Query 038133
Match_columns 671
No_of_seqs 470 out of 3530
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 13:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.5E-65 5E-70 565.3 49.8 392 236-646 41-433 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1E-60 3.6E-65 522.9 47.1 404 239-655 3-417 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 3.3E-58 1.1E-62 502.4 38.9 377 243-644 29-406 (410)
4 3eiq_A Eukaryotic initiation f 100.0 1.2E-56 4E-61 490.1 35.7 380 243-647 32-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 1.3E-55 4.3E-60 480.2 40.6 373 248-646 18-390 (400)
6 1xti_A Probable ATP-dependent 100.0 1.8E-54 6.3E-59 469.1 40.2 370 251-645 8-382 (391)
7 1fuu_A Yeast initiation factor 100.0 7.6E-56 2.6E-60 480.2 24.0 378 244-647 14-392 (394)
8 3fht_A ATP-dependent RNA helic 100.0 1.2E-53 4E-58 465.9 40.2 367 247-641 21-400 (412)
9 1hv8_A Putative ATP-dependent 100.0 4.7E-53 1.6E-57 453.3 43.0 358 251-640 6-364 (367)
10 3pey_A ATP-dependent RNA helic 100.0 1.5E-53 5.3E-58 461.6 38.7 358 248-634 2-370 (395)
11 3fmp_B ATP-dependent RNA helic 100.0 4.2E-55 1.4E-59 488.2 20.0 375 239-641 77-467 (479)
12 3sqw_A ATP-dependent RNA helic 100.0 1.3E-52 4.6E-57 478.6 39.6 364 257-634 27-411 (579)
13 3i5x_A ATP-dependent RNA helic 100.0 2E-52 6.9E-57 475.8 39.0 364 257-634 78-462 (563)
14 2z0m_A 337AA long hypothetical 100.0 1.3E-50 4.3E-55 429.4 38.5 335 258-634 1-335 (337)
15 3fho_A ATP-dependent RNA helic 100.0 2.5E-51 8.5E-56 460.5 20.0 390 225-643 92-493 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 8.2E-49 2.8E-53 445.3 35.5 343 247-627 15-380 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 2.8E-48 9.5E-53 436.3 36.1 338 250-628 1-350 (523)
18 3oiy_A Reverse gyrase helicase 100.0 3.2E-48 1.1E-52 424.4 29.4 332 262-634 10-376 (414)
19 1tf5_A Preprotein translocase 100.0 6.9E-47 2.3E-51 430.5 36.1 374 219-623 33-547 (844)
20 2fsf_A Preprotein translocase 100.0 3.9E-45 1.3E-49 414.9 30.2 378 219-624 24-586 (853)
21 2va8_A SSO2462, SKI2-type heli 100.0 1.5E-44 5E-49 422.3 35.3 336 251-622 8-409 (715)
22 2zj8_A DNA helicase, putative 100.0 4.5E-45 1.5E-49 426.8 29.9 365 252-657 2-427 (720)
23 3l9o_A ATP-dependent RNA helic 100.0 3.2E-45 1.1E-49 440.9 28.1 347 251-640 162-614 (1108)
24 4a2p_A RIG-I, retinoic acid in 100.0 2.2E-45 7.6E-50 416.3 24.1 333 270-624 4-511 (556)
25 3tbk_A RIG-I helicase domain; 100.0 1.8E-44 6E-49 408.4 29.2 337 273-629 4-515 (555)
26 2p6r_A Afuhel308 helicase; pro 100.0 4.5E-45 1.5E-49 425.5 23.2 338 252-622 2-389 (702)
27 2ykg_A Probable ATP-dependent 100.0 4.7E-45 1.6E-49 425.5 19.9 346 263-629 3-524 (696)
28 1nkt_A Preprotein translocase 100.0 1.2E-43 4.2E-48 402.8 30.2 336 268-623 107-619 (922)
29 4ddu_A Reverse gyrase; topoiso 100.0 1.3E-43 4.6E-48 426.6 30.6 328 268-634 74-503 (1104)
30 4a2q_A RIG-I, retinoic acid in 100.0 1.6E-43 5.4E-48 417.8 29.3 336 268-624 243-752 (797)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 3.1E-44 1.1E-48 432.3 21.8 335 264-635 48-468 (1054)
32 2xgj_A ATP-dependent RNA helic 100.0 2.8E-42 9.5E-47 411.9 37.6 312 268-621 82-499 (1010)
33 2eyq_A TRCF, transcription-rep 100.0 2.4E-42 8.2E-47 418.2 34.9 321 258-622 588-923 (1151)
34 1wp9_A ATP-dependent RNA helic 100.0 3.3E-42 1.1E-46 381.8 32.6 321 273-624 9-478 (494)
35 4a2w_A RIG-I, retinoic acid in 100.0 3.3E-42 1.1E-46 411.3 26.4 335 268-623 243-751 (936)
36 1gm5_A RECG; helicase, replica 100.0 5.9E-42 2E-46 397.3 25.5 323 260-626 356-702 (780)
37 4gl2_A Interferon-induced heli 100.0 2.4E-42 8.2E-47 402.8 19.1 334 273-620 7-517 (699)
38 4a4z_A Antiviral helicase SKI2 100.0 1.4E-40 4.8E-45 397.2 33.1 309 269-619 36-490 (997)
39 4f92_B U5 small nuclear ribonu 100.0 1.2E-40 4.2E-45 414.1 28.3 379 257-660 910-1347(1724)
40 4f92_B U5 small nuclear ribonu 100.0 2E-40 6.8E-45 412.2 29.5 375 270-660 76-512 (1724)
41 2oca_A DAR protein, ATP-depend 100.0 9.3E-41 3.2E-45 375.2 17.4 310 272-619 112-453 (510)
42 3fe2_A Probable ATP-dependent 100.0 4.9E-39 1.7E-43 325.8 28.2 239 224-482 2-240 (242)
43 2whx_A Serine protease/ntpase/ 100.0 1.5E-41 5.1E-46 387.0 9.7 326 256-644 155-504 (618)
44 2jlq_A Serine protease subunit 100.0 1.2E-40 3.9E-45 368.1 16.5 312 270-644 1-337 (451)
45 1yks_A Genome polyprotein [con 100.0 1E-40 3.4E-45 367.2 7.8 290 284-643 4-324 (440)
46 2fwr_A DNA repair protein RAD2 100.0 2.6E-39 9E-44 359.8 18.5 293 273-622 93-455 (472)
47 2xau_A PRE-mRNA-splicing facto 100.0 2.2E-39 7.5E-44 378.0 16.2 336 247-622 68-444 (773)
48 2wv9_A Flavivirin protease NS2 100.0 2.6E-40 8.7E-45 379.2 6.7 316 265-642 202-557 (673)
49 3o8b_A HCV NS3 protease/helica 100.0 1.6E-38 5.6E-43 359.2 14.9 290 273-634 217-531 (666)
50 2z83_A Helicase/nucleoside tri 100.0 4.9E-38 1.7E-42 347.7 12.3 281 282-629 15-323 (459)
51 1wrb_A DJVLGB; RNA helicase, D 100.0 3.3E-36 1.1E-40 306.9 22.9 244 236-492 6-252 (253)
52 2v6i_A RNA helicase; membrane, 100.0 2.5E-36 8.7E-41 331.4 21.2 270 287-618 1-288 (431)
53 3iuy_A Probable ATP-dependent 100.0 2E-35 6.9E-40 296.2 23.0 218 242-479 10-228 (228)
54 3h1t_A Type I site-specific re 100.0 8.9E-36 3.1E-40 340.6 22.6 305 272-610 177-545 (590)
55 3jux_A Protein translocase sub 100.0 3E-34 1E-38 319.3 33.2 335 269-623 72-589 (822)
56 3dkp_A Probable ATP-dependent 100.0 2.5E-35 8.5E-40 298.9 21.7 230 230-482 4-243 (245)
57 3dmq_A RNA polymerase-associat 100.0 3.1E-35 1.1E-39 351.7 23.8 336 272-636 152-628 (968)
58 3bor_A Human initiation factor 100.0 6.4E-35 2.2E-39 294.6 22.2 215 241-480 20-235 (237)
59 3ber_A Probable ATP-dependent 100.0 2.2E-34 7.6E-39 292.8 24.8 208 248-480 40-248 (249)
60 3rc3_A ATP-dependent RNA helic 100.0 2.1E-34 7.1E-39 329.3 27.3 295 259-619 130-443 (677)
61 3fmo_B ATP-dependent RNA helic 100.0 1.8E-34 6E-39 301.5 23.4 215 238-480 76-298 (300)
62 2pl3_A Probable ATP-dependent 100.0 1E-33 3.5E-38 285.3 26.4 228 227-481 6-234 (236)
63 2oxc_A Probable ATP-dependent 100.0 4.2E-34 1.4E-38 287.2 23.2 211 243-479 16-228 (230)
64 1qde_A EIF4A, translation init 100.0 6.5E-34 2.2E-38 284.2 23.6 214 243-482 6-219 (224)
65 1vec_A ATP-dependent RNA helic 100.0 1.1E-33 3.9E-38 278.6 24.9 202 251-477 3-205 (206)
66 1q0u_A Bstdead; DEAD protein, 100.0 3.5E-34 1.2E-38 285.5 21.2 209 249-482 2-214 (219)
67 1z63_A Helicase of the SNF2/RA 100.0 2.5E-33 8.6E-38 313.9 30.2 320 273-636 37-466 (500)
68 2gxq_A Heat resistant RNA depe 100.0 7E-33 2.4E-37 273.0 24.9 205 252-480 2-206 (207)
69 1t6n_A Probable ATP-dependent 100.0 5.7E-33 2E-37 276.7 22.3 212 242-478 5-219 (220)
70 3ly5_A ATP-dependent RNA helic 100.0 7.1E-33 2.4E-37 283.9 23.2 203 252-475 53-258 (262)
71 1z3i_X Similar to RAD54-like; 100.0 1.8E-30 6.2E-35 298.6 33.6 321 273-621 55-528 (644)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.5E-31 8.5E-36 315.9 25.9 323 259-619 250-707 (1038)
73 2ipc_A Preprotein translocase 100.0 8.7E-30 3E-34 288.3 35.8 333 269-622 76-699 (997)
74 3mwy_W Chromo domain-containin 100.0 6.1E-31 2.1E-35 309.9 25.7 367 216-621 181-684 (800)
75 2p6n_A ATP-dependent RNA helic 100.0 4.4E-29 1.5E-33 243.0 19.7 180 468-648 9-189 (191)
76 1c4o_A DNA nucleotide excision 100.0 9.5E-27 3.3E-31 267.6 33.0 175 449-632 380-561 (664)
77 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.5E-27 5.2E-32 231.0 19.0 167 484-650 15-182 (185)
78 2d7d_A Uvrabc system protein B 99.9 1E-25 3.4E-30 259.0 32.4 174 449-631 386-566 (661)
79 2hjv_A ATP-dependent RNA helic 99.9 1.3E-26 4.3E-31 219.9 19.6 152 485-636 6-157 (163)
80 1fuk_A Eukaryotic initiation f 99.9 6.1E-27 2.1E-31 222.5 15.2 159 488-646 3-162 (165)
81 1t5i_A C_terminal domain of A 99.9 1E-26 3.5E-31 222.5 15.8 160 487-646 4-164 (172)
82 2rb4_A ATP-dependent RNA helic 99.9 3.9E-26 1.3E-30 219.2 17.2 155 486-640 5-166 (175)
83 3eaq_A Heat resistant RNA depe 99.9 1.9E-25 6.3E-30 221.2 18.0 148 489-636 6-153 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.3E-24 4.5E-29 225.6 17.7 148 489-636 3-150 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 6.8E-26 2.3E-30 216.4 0.0 149 488-636 3-152 (170)
86 2vl7_A XPD; helicase, unknown 99.9 5.4E-23 1.8E-27 231.6 17.7 315 269-619 4-519 (540)
87 3b6e_A Interferon-induced heli 99.9 2.9E-23 9.8E-28 205.1 11.8 149 269-423 29-184 (216)
88 3crv_A XPD/RAD3 related DNA he 99.9 6.5E-21 2.2E-25 215.3 28.1 322 270-620 1-530 (551)
89 3llm_A ATP-dependent RNA helic 99.9 4E-21 1.4E-25 193.2 16.1 178 264-475 52-232 (235)
90 1rif_A DAR protein, DNA helica 99.8 2.4E-21 8.2E-26 200.2 11.1 155 273-464 113-267 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 5.7E-19 2E-23 201.2 24.4 326 273-618 3-581 (620)
92 1z5z_A Helicase of the SNF2/RA 99.8 1E-18 3.5E-23 179.0 12.5 126 496-621 92-224 (271)
93 2fz4_A DNA repair protein RAD2 99.8 4.3E-18 1.5E-22 171.2 16.8 139 272-462 92-231 (237)
94 1w36_D RECD, exodeoxyribonucle 98.8 6.3E-09 2.2E-13 118.3 9.8 135 275-431 151-288 (608)
95 4b3f_X DNA-binding protein smu 98.3 4E-06 1.4E-10 96.1 13.1 66 273-349 189-255 (646)
96 3hgt_A HDA1 complex subunit 3; 98.2 1.1E-05 3.7E-10 83.0 12.9 155 497-659 106-277 (328)
97 2gk6_A Regulator of nonsense t 98.1 1.4E-05 4.8E-10 91.1 13.9 69 271-349 178-246 (624)
98 2xzl_A ATP-dependent helicase 98.0 2.6E-05 9.1E-10 91.0 13.1 69 271-349 358-426 (802)
99 3e1s_A Exodeoxyribonuclease V, 98.0 4.1E-05 1.4E-09 86.1 13.1 62 273-345 189-250 (574)
100 2wjy_A Regulator of nonsense t 98.0 3.6E-05 1.2E-09 89.8 12.9 69 271-349 354-422 (800)
101 3upu_A ATP-dependent DNA helic 97.9 4.9E-05 1.7E-09 83.3 11.7 66 269-345 21-92 (459)
102 3lfu_A DNA helicase II; SF1 he 97.7 0.0016 5.5E-08 74.3 21.8 71 272-351 8-78 (647)
103 2o0j_A Terminase, DNA packagin 97.4 0.0021 7.3E-08 68.1 14.6 119 273-415 163-287 (385)
104 3cpe_A Terminase, DNA packagin 96.7 0.0061 2.1E-07 68.8 11.8 120 273-415 163-287 (592)
105 2orw_A Thymidine kinase; TMTK, 96.4 0.0056 1.9E-07 58.0 7.3 39 288-337 3-41 (184)
106 3ec2_A DNA replication protein 96.4 0.015 5.2E-07 54.4 10.2 21 287-307 37-57 (180)
107 1xx6_A Thymidine kinase; NESG, 96.3 0.0064 2.2E-07 58.0 7.0 39 288-337 8-46 (191)
108 1pjr_A PCRA; DNA repair, DNA r 96.2 0.014 4.6E-07 67.6 10.4 71 272-351 10-80 (724)
109 2orv_A Thymidine kinase; TP4A 96.2 0.022 7.4E-07 55.6 10.1 40 288-338 19-58 (234)
110 2b8t_A Thymidine kinase; deoxy 96.2 0.0049 1.7E-07 60.3 5.5 90 288-413 12-101 (223)
111 1uaa_A REP helicase, protein ( 96.1 0.007 2.4E-07 69.4 7.6 69 273-350 2-70 (673)
112 2kjq_A DNAA-related protein; s 96.1 0.0045 1.5E-07 56.5 4.5 19 287-305 35-53 (149)
113 2j9r_A Thymidine kinase; TK1, 96.0 0.0069 2.4E-07 58.5 5.5 37 290-337 30-66 (214)
114 3vkw_A Replicase large subunit 95.9 0.014 4.8E-07 62.7 7.9 84 290-413 163-246 (446)
115 3e2i_A Thymidine kinase; Zn-bi 95.8 0.013 4.5E-07 56.5 6.6 39 288-337 28-66 (219)
116 3te6_A Regulatory protein SIR3 95.6 0.097 3.3E-06 53.9 12.8 26 287-313 44-69 (318)
117 1d2n_A N-ethylmaleimide-sensit 95.4 0.17 5.8E-06 50.5 13.5 19 289-307 65-83 (272)
118 1g5t_A COB(I)alamin adenosyltr 95.4 0.13 4.6E-06 48.7 11.8 141 289-467 29-171 (196)
119 3kl4_A SRP54, signal recogniti 95.3 0.087 3E-06 56.6 11.6 132 289-471 98-235 (433)
120 2zpa_A Uncharacterized protein 95.3 0.043 1.5E-06 61.9 9.3 91 273-413 175-267 (671)
121 1l8q_A Chromosomal replication 95.3 0.041 1.4E-06 56.7 8.7 19 288-306 37-55 (324)
122 1w4r_A Thymidine kinase; type 94.9 0.064 2.2E-06 50.9 8.0 38 288-336 20-57 (195)
123 3h4m_A Proteasome-activating n 94.8 0.032 1.1E-06 56.2 6.2 54 249-305 12-68 (285)
124 2z4s_A Chromosomal replication 94.7 0.098 3.4E-06 56.6 9.8 20 288-307 130-149 (440)
125 2w58_A DNAI, primosome compone 94.6 0.11 3.9E-06 49.2 9.2 18 289-306 55-72 (202)
126 3dm5_A SRP54, signal recogniti 94.6 0.29 9.9E-06 52.6 13.1 57 290-360 102-160 (443)
127 2v1u_A Cell division control p 94.5 0.099 3.4E-06 54.7 9.3 19 288-306 44-62 (387)
128 1jbk_A CLPB protein; beta barr 94.4 0.17 5.8E-06 46.7 9.8 19 288-306 43-61 (195)
129 3u4q_A ATP-dependent helicase/ 94.3 0.068 2.3E-06 65.5 8.4 72 273-351 10-81 (1232)
130 1gm5_A RECG; helicase, replica 94.0 0.18 6.3E-06 58.3 10.7 77 514-590 417-498 (780)
131 3u61_B DNA polymerase accessor 93.9 0.24 8.2E-06 50.8 10.6 15 400-414 104-118 (324)
132 3bos_A Putative DNA replicatio 93.9 0.068 2.3E-06 51.8 6.1 20 287-306 51-70 (242)
133 2qby_B CDC6 homolog 3, cell di 93.7 0.21 7.1E-06 52.4 9.8 19 288-306 45-63 (384)
134 2p65_A Hypothetical protein PF 93.6 0.25 8.5E-06 45.5 9.2 20 288-307 43-62 (187)
135 1fnn_A CDC6P, cell division co 93.6 0.16 5.4E-06 53.3 8.7 16 290-305 46-61 (389)
136 2chg_A Replication factor C sm 93.5 0.6 2.1E-05 44.0 12.0 18 289-306 39-56 (226)
137 3eie_A Vacuolar protein sortin 93.4 0.38 1.3E-05 49.4 11.0 52 249-306 13-69 (322)
138 2qby_A CDC6 homolog 1, cell di 93.1 0.27 9.3E-06 51.2 9.5 19 288-306 45-63 (386)
139 3pfi_A Holliday junction ATP-d 92.8 0.18 6.3E-06 52.0 7.6 18 289-306 56-73 (338)
140 4b4t_J 26S protease regulatory 92.7 0.19 6.4E-06 53.3 7.4 53 249-305 143-199 (405)
141 1a5t_A Delta prime, HOLB; zinc 92.7 0.13 4.6E-06 53.2 6.2 36 274-309 3-45 (334)
142 4b4t_M 26S protease regulatory 92.7 0.064 2.2E-06 57.6 3.8 56 247-305 174-232 (434)
143 3oiy_A Reverse gyrase helicase 92.6 0.26 9.1E-06 52.3 8.6 78 513-590 63-147 (414)
144 3syl_A Protein CBBX; photosynt 92.5 0.15 5.3E-06 51.7 6.3 19 289-307 68-86 (309)
145 1xwi_A SKD1 protein; VPS4B, AA 92.2 0.49 1.7E-05 48.7 9.8 52 249-306 7-63 (322)
146 3d8b_A Fidgetin-like protein 1 92.2 0.39 1.3E-05 50.2 9.0 54 250-306 80-135 (357)
147 3pvs_A Replication-associated 92.1 0.28 9.4E-06 53.1 8.0 18 289-306 51-68 (447)
148 3vfd_A Spastin; ATPase, microt 92.0 0.27 9.4E-06 52.0 7.8 19 288-306 148-166 (389)
149 1sxj_E Activator 1 40 kDa subu 91.9 0.54 1.8E-05 48.7 9.8 31 399-430 132-162 (354)
150 1sxj_A Activator 1 95 kDa subu 91.8 0.53 1.8E-05 51.9 10.1 19 289-307 78-96 (516)
151 4b4t_K 26S protease regulatory 91.8 0.24 8.3E-06 53.0 7.0 54 249-305 167-223 (428)
152 2w0m_A SSO2452; RECA, SSPF, un 91.7 0.62 2.1E-05 44.6 9.4 23 287-309 22-44 (235)
153 2qp9_X Vacuolar protein sortin 91.7 0.64 2.2E-05 48.5 10.0 19 288-306 84-102 (355)
154 4b4t_L 26S protease subunit RP 91.6 0.1 3.5E-06 56.1 3.8 55 248-306 175-233 (437)
155 2zan_A Vacuolar protein sortin 91.2 0.79 2.7E-05 49.4 10.5 55 249-306 129-185 (444)
156 2r6a_A DNAB helicase, replicat 91.1 0.61 2.1E-05 50.4 9.5 39 288-336 203-241 (454)
157 3b9p_A CG5977-PA, isoform A; A 91.1 0.26 8.9E-06 49.8 6.1 18 288-305 54-71 (297)
158 2p6n_A ATP-dependent RNA helic 90.6 1.6 5.5E-05 41.0 10.8 72 327-408 54-129 (191)
159 4b4t_H 26S protease regulatory 90.5 0.2 7E-06 53.9 4.8 53 249-305 204-260 (467)
160 1hqc_A RUVB; extended AAA-ATPa 90.4 0.29 1E-05 49.9 5.8 19 288-306 38-56 (324)
