460 ~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 334444444 4779999999999999999999764223345556543 34557788886 4788999999999999
Q ss_pred CC--------CC--CcEEEEcCCCCC-------------------------HHHHHHHhcccCCCCCc--cEEEEEecCC
Q 038133 579 DI--------PD--VAHVINYDMPGN-------------------------IEMYTHRIGRTGRAGKT--GVATTFLTFH 621 (671)
Q Consensus 579 DI--------p~--v~~VI~~d~p~s-------------------------~~~y~QriGR~gR~G~~--g~ai~~~~~~ 621 (671)
|+ |+ ++.||+...|.. +..+.|-+||.-|...+ --++.++++.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 99 23 888987776631 22356999999998765 3345555544
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=1.3e-15 Score=181.64 Aligned_cols=121 Identities=18% Similarity=0.152 Sum_probs=86.3
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCC--eEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCC--CcEEEE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKLGY--RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPD--VAHVIN 588 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~~~--~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~--v~~VI~ 588 (671)
.++++|||++|....+.+++.|..... ...++.-+++...|..+++.|+.+.-.||++|+.+++|||+|+ +++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 467999999999999999999976422 1222322444445788999999988889999999999999998 477887
Q ss_pred cCCCC------------------------------CHHHHHHHhcccCCCCCccEEEEEecCC--CchHHHHHHHHH
Q 038133 589 YDMPG------------------------------NIEMYTHRIGRTGRAGKTGVATTFLTFH--DTDVFYDLKQML 633 (671)
Q Consensus 589 ~d~p~------------------------------s~~~y~QriGR~gR~G~~g~ai~~~~~~--d~~~~~~l~~~l 633 (671)
...|. .+..+.|.+||.-|...+--++++++.. ...+-..+.+.|
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 66553 1223469999999998664455666544 333444444444
No 139
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=4.2e-16 Score=177.72 Aligned_cols=332 Identities=21% Similarity=0.272 Sum_probs=229.1
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhh
Q 038133 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHY 353 (671)
Q Consensus 274 p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~ 353 (671)
++|+-.|.+-.+.-+..-|.-+.||-|||+++.+|++-..+ .|.-|-|++.+--||.-=.+++..++..
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL-----------~GkgVHvVTVNDYLA~RDaewmgply~f 236 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNAL-----------TGNGVHVVTVNDYLAKRDSEWMGPLYEF 236 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHH-----------cCCCcEEEEechhhhhccHHHHHHHHHH
Confidence 44555556666666667899999999999999999977665 4777889999999999999999999999
Q ss_pred cCcEEEEEEC-CCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcc------cccCCccEEEEcccchhh-cc--------
Q 038133 354 LGIKVVSIVG-GQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRY------AVLNQCNYVVLDEADRMI-DM-------- 416 (671)
Q Consensus 354 ~~i~v~~~~g-g~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~------~~l~~~~~vViDEah~~~-~~-------- 416 (671)
+|++|.++.. +.+..+... .-.|+|+++|..-| .|+|..+. .+...+.|.||||+|.++ |.
T Consensus 237 LGLsvg~i~~~~~~~~~rr~--aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSILIDEARTPLIIS 314 (1112)
T PRK12901 237 HGLSVDCIDKHQPNSEARRK--AYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIIS 314 (1112)
T ss_pred hCCceeecCCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhhhccccCcEEEe
Confidence 9999998876 434443322 23699999998776 44443332 245678999999999753 10
Q ss_pred -----CC-------hHHHHHH--------------------------------------------HHhCCCC--------
Q 038133 417 -----GF-------EPQVVGV--------------------------------------------LDAMPSS-------- 432 (671)
Q Consensus 417 -----~f-------~~~i~~i--------------------------------------------l~~l~~~-------- 432 (671)
+- .+.+..+ +..+...
T Consensus 315 Gp~~~~~~~~y~~~~~~V~~Lv~~Q~~~~~~~~~~a~~~i~~~~~~eg~~~l~r~~~g~Pknk~li~~L~e~~~~~~~~k 394 (1112)
T PRK12901 315 GPVPKGDDQEFEELKPRVERLVEAQRKLATQFLAEAKKLIAEGDKKEGGLALLRAYRGLPKNKALIKFLSEEGIKALLQK 394 (1112)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhccccchhHHHHHhhhhhhhhhhhh
Confidence 00 0100000 0000000
Q ss_pred -------------------------------------------------CC------------CCCC-------------
Q 038133 433 -------------------------------------------------NL------------KPEN------------- 438 (671)
Q Consensus 433 -------------------------------------------------~~------------~~~~------------- 438 (671)
.+ ....
T Consensus 395 ~e~~~~~~n~~~~~~~~~~~dy~iDek~~~v~LTe~G~~~~e~~~~~~~~fv~pdi~~~~~~I~~ly~l~~~ek~~~k~~ 474 (1112)
T PRK12901 395 TENFYMQDNNREMPEVDEELYFVIDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKEE 474 (1112)
T ss_pred hhhhhhhhhhhcccccCCCCceEEecCCCceeecHHHHHHHhcccCchhhhhccchhhhhhcchhhcccchhhhhhhhhh
Confidence 00 0000
Q ss_pred ------chhh--------hhh-----------------------------------------------------------
Q 038133 439 ------EDEE--------LDE----------------------------------------------------------- 445 (671)
Q Consensus 439 ------~~~~--------~~~----------------------------------------------------------- 445 (671)
.... +.+
T Consensus 475 ~~~~~~~~~~~~h~i~qaLkA~~lf~kDvdYiV~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtI 554 (1112)
T PRK12901 475 LFQDYSVKSERVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATI 554 (1112)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeee
Confidence 0000 000
Q ss_pred -----hhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEE
Q 038133 446 -----KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAI 518 (671)
Q Consensus 446 -----~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iI 518 (671)
.+.|..+.+||.|.......+..-|--+ ++.+++..+....-....++.....|+.++.+.+... .+.|||
T Consensus 555 T~QnyFR~Y~kLsGMTGTA~tea~Ef~~IY~L~--Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVL 632 (1112)
T PRK12901 555 TLQNYFRMYHKLAGMTGTAETEAGEFWDIYKLD--VVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVL 632 (1112)
T ss_pred eHHHHHhhCchhcccCCCCHHHHHHHHHHhCCC--EEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEE
Confidence 1224455678888877766666666544 4444544333333333445667778888887777654 489999
Q ss_pred EEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC-CcEEEecccccccCCCC--------CCcEEEEc
Q 038133 519 VFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR-YNVLVATDVAGRGIDIP--------DVAHVINY 589 (671)
Q Consensus 519 VF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~-~~VLVaT~~~~~GiDIp--------~v~~VI~~ 589 (671)
|-+.|++..+.|+..|...|++..+++......+-+.+-+ .|. -.|-|||+++|||.||. +-=+||..
T Consensus 633 VGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgT 709 (1112)
T PRK12901 633 VGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGT 709 (1112)
T ss_pred EEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEc
Confidence 9999999999999999999998888888655433333323 243 35999999999999997 44678889
Q ss_pred CCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 590 DMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 590 d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
..+.|..--.|..||+||-|.+|.+.+|++.+|.
T Consensus 710 erheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 710 ERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9999999999999999999999999999998874
No 140
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.71 E-value=1.4e-16 Score=178.08 Aligned_cols=340 Identities=20% Similarity=0.267 Sum_probs=216.5
Q ss_pred CCCCCcHHHHHHHHHHhC----CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHH
Q 038133 270 GYKNPSPIQMAAIPLGLQ----QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345 (671)
Q Consensus 270 g~~~p~~~Q~~ai~~il~----~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~ 345 (671)
.-..+.+||...+.++.+ +-+.|+..+||.|||.. .+.++.|++... ...||+ ||+||+..|.. |..
T Consensus 391 ~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K------~~~GP~-LvivPlstL~N-W~~ 461 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK------QMQGPF-LIIVPLSTLVN-WSS 461 (1157)
T ss_pred cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc------ccCCCe-EEeccccccCC-chh
Confidence 334788999999988763 34689999999999964 566677776532 235665 99999999998 344
Q ss_pred HHHHHHhhcCcEEEEEECCCchHHH-HH-HHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc--------
Q 038133 346 ETVKFAHYLGIKVVSIVGGQSIEEQ-GF-RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID-------- 415 (671)
Q Consensus 346 ~~~k~~~~~~i~v~~~~gg~~~~~~-~~-~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~-------- 415 (671)
+|.+.+. .+..+...|....... .. ......+|+++|++.++. .+..+.--++.|+||||.|+|.+
T Consensus 462 Ef~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~ 537 (1157)
T KOG0386|consen 462 EFPKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAICKLTDT 537 (1157)
T ss_pred hcccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchhhHHHHH
Confidence 4444433 2344444443322111 11 122458999999998866 22233344577999999999853
Q ss_pred --cCChHHHHHHHHhCCCCCCCC----------------CCchhhhhhhhhcceEEE-----------------------
Q 038133 416 --MGFEPQVVGVLDAMPSSNLKP----------------ENEDEELDEKRIYRTTYM----------------------- 454 (671)
Q Consensus 416 --~~f~~~i~~il~~l~~~~~~~----------------~~~~~~~~~~~~~~q~i~----------------------- 454 (671)
..+..+...++...|..|-.| +.....-... ..+..+
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~--PFantGek~eLteEEtlLIIrRLHkVLRP 615 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQ--PFANTGEKVELTEEETLLIIRRLHKVLRP 615 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhh--hhhhcCCcccccchHHHHHHHHHHHhhhH
Confidence 233333333333333322111 1100000000 000000
Q ss_pred ---------EeccCCHHHHHH------------------------------------------HHHhcCCCeEEE-ECCC
Q 038133 455 ---------FSATMPPAVERL------------------------------------------ARKYLRNPVVVT-IGTA 482 (671)
Q Consensus 455 ---------~SAT~~~~~~~l------------------------------------------~~~~l~~p~~i~-i~~~ 482 (671)
...-+|..++.+ .++.+..|.... +...
T Consensus 616 FlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~ 695 (1157)
T KOG0386|consen 616 FLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENS 695 (1157)
T ss_pred HHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccc
Confidence 111122222211 122222222110 0000
Q ss_pred CccccceeEEEEEeccchhHHHHHHHHHHhC--CCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHh
Q 038133 483 GKATELISQHVVMMKESEKFSRLQRLLDELG--DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560 (671)
Q Consensus 483 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~--~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F 560 (671)
......+ ...+..+.|+..|..+|..+. ++.++.||....-.+.+..+|.-.++....+.|....++|...+..|
T Consensus 696 ~~~~~~~---~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 696 YTLHYDI---KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred cccccCh---hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 0000000 122345678888888887764 89999999999999999999999999999999999999999999999
Q ss_pred hcCC---CcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHH
Q 038133 561 RTKR---YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFY 627 (671)
Q Consensus 561 ~~g~---~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~ 627 (671)
+.-. +.+|++|.+.+.|+|+..+++||.||..|++..+.|+.-|+.|.|+...+-++....-..+-.
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE 842 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEE 842 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHH
Confidence 9754 347789999999999999999999999999999999999999999887777766554444433
No 141
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.71 E-value=2.3e-15 Score=157.11 Aligned_cols=311 Identities=15% Similarity=0.189 Sum_probs=202.0
Q ss_pred CCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 271 YKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 271 ~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
+..+-|+|++.+...+ .|..+++..++|.|||+.++..+.-|... .| .||+||...+ .-|.+.+.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE-----------wp-lliVcPAsvr-ftWa~al~r 262 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE-----------WP-LLIVCPASVR-FTWAKALNR 262 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc-----------Cc-EEEEecHHHh-HHHHHHHHH
Confidence 4567899999998887 56778889999999999988777666643 33 7999998644 457777777
Q ss_pred HHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhC
Q 038133 350 FAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429 (671)
Q Consensus 350 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l 429 (671)
|+.... .+.++.++...-. .+-....|.|.+++.|..+-. .+.-..+.+||+||+|++-+..-. ....++..+
T Consensus 263 ~lps~~-pi~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sktk-r~Ka~~dll 335 (689)
T KOG1000|consen 263 FLPSIH-PIFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSKTK-RTKAATDLL 335 (689)
T ss_pred hccccc-ceEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccchh-hhhhhhhHH
Confidence 765433 2444455443221 112235799999998854332 222345889999999987553311 111111111
Q ss_pred CCCCCCCCCchhhhhhhhhcceEEEEeccC-------------------CHHHHHHHHHhcCCCeE-EEECCCCc-----
Q 038133 430 PSSNLKPENEDEELDEKRIYRTTYMFSATM-------------------PPAVERLARKYLRNPVV-VTIGTAGK----- 484 (671)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~-------------------~~~~~~l~~~~l~~p~~-i~i~~~~~----- 484 (671)
. ....+|++|.|+ -|..-.++..|+.-... +..+..+.
T Consensus 336 k-----------------~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~E 398 (689)
T KOG1000|consen 336 K-----------------VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEE 398 (689)
T ss_pred H-----------------HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHH
Confidence 1 123456666663 22333444444331100 00000000
Q ss_pred ---------------------cccceeEEEEEec--------------------------------------cchhHHHH
Q 038133 485 ---------------------ATELISQHVVMMK--------------------------------------ESEKFSRL 505 (671)
Q Consensus 485 ---------------------~~~~i~~~~~~~~--------------------------------------~~~k~~~L 505 (671)
.+.. .+.+..+. ...|...+
T Consensus 399 L~~lL~k~lMIRRlK~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av 477 (689)
T KOG1000|consen 399 LAALLFKRLMIRRLKADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAV 477 (689)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHH
Confidence 0000 11111110 01133334
Q ss_pred HHHHHH------hCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC-CcE-EEeccccccc
Q 038133 506 QRLLDE------LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR-YNV-LVATDVAGRG 577 (671)
Q Consensus 506 ~~ll~~------~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~-~~V-LVaT~~~~~G 577 (671)
.+.|.. .++.+.+|||......+.+...+.+.++....+.|..++..|....+.|...+ ..| +++..+++.|
T Consensus 478 ~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvG 557 (689)
T KOG1000|consen 478 CEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVG 557 (689)
T ss_pred HHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccc
Confidence 444433 14678999999999999999999999999999999999999999999998654 443 3466788999
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEec
Q 038133 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619 (671)
Q Consensus 578 iDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~ 619 (671)
+++..++.||+...+|++.-++|.-.|+.|.|++..+.+.+.
T Consensus 558 Lt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 558 LTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred eeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEE
Confidence 999999999999999999999999999999998765544443
No 142
>COG4889 Predicted helicase [General function prediction only]
Probab=99.71 E-value=2.8e-17 Score=180.23 Aligned_cols=327 Identities=19% Similarity=0.220 Sum_probs=194.3
Q ss_pred HHHcCCCCCcHHHHHHHHHHhCC----CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 266 VERVGYKNPSPIQMAAIPLGLQQ----RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 266 i~~~g~~~p~~~Q~~ai~~il~~----rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
+.-..-..|+|+|.+||...+.| ...=+++.+|+|||++.|-.+-. + ...++|+|||+..|..
T Consensus 154 l~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEa-l------------a~~~iL~LvPSIsLLs 220 (1518)
T COG4889 154 LPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEA-L------------AAARILFLVPSISLLS 220 (1518)
T ss_pred cccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHH-H------------hhhheEeecchHHHHH
Confidence 33344568999999999999864 23456677899999998765433 2 2478999999999999
Q ss_pred HHHHHHHHHHhhcCcEEEEEECCCchHH--------------------HH-----HHHhcCCeEEEEcchHHHHHHhhcc
Q 038133 342 QIEEETVKFAHYLGIKVVSIVGGQSIEE--------------------QG-----FRIRQGCEVVIATPGRLIDCLERRY 396 (671)
Q Consensus 342 Qi~~~~~k~~~~~~i~v~~~~gg~~~~~--------------------~~-----~~l~~~~~IiI~Tp~~L~~~l~~~~ 396 (671)
|..+++..- +.++++...+++...... -. ..-..+--||++|++.|...-+...
T Consensus 221 QTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe 299 (1518)
T COG4889 221 QTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQE 299 (1518)
T ss_pred HHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHH
Confidence 988777653 335666665555322110 00 0111256799999999987777767
Q ss_pred cccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHH--------------
Q 038133 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPA-------------- 462 (671)
Q Consensus 397 ~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~-------------- 462 (671)
.-+..+++||.|||||-........=..-+..+.. ...+. ....+.||||+---
T Consensus 300 ~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs--------~~niK----a~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 300 AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHS--------DQNIK----AAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred cCCCCccEEEecchhccccceecccCcccceeecC--------cchhH----HHHhhhcccCchhhchhhhhhhhhccce
Confidence 77899999999999985321100000000000000 00000 11123345553110
Q ss_pred -------------------HHHHHHHhcCCCeEEEECCCCccccceeEEE-EEeccchhHHHHHHHH-------HHh---
Q 038133 463 -------------------VERLARKYLRNPVVVTIGTAGKATELISQHV-VMMKESEKFSRLQRLL-------DEL--- 512 (671)
Q Consensus 463 -------------------~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~-~~~~~~~k~~~L~~ll-------~~~--- 512 (671)
-+.+.+..|.+..++..-..........+.. ......-...-...|+ +..
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 1112333444444333322211111111111 1111111111111111 110
Q ss_pred -----------CCCcEEEEecChhhHHHHHHHHHHc-------------C--CeEEEecCCCCHHHHHHHHH---HhhcC
Q 038133 513 -----------GDKTAIVFVNTKKNADMVAKNLDKL-------------G--YRVTTLHGGKSQEQREISLE---GFRTK 563 (671)
Q Consensus 513 -----------~~~~iIVF~~~~~~~~~l~~~L~~~-------------~--~~v~~lhg~~~~~~R~~~l~---~F~~g 563 (671)
+-.+.|-||.++++...+++.+... + +.+..+.|.|+..+|...+. .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 1124789999999888877766421 3 34556779999999966554 34557
Q ss_pred CCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCC--CC-ccEEEEEe
Q 038133 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA--GK-TGVATTFL 618 (671)
Q Consensus 564 ~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~--G~-~g~ai~~~ 618 (671)
+++||-...++++|+|+|..+-||+|++-.++.+.+|.+||+.|- |+ -|+.|+=+
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 789999999999999999999999999999999999999999995 32 25554433
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.70 E-value=4.3e-17 Score=135.23 Aligned_cols=78 Identities=49% Similarity=0.795 Sum_probs=75.7
Q ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCC
Q 038133 532 KNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 609 (671)
Q Consensus 532 ~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G 609 (671)
+.|+..++.+..+||++++.+|..+++.|++|...|||||+++++|||+|++++||++++|+|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468888999999999999999999999999999999999999999999999999999999999999999999999987
No 144
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=3.7e-16 Score=164.81 Aligned_cols=340 Identities=15% Similarity=0.108 Sum_probs=227.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 263 LRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 263 ~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
...+..+--.....+|..+|..+-+|++.++.-.|.+||++++.+.....+..- .....+++.|+.++++.
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---------~~s~~~~~~~~~~~~~~ 346 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC---------HATNSLLPSEMVEHLRN 346 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC---------cccceecchhHHHHhhc
Confidence 334455556678899999999999999999999999999999988887776542 34557899999999874
Q ss_pred HHHHHHHH---HhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc----ccCCccEEEEcccchhhc
Q 038133 343 IEEETVKF---AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA----VLNQCNYVVLDEADRMID 415 (671)
Q Consensus 343 i~~~~~k~---~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~----~l~~~~~vViDEah~~~~ 415 (671)
...-+.-. .+...--++-.+.+.+..+.....+.+..++++.|.........+.. .+-...++++||+|...-
T Consensus 347 ~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~ 426 (1034)
T KOG4150|consen 347 GSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF 426 (1034)
T ss_pred cCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec
Confidence 32211000 01111233445566666666666777899999999988665543322 244456799999996532
Q ss_pred cCChH----HHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCC-CeEEEECC-CCccccce
Q 038133 416 MGFEP----QVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRN-PVVVTIGT-AGKATELI 489 (671)
Q Consensus 416 ~~f~~----~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~-p~~i~i~~-~~~~~~~i 489 (671)
. |.. ++..+++.+.- .......|++-.|||+...+.....-+--+ ...+.++. +......+
T Consensus 427 ~-~~~~~~~~~R~L~~L~~~------------F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V 493 (1034)
T KOG4150|consen 427 P-TKALAQDQLRALSDLIKG------------FEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFV 493 (1034)
T ss_pred c-hhhHHHHHHHHHHHHHHH------------HHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEE
Confidence 2 222 22233222211 112235788999999988777554433333 23333332 22222222
Q ss_pred eEEEEEec--c---chhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHc----C----CeEEEecCCCCHHHHH
Q 038133 490 SQHVVMMK--E---SEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKL----G----YRVTTLHGGKSQEQRE 554 (671)
Q Consensus 490 ~~~~~~~~--~---~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~----~----~~v~~lhg~~~~~~R~ 554 (671)
.+...... + +++......++... .+-++|-||.+++-|+.+....++. + -.+..+.||...++|.
T Consensus 494 ~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRR 573 (1034)
T KOG4150|consen 494 LWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRR 573 (1034)
T ss_pred EeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHH
Confidence 22221111 1 22232233333221 3778999999999999887655443 1 1245688999999999
Q ss_pred HHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCch
Q 038133 555 ISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624 (671)
Q Consensus 555 ~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~ 624 (671)
.+...+-.|...-+|||++++-||||.+.+.|++.++|.|+..+.|..||+||.+++..++.+......+
T Consensus 574 KIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVD 643 (1034)
T KOG4150|consen 574 KIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVD 643 (1034)
T ss_pred HHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchh
Confidence 9999999999999999999999999999999999999999999999999999999987777666544433
No 145
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.68 E-value=3.8e-16 Score=177.43 Aligned_cols=344 Identities=21% Similarity=0.273 Sum_probs=230.5
Q ss_pred CCCCcHHHHHHHHHHhC-CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH-H
Q 038133 271 YKNPSPIQMAAIPLGLQ-QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET-V 348 (671)
Q Consensus 271 ~~~p~~~Q~~ai~~il~-~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~-~ 348 (671)
|....|+|.|+++.+.. ++++++++|+|||||+++-++++. .....++++++|.-+.+...+..| .
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------------~~~~~~~vyi~p~~~i~~~~~~~w~~ 1208 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------------PDTIGRAVYIAPLEEIADEQYRDWEK 1208 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------------CccceEEEEecchHHHHHHHHHHHHH
Confidence 33448999999999885 567999999999999998887754 135678999999999997766554 5
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChH------HH
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEP------QV 422 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~------~i 422 (671)
+|.+..|..++.+.|..+.. ..+....+|+|+||+++ +.+. ...++++.|.||.|.+.+.. ++ .+
T Consensus 1209 ~f~~~~G~~~~~l~ge~s~~---lkl~~~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~ 1279 (1674)
T KOG0951|consen 1209 KFSKLLGLRIVKLTGETSLD---LKLLQKGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHLIGGVY-GAVYEVICSM 1279 (1674)
T ss_pred hhccccCceEEecCCccccc---hHHhhhcceEEechhHH-HHHh----hhhhcceEeeehhhhhcccC-CceEEEEeeH
Confidence 56666788888888877743 34556689999999996 4443 47889999999999775221 11 12
Q ss_pred HHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccch--
Q 038133 423 VGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESE-- 500 (671)
Q Consensus 423 ~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~-- 500 (671)
..|...+-. ...++.+|..+...-. + -++....++.+....... ...-++..++...
T Consensus 1280 r~ia~q~~k-----------------~ir~v~ls~~lana~d-~--ig~s~~~v~Nf~p~~R~~-Pl~i~i~~~~~~~~~ 1338 (1674)
T KOG0951|consen 1280 RYIASQLEK-----------------KIRVVALSSSLANARD-L--IGASSSGVFNFSPSVRPV-PLEIHIQSVDISHFE 1338 (1674)
T ss_pred HHHHHHHHh-----------------heeEEEeehhhccchh-h--ccccccceeecCcccCCC-ceeEEEEEeccchhH
Confidence 222222211 3456677766544321 1 222222333333332222 2222233222211
Q ss_pred -hH-----HHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHH----------------------cCCeEEEecCCCCHH
Q 038133 501 -KF-----SRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDK----------------------LGYRVTTLHGGKSQE 551 (671)
Q Consensus 501 -k~-----~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~----------------------~~~~v~~lhg~~~~~ 551 (671)
.. ..+..+.+.. .+.+.+||+++++.|..++..|-. ..+...+-|-+++..
T Consensus 1339 ~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~ 1418 (1674)
T KOG0951|consen 1339 SRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSN 1418 (1674)
T ss_pred HHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcc
Confidence 11 1122222322 378899999999999887765511 122333338899999
Q ss_pred HHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE-----cC------CCCCHHHHHHHhcccCCCCCccEEEEEecC
Q 038133 552 QREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN-----YD------MPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620 (671)
Q Consensus 552 ~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~-----~d------~p~s~~~y~QriGR~gR~G~~g~ai~~~~~ 620 (671)
+...+-..|..|.+.|+|...- ..|+-.. .+.||. || .+.++....|+.|++.| .|.|+++...
T Consensus 1419 d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~ 1493 (1674)
T KOG0951|consen 1419 DQEIVQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHT 1493 (1674)
T ss_pred hHHHHHHHHhcCcEEEEEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecC
Confidence 9999999999999999998766 7777763 344542 32 34578999999999998 4679999888
Q ss_pred CCchHHHHHHHHHHhcCCCCChhHHhchhccCCCCCCCCCC
Q 038133 621 HDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDRP 661 (671)
Q Consensus 621 ~d~~~~~~l~~~l~~~~~~vp~~L~~~~~~~~~~g~i~~~~ 661 (671)
.+.+++..+-..-....+.+--.|.++.++++..++|.++|
T Consensus 1494 ~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~tienkq 1534 (1674)
T KOG0951|consen 1494 PKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQ 1534 (1674)
T ss_pred chHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHHHHhHH
Confidence 88777755444333446667778999999999999998876
No 146
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.66 E-value=3e-15 Score=137.29 Aligned_cols=144 Identities=40% Similarity=0.591 Sum_probs=111.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIE 368 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 368 (671)
+++++.++||+|||.+++.++...... ...+.++|++|++.|+.|+.+.+...... ++.+..+.++....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 70 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIK 70 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchh
Confidence 368999999999999998888776643 24678999999999999999988887765 67888888887766
Q ss_pred HHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhh
Q 038133 369 EQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRI 448 (671)
Q Consensus 369 ~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~ 448 (671)
.........++|+|+|++.+...+.........+++|||||+|.+....+.............
T Consensus 71 ~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~----------------- 133 (144)
T cd00046 71 QQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPK----------------- 133 (144)
T ss_pred HHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCc-----------------
Confidence 665555678999999999998877765555678899999999998776554432111222211
Q ss_pred cceEEEEeccC
Q 038133 449 YRTTYMFSATM 459 (671)
Q Consensus 449 ~~q~i~~SAT~ 459 (671)
..+++++|||+
T Consensus 134 ~~~~i~~saTp 144 (144)
T cd00046 134 DRQVLLLSATP 144 (144)
T ss_pred cceEEEEeccC
Confidence 46789999995
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.60 E-value=8.9e-13 Score=152.72 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=76.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-CCeEEEecCCCCHHHHHHHHHHhh----cCCCcEEEecccccccCCCCC--CcEE
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL-GYRVTTLHGGKSQEQREISLEGFR----TKRYNVLVATDVAGRGIDIPD--VAHV 586 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~l~~F~----~g~~~VLVaT~~~~~GiDIp~--v~~V 586 (671)
++.+|||++|...++.++..|... +.. +..+|.. .+..+++.|+ .|...||++|..+++|||+|+ +++|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 455899999999999999998753 333 4445642 4667786666 467789999999999999987 7888
Q ss_pred EEcCCCC----C--------------------------HHHHHHHhcccCCCCCccEEEEEecCC
Q 038133 587 INYDMPG----N--------------------------IEMYTHRIGRTGRAGKTGVATTFLTFH 621 (671)
Q Consensus 587 I~~d~p~----s--------------------------~~~y~QriGR~gR~G~~g~ai~~~~~~ 621 (671)
|....|. + +..+.|.+||.-|...+--+++++++.
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 8777663 1 112469999999987654455555544
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.60 E-value=1.6e-13 Score=156.30 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=77.6
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHH--
Q 038133 295 AETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGF-- 372 (671)
Q Consensus 295 a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~-- 372 (671)
+-+|||||.+|+-.+-..+. .|.++|||+|...|+.|+...+...+. +..++.++++.+..+...
T Consensus 167 ~~~GSGKTevyl~~i~~~l~-----------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLR-----------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHH-----------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 33699999999888877764 588999999999999999888877642 267888888887665433
Q ss_pred -HHhcC-CeEEEEcchHHHHHHhhcccccCCccEEEEcccch
Q 038133 373 -RIRQG-CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412 (671)
Q Consensus 373 -~l~~~-~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~ 412 (671)
.+..| +.|||||...+ +..+.++++|||||.|.
T Consensus 234 ~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 234 LAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred HHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCc
Confidence 33344 79999997665 45688999999999995
No 149
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.59 E-value=3.2e-13 Score=144.84 Aligned_cols=253 Identities=19% Similarity=0.240 Sum_probs=184.7
Q ss_pred CCeEEEEcchHHHHHHhh------cccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCC-Cc------hhhh
Q 038133 377 GCEVVIATPGRLIDCLER------RYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPE-NE------DEEL 443 (671)
Q Consensus 377 ~~~IiI~Tp~~L~~~l~~------~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~-~~------~~~~ 443 (671)
.+|||||+|=.|...+.. ....|+++.++|||.||.|.-.+|. .+..|+..+.....+.. .+ +...
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~-Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWE-HVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHH-HHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 589999999999887764 4557999999999999987765554 34444444432211111 11 1122
Q ss_pred hhhhhcceEEEEeccCCHHHHHHHHHhcCCCeE-EEE-------CCCCccccceeEEEEEeccc-------hhHHH----
Q 038133 444 DEKRIYRTTYMFSATMPPAVERLARKYLRNPVV-VTI-------GTAGKATELISQHVVMMKES-------EKFSR---- 504 (671)
Q Consensus 444 ~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~-i~i-------~~~~~~~~~i~~~~~~~~~~-------~k~~~---- 504 (671)
.....++|++++|+...|.+..+...++.+..- +.+ +........+.|.+..+... .+++.
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 235679999999999999999999987776432 111 11123344566666654322 23322
Q ss_pred -HHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccc--cccCCCC
Q 038133 505 -LQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA--GRGIDIP 581 (671)
Q Consensus 505 -L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~--~~GiDIp 581 (671)
|-.+......+.+|||+++.-.--.|.++|.+.++..+.+|-..++.+...+-..|.+|+..||+.|.-+ -+-..|.
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 2222223346889999999999999999999999999999999999999999999999999999999754 4778899
Q ss_pred CCcEEEEcCCCCCHHHHHHHhcccCCCCC------ccEEEEEecCCCchHHHHHH
Q 038133 582 DVAHVINYDMPGNIEMYTHRIGRTGRAGK------TGVATTFLTFHDTDVFYDLK 630 (671)
Q Consensus 582 ~v~~VI~~d~p~s~~~y~QriGR~gR~G~------~g~ai~~~~~~d~~~~~~l~ 630 (671)
++.+||.|++|..+.-|...++-.+.... .+.|.++++.-|.--+..|.
T Consensus 370 Gi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred CCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 99999999999999999988876655443 57999999987765554443
No 150
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.59 E-value=7e-14 Score=151.03 Aligned_cols=126 Identities=23% Similarity=0.345 Sum_probs=111.4
Q ss_pred eccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCc-EEEecc
Q 038133 496 MKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN-VLVATD 572 (671)
Q Consensus 496 ~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~-VLVaT~ 572 (671)
+.++.|+..|..+|... .++.+|+|+...+.++.+.++|...++....+.|+....+|..++..|...++- +|++|.
T Consensus 1024 itdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTR 1103 (1185)
T KOG0388|consen 1024 ITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTR 1103 (1185)
T ss_pred hccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecc
Confidence 45677888888888765 488999999999999999999999999999999999999999999999986644 678999
Q ss_pred cccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCcc--EEEEEecCC
Q 038133 573 VAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG--VATTFLTFH 621 (671)
Q Consensus 573 ~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g--~ai~~~~~~ 621 (671)
+.|-|||+..+++||+||..|++..-.|...|+.|.|+.. .+|.+++..
T Consensus 1104 AGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1104 AGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 9999999999999999999999999999999999999764 456666544
No 151
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.59 E-value=1.8e-13 Score=154.27 Aligned_cols=120 Identities=28% Similarity=0.419 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC--CcEEEecccccc
Q 038133 501 KFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR--YNVLVATDVAGR 576 (671)
Q Consensus 501 k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~--~~VLVaT~~~~~ 576 (671)
|+..|.-+|..+ .++.+|||....+..+.|..+|..+|+.+..+.|..+-++|+..++.|+... +.++++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 344444444433 3677999999999999999999999999999999999999999999999865 567889999999
Q ss_pred cCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEE--EEEecC
Q 038133 577 GIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVA--TTFLTF 620 (671)
Q Consensus 577 GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~a--i~~~~~ 620 (671)
|||+.++++||+||..|++.--.|..-|+.|.|+...+ |.|+..
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 99999999999999999999888888888888876544 444443
No 152
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.58 E-value=6.4e-14 Score=151.84 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=97.0
Q ss_pred cchhHHHHHHHHHHh---CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhc--CCCcEE-Eec
Q 038133 498 ESEKFSRLQRLLDEL---GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT--KRYNVL-VAT 571 (671)
Q Consensus 498 ~~~k~~~L~~ll~~~---~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~--g~~~VL-VaT 571 (671)
.+.|...+.+++... ...+++|...-......+...|.+.|+....+||.....+|..+++.|+. |...|+ ++-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 445666666665543 35566766666777788889999999999999999999999999999975 445555 566
Q ss_pred ccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEE
Q 038133 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 616 (671)
Q Consensus 572 ~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~ 616 (671)
.+.|.|||+-+.+|+|..|+.|++.--.|.+.|..|.|++..++.
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 888999999999999999999999999999999999998754443
No 153
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.57 E-value=2e-14 Score=139.08 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=101.3
Q ss_pred CCcHHHHHHHHHHhC-------CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQ-------QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~-------~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~ 345 (671)
+|+++|.+|+..+.. ++.+++.+|||||||.+++..+.... . +++|+||+..|+.|+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------~--~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------R--KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH------------C--EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc------------c--ceeEecCHHHHHHHHHH
Confidence 589999999999883 68899999999999999886665553 1 89999999999999999
Q ss_pred HHHHHHhhcCcEEEE----------EECC-CchHHHHHHHhcCCeEEEEcchHHHHHHhhc-----------ccccCCcc
Q 038133 346 ETVKFAHYLGIKVVS----------IVGG-QSIEEQGFRIRQGCEVVIATPGRLIDCLERR-----------YAVLNQCN 403 (671)
Q Consensus 346 ~~~k~~~~~~i~v~~----------~~gg-~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~-----------~~~l~~~~ 403 (671)
.+..+.......... .... ...............|+++|.+.|....... ......++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 69 EFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 986664432111110 0111 1111111222346789999999998776431 12356788
Q ss_pred EEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCC
Q 038133 404 YVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMP 460 (671)
Q Consensus 404 ~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~ 460 (671)
+||+||||++....- ...++. .+ ...+++||||+.