161 1cr0_A DNA primase/helicase; R 90.2 2.2 7.5E-05 42.9 12.1 24 287-310 34-57 (296)
162 2q6t_A DNAB replication FORK h 89.8 0.97 3.3E-05 48.7 9.6 113 288-415 200-324 (444)
163 2hjv_A ATP-dependent RNA helic 89.7 1.7 5.7E-05 39.5 9.8 74 326-409 34-111 (163)
164 4b4t_I 26S protease regulatory 89.6 0.17 5.7E-06 54.0 3.2 54 248-305 176-233 (437)
165 2z43_A DNA repair and recombin 89.5 1.4 4.9E-05 45.1 10.2 55 288-347 107-162 (324)
166 3hjh_A Transcription-repair-co 89.1 1.4 4.7E-05 48.0 10.0 76 502-590 371-446 (483)
167 1jr3_A DNA polymerase III subu 88.6 1.8 6.1E-05 44.8 10.4 18 290-307 40-57 (373)
168 2cvh_A DNA repair and recombin 88.5 1.2 4E-05 42.4 8.2 22 288-309 20-41 (220)
169 1fuk_A Eukaryotic initiation f 88.5 2.2 7.4E-05 38.8 9.7 74 326-409 29-106 (165)
170 2eyq_A TRCF, transcription-rep 88.5 1.3 4.5E-05 53.6 10.3 76 513-588 651-731 (1151)
171 4ddu_A Reverse gyrase; topoiso 88.4 0.64 2.2E-05 56.1 7.5 78 513-590 120-204 (1104)
172 2zr9_A Protein RECA, recombina 88.4 0.84 2.9E-05 47.5 7.5 39 288-337 61-99 (349)
173 1vma_A Cell division protein F 88.3 2.5 8.6E-05 43.0 10.9 21 289-309 105-125 (306)
174 4a1f_A DNAB helicase, replicat 88.0 0.83 2.8E-05 47.3 7.1 48 288-347 46-93 (338)
175 1n0w_A DNA repair protein RAD5 87.9 1.8 6.2E-05 41.7 9.3 24 287-310 23-46 (243)
176 2ehv_A Hypothetical protein PH 87.9 1.5 5.2E-05 42.5 8.7 23 287-309 29-51 (251)
177 3bh0_A DNAB-like replicative h 87.8 1.3 4.6E-05 45.2 8.5 50 288-349 68-117 (315)
178 2zts_A Putative uncharacterize 87.8 0.5 1.7E-05 45.9 5.1 50 288-348 30-79 (251)
179 2ffh_A Protein (FFH); SRP54, s 87.4 3.4 0.00012 44.0 11.6 87 288-388 98-192 (425)
180 1nlf_A Regulatory protein REPA 87.3 2.5 8.6E-05 42.1 10.2 25 286-310 28-52 (279)
181 3jvv_A Twitching mobility prot 87.2 0.9 3.1E-05 47.4 6.9 25 288-313 123-147 (356)
182 1ls1_A Signal recognition part 87.0 7.2 0.00025 39.3 13.4 22 288-309 98-119 (295)
183 3ber_A Probable ATP-dependent 87.0 3.2 0.00011 40.6 10.5 71 514-588 111-192 (249)
184 1t6n_A Probable ATP-dependent 86.9 2 6.9E-05 40.8 8.8 73 514-589 82-165 (220)
185 3hr8_A Protein RECA; alpha and 86.7 1.1 3.6E-05 46.8 7.1 42 288-340 61-102 (356)
186 1u94_A RECA protein, recombina 86.7 1.2 4E-05 46.5 7.4 41 288-339 63-103 (356)
187 2gno_A DNA polymerase III, gam 86.7 2.4 8.1E-05 43.1 9.6 19 290-308 20-38 (305)
188 3eaq_A Heat resistant RNA depe 86.7 2.7 9.4E-05 40.0 9.6 72 326-407 30-105 (212)
189 1iqp_A RFCS; clamp loader, ext 86.5 1.4 4.6E-05 44.7 7.8 17 290-306 48-64 (327)
190 1w5s_A Origin recognition comp 86.5 1.7 5.9E-05 45.6 8.8 18 289-306 51-70 (412)
191 3hu3_A Transitional endoplasmi 86.3 0.98 3.4E-05 49.3 6.8 18 288-305 238-255 (489)
192 3e70_C DPA, signal recognition 86.3 8.3 0.00028 39.5 13.5 18 288-305 129-146 (328)
193 3n70_A Transport activator; si 86.3 0.56 1.9E-05 41.9 4.1 20 286-305 22-41 (145)
194 3co5_A Putative two-component 86.1 0.53 1.8E-05 42.0 3.9 21 285-305 24-44 (143)
195 1t5i_A C_terminal domain of A 86.0 1.9 6.7E-05 39.5 7.8 74 326-409 30-107 (172)
196 3cmu_A Protein RECA, recombina 86.0 1.3 4.3E-05 56.2 8.2 43 288-341 1427-1469(2050)
197 2xxa_A Signal recognition part 85.9 4.5 0.00015 43.2 11.7 85 290-388 102-195 (433)
198 1p9r_A General secretion pathw 85.8 0.75 2.6E-05 49.1 5.4 25 288-313 167-191 (418)
199 2rb4_A ATP-dependent RNA helic 85.7 2.2 7.6E-05 39.1 8.1 72 326-407 33-108 (175)
200 1xp8_A RECA protein, recombina 85.6 1.1 3.9E-05 46.8 6.6 41 288-339 74-114 (366)
201 2fna_A Conserved hypothetical 85.4 27 0.00092 35.1 17.2 17 289-305 31-47 (357)
202 2px0_A Flagellar biosynthesis 85.3 1.2 4.1E-05 45.2 6.5 24 287-310 104-127 (296)
203 1e9r_A Conjugal transfer prote 84.9 0.86 3E-05 48.8 5.5 43 288-341 53-95 (437)
204 3fe2_A Probable ATP-dependent 84.7 3.4 0.00012 40.0 9.3 72 514-589 102-183 (242)
205 2jgn_A DBX, DDX3, ATP-dependen 84.6 1.6 5.4E-05 40.8 6.5 72 326-407 45-120 (185)
206 3cf2_A TER ATPase, transitiona 84.0 1 3.4E-05 52.2 5.7 61 242-305 465-528 (806)
207 2i1q_A DNA repair and recombin 83.8 2.7 9.2E-05 42.9 8.5 24 288-311 98-121 (322)
208 3io5_A Recombination and repai 83.8 2.2 7.4E-05 43.7 7.4 90 290-414 30-124 (333)
209 1oyw_A RECQ helicase, ATP-depe 83.8 2 6.7E-05 47.3 7.8 74 514-587 65-144 (523)
210 2v1x_A ATP-dependent DNA helic 83.7 1.9 6.6E-05 48.2 7.9 59 514-572 84-144 (591)
211 2qgz_A Helicase loader, putati 83.6 1.7 5.6E-05 44.4 6.7 22 288-309 152-173 (308)
212 2eyu_A Twitching motility prot 83.5 0.74 2.5E-05 45.8 3.9 20 286-305 23-42 (261)
213 1v5w_A DMC1, meiotic recombina 83.3 2.9 0.0001 43.2 8.5 46 288-338 122-167 (343)
214 2dr3_A UPF0273 protein PH0284; 83.0 1.7 5.9E-05 41.9 6.4 49 287-347 22-70 (247)
215 3i5x_A ATP-dependent RNA helic 82.9 7.8 0.00027 42.6 12.5 77 326-409 338-418 (563)
216 2oxc_A Probable ATP-dependent 82.7 2.7 9.1E-05 40.4 7.5 70 514-588 92-172 (230)
217 4ag6_A VIRB4 ATPase, type IV s 82.6 1.5 5E-05 46.3 6.0 58 287-363 34-91 (392)
218 3lda_A DNA repair protein RAD5 82.3 5.3 0.00018 42.2 10.2 45 288-337 178-222 (400)
219 2pl3_A Probable ATP-dependent 81.4 3.4 0.00012 39.7 7.7 71 513-588 96-177 (236)
220 1wrb_A DJVLGB; RNA helicase, D 80.8 12 0.00041 36.2 11.6 71 514-588 100-180 (253)
221 2gxq_A Heat resistant RNA depe 80.8 5.1 0.00017 37.3 8.6 71 514-588 72-150 (207)
222 3sqw_A ATP-dependent RNA helic 80.5 11 0.00037 41.8 12.5 78 326-410 287-368 (579)
223 1vec_A ATP-dependent RNA helic 80.5 4.9 0.00017 37.5 8.3 71 514-588 71-152 (206)
224 3bor_A Human initiation factor 80.4 3 0.0001 40.3 7.0 72 514-588 98-179 (237)
225 3iuy_A Probable ATP-dependent 80.3 4 0.00014 39.0 7.8 72 513-588 93-173 (228)
226 3i32_A Heat resistant RNA depe 80.0 7 0.00024 39.5 9.8 72 326-407 27-102 (300)
227 1wp9_A ATP-dependent RNA helic 79.2 6.1 0.00021 41.8 9.6 76 326-411 360-447 (494)
228 2i4i_A ATP-dependent RNA helic 79.0 6.2 0.00021 41.2 9.5 72 326-407 275-350 (417)
229 1xti_A Probable ATP-dependent 78.8 6.7 0.00023 40.5 9.6 72 514-588 76-158 (391)
230 3pxi_A Negative regulator of g 78.8 1.3 4.4E-05 51.3 4.2 18 290-307 523-540 (758)
231 3fht_A ATP-dependent RNA helic 78.5 8.3 0.00028 40.1 10.2 72 326-407 265-340 (412)
232 2j37_W Signal recognition part 78.2 14 0.00048 40.2 12.0 35 290-335 103-137 (504)
233 3cf0_A Transitional endoplasmi 77.3 0.93 3.2E-05 46.0 2.2 58 248-306 9-67 (301)
234 3ly5_A ATP-dependent RNA helic 77.1 12 0.0004 36.7 10.2 71 514-588 126-207 (262)
235 2oap_1 GSPE-2, type II secreti 76.2 2.4 8.3E-05 46.4 5.3 37 266-304 239-276 (511)
236 3a8t_A Adenylate isopentenyltr 75.8 1.4 4.8E-05 45.4 3.0 21 289-309 41-61 (339)
237 3cf2_A TER ATPase, transitiona 75.5 5.3 0.00018 46.1 8.0 17 289-305 239-255 (806)
238 1kgd_A CASK, peripheral plasma 75.2 1.7 5.8E-05 40.2 3.3 19 287-305 4-22 (180)
239 1u0j_A DNA replication protein 74.9 5.4 0.00018 39.6 6.9 44 261-307 74-123 (267)
240 1hv8_A Putative ATP-dependent 74.5 7.4 0.00025 39.6 8.3 74 326-409 237-314 (367)
241 4akg_A Glutathione S-transfera 74.3 3.8 0.00013 53.6 7.0 49 258-307 890-942 (2695)
242 3b85_A Phosphate starvation-in 74.2 2.8 9.7E-05 39.9 4.6 32 274-305 8-39 (208)
243 1ofh_A ATP-dependent HSL prote 74.2 6.4 0.00022 39.3 7.6 20 287-306 49-68 (310)
244 2bjv_A PSP operon transcriptio 74.1 2.1 7.1E-05 42.2 3.8 19 287-305 28-46 (265)
245 1qde_A EIF4A, translation init 73.9 4.1 0.00014 38.7 5.7 70 514-588 82-161 (224)
246 3exa_A TRNA delta(2)-isopenten 73.7 1.7 5.9E-05 44.3 3.0 20 290-309 5-24 (322)
247 3foz_A TRNA delta(2)-isopenten 73.7 1.7 5.9E-05 44.2 3.0 20 290-309 12-31 (316)
248 3trf_A Shikimate kinase, SK; a 73.0 2.1 7E-05 39.5 3.2 20 288-307 5-24 (185)
249 3vaa_A Shikimate kinase, SK; s 72.9 2.1 7.3E-05 40.2 3.3 21 287-307 24-44 (199)
250 2qmh_A HPR kinase/phosphorylas 72.5 1.7 5.9E-05 41.2 2.5 20 288-307 34-53 (205)
251 1lv7_A FTSH; alpha/beta domain 72.5 5.9 0.0002 38.6 6.6 18 288-305 45-62 (257)
252 1j8m_F SRP54, signal recogniti 72.4 7.8 0.00027 39.1 7.7 21 289-309 99-119 (297)
253 3tau_A Guanylate kinase, GMP k 71.9 2.3 7.9E-05 40.3 3.3 19 287-305 7-25 (208)
254 1qhx_A CPT, protein (chloramph 71.7 1.9 6.3E-05 39.5 2.6 18 288-305 3-20 (178)
255 3lw7_A Adenylate kinase relate 71.6 1.7 6E-05 39.1 2.3 17 290-306 3-19 (179)
256 3uk6_A RUVB-like 2; hexameric 71.6 2.8 9.5E-05 43.4 4.2 20 288-307 70-89 (368)
257 2d7d_A Uvrabc system protein B 71.5 22 0.00076 40.1 12.0 78 326-413 444-525 (661)
258 3hws_A ATP-dependent CLP prote 71.5 6.7 0.00023 40.6 7.1 21 287-307 50-70 (363)
259 2r44_A Uncharacterized protein 71.1 2.7 9.2E-05 42.9 3.9 22 284-305 42-63 (331)
260 2yjt_D ATP-dependent RNA helic 73.7 0.85 2.9E-05 41.9 0.0 72 326-407 29-104 (170)
261 3nbx_X ATPase RAVA; AAA+ ATPas 71.0 2.3 7.8E-05 46.5 3.4 27 279-305 32-58 (500)
262 2ze6_A Isopentenyl transferase 70.9 2.2 7.6E-05 42.0 3.1 18 290-307 3-20 (253)
263 4a2p_A RIG-I, retinoic acid in 70.7 7.7 0.00026 42.3 7.8 71 514-588 55-136 (556)
264 1gku_B Reverse gyrase, TOP-RG; 70.6 6.7 0.00023 47.0 7.7 75 513-589 98-182 (1054)
265 2db3_A ATP-dependent RNA helic 70.6 13 0.00045 39.4 9.4 69 329-407 302-374 (434)
266 3cmw_A Protein RECA, recombina 70.4 5 0.00017 50.1 6.6 90 288-414 1431-1522(1706)
267 2gza_A Type IV secretion syste 70.4 2.7 9.2E-05 43.8 3.7 19 286-304 173-191 (361)
268 1ixz_A ATP-dependent metallopr 70.3 1.8 6.1E-05 42.4 2.2 55 248-305 10-66 (254)
269 1lvg_A Guanylate kinase, GMP k 70.2 2.6 9E-05 39.6 3.3 19 287-305 3-21 (198)
270 3tbk_A RIG-I helicase domain; 69.7 5.6 0.00019 43.3 6.3 71 514-588 52-133 (555)
271 3iij_A Coilin-interacting nucl 69.7 2 7E-05 39.4 2.4 21 287-307 10-30 (180)
272 3pey_A ATP-dependent RNA helic 69.7 8 0.00027 39.8 7.3 76 326-411 242-321 (395)
273 2qor_A Guanylate kinase; phosp 69.2 2.7 9.1E-05 39.6 3.1 21 285-305 9-29 (204)
274 2r8r_A Sensor protein; KDPD, P 69.0 5 0.00017 38.8 4.9 24 290-313 8-31 (228)
275 1q0u_A Bstdead; DEAD protein, 68.4 3.8 0.00013 38.8 4.1 71 514-588 72-156 (219)
276 3crm_A TRNA delta(2)-isopenten 68.4 2.6 9E-05 43.1 3.0 19 290-308 7-25 (323)
277 2qz4_A Paraplegin; AAA+, SPG7, 68.0 3 0.0001 40.7 3.3 19 288-306 39-57 (262)
278 1ex7_A Guanylate kinase; subst 68.0 2.7 9.1E-05 39.4 2.8 16 289-304 2-17 (186)
279 1y63_A LMAJ004144AAA protein; 67.6 2.6 8.8E-05 39.0 2.6 18 288-305 10-27 (184)
280 1c4o_A DNA nucleotide excision 67.5 18 0.00061 40.9 10.0 78 326-413 438-519 (664)
281 3ney_A 55 kDa erythrocyte memb 67.3 3.4 0.00012 39.0 3.4 19 287-305 18-36 (197)
282 2j41_A Guanylate kinase; GMP, 67.3 3.1 0.00011 38.9 3.2 19 287-305 5-23 (207)
283 3u4q_B ATP-dependent helicase/ 67.2 4.4 0.00015 49.2 5.2 32 515-546 343-375 (1166)
284 3tr0_A Guanylate kinase, GMP k 67.0 3.4 0.00012 38.6 3.3 19 287-305 6-24 (205)
285 2x8a_A Nuclear valosin-contain 66.9 1.3 4.6E-05 44.2 0.5 54 249-305 5-61 (274)
286 1zp6_A Hypothetical protein AT 66.8 2.9 9.8E-05 38.7 2.7 19 287-305 8-26 (191)
287 2xau_A PRE-mRNA-splicing facto 66.7 26 0.00089 40.3 11.3 76 326-407 302-393 (773)
288 2j0s_A ATP-dependent RNA helic 66.7 24 0.00082 36.6 10.4 72 326-407 275-350 (410)
289 2pt7_A CAG-ALFA; ATPase, prote 66.7 2.6 8.9E-05 43.3 2.6 19 286-304 169-187 (330)
290 1fuu_A Yeast initiation factor 66.7 13 0.00045 38.2 8.2 71 513-588 88-168 (394)
291 3d3q_A TRNA delta(2)-isopenten 66.5 3 0.0001 43.0 3.0 19 290-308 9-27 (340)
292 1kag_A SKI, shikimate kinase I 66.2 3.8 0.00013 37.1 3.4 18 288-305 4-21 (173)
293 1tf7_A KAIC; homohexamer, hexa 66.2 26 0.00088 38.2 10.8 47 287-345 280-326 (525)
294 1ojl_A Transcriptional regulat 66.1 4.1 0.00014 41.3 3.9 19 287-305 24-42 (304)
295 1ly1_A Polynucleotide kinase; 66.0 2.7 9.2E-05 38.2 2.4 16 290-305 4-19 (181)
296 3a00_A Guanylate kinase, GMP k 65.7 3.8 0.00013 38.0 3.3 17 289-305 2-18 (186)
297 1kht_A Adenylate kinase; phosp 65.7 2.9 9.9E-05 38.5 2.5 19 288-306 3-21 (192)
298 3kb2_A SPBC2 prophage-derived 65.4 2.7 9.3E-05 37.9 2.3 17 290-306 3-19 (173)
299 1tue_A Replication protein E1; 65.4 7 0.00024 37.2 5.1 43 261-305 29-75 (212)
300 1s2m_A Putative ATP-dependent 65.3 15 0.00051 38.0 8.4 73 326-408 257-333 (400)
301 1iy2_A ATP-dependent metallopr 65.3 2.5 8.7E-05 42.0 2.2 54 249-305 35-90 (278)
302 3eph_A TRNA isopentenyltransfe 65.2 3.7 0.00013 43.3 3.5 20 290-309 4-23 (409)
303 1xjc_A MOBB protein homolog; s 65.1 6.6 0.00023 36.1 4.8 23 290-313 6-28 (169)
304 3nwn_A Kinesin-like protein KI 64.3 4.7 0.00016 41.9 4.0 25 281-305 96-122 (359)
305 4etp_A Kinesin-like protein KA 64.3 4.7 0.00016 42.6 4.1 25 281-305 132-158 (403)
306 3fmo_B ATP-dependent RNA helic 64.1 7.5 0.00026 39.1 5.5 69 514-589 162-242 (300)
307 1bg2_A Kinesin; motor protein, 64.0 4.9 0.00017 41.2 4.0 25 281-305 69-95 (325)
308 3gk5_A Uncharacterized rhodane 63.8 7.1 0.00024 32.6 4.4 43 507-549 47-90 (108)
309 4gp7_A Metallophosphoesterase; 63.7 2.9 0.0001 38.2 2.1 19 287-305 8-26 (171)
310 3bgw_A DNAB-like replicative h 63.4 6.6 0.00023 42.1 5.1 37 288-335 197-233 (444)
311 3t15_A Ribulose bisphosphate c 63.2 3.8 0.00013 41.2 3.0 18 289-306 37-54 (293)
312 1v8k_A Kinesin-like protein KI 63.1 5 0.00017 42.4 4.0 25 281-305 146-172 (410)
313 4fcw_A Chaperone protein CLPB; 63.0 6.9 0.00023 39.2 5.0 17 290-306 49-65 (311)
314 2ewv_A Twitching motility prot 62.9 3.5 0.00012 43.2 2.7 19 286-304 134-152 (372)
315 1knq_A Gluconate kinase; ALFA/ 62.8 3 0.0001 38.0 2.0 18 288-305 8-25 (175)
316 1z6g_A Guanylate kinase; struc 62.6 4.8 0.00016 38.4 3.5 19 287-305 22-40 (218)
317 2ius_A DNA translocase FTSK; n 62.5 10 0.00035 41.3 6.4 26 288-313 167-192 (512)
318 3dc4_A Kinesin-like protein NO 62.4 4.7 0.00016 41.6 3.6 25 281-305 86-112 (344)
319 1qvr_A CLPB protein; coiled co 62.0 88 0.003 36.3 14.9 21 289-309 192-212 (854)
320 4eun_A Thermoresistant glucoki 62.0 4.8 0.00016 37.7 3.3 19 287-305 28-46 (200)
321 2vvg_A Kinesin-2; motor protei 62.0 5.6 0.00019 41.2 4.0 25 281-305 81-107 (350)
322 3t0q_A AGR253WP; kinesin, alph 61.8 4.9 0.00017 41.6 3.6 25 281-305 77-103 (349)
323 2y65_A Kinesin, kinesin heavy 61.8 5.6 0.00019 41.4 4.0 25 281-305 76-102 (365)
324 1um8_A ATP-dependent CLP prote 61.8 4.7 0.00016 42.0 3.6 19 288-306 72-90 (376)
325 3b6u_A Kinesin-like protein KI 61.8 5.5 0.00019 41.6 4.0 25 281-305 93-119 (372)
326 1t5c_A CENP-E protein, centrom 61.6 5.6 0.00019 41.2 4.0 25 281-305 69-95 (349)
327 2h58_A Kinesin-like protein KI 61.6 5.7 0.0002 40.7 4.0 25 281-305 72-98 (330)
328 1goj_A Kinesin, kinesin heavy 61.5 5.6 0.00019 41.3 4.0 25 281-305 72-98 (355)
329 3gbj_A KIF13B protein; kinesin 61.5 5.7 0.0002 41.2 4.0 25 281-305 84-110 (354)
330 3ice_A Transcription terminati 61.4 53 0.0018 34.4 11.2 33 274-306 157-192 (422)
331 1njg_A DNA polymerase III subu 61.4 6.1 0.00021 37.3 4.1 17 290-306 47-63 (250)
332 4a14_A Kinesin, kinesin-like p 61.3 5.8 0.0002 41.0 4.0 25 281-305 75-101 (344)