T Consensus 149 ~vI~DEaH~~~~~~~---~~~i~~-~~------------------~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDSS---YREIIE-FK------------------AAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHHH---HHHHHH-SS------------------CCEEEEEESS-S
T ss_pred EEEEehhhhcCCHHH---HHHHHc-CC------------------CCeEEEEEeCcc
Confidence 999999999855431 334444 21 356899999975
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=1.8e-12 Score=151.18 Aligned_cols=75 Identities=23% Similarity=0.222 Sum_probs=63.1
Q ss_pred cCCCCCcHHHHHHHHHHh----CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGL----QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE 344 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~ 344 (671)
+.|..++|.|.+.+..+. .+.++++.+|||+|||++.|.|++.++...+ ..++++|++.|..-..|..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------~~~kIiy~sRThsQl~q~i 77 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------EVRKIIYASRTHSQLEQAT 77 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------ccccEEEEcccchHHHHHH
Confidence 457777999999876665 6789999999999999999999999986422 3478999999999999999
Q ss_pred HHHHHHH
Q 038133 345 EETVKFA 351 (671)
Q Consensus 345 ~~~~k~~ 351 (671)
+++++..
T Consensus 78 ~Elk~~~ 84 (705)
T TIGR00604 78 EELRKLM 84 (705)
T ss_pred HHHHhhh
Confidence 9998853
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.56 E-value=8e-13 Score=153.75 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=78.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCC-eEEEecCCCCHHHHHHHHHHhhcCCC-cEEEecccccccCCCCC--CcEEEEc
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKLGY-RVTTLHGGKSQEQREISLEGFRTKRY-NVLVATDVAGRGIDIPD--VAHVINY 589 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~~~-~v~~lhg~~~~~~R~~~l~~F~~g~~-~VLVaT~~~~~GiDIp~--v~~VI~~ 589 (671)
++++|||++|...+..+++.+..... .....+|..+ +..+++.|..+.- -++|+|..+++|||+|+ ...||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 56999999999999999999988755 2445555544 3478888887655 89999999999999987 4677777
Q ss_pred CCCC------------------------------CHHHHHHHhcccCCCCCccEEEEEecC
Q 038133 590 DMPG------------------------------NIEMYTHRIGRTGRAGKTGVATTFLTF 620 (671)
Q Consensus 590 d~p~------------------------------s~~~y~QriGR~gR~G~~g~ai~~~~~ 620 (671)
..|. .+..+.|.+||+-|.-.+.-++++++.
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 6654 234467999999997655434444443
No 156
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.56 E-value=3.4e-13 Score=140.83 Aligned_cols=122 Identities=21% Similarity=0.263 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHh----CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcC-CCc-EEEeccc
Q 038133 500 EKFSRLQRLLDEL----GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK-RYN-VLVATDV 573 (671)
Q Consensus 500 ~k~~~L~~ll~~~----~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g-~~~-VLVaT~~ 573 (671)
.|.++|.+.|... ..-+.|||.......+.+.=.|.+.|+.++-+.|+|++..|..+++.|.+. .+. +||+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 3566666655432 245789999999999999999999999999999999999999999999986 355 4567789
Q ss_pred ccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCC--ccEEEEEecCC
Q 038133 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGK--TGVATTFLTFH 621 (671)
Q Consensus 574 ~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~--~g~ai~~~~~~ 621 (671)
.|..+|+..+++|+..|+.|+++--.|...|..|.|+ +-.++.|+-..
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 9999999999999999999999999999999999985 44566666543
No 157
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.55 E-value=1.6e-14 Score=120.19 Aligned_cols=81 Identities=54% Similarity=0.820 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCC
Q 038133 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA 608 (671)
Q Consensus 529 ~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~ 608 (671)
.++..|...++.+..+||++++.+|..++..|+++...|||+|+++++|+|+|++++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 038133 609 G 609 (671)
Q Consensus 609 G 609 (671)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 158
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=4.2e-13 Score=141.48 Aligned_cols=359 Identities=17% Similarity=0.209 Sum_probs=238.4
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEc-CCCChH--HHHHHHHHHHHHhcCCCCC--------------------cccccCC
Q 038133 271 YKNPSPIQMAAIPLGLQQRDVIGIA-ETGSGK--TAAFVLPMLTYISRLPPIS--------------------EENEAEG 327 (671)
Q Consensus 271 ~~~p~~~Q~~ai~~il~~rd~ii~a-~TGsGK--T~~~ll~~l~~l~~~~~~~--------------------~~~~~~g 327 (671)
-..+|+.|.+.+.++.+.+|++..- ..|.|+ +.+|++.++.++.+....- .+..-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 3478999999999999999987543 224455 4678888888886532110 0111235
Q ss_pred CeEEEEecchhhHHHHHHHHHHHHhhcCc-E--E------E----------------------EEECCCc--------hH
Q 038133 328 PYAVVMAPTRELAQQIEEETVKFAHYLGI-K--V------V----------------------SIVGGQS--------IE 368 (671)
Q Consensus 328 ~~vLil~Ptr~La~Qi~~~~~k~~~~~~i-~--v------~----------------------~~~gg~~--------~~ 368 (671)
|+||||||+|+-|-.+...+..+..+.+- + | . ...|.+. ..
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 99999999999999888877776433221 0 0 0 0111110 00
Q ss_pred HHHHHH---hcCCeEEEEcchHHHHHHhh------cccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCC-CC
Q 038133 369 EQGFRI---RQGCEVVIATPGRLIDCLER------RYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKP-EN 438 (671)
Q Consensus 369 ~~~~~l---~~~~~IiI~Tp~~L~~~l~~------~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~-~~ 438 (671)
.....| ....+|+||+|=.|.-.+.+ ....|+.+.++|||-||-|+..+|+ .+..|++.+.....+. ..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCC
Confidence 011111 12589999999999777762 3346899999999999999887775 4556666664432221 11
Q ss_pred ------chhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEEC-------CCCccccceeEEEEEe-------cc
Q 038133 439 ------EDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIG-------TAGKATELISQHVVMM-------KE 498 (671)
Q Consensus 439 ------~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~-------~~~~~~~~i~~~~~~~-------~~ 498 (671)
.|......+.++|+++||+--.+....+...|+.+..--... ........+.|.+..+ ..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 123334567799999999999999999988888764322111 1111112222322222 11
Q ss_pred chhHHHHHHH-HHH---hCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccc
Q 038133 499 SEKFSRLQRL-LDE---LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA 574 (671)
Q Consensus 499 ~~k~~~L~~l-l~~---~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~ 574 (671)
+.++.....- +.. .....+|||+++.-.--.+.+++++.++..+.+|.-.+...-..+-+.|-.|...||+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 2333333222 222 124568999999999999999999999888888888888888888899999999999999764
Q ss_pred --cccCCCCCCcEEEEcCCCCCHHHHH---HHhcccCCCC----CccEEEEEecCCCchHHHHHH
Q 038133 575 --GRGIDIPDVAHVINYDMPGNIEMYT---HRIGRTGRAG----KTGVATTFLTFHDTDVFYDLK 630 (671)
Q Consensus 575 --~~GiDIp~v~~VI~~d~p~s~~~y~---QriGR~gR~G----~~g~ai~~~~~~d~~~~~~l~ 630 (671)
-+-.+|.+|..||.|.+|..+.-|. .+++|+.--| ..-.|.++++.-|.--+..+.
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 4788999999999999999988775 4555543322 235888888887765554443
No 159
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.46 E-value=2.7e-12 Score=147.84 Aligned_cols=310 Identities=18% Similarity=0.219 Sum_probs=181.0
Q ss_pred CCCcHHHHHHHHHHhCC------Cc--EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQ------RD--VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~------rd--~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
..-..+|-.|+..+..- .. ++-.|.||+|||++=...|..... ...|.+..|..-.|.|..|.
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd---------~~~g~RfsiALGLRTLTLQT 477 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRD---------DKQGARFAIALGLRSLTLQT 477 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCC---------CCCCceEEEEccccceeccc
Confidence 34567999999888741 12 555689999999988777755432 24677899999999999998
Q ss_pred HHHHHHHHhhcCcEEEEEECCCchHHHH-------------------------------------------HHHh-----
Q 038133 344 EEETVKFAHYLGIKVVSIVGGQSIEEQG-------------------------------------------FRIR----- 375 (671)
Q Consensus 344 ~~~~~k~~~~~~i~v~~~~gg~~~~~~~-------------------------------------------~~l~----- 375 (671)
=+.+++...--+-.+++++|+....+.. ..+.
T Consensus 478 Gda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~ 557 (1110)
T TIGR02562 478 GHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKE 557 (1110)
T ss_pred hHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhh
Confidence 7777775543334555555553221100 0010
Q ss_pred ---cCCeEEEEcchHHHHHHhhc---ccccC----CccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhh
Q 038133 376 ---QGCEVVIATPGRLIDCLERR---YAVLN----QCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445 (671)
Q Consensus 376 ---~~~~IiI~Tp~~L~~~l~~~---~~~l~----~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~ 445 (671)
-.+.|+|||+..++-..... ...+. .-+.|||||+|-+-...+ ..+..++..+..
T Consensus 558 ~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~-------------- 622 (1110)
T TIGR02562 558 KTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGL-------------- 622 (1110)
T ss_pred hhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHH--------------
Confidence 03679999999998776321 11111 125799999996522111 222223221111
Q ss_pred hhhcceEEEEeccCCHHHHHHH-HHh----------cCC---CeEEE---ECCCCccccc--------------------
Q 038133 446 KRIYRTTYMFSATMPPAVERLA-RKY----------LRN---PVVVT---IGTAGKATEL-------------------- 488 (671)
Q Consensus 446 ~~~~~q~i~~SAT~~~~~~~l~-~~~----------l~~---p~~i~---i~~~~~~~~~-------------------- 488 (671)
....++++|||+|+.....+ ..| .+. +..|. ++........
T Consensus 623 --lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~ 700 (1110)
T TIGR02562 623 --LGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAV 700 (1110)
T ss_pred --cCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHH
Confidence 13568999999999866532 233 121 22111 1111000000
Q ss_pred ------eeE--EEEEeccc-----hhHHHHHH--------HHHHh----C--CCc---EEEEecChhhHHHHHHHHHHc-
Q 038133 489 ------ISQ--HVVMMKES-----EKFSRLQR--------LLDEL----G--DKT---AIVFVNTKKNADMVAKNLDKL- 537 (671)
Q Consensus 489 ------i~~--~~~~~~~~-----~k~~~L~~--------ll~~~----~--~~~---iIVF~~~~~~~~~l~~~L~~~- 537 (671)
+.. .+..+... .....+.+ +.... + +.+ .+|-++++..+-.++..|...
T Consensus 701 ~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~ 780 (1110)
T TIGR02562 701 QLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALL 780 (1110)
T ss_pred HHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhc
Confidence 000 00111111 11112222 22211 1 112 477778888888888888655
Q ss_pred -----CCeEEEecCCCCHHHHHHHHHHh----------------------hc----CCCcEEEecccccccCCCCCCcEE
Q 038133 538 -----GYRVTTLHGGKSQEQREISLEGF----------------------RT----KRYNVLVATDVAGRGIDIPDVAHV 586 (671)
Q Consensus 538 -----~~~v~~lhg~~~~~~R~~~l~~F----------------------~~----g~~~VLVaT~~~~~GiDIp~v~~V 586 (671)
.+.+++||+......|..+.+.+ .+ +...|+|+|.+++.|+|+ +.+.+
T Consensus 781 ~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~ 859 (1110)
T TIGR02562 781 AEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWA 859 (1110)
T ss_pred cccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCee
Confidence 34588999998777666655432 12 356799999999999999 66666
Q ss_pred EEcCCCCCHHHHHHHhcccCCCCC
Q 038133 587 INYDMPGNIEMYTHRIGRTGRAGK 610 (671)
Q Consensus 587 I~~d~p~s~~~y~QriGR~gR~G~ 610 (671)
|. -|.++...+|+.||+.|.|.
T Consensus 860 ~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 860 IA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred ee--ccCcHHHHHHHhhccccccc
Confidence 53 35669999999999999874
No 160
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.45 E-value=3.5e-12 Score=144.36 Aligned_cols=331 Identities=23% Similarity=0.289 Sum_probs=218.8
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhh
Q 038133 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHY 353 (671)
Q Consensus 274 p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~ 353 (671)
++|+-.|.+-.+.-+..-|.-+-||-|||+++.+|+.-..+ .|..+.++...--||.--.+++..+...
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL-----------~gkgVhvVTvNdYLA~RDae~m~~l~~~ 147 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL-----------AGKGVHVVTVNDYLARRDAEWMGPLYEF 147 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc-----------CCCCcEEeeehHHhhhhCHHHHHHHHHH
Confidence 34555666777777777899999999999999999865443 5788999999999999999999999999
Q ss_pred cCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhc------ccccCCccEEEEcccchhh----------cc
Q 038133 354 LGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERR------YAVLNQCNYVVLDEADRMI----------DM 416 (671)
Q Consensus 354 ~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~------~~~l~~~~~vViDEah~~~----------~~ 416 (671)
+|+++.+...+.+..+....+ .|+|.++|...| .|++..+ ..+...+.|.|+||+|-++ ..
T Consensus 148 LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG 225 (822)
T COG0653 148 LGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISG 225 (822)
T ss_pred cCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeec
Confidence 999999999999877665444 599999998777 3444322 2245578999999999753 11
Q ss_pred ------CChHHHHHHHHhCCCCC-CCCC-------------------------Cchhhh---------------------
Q 038133 417 ------GFEPQVVGVLDAMPSSN-LKPE-------------------------NEDEEL--------------------- 443 (671)
Q Consensus 417 ------~f~~~i~~il~~l~~~~-~~~~-------------------------~~~~~~--------------------- 443 (671)
.....+..+...+.... +.-+ .+....
T Consensus 226 ~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~d 305 (822)
T COG0653 226 PAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVD 305 (822)
T ss_pred ccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCe
Confidence 11222222222221110 0000 000000
Q ss_pred -----------------------------------------------------hhhhhcceEEEEeccCCHHHHHHHHHh
Q 038133 444 -----------------------------------------------------DEKRIYRTTYMFSATMPPAVERLARKY 470 (671)
Q Consensus 444 -----------------------------------------------------~~~~~~~q~i~~SAT~~~~~~~l~~~~ 470 (671)
.-.+++..+.+||.|.......+..-|
T Consensus 306 YIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY 385 (822)
T COG0653 306 YIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIY 385 (822)
T ss_pred eEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhcc
Confidence 001223333445555444444444444
Q ss_pred cCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCC
Q 038133 471 LRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGK 548 (671)
Q Consensus 471 l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~ 548 (671)
..+ ++.++...+....-.....+.....|+.++...+... .+.|+||-..+++..+.+.+.|.+.|++..++...-
T Consensus 386 ~l~--vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~ 463 (822)
T COG0653 386 GLD--VVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKN 463 (822)
T ss_pred CCc--eeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeecccc
Confidence 333 3333433333322333344556677887777666543 489999999999999999999999999988888766
Q ss_pred CHHHHHHHHHHhhcCCC-cEEEecccccccCCCCCCc-----------EEEEcCCCCCHHHHHHHhcccCCCCCccEEEE
Q 038133 549 SQEQREISLEGFRTKRY-NVLVATDVAGRGIDIPDVA-----------HVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 616 (671)
Q Consensus 549 ~~~~R~~~l~~F~~g~~-~VLVaT~~~~~GiDIp~v~-----------~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~ 616 (671)
.. ++.-+-.. .|.. -|-|||+++|+|-||.--. +||-.....|-.--.|..||+||.|-+|.+-.
T Consensus 464 h~--~EA~Iia~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F 540 (822)
T COG0653 464 HA--REAEIIAQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRF 540 (822)
T ss_pred HH--HHHHHHhh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhh
Confidence 53 33333322 3433 4889999999999994322 35555555566666799999999999999888
Q ss_pred EecCCC
Q 038133 617 FLTFHD 622 (671)
Q Consensus 617 ~~~~~d 622 (671)
|++.+|
T Consensus 541 ~lSleD 546 (822)
T COG0653 541 YLSLED 546 (822)
T ss_pred hhhhHH
Confidence 887665
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.42 E-value=7.8e-12 Score=150.48 Aligned_cols=351 Identities=21% Similarity=0.239 Sum_probs=212.6
Q ss_pred CCCCCcHHHHHHHHHHh-----CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHH
Q 038133 270 GYKNPSPIQMAAIPLGL-----QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE 344 (671)
Q Consensus 270 g~~~p~~~Q~~ai~~il-----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~ 344 (671)
.+..+.++|...++.+. .+.+.++..++|.|||+..+..+...... .....+.++|+||+. ++.+|.
T Consensus 335 ~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~-------~~~~~~~~liv~p~s-~~~nw~ 406 (866)
T COG0553 335 LSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLES-------IKVYLGPALIVVPAS-LLSNWK 406 (866)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhc-------ccCCCCCeEEEecHH-HHHHHH
Confidence 34578899999997755 36788999999999997766555442211 011156799999986 555688
Q ss_pred HHHHHHHhhcCcEEEEEECCCch----HHHHHHHhcC-----CeEEEEcchHHHHHH-hhcccccCCccEEEEcccchhh
Q 038133 345 EETVKFAHYLGIKVVSIVGGQSI----EEQGFRIRQG-----CEVVIATPGRLIDCL-ERRYAVLNQCNYVVLDEADRMI 414 (671)
Q Consensus 345 ~~~~k~~~~~~i~v~~~~gg~~~----~~~~~~l~~~-----~~IiI~Tp~~L~~~l-~~~~~~l~~~~~vViDEah~~~ 414 (671)
+++.+++..+.. +....|.... .+....+... .+++++|++.|...+ ....+.-..+.++|+||+|++.
T Consensus 407 ~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 407 REFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred HHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHh
Confidence 888888766543 5666665541 3333333332 799999999987732 1122334567899999999854
Q ss_pred ccC-------------------------ChHHHHHHHH-hCCCCCCCCCCchh------------h----------hh--
Q 038133 415 DMG-------------------------FEPQVVGVLD-AMPSSNLKPENEDE------------E----------LD-- 444 (671)
Q Consensus 415 ~~~-------------------------f~~~i~~il~-~l~~~~~~~~~~~~------------~----------~~-- 444 (671)
+.. ....+..++. .+.+..+....... . ..
T Consensus 486 n~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l 565 (866)
T COG0553 486 NDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELL 565 (866)
T ss_pred hhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHH
Confidence 211 1123333444 32222211100000 0 00
Q ss_pred -h--hh-hcceE-EE--EeccCCHHHHHH------------H--------------------------------------
Q 038133 445 -E--KR-IYRTT-YM--FSATMPPAVERL------------A-------------------------------------- 467 (671)
Q Consensus 445 -~--~~-~~~q~-i~--~SAT~~~~~~~l------------~-------------------------------------- 467 (671)
. .+ ..+.+ .- +-..+|+..+.. .
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 645 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALL 645 (866)
T ss_pred HHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 0 00 00000 00 111222211110 0
Q ss_pred ---HHhcCCCeEEEEC-CCCccc---------cceeEEEEEeccc-hhHHHHHHHH-HHh--CCC--cEEEEecChhhHH
Q 038133 468 ---RKYLRNPVVVTIG-TAGKAT---------ELISQHVVMMKES-EKFSRLQRLL-DEL--GDK--TAIVFVNTKKNAD 528 (671)
Q Consensus 468 ---~~~l~~p~~i~i~-~~~~~~---------~~i~~~~~~~~~~-~k~~~L~~ll-~~~--~~~--~iIVF~~~~~~~~ 528 (671)
+.++..|..+..+ ...... ......-..+..+ .|...+.+++ ... .+. ++|||++.....+
T Consensus 646 ~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~ 725 (866)
T COG0553 646 TRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLD 725 (866)
T ss_pred HHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHH
Confidence 0111122221111 000000 0000000011122 6788888888 332 255 8999999999999
Q ss_pred HHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcC--CCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccC
Q 038133 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK--RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTG 606 (671)
Q Consensus 529 ~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g--~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~g 606 (671)
.+...|...++.+..++|+++...|...++.|.++ ..-+|++|.+++.|+|+..+++||+||+.|++....|.+.|+.
T Consensus 726 il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~ 805 (866)
T COG0553 726 LLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAH 805 (866)
T ss_pred HHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHH
Confidence 99999999998899999999999999999999996 3446678889999999999999999999999999999999999
Q ss_pred CCCCccEEEEEecCCCchHHHHH
Q 038133 607 RAGKTGVATTFLTFHDTDVFYDL 629 (671)
Q Consensus 607 R~G~~g~ai~~~~~~d~~~~~~l 629 (671)
|.|++..+.++-......+...+
T Consensus 806 RigQ~~~v~v~r~i~~~tiEe~i 828 (866)
T COG0553 806 RIGQKRPVKVYRLITRGTIEEKI 828 (866)
T ss_pred HhcCcceeEEEEeecCCcHHHHH
Confidence 99987665555544443333333
No 162
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.29 E-value=1.3e-10 Score=129.55 Aligned_cols=117 Identities=23% Similarity=0.267 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHc----------------------CCeEEEecCCCCHHHHHHH
Q 038133 501 KFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKL----------------------GYRVTTLHGGKSQEQREIS 556 (671)
Q Consensus 501 k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~----------------------~~~v~~lhg~~~~~~R~~~ 556 (671)
|+..|++||... -+.++|||..+....+.+..+|... |.....+.|..+..+|+..
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 556677777654 3789999999999999999999642 4457789999999999999
Q ss_pred HHHhhcCC----CcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEE
Q 038133 557 LEGFRTKR----YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 617 (671)
Q Consensus 557 l~~F~~g~----~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~ 617 (671)
...|++-. .-.||+|.+.+-|||+-.++.||+||..|++.--+|.|=|+.|.|+..-||.|
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99998743 23899999999999999999999999999999999999999999976544444
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.24 E-value=9.1e-11 Score=122.88 Aligned_cols=158 Identities=20% Similarity=0.212 Sum_probs=94.0
Q ss_pred HHHHHHHHHh-------------CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 277 IQMAAIPLGL-------------QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 277 ~Q~~ai~~il-------------~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
+|.+++..++ ..+.+|++.++|+|||+.++..+.......+ ......+|||||. .+..||
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~------~~~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFP------QRGEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCT------TSS-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccc------cccccceeEeecc-chhhhh
Confidence 5777777663 3367999999999999887665543322211 0111259999999 777899
Q ss_pred HHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHh---hcccccCCccEEEEcccchhhccCChH
Q 038133 344 EEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLE---RRYAVLNQCNYVVLDEADRMIDMGFEP 420 (671)
Q Consensus 344 ~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~---~~~~~l~~~~~vViDEah~~~~~~f~~ 420 (671)
..++.+++....+++..+.|...............+|+|+|++.+..... ...+.-..+++||+||+|.+-+.. .
T Consensus 74 ~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s 151 (299)
T PF00176_consen 74 KEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--S 151 (299)
T ss_dssp HHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--S
T ss_pred hhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--c
Confidence 99999998765677777777662222222333468999999999981110 011112348999999999984332 2
Q ss_pred HHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCH
Q 038133 421 QVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461 (671)
Q Consensus 421 ~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 461 (671)
.....+..+. ....+++|||+.+
T Consensus 152 ~~~~~l~~l~------------------~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 152 KRYKALRKLR------------------ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHHHCCC------------------ECEEEEE-SS-SS
T ss_pred cccccccccc------------------cceEEeecccccc
Confidence 3334444443 3557889999643
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.22 E-value=2e-09 Score=128.32 Aligned_cols=295 Identities=17% Similarity=0.190 Sum_probs=168.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIE 368 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 368 (671)
+..+|..-||||||++.+..+-..+ .. ...|.++||+.++.|-.|+.+++..+........ ...+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~-~~--------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~ 340 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLL-EL--------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTS 340 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHH-hc--------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHH
Confidence 4689999999999988766554433 22 3789999999999999999999999876543322 445555
Q ss_pred HHHHHHhcC-CeEEEEcchHHHHHHhhcc--cccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhh
Q 038133 369 EQGFRIRQG-CEVVIATPGRLIDCLERRY--AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445 (671)
Q Consensus 369 ~~~~~l~~~-~~IiI~Tp~~L~~~l~~~~--~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~ 445 (671)
+....+..+ ..|||||-+.|...+.... ..-..==+||+|||||. .++.....+...++.
T Consensus 341 ~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~~-------------- 403 (962)
T COG0610 341 ELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALKK-------------- 403 (962)
T ss_pred HHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhcc--------------
Confidence 555566655 4899999999988776541 11222236999999985 222222233333332
Q ss_pred hhhcceEEEEeccCCHHHHHH-HHHhcCCCeEEEECCCCcccc---ceeEEEE----Eeccch-----------------
Q 038133 446 KRIYRTTYMFSATMPPAVERL-ARKYLRNPVVVTIGTAGKATE---LISQHVV----MMKESE----------------- 500 (671)
Q Consensus 446 ~~~~~q~i~~SAT~~~~~~~l-~~~~l~~p~~i~i~~~~~~~~---~i~~~~~----~~~~~~----------------- 500 (671)
...++||+|+.-.-... .....++....+.-....... .+..... ...+..
T Consensus 404 ----a~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (962)
T COG0610 404 ----AIFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITED 479 (962)
T ss_pred ----ceEEEeeCCccccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHH
Confidence 45889999975432222 111122221111111100000 0000000 000000
Q ss_pred ---h------------------HHHHHHHHHH-----hCCCcEEEEecChhhHHHHHHHHHHc-----------C-----
Q 038133 501 ---K------------------FSRLQRLLDE-----LGDKTAIVFVNTKKNADMVAKNLDKL-----------G----- 538 (671)
Q Consensus 501 ---k------------------~~~L~~ll~~-----~~~~~iIVF~~~~~~~~~l~~~L~~~-----------~----- 538 (671)
+ .....++... ..+.++++.|.+...|..+.+.+... +
T Consensus 480 ~~~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 559 (962)
T COG0610 480 ILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDY 559 (962)
T ss_pred HHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHH
Confidence 0 0011111111 12456777777777444444433221 0
Q ss_pred -----CeEEEe--cCCCCHHHHHHHHHH--hhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCC-
Q 038133 539 -----YRVTTL--HGGKSQEQREISLEG--FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA- 608 (671)
Q Consensus 539 -----~~v~~l--hg~~~~~~R~~~l~~--F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~- 608 (671)
..-... |.. ........... ......++||.++++-+|.|.|.++++. +|-|.--...+|.+.|+.|.
T Consensus 560 ~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~ 637 (962)
T COG0610 560 NTEFETDFDKKQSHAK-LKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVF 637 (962)
T ss_pred HhhcccchhhhhhhHH-HHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCC
Confidence 000000 111 22333444445 3456789999999999999999999887 55666677899999999996
Q ss_pred -C-C-ccEEEEEec
Q 038133 609 -G-K-TGVATTFLT 619 (671)
Q Consensus 609 -G-~-~g~ai~~~~ 619 (671)
+ + .|..+.|..
T Consensus 638 ~~~K~~G~IVDf~g 651 (962)
T COG0610 638 PGKKKFGLIVDFRG 651 (962)
T ss_pred CCCCCCcEEEECcc
Confidence 3 2 366666665
No 165
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.22 E-value=7.8e-10 Score=124.85 Aligned_cols=288 Identities=17% Similarity=0.236 Sum_probs=176.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 369 (671)
-.++-+|+|||||.+.+.++-.++. ..+..+|++...+.|+.++...+....- .|+..-.-.++.
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~----------~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~---- 115 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALK----------NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDY---- 115 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhcc----------CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccc----
Confidence 3788899999999876554444332 2578899999999999987776654311 122211111111
Q ss_pred HHHHHh-cCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHH------HHHHHHhCCCCCCCCCCchhh
Q 038133 370 QGFRIR-QGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQ------VVGVLDAMPSSNLKPENEDEE 442 (671)
Q Consensus 370 ~~~~l~-~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~------i~~il~~l~~~~~~~~~~~~~ 442 (671)
.+. ...+-+++..+.|..... ..+.++++|||||+-..+..-|.+- +..++..+
T Consensus 116 ---~i~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~l------------- 176 (824)
T PF02399_consen 116 ---IIDGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKEL------------- 176 (824)
T ss_pred ---cccccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHH-------------
Confidence 111 135677888888755532 2367799999999987655433221 11112211
Q ss_pred hhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEec-------------------------
Q 038133 443 LDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK------------------------- 497 (671)
Q Consensus 443 ~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~------------------------- 497 (671)
-.....+|++-|++......+....-++..+..+...............++.
T Consensus 177 ---I~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 253 (824)
T PF02399_consen 177 ---IRNAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPK 253 (824)
T ss_pred ---HHhCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcC
Confidence 1114568999999999999998886654433333222111111111111100
Q ss_pred -----------cchhHHHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCC
Q 038133 498 -----------ESEKFSRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRY 565 (671)
Q Consensus 498 -----------~~~k~~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~ 565 (671)
.......+..++... .+..+-||+++...++.+++.....+..+.+++|..+..+. +.| +++
T Consensus 254 ~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~ 327 (824)
T PF02399_consen 254 HSPDPTATAAISNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKY 327 (824)
T ss_pred CCCccccccccccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cce
Confidence 001122233333333 36778899999999999999999999999999987665532 222 579
Q ss_pred cEEEecccccccCCCCCC--cEEEEc--CCC--CCHHHHHHHhcccCCCCCccEEEEEecCC
Q 038133 566 NVLVATDVAGRGIDIPDV--AHVINY--DMP--GNIEMYTHRIGRTGRAGKTGVATTFLTFH 621 (671)
Q Consensus 566 ~VLVaT~~~~~GiDIp~v--~~VI~~--d~p--~s~~~y~QriGR~gR~G~~g~ai~~~~~~ 621 (671)
+|++-|+++..|+++... +-|+-| .+. .++.+..|++||+-... ....++++...
T Consensus 328 ~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 328 DVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred eEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 999999999999999543 334444 222 24557899999986554 45566666543
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.13 E-value=5.3e-10 Score=116.29 Aligned_cols=75 Identities=24% Similarity=0.262 Sum_probs=58.6
Q ss_pred CCCCCcHHHHHHHH----HHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHH
Q 038133 270 GYKNPSPIQMAAIP----LGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345 (671)
Q Consensus 270 g~~~p~~~Q~~ai~----~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~ 345 (671)
.| .|+|.|.+.+. .+..|.++++.||||+|||+++++|++.++...+.. ..+.+++|+++|..+..|...
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00488 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHH
Confidence 45 46999999554 445788999999999999999999999987642210 023489999999999999877
Q ss_pred HHHHH
Q 038133 346 ETVKF 350 (671)
Q Consensus 346 ~~~k~ 350 (671)
.++++
T Consensus 80 ~l~~~ 84 (289)
T smart00488 80 ELRKL 84 (289)
T ss_pred HHHhc
Confidence 77665
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.13 E-value=5.3e-10 Score=116.29 Aligned_cols=75 Identities=24% Similarity=0.262 Sum_probs=58.6
Q ss_pred CCCCCcHHHHHHHH----HHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHH
Q 038133 270 GYKNPSPIQMAAIP----LGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345 (671)
Q Consensus 270 g~~~p~~~Q~~ai~----~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~ 345 (671)
.| .|+|.|.+.+. .+..|.++++.||||+|||+++++|++.++...+.. ..+.+++|+++|..+..|...
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00489 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHH
Confidence 45 46999999554 445788999999999999999999999987642210 023489999999999999877
Q ss_pred HHHHH
Q 038133 346 ETVKF 350 (671)
Q Consensus 346 ~~~k~ 350 (671)
.++++
T Consensus 80 ~l~~~ 84 (289)
T smart00489 80 ELRKL 84 (289)
T ss_pred HHHhc
Confidence 77665
No 168
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.08 E-value=3.5e-10 Score=102.47 Aligned_cols=138 Identities=16% Similarity=0.123 Sum_probs=77.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSI 367 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 367 (671)
|.-.++-..+|+|||.-.+.-++.... ..+.++|||+|||.++..+++.+ +..++++.....+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i----------~~~~rvLvL~PTRvva~em~~aL----~~~~~~~~t~~~~~-- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAI----------KRRLRVLVLAPTRVVAEEMYEAL----KGLPVRFHTNARMR-- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHH----------HTT--EEEEESSHHHHHHHHHHT----TTSSEEEESTTSS---
T ss_pred CceeEEecCCCCCCcccccHHHHHHHH----------HccCeEEEecccHHHHHHHHHHH----hcCCcccCceeeec--
Confidence 334678889999999865554444333 26889999999999998655544 34444433211111
Q ss_pred HHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhh
Q 038133 368 EEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKR 447 (671)
Q Consensus 368 ~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~ 447 (671)
....+.-|-|+|++.+...+.+ ...+.++++||+||||.+-... . ...+.+..+...
T Consensus 68 -----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s-I-A~rg~l~~~~~~--------------- 124 (148)
T PF07652_consen 68 -----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS-I-AARGYLRELAES--------------- 124 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH-H-HHHHHHHHHHHT---------------
T ss_pred -----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH-H-hhheeHHHhhhc---------------
Confidence 1234567899999999888866 4457899999999999642111 0 111222222111
Q ss_pred hcceEEEEeccCCHHHH
Q 038133 448 IYRTTYMFSATMPPAVE 464 (671)
Q Consensus 448 ~~~q~i~~SAT~~~~~~ 464 (671)
....++++|||+|-...
T Consensus 125 g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 125 GEAKVIFMTATPPGSED 141 (148)
T ss_dssp TS-EEEEEESS-TT---
T ss_pred cCeeEEEEeCCCCCCCC
Confidence 02468999999987643
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.00 E-value=1.3e-08 Score=103.38 Aligned_cols=130 Identities=25% Similarity=0.338 Sum_probs=98.8
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.|+ .|++.|.-++=.+..|+ |+...||-|||+++.+|+....+ .|..|-|++.+..||..-++++.
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-----------~G~~V~vvT~NdyLA~RD~~~~~ 139 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-----------QGKGVHVVTSNDYLAKRDAEEMR 139 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-----------TSS-EEEEESSHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-----------hcCCcEEEeccHHHhhccHHHHH
Confidence 344 78999998887776665 99999999999998888766654 58899999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHH-HHHhhcc------cccCCccEEEEcccchhh
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLI-DCLERRY------AVLNQCNYVVLDEADRMI 414 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~-~~l~~~~------~~l~~~~~vViDEah~~~ 414 (671)
.++..+|+++..+.++.+..+..... .|+|+++|...|. |+|..+. .....+.++||||+|.|+
T Consensus 140 ~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 140 PFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999999999998865543333 4789999999884 4443322 135688999999999764
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.98 E-value=3e-07 Score=107.18 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=57.7
Q ss_pred CCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCC-----CC----ccE-EEEEecCCCchHHHHHHHHH
Q 038133 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA-----GK----TGV-ATTFLTFHDTDVFYDLKQML 633 (671)
Q Consensus 564 ~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~-----G~----~g~-ai~~~~~~d~~~~~~l~~~l 633 (671)
..+.|++-+++.+|.|.|+|-+++-+....|...-.|.+||.-|. |. ... -.++......++...|...+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 567999999999999999999999999888999999999999884 21 122 23334455677888888888
Q ss_pred Hhc
Q 038133 634 IQS 636 (671)
Q Consensus 634 ~~~ 636 (671)
...