333 4dzz_A Plasmid partitioning pr 61.3 17 0.00058 33.6 7.1 31 378-411 55-85 (206)
334 3cm0_A Adenylate kinase; ATP-b 61.2 3.7 0.00013 37.7 2.3 20 288-307 4-23 (186)
335 3lre_A Kinesin-like protein KI 61.1 5.8 0.0002 41.1 4.0 25 281-305 97-123 (355)
336 1x88_A Kinesin-like protein KI 61.0 5.6 0.00019 41.3 3.9 25 281-305 80-106 (359)
337 2nr8_A Kinesin-like protein KI 60.9 5.9 0.0002 41.2 4.0 25 281-305 95-121 (358)
338 1zu4_A FTSY; GTPase, signal re 60.9 7.7 0.00026 39.6 4.9 22 288-309 105-126 (320)
339 3dkp_A Probable ATP-dependent 60.8 4.3 0.00015 39.2 2.9 73 514-589 98-182 (245)
340 2zfi_A Kinesin-like protein KI 60.8 6 0.0002 41.3 4.0 25 281-305 81-107 (366)
341 2r2a_A Uncharacterized protein 60.7 5.4 0.00018 37.7 3.4 22 290-311 7-28 (199)
342 1znw_A Guanylate kinase, GMP k 60.7 5.2 0.00018 37.7 3.3 22 284-305 16-37 (207)
343 2c9o_A RUVB-like 1; hexameric 60.5 4.6 0.00016 43.5 3.2 20 288-307 63-82 (456)
344 3cob_A Kinesin heavy chain-lik 60.4 5.2 0.00018 41.7 3.5 25 281-305 71-97 (369)
345 3nwj_A ATSK2; P loop, shikimat 60.4 5.7 0.0002 39.0 3.7 22 286-307 46-67 (250)
346 1m7g_A Adenylylsulfate kinase; 60.3 5.9 0.0002 37.4 3.7 30 276-306 14-43 (211)
347 2yvu_A Probable adenylyl-sulfa 60.3 9.1 0.00031 35.1 4.9 20 288-307 13-32 (186)
348 1f9v_A Kinesin-like protein KA 60.2 4.7 0.00016 41.7 3.1 25 281-305 76-102 (347)
349 1c9k_A COBU, adenosylcobinamid 60.2 14 0.00047 34.3 6.0 34 291-339 2-35 (180)
350 3u06_A Protein claret segregat 60.1 5.6 0.00019 42.2 3.7 25 281-305 130-156 (412)
351 1tf5_A Preprotein translocase 59.9 21 0.00072 41.1 8.6 72 510-587 120-208 (844)
352 4a2q_A RIG-I, retinoic acid in 59.8 16 0.00055 42.2 8.0 71 514-588 296-377 (797)
353 1rj9_A FTSY, signal recognitio 59.5 9.6 0.00033 38.5 5.3 19 288-306 102-120 (304)
354 2v6i_A RNA helicase; membrane, 59.4 11 0.00039 40.0 6.1 53 327-384 171-224 (431)
355 3eme_A Rhodanese-like domain p 59.3 6.6 0.00022 32.4 3.4 37 513-549 55-91 (103)
356 2heh_A KIF2C protein; kinesin, 59.2 6.3 0.00022 41.3 3.9 26 281-306 126-153 (387)
357 1f2t_A RAD50 ABC-ATPase; DNA d 59.2 6.6 0.00023 35.0 3.6 15 291-305 26-40 (149)
358 2rhm_A Putative kinase; P-loop 59.1 4.1 0.00014 37.5 2.3 18 289-306 6-23 (193)
359 2fsf_A Preprotein translocase 58.8 20 0.00067 41.4 8.1 79 503-587 103-199 (853)
360 2c95_A Adenylate kinase 1; tra 58.7 6.8 0.00023 36.1 3.8 21 287-307 8-28 (196)
361 3foj_A Uncharacterized protein 58.7 7.1 0.00024 32.0 3.5 37 513-549 55-91 (100)
362 3g5j_A Putative ATP/GTP bindin 58.6 9.7 0.00033 32.7 4.5 38 513-550 87-126 (134)
363 2wbe_C Bipolar kinesin KRP-130 58.5 6 0.00021 41.3 3.6 25 281-305 92-118 (373)
364 3uie_A Adenylyl-sulfate kinase 58.3 5.1 0.00018 37.5 2.8 20 287-306 24-43 (200)
365 3vkg_A Dynein heavy chain, cyt 58.2 14 0.00049 49.0 7.7 49 258-307 873-925 (3245)
366 1s96_A Guanylate kinase, GMP k 58.2 6.1 0.00021 37.9 3.3 19 286-304 14-32 (219)
367 3t61_A Gluconokinase; PSI-biol 58.2 5.4 0.00019 37.2 3.0 18 289-306 19-36 (202)
368 1sxj_D Activator 1 41 kDa subu 58.2 7.8 0.00027 39.5 4.5 18 289-306 59-76 (353)
369 2z0m_A 337AA long hypothetical 58.1 21 0.00073 35.6 7.8 70 514-588 56-135 (337)
370 2l82_A Designed protein OR32; 58.0 39 0.0013 28.0 7.5 52 517-568 5-56 (162)
371 3kta_A Chromosome segregation 58.0 6 0.0002 36.1 3.2 16 290-305 28-43 (182)
372 2r62_A Cell division protease 57.9 3 0.0001 41.0 1.1 19 288-306 44-62 (268)
373 1tev_A UMP-CMP kinase; ploop, 57.8 4.6 0.00016 37.1 2.4 18 289-306 4-21 (196)
374 3b9q_A Chloroplast SRP recepto 57.8 9.5 0.00033 38.5 4.9 19 288-306 100-118 (302)
375 3bfn_A Kinesin-like protein KI 57.6 5.8 0.0002 41.6 3.3 24 282-305 91-116 (388)
376 1via_A Shikimate kinase; struc 57.4 6.4 0.00022 35.7 3.3 18 290-307 6-23 (175)
377 2bdt_A BH3686; alpha-beta prot 57.4 5.8 0.0002 36.5 3.0 16 290-305 4-19 (189)
378 1nij_A Hypothetical protein YJ 57.2 7.2 0.00025 39.7 3.9 14 291-304 7-20 (318)
379 2v54_A DTMP kinase, thymidylat 57.2 4.6 0.00016 37.6 2.3 19 287-305 3-21 (204)
380 1np6_A Molybdopterin-guanine d 57.2 11 0.00037 34.7 4.8 15 290-304 8-22 (174)
381 2wv9_A Flavivirin protease NS2 56.9 13 0.00044 42.2 6.2 69 326-406 409-478 (673)
382 1wv9_A Rhodanese homolog TT165 56.9 9 0.00031 30.9 3.7 35 515-549 54-88 (94)
383 2ykg_A Probable ATP-dependent 56.8 15 0.00052 41.4 7.0 70 515-588 62-142 (696)
384 1w36_B RECB, exodeoxyribonucle 56.7 17 0.00058 44.1 7.7 62 290-351 18-80 (1180)
385 1nks_A Adenylate kinase; therm 56.7 4.8 0.00016 36.9 2.3 18 290-307 3-20 (194)
386 1zuh_A Shikimate kinase; alpha 56.5 6.5 0.00022 35.4 3.1 19 289-307 8-26 (168)
387 1gvn_B Zeta; postsegregational 56.1 4.4 0.00015 40.7 2.0 16 290-305 35-50 (287)
388 1e6c_A Shikimate kinase; phosp 56.1 5.2 0.00018 36.1 2.4 18 290-307 4-21 (173)
389 1yks_A Genome polyprotein [con 56.1 11 0.00037 40.3 5.3 69 326-406 176-245 (440)
390 3sr0_A Adenylate kinase; phosp 56.0 7.4 0.00025 36.9 3.5 20 290-309 2-21 (206)
391 2owm_A Nckin3-434, related to 55.9 7.9 0.00027 41.4 4.0 25 281-305 128-154 (443)
392 1nkt_A Preprotein translocase 55.8 28 0.00096 40.3 8.7 74 509-588 147-237 (922)
393 3b6e_A Interferon-induced heli 55.7 10 0.00036 35.2 4.6 71 514-588 82-168 (216)
394 3lnc_A Guanylate kinase, GMP k 55.4 4.9 0.00017 38.5 2.2 19 287-305 26-44 (231)
395 3eiq_A Eukaryotic initiation f 55.4 55 0.0019 33.7 10.6 73 513-588 107-189 (414)
396 3o8b_A HCV NS3 protease/helica 55.2 14 0.00048 41.7 6.1 67 326-406 395-461 (666)
397 1q57_A DNA primase/helicase; d 55.2 8.1 0.00028 42.0 4.2 50 287-347 241-290 (503)
398 3flh_A Uncharacterized protein 54.9 12 0.0004 32.1 4.3 43 507-549 63-108 (124)
399 1ak2_A Adenylate kinase isoenz 54.9 8.4 0.00029 37.0 3.8 20 288-307 16-35 (233)
400 2iyv_A Shikimate kinase, SK; t 54.8 7.8 0.00027 35.4 3.4 18 290-307 4-21 (184)
401 2l8b_A Protein TRAI, DNA helic 54.7 18 0.00061 33.6 5.6 59 274-342 35-95 (189)
402 3fb4_A Adenylate kinase; psych 54.7 7.9 0.00027 36.4 3.5 18 290-307 2-19 (216)
403 3qf7_A RAD50; ABC-ATPase, ATPa 54.5 7.2 0.00025 40.6 3.4 18 290-307 25-42 (365)
404 3tqc_A Pantothenate kinase; bi 54.1 21 0.00071 36.4 6.7 16 290-305 94-109 (321)
405 3iwh_A Rhodanese-like domain p 54.1 9.1 0.00031 31.8 3.4 35 514-548 56-90 (103)
406 1in4_A RUVB, holliday junction 54.0 7.1 0.00024 40.0 3.2 18 289-306 52-69 (334)
407 1qf9_A UMP/CMP kinase, protein 54.0 7 0.00024 35.8 2.9 17 290-306 8-24 (194)
408 2pez_A Bifunctional 3'-phospho 53.9 5.5 0.00019 36.4 2.2 18 288-305 5-22 (179)
409 2plr_A DTMP kinase, probable t 53.8 5.2 0.00018 37.4 2.0 20 288-307 4-23 (213)
410 1ye8_A Protein THEP1, hypothet 53.6 7.6 0.00026 35.8 3.1 16 290-305 2-17 (178)
411 2bwj_A Adenylate kinase 5; pho 53.6 7.6 0.00026 35.8 3.1 19 288-306 12-30 (199)
412 2rep_A Kinesin-like protein KI 53.6 7.1 0.00024 40.8 3.2 25 281-305 107-133 (376)
413 3pxg_A Negative regulator of g 53.3 9.3 0.00032 41.2 4.2 20 288-307 201-220 (468)
414 2if2_A Dephospho-COA kinase; a 53.3 5.9 0.0002 37.0 2.3 16 290-305 3-18 (204)
415 1cke_A CK, MSSA, protein (cyti 53.3 7.4 0.00025 36.9 3.1 19 289-307 6-24 (227)
416 2og2_A Putative signal recogni 53.1 12 0.00042 38.8 4.8 19 288-306 157-175 (359)
417 1zak_A Adenylate kinase; ATP:A 53.1 9.8 0.00034 36.0 3.9 19 289-307 6-24 (222)
418 3umf_A Adenylate kinase; rossm 53.1 8.8 0.0003 36.8 3.5 21 289-309 30-50 (217)
419 1zd8_A GTP:AMP phosphotransfer 53.1 7.3 0.00025 37.2 3.0 17 289-305 8-24 (227)
420 1aky_A Adenylate kinase; ATP:A 53.0 9.9 0.00034 36.0 3.9 20 288-307 4-23 (220)
421 1rz3_A Hypothetical protein rb 52.9 13 0.00045 34.6 4.7 16 290-305 24-39 (201)
422 2jlq_A Serine protease subunit 52.9 16 0.00056 38.9 6.0 68 327-406 188-256 (451)
423 1jjv_A Dephospho-COA kinase; P 52.9 6 0.0002 37.0 2.3 16 290-305 4-19 (206)
424 1ukz_A Uridylate kinase; trans 52.8 6.1 0.00021 36.8 2.3 16 290-305 17-32 (203)
425 4a74_A DNA repair and recombin 52.8 6.8 0.00023 37.1 2.7 21 287-307 24-44 (231)
426 1gmx_A GLPE protein; transfera 52.7 17 0.00059 30.0 5.0 37 513-549 57-94 (108)
427 2pt5_A Shikimate kinase, SK; a 52.6 6.3 0.00022 35.3 2.3 17 290-306 2-18 (168)
428 3dl0_A Adenylate kinase; phosp 52.4 7.7 0.00026 36.6 3.0 18 290-307 2-19 (216)
429 3c8u_A Fructokinase; YP_612366 51.9 6.9 0.00024 36.9 2.5 18 288-305 22-39 (208)
430 2iut_A DNA translocase FTSK; n 51.7 17 0.00059 40.1 6.0 27 288-314 214-240 (574)
431 2v3c_C SRP54, signal recogniti 51.5 9.4 0.00032 40.7 3.8 23 289-311 100-122 (432)
432 1sxj_C Activator 1 40 kDa subu 51.4 13 0.00043 38.0 4.7 17 291-307 49-65 (340)
433 2oca_A DAR protein, ATP-depend 51.1 46 0.0016 35.7 9.4 76 327-411 347-426 (510)
434 2wwf_A Thymidilate kinase, put 51.0 7.2 0.00025 36.5 2.5 21 287-307 9-29 (212)
435 2cdn_A Adenylate kinase; phosp 51.0 9.6 0.00033 35.4 3.4 17 290-306 22-38 (201)
436 3asz_A Uridine kinase; cytidin 50.9 7.8 0.00027 36.3 2.8 17 289-305 7-23 (211)
437 2jaq_A Deoxyguanosine kinase; 50.8 8.6 0.00029 35.5 3.0 17 290-306 2-18 (205)
438 4gl2_A Interferon-induced heli 50.7 3.7 0.00013 46.6 0.5 70 515-588 57-142 (699)
439 2i3b_A HCR-ntpase, human cance 50.7 10 0.00034 35.4 3.4 29 399-427 103-133 (189)
440 1g8p_A Magnesium-chelatase 38 50.6 5 0.00017 41.0 1.4 18 288-305 45-62 (350)
441 3a4m_A L-seryl-tRNA(SEC) kinas 50.6 6.8 0.00023 38.5 2.4 18 290-307 6-23 (260)
442 1nn5_A Similar to deoxythymidy 50.4 7.6 0.00026 36.4 2.6 21 287-307 8-28 (215)
443 2f1r_A Molybdopterin-guanine d 50.4 6 0.0002 36.4 1.8 18 290-307 4-21 (171)
444 2pbr_A DTMP kinase, thymidylat 50.3 7 0.00024 35.8 2.3 16 291-306 3-18 (195)
445 3qks_A DNA double-strand break 50.1 11 0.00037 35.6 3.6 15 291-305 26-40 (203)
446 2qt1_A Nicotinamide riboside k 50.1 8.7 0.0003 35.9 2.9 18 288-305 21-38 (207)
447 3auy_A DNA double-strand break 50.1 10 0.00034 39.5 3.7 15 291-305 28-42 (371)
448 2ipc_A Preprotein translocase 49.9 30 0.001 40.3 7.6 58 509-572 115-176 (997)
449 3tif_A Uncharacterized ABC tra 49.9 7.8 0.00027 37.5 2.6 18 287-304 30-47 (235)
450 4anj_A Unconventional myosin-V 49.8 13 0.00046 44.0 5.0 81 232-314 80-169 (1052)
451 1ry6_A Internal kinesin; kines 49.7 10 0.00036 39.3 3.7 19 287-305 82-102 (360)
452 1g41_A Heat shock protein HSLU 49.6 9.6 0.00033 40.8 3.4 18 288-305 50-67 (444)
453 3cmw_A Protein RECA, recombina 49.5 18 0.00063 45.1 6.3 39 288-337 34-72 (1706)
454 2vli_A Antibiotic resistance p 49.4 5.7 0.00019 36.2 1.4 20 288-307 5-24 (183)
455 3k1j_A LON protease, ATP-depen 49.2 14 0.00046 41.3 4.8 22 284-305 56-77 (604)
456 3f9v_A Minichromosome maintena 48.9 7.8 0.00027 43.2 2.8 15 290-304 329-343 (595)
457 2v9p_A Replication protein E1; 48.8 9.1 0.00031 38.8 3.0 19 287-305 125-143 (305)
458 2yhs_A FTSY, cell division pro 48.7 15 0.00052 39.7 4.9 18 289-306 294-311 (503)
459 1z5z_A Helicase of the SNF2/RA 48.3 33 0.0011 33.8 7.1 94 296-409 92-191 (271)
460 1uf9_A TT1252 protein; P-loop, 48.3 9.8 0.00033 35.2 3.0 16 290-305 10-25 (203)
461 3hix_A ALR3790 protein; rhodan 48.1 13 0.00043 30.9 3.3 36 514-549 52-88 (106)
462 2bbw_A Adenylate kinase 4, AK4 48.1 9.9 0.00034 36.8 3.1 17 289-305 28-44 (246)
463 2z0h_A DTMP kinase, thymidylat 47.9 8.1 0.00028 35.6 2.3 17 291-307 3-19 (197)
464 1e4v_A Adenylate kinase; trans 47.9 12 0.0004 35.3 3.5 18 290-307 2-19 (214)
465 4ehx_A Tetraacyldisaccharide 4 47.9 38 0.0013 34.3 7.5 30 513-543 225-254 (315)
466 2jtq_A Phage shock protein E; 47.9 33 0.0011 26.8 5.7 36 513-549 40-76 (85)
467 4e22_A Cytidylate kinase; P-lo 47.5 11 0.00038 36.7 3.3 18 288-305 27-44 (252)
468 2whx_A Serine protease/ntpase/ 47.3 30 0.001 38.7 7.2 69 326-406 354-423 (618)
469 3fkq_A NTRC-like two-domain pr 47.3 35 0.0012 35.2 7.4 30 294-334 150-179 (373)
470 3be4_A Adenylate kinase; malar 47.0 13 0.00045 35.1 3.7 19 289-307 6-24 (217)
471 2p5t_B PEZT; postsegregational 47.0 5.8 0.0002 38.8 1.1 18 289-306 33-50 (253)
472 3cwq_A Para family chromosome 46.9 1.4E+02 0.0047 27.7 11.0 21 292-312 5-25 (209)
473 1qxn_A SUD, sulfide dehydrogen 46.8 16 0.00055 31.9 3.9 37 513-549 81-118 (137)
474 2fsx_A RV0390, COG0607: rhodan 46.5 20 0.00068 31.6 4.6 37 513-549 79-116 (148)
475 3l9o_A ATP-dependent RNA helic 46.4 53 0.0018 39.5 9.5 65 513-588 226-296 (1108)
476 2cbz_A Multidrug resistance-as 45.8 9.8 0.00034 36.9 2.6 18 287-304 30-47 (237)
477 3nhv_A BH2092 protein; alpha-b 45.7 15 0.00051 32.4 3.6 36 514-549 72-109 (144)
478 3tlx_A Adenylate kinase 2; str 45.6 13 0.00046 35.9 3.6 20 288-307 29-48 (243)
479 3tqf_A HPR(Ser) kinase; transf 45.3 11 0.00037 34.9 2.6 21 287-307 15-35 (181)
480 2xb4_A Adenylate kinase; ATP-b 45.3 14 0.00047 35.2 3.5 18 290-307 2-19 (223)
481 1vht_A Dephospho-COA kinase; s 45.2 9.4 0.00032 36.0 2.3 16 290-305 6-21 (218)
482 1cs1_A CGS, protein (cystathio 45.1 2.6E+02 0.0088 28.2 14.1 105 284-413 63-178 (386)
483 2ce7_A Cell division protein F 45.1 11 0.00038 40.7 3.1 17 289-305 50-66 (476)
484 1sgw_A Putative ABC transporte 45.0 11 0.00038 35.9 2.8 18 287-304 34-51 (214)
485 3bs4_A Uncharacterized protein 45.0 29 0.001 34.1 5.9 51 288-350 21-71 (260)
486 2grj_A Dephospho-COA kinase; T 44.9 9.7 0.00033 35.6 2.3 18 290-307 14-31 (192)
487 3cmu_A Protein RECA, recombina 44.3 19 0.00064 45.8 5.3 46 287-344 1080-1125(2050)
488 1z6t_A APAF-1, apoptotic prote 44.3 47 0.0016 36.4 8.3 19 289-307 148-166 (591)
489 2vhj_A Ntpase P4, P4; non- hyd 44.2 12 0.00041 38.2 3.0 23 288-310 123-145 (331)
490 2fz4_A DNA repair protein RAD2 43.9 60 0.002 31.0 8.0 60 499-572 119-179 (237)
491 2pze_A Cystic fibrosis transme 43.8 11 0.00038 36.2 2.7 18 287-304 33-50 (229)
492 3gfo_A Cobalt import ATP-bindi 43.7 11 0.00037 37.5 2.6 18 287-304 33-50 (275)
493 1tq1_A AT5G66040, senescence-a 43.4 17 0.00057 31.3 3.5 37 513-549 81-118 (129)
494 2chq_A Replication factor C sm 43.2 12 0.00042 37.2 2.9 18 290-307 40-57 (319)
495 2pcj_A ABC transporter, lipopr 43.1 11 0.00039 36.0 2.6 18 287-304 29-46 (224)
496 2ff7_A Alpha-hemolysin translo 43.0 11 0.00039 36.6 2.6 18 287-304 34-51 (247)
497 3m6a_A ATP-dependent protease 43.0 13 0.00043 41.0 3.2 19 287-305 107-125 (543)
498 3pxi_A Negative regulator of g 42.8 16 0.00054 42.0 4.2 21 288-308 201-221 (758)
499 2ghi_A Transport protein; mult 42.8 12 0.00039 36.9 2.6 18 287-304 45-62 (260)
500 1lkx_A Myosin IE heavy chain; 42.7 18 0.00063 40.9 4.5 81 232-314 31-119 (697)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-65 Score=565.26 Aligned_cols=392 Identities=41% Similarity=0.666 Sum_probs=363.7
Q ss_pred hcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhc
Q 038133 236 DFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISR 315 (671)
Q Consensus 236 ~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~ 315 (671)
+.++.+.|..+|.|+.+|++++|++.++++|...||..|||+|.++||.+++|+|++++||||||||++|++|++..+..
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc
Q 038133 316 LPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR 395 (671)
Q Consensus 316 ~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~ 395 (671)
.+.. ....++++|||+||++||.|+++.+.+++...++++..++||.+...+...+..+++|+|+||++|.+++.+.
T Consensus 121 ~~~~---~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 197 (434)
T 2db3_A 121 DPHE---LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT 197 (434)
T ss_dssp SCCC---CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT
T ss_pred cccc---cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC
Confidence 4321 1235789999999999999999999999998899999999999998888888889999999999999999988
Q ss_pred ccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCe
Q 038133 396 YAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPV 475 (671)
Q Consensus 396 ~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~ 475 (671)
...+.++++|||||||+|++++|.+.+..++..+... ..+|+++||||+|+.+..++..++.++.
T Consensus 198 ~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~---------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 262 (434)
T 2db3_A 198 FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR---------------PEHQTLMFSATFPEEIQRMAGEFLKNYV 262 (434)
T ss_dssp SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC---------------SSCEEEEEESCCCHHHHHHHHTTCSSCE
T ss_pred CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC---------------CCceEEEEeccCCHHHHHHHHHhccCCE
Confidence 8889999999999999999999999999999876321 1589999999999999999999999999
Q ss_pred EEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHH
Q 038133 476 VVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREI 555 (671)
Q Consensus 476 ~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~ 555 (671)
.+.++........+.+.+..+....|...|.+++..... ++||||+++..|+.+++.|...++.+..+||++++.+|+.
T Consensus 263 ~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 341 (434)
T 2db3_A 263 FVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQ 341 (434)
T ss_dssp EEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHH
T ss_pred EEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 999998888888899999888889999999999988654 4999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecC-CCchHHHHHHHHHH
Q 038133 556 SLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF-HDTDVFYDLKQMLI 634 (671)
Q Consensus 556 ~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~-~d~~~~~~l~~~l~ 634 (671)
+++.|++|..+|||||+++++|||+|++++||+||+|.++.+|+||+||+||.|+.|.|++|+++ ++..+..+|.+.+.
T Consensus 342 ~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 342 ALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp HHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999994 57889999999999
Q ss_pred hcCCCCChhHHh
Q 038133 635 QSNSPVPPELAK 646 (671)
Q Consensus 635 ~~~~~vp~~L~~ 646 (671)
..++.+|++|.+
T Consensus 422 ~~~~~vp~~l~~ 433 (434)
T 2db3_A 422 GSGQTVPDFLRT 433 (434)
T ss_dssp HTTCCCCGGGC-
T ss_pred HcCCCCCHHHHh
Confidence 999999999865
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-60 Score=522.93 Aligned_cols=404 Identities=40% Similarity=0.653 Sum_probs=360.2
Q ss_pred cccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCC
Q 038133 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPP 318 (671)
Q Consensus 239 i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~ 318 (671)
+.+.|..+|.|+.+|+++++++.+.+++...||..|+|+|.++||.++.+++++++||||||||++|++|++..+...+.
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999998764221
Q ss_pred CC----------cccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH
Q 038133 319 IS----------EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL 388 (671)
Q Consensus 319 ~~----------~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L 388 (671)
.. ......++++||++||++||.|+++.+.+++...++++..++|+.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 00 00112357899999999999999999999998889999999999998888888888999999999999
Q ss_pred HHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHH
Q 038133 389 IDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLAR 468 (671)
Q Consensus 389 ~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~ 468 (671)
.+.+......+..+++|||||||++.+++|...+..++........ ...+++++|||+++.+..++.
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~i~~SAT~~~~~~~~~~ 229 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPK-------------GVRHTMMFSATFPKEIQMLAR 229 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCB-------------TTBEEEEEESCCCHHHHHHHH
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCc-------------CCcEEEEEEEeCCHHHHHHHH
Confidence 9999888778999999999999999999999999999875432110 147899999999999999999
Q ss_pred HhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCC
Q 038133 469 KYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGG 547 (671)
Q Consensus 469 ~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~ 547 (671)
.++.++..+.++........+.+.+..+....+...+.+++... .++++||||+++..++.+++.|...++.+..+||+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~ 309 (417)
T 2i4i_A 230 DFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 309 (417)
T ss_dssp HHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred HHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCC
Confidence 99999999888877777778888888888888999999999886 47789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHH
Q 038133 548 KSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFY 627 (671)
Q Consensus 548 ~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~ 627 (671)
+++.+|..+++.|++|..+|||||+++++|||+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...+.
T Consensus 310 ~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 389 (417)
T 2i4i_A 310 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 389 (417)
T ss_dssp SCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHH
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHhchhccCCCC
Q 038133 628 DLKQMLIQSNSPVPPELAKHEASKFKPG 655 (671)
Q Consensus 628 ~l~~~l~~~~~~vp~~L~~~~~~~~~~g 655 (671)
.+.+.+......+|.+|.++....+..|
T Consensus 390 ~l~~~~~~~~~~~~~~l~~~~~~~~~~g 417 (417)
T 2i4i_A 390 DLLDLLVEAKQEVPSWLENMAYEHHYKG 417 (417)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHTCSCC--
T ss_pred HHHHHHHHhcCcCCHHHHHHHHhhhcCC
Confidence 9999999999999999998877765443
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.3e-58 Score=502.36 Aligned_cols=377 Identities=33% Similarity=0.566 Sum_probs=344.5
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcc
Q 038133 243 GSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEE 322 (671)
Q Consensus 243 g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~ 322 (671)
...-+.+..+|+++++++.++++|...||..|+|+|.++|+.++.++++++++|||||||++|++|++..+..
T Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------- 101 (410)
T 2j0s_A 29 TSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------- 101 (410)
T ss_dssp CCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------
T ss_pred CCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------
Confidence 3444567789999999999999999999999999999999999999999999999999999999999887632
Q ss_pred cccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCc
Q 038133 323 NEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQC 402 (671)
Q Consensus 323 ~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~ 402 (671)
...++++||++||++|+.|+++.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+.+.+....+..+
T Consensus 102 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~ 180 (410)
T 2j0s_A 102 -QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 180 (410)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred -ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhhe
Confidence 1357899999999999999999999999999999999999999888888888899999999999999998888888999
Q ss_pred cEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCC
Q 038133 403 NYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTA 482 (671)
Q Consensus 403 ~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~ 482 (671)
++|||||||++.+++|...+..++..++. ..|++++|||+++.+..++..++.+|..+.+...
T Consensus 181 ~~vViDEah~~~~~~~~~~~~~i~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 243 (410)
T 2j0s_A 181 KMLVLDEADEMLNKGFKEQIYDVYRYLPP-----------------ATQVVLISATLPHEILEMTNKFMTDPIRILVKRD 243 (410)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHTTSCT-----------------TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGG
T ss_pred eEEEEccHHHHHhhhhHHHHHHHHHhCcc-----------------CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCc
Confidence 99999999999999999999999888765 5789999999999999999999999988877766
Q ss_pred CccccceeEEEEEecc-chhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhh
Q 038133 483 GKATELISQHVVMMKE-SEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR 561 (671)
Q Consensus 483 ~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~ 561 (671)
......+.+.+..+.. ..+...+..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 323 (410)
T 2j0s_A 244 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323 (410)
T ss_dssp GCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHH
Confidence 6666677777776654 448889999998888889999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCCC
Q 038133 562 TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641 (671)
Q Consensus 562 ~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp 641 (671)
+|..+|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+++......+|
T Consensus 324 ~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 324 SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp HTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred CCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777776
Q ss_pred hhH
Q 038133 642 PEL 644 (671)
Q Consensus 642 ~~L 644 (671)
..+
T Consensus 404 ~~~ 406 (410)
T 2j0s_A 404 MNV 406 (410)
T ss_dssp SCC
T ss_pred cch
Confidence 543
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-56 Score=490.11 Aligned_cols=380 Identities=33% Similarity=0.561 Sum_probs=329.9
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcc
Q 038133 243 GSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEE 322 (671)
Q Consensus 243 g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~ 322 (671)
....+.++.+|.++++++.+++++...||..|+|+|.++|+.++.++++++++|||||||++|++|++..+...
T Consensus 32 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------ 105 (414)
T 3eiq_A 32 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------ 105 (414)
T ss_dssp CCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT------
T ss_pred CCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc------
Confidence 34556778899999999999999999999999999999999999999999999999999999999999887431
Q ss_pred cccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHh-cCCeEEEEcchHHHHHHhhcccccCC
Q 038133 323 NEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIR-QGCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 323 ~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
..++++||++||++|+.|+++.+.+++...++.+..++|+.........+. .+++|+|+||++|.+.+.+....+..
T Consensus 106 --~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 106 --LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred --CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 257889999999999999999999999999999999999998877766665 57899999999999999988888899
Q ss_pred ccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECC
Q 038133 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT 481 (671)
Q Consensus 402 ~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~ 481 (671)
+++|||||||++.+++|...+..++..++. ..++++||||+++.+..+...++.++..+....
T Consensus 184 ~~~vViDEah~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 246 (414)
T 3eiq_A 184 IKMFVLDEADEMLSRGFKDQIYDIFQKLNS-----------------NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 246 (414)
T ss_dssp CCEEEECSHHHHHHTTTHHHHHHHHTTSCT-----------------TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCC
T ss_pred CcEEEEECHHHhhccCcHHHHHHHHHhCCC-----------------CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecC
Confidence 999999999999999999999999988865 578999999999999999999999998888777
Q ss_pred CCccccceeEEEEEec-cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHh
Q 038133 482 AGKATELISQHVVMMK-ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560 (671)
Q Consensus 482 ~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F 560 (671)
.......+.+.+.... ...+...+..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f 326 (414)
T 3eiq_A 247 EELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREF 326 (414)
T ss_dssp CCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHH
T ss_pred CccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHH
Confidence 7666666777666664 445888999999888888999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCC
Q 038133 561 RTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPV 640 (671)
Q Consensus 561 ~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~v 640 (671)
++|..+|||||+++++|||+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...+..+..++......+
T Consensus 327 ~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (414)
T 3eiq_A 327 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEM 406 (414)
T ss_dssp SCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEEC
T ss_pred HcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ChhHHhc
Q 038133 641 PPELAKH 647 (671)
Q Consensus 641 p~~L~~~ 647 (671)
|.++.++
T Consensus 407 ~~~~~~l 413 (414)
T 3eiq_A 407 PLNVADL 413 (414)
T ss_dssp CC-----
T ss_pred Chhhhhc
Confidence 8877654
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.3e-55 Score=480.17 Aligned_cols=373 Identities=32% Similarity=0.558 Sum_probs=335.5
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCC
Q 038133 248 RPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEG 327 (671)
Q Consensus 248 ~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g 327 (671)
.+..+|+++++++.+++++...||..|+|+|.++++.++.++++++++|||+|||++|++|++..+.. ...+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~--------~~~~ 89 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP--------KLNK 89 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT--------TSCS
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh--------ccCC
Confidence 34568999999999999999999999999999999999999999999999999999999999988643 1256
Q ss_pred CeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEE
Q 038133 328 PYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVL 407 (671)
Q Consensus 328 ~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vVi 407 (671)
+++||++||++|+.|+++.+.+++...++.+..++|+.........+..+++|+|+||++|.+.+.+....+.++++|||
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 90 IQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEE
Confidence 78999999999999999999999998899999999999888777777778999999999999999887778899999999
Q ss_pred cccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCcccc
Q 038133 408 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATE 487 (671)
Q Consensus 408 DEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~ 487 (671)
||||++.+.+|...+..++..++. ..+++++|||+++.+..+...++..|..+..... ....
T Consensus 170 DEaH~~~~~~~~~~~~~i~~~~~~-----------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 231 (400)
T 1s2m_A 170 DEADKMLSRDFKTIIEQILSFLPP-----------------THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLK 231 (400)
T ss_dssp ESHHHHSSHHHHHHHHHHHTTSCS-----------------SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCT
T ss_pred eCchHhhhhchHHHHHHHHHhCCc-----------------CceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccC
Confidence 999999988888888888877754 5789999999999999999999998876654432 3345
Q ss_pred ceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcE
Q 038133 488 LISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNV 567 (671)
Q Consensus 488 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~V 567 (671)
.+.+.+..+....+...+..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|..+|
T Consensus 232 ~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 311 (400)
T 1s2m_A 232 GITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRT 311 (400)
T ss_dssp TEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSE
T ss_pred CceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcE
Confidence 56677777788889999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCCChhHHh
Q 038133 568 LVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAK 646 (671)
Q Consensus 568 LVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~ 646 (671)
||||+++++|+|+|++++||+|++|+++..|.||+||+||.|+.|.|++|+++.+...+..+.+.+.....++|..+.+
T Consensus 312 Lv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 312 LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp EEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred EEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998887777777766543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.8e-54 Score=469.09 Aligned_cols=370 Identities=31% Similarity=0.526 Sum_probs=328.6
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
.+|+++++++.++++|...||..|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..++++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~~~ 79 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVSV 79 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--------TTCCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--------CCCeeE
Confidence 469999999999999999999999999999999999999999999999999999999999876431 246789
Q ss_pred EEEecchhhHHHHHHHHHHHHhhc-CcEEEEEECCCchHHHHHHHhcC-CeEEEEcchHHHHHHhhcccccCCccEEEEc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQG-CEVVIATPGRLIDCLERRYAVLNQCNYVVLD 408 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~-~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViD 408 (671)
||+|||++|+.|+++.+.++.... ++++..++|+.........+..+ ++|+|+||++|...+......+.++++||||
T Consensus 80 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViD 159 (391)
T 1xti_A 80 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 159 (391)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEe
Confidence 999999999999999999998776 78999999999877776666554 7999999999999998877788999999999
Q ss_pred ccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCC-ccc
Q 038133 409 EADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG-KAT 486 (671)
Q Consensus 409 Eah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~-~~~ 486 (671)
|||++.+ .++...+..++..++. ..+++++|||+++.+..++..++.+|..+.+.... ...
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPH-----------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTL 222 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCS-----------------SSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCC
T ss_pred CHHHHhhccchHHHHHHHHhhCCC-----------------CceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCc
Confidence 9999987 4777788888877654 57899999999999999999999999888766543 234
Q ss_pred cceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCc
Q 038133 487 ELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN 566 (671)
Q Consensus 487 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~ 566 (671)
..+.+.+..+....+...+..++.....+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 302 (391)
T 1xti_A 223 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 302 (391)
T ss_dssp TTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS
T ss_pred ccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc
Confidence 55667777777888999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCC-CchHHHHHHHHHHhcCCCCChhHH
Q 038133 567 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPELA 645 (671)
Q Consensus 567 VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~-d~~~~~~l~~~l~~~~~~vp~~L~ 645 (671)
|||||+++++|+|+|++++||+|++|+++..|.||+||+||.|+.|.|++|+++. +..++..+.+.+......+|.++.
T Consensus 303 vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 303 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 382 (391)
T ss_dssp EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcccc
Confidence 9999999999999999999999999999999999999999999999999999876 456677777777666677776543
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=7.6e-56 Score=480.20 Aligned_cols=378 Identities=33% Similarity=0.556 Sum_probs=191.3
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCccc
Q 038133 244 SKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEEN 323 (671)
Q Consensus 244 ~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~ 323 (671)
.....+..+|+++++++.+++++...||..|+|+|.++++.++.++++++++|||+|||++|++|++..+...
T Consensus 14 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~------- 86 (394)
T 1fuu_A 14 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------- 86 (394)
T ss_dssp ESSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-------
T ss_pred hhcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-------
Confidence 3456777889999999999999999999999999999999999999999999999999999999999887531
Q ss_pred ccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCcc
Q 038133 324 EAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCN 403 (671)
Q Consensus 324 ~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~ 403 (671)
..++++||++||++|+.|+++.+.+++...++.+..++|+.........+. +++|+|+||++|.+.+.+....+.+++
T Consensus 87 -~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~ 164 (394)
T 1fuu_A 87 -VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIK 164 (394)
T ss_dssp -CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred -CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCc
Confidence 357899999999999999999999999989999999999988776655443 689999999999999988777788999
Q ss_pred EEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCC
Q 038133 404 YVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG 483 (671)
Q Consensus 404 ~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~ 483 (671)
+||+||||++.+.+|...+..++..++. ..+++++|||+++.+..+...++..|..+......
T Consensus 165 ~vIiDEah~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (394)
T 1fuu_A 165 MFILDEADEMLSSGFKEQIYQIFTLLPP-----------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE 227 (394)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHHSCT-----------------TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--
T ss_pred EEEEEChHHhhCCCcHHHHHHHHHhCCC-----------------CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcc
Confidence 9999999999999999999999988865 57899999999999999999999999988877655
Q ss_pred ccccceeEEEEEecc-chhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhc
Q 038133 484 KATELISQHVVMMKE-SEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT 562 (671)
Q Consensus 484 ~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~ 562 (671)
.....+.+.+..+.. ..+...+..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 307 (394)
T 1fuu_A 228 LTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 307 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC
Confidence 555555555444433 3367778888877778899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCCCh
Q 038133 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPP 642 (671)
Q Consensus 563 g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~ 642 (671)
|..+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.|++|+++++...+..+.+++......+|.