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 665
No 171
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.89 E-value=1.7e-08 Score=112.86 Aligned_cols=322 Identities=19% Similarity=0.185 Sum_probs=187.5
Q ss_pred HHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH-HHHHhhcCcE
Q 038133 279 MAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET-VKFAHYLGIK 357 (671)
Q Consensus 279 ~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~-~k~~~~~~i~ 357 (671)
...+..+..++-+++-++||.|||..+.-.+|..++... ..-..-+.+.-|++..|+-+.+.+ +..+...+
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns------~g~~~na~v~qprrisaisiaerva~er~e~~g-- 455 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS------NGASFNAVVSQPRRISAISLAERVANERGEEVG-- 455 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc------ccccccceeccccccchHHHHHHHHHhhHHhhc--
Confidence 334455566777999999999999999888888876522 122234678889998888665432 23333333
Q ss_pred EEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCC-
Q 038133 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKP- 436 (671)
Q Consensus 358 v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~- 436 (671)
-++|.....+-... +.---|..+|-+-|+.++++. +..+.++|+||.|..--. ...+..++..+......-
T Consensus 456 --~tvgy~vRf~Sa~p-rpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 456 --ETCGYNVRFDSATP-RPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred --cccccccccccccc-ccccceeeeccchhhhhhhhc---ccccccccchhhhhhccc--hHHHHHHHHhhhccchhhh
Confidence 22332222211100 112358999999999888754 567789999999964211 122333333333211100
Q ss_pred -------CCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccc-eeE-----------EEE---
Q 038133 437 -------ENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATEL-ISQ-----------HVV--- 494 (671)
Q Consensus 437 -------~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~-i~~-----------~~~--- 494 (671)
.+...-..-.....++.+.++|+|-. .+.......+.....+........ ... ...
T Consensus 528 v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq--~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~ 605 (1282)
T KOG0921|consen 528 VVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQ--SFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILC 605 (1282)
T ss_pred hhhhhcccchhhhhhhhccccceeeccccccHH--HHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccccc
Confidence 00001111122344556677776543 222222222221111111100000 000 000
Q ss_pred -------------Eeccch-hHHHHHHHHH----HhCCCcEEEEecChhhHHHHHHHHHHc-------CCeEEEecCCCC
Q 038133 495 -------------MMKESE-KFSRLQRLLD----ELGDKTAIVFVNTKKNADMVAKNLDKL-------GYRVTTLHGGKS 549 (671)
Q Consensus 495 -------------~~~~~~-k~~~L~~ll~----~~~~~~iIVF~~~~~~~~~l~~~L~~~-------~~~v~~lhg~~~ 549 (671)
...+.. -+..+..++. ..-.+-++||.+-...+-.|+..|... .+.+..+|+..+
T Consensus 606 dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~ 685 (1282)
T KOG0921|consen 606 DPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLT 685 (1282)
T ss_pred ChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcc
Confidence 000000 0111122222 122678999999999999999988654 467888999998
Q ss_pred HHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCC------------------CCHHHHHHHhcccCCCCCc
Q 038133 550 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP------------------GNIEMYTHRIGRTGRAGKT 611 (671)
Q Consensus 550 ~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p------------------~s~~~y~QriGR~gR~G~~ 611 (671)
..+...+.+....|..+++++|.++...|.|.++..||..+.. .|.....||.||+||. ++
T Consensus 686 ~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~ 764 (1282)
T KOG0921|consen 686 SQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RP 764 (1282)
T ss_pred cHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cc
Confidence 8888889888899999999999999999999887777744332 2556678999999997 57
Q ss_pred cEEEEEec
Q 038133 612 GVATTFLT 619 (671)
Q Consensus 612 g~ai~~~~ 619 (671)
|.|..+..
T Consensus 765 G~~f~lcs 772 (1282)
T KOG0921|consen 765 GFCFHLCS 772 (1282)
T ss_pred cccccccH
Confidence 77777654
No 172
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.67 E-value=8.2e-07 Score=99.81 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=60.1
Q ss_pred CCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCC--CCcc-----------EEEEEecCCCchHHHHH
Q 038133 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA--GKTG-----------VATTFLTFHDTDVFYDL 629 (671)
Q Consensus 563 g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~--G~~g-----------~ai~~~~~~d~~~~~~l 629 (671)
...+.+.+-.++-+|.|=|+|-+++-+....|..+=.|-+||.-|. ++.| .-.+++..++.++...|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3477999999999999999999999999999999999999999994 2333 33446667778888888
Q ss_pred HHHHHhc
Q 038133 630 KQMLIQS 636 (671)
Q Consensus 630 ~~~l~~~ 636 (671)
.+.+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 8876654
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.53 E-value=2e-06 Score=100.29 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=45.6
Q ss_pred HhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhC
Q 038133 374 IRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429 (671)
Q Consensus 374 l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l 429 (671)
+.....|+++||..|...+-.+.+.+..++.|||||||++....-+..+..+...-
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~ 59 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQK 59 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHh
Confidence 34457899999999988888888889999999999999998777666666665543
No 174
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.44 E-value=3.2e-06 Score=93.50 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=94.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcC------------------CeEEEecCCCCHHHHHHHHHHhhcCC---CcEEEecc
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKLG------------------YRVTTLHGGKSQEQREISLEGFRTKR---YNVLVATD 572 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~~------------------~~v~~lhg~~~~~~R~~~l~~F~~g~---~~VLVaT~ 572 (671)
+.++|||..+....+.+.+.|.+.. .....+.|..+..+|+..++.|++-. .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 4568999999999999999987641 23456788899999999999998732 34888999
Q ss_pred cccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHH
Q 038133 573 VAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYD 628 (671)
Q Consensus 573 ~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~ 628 (671)
....|||+-.++.+|.||.-|++..-.|.+-|+.|.|+..-|+++-.--|..+-..
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkk 854 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKK 854 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHH
Confidence 99999999999999999999999999999999999998877777765555443333
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.41 E-value=1.4e-06 Score=87.38 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHhCCCc-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 274 PSPIQMAAIPLGLQQRD-VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 274 p~~~Q~~ai~~il~~rd-~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
+.+.|.+|+..++.... .+|.||.|+|||.+... ++..+.... .......+.++||++||...+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~--~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRF--KSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccch--hhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57889999999999998 99999999999955433 333331000 000124788999999999999988887777
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.32 E-value=3.2e-07 Score=104.79 Aligned_cols=115 Identities=24% Similarity=0.334 Sum_probs=91.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIE 368 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 368 (671)
.+.++.+|||+|||.+|.+.++..+... .+.++++++|-.+|+..-.+.+.+....-|++++-+.|.....
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~---------p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd 1014 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYY---------PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPD 1014 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccC---------CCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCC
Confidence 4678889999999999999988877653 4688999999999998877777776655599999999987755
Q ss_pred HHHHHHhcCCeEEEEcchHHHHHHhh--cccccCCccEEEEcccchhhc
Q 038133 369 EQGFRIRQGCEVVIATPGRLIDCLER--RYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 369 ~~~~~l~~~~~IiI~Tp~~L~~~l~~--~~~~l~~~~~vViDEah~~~~ 415 (671)
-. -....+|+|+||++......+ ....+.+|+++|+||.|.+.+
T Consensus 1015 ~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1015 VK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred hh---heecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 22 234589999999998665552 234588999999999997644
No 177
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.22 E-value=2.4e-05 Score=85.77 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=69.5
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHH
Q 038133 265 AVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE 344 (671)
Q Consensus 265 ~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~ 344 (671)
.+...|+..+..-|+.|+.++|+..-.|++||+|+|||.+....+++.+.. .+..+||++|+...+.|++
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----------~~~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----------HAGPVLVCAPSNIAVDQLA 471 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh----------cCCceEEEcccchhHHHHH
Confidence 555568889999999999999999999999999999998766666665543 5677999999999999988
Q ss_pred HHHHHHHhhcCcEEEEEE
Q 038133 345 EETVKFAHYLGIKVVSIV 362 (671)
Q Consensus 345 ~~~~k~~~~~~i~v~~~~ 362 (671)
+.+.+ .|++|+-+.
T Consensus 472 eKIh~----tgLKVvRl~ 485 (935)
T KOG1802|consen 472 EKIHK----TGLKVVRLC 485 (935)
T ss_pred HHHHh----cCceEeeee
Confidence 87766 567777654
No 178
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.20 E-value=3.2e-06 Score=96.55 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHhC--C-CcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC-Cc-EEEecccc
Q 038133 500 EKFSRLQRLLDELG--D-KTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR-YN-VLVATDVA 574 (671)
Q Consensus 500 ~k~~~L~~ll~~~~--~-~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~-~~-VLVaT~~~ 574 (671)
.+...+..+|.... . +++|||+.-...++.+...|...+.....+.|.|+...|...+..|..+. .. .|++..+.
T Consensus 522 ~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag 601 (674)
T KOG1001|consen 522 SKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAG 601 (674)
T ss_pred hhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHh
Confidence 34444445554321 2 48999999999999999999988999999999999999999999999654 33 44578999
Q ss_pred cccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEE
Q 038133 575 GRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 616 (671)
Q Consensus 575 ~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~ 616 (671)
+.|+++..+++|+..|+.|++..--|.|-|+.|.|+.-.+.+
T Consensus 602 ~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 602 KVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999999999999999999997654443
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.13 E-value=1.6e-05 Score=78.07 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=67.3
Q ss_pred CCcHHHHHHHHHHhCCC--cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQR--DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~r--d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
.+++-|.+|+..++.+. -+++.|+.|+|||.+ +..+...+.. .+..+++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~----------~g~~v~~~apT~~Aa~~L~~~---- 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA----------AGKRVIGLAPTNKAAKELREK---- 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH----------TT--EEEEESSHHHHHHHHHH----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh----------CCCeEEEECCcHHHHHHHHHh----
Confidence 36789999999998544 477889999999975 3444444432 578999999999988864443
Q ss_pred HhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc----ccCCccEEEEcccchhhccCChHHHHHHH
Q 038133 351 AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA----VLNQCNYVVLDEADRMIDMGFEPQVVGVL 426 (671)
Q Consensus 351 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~----~l~~~~~vViDEah~~~~~~f~~~i~~il 426 (671)
.++.+ .|-..++........ .+...++||||||-.+. ...+..++
T Consensus 66 ---~~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll 114 (196)
T PF13604_consen 66 ---TGIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLL 114 (196)
T ss_dssp ---HTS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHH
T ss_pred ---hCcch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHH
Confidence 22222 222221111111110 15567899999999763 34566777
Q ss_pred HhCCC
Q 038133 427 DAMPS 431 (671)
Q Consensus 427 ~~l~~ 431 (671)
..++.
T Consensus 115 ~~~~~ 119 (196)
T PF13604_consen 115 RLAKK 119 (196)
T ss_dssp HHS-T
T ss_pred HHHHh
Confidence 77665
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.12 E-value=5.8e-06 Score=79.03 Aligned_cols=111 Identities=21% Similarity=0.243 Sum_probs=74.5
Q ss_pred HHHHHhCCCcEEEEecChhhHHHHHHHHHHcCC--eEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc--cccccCCCCC
Q 038133 507 RLLDELGDKTAIVFVNTKKNADMVAKNLDKLGY--RVTTLHGGKSQEQREISLEGFRTKRYNVLVATD--VAGRGIDIPD 582 (671)
Q Consensus 507 ~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~--~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~--~~~~GiDIp~ 582 (671)
++++. .++.+|||++|...++.+.+.+..... .+.++.. +......+++.|+.+.-.||+|+. .+++|||+|+
T Consensus 3 ~l~~~-~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISA-VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHC-CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhc-CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 44444 368999999999999999999987631 1122222 245678899999999999999998 9999999997
Q ss_pred --CcEEEEcCCCCC----H--------------------------HHHHHHhcccCCCCCccEEEEEecC
Q 038133 583 --VAHVINYDMPGN----I--------------------------EMYTHRIGRTGRAGKTGVATTFLTF 620 (671)
Q Consensus 583 --v~~VI~~d~p~s----~--------------------------~~y~QriGR~gR~G~~g~ai~~~~~ 620 (671)
++.||....|.. + ....|.+||+-|...+--++++++.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 778998888741 1 1135999999999776445555543
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.05 E-value=2.8e-05 Score=76.13 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=70.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH-------H
Q 038133 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI-------E 344 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi-------~ 344 (671)
...++.|..++..++...-+++.||.|||||+.++..++..+.. +.-.+++|+-|+.+....+ .
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~---------g~~~kiii~Rp~v~~~~~lGflpG~~~ 73 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE---------GEYDKIIITRPPVEAGEDLGFLPGDLE 73 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT---------TS-SEEEEEE-S--TT----SS-----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh---------CCCcEEEEEecCCCCccccccCCCCHH
Confidence 34678999999999988889999999999999999999998864 3567888988887643211 0
Q ss_pred HHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHH
Q 038133 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 424 (671)
Q Consensus 345 ~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~ 424 (671)
+.+.-++.++--....+.+. +....+.....|-+.++..+. .. .+. -.+||||||+.+ -..++..
T Consensus 74 eK~~p~~~p~~d~l~~~~~~----~~~~~~~~~~~Ie~~~~~~iR-----Gr-t~~-~~~iIvDEaQN~----t~~~~k~ 138 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELFGK----EKLEELIQNGKIEIEPLAFIR-----GR-TFD-NAFIIVDEAQNL----TPEELKM 138 (205)
T ss_dssp ----TTTHHHHHHHTTTS-T----TCHHHHHHTTSEEEEEGGGGT-----T---B--SEEEEE-SGGG------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCh----HhHHHHhhcCeEEEEehhhhc-----Cc-ccc-ceEEEEecccCC----CHHHHHH
Confidence 11110000000000000011 111222334556666654431 11 133 279999999987 3456667
Q ss_pred HHHhCCC
Q 038133 425 VLDAMPS 431 (671)
Q Consensus 425 il~~l~~ 431 (671)
++..+..
T Consensus 139 ilTR~g~ 145 (205)
T PF02562_consen 139 ILTRIGE 145 (205)
T ss_dssp HHTTB-T
T ss_pred HHcccCC
Confidence 7777654
No 182
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.96 E-value=6.8e-05 Score=86.40 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHhCC-CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQ-RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~-rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
..+.+.|..|+..++.. ..+++.||+|+|||.+....+...+. .|+++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~-----------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK-----------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 36789999999999876 56889999999999766554544442 477999999999999987776654
No 183
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.93 E-value=4.3e-05 Score=83.63 Aligned_cols=63 Identities=25% Similarity=0.356 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQRD-VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEE 346 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd-~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~ 346 (671)
.+.+-|.+|+......++ .++.||+|+|||.+....+...+. .+.++||++||.+-+..+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk-----------~~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK-----------QKKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-----------cCCeEEEEcCchHHHHHHHHH
Confidence 567889999999998866 688899999999887776666664 589999999999999877764
No 184
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=7.8e-05 Score=81.21 Aligned_cols=112 Identities=15% Similarity=0.070 Sum_probs=60.9
Q ss_pred EEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH-hhcCcEEEEEECCCchHH--
Q 038133 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA-HYLGIKVVSIVGGQSIEE-- 369 (671)
Q Consensus 293 i~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~-~~~~i~v~~~~gg~~~~~-- 369 (671)
..+.||||||++....+|.+... .-...|+.|....+.......+..-. ..+=+.-...+++...+-
T Consensus 2 f~matgsgkt~~ma~lil~~y~k----------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikk 71 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK----------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKK 71 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh----------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeee
Confidence 35789999999887777776642 22346777776666654333221110 000001111111111110
Q ss_pred --HHHHHhcCCeEEEEcchHHHHHHhhccc------ccCCccE-EEEcccchhh
Q 038133 370 --QGFRIRQGCEVVIATPGRLIDCLERRYA------VLNQCNY-VVLDEADRMI 414 (671)
Q Consensus 370 --~~~~l~~~~~IiI~Tp~~L~~~l~~~~~------~l~~~~~-vViDEah~~~ 414 (671)
.......+.+|+++|-+.|...+.+... .+.+..+ ++-||||++-
T Consensus 72 vn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 72 VNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred ecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 0011235789999999999777654322 3445555 5569999984
No 185
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.79 E-value=0.00021 Score=73.26 Aligned_cols=161 Identities=19% Similarity=0.127 Sum_probs=98.4
Q ss_pred CCcHHHHHHHHHHhC----------CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 273 NPSPIQMAAIPLGLQ----------QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~----------~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
.++..|.+++-...+ ....++-..||.||--...-.++..... ...++|++..+..|-..
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~----------Gr~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR----------GRKRAVWVSVSNDLKYD 106 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc----------CCCceEEEECChhhhhH
Confidence 367778887765542 3456777799999986555555555442 23469999999999988
Q ss_pred HHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc---cccc---------CCccEEEEccc
Q 038133 343 IEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR---YAVL---------NQCNYVVLDEA 410 (671)
Q Consensus 343 i~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~---~~~l---------~~~~~vViDEa 410 (671)
..+.+..+... .+.+..+..-... ......-.||++|+..|...-... ..-+ ..=++||||||
T Consensus 107 a~RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEc 181 (303)
T PF13872_consen 107 AERDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDEC 181 (303)
T ss_pred HHHHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccc
Confidence 77777765432 2333333221110 111224569999999987664321 0001 12258999999
Q ss_pred chhhccCCh--------HHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHH
Q 038133 411 DRMIDMGFE--------PQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERL 466 (671)
Q Consensus 411 h~~~~~~f~--------~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l 466 (671)
|.+.+..-. ..+..+...+|. ..++.+|||-.....++
T Consensus 182 H~akn~~~~~~~~sk~g~avl~LQ~~LP~------------------ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 182 HKAKNLSSGSKKPSKTGIAVLELQNRLPN------------------ARVVYASATGASEPRNM 227 (303)
T ss_pred hhcCCCCccCccccHHHHHHHHHHHhCCC------------------CcEEEecccccCCCcee
Confidence 998765431 233444555554 34899999977665544
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.78 E-value=7.6e-05 Score=80.28 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=68.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 369 (671)
-++|.|..|||||++++-.+.... ....+..+++++++..|...+...+..-..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~---------~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQ---------NSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------- 56 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhh---------ccccCCceEEEEecchHHHHHHHHHhhhcc-----------------
Confidence 378999999999987665554431 113688899999999999877766655320
Q ss_pred HHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC-------ChHHHHHHHHh
Q 038133 370 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG-------FEPQVVGVLDA 428 (671)
Q Consensus 370 ~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~-------f~~~i~~il~~ 428 (671)
.......+..+..+...+.........+++|||||||+|...+ ...++..++..
T Consensus 57 -----~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 -----PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -----cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0011233444444444333222346789999999999997731 23555566554
No 187
>PRK10536 hypothetical protein; Provisional
Probab=97.73 E-value=0.00049 Score=69.38 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=46.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhh
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~L 339 (671)
.+....+..|..++..+.++..+++.||+|+|||+.++..++..+.. +.-.+++|.=|+...
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~---------~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH---------KDVDRIIVTRPVLQA 116 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc---------CCeeEEEEeCCCCCc
Confidence 34556778899999988888889999999999999888877766542 134456666666543
No 188
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.64 E-value=0.00093 Score=66.14 Aligned_cols=150 Identities=19% Similarity=0.291 Sum_probs=89.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC---CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCC-
Q 038133 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQ---QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEG- 327 (671)
Q Consensus 252 ~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~---~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g- 327 (671)
+|+....|..++=-+.. + -..+|.|.+....+.+ |.+.+...-+|.|||.+ ++|++..+.. +|
T Consensus 4 ~w~p~~~P~wLl~E~e~-~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA----------dg~ 70 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-N-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA----------DGS 70 (229)
T ss_pred CCCchhChHHHHHHHHc-C-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc----------CCC
Confidence 45544455444333321 1 2678999998888875 57899999999999965 6788887764 34
Q ss_pred CeEEEEecchhhHHHHHHHHHHHHhhc-CcEE--EEEECCCchHH----HHH----HHhcCCeEEEEcchHHHHHHhhc-
Q 038133 328 PYAVVMAPTRELAQQIEEETVKFAHYL-GIKV--VSIVGGQSIEE----QGF----RIRQGCEVVIATPGRLIDCLERR- 395 (671)
Q Consensus 328 ~~vLil~Ptr~La~Qi~~~~~k~~~~~-~i~v--~~~~gg~~~~~----~~~----~l~~~~~IiI~Tp~~L~~~l~~~- 395 (671)
.-+.++|| +.|..|....+...+..+ +-++ .-......... ... .......|+++||+.++.+.-..
T Consensus 71 ~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~l 149 (229)
T PF12340_consen 71 RLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGL 149 (229)
T ss_pred cEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHH
Confidence 44556666 568888888776654432 2222 22222222211 111 12235679999999985433111
Q ss_pred ------c-----------cccCCccEEEEcccchhhc
Q 038133 396 ------Y-----------AVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 396 ------~-----------~~l~~~~~vViDEah~~~~ 415 (671)
. ..+...+-=|+||+|..+.
T Consensus 150 e~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 150 ERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 0133445578999997644
No 189
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.64 E-value=0.00022 Score=81.12 Aligned_cols=139 Identities=23% Similarity=0.297 Sum_probs=89.0
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCC------CC-------------------ccc
Q 038133 273 NPSPIQMAAIPLGL----QQRDVIGIAETGSGKTAAFVLPMLTYISRLPP------IS-------------------EEN 323 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~------~~-------------------~~~ 323 (671)
+|+|.|...+..++ ...+.++-.|||+|||++.|-..|.|...... +. .+.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 68999998877776 45779999999999999888888887754320 00 000
Q ss_pred cc------CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEEC----------------------------------
Q 038133 324 EA------EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVG---------------------------------- 363 (671)
Q Consensus 324 ~~------~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~g---------------------------------- 363 (671)
.. ..|++.|-.-|..-..|+.+++++..-. ++.+++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 01 2466777777777777887877775422 22111100
Q ss_pred ---------------C-CchHH--------------HHHHHhcCCeEEEEcchHHHHHHhhccc--ccCCccEEEEcccc
Q 038133 364 ---------------G-QSIEE--------------QGFRIRQGCEVVIATPGRLIDCLERRYA--VLNQCNYVVLDEAD 411 (671)
Q Consensus 364 ---------------g-~~~~~--------------~~~~l~~~~~IiI~Tp~~L~~~l~~~~~--~l~~~~~vViDEah 411 (671)
+ ..+++ ....+...++||+|-+..|+|-.-+... .|. =.+|||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lk-nsIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLK-NSIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhcccccccc-ccEEEEeccc
Confidence 0 00111 1123445789999999999988776653 333 3689999999
Q ss_pred hhh
Q 038133 412 RMI 414 (671)
Q Consensus 412 ~~~ 414 (671)
.|-
T Consensus 258 NiE 260 (945)
T KOG1132|consen 258 NIE 260 (945)
T ss_pred cHH
Confidence 874
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.57 E-value=0.00024 Score=58.23 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
+.-+++.||.|||||...+-.+..++... . ..+..++|++||+..+..+.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~------~-~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAAR------A-DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHh------c-CCCCeEEEECCCHHHHHHHHHHH
Confidence 33466699999999977666665555210 1 12778999999999999776665
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.47 E-value=0.001 Score=76.01 Aligned_cols=72 Identities=24% Similarity=0.219 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 274 p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
..++|+.|+-..+.++-+++.|++|+|||.+.... +..+.... ......+++++||---|..+.+.+.....
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~l-l~~l~~~~------~~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKL-LAALIQLA------DGERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH-HHHHHHhc------CCCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 35899999999999999999999999999764332 22232210 11245789999999999887776655443
No 192
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.47 E-value=0.0014 Score=76.97 Aligned_cols=65 Identities=25% Similarity=0.250 Sum_probs=49.6
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCC--CeEEEEecchhhHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEG--PYAVVMAPTRELAQQIEE 345 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g--~~vLil~Ptr~La~Qi~~ 345 (671)
.++ .+++-|.+|+..+..++-+++.|+.|+|||.+. ..++..+.. .+ ..+++++||-..|..+.+
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~----------~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEE----------LGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHH----------cCCCceEEEEeCchHHHHHHHH
Confidence 444 789999999999999999999999999999654 334444432 23 578899999888875433
No 193
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.46 E-value=0.0014 Score=78.42 Aligned_cols=60 Identities=22% Similarity=0.074 Sum_probs=47.4
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 273 NPSPIQMAAIPLGLQQRD-VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd-~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
.+++-|.+|+..++.+++ +++.|..|+|||.+ +..+...+. ..|..++.++||--.|..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e----------~~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE----------AAGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH----------HcCCeEEEecCcHHHHHHH
Confidence 689999999999998654 78999999999975 444444443 2588899999998777644
No 194
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.46 E-value=0.0014 Score=74.81 Aligned_cols=132 Identities=22% Similarity=0.231 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcC
Q 038133 276 PIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLG 355 (671)
Q Consensus 276 ~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~ 355 (671)
++|+.|+..++.++-+++.|+.|+|||.+... ++..+.... ....+..+++++||---|..+.+.+......++
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~-----~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~ 221 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQS-----PKQGKLRIALAAPTGKAAARLAESLRKAVKNLA 221 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhc-----cccCCCcEEEECCcHHHHHHHHHHHHhhhcccc
Confidence 79999999999999999999999999975433 333332210 001135799999999888877766655433222
Q ss_pred cEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHh------hcccccCCccEEEEcccchhhccCChHHHHHHHHhC
Q 038133 356 IKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLE------RRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429 (671)
Q Consensus 356 i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~------~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l 429 (671)
.. .. +.....+-..|-.+|+.... ......-.+++||||||-++ + .+.+..++..+
T Consensus 222 ~~----------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al 283 (586)
T TIGR01447 222 AA----------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKAL 283 (586)
T ss_pred cc----------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhc
Confidence 11 00 00111122334333332211 00112335789999999854 3 23455677777
Q ss_pred CC
Q 038133 430 PS 431 (671)
Q Consensus 430 ~~ 431 (671)
+.
T Consensus 284 ~~ 285 (586)
T TIGR01447 284 PP 285 (586)
T ss_pred CC
Confidence 64
No 195
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.013 Score=63.46 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=89.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEE-EEecc-hhhHHHHHHHHHHHHhhcCcEEEEEECCC
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAV-VMAPT-RELAQQIEEETVKFAHYLGIKVVSIVGGQ 365 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vL-il~Pt-r~La~Qi~~~~~k~~~~~~i~v~~~~gg~ 365 (671)
.+.++++||||+|||.+..-.+..+.... ...+..+. |-+.| |.-|. ..+..++..+|+.+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~-------~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~~---- 239 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS-------DDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKAI---- 239 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh-------ccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEee----
Confidence 35689999999999987655444333210 01234443 44443 33333 23566666666654221
Q ss_pred chHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC-ChHHHHHHHHhCCCCCCCCCCchhhhh
Q 038133 366 SIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG-FEPQVVGVLDAMPSSNLKPENEDEELD 444 (671)
Q Consensus 366 ~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~-f~~~i~~il~~l~~~~~~~~~~~~~~~ 444 (671)
.++..+...+.. +..+++|+||++.++.... ....+..++......
T Consensus 240 -----------------~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~------------ 286 (388)
T PRK12723 240 -----------------ESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRD------------ 286 (388)
T ss_pred -----------------CcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCC------------
Confidence 233444444432 5679999999999874211 112333444433210
Q ss_pred hhhhcceEEEEeccCCHH-HHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecC
Q 038133 445 EKRIYRTTYMFSATMPPA-VERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNT 523 (671)
Q Consensus 445 ~~~~~~q~i~~SAT~~~~-~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~ 523 (671)
....+.+|||.... +......|-.-+ ...-.+..+++..+.-.+..++... +-|+..+++.
T Consensus 287 ----~e~~LVlsat~~~~~~~~~~~~~~~~~-------------~~~~I~TKlDet~~~G~~l~~~~~~-~~Pi~yit~G 348 (388)
T PRK12723 287 ----AEFHLAVSSTTKTSDVKEIFHQFSPFS-------------YKTVIFTKLDETTCVGNLISLIYEM-RKEVSYVTDG 348 (388)
T ss_pred ----CeEEEEEcCCCCHHHHHHHHHHhcCCC-------------CCEEEEEeccCCCcchHHHHHHHHH-CCCEEEEeCC
Confidence 23567889998643 444445552211 1111233456666677777777664 3455444443
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.28 E-value=0.0018 Score=76.13 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHhCC-CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 273 NPSPIQMAAIPLGLQQ-RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~-rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
.+++-|..|+..++.+ +-+++.|+.|+|||.+. -.+...+. ..|..+++++||--.|..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~----------~~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWE----------AAGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHH----------hCCCeEEEEeCcHHHHHHH
Confidence 6899999999999874 56899999999999653 33444333 2578899999998777654
No 197
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.20 E-value=0.0021 Score=74.10 Aligned_cols=136 Identities=20% Similarity=0.222 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCc-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEe
Q 038133 256 GKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRD-VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA 334 (671)
Q Consensus 256 ~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd-~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~ 334 (671)
..+.|.+.+. -+..+..-|++|+..++..+| .+|.|=+|+|||.+....+-..+ ..|++||+.+
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~-----------~~gkkVLLts 720 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV-----------ALGKKVLLTS 720 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH-----------HcCCeEEEEe
Confidence 3455555553 234677889999999998877 78889999999965443332222 2588999999
Q ss_pred cchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHH-----------------HHHhcCCeEEEEcchHHHHHHhhccc
Q 038133 335 PTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQG-----------------FRIRQGCEVVIATPGRLIDCLERRYA 397 (671)
Q Consensus 335 Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~-----------------~~l~~~~~IiI~Tp~~L~~~l~~~~~ 397 (671)
=|...+..+.-.+.. +++.+.-+-.+.....+. ....+...||.+|--.+.+.+.
T Consensus 721 yThsAVDNILiKL~~----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf---- 792 (1100)
T KOG1805|consen 721 YTHSAVDNILIKLKG----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF---- 792 (1100)
T ss_pred hhhHHHHHHHHHHhc----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----
Confidence 888777754433333 444433332222221111 1233457788888554443332
Q ss_pred ccCCccEEEEcccchhh
Q 038133 398 VLNQCNYVVLDEADRMI 414 (671)
Q Consensus 398 ~l~~~~~vViDEah~~~ 414 (671)
...+|+|.|||||-.+.
T Consensus 793 ~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 793 VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred hccccCEEEEccccccc
Confidence 35679999999999763
No 198
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0039 Score=66.84 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=88.7
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCC-CeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCC
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEG-PYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQ 365 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g-~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~ 365 (671)
.+..++++||||+|||......+..++.. .| .++.++. +...-.--.+.+..++..+++.+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~----------~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~---- 200 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR----------FGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAV---- 200 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh----------cCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEec----
Confidence 45679999999999998766655544432 23 3444333 33221111234555555566544332
Q ss_pred chHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhh
Q 038133 366 SIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445 (671)
Q Consensus 366 ~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~ 445 (671)
.+++.+...+. .+.++++|+||.+-+.- +...+...+..+..... +
T Consensus 201 -----------------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~---~d~~l~e~La~L~~~~~-~--------- 246 (374)
T PRK14722 201 -----------------KDGGDLQLALA----ELRNKHMVLIDTIGMSQ---RDRTVSDQIAMLHGADT-P--------- 246 (374)
T ss_pred -----------------CCcccHHHHHH----HhcCCCEEEEcCCCCCc---ccHHHHHHHHHHhccCC-C---------
Confidence 33333333332 25677899999986542 11222233333321100 0
Q ss_pred hhhcceEEEEeccCCHHH-HHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecC
Q 038133 446 KRIYRTTYMFSATMPPAV-ERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNT 523 (671)
Q Consensus 446 ~~~~~q~i~~SAT~~~~~-~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~ 523 (671)
...++.+|||..... ...+..|...... ..+ .......-.+..+++..+.-.++.++... +-|+..+.+.
T Consensus 247 ---~~~lLVLsAts~~~~l~evi~~f~~~~~~-p~~---~~~~~~~~I~TKlDEt~~~G~~l~~~~~~-~lPi~yvt~G 317 (374)
T PRK14722 247 ---VQRLLLLNATSHGDTLNEVVQAYRSAAGQ-PKA---ALPDLAGCILTKLDEASNLGGVLDTVIRY-KLPVHYVSTG 317 (374)
T ss_pred ---CeEEEEecCccChHHHHHHHHHHHHhhcc-ccc---ccCCCCEEEEeccccCCCccHHHHHHHHH-CcCeEEEecC
Confidence 244778899986554 3455555332100 000 00001112334456666676777777664 4455555544
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.16 E-value=0.0027 Score=57.51 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l 310 (671)
++.+++.|++|+|||.+.-..+-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999976544443
No 200
>PRK04296 thymidine kinase; Provisional
Probab=97.11 E-value=0.0015 Score=63.78 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=26.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
-.++.||+|+|||..++-.+..+.. .+.+++|+-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~-----------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEE-----------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-----------cCCeEEEEec
Confidence 4788999999999776665555442 5778888877
No 201
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.09 E-value=0.0038 Score=57.69 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCC------eEEEecCCCCHHHHHHHHHHhhcCC-CcEEEecccccccCCCCC--CcEEEEcCCCCC---
Q 038133 527 ADMVAKNLDKLGY------RVTTLHGGKSQEQREISLEGFRTKR-YNVLVATDVAGRGIDIPD--VAHVINYDMPGN--- 594 (671)
Q Consensus 527 ~~~l~~~L~~~~~------~v~~lhg~~~~~~R~~~l~~F~~g~-~~VLVaT~~~~~GiDIp~--v~~VI~~d~p~s--- 594 (671)
++.++..+...+. ...++.-+.+..+...+++.|+... ..||++|..+++|||+|+ ++.||...+|..
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 4455555554432 2334444455556788999998754 379999988999999998 567887776631
Q ss_pred ----------------------------HHHHHHHhcccCCCCCccEEEEEec
Q 038133 595 ----------------------------IEMYTHRIGRTGRAGKTGVATTFLT 619 (671)
Q Consensus 595 ----------------------------~~~y~QriGR~gR~G~~g~ai~~~~ 619 (671)
+....|.+||+-|...+--++++++
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1224589999999876544455443
No 202
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.02 E-value=0.002 Score=67.72 Aligned_cols=123 Identities=19% Similarity=0.125 Sum_probs=76.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhh
Q 038133 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHY 353 (671)
Q Consensus 274 p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~ 353 (671)
+++-|.++|.. ...+++|.|..|||||.+.+.-+...+.... .....+|++++|+..|..+.+.+...+..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-------~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-------VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-------STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-------CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 46778888877 6678999999999999987766665554321 24566999999999999988888876554
Q ss_pred cCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccC--CccEEEEcccc
Q 038133 354 LGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLN--QCNYVVLDEAD 411 (671)
Q Consensus 354 ~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~--~~~~vViDEah 411 (671)
..... ............-..+.|+|...+...+-+...... .-.+-++|+..
T Consensus 72 ~~~~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 72 EQQES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CCHCC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccccc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 32100 000011112223457889998887665543332222 23567777776
No 203
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.99 E-value=0.0083 Score=72.38 Aligned_cols=74 Identities=22% Similarity=0.076 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecc
Q 038133 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQ-QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPT 336 (671)
Q Consensus 258 l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~-~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Pt 336 (671)
.++..+......++ .+++-|.+|+..+.. ++-+++.|+.|+|||.+ +.++...+. ..|..++.++||
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e----------~~G~~V~g~ApT 434 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWE----------AAGYRVVGGALA 434 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHH----------HcCCeEEEEcCc
Confidence 34444444333333 789999999998864 45689999999999965 344444443 258889999999
Q ss_pred hhhHHHH
Q 038133 337 RELAQQI 343 (671)
Q Consensus 337 r~La~Qi 343 (671)
---|..+
T Consensus 435 gkAA~~L 441 (1102)
T PRK13826 435 GKAAEGL 441 (1102)
T ss_pred HHHHHHH
Confidence 8777654
No 204
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.91 E-value=0.0048 Score=57.14 Aligned_cols=93 Identities=24% Similarity=0.292 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCC---eEEEecCCCCHHHHHHHHHHhhcCCC---cEEEeccc--ccccCCCCC--CcEEEEcCCCC---
Q 038133 527 ADMVAKNLDKLGY---RVTTLHGGKSQEQREISLEGFRTKRY---NVLVATDV--AGRGIDIPD--VAHVINYDMPG--- 593 (671)
Q Consensus 527 ~~~l~~~L~~~~~---~v~~lhg~~~~~~R~~~l~~F~~g~~---~VLVaT~~--~~~GiDIp~--v~~VI~~d~p~--- 593 (671)
.+.+++.+...+. ...++.-+....+...+++.|+.... .||+++.- +++|||+|+ ++.||...+|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4556666665432 12233333333345678888987543 58888876 999999998 57888777763
Q ss_pred -C---------------------------HHHHHHHhcccCCCCCccEEEEEec
Q 038133 594 -N---------------------------IEMYTHRIGRTGRAGKTGVATTFLT 619 (671)
Q Consensus 594 -s---------------------------~~~y~QriGR~gR~G~~g~ai~~~~ 619 (671)
+ +....|.+||+-|...+--++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 1123599999999876644555554
No 205
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.90 E-value=0.015 Score=56.94 Aligned_cols=172 Identities=19% Similarity=0.164 Sum_probs=87.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEE-EEecc-hhhHHHHHHHHHHHHhhcCcEEEEEECCCch
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAV-VMAPT-RELAQQIEEETVKFAHYLGIKVVSIVGGQSI 367 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vL-il~Pt-r~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 367 (671)
-++++||||+|||.+..-.+..+.. .+.++. |.+-| |.=|. +.++.++..+++.+.........
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~-----------~~~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~~ 68 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKL-----------KGKKVALISADTYRIGAV---EQLKTYAEILGVPFYVARTESDP 68 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-----------TT--EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSCH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhh-----------ccccceeecCCCCCccHH---HHHHHHHHHhccccchhhcchhh
Confidence 3789999999999876665555443 244444 44433 33333 56777888888776553332221
Q ss_pred HHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhh-ccCChHHHHHHHHhCCCCCCCCCCchhhhhhh
Q 038133 368 EEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI-DMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446 (671)
Q Consensus 368 ~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~-~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~ 446 (671)
.+. +.+.+.. ....++++|+||=+-+.. +......+..++..+..
T Consensus 69 ~~~-----------------~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~--------------- 114 (196)
T PF00448_consen 69 AEI-----------------AREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNP--------------- 114 (196)
T ss_dssp HHH-----------------HHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSS---------------
T ss_pred HHH-----------------HHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCC---------------
Confidence 111 1112211 113456777777776532 11223344455555432
Q ss_pred hhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecCh
Q 038133 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTK 524 (671)
Q Consensus 447 ~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~ 524 (671)
....+.+|||+.......+..+.... ..-.-.+..+++..+.-.+..++... +-|+-.+++..
T Consensus 115 --~~~~LVlsa~~~~~~~~~~~~~~~~~------------~~~~lIlTKlDet~~~G~~l~~~~~~-~~Pi~~it~Gq 177 (196)
T PF00448_consen 115 --DEVHLVLSATMGQEDLEQALAFYEAF------------GIDGLILTKLDETARLGALLSLAYES-GLPISYITTGQ 177 (196)
T ss_dssp --SEEEEEEEGGGGGHHHHHHHHHHHHS------------STCEEEEESTTSSSTTHHHHHHHHHH-TSEEEEEESSS
T ss_pred --ccceEEEecccChHHHHHHHHHhhcc------------cCceEEEEeecCCCCcccceeHHHHh-CCCeEEEECCC
Confidence 35577889998776554444442210 00011223345566666666666663 45555555443
No 206
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.064 Score=57.61 Aligned_cols=168 Identities=14% Similarity=0.213 Sum_probs=85.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec-c-h-hhHHHHHHHHHHHHhhcCcEEEEEECCC
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP-T-R-ELAQQIEEETVKFAHYLGIKVVSIVGGQ 365 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P-t-r-~La~Qi~~~~~k~~~~~~i~v~~~~gg~ 365 (671)
+.++++||||+|||......+..+. ..|..+.++.. + | ..+.| +..++...++.+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-----------~~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv~v----- 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-----------GKKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVIA----- 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-----------HcCCcEEEEecCCcchHHHHH----HHHHhhhcCCcEEe-----
Confidence 5689999999999976655554332 14555554443 3 3 12333 34444444443322
Q ss_pred chHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhh
Q 038133 366 SIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445 (671)
Q Consensus 366 ~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~ 445 (671)
+.+|..+.+.+..... ..++++|+||-+-+.... ...+..+...+.... |
T Consensus 302 ----------------~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~--P--------- 351 (436)
T PRK11889 302 ----------------VRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRA--SETVEEMIETMGQVE--P--------- 351 (436)
T ss_pred ----------------cCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcC--C---------
Confidence 2355566555532111 125789999988765321 122333322221110 1
Q ss_pred hhhcceEEEEeccCCH-HHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecC
Q 038133 446 KRIYRTTYMFSATMPP-AVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNT 523 (671)
Q Consensus 446 ~~~~~q~i~~SAT~~~-~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~ 523 (671)
...++.+|||... ....++..|-.-+ .-.-.+.-+++..+.-.++.++... +-|+..+.+.
T Consensus 352 ---devlLVLsATtk~~d~~~i~~~F~~~~-------------idglI~TKLDET~k~G~iLni~~~~-~lPIsyit~G 413 (436)
T PRK11889 352 ---DYICLTLSASMKSKDMIEIITNFKDIH-------------IDGIVFTKFDETASSGELLKIPAVS-SAPIVLMTDG 413 (436)
T ss_pred ---CeEEEEECCccChHHHHHHHHHhcCCC-------------CCEEEEEcccCCCCccHHHHHHHHH-CcCEEEEeCC
Confidence 2335668887654 4466666653211 1111233445666666677776664 4555555543
No 207
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.85 E-value=0.012 Score=63.75 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=49.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCC-------eEEEecCCCCHHHHHHHHHHhh----cCCCcEE--EecccccccCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKLGY-------RVTTLHGGKSQEQREISLEGFR----TKRYNVL--VATDVAGRGIDI 580 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~~~-------~v~~lhg~~~~~~R~~~l~~F~----~g~~~VL--VaT~~~~~GiDI 580 (671)
++.+++|..+.-..+.++......|+ +...+ +.-...+-..+++.++ +|.--|| ||-.-.++|||+
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fI-etpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF 608 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFI-ETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDF 608 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEE-eCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccc
Confidence 45688899888888777766555432 22222 2222222234444443 4555566 566778999999
Q ss_pred CCCc--EEEEcCCCC
Q 038133 581 PDVA--HVINYDMPG 593 (671)
Q Consensus 581 p~v~--~VI~~d~p~ 593 (671)
.+-. .||.++.|.
T Consensus 609 ~hhyGR~ViM~gIP~ 623 (755)
T KOG1131|consen 609 DHHYGREVIMEGIPY 623 (755)
T ss_pred ccccCceEEEEeccc
Confidence 7755 899998886
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=96.80 E-value=0.023 Score=60.29 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=72.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecc--hh-hHHHHHHHHHHHHhhcCcEEEEEECCC
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPT--RE-LAQQIEEETVKFAHYLGIKVVSIVGGQ 365 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Pt--r~-La~Qi~~~~~k~~~~~~i~v~~~~gg~ 365 (671)
.-++++|++|+|||.+....+ .++.. .|..++++... |. ...| +..++..+|+.+.....+.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~----------~g~~V~li~~Dt~R~~a~eq----L~~~a~~lgv~v~~~~~g~ 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK----------NGFSVVIAAGDTFRAGAIEQ----LEEHAERLGVKVIKHKYGA 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH----------cCCeEEEecCCcCcHHHHHH----HHHHHHHcCCceecccCCC
Confidence 358899999999997654444 33332 45566555432 22 3334 4445555676554322222
Q ss_pred chHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhh-ccCChHHHHHHHHhCCCCCCCCCCchhhhh
Q 038133 366 SIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI-DMGFEPQVVGVLDAMPSSNLKPENEDEELD 444 (671)
Q Consensus 366 ~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~-~~~f~~~i~~il~~l~~~~~~~~~~~~~~~ 444 (671)
..... +.+.+... ....+++|+||.+.++- +...-..+..+...+.+
T Consensus 206 dp~~v-----------------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p------------- 253 (336)
T PRK14974 206 DPAAV-----------------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP------------- 253 (336)
T ss_pred CHHHH-----------------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC-------------
Confidence 21111 11222211 13457899999999874 23334445555444332
Q ss_pred hhhhcceEEEEeccCCHHHHHHHHHhc
Q 038133 445 EKRIYRTTYMFSATMPPAVERLARKYL 471 (671)
Q Consensus 445 ~~~~~~q~i~~SAT~~~~~~~l~~~~l 471 (671)
...++.++||........+..|.
T Consensus 254 ----d~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 254 ----DLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred ----ceEEEeeccccchhHHHHHHHHH
Confidence 34577789988776666666654
No 209
>PRK06526 transposase; Provisional
Probab=96.78 E-value=0.004 Score=63.61 Aligned_cols=29 Identities=17% Similarity=0.128 Sum_probs=21.6
Q ss_pred HhCCCcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 285 GLQQRDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 285 il~~rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
+-.+.+++++||+|+|||..+...+...+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 34667999999999999976655444443
No 210
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.77 E-value=0.08 Score=58.28 Aligned_cols=169 Identities=21% Similarity=0.273 Sum_probs=83.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH-hcCCCCCcccccCCCeEEEEe-cc-hhhHHHHHHHHHHHHhhcCcEEEEEECC
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYI-SRLPPISEENEAEGPYAVVMA-PT-RELAQQIEEETVKFAHYLGIKVVSIVGG 364 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l-~~~~~~~~~~~~~g~~vLil~-Pt-r~La~Qi~~~~~k~~~~~~i~v~~~~gg 364 (671)
++.++++||||+|||.+....+..+. .. .+.++.++. .+ +.-+. +.+..++..+++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~----------~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~~---- 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY----------GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVEV---- 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc----------CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceEc----
Confidence 56789999999999977655444433 21 344444443 22 22121 3344444445544322
Q ss_pred CchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhh
Q 038133 365 QSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEEL 443 (671)
Q Consensus 365 ~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~ 443 (671)
+.++..+...+.. +..+++||||-+-+.-. ......+..++..... +
T Consensus 284 -----------------~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~----~------- 331 (424)
T PRK05703 284 -----------------VYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGE----P------- 331 (424)
T ss_pred -----------------cCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCC----C-------
Confidence 2334444444432 45689999998865311 1112233344441100 0
Q ss_pred hhhhhcceEEEEeccCCH-HHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEec
Q 038133 444 DEKRIYRTTYMFSATMPP-AVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVN 522 (671)
Q Consensus 444 ~~~~~~~q~i~~SAT~~~-~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~ 522 (671)
....+.+|||..+ .+..++..|-.-+. ..-.+..+++...+-.+..++... +-|+..+++
T Consensus 332 -----~~~~LVl~a~~~~~~l~~~~~~f~~~~~-------------~~vI~TKlDet~~~G~i~~~~~~~-~lPv~yit~ 392 (424)
T PRK05703 332 -----IDVYLVLSATTKYEDLKDIYKHFSRLPL-------------DGLIFTKLDETSSLGSILSLLIES-GLPISYLTN 392 (424)
T ss_pred -----CeEEEEEECCCCHHHHHHHHHHhCCCCC-------------CEEEEecccccccccHHHHHHHHH-CCCEEEEeC
Confidence 2446778888765 44455555432110 011223344555555566665553 445555554
Q ss_pred Ch
Q 038133 523 TK 524 (671)
Q Consensus 523 ~~ 524 (671)
..
T Consensus 393 Gq 394 (424)
T PRK05703 393 GQ 394 (424)
T ss_pred CC
Confidence 43
No 211
>PRK08181 transposase; Validated
Probab=96.70 E-value=0.0076 Score=61.96 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=30.0
Q ss_pred HhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 285 GLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 285 il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
+-.+.+++++||+|+|||..+...+...+. .|..++++ +..+|..++
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~-----------~g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIE-----------NGWRVLFT-RTTDLVQKL 149 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHH-----------cCCceeee-eHHHHHHHH
Confidence 346788999999999999765544433332 45555444 455566544
No 212
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.68 E-value=0.00014 Score=82.52 Aligned_cols=78 Identities=21% Similarity=0.430 Sum_probs=65.6
Q ss_pred chhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhc---CCCcEEEeccc
Q 038133 499 SEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT---KRYNVLVATDV 573 (671)
Q Consensus 499 ~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~---g~~~VLVaT~~ 573 (671)
..|+..|...+... .+++|+||..-+...+.+.+++...+ ....+.|..+...|..++..|+. ..+..|++|.+
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 34566666666654 48899999999999999999999988 88999999999999999999984 34678999998
Q ss_pred cccc
Q 038133 574 AGRG 577 (671)
Q Consensus 574 ~~~G 577 (671)
.|.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 8766
No 213
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.65 E-value=0.2 Score=65.15 Aligned_cols=237 Identities=13% Similarity=0.143 Sum_probs=121.9
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~--rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
.+++-|.+|+..++.. +-.++.|+.|+|||.+ +-.++..+. ..|..|++++||-.-|..+.+.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~----------~~G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLAS----------EQGYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHH----------hcCCeEEEEeCCHHHHHHHHHHhcch
Confidence 5889999999999976 4589999999999965 344444443 26889999999998777655432211
Q ss_pred HhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCC
Q 038133 351 AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430 (671)
Q Consensus 351 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~ 430 (671)
+. . .......+..+ .-..|...|. .....+...++||||||-.+.. ..+..++....
T Consensus 498 A~-------T------i~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~ 554 (1960)
T TIGR02760 498 AS-------T------FITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAE 554 (1960)
T ss_pred hh-------h------HHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHh
Confidence 10 0 00000011111 1122222332 1223456789999999996622 34445555443
Q ss_pred CCCCCCCCchhhhhhhhhcceEEEEecc--CCH----HHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHH
Q 038133 431 SSNLKPENEDEELDEKRIYRTTYMFSAT--MPP----AVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSR 504 (671)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~q~i~~SAT--~~~----~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~ 504 (671)
.. ..+++++.-+ +++ .+..++... +-+.+.... .......+ .+.......+...
T Consensus 555 ~~----------------garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~~l~~-i~rq~~~v--~i~~~~~~~r~~~ 614 (1960)
T TIGR02760 555 QH----------------NSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTYAWVD-TKQQKASV--EISEAVDKLRVDY 614 (1960)
T ss_pred hc----------------CCEEEEEcChhhcCccccchHHHHHHHC-CCcEEEeec-ccccCcce--eeeccCchHHHHH
Confidence 32 3445654333 222 233333322 112221111 11111111 1111122233333
Q ss_pred HHHHHHHhC--CCcEEEEecChhhHHHHHHHHHHc----C------CeEEEecC-CCCHHHHHHHHHHhhcCC
Q 038133 505 LQRLLDELG--DKTAIVFVNTKKNADMVAKNLDKL----G------YRVTTLHG-GKSQEQREISLEGFRTKR 564 (671)
Q Consensus 505 L~~ll~~~~--~~~iIVF~~~~~~~~~l~~~L~~~----~------~~v~~lhg-~~~~~~R~~~l~~F~~g~ 564 (671)
+..-..... ...++|+..+......|...++.. | +.+..+.. .++..++... ..|+.|.
T Consensus 615 ia~~y~~L~~~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 615 IASAWLDLTPDRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred HHHHHHhcccccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 333332322 335889998888888877766542 2 23334433 5677776643 5666554
No 214
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.64 E-value=0.0033 Score=63.49 Aligned_cols=87 Identities=23% Similarity=0.276 Sum_probs=67.2
Q ss_pred cCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCC-chHHHHHHHhc-CCeEEEEcchHHHHHHhhcccccCCc
Q 038133 325 AEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQ-SIEEQGFRIRQ-GCEVVIATPGRLIDCLERRYAVLNQC 402 (671)
Q Consensus 325 ~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~-~~~~~~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~ 402 (671)
...|.+|||+.+-.=|..+...+..|. .-+..|+-+..-+ ..+++...+.. .+.|.||||+||..+++...+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 357889999998777776666666652 1124555566655 66777777765 58999999999999999999999999
Q ss_pred cEEEEcccch
Q 038133 403 NYVVLDEADR 412 (671)
Q Consensus 403 ~~vViDEah~ 412 (671)
.+||||=-|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998773
No 215
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.63 E-value=0.017 Score=52.50 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
++.+++.||+|+|||..+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~ 38 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA 38 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56799999999999965433
No 216
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.62 E-value=0.02 Score=59.80 Aligned_cols=66 Identities=21% Similarity=0.147 Sum_probs=52.5
Q ss_pred cCCCCCcHHHHHHHHHHhCCC--cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQR--DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~r--d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
+|.....-.|+-|+..++.-. =+.+.|.-|||||+.++.+.+......+ .-.+++|.=|+..+.+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--------~y~KiiVtRp~vpvG~d 291 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--------RYRKIIVTRPTVPVGED 291 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--------hhceEEEecCCcCcccc
Confidence 577777889999999999764 3788899999999999999988887532 45678888888777643
No 217
>PRK06921 hypothetical protein; Provisional
Probab=96.56 E-value=0.032 Score=57.43 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCChHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll 307 (671)
.+..+++.|++|+|||..+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 356799999999999965443
No 218
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.55 E-value=0.0069 Score=65.44 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHH------hCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 274 PSPIQMAAIPLG------LQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 274 p~~~Q~~ai~~i------l~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
+++-|+.++..+ .++..+++.|+-|+|||..+ -.+..++. ..+..++++|||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~----------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLR----------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhc----------cccceEEEecchHHHHHhc
Confidence 567788888777 57788999999999999753 33333432 2578899999998777654
No 219
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.53 E-value=0.0047 Score=62.86 Aligned_cols=52 Identities=29% Similarity=0.470 Sum_probs=41.8
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhc
Q 038133 244 SKIPRPMRNWAEGKLTPELLRAVER-VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISR 315 (671)
Q Consensus 244 ~~ip~pi~~f~e~~l~~~i~~~i~~-~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~ 315 (671)
..||..+.+|+++++|+-+.+.+.. .|. ++|.||||||||.+ +.+|+.|+..
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 3589999999999999988885532 244 89999999999965 6778888865
No 220
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.45 E-value=0.0091 Score=61.11 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=53.8
Q ss_pred HHHHHhhcCCCcEEEecccccccCCCCC--------CcEEEEcCCCCCHHHHHHHhcccCCCCCc-cEEEEEec
Q 038133 555 ISLEGFRTKRYNVLVATDVAGRGIDIPD--------VAHVINYDMPGNIEMYTHRIGRTGRAGKT-GVATTFLT 619 (671)
Q Consensus 555 ~~l~~F~~g~~~VLVaT~~~~~GiDIp~--------v~~VI~~d~p~s~~~y~QriGR~gR~G~~-g~ai~~~~ 619 (671)
...+.|.+|+.+|+|.|++++.||.+.. -.+.|.+.+|||....+|..||+.|.|+. .-.|.++.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEee
Confidence 4467899999999999999999999863 34567899999999999999999999974 44455443
No 221
>PRK12377 putative replication protein; Provisional
Probab=96.38 E-value=0.033 Score=56.62 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE 344 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~ 344 (671)
..++++.|++|+|||..+...+- .+.. .|..+ +.++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~-~l~~----------~g~~v-~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN-RLLA----------KGRSV-IVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH-HHHH----------cCCCe-EEEEHHHHHHHHH
Confidence 35799999999999976544333 3322 34444 4445556666543
No 222
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.37 E-value=0.041 Score=55.74 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=25.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
..+++.|++|+|||..+...+ .++.. .|..++++ +...|..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia-~~l~~----------~g~~v~~i-t~~~l~~ 140 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAIC-NELLL----------RGKSVLII-TVADIMS 140 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HHHHh----------cCCeEEEE-EHHHHHH
Confidence 469999999999997654433 33332 45666655 4334433
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.36 E-value=0.063 Score=56.96 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=28.5
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
.+.++++.|+||+|||..+...+-..+ . .|..|++ ++...|..++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~-~----------~g~~V~y-~t~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELL-D----------RGKSVIY-RTADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H----------CCCeEEE-EEHHHHHHHH
Confidence 357899999999999976544333333 2 4555555 4445565543
No 224
>PRK06893 DNA replication initiation factor; Validated
Probab=96.35 E-value=0.011 Score=59.45 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=29.3
Q ss_pred cCCccEEEEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHH
Q 038133 399 LNQCNYVVLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPA 462 (671)
Q Consensus 399 l~~~~~vViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 462 (671)
+.++++|||||+|.+.. ..+...+..++..+... ..+++++|++.+|.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~----------------~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ----------------GKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc----------------CCcEEEEeCCCChH
Confidence 45688999999998752 22333455555544221 23466778877665
No 225
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.33 E-value=0.045 Score=51.05 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
++++|++|+|||..+...+.... ..+..++++.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-----------~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-----------TKGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-----------hcCCEEEEEECCcchHH
Confidence 68899999999976544443332 14666777766544443
No 226
>PRK05642 DNA replication initiation factor; Validated
Probab=96.32 E-value=0.012 Score=59.37 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=21.3
Q ss_pred cCCccEEEEcccchhhc-cCChHHHHHHHHhCC
Q 038133 399 LNQCNYVVLDEADRMID-MGFEPQVVGVLDAMP 430 (671)
Q Consensus 399 l~~~~~vViDEah~~~~-~~f~~~i~~il~~l~ 430 (671)
+.++++||||++|.+.. ..+...+..++..+.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~ 127 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLR 127 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHH
Confidence 44678999999997643 233455666766554
No 227
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.30 E-value=0.0044 Score=55.92 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
+..++++||+|+|||......+ ..+.. .+..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~----------~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGP----------PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCC----------CCCCEEEECCEEccc
Confidence 4578999999999997654433 22211 123567777765443
No 228
>PRK08727 hypothetical protein; Validated
Probab=96.30 E-value=0.017 Score=58.30 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
..++++|++|+|||.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3499999999999965443
No 229
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.054 Score=63.05 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
++-+.++||||+|||.++...+..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4568899999999998766555444
No 230
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.27 E-value=0.0097 Score=70.61 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=92.7
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCC-------CcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEE
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPI-------SEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVV 359 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~-------~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~ 359 (671)
.|+++++.-..|+|||..-+...+...-..-+- ...+....+-.|||||. ++..||.+++.+.+... +.+.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 356778888999999987666554432111100 01222334568999997 56678999998877654 6777
Q ss_pred EEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc--------------ccc----cCCcc--EEEEcccchhhccCCh
Q 038133 360 SIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR--------------YAV----LNQCN--YVVLDEADRMIDMGFE 419 (671)
Q Consensus 360 ~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~--------------~~~----l~~~~--~vViDEah~~~~~~f~ 419 (671)
.+.|-....-......-.+|||+||+..|..-+... +.. |-.+. =|++|||+.+-. ..
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 766643322111122346999999999997655321 111 11122 289999996533 33
Q ss_pred HHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHH
Q 038133 420 PQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464 (671)
Q Consensus 420 ~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~ 464 (671)
......+..++. ...-.+|+|+-..+.
T Consensus 529 S~~a~M~~rL~~------------------in~W~VTGTPiq~Id 555 (1394)
T KOG0298|consen 529 SAAAEMVRRLHA------------------INRWCVTGTPIQKID 555 (1394)
T ss_pred HHHHHHHHHhhh------------------hceeeecCCchhhhh
Confidence 444555555554 335567888654433
No 231
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.21 E-value=0.28 Score=55.29 Aligned_cols=144 Identities=21% Similarity=0.219 Sum_probs=91.4
Q ss_pred chhHHHHHHHHHHh---CCCcEEEEecChhhHHHHHHHHHHcCC-------eEEEecCCCCHHHHHHHHHHhh----cCC
Q 038133 499 SEKFSRLQRLLDEL---GDKTAIVFVNTKKNADMVAKNLDKLGY-------RVTTLHGGKSQEQREISLEGFR----TKR 564 (671)
Q Consensus 499 ~~k~~~L~~ll~~~---~~~~iIVF~~~~~~~~~l~~~L~~~~~-------~v~~lhg~~~~~~R~~~l~~F~----~g~ 564 (671)
...+..|-.++... -++.+++|+++.+....+.+.+...|+ +-+.+-...+ -+.+++.|. .|.
T Consensus 611 ~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 611 PEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGR 687 (821)
T ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCC
Confidence 33444555555443 268899999999999999999886643 1222222222 344566664 355
Q ss_pred CcEEEec--ccccccCCCCC--CcEEEEcCCCCC--------------------------------HHHHHHHhcccCCC
Q 038133 565 YNVLVAT--DVAGRGIDIPD--VAHVINYDMPGN--------------------------------IEMYTHRIGRTGRA 608 (671)
Q Consensus 565 ~~VLVaT--~~~~~GiDIp~--v~~VI~~d~p~s--------------------------------~~~y~QriGR~gR~ 608 (671)
--+|+|. .-+++|||+.+ ++.||..++|.. +-...|-||||-|.
T Consensus 688 GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH 767 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH 767 (821)
T ss_pred CeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566655 67899999976 777888887741 11234999999999
Q ss_pred CCccEEEEEecCCCchHHHHHHHHHHhcCCCCChhHHhchhccCCCC
Q 038133 609 GKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 655 (671)
Q Consensus 609 G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~~~~~~~~~g 655 (671)
-++-.++.+++..=. ......+|.|+.+.-.+...-|
T Consensus 768 ~~DYA~i~LlD~RY~----------~p~~RKLp~WI~~~v~s~~~~G 804 (821)
T KOG1133|consen 768 RKDYASIYLLDKRYA----------RPLSRKLPKWIRKRVHSKAGFG 804 (821)
T ss_pred hccceeEEEehhhhc----------CchhhhccHHHHhHhccccCcc
Confidence 888777777653211 1111278888876666655554
No 232
>PHA02533 17 large terminase protein; Provisional
Probab=96.16 E-value=0.042 Score=62.13 Aligned_cols=122 Identities=15% Similarity=0.123 Sum_probs=77.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.|.|+|...+..+..++-.++..+=..|||.+....++.+... ..+..+++++|+..-|..+.+.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~---------~~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF---------NKDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh---------CCCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5778898888877666667888889999998776655544432 2467999999999999998888877665
Q ss_pred hcCc--EEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhh
Q 038133 353 YLGI--KVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI 414 (671)
Q Consensus 353 ~~~i--~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~ 414 (671)
.++- ... +... + .....+.+|+.|.+.|... + ...-.++.++|+||+|.+-
T Consensus 130 ~~P~l~~~~-i~~~-~--~~~I~l~NGS~I~~lss~~--~-----t~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 130 LLPDFLQPG-IVEW-N--KGSIELENGSKIGAYASSP--D-----AVRGNSFAMIYIDECAFIP 182 (534)
T ss_pred hCHHHhhcc-eeec-C--ccEEEeCCCCEEEEEeCCC--C-----ccCCCCCceEEEeccccCC
Confidence 4431 111 1110 0 0111224566775555321 1 1113356789999999763
No 233
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.07 E-value=0.028 Score=60.14 Aligned_cols=91 Identities=23% Similarity=0.440 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCc
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQS 366 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~ 366 (671)
+++.+.++||||.|||.+..-.+..+.+. ......+||...|==.+. .+.++.++.-+++.+..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~--------~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv----- 266 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML--------KKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVV----- 266 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh--------ccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEe-----
Confidence 47889999999999997765555555421 123445566665543332 145677777777666443
Q ss_pred hHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccch
Q 038133 367 IEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412 (671)
Q Consensus 367 ~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~ 412 (671)
-+|.-|...+. .+.+|++|.||=+-+
T Consensus 267 ----------------~~~~el~~ai~----~l~~~d~ILVDTaGr 292 (407)
T COG1419 267 ----------------YSPKELAEAIE----ALRDCDVILVDTAGR 292 (407)
T ss_pred ----------------cCHHHHHHHHH----HhhcCCEEEEeCCCC
Confidence 44544544443 266777888877765
No 234
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.25 Score=54.01 Aligned_cols=174 Identities=15% Similarity=0.132 Sum_probs=86.0
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCc
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQS 366 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~ 366 (671)
.+.-+.++||||+|||......+..++... ....-.++.+.+--++- .+.+..++..+|+.+..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~--------~~~~v~~i~~d~~riga--lEQL~~~a~ilGvp~~~v~~--- 256 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH--------GADKVALLTTDSYRIGG--HEQLRIYGKLLGVSVRSIKD--- 256 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc--------CCCeEEEEecCCcchhH--HHHHHHHHHHcCCceecCCC---
Confidence 456689999999999977654443343321 11223455565533332 23355566666655543222
Q ss_pred hHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhh
Q 038133 367 IEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446 (671)
Q Consensus 367 ~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~ 446 (671)
+..+...+. .+.++++++||.+-+.- ....+..-+..+.... .
T Consensus 257 ------------------~~dl~~al~----~l~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~-~----------- 299 (420)
T PRK14721 257 ------------------IADLQLMLH----ELRGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCG-T----------- 299 (420)
T ss_pred ------------------HHHHHHHHH----HhcCCCEEEecCCCCCc---chHHHHHHHHHHhccC-C-----------
Confidence 222222222 15566777777753221 0111112222221100 0
Q ss_pred hhcceEEEEeccCCHH-HHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChh
Q 038133 447 RIYRTTYMFSATMPPA-VERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKK 525 (671)
Q Consensus 447 ~~~~q~i~~SAT~~~~-~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~ 525 (671)
....++.+|||.... +......|-.-+ ...-.+..+++..+.-.++.++... +-|+..+++...
T Consensus 300 -~~~~~LVl~at~~~~~~~~~~~~f~~~~-------------~~~~I~TKlDEt~~~G~~l~~~~~~-~lPi~yvt~Gq~ 364 (420)
T PRK14721 300 -QVKHLLLLNATSSGDTLDEVISAYQGHG-------------IHGCIITKVDEAASLGIALDAVIRR-KLVLHYVTNGQK 364 (420)
T ss_pred -CceEEEEEcCCCCHHHHHHHHHHhcCCC-------------CCEEEEEeeeCCCCccHHHHHHHHh-CCCEEEEECCCC
Confidence 034567899997554 444555543211 1122334456667777777777664 455555555443
No 235
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.01 E-value=0.031 Score=56.55 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
+..++++||+|+|||....
T Consensus 45 ~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999996544
No 236
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.93 E-value=0.037 Score=60.59 Aligned_cols=147 Identities=11% Similarity=0.170 Sum_probs=86.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchh-hHHHHHHHHHHHHhhcCcEEEEEECCCchH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE-LAQQIEEETVKFAHYLGIKVVSIVGGQSIE 368 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~-La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 368 (671)
-.++.|..|||||.++.+-++..+... ..+..++|+.|+.. |..-++..+......+|+....-......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~--------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~- 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN--------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM- 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc--------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc-
Confidence 478899999999998888887777652 14677999999887 66667777877777777643222221110
Q ss_pred HHHHHHhc-CCeEEEEcc-hHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhh
Q 038133 369 EQGFRIRQ-GCEVVIATP-GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446 (671)
Q Consensus 369 ~~~~~l~~-~~~IiI~Tp-~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~ 446 (671)
...+.. |..|++..- +...+. . ....++++.+|||..+... .+..++..+....
T Consensus 74 --~i~~~~~g~~i~f~g~~d~~~~i-k----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~------------- 129 (396)
T TIGR01547 74 --EIKILNTGKKFIFKGLNDKPNKL-K----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETG------------- 129 (396)
T ss_pred --EEEecCCCeEEEeecccCChhHh-h----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccC-------------
Confidence 001122 556666554 222111 1 2334689999999987332 4444444443211
Q ss_pred hhcceEEEEeccCCHHHHHHHHHhc
Q 038133 447 RIYRTTYMFSATMPPAVERLARKYL 471 (671)
Q Consensus 447 ~~~~q~i~~SAT~~~~~~~l~~~~l 471 (671)
....+++|.|++....-+...|.
T Consensus 130 --~~~~i~~t~NP~~~~~w~~~~f~ 152 (396)
T TIGR01547 130 --GKKFIIFSSNPESPLHWVKKRFI 152 (396)
T ss_pred --CccEEEEEcCcCCCccHHHHHHH
Confidence 11247788887653333344443
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.015 Score=59.33 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=34.6
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
++.++++.|++|+|||..+...+...+ . .|. -++++++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~----------~g~-sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K----------AGI-SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H----------cCC-eEEEEEHHHHHHHHHHHH
Confidence 677999999999999987666555544 2 344 456677778887655433
No 238
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.91 E-value=0.051 Score=60.28 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=50.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCC-eE-EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCC
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP-YA-VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQ 365 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~-~v-Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~ 365 (671)
++-+.++||||+|||.+....+..+... .|. ++ ||-+-+--++ ..+.+..++..+++.+.......
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~----------~G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~~~~~~ 323 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR----------HGASKVALLTTDSYRIG--GHEQLRIYGKILGVPVHAVKDAA 323 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh----------cCCCeEEEEeCCccchh--HHHHHHHHHHHhCCCeeccCCch
Confidence 4568899999999998766555444322 232 33 3333332122 12455666666776665444433
Q ss_pred chHHHHHHHhcCCeEEEEcchHHH
Q 038133 366 SIEEQGFRIRQGCEVVIATPGRLI 389 (671)
Q Consensus 366 ~~~~~~~~l~~~~~IiI~Tp~~L~ 389 (671)
........+...-.++|-|+|+..
T Consensus 324 Dl~~aL~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 324 DLRLALSELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred hHHHHHHhccCCCeEEeCCCCcCh
Confidence 333333344444578899999653
No 239
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.91 E-value=0.027 Score=58.16 Aligned_cols=112 Identities=14% Similarity=0.266 Sum_probs=61.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIE 368 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 368 (671)
.+++++|+||.|||.+. -.+....|...+.....-|.++|-+|...-..-.|..+-. .++..... ..+..