T Consensus 308 ~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 308 GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888788887
Q ss_pred hHHhc
Q 038133 643 ELAKH 647 (671)
Q Consensus 643 ~L~~~ 647 (671)
.+.++
T Consensus 388 ~~~~~ 392 (394)
T 1fuu_A 388 DIATL 392 (394)
T ss_dssp -----
T ss_pred chhhh
Confidence 66544
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.2e-53 Score=465.86 Aligned_cols=367 Identities=32% Similarity=0.528 Sum_probs=322.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccc
Q 038133 247 PRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENE 324 (671)
Q Consensus 247 p~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~--rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~ 324 (671)
+.++.+|+++++++.+++++...||..|+|+|.++|+.++.+ ++++++||||||||++|++|++..+.. .
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~--------~ 92 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP--------A 92 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT--------T
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh--------c
Confidence 356788999999999999999999999999999999999987 999999999999999999999988753 2
Q ss_pred cCCCeEEEEecchhhHHHHHHHHHHHHhhc-CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhh-cccccCCc
Q 038133 325 AEGPYAVVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER-RYAVLNQC 402 (671)
Q Consensus 325 ~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~-~~~~l~~~ 402 (671)
..++++||++||++|+.|+++.+.++...+ ++.+....++....... ..+++|+|+||++|.+.+.+ ....+.++
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 356789999999999999999999988765 57788888876644332 34689999999999998865 45567899
Q ss_pred cEEEEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECC
Q 038133 403 NYVVLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT 481 (671)
Q Consensus 403 ~~vViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~ 481 (671)
++|||||||++.+ .++...+..++..++. ..+++++|||+++.+..++..++.++..+.+..
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 232 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPR-----------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 232 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCT-----------------TCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCC-----------------CceEEEEEeecCHHHHHHHHHhcCCCeEEeecc
Confidence 9999999999987 6888888888887765 578999999999999999999999999888877
Q ss_pred CCccccceeEEEEEec-cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHh
Q 038133 482 AGKATELISQHVVMMK-ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560 (671)
Q Consensus 482 ~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F 560 (671)
.......+.+.+.... ...+...+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 312 (412)
T 3fht_A 233 EEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 312 (412)
T ss_dssp GGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred ccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHH
Confidence 7666777777766654 456888888999888889999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEecccccccCCCCCCcEEEEcCCC------CCHHHHHHHhcccCCCCCccEEEEEecCCC-chHHHHHHHHH
Q 038133 561 RTKRYNVLVATDVAGRGIDIPDVAHVINYDMP------GNIEMYTHRIGRTGRAGKTGVATTFLTFHD-TDVFYDLKQML 633 (671)
Q Consensus 561 ~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p------~s~~~y~QriGR~gR~G~~g~ai~~~~~~d-~~~~~~l~~~l 633 (671)
++|..+|||||+++++|||+|++++||+|++| .+...|+||+||+||.|+.|.|++|++..+ ...+..+.+.+
T Consensus 313 ~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 392 (412)
T 3fht_A 313 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHF 392 (412)
T ss_dssp HTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHH
T ss_pred HCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999 577999999999999999999999998764 67788888887
Q ss_pred HhcCCCCC
Q 038133 634 IQSNSPVP 641 (671)
Q Consensus 634 ~~~~~~vp 641 (671)
......++
T Consensus 393 ~~~~~~~~ 400 (412)
T 3fht_A 393 NKKIERLD 400 (412)
T ss_dssp TCCCEEC-
T ss_pred CCccccCC
Confidence 76655554
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.7e-53 Score=453.26 Aligned_cols=358 Identities=36% Similarity=0.602 Sum_probs=322.6
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCe
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQ-RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPY 329 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~-rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~ 329 (671)
.+|+++++++.+.+++.+.||..|+|+|.++++.++++ +++++++|||||||++|++|++..+.. ..+++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~---------~~~~~ 76 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---------NNGIE 76 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---------SSSCC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc---------cCCCc
Confidence 46999999999999999999999999999999999988 799999999999999999999887643 35788
Q ss_pred EEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 330 AVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 330 vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
+||++||++|+.|+++.+.+++...++.+..++|+.........+. +++|+|+||++|.+.+......+.++++||+||
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 9999999999999999999998888899999999998776655554 799999999999999988777789999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccce
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i 489 (671)
||++.+++|...+..++..++. ..+++++|||+++....+...++.++..+..... ..+
T Consensus 156 ah~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 214 (367)
T 1hv8_A 156 ADEMLNMGFIKDVEKILNACNK-----------------DKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANI 214 (367)
T ss_dssp HHHHHTTTTHHHHHHHHHTSCS-----------------SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSS
T ss_pred chHhhhhchHHHHHHHHHhCCC-----------------CceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCc
Confidence 9999999999999999887755 5789999999999999999999988776655433 345
Q ss_pred eEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q 038133 490 SQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569 (671)
Q Consensus 490 ~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLV 569 (671)
.+.+..+....+...+..++.. .+.++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..+|||
T Consensus 215 ~~~~~~~~~~~~~~~l~~~l~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 293 (367)
T 1hv8_A 215 EQSYVEVNENERFEALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILI 293 (367)
T ss_dssp EEEEEECCGGGHHHHHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEE
T ss_pred eEEEEEeChHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 6666677788888888888874 577899999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCC
Q 038133 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPV 640 (671)
Q Consensus 570 aT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~v 640 (671)
||+++++|+|+|++++||++++|+|+..|.||+||+||.|+.|.|++++++.+...+..+.+.+......+
T Consensus 294 ~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 294 ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp ECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred ECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999888876554433
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.5e-53 Score=461.65 Aligned_cols=358 Identities=35% Similarity=0.558 Sum_probs=316.3
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCccccc
Q 038133 248 RPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325 (671)
Q Consensus 248 ~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~--rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~ 325 (671)
..+.+|+++++++.+++++...||..|+|+|.++++.++.+ +++++++|||||||++|++|++..+.. ..
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~--------~~ 73 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP--------ED 73 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT--------TC
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc--------CC
Confidence 34688999999999999999999999999999999999998 999999999999999999999988743 13
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEE
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYV 405 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~v 405 (671)
.++++||++||++|+.|+++.+.++....++.+..++++...... ..+++|+|+||++|.+.+.+....+.++++|
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 149 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIF 149 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEE
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEE
Confidence 578899999999999999999999998888988888887653322 2468999999999999998888889999999
Q ss_pred EEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCc
Q 038133 406 VLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK 484 (671)
Q Consensus 406 ViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~ 484 (671)
||||||++.+ .++...+..+...++. ..+++++|||+++.+..+...++.++..+.......
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPK-----------------DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEV 212 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCT-----------------TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGC
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCC-----------------CcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccc
Confidence 9999999988 6788888888887765 578999999999999999999999998887776666
Q ss_pred cccceeEEEEEe-ccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcC
Q 038133 485 ATELISQHVVMM-KESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563 (671)
Q Consensus 485 ~~~~i~~~~~~~-~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g 563 (671)
....+.+.+... ....+...+..++.....+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 292 (395)
T 3pey_A 213 NVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG 292 (395)
T ss_dssp SCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT
T ss_pred ccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC
Confidence 666666666655 4556778888888877789999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccccCCCCCCcEEEEcCCCC------CHHHHHHHhcccCCCCCccEEEEEecCCC-chHHHHHHHHHH
Q 038133 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPG------NIEMYTHRIGRTGRAGKTGVATTFLTFHD-TDVFYDLKQMLI 634 (671)
Q Consensus 564 ~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~g~ai~~~~~~d-~~~~~~l~~~l~ 634 (671)
..+|||||+++++|||+|++++||+||+|+ ++..|+||+||+||.|+.|.|++|++..+ ...+..+.+.+.
T Consensus 293 ~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 293 RSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp SCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999 99999999999999999999999998654 455556666554
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.2e-55 Score=488.16 Aligned_cols=375 Identities=32% Similarity=0.521 Sum_probs=181.1
Q ss_pred cccccCCCCCC---CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 239 ISYKGSKIPRP---MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 239 i~~~g~~ip~p---i~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~--rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
+.+.+...|.| +.+|.+++|++.++++|..+||..|+|+|.++||.++.+ +++|++||||||||++|++|++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 33445455544 678999999999999999999999999999999999987 9999999999999999999998876
Q ss_pred hcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhc-CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHH
Q 038133 314 SRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL 392 (671)
Q Consensus 314 ~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l 392 (671)
.. ...++++|||+||++||.|++..+.++.... ++.+...+++....... ..+++|+|+||++|.+.+
T Consensus 157 ~~--------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l 225 (479)
T 3fmp_B 157 EP--------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWC 225 (479)
T ss_dssp CT--------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHH
T ss_pred hh--------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHH
Confidence 43 1356699999999999999999999988764 56777777776543321 346799999999999998
Q ss_pred hh-cccccCCccEEEEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHh
Q 038133 393 ER-RYAVLNQCNYVVLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKY 470 (671)
Q Consensus 393 ~~-~~~~l~~~~~vViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~ 470 (671)
.+ ....+.++++|||||||+|.+ .++...+..++..++. ..|+++||||+++.+..++..+
T Consensus 226 ~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~ 288 (479)
T 3fmp_B 226 SKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR-----------------NCQMLLFSATFEDSVWKFAQKV 288 (479)
T ss_dssp TTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCT-----------------TSEEEEEESCCCHHHHHHHHHH
T ss_pred HhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCc-----------------cceEEEEeCCCCHHHHHHHHHH
Confidence 65 455678999999999999987 6788888888877765 5899999999999999999999
Q ss_pred cCCCeEEEECCCCccccceeEEEEEec-cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCC
Q 038133 471 LRNPVVVTIGTAGKATELISQHVVMMK-ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKS 549 (671)
Q Consensus 471 l~~p~~i~i~~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~ 549 (671)
+.+|..+.+.........+.+.+..+. ...+...|..++.....+++||||+++..|+.++..|...++.+..+||+++
T Consensus 289 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~ 368 (479)
T 3fmp_B 289 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMM 368 (479)
T ss_dssp SSSEEEEEEC----------------------------------------------------------------------
T ss_pred cCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCC
Confidence 999999988877766667777666654 3567788888887777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCC------CHHHHHHHhcccCCCCCccEEEEEecCCC-
Q 038133 550 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG------NIEMYTHRIGRTGRAGKTGVATTFLTFHD- 622 (671)
Q Consensus 550 ~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~g~ai~~~~~~d- 622 (671)
+.+|..+++.|++|..+|||||+++++|||+|++++||+||+|. ++..|+||+||+||.|+.|.|++|++..+
T Consensus 369 ~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~ 448 (479)
T 3fmp_B 369 VEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 448 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcch
Confidence 99999999999999999999999999999999999999999994 67899999999999999999999998765
Q ss_pred chHHHHHHHHHHhcCCCCC
Q 038133 623 TDVFYDLKQMLIQSNSPVP 641 (671)
Q Consensus 623 ~~~~~~l~~~l~~~~~~vp 641 (671)
..++..+.+.+......++
T Consensus 449 ~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 449 MNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhCCCceECC
Confidence 6777777777766555544
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.3e-52 Score=478.61 Aligned_cols=364 Identities=31% Similarity=0.492 Sum_probs=306.0
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEe
Q 038133 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGL--QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA 334 (671)
Q Consensus 257 ~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il--~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~ 334 (671)
.|++.+++++..+||..|+|+|.++|+.++ .++++|++||||||||++|++|++..+..... ....++++|||+
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~----~~~~~~~~lvl~ 102 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF----DSQYMVKAVIVA 102 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----SSTTSCCEEEEC
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc----cccCCCeEEEEc
Confidence 399999999999999999999999999999 78899999999999999999999998875321 113467999999
Q ss_pred cchhhHHHHHHHHHHHHhh----cCcEEEEEECCCchHHHHHHHhc-CCeEEEEcchHHHHHHhhc-ccccCCccEEEEc
Q 038133 335 PTRELAQQIEEETVKFAHY----LGIKVVSIVGGQSIEEQGFRIRQ-GCEVVIATPGRLIDCLERR-YAVLNQCNYVVLD 408 (671)
Q Consensus 335 Ptr~La~Qi~~~~~k~~~~----~~i~v~~~~gg~~~~~~~~~l~~-~~~IiI~Tp~~L~~~l~~~-~~~l~~~~~vViD 408 (671)
||++||.|+++.+.+++.. ..+.+..++|+.....+...+.. +++|+|+||++|.+.+.+. ...+..+++||||
T Consensus 103 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViD 182 (579)
T 3sqw_A 103 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 182 (579)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred chHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEE
Confidence 9999999999999998743 34678889999988777766644 7999999999999988765 4468899999999
Q ss_pred ccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCC----c
Q 038133 409 EADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG----K 484 (671)
Q Consensus 409 Eah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~----~ 484 (671)
|||+|.+++|.+.+..++..++..... .....|+++||||+++.+..++..++..+..+.+.... .
T Consensus 183 Eah~l~~~gf~~~~~~i~~~l~~~~~~----------~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 183 EADRLLEIGFRDDLETISGILNEKNSK----------SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHHCSS----------CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred ChHHhhcCCCHHHHHHHHHHhhhhhcc----------cccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 999999999999998888776431110 01147899999999999999999999998877665432 2
Q ss_pred cccceeEEEEEecc-chhH----HHHHHHHHH-hCCCcEEEEecChhhHHHHHHHHHHc---CCeEEEecCCCCHHHHHH
Q 038133 485 ATELISQHVVMMKE-SEKF----SRLQRLLDE-LGDKTAIVFVNTKKNADMVAKNLDKL---GYRVTTLHGGKSQEQREI 555 (671)
Q Consensus 485 ~~~~i~~~~~~~~~-~~k~----~~L~~ll~~-~~~~~iIVF~~~~~~~~~l~~~L~~~---~~~v~~lhg~~~~~~R~~ 555 (671)
....+.+.+..... ..+. ..+...+.. ..+.++||||+++..|+.++..|... ++.+..+||+|++.+|..
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 23445555554433 2222 223333333 34779999999999999999999987 899999999999999999
Q ss_pred HHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHH
Q 038133 556 SLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLI 634 (671)
Q Consensus 556 ~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~ 634 (671)
+++.|++|..+|||||+++++|||+|+|++||+|++|.++..|+||+||+||.|+.|.|++|+++.+..++..|.....
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888888877653
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2e-52 Score=475.83 Aligned_cols=364 Identities=31% Similarity=0.489 Sum_probs=304.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEe
Q 038133 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGL--QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA 334 (671)
Q Consensus 257 ~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il--~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~ 334 (671)
.|++.+++++...||..|+|+|.++|+.++ .++++|++||||||||++|++|++..+..... ....++++|||+
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~----~~~~~~~~lil~ 153 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF----DSQYMVKAVIVA 153 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----SSTTSCCEEEEC
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc----cccCCeeEEEEc
Confidence 399999999999999999999999999999 67899999999999999999999999875321 112467899999
Q ss_pred cchhhHHHHHHHHHHHHhh----cCcEEEEEECCCchHHHHHHHh-cCCeEEEEcchHHHHHHhhc-ccccCCccEEEEc
Q 038133 335 PTRELAQQIEEETVKFAHY----LGIKVVSIVGGQSIEEQGFRIR-QGCEVVIATPGRLIDCLERR-YAVLNQCNYVVLD 408 (671)
Q Consensus 335 Ptr~La~Qi~~~~~k~~~~----~~i~v~~~~gg~~~~~~~~~l~-~~~~IiI~Tp~~L~~~l~~~-~~~l~~~~~vViD 408 (671)
||++||.|+++.+.+++.. .++.+..++|+.....+...+. .+++|+|+||++|.+.+.+. ...+..+++||||
T Consensus 154 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 233 (563)
T 3i5x_A 154 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 233 (563)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEe
Confidence 9999999999999998653 2467888999988777766663 47999999999999988765 3458899999999
Q ss_pred ccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCC----c
Q 038133 409 EADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG----K 484 (671)
Q Consensus 409 Eah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~----~ 484 (671)
|||+|.+++|.+.+..++..++..... .....|+++||||+++.+..++..++..+..+.+.... .
T Consensus 234 Eah~l~~~~f~~~~~~i~~~l~~~~~~----------~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (563)
T 3i5x_A 234 EADRLLEIGFRDDLETISGILNEKNSK----------SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 303 (563)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHHCSS----------CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred CHHHHhccchHHHHHHHHHhhhhcccc----------CccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcc
Confidence 999999999999999887776431110 01147899999999999999999999998877764332 2
Q ss_pred cccceeEEEEEecc-chhH----HHHHHHHHH-hCCCcEEEEecChhhHHHHHHHHHHc---CCeEEEecCCCCHHHHHH
Q 038133 485 ATELISQHVVMMKE-SEKF----SRLQRLLDE-LGDKTAIVFVNTKKNADMVAKNLDKL---GYRVTTLHGGKSQEQREI 555 (671)
Q Consensus 485 ~~~~i~~~~~~~~~-~~k~----~~L~~ll~~-~~~~~iIVF~~~~~~~~~l~~~L~~~---~~~v~~lhg~~~~~~R~~ 555 (671)
....+.+.+..... ..+. ..+...+.. ..+.++||||+++..|+.++..|... ++.+..+||+|++.+|..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~ 383 (563)
T 3i5x_A 304 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 383 (563)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred ccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Confidence 23345555544432 2222 223333333 34789999999999999999999987 899999999999999999
Q ss_pred HHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHH
Q 038133 556 SLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLI 634 (671)
Q Consensus 556 ~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~ 634 (671)
+++.|++|..+|||||+++++|||+|+|++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...+..|.+...
T Consensus 384 ~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 384 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888888877654
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-50 Score=429.45 Aligned_cols=335 Identities=34% Similarity=0.571 Sum_probs=291.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecch
Q 038133 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTR 337 (671)
Q Consensus 258 l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr 337 (671)
|++.+.+++..+||..|+|+|.++++.+++++++++++|||+|||++|++|++.. ++++||++||+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~~ 66 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPTR 66 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSSH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCCH
Confidence 5788999999999999999999999999999999999999999999999998752 57799999999
Q ss_pred hhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccC
Q 038133 338 ELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417 (671)
Q Consensus 338 ~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~ 417 (671)
+|+.|+++.+.++....++.+..++|+.........+. .++|+|+||++|.+.+......+.++++||+||||++.+++
T Consensus 67 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 67 ELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc
Confidence 99999999999999888999999999988776655543 59999999999999988877778999999999999999999
Q ss_pred ChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEec
Q 038133 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK 497 (671)
Q Consensus 418 f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~ 497 (671)
+...+..++..++. ..+++++|||+++........++.++..+... .....+.+.+..+.
T Consensus 146 ~~~~~~~~~~~~~~-----------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 205 (337)
T 2z0m_A 146 FIDDIKIILAQTSN-----------------RKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVK 205 (337)
T ss_dssp CHHHHHHHHHHCTT-----------------CSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECS
T ss_pred cHHHHHHHHhhCCc-----------------ccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeC
Confidence 99999999888765 47789999999999999999999888766432 22334444444444
Q ss_pred cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccc
Q 038133 498 ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577 (671)
Q Consensus 498 ~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~G 577 (671)
... ......+....++++||||++++.++.+++.|. .+..+||+++..+|..+++.|++|..+|||||+++++|
T Consensus 206 ~~~--~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 279 (337)
T 2z0m_A 206 DDW--RSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRG 279 (337)
T ss_dssp SSS--HHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTT
T ss_pred hHH--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccC
Confidence 332 233356666678899999999999999999887 57899999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHH
Q 038133 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLI 634 (671)
Q Consensus 578 iDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~ 634 (671)
+|+|++++||+|++|+|+..|.||+||+||.|+.|.|++|+. .+...+..+.+.+.