T Consensus 62 p~lLivG~snnGKT~Ii----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~---~lgaP~~~---~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE---ALGAPYRP---RDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHH----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH---HhCcccCC---CCCHH
Confidence 47999999999999853 2233334443333333457778888887766655554433 33322111 11111
Q ss_pred HHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChH--HHHHHHHhC
Q 038133 369 EQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEP--QVVGVLDAM 429 (671)
Q Consensus 369 ~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~--~i~~il~~l 429 (671)
.... ....++. --.+.+|||||.|.++...... .+...+..+
T Consensus 132 ~~~~--------------~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L 175 (302)
T PF05621_consen 132 KLEQ--------------QVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFL 175 (302)
T ss_pred HHHH--------------HHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHH
Confidence 1000 0112222 3457899999999987765443 333445554
No 240
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.81 E-value=0.1 Score=53.95 Aligned_cols=87 Identities=23% Similarity=0.290 Sum_probs=48.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEe-c-chhhHHHHHHHHHHHHhhcCcEEEEEECCCc
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA-P-TRELAQQIEEETVKFAHYLGIKVVSIVGGQS 366 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~-P-tr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~ 366 (671)
+-++++|++|+|||.+..-.+..+. . .|.+++++. . .|.-+. +.+..++...++.+.....+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~-~----------~g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~d 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK-K----------QGKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGAD 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH-h----------cCCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCC
Confidence 3578889999999987666554432 2 456666554 3 344333 3444455556655543332322
Q ss_pred hHHHH-----HHHhcCCe-EEEEcchHHH
Q 038133 367 IEEQG-----FRIRQGCE-VVIATPGRLI 389 (671)
Q Consensus 367 ~~~~~-----~~l~~~~~-IiI~Tp~~L~ 389 (671)
..... .....+++ |+|=|||++.
T Consensus 139 p~~~~~~~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 139 PAAVAFDAIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCCc
Confidence 22211 11234566 7888988873
No 241
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.78 E-value=0.03 Score=66.15 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
..++|-|++|+.. ....++|.|..|||||.+.+.-+...+... ......+|+|+.|+..|..+.+.+.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-------~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-------NASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-------CCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4588899988864 345799999999999988655554444321 123457999999999999877766665
No 242
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.78 E-value=0.067 Score=51.59 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=33.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
+++.||+|+|||...+-.+...+. .|..++|+.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999876665555542 5777887764 45566665555443
No 243
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.66 E-value=0.34 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
++.++++||+|+|||......+..+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5568999999999997765555433
No 244
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.66 E-value=0.011 Score=60.24 Aligned_cols=120 Identities=15% Similarity=0.191 Sum_probs=59.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH--HHHHHHHHHHhh-cCc----EEEEEEC
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ--QIEEETVKFAHY-LGI----KVVSIVG 363 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~--Qi~~~~~k~~~~-~~i----~v~~~~g 363 (671)
.+|.||||+||+- ++.-++..-+ +. .....|++|+|+....- .+..|-..+++. +.. .++-.+|
T Consensus 90 ~~VYGPTG~GKSq-LlRNLis~~l----I~----P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~ 160 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-LLRNLISCQL----IQ----PPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTG 160 (369)
T ss_pred EEEECCCCCCHHH-HHHHhhhcCc----cc----CCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccc
Confidence 6778999999994 3444433211 11 13456899999886552 222232333221 111 1222222
Q ss_pred CCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccc---------cCCccEEEEcccchhhccCChHHHHHHHHhCCCC
Q 038133 364 GQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAV---------LNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432 (671)
Q Consensus 364 g~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~---------l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~ 432 (671)
.. ..+.|-+|++-+..--+-+... -..-=.||+||| |-+.+-...+..++.++|++
T Consensus 161 t~-----------~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDEC--Me~Lg~~~~is~fFHAlPSK 225 (369)
T PF02456_consen 161 TF-----------RPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDEC--MEKLGSHKSISKFFHALPSK 225 (369)
T ss_pred cc-----------cccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHH--HHHhcCCCChhHHHhcCcHH
Confidence 11 1345555544432111100000 111237999998 55666666777777777753
No 245
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.65 E-value=0.034 Score=65.74 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=51.6
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
..++|-|++|+... ...++|.|..|||||.+.+.-+...+.. ..-....+|+|+-|+..|..+.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~-------~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQV-------ENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHc-------CCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35889999888643 4579999999999998765555444421 11234579999999999998777766653
No 246
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.64 E-value=0.82 Score=47.10 Aligned_cols=169 Identities=11% Similarity=0.173 Sum_probs=87.0
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec-ch--hhHHHHHHHHHHHHhhcCcEEEEEEC
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP-TR--ELAQQIEEETVKFAHYLGIKVVSIVG 363 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P-tr--~La~Qi~~~~~k~~~~~~i~v~~~~g 363 (671)
.+..+.++|++|+|||..+...+..+.. .+..+.++.- +. ..+.| +..++...++.+...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~-----------~~~~v~~i~~D~~ri~~~~q----l~~~~~~~~~~~~~~-- 136 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG-----------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVIAV-- 136 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH-----------cCCeEEEEecCCCCHHHHHH----HHHHhhhcCceEEec--
Confidence 3456899999999999876655444321 3444544443 32 23444 334444444333221
Q ss_pred CCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhh
Q 038133 364 GQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEE 442 (671)
Q Consensus 364 g~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~ 442 (671)
.++..+.+.+..- .....+++||||-+=++.. ...-..+..++....+
T Consensus 137 -------------------~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~----------- 185 (270)
T PRK06731 137 -------------------RDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEP----------- 185 (270)
T ss_pred -------------------CCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCC-----------
Confidence 2344444444321 1134688999999876521 1111222233322211
Q ss_pred hhhhhhcceEEEEeccCCH-HHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEe
Q 038133 443 LDEKRIYRTTYMFSATMPP-AVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFV 521 (671)
Q Consensus 443 ~~~~~~~~q~i~~SAT~~~-~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~ 521 (671)
....+.+|||... .....++.|-.-+ .-.-.+..+++..+.-.+..+.... +-|+..++
T Consensus 186 ------~~~~LVl~a~~~~~d~~~~~~~f~~~~-------------~~~~I~TKlDet~~~G~~l~~~~~~-~~Pi~~it 245 (270)
T PRK06731 186 ------DYICLTLSASMKSKDMIEIITNFKDIH-------------IDGIVFTKFDETASSGELLKIPAVS-SAPIVLMT 245 (270)
T ss_pred ------CeEEEEEcCccCHHHHHHHHHHhCCCC-------------CCEEEEEeecCCCCccHHHHHHHHH-CcCEEEEe
Confidence 2346678998754 6667777663211 1111334456666666677776664 45665555
Q ss_pred cC
Q 038133 522 NT 523 (671)
Q Consensus 522 ~~ 523 (671)
+.
T Consensus 246 ~G 247 (270)
T PRK06731 246 DG 247 (270)
T ss_pred CC
Confidence 43
No 247
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.64 E-value=0.069 Score=59.13 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=23.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
..+++.||+|+|||.... ++...+.. .+..++++..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~----------~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE----------SGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH----------cCCCEEEeeH
Confidence 358999999999996543 34444432 3566766653
No 248
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.61 E-value=0.065 Score=53.49 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCChHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll 307 (671)
.+..+++.||+|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 345799999999999976544
No 249
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.59 E-value=0.075 Score=59.20 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
..+++.||+|+|||.....
T Consensus 149 ~~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4589999999999965433
No 250
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=95.48 E-value=0.03 Score=56.58 Aligned_cols=107 Identities=14% Similarity=0.254 Sum_probs=78.1
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhhcCC----CcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcc--cCCCCCc
Q 038133 538 GYRVTTLHGGKSQEQREISLEGFRTKR----YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGR--TGRAGKT 611 (671)
Q Consensus 538 ~~~v~~lhg~~~~~~R~~~l~~F~~g~----~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR--~gR~G~~ 611 (671)
++.+.+++|+.+.+. -.|.++. ..|+|+=+.++||+.+++..+......+...+++.|| || .-|.|-.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCcccc
Confidence 577788887665433 2344443 7799999999999999999999999999999999999 88 5588878
Q ss_pred cEEEEEecCCCchHHHHHHHHHHhcCCCCChhHHhchhccCCC
Q 038133 612 GVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKP 654 (671)
Q Consensus 612 g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~~~~~~~~~ 654 (671)
+.|-++++++-...|..+.+. ...+-++|..+......|
T Consensus 184 dl~Ri~~~~~l~~~f~~i~~~----~e~lr~~i~~~~~~~~tp 222 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIAEA----EEELREEIKEMANNGLTP 222 (239)
T ss_pred cceEEecCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH
Confidence 899999987766666665544 344455555554444444
No 251
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.46 E-value=0.063 Score=63.00 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 274 p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
++|-|.+++.. ...+++|.|..|||||.+.+.-+...+... ......+|+|+.|+..|.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~-------~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNC-------GYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-------CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67888888764 346899999999999987666555555321 1134679999999999998877776643
No 252
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.44 E-value=0.053 Score=60.90 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhC-----C----CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHH
Q 038133 276 PIQMAAIPLGLQ-----Q----RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEE 346 (671)
Q Consensus 276 ~~Q~~ai~~il~-----~----rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~ 346 (671)
|+|..++-.++. | +.+++.-+=|.|||......++..+.- ....++.++++++++.-|..++..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~-------~g~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL-------DGEPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc-------CCccCceEEEEeCCHHHHHHHHHH
Confidence 567766666651 2 357888899999996555444444432 123578999999999999999999
Q ss_pred HHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcc--cccCCccEEEEcccchhhcc
Q 038133 347 TVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY--AVLNQCNYVVLDEADRMIDM 416 (671)
Q Consensus 347 ~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~--~~l~~~~~vViDEah~~~~~ 416 (671)
+..+....+.-.... +. .... .....|.....+.++..+.+.. ..-.+.+++|+||+|.+-+.
T Consensus 74 ~~~~i~~~~~l~~~~-~~-----~~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~ 138 (477)
T PF03354_consen 74 AKKMIEASPELRKRK-KP-----KIIK-SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD 138 (477)
T ss_pred HHHHHHhChhhccch-hh-----hhhh-hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH
Confidence 988876532111000 00 0000 0112333333233333332221 12335789999999988653
No 253
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.44 E-value=0.0066 Score=58.06 Aligned_cols=102 Identities=24% Similarity=0.166 Sum_probs=41.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHH
Q 038133 292 IGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQG 371 (671)
Q Consensus 292 ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~ 371 (671)
++.|+-|-|||.+.-+.+...+. .....++|.+|+.+-++.+++.+..-+..++++......... ..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~----------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~---~~ 67 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ----------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQ---II 67 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH----------hcCceEEEecCCHHHHHHHHHHHHhhcccccccccccccccc---cc
Confidence 57899999999765554433221 122579999999999987776665555544443300000000 00
Q ss_pred HHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchh
Q 038133 372 FRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRM 413 (671)
Q Consensus 372 ~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~ 413 (671)
.....+..|-+..|+.+... ...+++||||||=.+
T Consensus 68 ~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI 102 (177)
T PF05127_consen 68 KLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI 102 (177)
T ss_dssp -----CCC--B--HHHHCCT-----------SCEEECTGGGS
T ss_pred ccccccceEEEECCHHHHhC-------cCCCCEEEEechhcC
Confidence 00112456666777665322 224689999999865
No 254
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.43 E-value=0.054 Score=63.17 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=54.6
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHH
Q 038133 265 AVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE 344 (671)
Q Consensus 265 ~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~ 344 (671)
.+..+--..+++-|+.|+-.. ..+++|.|..|||||.+.+.-+...+.. ....+..+|+++.|+..|..+.
T Consensus 188 ~f~~~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~-------~~~~~~~IL~ltft~~AA~em~ 258 (684)
T PRK11054 188 FFSQVESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLAR-------GQAQPEQILLLAFGRQAAEEMD 258 (684)
T ss_pred HHHhccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHh-------CCCCHHHeEEEeccHHHHHHHH
Confidence 333444457999999988643 3568999999999998765554433322 1124568999999999999877
Q ss_pred HHHHHHH
Q 038133 345 EETVKFA 351 (671)
Q Consensus 345 ~~~~k~~ 351 (671)
+.+....
T Consensus 259 eRL~~~l 265 (684)
T PRK11054 259 ERIRERL 265 (684)
T ss_pred HHHHHhc
Confidence 7666543
No 255
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.42 E-value=0.051 Score=56.51 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
++.++++||||+|||......+..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999997665444333
No 256
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.76 Score=50.07 Aligned_cols=168 Identities=14% Similarity=0.184 Sum_probs=83.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEe-cc-hhhHHHHHHHHHHHHhhcCcEEEEEECCCc
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA-PT-RELAQQIEEETVKFAHYLGIKVVSIVGGQS 366 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~-Pt-r~La~Qi~~~~~k~~~~~~i~v~~~~gg~~ 366 (671)
.-++++||+|+|||.+....+..+... .|..++++. .+ |..+. ..+..++...++.+...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~----------~G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~~----- 285 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH----------MGKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYPV----- 285 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh----------cCCeEEEecccchhhhHH---HHHHHHHHhcCCCeeeh-----
Confidence 347899999999998776665544322 344444333 33 33333 24455555555433211
Q ss_pred hHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhh-ccCChHHHHHHHHhCCCCCCCCCCchhhhhh
Q 038133 367 IEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI-DMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445 (671)
Q Consensus 367 ~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~-~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~ 445 (671)
..+..+...+. -..+++||||=+-++. +......+..++....... +
T Consensus 286 ----------------~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~--~--------- 333 (432)
T PRK12724 286 ----------------KDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKD--S--------- 333 (432)
T ss_pred ----------------HHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCC--C---------
Confidence 01122222222 2467888888665541 1212223333333331110 0
Q ss_pred hhhcceEEEEeccCCH-HHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecC
Q 038133 446 KRIYRTTYMFSATMPP-AVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNT 523 (671)
Q Consensus 446 ~~~~~q~i~~SAT~~~-~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~ 523 (671)
...++.+|||... .+...+..|-.-+ .-.-.+..+++..+.-.++.++... +-|+..+++.
T Consensus 334 ---~e~~LVLsAt~~~~~~~~~~~~f~~~~-------------~~glIlTKLDEt~~~G~il~i~~~~-~lPI~ylt~G 395 (432)
T PRK12724 334 ---VENLLVLSSTSSYHHTLTVLKAYESLN-------------YRRILLTKLDEADFLGSFLELADTY-SKSFTYLSVG 395 (432)
T ss_pred ---CeEEEEEeCCCCHHHHHHHHHHhcCCC-------------CCEEEEEcccCCCCccHHHHHHHHH-CCCEEEEecC
Confidence 2456788999877 5555555552111 1111233445666666677776653 4555555544
No 257
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.35 E-value=0.097 Score=65.54 Aligned_cols=62 Identities=26% Similarity=0.344 Sum_probs=46.2
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCChHHHHH--HHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 273 NPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAF--VLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~--rd~ii~a~TGsGKT~~~--ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
.+++-|.+|+..++.+ +-+++.|..|+|||.+. ++.++..+.. ..+..++.++||-.-|..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e---------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE---------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh---------ccCceEEEEechHHHHHHH
Confidence 6899999999999965 66899999999999763 2222222211 2467799999998887754
No 258
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.35 E-value=0.083 Score=56.14 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=16.5
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
++|+.||.|+|||..+-+.+
T Consensus 50 SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred eeEEECCCCCCHHHHHHHHH
Confidence 69999999999998765543
No 259
>PRK08116 hypothetical protein; Validated
Probab=95.34 E-value=0.16 Score=52.38 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=26.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
..+++.|++|+|||..+.. +...+.. .+..+++ ++..+|...+
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~----------~~~~v~~-~~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIE----------KGVPVIF-VNFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHH----------cCCeEEE-EEHHHHHHHH
Confidence 4599999999999976544 4444432 3444544 4445555533
No 260
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.33 E-value=0.058 Score=59.00 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=27.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll 307 (671)
.+-......+..+..++++++.|++|+|||..+-.
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 34455566777778899999999999999977643
No 261
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.21 E-value=0.09 Score=52.69 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
++.++++||+|+|||..+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45799999999999965433
No 262
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.18 E-value=0.3 Score=55.75 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=45.9
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcC
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLG 355 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~ 355 (671)
..+-.++.+|-|-|||.+..+.+..++.. .|..|+|.+|...-+++++..+..++..++
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f----------~Gi~IlvTAH~~~ts~evF~rv~~~le~lg 244 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISF----------LEIDIVVQAQRKTMCLTLYNRVETVVHAYQ 244 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHh----------cCCeEEEECCChhhHHHHHHHHHHHHHHhc
Confidence 44568888999999998766555544421 467899999999999999998888887543
No 263
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.17 E-value=0.086 Score=58.56 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=27.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~ 345 (671)
..+++.|++|+|||... ..+...+... ..+..++++.+ ..+...+..
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~--------~~~~~v~yv~~-~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN--------FSDLKVSYMSG-DEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh--------CCCCeEEEEEH-HHHHHHHHH
Confidence 35899999999999543 4444444321 23556665544 455554433
No 264
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.16 E-value=0.28 Score=55.80 Aligned_cols=109 Identities=21% Similarity=0.196 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCc-E-EEEEECCC
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGI-K-VVSIVGGQ 365 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i-~-v~~~~gg~ 365 (671)
.+-.+++.|--.|||.+.. +++..+.. ...|-.+++.+|.+..++.+++++..++..+.. . +..+.| .
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~--------s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e 323 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALA--------TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E 323 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHH--------hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c
Confidence 3467888899999998655 55554432 125889999999999999999999988775421 1 212222 1
Q ss_pred chHHHHHHHhcCC--eEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc
Q 038133 366 SIEEQGFRIRQGC--EVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 366 ~~~~~~~~l~~~~--~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~ 415 (671)
.. ...+.+|+ .|.++|- -+.+..--..++++|||||+.+-+
T Consensus 324 ~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 324 TI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred EE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH
Confidence 11 11222332 5555532 112223345789999999998755
No 265
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.11 E-value=0.49 Score=54.84 Aligned_cols=178 Identities=22% Similarity=0.265 Sum_probs=98.7
Q ss_pred ccCCCChhhhhccCHHHHHHHHhhcC-----cccccCC---C---C----CCCCCcccCCCCHHHHHHHHHcCCCCCcHH
Q 038133 213 VDRHWSEKKLEEMTERDWRIFREDFN-----ISYKGSK---I---P----RPMRNWAEGKLTPELLRAVERVGYKNPSPI 277 (671)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~f~~~~~-----i~~~g~~---i---p----~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~ 277 (671)
..+.|+.....+.+.+-.+.|...+. +.+.+.. + | .|.+.-.+...++..-..+.......+..-
T Consensus 139 ~~~~~~~~~~~~vt~rf~~rf~r~l~~~~~~i~i~d~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~l~~T~dQ~~ 218 (758)
T COG1444 139 DSRRLSVPPFPDVTPRFNRRFIRSLSAHPDGIFIDDVDPKKIESGPVSANEPSKERKKPPLDPVFPRELYELCLTEDQAE 218 (758)
T ss_pred hhhcccCCCCcccchHHHHHHHHHHhcCCCceEEEcccccccccCCcccccccccccCCCCCCCCCHHHhhhhcChhHHH
Confidence 34556666666777776666554432 1111111 0 1 111111122233333334555555555555
Q ss_pred HHHHHHHHhCC--CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcC
Q 038133 278 QMAAIPLGLQQ--RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLG 355 (671)
Q Consensus 278 Q~~ai~~il~~--rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~ 355 (671)
|.+.+..++.+ +-+++.|+-|=|||.+.-+.+...... .....++|.+|+.+-++.+.+-+.+-+..+|
T Consensus 219 ~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~---------~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg 289 (758)
T COG1444 219 ALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL---------AGSVRIIVTAPTPANVQTLFEFAGKGLEFLG 289 (758)
T ss_pred HHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh---------cCCceEEEeCCCHHHHHHHHHHHHHhHHHhC
Confidence 55566666654 358889999999998877666332221 1145899999999999988888777777777
Q ss_pred cEEEEEEC--CCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchh
Q 038133 356 IKVVSIVG--GQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRM 413 (671)
Q Consensus 356 i~v~~~~g--g~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~ 413 (671)
++-..... |...... .....|=+-+|.... ...++||||||=-+
T Consensus 290 ~~~~v~~d~~g~~~~~~----~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI 335 (758)
T COG1444 290 YKRKVAPDALGEIREVS----GDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI 335 (758)
T ss_pred Cccccccccccceeeec----CCceeEEeeCcchhc----------ccCCEEEEehhhcC
Confidence 54322211 1111100 012335555665532 12789999999865
No 266
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.11 E-value=0.22 Score=54.81 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l 310 (671)
..++++|++|+|||.+..-.+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999987655543
No 267
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.09 E-value=0.098 Score=57.46 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=17.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHh
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYIS 314 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~ 314 (671)
.+++.|++|+|||... ..+...+.
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~ 161 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEIL 161 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHH
Confidence 5899999999999754 33444443
No 268
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.08 E-value=0.49 Score=44.56 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=72.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCC-----
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQ----- 365 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~----- 365 (671)
+.+-.++|.|||.+++--++..+. .|.+++++.=.+.-.. +.+..-+...-++.+...-.+.
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~-----------~g~~v~~vQFlKg~~~--~gE~~~l~~l~~v~~~~~g~~~~~~~~ 71 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALG-----------HGYRVGVVQFLKGGWK--YGELKALERLPNIEIHRMGRGFFWTTE 71 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----------CCCeEEEEEEeCCCCc--cCHHHHHHhCCCcEEEECCCCCccCCC
Confidence 556678899999998888877764 6888888543332110 1122211111133333221111
Q ss_pred chHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCCh--HHHHHHHHhCCCCCCCCCCchhhh
Q 038133 366 SIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFE--PQVVGVLDAMPSSNLKPENEDEEL 443 (671)
Q Consensus 366 ~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~--~~i~~il~~l~~~~~~~~~~~~~~ 443 (671)
...+.... ....+.... ..+....+++||+||+=..+..++. ..+..++..-|.
T Consensus 72 ~~~~~~~~-----------a~~~~~~a~-~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~------------ 127 (159)
T cd00561 72 NDEEDIAA-----------AAEGWAFAK-EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE------------ 127 (159)
T ss_pred ChHHHHHH-----------HHHHHHHHH-HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC------------
Confidence 11110000 011122221 1223568999999999988777753 455566665544
Q ss_pred hhhhhcceEEEEeccCCHHHHHHHH
Q 038133 444 DEKRIYRTTYMFSATMPPAVERLAR 468 (671)
Q Consensus 444 ~~~~~~~q~i~~SAT~~~~~~~l~~ 468 (671)
...+|+.+-.+|+.+..++.
T Consensus 128 -----~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 128 -----DLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred -----CCEEEEECCCCCHHHHHhCc
Confidence 35577777777777665543
No 269
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.06 E-value=0.14 Score=49.49 Aligned_cols=145 Identities=20% Similarity=0.172 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCc
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQS 366 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~ 366 (671)
....+++..++|.|||.+++--++..+. .|.+|+|+-=.+--.. +.+...+....++.......+..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g-----------~G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~g~~~~ 87 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG-----------HGKKVGVVQFIKGAWS--TGERNLLEFGGGVEFHVMGTGFT 87 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH-----------CCCeEEEEEEecCCCc--cCHHHHHhcCCCcEEEECCCCCc
Confidence 4567999999999999998888888774 6888888865443211 11222222111333332211111
Q ss_pred hHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCCh--HHHHHHHHhCCCCCCCCCCchhhhh
Q 038133 367 IEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFE--PQVVGVLDAMPSSNLKPENEDEELD 444 (671)
Q Consensus 367 ~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~--~~i~~il~~l~~~~~~~~~~~~~~~ 444 (671)
... ...+--+......+..... .+.-..+++||+||+-..++.++. ..+..++..-|.
T Consensus 88 ~~~------~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~------------- 147 (191)
T PRK05986 88 WET------QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPG------------- 147 (191)
T ss_pred ccC------CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCC-------------
Confidence 000 0000000011111222211 222467999999999998888754 455566665444
Q ss_pred hhhhcceEEEEeccCCHHHHHHHH
Q 038133 445 EKRIYRTTYMFSATMPPAVERLAR 468 (671)
Q Consensus 445 ~~~~~~q~i~~SAT~~~~~~~l~~ 468 (671)
...+|+.--.+|+.+..++.
T Consensus 148 ----~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 148 ----MQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred ----CCEEEEECCCCCHHHHHhCc
Confidence 34566666666766665543
No 270
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.06 E-value=0.22 Score=54.76 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.1
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.+++.||+|+|||..+-.
T Consensus 38 ~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILWGPPGTGKTTLARI 55 (413)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999976543
No 271
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.04 E-value=0.089 Score=55.51 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 274 PSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 274 p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
+++.|...+..+. .+.+++++|+||||||. ++-.++..+...+ .+.+++++=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~--------~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASA--------PEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCC--------CCceEEEecCCcccc
Confidence 5677777766555 56789999999999995 4455666553211 244677777777763
No 272
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.98 E-value=0.13 Score=60.38 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=65.6
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-ccccCCCCCCcEEE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-AGRGIDIPDVAHVI 587 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~~~GiDIp~v~~VI 587 (671)
.+.+++|.+++..-|...++.+... ++.+..+||+++..++..++..+.+|..+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 3678999999999888887776654 789999999999999999999999999999999974 55667888999888
Q ss_pred E
Q 038133 588 N 588 (671)
Q Consensus 588 ~ 588 (671)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 273
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.97 E-value=0.18 Score=64.05 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 273 NPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~--rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
.+++.|.+|+..++.+ +-+++.|..|+|||.+. -.++..+...+ ...+..++.++||---|..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~------~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP------ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh------cccCceEEEECCcHHHHHHH
Confidence 6899999999999975 56899999999999653 33333332110 12467799999998877644
No 274
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.96 E-value=0.066 Score=57.68 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHh
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYIS 314 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~ 314 (671)
+..++++||||||||.. +..++.++.
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 34589999999999954 566667664
No 275
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.94 E-value=0.046 Score=54.08 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.2
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
++|+.||.|+|||..+-+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 599999999999976544
No 276
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.93 E-value=0.2 Score=55.47 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFV 306 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~l 306 (671)
.+++.||+|+|||..+.
T Consensus 132 ~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred eEEEEcCCCCcHHHHHH
Confidence 59999999999996543
No 277
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.84 E-value=0.3 Score=50.13 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHHh----CC-CcEEEEcCCCChHHHHHH
Q 038133 273 NPSPIQMAAIPLGL----QQ-RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~~-rd~ii~a~TGsGKT~~~l 306 (671)
.+++.+.+++..+. .+ ..++++||+|+|||..+-
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45555566665543 22 358899999999997644
No 278
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.83 E-value=0.1 Score=59.33 Aligned_cols=32 Identities=6% Similarity=0.219 Sum_probs=21.2
Q ss_pred cCCccEEEEcccchhhccC-ChHHHHHHHHhCC
Q 038133 399 LNQCNYVVLDEADRMIDMG-FEPQVVGVLDAMP 430 (671)
Q Consensus 399 l~~~~~vViDEah~~~~~~-f~~~i~~il~~l~ 430 (671)
+.++++||||++|.+.... ....+..++..+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~ 407 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH 407 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH
Confidence 4568999999999875432 2344556666553
No 279
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.82 E-value=0.1 Score=55.08 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=43.3
Q ss_pred HHHHHcCCCCCcHHHHHHHHHH-hCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 264 RAVERVGYKNPSPIQMAAIPLG-LQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 264 ~~i~~~g~~~p~~~Q~~ai~~i-l~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
+.+...|+ +++.|...+..+ ..+++++++|+|||||| .++..++..+... ....+++++-.+.+|.
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~--------~~~~rivtIEd~~El~ 191 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQ--------DPTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhc--------CCCceEEEEcCCCccc
Confidence 33434454 567777777654 46788999999999999 4455555554221 1345678878887773
No 280
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.81 E-value=0.12 Score=46.38 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=13.9
Q ss_pred CccEEEEcccchhhccC
Q 038133 401 QCNYVVLDEADRMIDMG 417 (671)
Q Consensus 401 ~~~~vViDEah~~~~~~ 417 (671)
...+|+|||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 35899999999987654
No 281
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.17 Score=48.73 Aligned_cols=102 Identities=23% Similarity=0.190 Sum_probs=61.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHH
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQ 370 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 370 (671)
.+++||++||||...+..+..+.. .|.++++..|-.. . .++...+.-.-|.+.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~-----------~g~~v~vfkp~iD----------~---R~~~~~V~Sr~G~~~--- 59 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE-----------AGMKVLVFKPAID----------T---RYGVGKVSSRIGLSS--- 59 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH-----------cCCeEEEEecccc----------c---ccccceeeeccCCcc---
Confidence 688999999999876666655543 5888999988421 1 122333333333321
Q ss_pred HHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHh
Q 038133 371 GFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 428 (671)
Q Consensus 371 ~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~ 428 (671)
.-++|-++..+.+.+........ ++.|.||||+-+ +...-.++..+.+.
T Consensus 60 -------~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad~ 108 (201)
T COG1435 60 -------EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELADR 108 (201)
T ss_pred -------cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHhh
Confidence 23566677777777765433222 889999999964 32333344444443
No 282
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.75 E-value=0.058 Score=52.02 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=28.1
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
.+.++++.|++|+|||..+...+-..+. .|..+++ +++.+|...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-----------~g~~v~f-~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-----------KGYSVLF-ITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-----------TT--EEE-EEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-----------CCcceeE-eecCceecc
Confidence 5678999999999999876665555442 4555655 455566654
No 283
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.75 E-value=0.21 Score=52.79 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=18.3
Q ss_pred CCccEEEEcccchhhccCChHHHHHHHHhC
Q 038133 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429 (671)
Q Consensus 400 ~~~~~vViDEah~~~~~~f~~~i~~il~~l 429 (671)
...++|||||+|.+........+..++...
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~ 128 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAY 128 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhc
Confidence 346799999999883322333444445543
No 284
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.73 E-value=0.29 Score=52.00 Aligned_cols=41 Identities=15% Similarity=-0.014 Sum_probs=30.3
Q ss_pred CCcHHHHHHHHHHhCCC----cEEEEcCCCChHHHHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQR----DVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~r----d~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
..+|+|...+..++... .+++.||.|.|||..+...+-..+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 45788999998887542 488999999999976655444433
No 285
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.71 E-value=0.16 Score=60.37 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=18.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
-+|+.||.|+|||.++.+.+-.+
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999998876655443
No 286
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.66 E-value=0.078 Score=56.98 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHh
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYIS 314 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~ 314 (671)
.+.-++++||||||||.. +..++.++.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 344699999999999964 455666654
No 287
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.65 E-value=0.11 Score=57.45 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=16.4
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|++||.|+|||.++.+.+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999998765544
No 288
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.64 E-value=0.054 Score=56.61 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=47.5
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhCCC-cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 264 RAVERVGYKNPSPIQMAAIPLGLQQR-DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 264 ~~i~~~g~~~p~~~Q~~ai~~il~~r-d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
....-+.|...++-|...+-.+...+ +++++|.||||||.. +-.++.++ ...-+++++=-|.||-.
T Consensus 148 tl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i-----------~~~eRvItiEDtaELql 214 (355)
T COG4962 148 TLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFI-----------DSDERVITIEDTAELQL 214 (355)
T ss_pred cHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcC-----------CCcccEEEEeehhhhcc
Confidence 33344567889999999988888766 999999999999963 23333333 13348899888887754
No 289
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.64 E-value=0.079 Score=62.01 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=51.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
.+++-|.+|+... ...++|.|..|||||.+.+.-+...+... ......+|+|+.|+..|..+.+.+..+.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-------~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGC-------GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhc-------CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4678888888653 45789999999999988666555545321 1234579999999999998877776653
No 290
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.64 E-value=0.15 Score=56.83 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=19.4
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
.|+.++++||||+|||..+...+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999999997765444433
No 291
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.60 E-value=0.19 Score=65.33 Aligned_cols=62 Identities=27% Similarity=0.267 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHhCC--CcEEEEcCCCChHHHHHH---HHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAFV---LPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~--rd~ii~a~TGsGKT~~~l---l~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
..+++.|.+|+..++.+ +-+++.|..|+|||.... -++...+. ..+..++.++||-.-|.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~----------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE----------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH----------hcCCeEEEEeChHHHHHHH
Confidence 36899999999999876 447888999999996541 22323222 2577899999998777654
No 292
>PRK10867 signal recognition particle protein; Provisional
Probab=94.57 E-value=0.75 Score=50.61 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=33.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEE-ec-chhhHHHHHHHHHHHHhhcCcEEEEE
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVM-AP-TRELAQQIEEETVKFAHYLGIKVVSI 361 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil-~P-tr~La~Qi~~~~~k~~~~~~i~v~~~ 361 (671)
-++++|++|+|||.+..-.+..+.. ..|.+++++ +. .|.-|. +.+..++...++.+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~----------~~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKK----------KKKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH----------hcCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEec
Confidence 4889999999999876655544332 125555444 43 333332 23444555567665543
No 293
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.57 E-value=0.22 Score=47.54 Aligned_cols=140 Identities=21% Similarity=0.200 Sum_probs=73.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHH
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQ 370 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 370 (671)
+.+..++|.|||.+++-.++..+. .|.+|+|+.=.+.-. .+.+..-+ ..+++.+.....+.....
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~-----------~g~~v~ivQFlKg~~--~~GE~~~l-~~~~~~~~~~g~g~~~~~- 72 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALG-----------HGKKVGVIQFIKGAW--PNGERAAF-EPHGVEFQVMGTGFTWET- 72 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHH-----------CCCeEEEEEEecCCc--ccChHHHH-HhcCcEEEECCCCCeecC-
Confidence 677788999999998888877764 688887774333210 01111111 112444433222211000
Q ss_pred HHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCCh--HHHHHHHHhCCCCCCCCCCchhhhhhhhh
Q 038133 371 GFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFE--PQVVGVLDAMPSSNLKPENEDEELDEKRI 448 (671)
Q Consensus 371 ~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~--~~i~~il~~l~~~~~~~~~~~~~~~~~~~ 448 (671)
....--.......++.... .+.-..+++||+||+-..++.++- ..+..++..-|.
T Consensus 73 -----~~~~~~~~~~~~~~~~a~~-~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~----------------- 129 (173)
T TIGR00708 73 -----QNREADTAIAKAAWQHAKE-MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPG----------------- 129 (173)
T ss_pred -----CCcHHHHHHHHHHHHHHHH-HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCC-----------------
Confidence 0000000001112222211 122467999999999988887744 355566655544
Q ss_pred cceEEEEeccCCHHHHHHHH
Q 038133 449 YRTTYMFSATMPPAVERLAR 468 (671)
Q Consensus 449 ~~q~i~~SAT~~~~~~~l~~ 468 (671)
...+|+..-.+|+.+..++.
T Consensus 130 ~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 130 HQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCEEEEECCCCCHHHHHhCc
Confidence 34566666667776665543
No 294
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.56 E-value=0.1 Score=53.78 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
.|.-+++.|++|+|||...+..+...+.. .|..++|+.- -.-..++...+..
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----------~g~~vl~iS~-E~~~~~~~~r~~~ 80 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQ----------HGVRVGTISL-EEPVVRTARRLLG 80 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHh----------cCceEEEEEc-ccCHHHHHHHHHH
Confidence 45568999999999997655555444321 3667777763 2233444444433
No 295
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.53 E-value=0.29 Score=57.56 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc----
Q 038133 462 AVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL---- 537 (671)
Q Consensus 462 ~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~---- 537 (671)
.-..+++.+++...+..+.+.+... ..+-.+..+.-...+.++++.++|.--+..+++.|...
T Consensus 86 ~QR~WakR~~rg~SFaiiAPTGvGK-------------TTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 86 AQRVWAKRLVRGKSFAIIAPTGVGK-------------TTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred HHHHHHHHHHcCCceEEEcCCCCch-------------hHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 3355667777666555444433221 22444555555556789999999999888888888766
Q ss_pred C-CeEEE-ecCCCCHHHHHHHHHHhhcCCCcEEEecccc-cccCCC-C--CCcEEEEcC
Q 038133 538 G-YRVTT-LHGGKSQEQREISLEGFRTKRYNVLVATDVA-GRGIDI-P--DVAHVINYD 590 (671)
Q Consensus 538 ~-~~v~~-lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~-~~GiDI-p--~v~~VI~~d 590 (671)
+ +.+.. +||.++..+++.+++.|.+|+++|||+|+.+ ..-.+. . ..++|+.-|
T Consensus 153 ~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 153 GSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred CCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEcc
Confidence 2 44433 9999999999999999999999999999753 333322 1 345666444
No 296
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.48 E-value=0.1 Score=61.81 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
..++|-|.+|+... ...++|.|..|||||.+.+.-+...+... .-....+|+++-|+..|..+.+.+.++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~-------~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEK-------NVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcC-------CCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 35788999888653 45799999999999987666555544321 112357999999999998777666654
No 297
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.41 E-value=0.29 Score=57.38 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=70.8
Q ss_pred chhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHc-CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccc
Q 038133 499 SEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKL-GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575 (671)
Q Consensus 499 ~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~ 575 (671)
+.|......++... .+..+||.++++.-+..+.+.|.+. +..+..+||+++..++..+...+.+|..+|+|+|..+-
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 44554444333221 3678999999999999999999764 78899999999999999999999999999999997432
Q ss_pred ccCCCCCCcEEEEcC
Q 038133 576 RGIDIPDVAHVINYD 590 (671)
Q Consensus 576 ~GiDIp~v~~VI~~d 590 (671)
-+.+.++.+||.-+
T Consensus 253 -~~p~~~l~liVvDE 266 (679)
T PRK05580 253 -FLPFKNLGLIIVDE 266 (679)
T ss_pred -cccccCCCEEEEEC
Confidence 25567888888544
No 298
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.40 E-value=0.33 Score=54.17 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=17.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l 310 (671)
+.+|++||.|+|||.++.+.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 3699999999999987765543
No 299
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.40 E-value=0.26 Score=55.66 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=70.7
Q ss_pred chhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHc-CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccc
Q 038133 499 SEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKL-GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575 (671)
Q Consensus 499 ~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~ 575 (671)
+.|......++... .+.++||.++++.-+..+++.|++. +..+.++||+++..+|..+.....+|+.+|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 44555544444321 3678999999999999999999764 77899999999999999999999999999999996532
Q ss_pred ccCCCCCCcEEEEcC
Q 038133 576 RGIDIPDVAHVINYD 590 (671)
Q Consensus 576 ~GiDIp~v~~VI~~d 590 (671)
. +.++++.+||.-+
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 4567888888543
No 300
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.34 E-value=0.33 Score=49.83 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=15.8
Q ss_pred cEEEEcCCCChHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~ 308 (671)
++++.||+|+|||.++-+.
T Consensus 44 ~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred eEEEEcCCCCCHHHHHHHH
Confidence 6899999999999765443
No 301
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.32 E-value=0.23 Score=62.22 Aligned_cols=123 Identities=18% Similarity=0.115 Sum_probs=77.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhh
Q 038133 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHY 353 (671)
Q Consensus 274 p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~ 353 (671)
.|+-|.+||. ..+++++|.|.-|||||.+.+--++..+... ..-..+|+|+=|+..|..+.+.+.+....
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--------~~~~~il~~tFt~~aa~e~~~ri~~~l~~ 71 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG--------VDIDRLLVVTFTNAAAREMKERIEEALQK 71 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--------CCHhhEEEEeccHHHHHHHHHHHHHHHHH
Confidence 5788999997 4688999999999999998877777766531 12356999999999998877766664332
Q ss_pred cCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCC--ccEEEEcccch
Q 038133 354 LGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ--CNYVVLDEADR 412 (671)
Q Consensus 354 ~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~--~~~vViDEah~ 412 (671)
.- . ...........+..-...-|+|-..+...+-+.+...-. .++=|+||...
T Consensus 72 ~~-~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 72 AL-Q-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HH-h-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 10 0 000001111112222456789988886555444332222 35667888875
No 302
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.31 E-value=0.18 Score=52.95 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=41.3
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 264 RAVERVGYKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 264 ~~i~~~g~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
+.+.+.|. +++-|...+..+. .+++++++|+||||||. ++..++..+... ....+++++=.+.||.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~--------~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKN--------DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhcc--------CCCceEEEECCchhhc
Confidence 33434443 4555555555444 56789999999999995 445565655321 1245677777777763
No 303
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.25 E-value=0.21 Score=56.55 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=75.0
Q ss_pred chhHHHHHHHHHHh-CCCcEEEEecC----hhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc
Q 038133 499 SEKFSRLQRLLDEL-GDKTAIVFVNT----KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573 (671)
Q Consensus 499 ~~k~~~L~~ll~~~-~~~~iIVF~~~----~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~ 573 (671)
....-.+..++... .+.++.+.++| ..+...+.+.|...|+.+..+.|.+....|..+++...+|+++|+|.|.+
T Consensus 295 GKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA 374 (677)
T COG1200 295 GKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA 374 (677)
T ss_pred CHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch
Confidence 34455556666554 37789999999 45666777777778999999999999999999999999999999999975
Q ss_pred -ccccCCCCCCcEEEEcC
Q 038133 574 -AGRGIDIPDVAHVINYD 590 (671)
Q Consensus 574 -~~~GiDIp~v~~VI~~d 590 (671)
+...+++.+..+||.-.
T Consensus 375 LiQd~V~F~~LgLVIiDE 392 (677)
T COG1200 375 LIQDKVEFHNLGLVIIDE 392 (677)
T ss_pred hhhcceeecceeEEEEec
Confidence 57889999999888543
No 304
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.25 E-value=0.15 Score=56.76 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=45.9
Q ss_pred HHHHHHHHh--CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcC
Q 038133 278 QMAAIPLGL--QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLG 355 (671)
Q Consensus 278 Q~~ai~~il--~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~ 355 (671)
|.+-=.++. .++-++|+|..|||||.+++--+.-.+.... ...++..|||+.|++.+..=+ ..+...+|
T Consensus 214 QkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R-----~~l~~k~vlvl~PN~vFleYi----s~VLPeLG 284 (747)
T COG3973 214 QKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR-----GPLQAKPVLVLGPNRVFLEYI----SRVLPELG 284 (747)
T ss_pred hHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc-----cccccCceEEEcCcHHHHHHH----HHhchhhc
Confidence 443334444 3456899999999999888765544444322 223556699999999998744 44444455
Q ss_pred cE
Q 038133 356 IK 357 (671)
Q Consensus 356 i~ 357 (671)
..
T Consensus 285 e~ 286 (747)
T COG3973 285 EE 286 (747)
T ss_pred cC
Confidence 43
No 305
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.24 E-value=0.26 Score=49.52 Aligned_cols=46 Identities=33% Similarity=0.468 Sum_probs=31.4
Q ss_pred CCCCCcccCCCCHHHHH-HHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 248 RPMRNWAEGKLTPELLR-AVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 248 ~pi~~f~e~~l~~~i~~-~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
..+-.|++++||+-+.+ ++.+-|. +|++|+|||||+.. +..|+.|-
T Consensus 105 ~~IPt~eeL~LPevlk~la~~kRGL-------------------viiVGaTGSGKSTt-mAaMi~yR 151 (375)
T COG5008 105 TKIPTFEELKLPEVLKDLALAKRGL-------------------VIIVGATGSGKSTT-MAAMIGYR 151 (375)
T ss_pred ccCCcHHhcCCcHHHHHhhcccCce-------------------EEEECCCCCCchhh-HHHHhccc
Confidence 34557888888776655 3444454 89999999999965 44555543
No 306
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.23 E-value=0.95 Score=49.63 Aligned_cols=61 Identities=20% Similarity=0.147 Sum_probs=35.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec--chhhHHHHHHHHHHHHhhcCcEEEEEECC
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP--TRELAQQIEEETVKFAHYLGIKVVSIVGG 364 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P--tr~La~Qi~~~~~k~~~~~~i~v~~~~gg 364 (671)
-++++|++|+|||.+..-.+. ++.. .|.++++++- .|.-|. .+++.++...++.+.....+
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~----------~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~ 164 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR----------KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTE 164 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH----------CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCC
Confidence 478999999999976554443 3322 3555555442 344343 23444555566666554443
No 307
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.23 E-value=0.22 Score=57.94 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=65.3
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-ccccCCCCCCcEEE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-AGRGIDIPDVAHVI 587 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~~~GiDIp~v~~VI 587 (671)
.+.+++|.+++..-|..+++.+.+. |+.+..+||+++..++..++..+.+|..+|+|+|.. +...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3678999999999988888777654 789999999999999999999999999999999974 45567888888888
Q ss_pred E
Q 038133 588 N 588 (671)
Q Consensus 588 ~ 588 (671)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 308
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.21 E-value=0.4 Score=52.05 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=21.6
Q ss_pred HHHHhCCCcEEEEcCCCChHHHHHHH
Q 038133 282 IPLGLQQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 282 i~~il~~rd~ii~a~TGsGKT~~~ll 307 (671)
+|.+-.+.|++..||+|+|||..|..
T Consensus 203 ~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 203 LPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 36666889999999999999976654
No 309
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.19 E-value=0.48 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=17.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
.++++.||+|+|||.+.-. ++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~-v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKK-VFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 5799999999999976433 34433
No 310
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.04 E-value=0.42 Score=51.83 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=35.2
Q ss_pred CccEEEEcccchhhcc-CChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHH
Q 038133 401 QCNYVVLDEADRMIDM-GFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464 (671)
Q Consensus 401 ~~~~vViDEah~~~~~-~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~ 464 (671)
++++++||.++.+... .....+..++..+... ..|+++.|...|....
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~----------------~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN----------------GKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc----------------CCEEEEEcCCCchhhc
Confidence 7899999999987654 4566777777777653 3478887777776654
No 311
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.97 E-value=0.41 Score=56.17 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.2
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
++++.||+|+|||..+-+
T Consensus 54 slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 54 SLILYGPPGVGKTTLARI 71 (725)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 699999999999976544
No 312
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.95 E-value=0.12 Score=51.49 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=30.7
Q ss_pred cCCccEEEEcccchhhcc-CChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHH
Q 038133 399 LNQCNYVVLDEADRMIDM-GFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAV 463 (671)
Q Consensus 399 l~~~~~vViDEah~~~~~-~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~ 463 (671)
+..+++||||.+|.+... .....+..++..+... ..++++.|...|...
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~----------------~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES----------------GKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT----------------TSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh----------------CCeEEEEeCCCCccc
Confidence 557899999999988543 2344555666655332 356776666665543
No 313
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.92 E-value=0.63 Score=49.21 Aligned_cols=87 Identities=23% Similarity=0.315 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEe-cc-hhhHHHHHHHHHHHHhhcCcEEEEEECCC
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA-PT-RELAQQIEEETVKFAHYLGIKVVSIVGGQ 365 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~-Pt-r~La~Qi~~~~~k~~~~~~i~v~~~~gg~ 365 (671)
+.-++++||+|+|||......+..+. ..+..++++. .+ +..|.+ .+..++...++.++....+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~-----------~~g~~V~Li~~D~~r~~a~e---ql~~~a~~~~i~~~~~~~~~ 179 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK-----------AQGKKVLLAAGDTFRAAAIE---QLQVWGERVGVPVIAQKEGA 179 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-----------hcCCeEEEEecCccchhhHH---HHHHHHHHcCceEEEeCCCC
Confidence 34588899999999976544443322 1455565554 44 333322 12233334556554443332
Q ss_pred chHHH-----HHHHhcCCe-EEEEcchHH
Q 038133 366 SIEEQ-----GFRIRQGCE-VVIATPGRL 388 (671)
Q Consensus 366 ~~~~~-----~~~l~~~~~-IiI~Tp~~L 388 (671)
..... ......+++ |+|=||+++
T Consensus 180 dpa~~v~~~l~~~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 180 DPASVAFDAIQAAKARGIDVLIIDTAGRL 208 (318)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 22111 112234454 677788776
No 314
>CHL00181 cbbX CbbX; Provisional
Probab=93.79 E-value=0.56 Score=48.89 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=17.0
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~ 309 (671)
-++++.||+|+|||.++-..+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999998765544
No 315
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.77 E-value=0.17 Score=54.30 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhh
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~L 339 (671)
+..++++||||||||... ..++.++.. ..+..++.+-...++
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~---------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINK---------NAAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCc---------CCCCEEEEEcCChhh
Confidence 456899999999999653 445555432 123456665554443
No 316
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.71 E-value=0.47 Score=55.17 Aligned_cols=91 Identities=22% Similarity=0.226 Sum_probs=74.9
Q ss_pred chhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHc-C-CeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccc
Q 038133 499 SEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKL-G-YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA 574 (671)
Q Consensus 499 ~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~-~-~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~ 574 (671)
+.|.+....++... .+..+||.++.+..+..+...|+.. + ..+..+|+++++.+|........+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 46777777777653 3778999999999999999999865 4 679999999999999999999999999999999753
Q ss_pred cccCCCCCCcEEEEcC
Q 038133 575 GRGIDIPDVAHVINYD 590 (671)
Q Consensus 575 ~~GiDIp~v~~VI~~d 590 (671)
-=.-+++..+||..+
T Consensus 251 -vFaP~~~LgLIIvdE 265 (665)
T PRK14873 251 -VFAPVEDLGLVAIWD 265 (665)
T ss_pred -EEeccCCCCEEEEEc
Confidence 234566778887554
No 317
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.48 Score=52.98 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=31.2
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHH
Q 038133 246 IPRPMRNWAEGKLTPELLRAVERV---GYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 246 ip~pi~~f~e~~l~~~i~~~i~~~---g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ 305 (671)
+.-|=-+|++.|--.++...|.-. ..+.|--++. +-.- .-..+++|||.|+|||+.+
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~--lGi~-~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKA--LGID-APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHH--hCCC-CCCceEEeCCCCccHHHHH
Confidence 344556888877655554444321 1222222221 1111 1246999999999999754
No 318
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.57 E-value=1.6 Score=41.51 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=15.9
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~ 311 (671)
+++.|++|+|||......+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999775554433
No 319
>PRK04195 replication factor C large subunit; Provisional
Probab=93.53 E-value=0.47 Score=53.37 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
.+.+++.||+|+|||..+-.
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45799999999999976433
No 320
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.49 E-value=0.063 Score=61.19 Aligned_cols=126 Identities=14% Similarity=0.135 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHH-HHHH
Q 038133 273 NPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE-ETVK 349 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~--rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~-~~~k 349 (671)
..+|||.+.+..+... +.+.++.++-+|||.+.+..+ -+... .....+|++.||..+|..+.. .+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~-g~~i~---------~~P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWI-GYSID---------QDPGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhc-eEEEE---------eCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 5678888888877754 579999999999998654433 33332 234568999999999998763 3444
Q ss_pred HHhhcCcEEEEEEC---CCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhh
Q 038133 350 FAHYLGIKVVSIVG---GQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI 414 (671)
Q Consensus 350 ~~~~~~i~v~~~~g---g~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~ 414 (671)
+....+.--..+.. .............|..|.++..+.-..+ .-..+.+|++||+|.+-
T Consensus 86 mi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~l------~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 86 MIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSNL------RSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCCccc------ccCCcCEEEEechhhcc
Confidence 44333211111111 0000111111122555655544332111 23457899999999884
No 321
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=0.8 Score=51.16 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=16.0
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|++||+|+|||..+.+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999997765543
No 322
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.44 E-value=0.46 Score=55.17 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEE--EecccccccCCC
Q 038133 546 GGKSQEQREISLEGFRTKRYNVL--VATDVAGRGIDI 580 (671)
Q Consensus 546 g~~~~~~R~~~l~~F~~g~~~VL--VaT~~~~~GiDI 580 (671)
|..+.+.-..+++.+.+|+..-+ +...+...|+|.
T Consensus 242 G~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 242 GALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 55666666667777777775533 344566677765
No 323
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.37 E-value=0.21 Score=57.02 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=17.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~ 311 (671)
..|++||.|+|||.++-+.+-.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999876665433
No 324
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.36 E-value=0.89 Score=48.03 Aligned_cols=42 Identities=21% Similarity=0.109 Sum_probs=30.9
Q ss_pred CCCCcHHHHHHHHHHh----CCC---cEEEEcCCCChHHHHHHHHHHHH
Q 038133 271 YKNPSPIQMAAIPLGL----QQR---DVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 271 ~~~p~~~Q~~ai~~il----~~r---d~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
|..++|+|..++..+. +++ .+++.||.|+||+..+...+-..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 3467899999988776 333 48999999999997665544333
No 325
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.35 E-value=0.65 Score=49.66 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=51.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH----HHHHHHHHhh-cCcEEEEEECCCc
Q 038133 292 IGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI----EEETVKFAHY-LGIKVVSIVGGQS 366 (671)
Q Consensus 292 ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi----~~~~~k~~~~-~~i~v~~~~gg~~ 366 (671)
++.++.|+|||.+....++.++...+ .+..++++ ||..-+... ...+..+... +.+..........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~--------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP--------PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS--------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC--------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE
Confidence 57789999999988887888776522 12444444 666655542 2223333332 1222211111111
Q ss_pred hHHHHHHHhcCCeEEEEcchHH--HHHHhhcccccCCccEEEEcccchhhccCChHHH
Q 038133 367 IEEQGFRIRQGCEVVIATPGRL--IDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQV 422 (671)
Q Consensus 367 ~~~~~~~l~~~~~IiI~Tp~~L--~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i 422 (671)
.+.+|..|.+.+.+.- ..-+. -..+++|++||+-.+.+..+...+
T Consensus 72 ------~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~ 118 (384)
T PF03237_consen 72 ------ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELI 118 (384)
T ss_dssp ------EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHH
T ss_pred ------EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHH
Confidence 1145667776664321 11111 367889999998876544333333
No 326
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.29 E-value=0.58 Score=52.62 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=17.2
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l 310 (671)
.+|++||.|+|||.++-+.+-
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999987665543
No 327
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.27 E-value=0.65 Score=51.67 Aligned_cols=134 Identities=10% Similarity=0.005 Sum_probs=78.8
Q ss_pred CCcHHHHHHHHHHhC------C----CcEEEEcCCCChHHHHHH-HHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 273 NPSPIQMAAIPLGLQ------Q----RDVIGIAETGSGKTAAFV-LPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~------~----rd~ii~a~TGsGKT~~~l-l~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
.+-|+|.-++-.++- + +..+|..|-|-|||..+. +.+...+.. ...+..+.|++|+.+-|.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~--------~~~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLN--------WRSGAGIYILAPSVEQAA 132 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhh--------hhcCCcEEEEeccHHHHH
Confidence 577899988888871 2 247888999999996544 333333322 246888999999999999
Q ss_pred HHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH---HHHHhh--cccccCCccEEEEcccchhhcc
Q 038133 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL---IDCLER--RYAVLNQCNYVVLDEADRMIDM 416 (671)
Q Consensus 342 Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L---~~~l~~--~~~~l~~~~~vViDEah~~~~~ 416 (671)
+....++......+ +.. .......+....++... +..+.. +...-.++.+.|+||.|.+.+.
T Consensus 133 ~~F~~ar~mv~~~~--------~l~-----~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 133 NSFNPARDMVKRDD--------DLR-----DLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred HhhHHHHHHHHhCc--------chh-----hhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH
Confidence 88877776654433 000 00011112222222222 222221 2233556889999999987654
Q ss_pred CChHHHHHHHHhC
Q 038133 417 GFEPQVVGVLDAM 429 (671)
Q Consensus 417 ~f~~~i~~il~~l 429 (671)
+ ..+..+...+
T Consensus 200 ~--~~~~~~~~g~ 210 (546)
T COG4626 200 E--DMYSEAKGGL 210 (546)
T ss_pred H--HHHHHHHhhh
Confidence 3 3444444444
No 328
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.26 E-value=1.8 Score=47.67 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=33.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEE-EEecch-hhHHHHHHHHHHHHhhcCcEEEEEE
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAV-VMAPTR-ELAQQIEEETVKFAHYLGIKVVSIV 362 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vL-il~Ptr-~La~Qi~~~~~k~~~~~~i~v~~~~ 362 (671)
-++++|++|+|||.++.-.+..+... .|.+++ |-|.+. ..|. +.+..++...++.+....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~----------~g~kV~lV~~D~~R~~a~---~QL~~~a~~~gvp~~~~~ 162 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK----------QGKKVLLVACDLYRPAAI---EQLKVLGQQVGVPVFALG 162 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh----------CCCeEEEEeccccchHHH---HHHHHHHHhcCCceEecC
Confidence 48899999999998766555443211 344444 444433 2222 234444555666655433
No 329
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.22 E-value=0.38 Score=55.04 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=17.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~ 311 (671)
-+|++|+.|+|||..+.+.+-.
T Consensus 40 A~LFtGP~GvGKTTLAriLAka 61 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKS 61 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999876654433
No 330
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.17 E-value=0.15 Score=54.46 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=30.8
Q ss_pred HHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 284 LGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 284 ~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
.+..+.+++++|+||||||.. +-.++.++- ...+++.+=.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~-----------~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIP-----------PQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccC-----------CCCCEEEECCCcccc
Confidence 344678999999999999953 444544431 344577777777764
No 331
>PRK13764 ATPase; Provisional
Probab=93.16 E-value=0.2 Score=57.12 Aligned_cols=27 Identities=15% Similarity=0.438 Sum_probs=20.5
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHh
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYIS 314 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~ 314 (671)
.+++++++|+||||||. ++..++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 35689999999999995 4455666664
No 332
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.15 E-value=0.53 Score=48.28 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=34.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcC
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLG 355 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~ 355 (671)
|.-+++.|++|+|||...+-.+...+. .|..++|+.-- +-..++.+.+...+..+|
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~-----------~Ge~vlyis~E-e~~~~~~~~l~~~a~~~g 91 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS-----------RGNPVLFVTVE-SPANFVYTSLKERAKAMG 91 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-----------CCCcEEEEEec-CCchHHHHHHHHHHHHcC
Confidence 446899999999999766655554442 46778887743 333434334444444343
No 333
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.09 E-value=1.1 Score=45.03 Aligned_cols=51 Identities=6% Similarity=0.070 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
.|.-+++.|++|+|||..++..+...+. .|..+++++. .+-..++.+.+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-----------~g~~~~yi~~-e~~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-----------NGYSVSYVST-QLTTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-----------CCCcEEEEeC-CCCHHHHHHHHHH
Confidence 3557999999999999765554444332 4677888884 4444555454443
No 334
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.06 E-value=0.6 Score=49.63 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=15.6
Q ss_pred cEEEEcCCCChHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~ 308 (671)
.+++.||+|+|||..+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~ 56 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRAL 56 (337)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6999999999999765443
No 335
>PTZ00293 thymidine kinase; Provisional
Probab=93.04 E-value=0.34 Score=47.78 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=29.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTR 337 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr 337 (671)
|+--++.||++||||.-.+..+..+.. .+..++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~-----------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTY-----------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHH-----------cCCceEEEEecc
Confidence 445688999999999776666655543 578899999953
No 336
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.03 E-value=1.7 Score=41.41 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=64.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHH
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQ 370 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 370 (671)
+.+--..|=|||.+++--++..+ +.|.+|+|+-=.+.--. +.+..-+...-++.+...-.+-.....
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~-----------G~G~rV~ivQFlKg~~~--~GE~~~l~~l~~~~~~~~g~~f~~~~~ 72 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA-----------GHGMRVLIVQFLKGGRY--SGELKALKKLPNVEIERFGKGFVWRMN 72 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH-----------CTT--EEEEESS--SS----HHHHHHGGGT--EEEE--TT----GG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH-----------hCCCEEEEEEEecCCCC--cCHHHHHHhCCeEEEEEcCCcccccCC
Confidence 55666789999999988888776 47889999876655111 123333322222333221111100000
Q ss_pred HHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCCh--HHHHHHHHhCCCCCCCCCCchhhhhhhhh
Q 038133 371 GFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFE--PQVVGVLDAMPSSNLKPENEDEELDEKRI 448 (671)
Q Consensus 371 ~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~--~~i~~il~~l~~~~~~~~~~~~~~~~~~~ 448 (671)
... .+ .......++... ..+.-..+++||+||+-..++.++. ..+..++..-|.
T Consensus 73 ~~~----~~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~----------------- 128 (172)
T PF02572_consen 73 EEE----ED--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPE----------------- 128 (172)
T ss_dssp GHH----HH--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-T-----------------
T ss_pred CcH----HH--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCC-----------------
Confidence 000 00 001111122221 1222467999999999998888864 355566664443
Q ss_pred cceEEEEeccCCHHHHHHHH
Q 038133 449 YRTTYMFSATMPPAVERLAR 468 (671)
Q Consensus 449 ~~q~i~~SAT~~~~~~~l~~ 468 (671)
...+|+.--.+|+.+...+.
T Consensus 129 ~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 129 SLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp T-EEEEE-SS--HHHHHH-S
T ss_pred CeEEEEECCCCCHHHHHhCC
Confidence 34566666667766665543
No 337
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.02 E-value=0.2 Score=49.45 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
++|+.||+|+|||.+.+..+-..
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHH
Confidence 69999999999998866555433
No 338
>PRK06620 hypothetical protein; Validated
Probab=92.88 E-value=0.23 Score=49.43 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
+.++++||+|+|||...
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35999999999999754
No 339
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.87 E-value=0.53 Score=51.35 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
+.+++.||+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 57999999999999764
No 340
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.86 E-value=0.38 Score=50.60 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
++.+++.|++|+|||..+...+-..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999997655444333
No 341
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.84 E-value=0.14 Score=57.64 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCChHHHHHHHHHHHHHhc
Q 038133 273 NPSPIQMAAIPLGL----QQRDVIGIAETGSGKTAAFVLPMLTYISR 315 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~ 315 (671)
.|+.||.+.+..+. .|+-.|+-.|||+|||+..+..++.|+..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 78899988877665 68889999999999999999999999854
No 342
>PLN03025 replication factor C subunit; Provisional
Probab=92.80 E-value=0.67 Score=49.09 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=16.0
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
++++.||+|+|||..+...+
T Consensus 36 ~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALA 55 (319)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999997654433
No 343
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.78 E-value=0.62 Score=55.12 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=15.4
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~ 309 (671)
+|++||.|+|||.++.+.+
T Consensus 41 yLFtGPpGtGKTTLARiLA 59 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFA 59 (944)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998765544
No 344
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=1.3 Score=48.46 Aligned_cols=20 Identities=30% Similarity=0.125 Sum_probs=16.5
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|++||.|+|||.++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998766644
No 345
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.73 E-value=0.18 Score=53.57 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=30.4
Q ss_pred HhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 285 GLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 285 il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
+..+++++++|+||||||. ++-.++.++- ...+++++=-+.||.
T Consensus 157 v~~~~nili~G~tgSGKTT-ll~aL~~~ip-----------~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTT-FTNAALREIP-----------AIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHH-HHHHHHhhCC-----------CCCeEEEecCCCccc
Confidence 3467899999999999995 4555655552 345666665666654
No 346
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.68 E-value=0.084 Score=65.47 Aligned_cols=94 Identities=24% Similarity=0.410 Sum_probs=77.8
Q ss_pred cEEEEecChhhHHHHHHHHHHcC-CeEEEecCCCCH-----------HHHHHHHHHhhcCCCcEEEecccccccCCCCCC
Q 038133 516 TAIVFVNTKKNADMVAKNLDKLG-YRVTTLHGGKSQ-----------EQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583 (671)
Q Consensus 516 ~iIVF~~~~~~~~~l~~~L~~~~-~~v~~lhg~~~~-----------~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v 583 (671)
-.|+||+....+..++..+.... ..+..+.|.+.+ -.+..++..|....+++|++|.++..|+|++-+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 35899999999888888887662 334445554332 246778999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhcccCCCC
Q 038133 584 AHVINYDMPGNIEMYTHRIGRTGRAG 609 (671)
Q Consensus 584 ~~VI~~d~p~s~~~y~QriGR~gR~G 609 (671)
+.|+.++.|.....|+|..||+-+++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999987754
No 347
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.65 E-value=0.36 Score=48.28 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=33.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccC-CCeEEEEecchhhHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE-GPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~-g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
|..+++.|++|+|||...+-.+...+. + |..+++++- .+-..++.+.+..+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~-----------~~ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLK-----------NFGEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH-----------HHT--EEEEES-SS-HHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhh-----------hcCCcEEEEEe-cCCHHHHHHHHHHc
Confidence 457999999999999876666666653 4 677887774 44455555555543
No 348
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.62 E-value=0.27 Score=50.57 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHhC--CCcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 275 SPIQMAAIPLGLQ--QRDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 275 ~~~Q~~ai~~il~--~rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
.+.|.+.+..++. +..++++|+||||||.. +..++.++
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 3445555544443 33589999999999964 44455554
No 349
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.61 E-value=0.58 Score=56.46 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=65.5
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-cccccCCCCCCcEEE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-VAGRGIDIPDVAHVI 587 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-~~~~GiDIp~v~~VI 587 (671)
.+.+++|.+++..-|...++.+.+. ++.+..++|+.+..++..++..+.+|..+|+|+|. ++...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3678999999999999988877754 67888999999999999999999999999999997 455678888999888
Q ss_pred E
Q 038133 588 N 588 (671)
Q Consensus 588 ~ 588 (671)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 350
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.58 E-value=1 Score=46.91 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCChHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~ 308 (671)
+.++++.||+|+|||.++...
T Consensus 58 ~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 447999999999999876443
No 351
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.55 E-value=1.2 Score=51.54 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.2
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l 310 (671)
+|+.||.|+|||.++.+.+-
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999987665543
No 352
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=0.94 Score=48.84 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=17.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
.++++-|+||+|||.+.-. ++..+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l 66 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEEL 66 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHH
Confidence 4699999999999976544 33444
No 353
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.52 E-value=0.44 Score=54.54 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=17.2
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l 310 (671)
.+|+.||.|+|||.++.+.+-
T Consensus 40 a~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999988766553
No 354
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.49 E-value=0.35 Score=54.55 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=16.3
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|++||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lA 59 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILA 59 (509)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47999999999998765544
No 355
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.48 E-value=0.47 Score=54.05 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=16.8
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~ 309 (671)
+.+|+.||.|+|||..+.+.+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999997765544
No 356
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.44 E-value=0.36 Score=55.67 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.6
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|++||.|+|||.++.+.+
T Consensus 40 a~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999998765544
No 357
>PF11661 DUF2986: Protein of unknown function (DUF2986); InterPro: IPR021677 This family of proteins has no known function.
Probab=92.39 E-value=0.089 Score=37.15 Aligned_cols=17 Identities=47% Similarity=0.808 Sum_probs=15.4
Q ss_pred CCCccccHHHHHHHHHH
Q 038133 13 KKPLFLTKAQREQLALE 29 (671)
Q Consensus 13 ~~~~f~~k~~r~~~a~~ 29 (671)
.||+++||++||+++.+
T Consensus 26 nKpkYISKAeR~kl~ae 42 (44)
T PF11661_consen 26 NKPKYISKAERAKLAAE 42 (44)
T ss_pred CCCCccCHHHHHHHHHc
Confidence 59999999999999875
No 358
>PF13173 AAA_14: AAA domain
Probab=92.37 E-value=1.6 Score=39.32 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=19.2
Q ss_pred CccEEEEcccchhhccCChHHHHHHHHhC
Q 038133 401 QCNYVVLDEADRMIDMGFEPQVVGVLDAM 429 (671)
Q Consensus 401 ~~~~vViDEah~~~~~~f~~~i~~il~~l 429 (671)
.-.+|+|||+|.+- ++...+..+.+..
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG 87 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc
Confidence 55789999999984 4556666666543
No 359
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.36 E-value=1.2 Score=47.19 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHhC--CC---cEEEEcCCCChHHHHHHHHHHHHH
Q 038133 274 PSPIQMAAIPLGLQ--QR---DVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 274 p~~~Q~~ai~~il~--~r---d~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
.+|+|..+|..+.+ ++ .+++.||.|.|||..+...+-..+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 46788888877763 22 589999999999977655544433
No 360
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.26 E-value=0.66 Score=53.32 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.3
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
-+|++||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999998776644
No 361
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.24 E-value=0.9 Score=52.21 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=15.9
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
..|+.||.|+|||.++.+.+
T Consensus 40 ayLf~Gp~G~GKtt~A~~la 59 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILA 59 (576)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998765533
No 362
>PF12846 AAA_10: AAA-like domain
Probab=92.23 E-value=0.44 Score=49.47 Aligned_cols=58 Identities=29% Similarity=0.496 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECC
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGG 364 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg 364 (671)
+.+++++|+||||||.... .++..+.. .|..++|+=|..+... ++...+..+..+..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~----------~g~~~~i~D~~g~~~~--------~~~~~~~~~i~~~~~ 58 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR----------RGPRVVIFDPKGDYSP--------LARALGGQYIDIDPG 58 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH----------cCCCEEEEcCCchHHH--------HHHhcCceEEEeecC
Confidence 4579999999999997766 44444432 5788888877755444 333355555544443
No 363
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.21 E-value=1.9 Score=45.93 Aligned_cols=40 Identities=13% Similarity=-0.039 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHhC--C---CcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 274 PSPIQMAAIPLGLQ--Q---RDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 274 p~~~Q~~ai~~il~--~---rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
++|+|...+..+.+ + ..+++.||.|.||+..+...+-..+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 46788888877764 2 3588999999999977655554433
No 364
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.21 E-value=1.1 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=17.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
.++++.||+|+|||.+. ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999654 3344444
No 365
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.21 E-value=0.79 Score=50.93 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=31.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
|.-+++.|++|+|||...+..+..... .+.+++|+.- .+-..|+...+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~-----------~g~~vlYvs~-Ees~~qi~~ra~r 129 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA-----------AGGKVLYVSG-EESASQIKLRAER 129 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh-----------cCCeEEEEEc-cccHHHHHHHHHH
Confidence 345889999999999765554444331 4667888774 3445555444433
No 366
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.21 E-value=1.5 Score=51.85 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.3
Q ss_pred EEEEcCCCChHHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~ 308 (671)
++|.|+||+|||++.-..