T Consensus 280 id~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 280 LDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999 88888888776654
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-51 Score=460.50 Aligned_cols=390 Identities=28% Similarity=0.435 Sum_probs=267.8
Q ss_pred cCHHHHHHHHhhcCccc-ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCChH
Q 038133 225 MTERDWRIFREDFNISY-KGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQ--RDVIGIAETGSGK 301 (671)
Q Consensus 225 ~~~~~~~~f~~~~~i~~-~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~--rd~ii~a~TGsGK 301 (671)
.+.+++..|.+.+++.. .....|.++..|...++++.+++.+...||..|+|+|.+||+.++++ +++|+++||||||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGK 171 (508)
T 3fho_A 92 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGK 171 (508)
T ss_dssp -----------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccH
Confidence 34455666666666543 23334566777777889999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEE
Q 038133 302 TAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVV 381 (671)
Q Consensus 302 T~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~Ii 381 (671)
|++|+++++..+.. ...++++||++|+++|+.|+++.+.+++...++.+....++...... ..+++|+
T Consensus 172 T~~~~~~il~~l~~--------~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iv 239 (508)
T 3fho_A 172 TAAFALTMLSRVDA--------SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KIDAQIV 239 (508)
T ss_dssp HHHHHHHHHHHSCT--------TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEE
T ss_pred HHHHHHHHHHHHHh--------CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cCCCCEE
Confidence 99999999988753 12467999999999999999999999988877777776665543322 3378999
Q ss_pred EEcchHHHHHHhhcccccCCccEEEEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCC
Q 038133 382 IATPGRLIDCLERRYAVLNQCNYVVLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMP 460 (671)
Q Consensus 382 I~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~ 460 (671)
|+||++|.+.+.+....+.++++|||||||++.+ .++...+..++..++. ..+++++|||++
T Consensus 240 v~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~-----------------~~~~i~lSAT~~ 302 (508)
T 3fho_A 240 IGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR-----------------NTQIVLFSATFS 302 (508)
T ss_dssp EECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCT-----------------TCEEEEEESCCS
T ss_pred EECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCc-----------------CCeEEEEeCCCC
Confidence 9999999999988887899999999999999987 6888889899888875 478999999999
Q ss_pred HHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEe-ccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCC
Q 038133 461 PAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM-KESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGY 539 (671)
Q Consensus 461 ~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~-~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~ 539 (671)
+.++.+...++.++..+.+.........+.+.+... ....+...+..++....++++||||+++..|+.++..|...++
T Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~ 382 (508)
T 3fho_A 303 ERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGH 382 (508)
T ss_dssp THHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTC
T ss_pred HHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCC
Confidence 999999999999998887766655555555555555 4556778888888877789999999999999999999999999
Q ss_pred eEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCC------CCHHHHHHHhcccCCCCCccE
Q 038133 540 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP------GNIEMYTHRIGRTGRAGKTGV 613 (671)
Q Consensus 540 ~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p------~s~~~y~QriGR~gR~G~~g~ 613 (671)
.+..+||++++.+|..+++.|++|..+|||||+++++|||+|++++||++++| .++..|+||+||+||.|+.|.
T Consensus 383 ~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~ 462 (508)
T 3fho_A 383 TVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGV 462 (508)
T ss_dssp CCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CE
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcE
Confidence 99999999999999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred EEEEecC-CCchHHHHHHHHHHhcCCCCChh
Q 038133 614 ATTFLTF-HDTDVFYDLKQMLIQSNSPVPPE 643 (671)
Q Consensus 614 ai~~~~~-~d~~~~~~l~~~l~~~~~~vp~~ 643 (671)
|++|++. .+...+..+.+++......+|..
T Consensus 463 ~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 463 SINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp EEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred EEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 9999984 56777888888877776766643
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.2e-49 Score=445.31 Aligned_cols=343 Identities=20% Similarity=0.301 Sum_probs=279.1
Q ss_pred CCCCCCccc--CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCccc
Q 038133 247 PRPMRNWAE--GKLTPELLRAVER-VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEEN 323 (671)
Q Consensus 247 p~pi~~f~e--~~l~~~i~~~i~~-~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~ 323 (671)
+.....|.. +++++.+.++|.. +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------------ 82 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------------ 82 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------------
Confidence 444556654 6788999999998 6999999999999999999999999999999999999999964
Q ss_pred ccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH------hcCCeEEEEcchHHH------HH
Q 038133 324 EAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI------RQGCEVVIATPGRLI------DC 391 (671)
Q Consensus 324 ~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l------~~~~~IiI~Tp~~L~------~~ 391 (671)
.++.+|||+|+++|+.|+...+.++ |+.+..+.|+.+..+....+ ..+++|+|+||++|. +.
T Consensus 83 --~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~ 156 (591)
T 2v1x_A 83 --SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSR 156 (591)
T ss_dssp --SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHH
T ss_pred --cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHH
Confidence 2468999999999999999988875 88999999998876554332 346899999999874 22
Q ss_pred HhhcccccCCccEEEEcccchhhccC--ChHHHHH--HH-HhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHH
Q 038133 392 LERRYAVLNQCNYVVLDEADRMIDMG--FEPQVVG--VL-DAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERL 466 (671)
Q Consensus 392 l~~~~~~l~~~~~vViDEah~~~~~~--f~~~i~~--il-~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l 466 (671)
+.. ...+.++++|||||||++.++| |.+.+.. ++ ..++ ..++++||||+++.+...
T Consensus 157 l~~-~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~------------------~~~ii~lSAT~~~~v~~~ 217 (591)
T 2v1x_A 157 LEK-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP------------------NASLIGLTATATNHVLTD 217 (591)
T ss_dssp HHH-HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT------------------TSEEEEEESSCCHHHHHH
T ss_pred HHh-hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCC------------------CCcEEEEecCCCHHHHHH
Confidence 332 3447789999999999999988 7776543 22 2222 478999999999999888
Q ss_pred HHHhcCCCeEEEECCCCccccceeEEEEEec--cchhHHHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHcCCeEEE
Q 038133 467 ARKYLRNPVVVTIGTAGKATELISQHVVMMK--ESEKFSRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLGYRVTT 543 (671)
Q Consensus 467 ~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~--~~~k~~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~ 543 (671)
+..++..+..+.+..... ...+...+.... ...+...|..++... .++++||||++++.++.++..|...|+.+..
T Consensus 218 i~~~l~~~~~~~~~~~~~-r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~ 296 (591)
T 2v1x_A 218 AQKILCIEKCFTFTASFN-RPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGA 296 (591)
T ss_dssp HHHHTTCCSCEEEECCCC-CTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhCCCCcEEEecCCC-CcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEE
Confidence 888877654433332221 223333333222 233456666776543 5789999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 544 LHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 544 lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
+||+|++.+|..+++.|.+|..+|||||+++++|||+|+|++||+|++|.|++.|+|++||+||.|++|.|++|+++.|.
T Consensus 297 ~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 297 YHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred hHHH
Q 038133 624 DVFY 627 (671)
Q Consensus 624 ~~~~ 627 (671)
....
T Consensus 377 ~~~~ 380 (591)
T 2v1x_A 377 FRIS 380 (591)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.8e-48 Score=436.28 Aligned_cols=338 Identities=23% Similarity=0.325 Sum_probs=278.4
Q ss_pred CCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCC
Q 038133 250 MRNWAEGKLTPELLRAVER-VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP 328 (671)
Q Consensus 250 i~~f~e~~l~~~i~~~i~~-~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~ 328 (671)
|.+|++++|++.+.+.+.+ +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++. ..+
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~--------------~~g 66 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL--------------LNG 66 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH--------------SSS
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH--------------hCC
Confidence 4679999999999999998 8999999999999999999999999999999999999999874 246
Q ss_pred eEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHH---H-hcCCeEEEEcchHHHHHHhhcccccCCccE
Q 038133 329 YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFR---I-RQGCEVVIATPGRLIDCLERRYAVLNQCNY 404 (671)
Q Consensus 329 ~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l-~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~ 404 (671)
.+|||+|+++|+.|+...+.. +++.+..+.|+.+..+.... + ...++|+|+||++|........+...++++
T Consensus 67 ~~lvi~P~~aL~~q~~~~l~~----~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~ 142 (523)
T 1oyw_A 67 LTVVVSPLISLMKDQVDQLQA----NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVL 142 (523)
T ss_dssp EEEEECSCHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEE
T ss_pred CEEEECChHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCE
Confidence 799999999999999888776 47888889888876554322 2 235899999999995332222334578999
Q ss_pred EEEcccchhhccC--ChHHHHHH---HHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhc--CCCeEE
Q 038133 405 VVLDEADRMIDMG--FEPQVVGV---LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYL--RNPVVV 477 (671)
Q Consensus 405 vViDEah~~~~~~--f~~~i~~i---l~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l--~~p~~i 477 (671)
|||||||++.++| |.+.+..+ ...++ ..+++++|||+++.+.......+ .+|..+
T Consensus 143 vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~------------------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 204 (523)
T 1oyw_A 143 LAVDEAHCISQWGHDFRPEYAALGQLRQRFP------------------TLPFMALTATADDTTRQDIVRLLGLNDPLIQ 204 (523)
T ss_dssp EEESSGGGGCTTSSCCCHHHHGGGGHHHHCT------------------TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE
T ss_pred EEEeCccccCcCCCccHHHHHHHHHHHHhCC------------------CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE
Confidence 9999999999887 66665443 33332 36799999999998766444443 345443
Q ss_pred EECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHH
Q 038133 478 TIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISL 557 (671)
Q Consensus 478 ~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l 557 (671)
+.... ...+. +.......+...+..++....+.++||||++++.++.+++.|...|+.+..+||+|++++|..++
T Consensus 205 -~~~~~--r~~l~--~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 205 -ISSFD--RPNIR--YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp -ECCCC--CTTEE--EEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred -eCCCC--CCceE--EEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 33222 12232 23334466778888888887788999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHH
Q 038133 558 EGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYD 628 (671)
Q Consensus 558 ~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~ 628 (671)
+.|.+|+.+|||||+++++|||+|++++||+|++|.|++.|.||+||+||.|..|.|++|+++.|......
T Consensus 280 ~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~ 350 (523)
T 1oyw_A 280 EKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRR 350 (523)
T ss_dssp HHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHH
T ss_pred HHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998777654433
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.2e-48 Score=424.40 Aligned_cols=332 Identities=20% Similarity=0.302 Sum_probs=269.0
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 262 LLRAVER-VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 262 i~~~i~~-~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
+.+.+.+ +|| .|+|+|.++|+.++++++++++||||||||++|++|++..+. .++++|||+||++||
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----------~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----------CCCEEEEEECCHHHH
Confidence 3444544 466 899999999999999999999999999999999999887662 588999999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEECCCch---HHHHHHHhcC-CeEEEEcchHHHHHHhhcccccCCccEEEEcccchhh--
Q 038133 341 QQIEEETVKFAHYLGIKVVSIVGGQSI---EEQGFRIRQG-CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI-- 414 (671)
Q Consensus 341 ~Qi~~~~~k~~~~~~i~v~~~~gg~~~---~~~~~~l~~~-~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~-- 414 (671)
.|+++.+.+++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+.+.. ..+.++++|||||||++.
T Consensus 78 ~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 78 KQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhc
Confidence 999999999888 89999999999987 5555666666 99999999999888764 557799999999998654
Q ss_pred --------c-cCChHH-HHHHHHhCCCC----CCCCCCchhhhhhhhhcceEEEEecc-CCHHHH-HHHHHhcCCCeEEE
Q 038133 415 --------D-MGFEPQ-VVGVLDAMPSS----NLKPENEDEELDEKRIYRTTYMFSAT-MPPAVE-RLARKYLRNPVVVT 478 (671)
Q Consensus 415 --------~-~~f~~~-i~~il~~l~~~----~~~~~~~~~~~~~~~~~~q~i~~SAT-~~~~~~-~l~~~~l~~p~~i~ 478 (671)
+ ++|.+. +..++..++.. .+. .....|++++||| +|..+. .+...++. +.
T Consensus 155 ~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~----------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~ 220 (414)
T 3oiy_A 155 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPK----------NLKPGILVVSSATAKPRGIRPLLFRDLLN----FT 220 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCT----------TCCCCEEEESSCCSSCCSSTTHHHHHHHS----CC
T ss_pred cchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcc----------cCCCceEEEEecCCCcchhHHHHHHHhhc----cC
Confidence 4 788888 77777766410 000 0015799999999 554443 23333333 12
Q ss_pred ECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEE-EecCCCCHHHHHHHH
Q 038133 479 IGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVT-TLHGGKSQEQREISL 557 (671)
Q Consensus 479 i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~-~lhg~~~~~~R~~~l 557 (671)
+.........+.+.+... .+...|..++... ++++||||+++..|+.++..|...++.+. .+||. +|+ +
T Consensus 221 ~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~ 290 (414)
T 3oiy_A 221 VGRLVSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--F 290 (414)
T ss_dssp SSCCCCCCCSEEEEEESS---CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--H
T ss_pred cCccccccccchheeecc---CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--H
Confidence 222233344455554433 5677788888774 58999999999999999999999999998 89984 444 9
Q ss_pred HHhhcCCCcEEEe----cccccccCCCCC-CcEEEEcCCC--CCHHHHHHHhcccCCCC----CccEEEEEecCCCchHH
Q 038133 558 EGFRTKRYNVLVA----TDVAGRGIDIPD-VAHVINYDMP--GNIEMYTHRIGRTGRAG----KTGVATTFLTFHDTDVF 626 (671)
Q Consensus 558 ~~F~~g~~~VLVa----T~~~~~GiDIp~-v~~VI~~d~p--~s~~~y~QriGR~gR~G----~~g~ai~~~~~~d~~~~ 626 (671)
+.|++|.++|||| |+++++|||+|+ |++||+||+| .++..|+||+||+||.| +.|.|++|+ ++...+
T Consensus 291 ~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~ 368 (414)
T 3oiy_A 291 EDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIF 368 (414)
T ss_dssp HHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHH
T ss_pred HHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHH
Confidence 9999999999999 999999999999 9999999999 99999999999999988 589999999 778888
Q ss_pred HHHHHHHH
Q 038133 627 YDLKQMLI 634 (671)
Q Consensus 627 ~~l~~~l~ 634 (671)
..+.+.+.
T Consensus 369 ~~l~~~~~ 376 (414)
T 3oiy_A 369 ESLKTRLL 376 (414)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88888887
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.9e-47 Score=430.54 Aligned_cols=374 Identities=20% Similarity=0.248 Sum_probs=289.0
Q ss_pred hhhhhccCHHHHHHHHhhcCcccccCCCCCCCCCcccCCCCHHHHHHHH--------HcCCCCCcHHHHHHHHHHhCCCc
Q 038133 219 EKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVE--------RVGYKNPSPIQMAAIPLGLQQRD 290 (671)
Q Consensus 219 ~~~~~~~~~~~~~~f~~~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~--------~~g~~~p~~~Q~~ai~~il~~rd 290 (671)
+..+..|++++++.....|...+..+.. |.+.+.+++. .+|| .|+|+|..++|.+++|+
T Consensus 33 ~~~~~~lsd~el~~~t~~~~~~~~~g~~-----------ld~~l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~- 99 (844)
T 1tf5_A 33 RGDYENLSDDALKHKTIEFKERLEKGAT-----------TDDLLVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN- 99 (844)
T ss_dssp THHHHTCCHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS-
T ss_pred hHHHHhCCHHHHHHHHHHHHHHHhcCCC-----------hHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC-
Confidence 5678889999998888777665543321 2222333332 5899 99999999999999998
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHH
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQ 370 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~ 370 (671)
|+.++||+|||++|++|++...+ .|+.++||+||++||.|+++++..++..+|+++.+++||.+...+
T Consensus 100 -Iaea~TGeGKTlaf~LP~~l~aL-----------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r 167 (844)
T 1tf5_A 100 -IAEMKTGEGKTLTSTLPVYLNAL-----------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEK 167 (844)
T ss_dssp -EEECCTTSCHHHHHHHHHHHHHT-----------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHH
T ss_pred -EEEccCCcHHHHHHHHHHHHHHH-----------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Confidence 99999999999999999985443 477899999999999999999999999999999999999986654
Q ss_pred HHHHhcCCeEEEEcchHH-HHHHhhc------ccccCCccEEEEcccchhh-ccC---------------ChHHHHHHHH
Q 038133 371 GFRIRQGCEVVIATPGRL-IDCLERR------YAVLNQCNYVVLDEADRMI-DMG---------------FEPQVVGVLD 427 (671)
Q Consensus 371 ~~~l~~~~~IiI~Tp~~L-~~~l~~~------~~~l~~~~~vViDEah~~~-~~~---------------f~~~i~~il~ 427 (671)
. ...+|+|+||||++| .+++..+ .+.+..+.++||||||+|+ |++ |...+..|+.
T Consensus 168 ~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~ 245 (844)
T 1tf5_A 168 R--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVR 245 (844)
T ss_dssp H--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHT
T ss_pred H--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHH
Confidence 3 334799999999999 7777543 3567899999999999998 765 5678888888
Q ss_pred hCCCC--------C--C-------------------CCCCch---hhh--------------------------------
Q 038133 428 AMPSS--------N--L-------------------KPENED---EEL-------------------------------- 443 (671)
Q Consensus 428 ~l~~~--------~--~-------------------~~~~~~---~~~-------------------------------- 443 (671)
.++.. . . -..... ..+
T Consensus 246 ~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr 325 (844)
T 1tf5_A 246 TLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGR 325 (844)
T ss_dssp TCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCC
T ss_pred hCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeeccccc
Confidence 88630 0 0 000000 000
Q ss_pred ------------------------------------hhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCcccc
Q 038133 444 ------------------------------------DEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATE 487 (671)
Q Consensus 444 ------------------------------------~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~ 487 (671)
.-...+..+.++|+|.......+...|-.+ ++.++.......
T Consensus 326 ~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~--vv~IPtn~p~~r 403 (844)
T 1tf5_A 326 LMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQ--VVTIPTNRPVVR 403 (844)
T ss_dssp BCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCC--EEECCCSSCCCC
T ss_pred ccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCc--eEEecCCCCccc
Confidence 001123445667777777666666666443 333433322211
Q ss_pred ceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCC
Q 038133 488 LISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRY 565 (671)
Q Consensus 488 ~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~ 565 (671)
.-...+.+.....|+..|..++... .+.++||||+++..++.|+..|...|+.+.++||++++.++..+...|+.|
T Consensus 404 ~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g-- 481 (844)
T 1tf5_A 404 DDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG-- 481 (844)
T ss_dssp EECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--
T ss_pred ccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--
Confidence 1122345667788999999888653 477899999999999999999999999999999999888887666666655
Q ss_pred cEEEecccccccCCCC--------CCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 566 NVLVATDVAGRGIDIP--------DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 566 ~VLVaT~~~~~GiDIp--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
.|||||++++||+||+ ++.+||||+.|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 482 ~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 482 AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 6999999999999999 889999999999999999999999999999999999998885
No 20
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.9e-45 Score=414.90 Aligned_cols=378 Identities=20% Similarity=0.272 Sum_probs=277.7
Q ss_pred hhhhhccCHHHHHHHHhhcCcccccCCCCCCCCCcccCCCCHHHHHHHHH-----cCCCCCcHHHHHHHHHHhCCCcEEE
Q 038133 219 EKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVER-----VGYKNPSPIQMAAIPLGLQQRDVIG 293 (671)
Q Consensus 219 ~~~~~~~~~~~~~~f~~~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~-----~g~~~p~~~Q~~ai~~il~~rd~ii 293 (671)
+..+..+++++++.....|...+..+.. +++ +.++.+..+++ +|. .|+|+|..++|.+++|+ |+
T Consensus 24 e~~~~~lsd~eL~~kt~~fk~rl~~g~~------ld~--~lpeafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Ia 92 (853)
T 2fsf_A 24 EPEMEKLSDEELKGKTAEFRARLEKGEV------LEN--LIPEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IA 92 (853)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCC------HHH--HHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EE
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCCC------hhh--hhHHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--ee
Confidence 5667888998888877776655544331 222 33444443333 565 89999999999999998 99
Q ss_pred EcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHH
Q 038133 294 IAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFR 373 (671)
Q Consensus 294 ~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~ 373 (671)
.++||||||++|++|++.... .|+.++||+||++||.|+++++..++..+|+++.+++||.+.... .
T Consensus 93 em~TGsGKTlaf~LP~l~~~l-----------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~ 159 (853)
T 2fsf_A 93 EMRTGEGKTLTATLPAYLNAL-----------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--R 159 (853)
T ss_dssp ECCTTSCHHHHHHHHHHHHHT-----------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--H
T ss_pred eecCCchHHHHHHHHHHHHHH-----------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--H
Confidence 999999999999999986543 477899999999999999999999999999999999999886533 3
Q ss_pred HhcCCeEEEEcchHH-HHHHhhcc------cccCCccEEEEcccchhh-ccC---------------ChHHHHHHHHhCC
Q 038133 374 IRQGCEVVIATPGRL-IDCLERRY------AVLNQCNYVVLDEADRMI-DMG---------------FEPQVVGVLDAMP 430 (671)
Q Consensus 374 l~~~~~IiI~Tp~~L-~~~l~~~~------~~l~~~~~vViDEah~~~-~~~---------------f~~~i~~il~~l~ 430 (671)
+..+|+|+||||++| .++|..+. ..+..+.++||||||+|+ +.+ |...+..|+..++
T Consensus 160 ~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~ 239 (853)
T 2fsf_A 160 EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLI 239 (853)
T ss_dssp HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-------------------
T ss_pred HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhch
Confidence 445799999999999 78887553 567899999999999998 543 5566667766665
Q ss_pred CCC------------C------CC-----------------------------CCc-----hh-----------------
Q 038133 431 SSN------------L------KP-----------------------------ENE-----DE----------------- 441 (671)
Q Consensus 431 ~~~------------~------~~-----------------------------~~~-----~~----------------- 441 (671)
... + +. ... ..