T Consensus 784 LYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSV 801 (1164)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 459999999999775443
No 367
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.20 E-value=1.4 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~ 309 (671)
..++|++||+|+|||..+-..+
T Consensus 207 ~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 4589999999999997754433
No 368
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.19 E-value=0.3 Score=55.88 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.4
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|++||.|+|||.++.+.+
T Consensus 39 AyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999998765544
No 369
>PRK10436 hypothetical protein; Provisional
Probab=92.17 E-value=0.32 Score=53.99 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=18.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHh
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYIS 314 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~ 314 (671)
.-++++||||||||... ..++.++.
T Consensus 219 GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 219 GLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CeEEEECCCCCChHHHH-HHHHHhhC
Confidence 45899999999999753 44556553
No 370
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.89 E-value=0.39 Score=51.87 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=15.8
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+++.||.|+|||..+...+
T Consensus 40 ~~L~~Gp~G~GKTtla~~la 59 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLA 59 (363)
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 36999999999997765543
No 371
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.83 E-value=0.48 Score=45.92 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHH
Q 038133 273 NPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 273 ~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~ 304 (671)
..++-|...+...+ .+..++++||||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 45666777776655 577899999999999965
No 372
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.80 E-value=0.87 Score=45.91 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=27.4
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
.|.-++++|++|+|||...+-.++..+.. .+..++++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----------~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK----------QGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCceEEEeC
Confidence 34568999999999997655555555432 3777888873
No 373
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.78 E-value=0.5 Score=55.04 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=75.8
Q ss_pred EEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHc-CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEe
Q 038133 494 VMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKL-GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVA 570 (671)
Q Consensus 494 ~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVa 570 (671)
.-++-+.|.+...+++... .+..+||.++.+.....+...|... |.++.++|+++++.+|........+|+.+|+|.
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 3445677878877777664 4789999999999999998888765 899999999999999999999999999999999
Q ss_pred cccccccCCCCCCcEEE
Q 038133 571 TDVAGRGIDIPDVAHVI 587 (671)
Q Consensus 571 T~~~~~GiDIp~v~~VI 587 (671)
|..+ -=.-+++..+||
T Consensus 303 tRSA-lF~Pf~~LGLII 318 (730)
T COG1198 303 TRSA-LFLPFKNLGLII 318 (730)
T ss_pred echh-hcCchhhccEEE
Confidence 9653 223455666666
No 374
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.77 E-value=0.52 Score=49.70 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
|+-+.+.||+|||||..++..+..... .|..++|+-.--.+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~-----------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK-----------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----------cCCcEEEEcccchhHH
Confidence 456889999999999776655555432 4677787765544443
No 375
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.75 E-value=1.8 Score=47.27 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=17.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~ 311 (671)
+.+|+.||.|+|||..+...+-.
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999776555433
No 376
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.73 E-value=1.3 Score=42.82 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=34.4
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.|.-+++.|++|+|||...+-.+..++...+... .....+..+|++..--. ..++...+..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g-~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLG-ELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT----------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCC-cccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 3445899999999999776666666664333222 11124566777766544 5556666665543
No 377
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=1.4 Score=46.88 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
+.++++||.|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 57999999999999754
No 378
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.63 E-value=0.35 Score=49.28 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=18.5
Q ss_pred chHHHHHHhhcccccCCccEEEEcccchh
Q 038133 385 PGRLIDCLERRYAVLNQCNYVVLDEADRM 413 (671)
Q Consensus 385 p~~L~~~l~~~~~~l~~~~~vViDEah~~ 413 (671)
|+-|...+.+ +..-+++.|||.|++
T Consensus 91 ~gDlaaiLt~----Le~~DVLFIDEIHrl 115 (332)
T COG2255 91 PGDLAAILTN----LEEGDVLFIDEIHRL 115 (332)
T ss_pred hhhHHHHHhc----CCcCCeEEEehhhhc
Confidence 4555555543 677789999999997
No 379
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.53 E-value=2.7 Score=48.52 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=16.0
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|++||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46999999999997765544
No 380
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.53 E-value=1.2 Score=48.16 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
|.-+++.|++|+|||...+..+..... .+..++|+.-. +-..|+...+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~-----------~g~~VlYvs~E-Es~~qi~~Ra 129 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK-----------RGGKVLYVSGE-ESPEQIKLRA 129 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECC-cCHHHHHHHH
Confidence 345889999999999765554443321 35678887654 3445554433
No 381
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.53 E-value=0.16 Score=48.65 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=30.2
Q ss_pred HHhcCCeEEEEcchHHHHHHhhcccc--cCCccEEEEcccchhhc
Q 038133 373 RIRQGCEVVIATPGRLIDCLERRYAV--LNQCNYVVLDEADRMID 415 (671)
Q Consensus 373 ~l~~~~~IiI~Tp~~L~~~l~~~~~~--l~~~~~vViDEah~~~~ 415 (671)
.....++|||+++..|++-..+.... ...-.+|||||||.+.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 44457999999999998766554432 23457899999998744
No 382
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.52 E-value=0.99 Score=49.31 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=30.2
Q ss_pred CCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHH
Q 038133 249 PMRNWAEGKLTPELLRAVERV---GYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~---g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ 305 (671)
|--+|.+.+-...+.+.|.+. .+..|.-++.-. +...+.+++.||+|+|||+.+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 334676666555555555432 222222222111 123568999999999999764
No 383
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.47 E-value=0.21 Score=46.54 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=63.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCC-eEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP-YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIE 368 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~-~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 368 (671)
.+++.|++|+|||... .-+...+.. .|. -.-|++| +.+.=.+..|++++.+..|....
T Consensus 7 ki~ITG~PGvGKtTl~-~ki~e~L~~----------~g~kvgGf~t~----------EVR~gGkR~GF~Ivdl~tg~~~~ 65 (179)
T COG1618 7 KIFITGRPGVGKTTLV-LKIAEKLRE----------KGYKVGGFITP----------EVREGGKRIGFKIVDLATGEEGI 65 (179)
T ss_pred EEEEeCCCCccHHHHH-HHHHHHHHh----------cCceeeeEEee----------eeecCCeEeeeEEEEccCCceEE
Confidence 5899999999999654 445555543 222 3446666 34444455677777766443210
Q ss_pred HHHHHHhcCCeEEEEcchHHHHHHhhccc-----ccCCccEEEEcccchhh--ccCChHHHHHHHHh
Q 038133 369 EQGFRIRQGCEVVIATPGRLIDCLERRYA-----VLNQCNYVVLDEADRMI--DMGFEPQVVGVLDA 428 (671)
Q Consensus 369 ~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~-----~l~~~~~vViDEah~~~--~~~f~~~i~~il~~ 428 (671)
.........-|+-++-..+.+++-.. .+..-++||+||+--|- ...|...+..++..
T Consensus 66 ---la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 66 ---LARVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred ---EEEcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 00011123444555444444442211 13345899999999773 34466666666543
No 384
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.46 E-value=0.97 Score=48.77 Aligned_cols=24 Identities=13% Similarity=-0.064 Sum_probs=17.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
-+|+.||.|+||+..+...+-..+
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999976655444433
No 385
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.38 E-value=0.48 Score=53.38 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=15.5
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~ 309 (671)
+|++||.|+|||.++.+.+
T Consensus 39 ~Lf~GppGtGKTTlA~~lA 57 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIA 57 (504)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5999999999998765443
No 386
>PHA00729 NTP-binding motif containing protein
Probab=91.29 E-value=0.52 Score=46.96 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.7
Q ss_pred cEEEEcCCCChHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~ 308 (671)
++++.|++|+|||..+...
T Consensus 19 nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6999999999999765443
No 387
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=1 Score=48.00 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=28.6
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCC--cHHHHHHHHHHhCCCcEEEEcCCCChHHHHH
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNP--SPIQMAAIPLGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p--~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ 305 (671)
..|...-|++.+-+-|.++-...- ..+|. --+|++.-||+|+|||+++
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~a-------pfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQA-------PFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccccc-------hhhheeeeCCCCCCchHHH
Confidence 345555677777777765421100 00000 1268999999999999753
No 388
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=91.21 E-value=2.7 Score=40.34 Aligned_cols=139 Identities=24% Similarity=0.231 Sum_probs=71.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHH-HHHHHHhhcCcEEEEEEC--CCch
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE-ETVKFAHYLGIKVVSIVG--GQSI 367 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~-~~~k~~~~~~i~v~~~~g--g~~~ 367 (671)
+++.-..|-|||.+++--++..+ +.|.+++|+.=-+--...=+. .+.+| +..+....- +...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~-----------GhG~rv~vvQFiKg~~~~GE~~~~~~~----~~~v~~~~~~~g~tw 95 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL-----------GHGLRVGVVQFIKGGWKYGEEAALEKF----GLGVEFHGMGEGFTW 95 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh-----------cCCCEEEEEEEeecCcchhHHHHHHhh----ccceeEEecCCceeC
Confidence 67778889999999888888877 468888887643322111111 12222 222221111 1111
Q ss_pred HHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCCh--HHHHHHHHhCCCCCCCCCCchhhhhh
Q 038133 368 EEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFE--PQVVGVLDAMPSSNLKPENEDEELDE 445 (671)
Q Consensus 368 ~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~--~~i~~il~~l~~~~~~~~~~~~~~~~ 445 (671)
+.+.. ..++ ......+.... ..+.-..+++||+||.--.+..++. ..+..++..-|.
T Consensus 96 ~~~~~----~~d~--~aa~~~w~~a~-~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~-------------- 154 (198)
T COG2109 96 ETQDR----EADI--AAAKAGWEHAK-EALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPE-------------- 154 (198)
T ss_pred CCcCc----HHHH--HHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCC--------------
Confidence 11100 0011 11222222111 1122346899999999988877754 344455554443
Q ss_pred hhhcceEEEEeccCCHHHHHHHH
Q 038133 446 KRIYRTTYMFSATMPPAVERLAR 468 (671)
Q Consensus 446 ~~~~~q~i~~SAT~~~~~~~l~~ 468 (671)
...+|+.--.+|+.+-.++.
T Consensus 155 ---~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 155 ---HTHVIITGRGAPPELIELAD 174 (198)
T ss_pred ---CcEEEEECCCCCHHHHHHHH
Confidence 34455555567777766654
No 389
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=91.19 E-value=0.81 Score=44.64 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=15.1
Q ss_pred EEEEcCCCChHHHHHHHH-HHHHH
Q 038133 291 VIGIAETGSGKTAAFVLP-MLTYI 313 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~-~l~~l 313 (671)
.+++|.+|||||+-++.- ++.++
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l 26 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPAL 26 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GG
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHH
Confidence 578999999999877666 44443
No 390
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.13 E-value=0.46 Score=54.44 Aligned_cols=44 Identities=30% Similarity=0.476 Sum_probs=27.9
Q ss_pred HHHcCCCCCcHHHHHHHHHHhC--CCcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 266 VERVGYKNPSPIQMAAIPLGLQ--QRDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 266 i~~~g~~~p~~~Q~~ai~~il~--~rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
+.++|| .+.|.+.+..++. +.-++++||||||||.+. ..++.++
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 444554 3455555555543 345789999999999663 4555655
No 391
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.11 E-value=0.28 Score=50.61 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=29.5
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
.+.+++++|+||||||.. +..++.++.. ...+++++-.+.|+.
T Consensus 126 ~~~~ili~G~tGSGKTT~-l~all~~i~~----------~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTL-LNALLEEIPP----------EDERIVTIEDPPELR 168 (270)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHCHT----------TTSEEEEEESSS-S-
T ss_pred cceEEEEECCCccccchH-HHHHhhhccc----------cccceEEecccccee
Confidence 467899999999999954 4555555532 246778887777664
No 392
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.10 E-value=1.1 Score=51.68 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=17.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~ 311 (671)
.+|++||.|+|||.++.+.+-.
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 5999999999999877665533
No 393
>PRK09354 recA recombinase A; Provisional
Probab=91.07 E-value=0.85 Score=48.60 Aligned_cols=43 Identities=21% Similarity=0.133 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
|+-+.+.||+|||||..++..+..... .|..++|+..--.+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~-----------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK-----------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----------cCCcEEEECCccchHH
Confidence 456889999999999877666655542 4778888887665554
No 394
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.03 E-value=1.7 Score=49.78 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~ 309 (671)
+|++||.|+|||.++.+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998776654
No 395
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.93 E-value=1.4 Score=43.24 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecc
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPT 336 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Pt 336 (671)
|.-+.+.||+|+|||...+..+..... .+..++|+.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~-----------~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR-----------QGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-----------CCCeEEEEECC
Confidence 456899999999999776655544432 46677777664
No 396
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.92 E-value=0.73 Score=56.97 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=64.3
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-cccccCCCCCCcEEE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-VAGRGIDIPDVAHVI 587 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-~~~~GiDIp~v~~VI 587 (671)
.+.+++|.|++..-|..+++.+.+. ++.+.+++|+.+..++..++..+.+|..+|+|+|. .+...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4778999999999999988888753 46788899999999999999999999999999996 455567777888887
Q ss_pred E
Q 038133 588 N 588 (671)
Q Consensus 588 ~ 588 (671)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 397
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=90.92 E-value=1.5 Score=41.90 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=74.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHH
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQ 370 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 370 (671)
+.+--..|-|||.+++--++..+ +.|.+|+|+.=.+.-... .+..-+...-++.+.. .|....-.
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa-----------G~G~rV~iiQFlKg~~~~--GE~~~l~~~~~v~~~~--~g~~~~~~ 88 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA-----------GQGTPVLIVQFLKGGIQQ--GPDRPIQLGQNLDWVR--CDLPRCLD 88 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh-----------cCCCEEEEEEEecCCCcc--hHHHHHHhCCCcEEEE--CCCCCeee
Confidence 55557889999999988888776 478999988755543211 1111111111333322 11110000
Q ss_pred HHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCCh--HHHHHHHHhCCCCCCCCCCchhhhhhhhh
Q 038133 371 GFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFE--PQVVGVLDAMPSSNLKPENEDEELDEKRI 448 (671)
Q Consensus 371 ~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~--~~i~~il~~l~~~~~~~~~~~~~~~~~~~ 448 (671)
. ....+.-.......++.... .+.-..+++||+||+-..++.|+- ..+..++..-|.
T Consensus 89 ~---~~~~~~~~~~~~~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~----------------- 147 (178)
T PRK07414 89 T---PHLDESEKKALQELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPS----------------- 147 (178)
T ss_pred C---CCcCHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCC-----------------
Confidence 0 00000000011122222211 122467999999999998888754 455566665554
Q ss_pred cceEEEEeccCCHHHHHHH
Q 038133 449 YRTTYMFSATMPPAVERLA 467 (671)
Q Consensus 449 ~~q~i~~SAT~~~~~~~l~ 467 (671)
...+|+.--.+|+.+..++
T Consensus 148 ~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 148 HVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCEEEEECCCCCHHHHHhC
Confidence 3456776666777665543
No 398
>PHA02535 P terminase ATPase subunit; Provisional
Probab=90.85 E-value=1.3 Score=50.02 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecc
Q 038133 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPT 336 (671)
Q Consensus 257 ~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Pt 336 (671)
.++......|.+.-...+.+||+.-+..-+..+..++.-.-=+|||..|..-++..... .|...++|.|+
T Consensus 122 ~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~----------~G~nqiflSas 191 (581)
T PHA02535 122 DISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALL----------TGRNQIFLSAS 191 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHh----------cCCceEEECCC
Confidence 57777778777776778999999887664445656666666789999887766665543 46678999999
Q ss_pred hhhHHHHHHHHHHHHhh
Q 038133 337 RELAQQIEEETVKFAHY 353 (671)
Q Consensus 337 r~La~Qi~~~~~k~~~~ 353 (671)
+..|.+..+.+..+++.
T Consensus 192 ~~QA~~f~~yi~~~a~~ 208 (581)
T PHA02535 192 KAQAHVFKQYIIAFARE 208 (581)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999888888787664
No 399
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.82 E-value=0.99 Score=51.25 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.1
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|+.||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILA 59 (527)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998765544
No 400
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=90.71 E-value=0.39 Score=49.41 Aligned_cols=22 Identities=18% Similarity=0.162 Sum_probs=17.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~ 311 (671)
+.+..||.|+|||.++++.+-+
T Consensus 59 ~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 59 HYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred eEEeeCCCCCcHhHHHHHHHHH
Confidence 5899999999999887665533
No 401
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.67 E-value=0.83 Score=48.22 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=30.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
|+-+.+.||.|||||..++..+..... .|..++|+.+--.+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~-----------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK-----------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----------cCCCEEEECccccHHH
Confidence 456889999999999766655554432 4777888887655554
No 402
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.65 E-value=0.74 Score=50.21 Aligned_cols=129 Identities=18% Similarity=0.078 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhc-
Q 038133 276 PIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL- 354 (671)
Q Consensus 276 ~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~- 354 (671)
..|..|.-..-.|.- .+.|=.|||||.+.+.-+...-++ ...-+++|.+-|+.|+.++.....+|+-..
T Consensus 165 ~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~k---------nPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~ 234 (660)
T COG3972 165 TDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSK---------NPDSRIAFTFFTKILASTMRTLVPEFFFMRV 234 (660)
T ss_pred chhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcC---------CCCceEEEEeehHHHHHHHHHHHHHHHHHHh
Confidence 345544322223333 456778999998766555444333 346789999999999999998888886322
Q ss_pred ------C-cEEEEEECCCchHHHHHHHhcCCe---EEEEcch----HHHHHHhhcccccCCccEEEEcccchhh
Q 038133 355 ------G-IKVVSIVGGQSIEEQGFRIRQGCE---VVIATPG----RLIDCLERRYAVLNQCNYVVLDEADRMI 414 (671)
Q Consensus 355 ------~-i~v~~~~gg~~~~~~~~~l~~~~~---IiI~Tp~----~L~~~l~~~~~~l~~~~~vViDEah~~~ 414 (671)
+ +-+.--.||.+.+........-|+ +-++-.+ .+..-+-.......-+++|.|||++-+-
T Consensus 235 e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDFP 308 (660)
T COG3972 235 EKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDFP 308 (660)
T ss_pred hcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccCC
Confidence 2 333344556554432222221121 2222111 1111111112235668999999999653
No 403
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.65 E-value=0.68 Score=49.24 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
..+++.||+|+|||..+..
T Consensus 52 ~~~ll~GppG~GKT~la~~ 70 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANI 70 (328)
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 4699999999999976543
No 404
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.60 E-value=0.32 Score=54.47 Aligned_cols=56 Identities=34% Similarity=0.461 Sum_probs=39.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEE
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSI 361 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~ 361 (671)
.+++++||||||||..+++|.+.. ...-++|.=|--+|...... +.+..|.+|.++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~-------------~~~s~iV~D~KgEl~~~t~~----~r~~~G~~V~vl 100 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN-------------YPGSMIVTDPKGELYEKTAG----YRKKRGYKVYVL 100 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh-------------ccCCEEEEECCCcHHHHHHH----HHHHCCCEEEEe
Confidence 369999999999999999997632 12268888898888775443 333345555544
No 405
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.54 E-value=1.6 Score=44.72 Aligned_cols=113 Identities=17% Similarity=0.134 Sum_probs=58.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 369 (671)
=+++.|.+|.|||..++-.+...+.. .+..|+|++.-- -..++...+.. ...++....+..+....+
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~----------~~~~vly~SlEm-~~~~l~~R~la--~~s~v~~~~i~~g~l~~~ 87 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALN----------GGYPVLYFSLEM-SEEELAARLLA--RLSGVPYNKIRSGDLSDE 87 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT----------TSSEEEEEESSS--HHHHHHHHHH--HHHTSTHHHHHCCGCHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHh----------cCCeEEEEcCCC-CHHHHHHHHHH--HhhcchhhhhhccccCHH
Confidence 37888999999997776666666542 357788887521 11222222221 122332222222322222
Q ss_pred HHHHH------hcCCeEEE-Ecc----hHHHHHHhhcccccCCccEEEEcccchhhc
Q 038133 370 QGFRI------RQGCEVVI-ATP----GRLIDCLERRYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 370 ~~~~l------~~~~~IiI-~Tp----~~L~~~l~~~~~~l~~~~~vViDEah~~~~ 415 (671)
....+ .....++| .++ +.+...+.........+++||||=.|.|-.
T Consensus 88 e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 88 EFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 11111 11334443 433 344444443333337889999999998755
No 406
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.52 E-value=0.19 Score=51.76 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=17.2
Q ss_pred hCCCcEEEEcCCCChHHHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~~l 306 (671)
++..|++++||||||||+.+.
T Consensus 95 L~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH
Confidence 445689999999999997653
No 407
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.49 E-value=3.6 Score=41.30 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=32.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
|.-+++.|++|+|||..+...+...+. .|.+++|+.-- +-..++.+.+..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-----------~g~~~~y~~~e-~~~~~~~~~~~~ 74 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-----------QGKKVYVITTE-NTSKSYLKQMES 74 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-----------CCCEEEEEEcC-CCHHHHHHHHHH
Confidence 346889999999999766555555442 46777777654 333445444444
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.47 E-value=1.3 Score=51.55 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=35.0
Q ss_pred CccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCH
Q 038133 401 QCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461 (671)
Q Consensus 401 ~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 461 (671)
..-|+|+|..|++.+......+..++.+.|. ..+.++.|-+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~-----------------~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPE-----------------NLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCC-----------------CeEEEEEeccCCC
Confidence 3469999999999888888888899999887 4667777766554
No 409
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.47 E-value=1.3 Score=45.06 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCChHHHH
Q 038133 287 QQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~ 304 (671)
.|..+++.||.|+|||..
T Consensus 15 ~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999953
No 410
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.46 E-value=0.61 Score=47.11 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=36.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
|..+++.|++|+|||..++..+...+. .|..++|++ +.+-..|+.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~-----------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-----------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 456899999999999877666665552 577888887 456666666665543
No 411
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.44 E-value=0.36 Score=50.62 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
.++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 359999999999996544
No 412
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.39 E-value=1.7 Score=43.53 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
|..+++.|++|+|||..++..+...+. .+..++++.. -+.+.++...+.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~-----------~g~~~~~is~-e~~~~~i~~~~~ 68 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR-----------DGDPVIYVTT-EESRESIIRQAA 68 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh-----------cCCeEEEEEc-cCCHHHHHHHHH
Confidence 557899999999999766554444432 3556777664 344455544433
No 413
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.39 E-value=4.7 Score=42.70 Aligned_cols=40 Identities=13% Similarity=-0.026 Sum_probs=27.4
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEcCCCChHHHHHHHHHHHHH
Q 038133 274 PSPIQMAAIPLGL----QQR---DVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 274 p~~~Q~~ai~~il----~~r---d~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
.+|+|...+..+. +|+ ..++.||.|.||+..+...+-..+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 3577777776655 343 588999999999976655544333
No 414
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=90.26 E-value=0.76 Score=49.07 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=40.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 263 LRAVERVGYKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 263 ~~~i~~~g~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
+..+...|+ +++.+.+.+..+. .+.+++++|+||||||.. +..++..+. ....++++-.+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~-----------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVA-----------PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCC-----------CCCcEEEECCcceec
Confidence 344445555 4566666666555 567899999999999954 343443331 234567777776663
No 415
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.25 E-value=7.2 Score=40.19 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=32.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
.+++.||.|+||+..+-..+- ...-..+-+.+..|+..|..+-.++.
T Consensus 168 giLLyGPPGTGKSYLAKAVAT---------------EAnSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVAT---------------EANSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHh---------------hcCCceEEeehHHHHHHHhccHHHHH
Confidence 599999999999965433331 12256788888888887766655543
No 416
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.24 E-value=0.57 Score=52.56 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHhCC-C-cEEEEcCCCChHHHHHHHHHHHHH
Q 038133 275 SPIQMAAIPLGLQQ-R-DVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 275 ~~~Q~~ai~~il~~-r-d~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
.+-|.+.+..++.. + -++++||||||||... ..++..+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 34445455444432 2 3789999999999653 3344544
No 417
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.19 E-value=0.75 Score=48.49 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
+++.||.|+|||.++...+-...
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999987666554444
No 418
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.18 E-value=1.7 Score=52.86 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=31.4
Q ss_pred CCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCH
Q 038133 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461 (671)
Q Consensus 400 ~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 461 (671)
..--+||||++|.+-+......+..++..++. ...+++.|-+.|+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~-----------------~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPE-----------------NLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCC-----------------CeEEEEEeCCCCC
Confidence 34468999999988655555677777777765 3566677777544
No 419
>PRK05973 replicative DNA helicase; Provisional
Probab=90.16 E-value=0.96 Score=45.61 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=35.2
Q ss_pred hCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
..|.-++|.|++|+|||...+-.+...+. +|..++|+.-- +=..|+.+.+..+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-----------~Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMK-----------SGRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHh-----------cCCeEEEEEEe-CCHHHHHHHHHHc
Confidence 35566889999999999876666655542 47777777543 3345665555544
No 420
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.16 E-value=0.79 Score=49.20 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=18.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhc
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISR 315 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~ 315 (671)
.+++.||.|+|||..+.. +...+..
T Consensus 47 a~L~~G~~G~GKttlA~~-lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFH-LANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 589999999999976544 3444443
No 421
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.14 E-value=0.58 Score=49.34 Aligned_cols=58 Identities=31% Similarity=0.402 Sum_probs=38.6
Q ss_pred CCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 271 YKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 271 ~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
+..+++.|..-+..+. .++++++||+||||||. ++.+++..+- ...+++.+=-|.++.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip-----------~~~rivtIEdt~E~~ 183 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIP-----------PEERIVTIEDTPELK 183 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCC-----------chhcEEEEecccccc
Confidence 4557777766555444 67899999999999995 4555555542 344566666665553
No 422
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.12 E-value=0.91 Score=53.93 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=32.4
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHH
Q 038133 248 RPMRNWAEGKLTPELLRAVERV---GYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 248 ~pi~~f~e~~l~~~i~~~i~~~---g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~l 306 (671)
.|..+|.+.+....+.+.|.+. .+..+.-++.. -+...+.+++.||+|+|||+.+-
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~---g~~~~~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM---GIRPPKGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEECCCCCCHHHHHH
Confidence 4556788877777776666543 11111111110 01123569999999999997643
No 423
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.08 E-value=0.82 Score=51.82 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=16.1
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|++||.|+|||..+.+.+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999998765544
No 424
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.07 E-value=0.073 Score=52.93 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCChHHHH
Q 038133 288 QRDVIGIAETGSGKTAA 304 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~ 304 (671)
++.+++.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 35689999999999964
No 425
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.96 E-value=2.4 Score=49.01 Aligned_cols=20 Identities=30% Similarity=0.125 Sum_probs=16.6
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|++||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999998766544
No 426
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.92 E-value=0.65 Score=51.20 Aligned_cols=39 Identities=31% Similarity=0.411 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHhCCC--cEEEEcCCCChHHHHHHHHHHHHHh
Q 038133 275 SPIQMAAIPLGLQQR--DVIGIAETGSGKTAAFVLPMLTYIS 314 (671)
Q Consensus 275 ~~~Q~~ai~~il~~r--d~ii~a~TGsGKT~~~ll~~l~~l~ 314 (671)
++.|.+.+..+++.. =+++.||||||||.. +..++..+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 566777776666543 378889999999965 555666654
No 427
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.86 E-value=1.1 Score=51.90 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=17.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l 310 (671)
..+|+.||.|+|||.++...+-
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHH
Confidence 3579999999999987655443
No 428
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=4.5 Score=44.84 Aligned_cols=69 Identities=25% Similarity=0.237 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh----C----C----CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCccc
Q 038133 256 GKLTPELLRAVERVGYKNPSPIQMAAIPLGL----Q----Q----RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEEN 323 (671)
Q Consensus 256 ~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il----~----~----rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~ 323 (671)
+|.+++.++.+...|.-.-.|.=.+.+.... + . ..+++.||.|||||..+.-.++.
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~------------ 561 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS------------ 561 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh------------
Confidence 3777777777766665544444444443221 1 1 35899999999999755443322
Q ss_pred ccCCCeEEEEecch
Q 038133 324 EAEGPYAVVMAPTR 337 (671)
Q Consensus 324 ~~~g~~vLil~Ptr 337 (671)
..-|.+=|+.|..
T Consensus 562 -S~FPFvKiiSpe~ 574 (744)
T KOG0741|consen 562 -SDFPFVKIISPED 574 (744)
T ss_pred -cCCCeEEEeChHH
Confidence 3578888888854
No 429
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.70 E-value=1.7 Score=49.16 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=15.7
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
..|++||.|+|||.++...+
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LA 57 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFA 57 (535)
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 35899999999997765544
No 430
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=89.66 E-value=3.3 Score=39.09 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=17.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
.+|+.||.|+||+..+...+-..
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999997665544433
No 431
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.56 E-value=0.25 Score=53.76 Aligned_cols=57 Identities=33% Similarity=0.326 Sum_probs=39.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEEC
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVG 363 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~g 363 (671)
+++++|+||||||.++++|.+.. .+..++|+=|--++....... .+..|..|.++-.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~-------------~~~s~vv~D~Kge~~~~t~~~----r~~~G~~V~v~nP 57 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT-------------WPGSVVVLDPKGENFELTSEH----RRALGRKVFVFDP 57 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc-------------CCCCEEEEccchhHHHHHHHH----HHHcCCeEEEEcC
Confidence 47899999999999998887542 235688888888888654333 2334656655543
No 432
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.50 E-value=3.5 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~ 311 (671)
..++|++||+|+|||..+-..+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999775444433
No 433
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.44 E-value=3.9 Score=45.69 Aligned_cols=99 Identities=25% Similarity=0.274 Sum_probs=74.8
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHH---H
Q 038133 296 ETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQG---F 372 (671)
Q Consensus 296 ~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~ 372 (671)
-++.||+..-++++...+.. +-.|.+||.+-+.+-|.|++.++. ..-++.+.+++|..+..+.. .
T Consensus 365 lvF~gse~~K~lA~rq~v~~---------g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVAS---------GFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred heeeecchhHHHHHHHHHhc---------cCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHH
Confidence 34778888877877777754 357889999999999999888776 33578999999997654433 3
Q ss_pred HHhcC-CeEEEEcchHHHHHHhhcccccCCccEEEEcccch
Q 038133 373 RIRQG-CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412 (671)
Q Consensus 373 ~l~~~-~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~ 412 (671)
.++.| ..++||| +++.+. +.+..+++||-+..-.
T Consensus 433 ~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 433 RFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 34444 7899999 777776 5699999999977653
No 434
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=89.40 E-value=1.6 Score=52.16 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
+..++++||+|+|||..+-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999996543
No 435
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.37 E-value=0.55 Score=46.02 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=16.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
++++||||||||... ..++.++
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 789999999999653 4455554
No 436
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.20 E-value=2.3 Score=46.11 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|+.++++||+|+|||...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred CCCEEEEECCCCCChhHHH
Confidence 5778999999999999653
No 437
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.07 E-value=2 Score=47.44 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=54.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSI 367 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 367 (671)
|.=+++.|++|+|||..++-.+...... .+..++|+.. -.-+.|+...+. +...++....+..+...
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~----------~g~~v~~fSl-Em~~~~l~~Rl~--~~~~~v~~~~~~~~~l~ 260 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALR----------EGKPVLFFSL-EMSAEQLGERLL--ASKSGINTGNIRTGRFN 260 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCcEEEEEC-CCCHHHHHHHHH--HHHcCCCHHHHhcCCCC
Confidence 3347888999999997655555444322 4666777762 223333332222 12233333322222221
Q ss_pred HHHHHHH------hcCCeEEEEcc-----hHHHHHHhhcccccCCccEEEEcccchhh
Q 038133 368 EEQGFRI------RQGCEVVIATP-----GRLIDCLERRYAVLNQCNYVVLDEADRMI 414 (671)
Q Consensus 368 ~~~~~~l------~~~~~IiI~Tp-----~~L~~~l~~~~~~l~~~~~vViDEah~~~ 414 (671)
.+....+ ..+..+.|... ..+...+.+-......+++||||=.|.|.
T Consensus 261 ~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 261 DSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 1111111 12345555433 22222222111112368999999888763
No 438
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.07 E-value=1.3 Score=50.10 Aligned_cols=67 Identities=30% Similarity=0.512 Sum_probs=54.2
Q ss_pred EEEEecChhhHHHHHHHHHHc-----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-----ccccc-CCCCCCcE
Q 038133 517 AIVFVNTKKNADMVAKNLDKL-----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGRG-IDIPDVAH 585 (671)
Q Consensus 517 iIVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-----~~~~G-iDIp~v~~ 585 (671)
+||+++|++-|..+++.+... ++.++.++||++...+... ++.| .+|||||+ .+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999888654 4678999999987766544 4446 99999995 56666 88888988
Q ss_pred EE
Q 038133 586 VI 587 (671)
Q Consensus 586 VI 587 (671)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 88
No 439
>PRK09183 transposase/IS protein; Provisional
Probab=89.01 E-value=0.85 Score=46.77 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=29.0
Q ss_pred HhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 285 GLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 285 il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
+..+.++++.||+|+|||..+...+...+. .|..++++ +..+|..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-----------~G~~v~~~-~~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR-----------AGIKVRFT-TAADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-----------cCCeEEEE-eHHHHHH
Confidence 345778999999999999765544433331 46666665 3344544
No 440
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.91 E-value=4.2 Score=49.13 Aligned_cols=20 Identities=35% Similarity=0.312 Sum_probs=16.5
Q ss_pred CcEEEEcCCCChHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~ 308 (671)
.+.+++||+|+|||.++-..
T Consensus 195 ~n~lL~G~pGvGKT~l~~~l 214 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGL 214 (852)
T ss_pred CceEEEcCCCCCHHHHHHHH
Confidence 57999999999999766443
No 441
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.91 E-value=14 Score=38.82 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=36.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec--chhhHHHHHHHHHHHHhhcCcEEEEE
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP--TRELAQQIEEETVKFAHYLGIKVVSI 361 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P--tr~La~Qi~~~~~k~~~~~~i~v~~~ 361 (671)
-++++|-.|+|||.+..-.+. ++. ..|..+++.+- .|+-|.. .+.-+++..|+.++.-
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~-~l~----------~~g~~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~ 200 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAK-YLK----------QQGKSVLLAAGDTFRAAAIE---QLEVWGERLGVPVISG 200 (340)
T ss_pred EEEEEecCCCchHhHHHHHHH-HHH----------HCCCeEEEEecchHHHHHHH---HHHHHHHHhCCeEEcc
Confidence 478999999999987544433 333 26777777764 3444432 3444445577777663
No 442
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.75 E-value=0.61 Score=50.11 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=17.0
Q ss_pred hCCCcEEEEcCCCChHHHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~~l 306 (671)
|...|+|+.||||||||+.+-
T Consensus 224 LeKSNvLllGPtGsGKTllaq 244 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQ 244 (564)
T ss_pred eecccEEEECCCCCchhHHHH
Confidence 345689999999999997653
No 443
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=88.71 E-value=0.5 Score=50.34 Aligned_cols=19 Identities=21% Similarity=0.032 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
+-+++.||.|+|||+.+-.