T Consensus 240 ~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 319 (853)
T 2fsf_A 240 RQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYI 319 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccce
Confidence 310 0 00 000 00
Q ss_pred ----------------------------h---------------------hhhhhhcceEEEEeccCCHHHHHHHHHhcC
Q 038133 442 ----------------------------E---------------------LDEKRIYRTTYMFSATMPPAVERLARKYLR 472 (671)
Q Consensus 442 ----------------------------~---------------------~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~ 472 (671)
. ..-...|..+.+||+|.......+...|--
T Consensus 320 V~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l 399 (853)
T 2fsf_A 320 VKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKL 399 (853)
T ss_dssp -------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCC
T ss_pred eecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCC
Confidence 0 000112334445555555544444444432
Q ss_pred CCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCH
Q 038133 473 NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQ 550 (671)
Q Consensus 473 ~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~ 550 (671)
.++.+++..+....-.+.+++.....|+..|..++... .+.|+||||+|+..++.|+..|...|+++.++||++.+
T Consensus 400 --~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~ 477 (853)
T 2fsf_A 400 --DTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHA 477 (853)
T ss_dssp --EEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHH
T ss_pred --cEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhH
Confidence 23444443332222223455667888999999888653 47799999999999999999999999999999999988
Q ss_pred HHHHHHHHHhhcCCCcEEEecccccccCCCCCC-------------------------------------cEEEEcCCCC
Q 038133 551 EQREISLEGFRTKRYNVLVATDVAGRGIDIPDV-------------------------------------AHVINYDMPG 593 (671)
Q Consensus 551 ~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v-------------------------------------~~VI~~d~p~ 593 (671)
.++..+...|+.| .|+|||++++||+||+.. .+||+|+.|.
T Consensus 478 rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pe 555 (853)
T 2fsf_A 478 NEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHE 555 (853)
T ss_dssp HHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCS
T ss_pred HHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCC
Confidence 8888888899888 699999999999999874 6999999999
Q ss_pred CHHHHHHHhcccCCCCCccEEEEEecCCCch
Q 038133 594 NIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624 (671)
Q Consensus 594 s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~ 624 (671)
|...|.||+||+||.|.+|.+++|++.+|.-
T Consensus 556 s~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 556 SRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp SHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred CHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 9999999999999999999999999988843
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-44 Score=422.34 Aligned_cols=336 Identities=24% Similarity=0.330 Sum_probs=267.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCe
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPL-GLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPY 329 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~-il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~ 329 (671)
.+|++++|++.+.+.+...||..|+|+|.++++. +..+++++++||||||||++|.++++..+.. .+.+
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~~ 77 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK----------NGGK 77 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH----------SCSE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH----------CCCe
Confidence 4699999999999999999999999999999999 7789999999999999999999999988753 4789
Q ss_pred EEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 330 AVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 330 vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
++|++|+++||.|++..+..+ ..+|+++..++|+....+.. ...++|+|+||++|...+.+....++++++|||||
T Consensus 78 il~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECS
T ss_pred EEEEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEec
Confidence 999999999999999998544 45689999999987755432 23789999999999998887766689999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccce
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i 489 (671)
+|.+.+.++...+..++..++ ..+++++|||+++. ..++. |+..+.+............+
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~------------------~~~ii~lSATl~n~-~~~~~-~l~~~~~~~~~r~~~l~~~~ 213 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAK------------------RRNLLALSATISNY-KQIAK-WLGAEPVATNWRPVPLIEGV 213 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHH------------------TSEEEEEESCCTTH-HHHHH-HHTCEEEECCCCSSCEEEEE
T ss_pred hhhcCCcccchHHHHHHHhcc------------------cCcEEEEcCCCCCH-HHHHH-HhCCCccCCCCCCCCceEEE
Confidence 999988889888888887765 36899999999853 45554 44433221111111000000
Q ss_pred --------eEEEEEec--------cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcC---------------
Q 038133 490 --------SQHVVMMK--------ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLG--------------- 538 (671)
Q Consensus 490 --------~~~~~~~~--------~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~--------------- 538 (671)
...+.+.. .......+.+++. .++++||||++++.|+.++..|....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 291 (715)
T 2va8_A 214 IYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILK 291 (715)
T ss_dssp EEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHH
T ss_pred EecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Confidence 00111111 1334444555543 47899999999999999999998642
Q ss_pred ---------------------CeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE----cC---
Q 038133 539 ---------------------YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YD--- 590 (671)
Q Consensus 539 ---------------------~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~----~d--- 590 (671)
..+..+||+|++++|..+++.|++|..+|||||+++++|||+|++++||+ ||
T Consensus 292 ~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~ 371 (715)
T 2va8_A 292 QLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKI 371 (715)
T ss_dssp HHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC-------
T ss_pred HHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccC
Confidence 35899999999999999999999999999999999999999999999998 99
Q ss_pred ----CCCCHHHHHHHhcccCCCC--CccEEEEEecCCC
Q 038133 591 ----MPGNIEMYTHRIGRTGRAG--KTGVATTFLTFHD 622 (671)
Q Consensus 591 ----~p~s~~~y~QriGR~gR~G--~~g~ai~~~~~~d 622 (671)
.|.|..+|.||+|||||.| ..|.|+.+++..+
T Consensus 372 ~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 372 AGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp -------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 8999999999999999998 4799999987665
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.5e-45 Score=426.77 Aligned_cols=365 Identities=21% Similarity=0.239 Sum_probs=285.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPL-GLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 252 ~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~-il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
+|+++++++.+.+.+...||..|+|+|.++++. ++.+++++++||||||||++|.+|++..+.. .++++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~~~ 71 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT----------QGGKA 71 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH----------HCSEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh----------CCCEE
Confidence 588899999999999999999999999999998 8899999999999999999999999988753 37899
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEccc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEA 410 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEa 410 (671)
||++|+++||.|++..+.++. .+|+++..++|+...... ...+++|+|+||++|...+.+....++++++|||||+
T Consensus 72 l~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEI 147 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETG
T ss_pred EEEcCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECC
Confidence 999999999999999996554 468999999998765433 2346899999999998888876666889999999999
Q ss_pred chhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCcccccee
Q 038133 411 DRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELIS 490 (671)
Q Consensus 411 h~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~ 490 (671)
|++.++++...+..++..++. ..+++++|||+++. ..++. |+..+.+. ....... +.
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~-----------------~~~ii~lSATl~n~-~~~~~-~l~~~~~~---~~~rp~~-l~ 204 (720)
T 2zj8_A 148 HLIGSRDRGATLEVILAHMLG-----------------KAQIIGLSATIGNP-EELAE-WLNAELIV---SDWRPVK-LR 204 (720)
T ss_dssp GGGGCTTTHHHHHHHHHHHBT-----------------TBEEEEEECCCSCH-HHHHH-HTTEEEEE---CCCCSSE-EE
T ss_pred cccCCCcccHHHHHHHHHhhc-----------------CCeEEEEcCCcCCH-HHHHH-HhCCcccC---CCCCCCc-ce
Confidence 999998999999998888763 37899999999863 44444 44432211 1111111 11
Q ss_pred EE------EEEec-----cchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc----------------------
Q 038133 491 QH------VVMMK-----ESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL---------------------- 537 (671)
Q Consensus 491 ~~------~~~~~-----~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~---------------------- 537 (671)
.. +.+.. ...+...+.+++. .++++||||++++.|+.++..|...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~ 282 (720)
T 2zj8_A 205 RGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEE 282 (720)
T ss_dssp EEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCS
T ss_pred EEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhc
Confidence 11 11111 2334455555554 3789999999999999999998753
Q ss_pred -----------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE----cC----CCCCHHHH
Q 038133 538 -----------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YD----MPGNIEMY 598 (671)
Q Consensus 538 -----------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~----~d----~p~s~~~y 598 (671)
...+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.++.+|
T Consensus 283 ~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~ 362 (720)
T 2zj8_A 283 NPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEV 362 (720)
T ss_dssp CHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHH
T ss_pred ccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHH
Confidence 124899999999999999999999999999999999999999999999998 76 58999999
Q ss_pred HHHhcccCCCC--CccEEEEEecCCCchHHHHHHHHHHhcCCCCC------hhHHhchhccCCCCCC
Q 038133 599 THRIGRTGRAG--KTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP------PELAKHEASKFKPGTI 657 (671)
Q Consensus 599 ~QriGR~gR~G--~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp------~~L~~~~~~~~~~g~i 657 (671)
.||+|||||.| ..|.|+++++..+. .+.+..++.....++. ..|..+..+....|++
T Consensus 363 ~Qr~GRaGR~g~~~~G~~~~l~~~~~~--~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~ 427 (720)
T 2zj8_A 363 HQMLGRAGRPKYDEVGEGIIVSTSDDP--REVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGY 427 (720)
T ss_dssp HHHHTTBCCTTTCSEEEEEEECSSSCH--HHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCCCCCCCceEEEEecCccH--HHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCC
Confidence 99999999998 57999999988772 2223344433222222 1466666655555544
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-45 Score=440.88 Aligned_cols=347 Identities=19% Similarity=0.191 Sum_probs=273.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
..|..+++++.+...+...++..|+|+|.+||+.++.|+++|++||||||||++|++|++..+. .++++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-----------~g~rv 230 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------NKQRV 230 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-----------TTCEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-----------cCCeE
Confidence 3566667777666666666777899999999999999999999999999999999999998874 57899
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEccc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEA 410 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEa 410 (671)
||++||++||.|++..+.+++. .+..++|+.+. ..+++|+|+||++|.+.+.+....+.++++||||||
T Consensus 231 lvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEa 299 (1108)
T 3l9o_A 231 IYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEV 299 (1108)
T ss_dssp EEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETG
T ss_pred EEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhh
Confidence 9999999999999999988754 56778887763 346899999999999999888777899999999999
Q ss_pred chhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHH--HHHHHHHhcCCCeEEEECCCCccccc
Q 038133 411 DRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPA--VERLARKYLRNPVVVTIGTAGKATEL 488 (671)
Q Consensus 411 h~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~--~~~l~~~~l~~p~~i~i~~~~~~~~~ 488 (671)
|+|.+++|...+..++..++. ..++++||||+|.. +..+...+...|..+.........
T Consensus 300 H~l~d~~rg~~~e~ii~~l~~-----------------~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p-- 360 (1108)
T 3l9o_A 300 HYMRDKERGVVWEETIILLPD-----------------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP-- 360 (1108)
T ss_dssp GGTTSHHHHHHHHHHHHHSCT-----------------TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC--
T ss_pred hhccccchHHHHHHHHHhcCC-----------------CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc--
Confidence 999999999999999998875 58999999998875 335566666666655544332211
Q ss_pred eeEEEEE---------ecc----------------------------------------------chhHHHHHHHHHHhC
Q 038133 489 ISQHVVM---------MKE----------------------------------------------SEKFSRLQRLLDELG 513 (671)
Q Consensus 489 i~~~~~~---------~~~----------------------------------------------~~k~~~L~~ll~~~~ 513 (671)
+...+.. +.. ..+...+...+....
T Consensus 361 l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~ 440 (1108)
T 3l9o_A 361 LQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKK 440 (1108)
T ss_dssp EEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTT
T ss_pred ceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcC
Confidence 1111110 000 222333444555556
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCe---------------------------------------EEEecCCCCHHHHH
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKLGYR---------------------------------------VTTLHGGKSQEQRE 554 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~~~~---------------------------------------v~~lhg~~~~~~R~ 554 (671)
..++||||+++..|+.++..|...++. +..+||+|++.+|+
T Consensus 441 ~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 441 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 779999999999999999998654322 79999999999999
Q ss_pred HHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCC--------CCCHHHHHHHhcccCCCC--CccEEEEEecCCCch
Q 038133 555 ISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM--------PGNIEMYTHRIGRTGRAG--KTGVATTFLTFHDTD 624 (671)
Q Consensus 555 ~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~--------p~s~~~y~QriGR~gR~G--~~g~ai~~~~~~d~~ 624 (671)
.++..|++|.++|||||+++++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.|++++.+...
T Consensus 521 ~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~- 599 (1108)
T 3l9o_A 521 VIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME- 599 (1108)
T ss_dssp HHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCC-
T ss_pred HHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcC-
Confidence 9999999999999999999999999999999997765 347888999999999999 67888888876532
Q ss_pred HHHHHHHHHHhcCCCC
Q 038133 625 VFYDLKQMLIQSNSPV 640 (671)
Q Consensus 625 ~~~~l~~~l~~~~~~v 640 (671)
...+..++.....++
T Consensus 600 -~~~~~~l~~~~~~~L 614 (1108)
T 3l9o_A 600 -PQVAKGMVKGQADRL 614 (1108)
T ss_dssp -HHHHHHHHHCCCCCC
T ss_pred -HHHHHHHhcCCCccc
Confidence 334555555444433
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.2e-45 Score=416.33 Aligned_cols=333 Identities=19% Similarity=0.246 Sum_probs=209.2
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 270 GYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 270 g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
+...|+|+|.++|+.++.++++|+++|||||||++|++|++..+...+ ...++++||||||++|+.|+.+.+.+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc------ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999999886532 12378899999999999999999999
Q ss_pred HHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc-ccCCccEEEEcccchhhccCChHHHH-HHHH
Q 038133 350 FAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA-VLNQCNYVVLDEADRMIDMGFEPQVV-GVLD 427 (671)
Q Consensus 350 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~-~l~~~~~vViDEah~~~~~~f~~~i~-~il~ 427 (671)
++...++++..++|+.+.......+..+++|+|+||++|.+.+..... .+.++++|||||||++.+++....+. .++.
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 157 (556)
T 4a2p_A 78 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 157 (556)
T ss_dssp HHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHH
T ss_pred HhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHH
Confidence 999899999999999987776666777899999999999999988776 78999999999999998876433331 2221
Q ss_pred h-CCCCCCCCCCchhhhhhhhhcceEEEEeccCCHH-----------HHHHH------------------HHhcCCCeEE
Q 038133 428 A-MPSSNLKPENEDEELDEKRIYRTTYMFSATMPPA-----------VERLA------------------RKYLRNPVVV 477 (671)
Q Consensus 428 ~-l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~-----------~~~l~------------------~~~l~~p~~i 477 (671)
. +.. .....+++++|||++.. +..+. ..|...|...
T Consensus 158 ~~~~~--------------~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (556)
T 4a2p_A 158 QKFNS--------------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEID 223 (556)
T ss_dssp HHHCC-----------------CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEE
T ss_pred hhhcc--------------cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceE
Confidence 1 111 01147899999998531 11111 1222223222
Q ss_pred EECCCCccccce---------------------eE----------------EE---------------------------
Q 038133 478 TIGTAGKATELI---------------------SQ----------------HV--------------------------- 493 (671)
Q Consensus 478 ~i~~~~~~~~~i---------------------~~----------------~~--------------------------- 493 (671)
............ .. .+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (556)
T 4a2p_A 224 VRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI 303 (556)
T ss_dssp EEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHH
T ss_pred EEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 211110000000 00 00
Q ss_pred --------------------------------------------------------------EEeccchhHHHHHHHHHH
Q 038133 494 --------------------------------------------------------------VMMKESEKFSRLQRLLDE 511 (671)
Q Consensus 494 --------------------------------------------------------------~~~~~~~k~~~L~~ll~~ 511 (671)
.......|...|.++|..
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~ 383 (556)
T 4a2p_A 304 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 383 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHH
Confidence 000024567777777764
Q ss_pred ----hCCCcEEEEecChhhHHHHHHHHHHc------------CCeEEEecCCCCHHHHHHHHHHhhc-CCCcEEEecccc
Q 038133 512 ----LGDKTAIVFVNTKKNADMVAKNLDKL------------GYRVTTLHGGKSQEQREISLEGFRT-KRYNVLVATDVA 574 (671)
Q Consensus 512 ----~~~~~iIVF~~~~~~~~~l~~~L~~~------------~~~v~~lhg~~~~~~R~~~l~~F~~-g~~~VLVaT~~~ 574 (671)
..+.++||||+++..++.+++.|... |..+..+||+|++.+|..+++.|++ |.++|||||+++
T Consensus 384 ~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~ 463 (556)
T 4a2p_A 384 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVA 463 (556)
T ss_dssp HHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC--
T ss_pred HhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCch
Confidence 35789999999999999999999875 5566677889999999999999999 999999999999
Q ss_pred cccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCch
Q 038133 575 GRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624 (671)
Q Consensus 575 ~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~ 624 (671)
++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.|++|++..+.+
T Consensus 464 ~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 464 DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp ---------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred hcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999999999999 999 789999999887654
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.8e-44 Score=408.44 Aligned_cols=337 Identities=22% Similarity=0.243 Sum_probs=236.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.|+|+|.++++.++.++++|+++|||+|||++|++|++..+...+ ...++++||||||++|+.|+++.+.+++.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------CGQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc------cCCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999999999887532 12378899999999999999999999999
Q ss_pred hcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc-ccCCccEEEEcccchhhccCChH-HHHHHHHhCC
Q 038133 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA-VLNQCNYVVLDEADRMIDMGFEP-QVVGVLDAMP 430 (671)
Q Consensus 353 ~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~-~l~~~~~vViDEah~~~~~~f~~-~i~~il~~l~ 430 (671)
..++++..++|+.+.......+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.+... .+...+....
T Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 78 RLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKL 157 (555)
T ss_dssp TTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHT
T ss_pred cCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhh
Confidence 889999999999987776666777899999999999999988766 68899999999999998765322 2222222211
Q ss_pred CCCCCCCCchhhhhhhhhcceEEEEeccCCHH--------HH---HHHH------------------HhcCCCeEEEECC
Q 038133 431 SSNLKPENEDEELDEKRIYRTTYMFSATMPPA--------VE---RLAR------------------KYLRNPVVVTIGT 481 (671)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~--------~~---~l~~------------------~~l~~p~~i~i~~ 481 (671)
..... ...+++++|||++.. .. .+.. .|...|.......
T Consensus 158 ~~~~~------------~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 225 (555)
T 3tbk_A 158 GESRD------------PLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKV 225 (555)
T ss_dssp SSCCS------------CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEEC
T ss_pred ccccC------------CCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEe
Confidence 11000 146899999999542 11 1111 1111222111111
Q ss_pred CCccccceeE--------------------------------------E-------------------------------
Q 038133 482 AGKATELISQ--------------------------------------H------------------------------- 492 (671)
Q Consensus 482 ~~~~~~~i~~--------------------------------------~------------------------------- 492 (671)
.......... .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (555)
T 3tbk_A 226 ASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTS 305 (555)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHH
T ss_pred cCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH
Confidence 1000000000 0
Q ss_pred ----------------------------------------------------------EEEeccchhHHHHHHHHHHh--
Q 038133 493 ----------------------------------------------------------VVMMKESEKFSRLQRLLDEL-- 512 (671)
Q Consensus 493 ----------------------------------------------------------~~~~~~~~k~~~L~~ll~~~-- 512 (671)
........|...|..+|...
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 385 (555)
T 3tbk_A 306 HLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH 385 (555)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhc
Confidence 00001245667777777653
Q ss_pred --CCCcEEEEecChhhHHHHHHHHHHcC------------CeEEEecCCCCHHHHHHHHHHhhc-CCCcEEEeccccccc
Q 038133 513 --GDKTAIVFVNTKKNADMVAKNLDKLG------------YRVTTLHGGKSQEQREISLEGFRT-KRYNVLVATDVAGRG 577 (671)
Q Consensus 513 --~~~~iIVF~~~~~~~~~l~~~L~~~~------------~~v~~lhg~~~~~~R~~~l~~F~~-g~~~VLVaT~~~~~G 577 (671)
.++++||||+++..++.++..|...+ .....+||+|++.+|..+++.|++ |.++|||||+++++|
T Consensus 386 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~G 465 (555)
T 3tbk_A 386 LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEG 465 (555)
T ss_dssp HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCC
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcC
Confidence 46899999999999999999998863 345556679999999999999999 999999999999999
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHH
Q 038133 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629 (671)
Q Consensus 578 iDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l 629 (671)
||+|+|++||+||+|+|+..|+||+|| ||. +.|.|++|+++.+....+.+
T Consensus 466 lDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 466 IDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp EETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999 999 89999999998876655555
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.5e-45 Score=425.54 Aligned_cols=338 Identities=19% Similarity=0.256 Sum_probs=266.7
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCe
Q 038133 252 NWAEGK--LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPY 329 (671)
Q Consensus 252 ~f~e~~--l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~ 329 (671)
+|++++ |++.+.+.+...||..|+|+|.++++.++++++++++||||||||++|.++++..+. .+++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-----------~~~~ 70 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-----------KGGK 70 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-----------TTCC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-----------hCCc
Confidence 466777 999999999999999999999999999999999999999999999999999998875 3678
Q ss_pred EEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 330 AVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 330 vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
+||++|+++||.|+++.+.++ ..+|+++..++|+....+. ...+++|+|+||++|...+.+....++++++|||||
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE 146 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDE 146 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETT
T ss_pred EEEEeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEee
Confidence 999999999999999999644 4468999999998765443 124789999999999998887766689999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccce
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i 489 (671)
+|.+.++++...+..++..+... ....+++++|||+++ ...++. ++..+.+............+
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~--------------~~~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~r~~~l~~~~ 210 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRRM--------------NKALRVIGLSATAPN-VTEIAE-WLDADYYVSDWRPVPLVEGV 210 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHH--------------CTTCEEEEEECCCTT-HHHHHH-HTTCEEEECCCCSSCEEEEE
T ss_pred eeecCCCCcccHHHHHHHHHHhc--------------CcCceEEEECCCcCC-HHHHHH-HhCCCcccCCCCCccceEEE
Confidence 99999988888888877665311 114789999999986 455554 45543322111111100000
Q ss_pred --eEEEEEeccc-------hhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHc-----------------------
Q 038133 490 --SQHVVMMKES-------EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKL----------------------- 537 (671)
Q Consensus 490 --~~~~~~~~~~-------~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~----------------------- 537 (671)
...+.+.... .....+.+.+. .++++||||++++.|+.++..|...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (702)
T 2p6r_A 211 LCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS 288 (702)
T ss_dssp ECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHH
T ss_pred eeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccccc
Confidence 0011111111 14555555554 4789999999999999999988753
Q ss_pred -------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE----cC---CCCCHHHHHHHhc
Q 038133 538 -------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YD---MPGNIEMYTHRIG 603 (671)
Q Consensus 538 -------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~----~d---~p~s~~~y~QriG 603 (671)
+..+..+||+|++++|..+++.|++|..+|||||+++++|||+|++++||+ || .|.|..+|.||+|
T Consensus 289 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~G 368 (702)
T 2p6r_A 289 RKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAG 368 (702)
T ss_dssp HHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHT
T ss_pred HHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhh
Confidence 245888999999999999999999999999999999999999999999998 66 6889999999999
Q ss_pred ccCCCC--CccEEEEEecCCC
Q 038133 604 RTGRAG--KTGVATTFLTFHD 622 (671)
Q Consensus 604 R~gR~G--~~g~ai~~~~~~d 622 (671)
|+||.| ..|.|+++++..+
T Consensus 369 RaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 369 RAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp TBSCTTTCSCEEEEEECCGGG
T ss_pred hcCCCCCCCCceEEEEecCcc
Confidence 999998 4799999998766
No 27
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.7e-45 Score=425.49 Aligned_cols=346 Identities=20% Similarity=0.249 Sum_probs=228.5
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 263 LRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 263 ~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
..++..+||..|+|+|.++++.++.|+++|+++|||+|||++|++|++..+...+ ...++++|||+||++|+.|
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------~~~~~~~lvl~Pt~~L~~Q 76 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QGQKGKVVFFANQIPVYEQ 76 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------TTCCCCEEEECSSHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc------cCCCCeEEEEECCHHHHHH
Confidence 3456778999999999999999999999999999999999999999998886532 1234789999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc-ccCCccEEEEcccchhhccCChHH
Q 038133 343 IEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA-VLNQCNYVVLDEADRMIDMGFEPQ 421 (671)
Q Consensus 343 i~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~-~l~~~~~vViDEah~~~~~~f~~~ 421 (671)
+.+.+.+++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+......