T Consensus 149 lgllL~GPPGcGKTllAra 167 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCEL 167 (413)
T ss_pred eEEEeeCCCCCCHHHHHHH
Confidence 3588999999999976433
No 444
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.68 E-value=3.1 Score=41.34 Aligned_cols=45 Identities=18% Similarity=-0.039 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTR 337 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr 337 (671)
|.-+.+.|++|+|||..++..+...+.... -.+....++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~-----~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGE-----LGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccc-----cCCCcceEEEEecCC
Confidence 456899999999999776655544432100 001235677777644
No 445
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=88.49 E-value=0.086 Score=50.30 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=18.1
Q ss_pred CCccEEEEcccchhh--ccCChHHHHHHHH
Q 038133 400 NQCNYVVLDEADRMI--DMGFEPQVVGVLD 427 (671)
Q Consensus 400 ~~~~~vViDEah~~~--~~~f~~~i~~il~ 427 (671)
...+++||||+-.|- ..+|...+..+++
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 578999999999874 3447777777766
No 446
>PRK14701 reverse gyrase; Provisional
Probab=88.39 E-value=1.8 Score=55.39 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=53.8
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~ 573 (671)
.+..+||.+|++.-+..+++.|... ++.+..+||+++..++..+++.+.+|.++|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4668999999999999999888763 467789999999999999999999999999999964
No 447
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=88.35 E-value=0.71 Score=51.45 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=32.1
Q ss_pred EcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCC
Q 038133 383 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430 (671)
Q Consensus 383 ~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~ 430 (671)
-+||-...+-.. .+...+..+.|+|||-.-++.+.+..+..++..+.
T Consensus 571 LS~GEqQRLa~A-RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 571 LSPGEQQRLAFA-RLFYHKPKFAILDECTSAVTEDVEGALYRKCREMG 617 (659)
T ss_pred cCHHHHHHHHHH-HHHhcCCceEEeechhhhccHHHHHHHHHHHHHcC
Confidence 455554333222 23367789999999998888887777777777664
No 448
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=88.23 E-value=14 Score=39.25 Aligned_cols=237 Identities=16% Similarity=0.218 Sum_probs=117.0
Q ss_pred EEEEc--C-CCChHHHHHHHHHHHHHhcCCC---CC--cccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEE
Q 038133 291 VIGIA--E-TGSGKTAAFVLPMLTYISRLPP---IS--EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIV 362 (671)
Q Consensus 291 ~ii~a--~-TGsGKT~~~ll~~l~~l~~~~~---~~--~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~ 362 (671)
+|.+| - =|+|||= +++.+..++..... +- +.........+++.|.. -+.+.=++-.-++..++ +.+++
T Consensus 37 VIsVGNltvGGTGKTP-~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~-~~~~~GDEp~lla~~~~--~~V~V 112 (326)
T PF02606_consen 37 VISVGNLTVGGTGKTP-LVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGS-DAEEVGDEPLLLARKLP--VPVIV 112 (326)
T ss_pred EEEEcccccCCCCchH-HHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCC-ChhhhcCHHHHHHHhcC--CcEEE
Confidence 55554 2 3899993 34555666654311 11 11111111255555555 77777777777887777 55555
Q ss_pred CCCchHHHHHHHhc-CCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchh
Q 038133 363 GGQSIEEQGFRIRQ-GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDE 441 (671)
Q Consensus 363 gg~~~~~~~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~ 441 (671)
|..........+.. +++|||.-.+. +... .-.++++|++|-.+-+.+ ++ .+|...++....
T Consensus 113 ~~dR~~~~~~~~~~~~~dviilDDGf-----Qh~~-L~rDl~Ivl~D~~~~~gn-g~---------lLPaG~LREp~~-- 174 (326)
T PF02606_consen 113 GPDRVAAARAALKEFPADVIILDDGF-----QHRR-LKRDLDIVLVDADRPFGN-GF---------LLPAGPLREPLS-- 174 (326)
T ss_pred eCcHHHHHHHHHHHCCCCEEEEcCCc-----cccc-ccCCcEEEEEeCCCCCcC-Cc---------cCCCCcccCChh--
Confidence 65544444444443 48999887443 3222 257788999998553322 11 122211111000
Q ss_pred hhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEe
Q 038133 442 ELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFV 521 (671)
Q Consensus 442 ~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~ 521 (671)
. ......++++.................|.+........ +...... -.....+.+++.||
T Consensus 175 ~----l~rAD~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--------~~~~~~~--------~~~~l~~~~v~a~s 234 (326)
T PF02606_consen 175 A----LKRADAVIVTGCDASDPAIEKAIRPGKPIFSARLKPEG--------LRNLNTG--------SIEPLKGKPVLAFS 234 (326)
T ss_pred H----hCcccEEEEcCCCcchhHHHHhhhcCCceEEEEEEecc--------ccccccc--------chhhccCCeeEEEE
Confidence 0 00122444443332222211111112222211100000 0000000 01113466776666
Q ss_pred cChhhHHHHHHHHHHcCCeEEE-----ecCCCCHHHHHHHHHHhhcCCCcEEEecc
Q 038133 522 NTKKNADMVAKNLDKLGYRVTT-----LHGGKSQEQREISLEGFRTKRYNVLVATD 572 (671)
Q Consensus 522 ~~~~~~~~l~~~L~~~~~~v~~-----lhg~~~~~~R~~~l~~F~~g~~~VLVaT~ 572 (671)
- +..-+.+.+.|+..|+.+.. =|-..+..+-+.+...++... +||+|.
T Consensus 235 G-Ig~P~~F~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 235 G-IGNPERFFDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred E-cCChHHHHHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecH
Confidence 3 55667788888888876652 266788888888877776655 888883
No 449
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.03 E-value=2.9 Score=50.33 Aligned_cols=24 Identities=33% Similarity=0.225 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~ 311 (671)
..++|++||+|+|||.++-..+..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999876544433
No 450
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.02 E-value=2.4 Score=44.79 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=15.1
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.+|+.||.|+|||..+-+
T Consensus 164 SmIlWGppG~GKTtlArl 181 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARL 181 (554)
T ss_pred ceEEecCCCCchHHHHHH
Confidence 599999999999976543
No 451
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.99 E-value=5.6 Score=38.34 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=15.7
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|+.||.|+|||..+...+
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~ 35 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALA 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999997654433
No 452
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=87.97 E-value=5.9 Score=42.68 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHH
Q 038133 288 QRDVIGIAETGSGKTAA 304 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~ 304 (671)
.+.+.+.|++|.|||..
T Consensus 62 ~~GlYl~G~vG~GKT~L 78 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML 78 (362)
T ss_pred CceEEEECCCCCchhHH
Confidence 46799999999999974
No 453
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=87.96 E-value=0.62 Score=50.80 Aligned_cols=46 Identities=30% Similarity=0.502 Sum_probs=31.7
Q ss_pred hCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 286 LQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
...++++++|.||||||. ++..++..+.. .|.+++|.=|.-+....
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~----------~g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRA----------RGDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHH----------TT-EEEEEEETTHHHHH
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHH----------cCCEEEEEECCchHHHH
Confidence 455789999999999996 55677776654 46777777787666543
No 454
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=87.95 E-value=0.54 Score=53.99 Aligned_cols=57 Identities=28% Similarity=0.247 Sum_probs=42.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEE
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIV 362 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~ 362 (671)
.+++++||||||||..+++|.+-.. +.-++|+=|--|+........ +..|..|.++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------------~~S~VV~DpKGEl~~~Ta~~R----~~~G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------------EDSVVVHDIKLENYELTSGWR----EKQGQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------------CCCEEEEeCcHHHHHHHHHHH----HHCCCeEEEEe
Confidence 4699999999999999999987642 345888899999887554433 33566665554
No 455
>PF05729 NACHT: NACHT domain
Probab=87.95 E-value=8.3 Score=35.68 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=15.2
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
-++|.|+.|+|||....-.+
T Consensus 2 ~l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 47899999999997544333
No 456
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.86 E-value=4.1 Score=49.20 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=16.9
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~ 309 (671)
.++|++||+|+|||.++-..+
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la 220 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLA 220 (857)
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 479999999999997764444
No 457
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.83 E-value=2.4 Score=47.58 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.6
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~ 309 (671)
.|++||.|+|||.++.+.+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999998766544
No 458
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.73 E-value=2.2 Score=49.28 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.0
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|++||.|+|||.++.+.+
T Consensus 41 ayLf~Gp~G~GKtt~A~~lA 60 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFA 60 (614)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47999999999998655544
No 459
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=87.68 E-value=1.7 Score=52.51 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=63.4
Q ss_pred CCCcEEEEecChhhHHHHHHHHH----HcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-cccccCCCCCCcEEE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLD----KLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-VAGRGIDIPDVAHVI 587 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~----~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-~~~~GiDIp~v~~VI 587 (671)
.+.+|.|.|+|.=-|+.=++.++ ...++|..+.-=.+..+...+++...+|.++|+|.|. +++.+|-+.|..+||
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 46789999999665555555544 4477888898889999999999999999999999995 688999999999988
Q ss_pred E
Q 038133 588 N 588 (671)
Q Consensus 588 ~ 588 (671)
.
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 3
No 460
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=87.67 E-value=0.78 Score=46.25 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=23.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
.++++|++|||||. +++-++..+.. .-..+++++|
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~----------~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRH----------KFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhcc----------cCCEEEEEec
Confidence 68999999999994 45555555432 2355666666
No 461
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=87.67 E-value=0.34 Score=48.53 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=12.2
Q ss_pred EEEEcCCCChHHHH
Q 038133 291 VIGIAETGSGKTAA 304 (671)
Q Consensus 291 ~ii~a~TGsGKT~~ 304 (671)
+++.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999974
No 462
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=87.59 E-value=0.58 Score=51.43 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=30.5
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
..++++++|+||||||.. +..++..+.. .+..++|+=|.-++..
T Consensus 41 ~~~h~~i~g~tGsGKt~~-i~~l~~~~~~----------~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQ-IRELLASIRA----------RGDRAIIYDPNGGFVS 84 (410)
T ss_pred hhccEEEEcCCCCCHHHH-HHHHHHHHHh----------cCCCEEEEeCCcchhH
Confidence 456899999999999975 4445555443 3556777777766654
No 463
>PRK09087 hypothetical protein; Validated
Probab=87.47 E-value=2.3 Score=42.67 Aligned_cols=17 Identities=35% Similarity=0.282 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
.-++++||+|||||...
T Consensus 45 ~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999643
No 464
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.45 E-value=4.7 Score=46.11 Aligned_cols=20 Identities=25% Similarity=0.094 Sum_probs=16.2
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|++||.|+|||.++.+.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lA 59 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFA 59 (563)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999998765544
No 465
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=87.34 E-value=2.9 Score=45.35 Aligned_cols=145 Identities=21% Similarity=0.237 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCc
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQS 366 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~ 366 (671)
.+..+++.|+||+||++.+...- .+... ...+|.|-|=|- +++... .. +.-+|+.-...+|...
T Consensus 100 ~~~~vLi~GetGtGKel~A~~iH--~~s~r-------~~~~PFI~~NCa--~~~en~----~~-~eLFG~~kGaftGa~~ 163 (403)
T COG1221 100 SGLPVLIIGETGTGKELFARLIH--ALSAR-------RAEAPFIAFNCA--AYSENL----QE-AELFGHEKGAFTGAQG 163 (403)
T ss_pred CCCcEEEecCCCccHHHHHHHHH--Hhhhc-------ccCCCEEEEEHH--HhCcCH----HH-HHHhccccceeecccC
Confidence 67789999999999998654322 33321 025666555432 222211 11 1135666666666332
Q ss_pred hHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhh
Q 038133 367 IEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446 (671)
Q Consensus 367 ~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~ 446 (671)
.. +|.+ ..-+=+.+.+||+|+|.-.+-+ .+..+++.-. +.+... ..
T Consensus 164 ~k----------------~Glf---------e~A~GGtLfLDEI~~LP~~~Q~-kLl~~le~g~---~~rvG~-----~~ 209 (403)
T COG1221 164 GK----------------AGLF---------EQANGGTLFLDEIHRLPPEGQE-KLLRVLEEGE---YRRVGG-----SQ 209 (403)
T ss_pred Cc----------------Cchh---------eecCCCEEehhhhhhCCHhHHH-HHHHHHHcCc---eEecCC-----CC
Confidence 11 1111 1334578999999998544432 2223333311 111000 01
Q ss_pred hhcceEEEEeccCCHHHHHHHH--HhcC--CCeEEEECC
Q 038133 447 RIYRTTYMFSATMPPAVERLAR--KYLR--NPVVVTIGT 481 (671)
Q Consensus 447 ~~~~q~i~~SAT~~~~~~~l~~--~~l~--~p~~i~i~~ 481 (671)
+....+-+.+||-..-.+.+.. .++. .+..|.+++
T Consensus 210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPp 248 (403)
T COG1221 210 PRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPP 248 (403)
T ss_pred CcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCC
Confidence 1234566778886655555555 3333 344444443
No 466
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.31 E-value=9 Score=42.67 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=17.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~ 311 (671)
.+|+.||.|+|||.++...+-.
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999876554433
No 467
>CHL00176 ftsH cell division protein; Validated
Probab=87.29 E-value=3.8 Score=47.54 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
.+.+++.||+|+|||+.+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999754
No 468
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.07 E-value=0.7 Score=48.71 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=16.5
Q ss_pred hCCCcEEEEcCCCChHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~ 304 (671)
..+.+++++|+||||||..
T Consensus 142 ~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hCCCEEEEECCCCCCHHHH
Confidence 3678999999999999964
No 469
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=3.6 Score=47.56 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=38.7
Q ss_pred HHhhcCcccccCCCCCCCCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCC-cEEEEcCCCChHHHHHHH
Q 038133 233 FREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVER-VGYKNPSPIQMAAIPLGLQQR-DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 233 f~~~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~-~g~~~p~~~Q~~ai~~il~~r-d~ii~a~TGsGKT~~~ll 307 (671)
.+..|.-.+--..||+ -+|++.|=-++....|.+ ++. |-.+. +.+...+..| .+|+-||.|+|||+.+=.
T Consensus 653 ~~~~fs~aiGAPKIPn--V~WdDVGGLeevK~eIldTIql--PL~hp-eLfssglrkRSGILLYGPPGTGKTLlAKA 724 (953)
T KOG0736|consen 653 LQKEFSDAIGAPKIPN--VSWDDVGGLEEVKTEILDTIQL--PLKHP-ELFSSGLRKRSGILLYGPPGTGKTLLAKA 724 (953)
T ss_pred HHHhhhhhcCCCCCCc--cchhcccCHHHHHHHHHHHhcC--cccCh-hhhhccccccceeEEECCCCCchHHHHHH
Confidence 3445544443345655 589997755555444422 222 11111 2344444433 589999999999986533
No 470
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=86.75 E-value=2.6 Score=43.17 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=52.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 369 (671)
-.=++|+.|||||-..+-.++..... ....+.+..++|+.-....-.+ .+..+++.+++ ...
T Consensus 40 itEi~G~~gsGKTql~l~l~~~~~l~-----~~~~g~~~~vvyidTe~~f~~~---Rl~~i~~~~~~---------~~~- 101 (256)
T PF08423_consen 40 ITEIVGESGSGKTQLCLQLAVNVQLP-----EEIGGLGGKVVYIDTEGTFSPE---RLQQIAERFGL---------DPE- 101 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSG-----GCTTSSSSEEEEEESSSSS-HH---HHHHHHHHTTS----------HH-
T ss_pred EEEEEEecccccchHHHHHHHHhhcc-----cccccCCCceEEEeCCCCCCHH---HHHHHhhcccc---------ccc-
Confidence 35688999999996544433333221 0112346788998755544332 22333333321 111
Q ss_pred HHHHHhcCCe-EEEEcchHHHHHHhhcc--cccCCccEEEEcccchhh
Q 038133 370 QGFRIRQGCE-VVIATPGRLIDCLERRY--AVLNQCNYVVLDEADRMI 414 (671)
Q Consensus 370 ~~~~l~~~~~-IiI~Tp~~L~~~l~~~~--~~l~~~~~vViDEah~~~ 414 (671)
.+..... +-+.|...+..++..-. +.-.++++||||-+-.++
T Consensus 102 ---~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf 146 (256)
T PF08423_consen 102 ---EILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF 146 (256)
T ss_dssp ---HHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH
T ss_pred ---hhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH
Confidence 1122222 12334455555554321 123579999999988664
No 471
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.64 E-value=4.5 Score=43.25 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=14.8
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.+|+.||.|+|||..+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI 55 (355)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 579999999999966544
No 472
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.59 E-value=4.2 Score=46.19 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=37.7
Q ss_pred ccCCCCCCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHH
Q 038133 242 KGSKIPRPMRNWAEGKLTPELLRAVERV---GYKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 242 ~g~~ip~pi~~f~e~~l~~~i~~~i~~~---g~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ 305 (671)
+...++.|--+|++.|=-+++...|++. ..+.|-.+.. ..+ .-+.+|+-||.|+|||+++
T Consensus 422 Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r----~Gi~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 422 REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFAR----FGISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHH----hcCCCCceEEEECCCCcchHHHH
Confidence 3444677778899988666666665432 2222222222 222 3478999999999999865
No 473
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.57 E-value=4.8 Score=42.27 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=14.9
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.+++.||+|+|||.++-.
T Consensus 40 ~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALA 57 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 489999999999976433
No 474
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=86.55 E-value=4.4 Score=45.79 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
+.+++.||+|+|||..+
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999754
No 475
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.54 E-value=1.6 Score=50.96 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=16.3
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
..|++||.|+|||.++.+.+
T Consensus 42 AYLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 36899999999998775544
No 476
>PRK04328 hypothetical protein; Provisional
Probab=86.41 E-value=1.7 Score=44.28 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=34.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
|..+++.|++|+|||...+..+...+. .|..++|+. +.+-..++.+.+..+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~-----------~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-----------MGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 456899999999999766665555543 466777776 555556655555554
No 477
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=86.33 E-value=3.1 Score=48.32 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=53.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-----cccc-cCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL-----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGR-GIDIPD 582 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-----~~~~-GiDIp~ 582 (671)
.+.+||.|++++-|..+++.+... ++.++.+||+.+.+.+...+ + +..+|+|+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 567999999999999988877654 68899999998876544433 2 4578999994 3333 467888
Q ss_pred CcEEEE
Q 038133 583 VAHVIN 588 (671)
Q Consensus 583 v~~VI~ 588 (671)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888873
No 478
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=86.27 E-value=4 Score=43.51 Aligned_cols=39 Identities=15% Similarity=-0.048 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEcCCCChHHHHHHHHHHHH
Q 038133 274 PSPIQMAAIPLGL----QQR---DVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 274 p~~~Q~~ai~~il----~~r---d~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
.+|+|..++..+. +++ -.++.||.|+||+..+...+-..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 4677777776654 343 58899999999997665544333
No 479
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.11 E-value=3.7 Score=49.46 Aligned_cols=21 Identities=33% Similarity=0.249 Sum_probs=16.7
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~ 309 (671)
.++|++||.|+|||.++-..+
T Consensus 209 ~n~lLvG~pGvGKTal~~~La 229 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLA 229 (852)
T ss_pred CceeEECCCCCCHHHHHHHHH
Confidence 479999999999997654433
No 480
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=86.04 E-value=5.3 Score=38.82 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=52.3
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-----c-cccCCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----A-GRGIDIPD 582 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-----~-~~GiDIp~ 582 (671)
.++++||.|++..-+...+..+... +..+..++|+.+.......+. +..+|+|+|.- + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 3567999999999888887776555 678889999988765443332 67889999942 2 22356778
Q ss_pred CcEEEEc
Q 038133 583 VAHVINY 589 (671)
Q Consensus 583 v~~VI~~ 589 (671)
+.++|.-
T Consensus 144 l~~lIvD 150 (203)
T cd00268 144 VKYLVLD 150 (203)
T ss_pred CCEEEEe
Confidence 8888743
No 481
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=86.00 E-value=4.5 Score=37.28 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=23.8
Q ss_pred cCCccEEEEcccchhhccCChHHHHHHHHhC
Q 038133 399 LNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429 (671)
Q Consensus 399 l~~~~~vViDEah~~~~~~f~~~i~~il~~l 429 (671)
..+..++++||--.-+|......+..++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 5677899999999877777666776666654
No 482
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=85.98 E-value=0.98 Score=43.48 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=24.0
Q ss_pred cCCccEEEEcccchhhccCChHHHHHHHHhC
Q 038133 399 LNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429 (671)
Q Consensus 399 l~~~~~vViDEah~~~~~~f~~~i~~il~~l 429 (671)
+.+..++++||...-+|......+..++..+
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~ 144 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEM 144 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 3577999999999988877776666666654
No 483
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.95 E-value=1.2 Score=53.87 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=72.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCc-EEEecccccccCCCCCCcEEEEcCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN-VLVATDVAGRGIDIPDVAHVINYDMP 592 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~-VLVaT~~~~~GiDIp~v~~VI~~d~p 592 (671)
.+++|||+.-....+.+...+.-.++......++. .-...+..|++ ++ .|+-+...+.|+|+-++.+|+..++-
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 57899999888888888777765555443333322 23446666765 55 45677888999999999999999999
Q ss_pred CCHHHHHHHhcccCCCCCcc
Q 038133 593 GNIEMYTHRIGRTGRAGKTG 612 (671)
Q Consensus 593 ~s~~~y~QriGR~gR~G~~g 612 (671)
.++..-.|.+||+.|.|++-
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred cCchHHHhhhhhhhhccccc
Confidence 99999999999999999763
No 484
>PRK06904 replicative DNA helicase; Validated
Probab=85.89 E-value=12 Score=41.95 Aligned_cols=111 Identities=18% Similarity=0.093 Sum_probs=53.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECC--CchH
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGG--QSIE 368 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg--~~~~ 368 (671)
+|+.|.+|.|||..++-.+...... .|..++|+..- --..|+...+... ..++....+..| .+..
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~----------~g~~Vl~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMA----------SEKPVLVFSLE-MPAEQIMMRMLAS--LSRVDQTKIRTGQNLDQQ 290 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh----------cCCeEEEEecc-CCHHHHHHHHHHh--hCCCCHHHhccCCCCCHH
Confidence 6777899999997554444333321 35667776542 3344444333322 223333222222 2322
Q ss_pred HHH------HHHhcCCeEEEE-----cchHHHHHHhhcccccCCccEEEEcccchhh
Q 038133 369 EQG------FRIRQGCEVVIA-----TPGRLIDCLERRYAVLNQCNYVVLDEADRMI 414 (671)
Q Consensus 369 ~~~------~~l~~~~~IiI~-----Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~ 414 (671)
+.. ..+.....+.|- |+..+...+.+.......+++||||=.+.|.
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 221 122223445553 3333333222211112358999999888664
No 485
>PF14516 AAA_35: AAA-like domain
Probab=85.80 E-value=8 Score=41.18 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=64.9
Q ss_pred CcHHHHHHHHHHhC-CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchh----h--HHHHHHH
Q 038133 274 PSPIQMAAIPLGLQ-QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE----L--AQQIEEE 346 (671)
Q Consensus 274 p~~~Q~~ai~~il~-~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~----L--a~Qi~~~ 346 (671)
-.|...+++..+.+ |.-+.|.||-.+|||.. +.-++..+.. .|..++++--... + ..++..+
T Consensus 16 R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~----------~~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 16 RPPAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ----------QGYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred chHHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH----------CCCEEEEEEeecCCCcccCCHHHHHHH
Confidence 33588889988887 88899999999999965 4445555543 4555555433221 0 1222222
Q ss_pred -HHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc-ccCCccEEEEcccchhhcc
Q 038133 347 -TVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA-VLNQCNYVVLDEADRMIDM 416 (671)
Q Consensus 347 -~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~-~l~~~~~vViDEah~~~~~ 416 (671)
+..+...+++.. ...+.+. -.++.+..+..+++...+ ....-=+++|||+|.+++.
T Consensus 85 ~~~~i~~~L~l~~-------~l~~~w~-------~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~ 142 (331)
T PF14516_consen 85 FCEEISRQLKLDE-------KLDEYWD-------EEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY 142 (331)
T ss_pred HHHHHHHHcCCCh-------hHHHHHH-------HhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccC
Confidence 233334444331 1111111 123355555555544322 1223347999999999874
No 486
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=85.67 E-value=14 Score=41.96 Aligned_cols=119 Identities=15% Similarity=0.207 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh-hcCcEEEEEECCCc
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH-YLGIKVVSIVGGQS 366 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~-~~~i~v~~~~gg~~ 366 (671)
.+-.+..-|---|||+ |+.|++..++. .-.|-.+.|++.-+-.++-+..++...+. +++-+.+.-.
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~--------s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~---- 268 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLK--------NIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN---- 268 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHH--------hhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee----
Confidence 3456666788999996 56677776654 23688999999999888877766654433 2332211111
Q ss_pred hHHHHHHHhcCCeEEEEcchHH-----HHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCC
Q 038133 367 IEEQGFRIRQGCEVVIATPGRL-----IDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432 (671)
Q Consensus 367 ~~~~~~~l~~~~~IiI~Tp~~L-----~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~ 432 (671)
++--|.+.-|+.= ..+.+.+..--.++++++|||||-+- ...+..|+..|...
T Consensus 269 ---------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~ 326 (668)
T PHA03372 269 ---------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQN 326 (668)
T ss_pred ---------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhccc
Confidence 1123444333221 22334444456789999999999652 23344555555443
No 487
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=85.52 E-value=0.96 Score=52.58 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=38.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEE
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSI 361 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~ 361 (671)
.+++++||||||||..+++|-+-.. ..-++|+=|--++...... +.+..|..|..+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------------~gS~VV~DpKGE~~~~Ta~----~R~~~G~~V~~F 195 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------------KGSVIALDVKGELFELTSR----ARKASGDAVFKF 195 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------------CCCEEEEeCCchHHHHHHH----HHHhCCCEEEEe
Confidence 4799999999999999999985532 2357888888888764333 223355555543
No 488
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=85.44 E-value=1.5 Score=51.76 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=55.5
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 270 GYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 270 g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
++...+|-|-+||-...+...+.++||+|+|||-.++-.+...... ...++++|++.+..--+|..+.+.+
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn---------~p~qrTlivthsnqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHN---------SPNQRTLIVTHSNQALNQLFEKIMA 805 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhc---------CCCcceEEEEecccchhHHHHHHHh
Confidence 3445689999999999999999999999999997765544332222 3578899999998888887776655
Q ss_pred H
Q 038133 350 F 350 (671)
Q Consensus 350 ~ 350 (671)
+
T Consensus 806 ~ 806 (1320)
T KOG1806|consen 806 L 806 (1320)
T ss_pred c
Confidence 4
No 489
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=85.28 E-value=4.4 Score=43.85 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=18.4
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
.|+..+++||.|+|||..+ .-+...+
T Consensus 168 kGQR~lIvgppGvGKTTLa-K~Ian~I 193 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL-QNIANSI 193 (416)
T ss_pred cCceEEEeCCCCCChhHHH-HHHHHHH
Confidence 5677999999999999643 3344443
No 490
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=85.16 E-value=8.3 Score=40.78 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=27.7
Q ss_pred CCcHHHHHHHHHHh----CCC---cEEEEcCCCChHHHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGL----QQR---DVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~~r---d~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
.++|+|...+..+. +++ ..++.||.|.||+..+...+-..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~l 49 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRAL 49 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 45677777776655 343 58999999999997655544333
No 491
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=85.13 E-value=1.1 Score=46.09 Aligned_cols=28 Identities=21% Similarity=0.075 Sum_probs=22.0
Q ss_pred HHHHHHhCCCcEEEEcCCCChHHHHHHH
Q 038133 280 AAIPLGLQQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 280 ~ai~~il~~rd~ii~a~TGsGKT~~~ll 307 (671)
+++..+..++++++.||+|+|||.++..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 3445566789999999999999976544
No 492
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=85.06 E-value=11 Score=42.57 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=33.6
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHHHHH
Q 038133 243 GSKIPRPMRNWAEGKLTPELLRAVERV---GYKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 243 g~~ip~pi~~f~e~~l~~~i~~~i~~~---g~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ll~~ 309 (671)
+.....|.-.|.+.+--......+.+. .+..|.-++. ..+ ..+.+|+.||.|+|||+.+-..+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~----~~~~~~~giLl~GpPGtGKT~lAkava 297 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRK----LGLRPPKGVLLYGPPGTGKTLLAKAVA 297 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHh----cCCCCCCeeEEECCCCCCHHHHHHHHH
Confidence 444566777787755333333333221 1212211111 112 23469999999999998765554
No 493
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=85.02 E-value=3.5 Score=48.32 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.+++-|.+|+... ...++|.|..|||||.+..--+...+.. . .-....+|+++=|+-.|.++.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~-~------~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAA-G------GVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHc-C------CcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4678888888776 5579999999999998765555444432 1 11234589999999999877777666543
No 494
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=84.92 E-value=4.2 Score=40.67 Aligned_cols=24 Identities=29% Similarity=0.104 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~ 311 (671)
|.-+.++|++|+|||..++..++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 445899999999999766555443
No 495
>PRK05439 pantothenate kinase; Provisional
Probab=84.87 E-value=6.2 Score=41.48 Aligned_cols=19 Identities=16% Similarity=0.482 Sum_probs=14.4
Q ss_pred hhhccCHHHHHHHHhhcCc
Q 038133 221 KLEEMTERDWRIFREDFNI 239 (671)
Q Consensus 221 ~~~~~~~~~~~~f~~~~~i 239 (671)
.....+-++|..|+.+.+.
T Consensus 9 ~~~~~~r~~w~~l~~~~~~ 27 (311)
T PRK05439 9 PYLEFSREQWAALRDSTPL 27 (311)
T ss_pred CceeECHHHHHHHHhcCCC
Confidence 3456788899999987665
No 496
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.65 E-value=7.4 Score=39.38 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=33.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHHHH
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ll~ 308 (671)
-+|.+.|-..++++.|+++- ..|--+....+.... -.+.+++-||.|+|||+++-..
T Consensus 174 vty~dvggckeqieklrevv-e~pll~perfv~lgidppkgvllygppgtgktl~arav 231 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVV-ELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAV 231 (435)
T ss_pred cccccccchHHHHHHHHHHH-hccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHH
Confidence 34556666677777766541 112222222333333 2367999999999999986443
No 497
>PRK07413 hypothetical protein; Validated
Probab=84.62 E-value=64 Score=34.92 Aligned_cols=245 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCC------eEEEEecchh-hHHHHHHHHHHHHhhc---CcEEEE
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP------YAVVMAPTRE-LAQQIEEETVKFAHYL---GIKVVS 360 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~------~vLil~Ptr~-La~Qi~~~~~k~~~~~---~i~v~~ 360 (671)
+.+--..|=|||.+++--++..+ +.|. +|+|+.=.+. -...=+..+.+.+... ++.+..
T Consensus 22 i~VytG~GKGKTTAAlGlalRA~-----------G~G~~~~~~~rV~ivQFlKg~~~~~GE~~~l~~l~~~~~~~i~~~~ 90 (382)
T PRK07413 22 LHVYDGEGKGKSQAALGVVLRTI-----------GLGICEKRQTRVLLLRFLKGPGRAYDEDAAIEALQRGFPHLIDQVR 90 (382)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHh-----------cCCCCcCCCCeEEEEEEEcCCCCCCcHHHHHHhccccCCCceEEEE
Q ss_pred EECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC--ChHHHHHHHHhCCCCCCCCCC
Q 038133 361 IVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG--FEPQVVGVLDAMPSSNLKPEN 438 (671)
Q Consensus 361 ~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~--f~~~i~~il~~l~~~~~~~~~ 438 (671)
.-.+...... .....-.......+........ -..+++||+||+-..++.+ -...+..++..-|.
T Consensus 91 ~g~~~~~~~~-----~~~~~~~~~a~~~~~~a~~~i~-sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~------- 157 (382)
T PRK07413 91 TGRAEFFGAD-----EITKFDRQEAQRGWDIAKGAIA-SGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPE------- 157 (382)
T ss_pred CCCCCeeeCC-----CCcHHHHHHHHHHHHHHHHHHh-CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCC-------
Q ss_pred chhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEe----ccchhHHHHHHHHHHhCC
Q 038133 439 EDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM----KESEKFSRLQRLLDELGD 514 (671)
Q Consensus 439 ~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~----~~~~k~~~L~~ll~~~~~ 514 (671)
...+|+.--.+|+.+..++...---..+-.....+........-.+.+ .......++-..++..+.
T Consensus 158 ----------~~evVLTGR~ap~~Lie~ADlVTEm~~iKHp~~~~~~~~~~~~g~i~VYTG~GKGKTTAAlGlAlRA~G~ 227 (382)
T PRK07413 158 ----------GLEIIITGRAAPQSLLDIADLHSEMRPHRRPTASELGVPFNSSGGIEIYTGEGKGKSTSALGKALQAIGR 227 (382)
T ss_pred ----------CCEEEEeCCCCCHHHHHhCCeeEEeceecCCCcCCCCcccCCCCeEEEEeCCCCCchHHHHHHHHHHhcC
Q ss_pred C-------cEEEEecChhh----HHHHHHHHHHcCCe-EEEecCCCC----------------HHHHHHHHHHhhcCCCc
Q 038133 515 K-------TAIVFVNTKKN----ADMVAKNLDKLGYR-VTTLHGGKS----------------QEQREISLEGFRTKRYN 566 (671)
Q Consensus 515 ~-------~iIVF~~~~~~----~~~l~~~L~~~~~~-v~~lhg~~~----------------~~~R~~~l~~F~~g~~~ 566 (671)
+ +++|+---+.. -....+.|....-. +..+..+.+ ...-+.+.+.+.+|.++
T Consensus 228 G~~~~~~~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~a~~~i~~g~yd 307 (382)
T PRK07413 228 GISQDKSHRVLILQWLKGGSGYTEDAAIAALRESYPHLVDHLRSGRDAIVWRGQQQPIDYVEAERAWEIARAAIASGLYK 307 (382)
T ss_pred CCCcccCceEEEEEECCCCCChHHHHHHHHhhhhCCCcEEEEEccCCCceeecCChHHHHHHHHHHHHHHHHHHhCCCCC
Q ss_pred EEE
Q 038133 567 VLV 569 (671)
Q Consensus 567 VLV 569 (671)
+||
T Consensus 308 lvV 310 (382)
T PRK07413 308 TII 310 (382)
T ss_pred EEE
No 498
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=84.60 E-value=24 Score=37.60 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=11.9
Q ss_pred cEEEEcCCCChHHH
Q 038133 290 DVIGIAETGSGKTA 303 (671)
Q Consensus 290 d~ii~a~TGsGKT~ 303 (671)
-+-+.|+.|+|||.
T Consensus 58 ~igi~G~~GaGKST 71 (332)
T PRK09435 58 RIGITGVPGVGKST 71 (332)
T ss_pred EEEEECCCCCCHHH
Confidence 37788999999995
No 499
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.56 E-value=2.8 Score=50.47 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.4
Q ss_pred EEEEcCCCChHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVL 307 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll 307 (671)
++++||||+|||..+-.
T Consensus 599 ~lf~Gp~GvGKT~lA~~ 615 (852)
T TIGR03345 599 FLLVGPSGVGKTETALA 615 (852)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999976543
No 500
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.50 E-value=1.7 Score=52.18 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=15.5
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.++++||||+|||..+-..+
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA 560 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALA 560 (821)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 37899999999997654433
Done!