T Consensus 77 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~ 156 (696)
T 2ykg_A 77 NKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNM 156 (696)
T ss_dssp HHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred HHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHH
Confidence 9999999998889999999999876666666667899999999999999988766 688999999999999875542111
Q ss_pred -HHHHHHh-CCCCCCCCCCchhhhhhhhhcceEEEEeccCC-------HH-HHHHHH---------------------Hh
Q 038133 422 -VVGVLDA-MPSSNLKPENEDEELDEKRIYRTTYMFSATMP-------PA-VERLAR---------------------KY 470 (671)
Q Consensus 422 -i~~il~~-l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~-------~~-~~~l~~---------------------~~ 470 (671)
+...+.. +... . ....+++++|||+. .. ...+.. .+
T Consensus 157 i~~~~l~~~~~~~-~------------~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~ 223 (696)
T 2ykg_A 157 IMFNYLDQKLGGS-S------------GPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQV 223 (696)
T ss_dssp HHHHHHHHHHTTC-C------------SCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHH
T ss_pred HHHHHHHHhhccc-C------------CCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhh
Confidence 1112221 1100 0 01468999999987 11 111111 11
Q ss_pred cCCCeEEEECCCCccc----------------------------------------------------------------
Q 038133 471 LRNPVVVTIGTAGKAT---------------------------------------------------------------- 486 (671)
Q Consensus 471 l~~p~~i~i~~~~~~~---------------------------------------------------------------- 486 (671)
...|............
T Consensus 224 ~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (696)
T 2ykg_A 224 VYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES 303 (696)
T ss_dssp SCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHH
T ss_pred cCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhh
Confidence 2222221111000000
Q ss_pred -----------------------------------------------cceeEEEEE----------------eccchhHH
Q 038133 487 -----------------------------------------------ELISQHVVM----------------MKESEKFS 503 (671)
Q Consensus 487 -----------------------------------------------~~i~~~~~~----------------~~~~~k~~ 503 (671)
..+.+.+.. .....|..
T Consensus 304 ~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~ 383 (696)
T 2ykg_A 304 RICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 383 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 000000000 01455778
Q ss_pred HHHHHHHHh----CCCcEEEEecChhhHHHHHHHHHHcC----CeEEEe--------cCCCCHHHHHHHHHHhhc-CCCc
Q 038133 504 RLQRLLDEL----GDKTAIVFVNTKKNADMVAKNLDKLG----YRVTTL--------HGGKSQEQREISLEGFRT-KRYN 566 (671)
Q Consensus 504 ~L~~ll~~~----~~~~iIVF~~~~~~~~~l~~~L~~~~----~~v~~l--------hg~~~~~~R~~~l~~F~~-g~~~ 566 (671)
.|..++... .++++||||+++..++.+++.|...+ +.+..+ ||+|++.+|..+++.|++ |.++
T Consensus 384 ~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~ 463 (696)
T 2ykg_A 384 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 463 (696)
T ss_dssp HHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCS
T ss_pred HHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc
Confidence 888888765 57899999999999999999999987 788888 559999999999999998 9999
Q ss_pred EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHH
Q 038133 567 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629 (671)
Q Consensus 567 VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l 629 (671)
|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.|++|++..+......+
T Consensus 464 vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 464 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 99999999999999999999999999999999999999 998 78999999987776444444
No 28
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.2e-43 Score=402.82 Aligned_cols=336 Identities=19% Similarity=0.244 Sum_probs=260.1
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 268 RVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 268 ~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
.+|+ .|+|+|..++|.+++|+ |+.++||+|||++|++|++...+ .|+.++||+||++||.|+++++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL-----------~g~~v~VvTpTreLA~Qdae~m 172 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL-----------AGNGVHIVTVNDYLAKRDSEWM 172 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT-----------TTSCEEEEESSHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH-----------hCCCeEEEeCCHHHHHHHHHHH
Confidence 4788 99999999999999997 99999999999999999976543 3678999999999999999999
Q ss_pred HHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhc------ccccCCccEEEEcccchhh-cc---
Q 038133 348 VKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERR------YAVLNQCNYVVLDEADRMI-DM--- 416 (671)
Q Consensus 348 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~------~~~l~~~~~vViDEah~~~-~~--- 416 (671)
..++..+|+++.+++||.+..... ...+|+|+||||++| +++|..+ ...+..+.++||||||+|+ |.
T Consensus 173 ~~l~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeart 250 (922)
T 1nkt_A 173 GRVHRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEART 250 (922)
T ss_dssp HHHHHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGS
T ss_pred HHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcc
Confidence 999999999999999998865443 334799999999999 7888664 3567899999999999998 43
Q ss_pred ------------CChHHHHHHHHhCCCCC------------------------------CCCCCc----hh---------
Q 038133 417 ------------GFEPQVVGVLDAMPSSN------------------------------LKPENE----DE--------- 441 (671)
Q Consensus 417 ------------~f~~~i~~il~~l~~~~------------------------------~~~~~~----~~--------- 441 (671)
+|...+..|+..++... +..... ..
T Consensus 251 PLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l 330 (922)
T 1nkt_A 251 PLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKEL 330 (922)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHH
T ss_pred ceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHH
Confidence 57788999999987210 000000 00
Q ss_pred ------------------------------------hh---------------------hhhhhcceEEEEeccCCHHHH
Q 038133 442 ------------------------------------EL---------------------DEKRIYRTTYMFSATMPPAVE 464 (671)
Q Consensus 442 ------------------------------------~~---------------------~~~~~~~q~i~~SAT~~~~~~ 464 (671)
.+ .-...|..+.+||+|......
T Consensus 331 ~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~ 410 (922)
T 1nkt_A 331 FSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAA 410 (922)
T ss_dssp CCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHH
Confidence 00 001112334444455444444
Q ss_pred HHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEE
Q 038133 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVT 542 (671)
Q Consensus 465 ~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~ 542 (671)
.+...|-. .++.++...+....-...+++.....|+..|...+... .+.|+||||+++..++.|+..|...|+++.
T Consensus 411 Ef~~iY~l--~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~ 488 (922)
T 1nkt_A 411 ELHEIYKL--GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHN 488 (922)
T ss_dssp HHHHHHCC--EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHhCC--CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 44433322 12333332221111112344556777898888888653 467999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCC---------------------------------------
Q 038133 543 TLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV--------------------------------------- 583 (671)
Q Consensus 543 ~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v--------------------------------------- 583 (671)
++||++.+.++..+...|+.| .|+|||++++||+||+.+
T Consensus 489 vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (922)
T 1nkt_A 489 VLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEE 566 (922)
T ss_dssp EECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 999998887877777888877 699999999999999975
Q ss_pred -------------cEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 584 -------------AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 584 -------------~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
.+||+|+.|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 567 ~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 567 ASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998875
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.3e-43 Score=426.58 Aligned_cols=328 Identities=20% Similarity=0.281 Sum_probs=265.6
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 268 RVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 268 ~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
.+|| .|+|+|.++||.++.|+|++++||||||||++|+++++..+. .++++|||+||++||.|+++.+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----------~~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----------cCCeEEEEechHHHHHHHHHHH
Confidence 3678 699999999999999999999999999999988888877762 5889999999999999999999
Q ss_pred HHHHhhcCcEEEEEECCCch---HHHHHHHhcC-CeEEEEcchHHHHHHhhcccccCCccEEEEcccch----------h
Q 038133 348 VKFAHYLGIKVVSIVGGQSI---EEQGFRIRQG-CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR----------M 413 (671)
Q Consensus 348 ~k~~~~~~i~v~~~~gg~~~---~~~~~~l~~~-~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~----------~ 413 (671)
.+++ ..++++..++|+.+. ..+...+..+ ++|+|+||++|.+.+.. +.+.++++|||||||+ |
T Consensus 142 ~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~ 218 (1104)
T 4ddu_A 142 QKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTL 218 (1104)
T ss_dssp HTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHH
T ss_pred HHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhh
Confidence 9977 778999999999987 6666677776 99999999999888764 5678999999999975 4
Q ss_pred hc-cCChHH-HHHHHHhCCC----CCCCCCCchhhhhhhhhcceEEEEecc-CCHHHH-HHHHHhcCCCeEEEECCCCcc
Q 038133 414 ID-MGFEPQ-VVGVLDAMPS----SNLKPENEDEELDEKRIYRTTYMFSAT-MPPAVE-RLARKYLRNPVVVTIGTAGKA 485 (671)
Q Consensus 414 ~~-~~f~~~-i~~il~~l~~----~~~~~~~~~~~~~~~~~~~q~i~~SAT-~~~~~~-~l~~~~l~~p~~i~i~~~~~~ 485 (671)
++ +||... +..++..++. ..+. .....|+++|||| +|..+. .+...++. +.+......
T Consensus 219 L~~~gf~~~~i~~il~~l~~~~~~~~~~----------~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~ 284 (1104)
T 4ddu_A 219 LMMVGIPEEIIRKAFSTIKQGKIYERPK----------NLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSV 284 (1104)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTSCCCCCS----------SCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCC
T ss_pred hHhcCCCHHHHHHHHHhcccchhhhhhc----------cCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCC
Confidence 45 899988 7888877651 0000 0015899999999 454443 23333333 233333334
Q ss_pred ccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEE-EecCCCCHHHHHHHHHHhhcCC
Q 038133 486 TELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVT-TLHGGKSQEQREISLEGFRTKR 564 (671)
Q Consensus 486 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~-~lhg~~~~~~R~~~l~~F~~g~ 564 (671)
...+.+.+... .+...|..++... ++++||||+++..|+.++..|...|+.+. .+||. |.. ++.|++|+
T Consensus 285 ~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~ 354 (1104)
T 4ddu_A 285 ARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGK 354 (1104)
T ss_dssp CCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTS
T ss_pred cCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCC
Confidence 45565555444 5677778888774 58999999999999999999999999998 99992 455 99999999
Q ss_pred CcEEEe----cccccccCCCCC-CcEEEEcCCCC----------------------------------------------
Q 038133 565 YNVLVA----TDVAGRGIDIPD-VAHVINYDMPG---------------------------------------------- 593 (671)
Q Consensus 565 ~~VLVa----T~~~~~GiDIp~-v~~VI~~d~p~---------------------------------------------- 593 (671)
++|||| |+++++|||+|+ |++|||||+|.
T Consensus 355 ~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~ 434 (1104)
T 4ddu_A 355 INILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQ 434 (1104)
T ss_dssp CSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCH
T ss_pred CCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999 999999999999 99999999998
Q ss_pred --------------------------CHHHHHHHhcccCCCCCcc--EEEEEecCCCchHHHHHHHHHH
Q 038133 594 --------------------------NIEMYTHRIGRTGRAGKTG--VATTFLTFHDTDVFYDLKQMLI 634 (671)
Q Consensus 594 --------------------------s~~~y~QriGR~gR~G~~g--~ai~~~~~~d~~~~~~l~~~l~ 634 (671)
++.+|+||+|||||.|..| .+++++..+|...+..|.+.+.
T Consensus 435 ~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 435 KEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999999965432 3444445589999999999886
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-43 Score=417.81 Aligned_cols=336 Identities=18% Similarity=0.233 Sum_probs=215.3
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 268 RVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 268 ~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
..|+..|+|+|.++|+.++.|+++|+++|||||||++|++|++..+...+ ...++++||||||++|+.|+...+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~------~~~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc------ccCCCeEEEEeCCHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999887532 123788999999999999999999
Q ss_pred HHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc-ccCCccEEEEcccchhhccCChHHHH-HH
Q 038133 348 VKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA-VLNQCNYVVLDEADRMIDMGFEPQVV-GV 425 (671)
Q Consensus 348 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~-~l~~~~~vViDEah~~~~~~f~~~i~-~i 425 (671)
.+++...++++..++|+.+.......+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.+....+. .+
T Consensus 317 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~ 396 (797)
T 4a2q_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 396 (797)
T ss_dssp HHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHH
T ss_pred HHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHH
Confidence 99999889999999999987777677778899999999999999987766 68899999999999998765322221 22
Q ss_pred HHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCH-----------HHHHHH------------------HHhcCCCeE
Q 038133 426 LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP-----------AVERLA------------------RKYLRNPVV 476 (671)
Q Consensus 426 l~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~-----------~~~~l~------------------~~~l~~p~~ 476 (671)
+...... .....+++++|||++. .+..+. ..|+..|..
T Consensus 397 ~~~~~~~-------------~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~ 463 (797)
T 4a2q_A 397 LEQKFNS-------------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEI 463 (797)
T ss_dssp HHHHHTT-------------CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCC
T ss_pred HHHhhcc-------------CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCce
Confidence 2211000 0114789999999852 122211 122233322
Q ss_pred EEECCCCccccc------------------------e--eEEEE------------------------------------
Q 038133 477 VTIGTAGKATEL------------------------I--SQHVV------------------------------------ 494 (671)
Q Consensus 477 i~i~~~~~~~~~------------------------i--~~~~~------------------------------------ 494 (671)
............ + .....
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 543 (797)
T 4a2q_A 464 DVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALF 543 (797)
T ss_dssp EEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 211111000000 0 00000
Q ss_pred ----------------------------------------------------------------EeccchhHHHHHHHHH
Q 038133 495 ----------------------------------------------------------------MMKESEKFSRLQRLLD 510 (671)
Q Consensus 495 ----------------------------------------------------------------~~~~~~k~~~L~~ll~ 510 (671)
......|...|..+|.
T Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~ 623 (797)
T 4a2q_A 544 ICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILD 623 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHH
Confidence 0002446667777776
Q ss_pred H----hCCCcEEEEecChhhHHHHHHHHHHc------------CCeEEEecCCCCHHHHHHHHHHhhc-CCCcEEEeccc
Q 038133 511 E----LGDKTAIVFVNTKKNADMVAKNLDKL------------GYRVTTLHGGKSQEQREISLEGFRT-KRYNVLVATDV 573 (671)
Q Consensus 511 ~----~~~~~iIVF~~~~~~~~~l~~~L~~~------------~~~v~~lhg~~~~~~R~~~l~~F~~-g~~~VLVaT~~ 573 (671)
. ..+.++||||+++..++.+++.|... |..+..+||+|++.+|..+++.|++ |.++|||||++
T Consensus 624 ~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~ 703 (797)
T 4a2q_A 624 DAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 703 (797)
T ss_dssp HHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC
T ss_pred HHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCc
Confidence 5 35789999999999999999999873 5667778999999999999999999 99999999999
Q ss_pred ccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCch
Q 038133 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624 (671)
Q Consensus 574 ~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~ 624 (671)
+++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.|++|++..+..
T Consensus 704 ~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp -------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 9999999999999999999999999999999 999 899999999876543
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.1e-44 Score=432.27 Aligned_cols=335 Identities=21% Similarity=0.275 Sum_probs=268.8
Q ss_pred HHH-HHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 264 RAV-ERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 264 ~~i-~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
+.+ ..+||. | |+|.++||.++.|+|+|++||||||||+ |++|++..+.. .++++|||+||++||.|
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----------TSCCEEEEESCHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----------cCCeEEEEeccHHHHHH
Confidence 444 347999 9 9999999999999999999999999998 88888887753 57899999999999999
Q ss_pred HHHHHHHHHhhcCc----EEEEEECCCchHHH---HHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc
Q 038133 343 IEEETVKFAHYLGI----KVVSIVGGQSIEEQ---GFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 343 i~~~~~k~~~~~~i----~v~~~~gg~~~~~~---~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~ 415 (671)
+++.+.+++..+++ .+..++|+.+...+ ...+.. ++|+|+||++|.+.+.+ ++++++|||||||+|++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh
Confidence 99999999998888 89999999987663 334445 99999999999988765 67999999999999998
Q ss_pred cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEE
Q 038133 416 MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVM 495 (671)
Q Consensus 416 ~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~ 495 (671)
+...+..++..+....... ....+...|+++||||+++. ..++..++.++..+.+.........+.+.+.
T Consensus 190 --~~~~~~~i~~~lgf~~~~~------~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~- 259 (1054)
T 1gku_B 190 --ASKNVDKLLHLLGFHYDLK------TKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV- 259 (1054)
T ss_dssp --STHHHHHHHHHTTEEEETT------TTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE-
T ss_pred --ccccHHHHHHHhCcchhhh------hhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe-
Confidence 5677888887764210000 00012257899999999987 5444444444444444443334444555444
Q ss_pred eccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEe----c
Q 038133 496 MKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVA----T 571 (671)
Q Consensus 496 ~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVa----T 571 (671)
...+...|..++... ++++||||+++..|+.++..|... +.+..+||++. .+++.|++|.++|||| |
T Consensus 260 --~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~T 330 (1054)
T 1gku_B 260 --NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYY 330 (1054)
T ss_dssp --SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC--
T ss_pred --chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCC
Confidence 456677777888765 678999999999999999999988 99999999984 6889999999999999 9
Q ss_pred ccccccCCCCCC-cEEEEcCCC----------------------------------------------------------
Q 038133 572 DVAGRGIDIPDV-AHVINYDMP---------------------------------------------------------- 592 (671)
Q Consensus 572 ~~~~~GiDIp~v-~~VI~~d~p---------------------------------------------------------- 592 (671)
+++++|||+|+| ++||++|+|
T Consensus 331 dv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (1054)
T 1gku_B 331 GTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQ 410 (1054)
T ss_dssp ----CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCS
T ss_pred CeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999996 999999999
Q ss_pred -------------CCHHHHHHHhcccCCCCCcc--EEEEEecCCCchHHHHHHHHHHh
Q 038133 593 -------------GNIEMYTHRIGRTGRAGKTG--VATTFLTFHDTDVFYDLKQMLIQ 635 (671)
Q Consensus 593 -------------~s~~~y~QriGR~gR~G~~g--~ai~~~~~~d~~~~~~l~~~l~~ 635 (671)
.++.+|+||+||+||.|..| .+++|+..++...+..|.+.+..
T Consensus 411 ~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 411 AKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp CSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988776 48888988999999999998875
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-42 Score=411.91 Aligned_cols=312 Identities=20% Similarity=0.242 Sum_probs=254.7
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 268 RVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 268 ~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
.++|. |+|+|.+||+.++.+++++++||||||||++|.++++..+. .+.++||++||++|+.|++..+
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-----------~g~rvL~l~PtkaLa~Q~~~~l 149 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------NKQRVIYTSPIKALSNQKYREL 149 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCEEEEEESSHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-----------cCCeEEEECChHHHHHHHHHHH
Confidence 35674 99999999999999999999999999999999999988774 5789999999999999999999
Q ss_pred HHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHH
Q 038133 348 VKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLD 427 (671)
Q Consensus 348 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~ 427 (671)
.+++. .+..++|+.+.. .+++|+|+||++|.+.+.+....+.++++|||||||+|.++++...+..++.
T Consensus 150 ~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 150 LAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETII 218 (1010)
T ss_dssp HHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred HHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHH
Confidence 88764 677788877643 3589999999999999888777789999999999999999999999988988
Q ss_pred hCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHH--HHHHHhcCCCeEEEECCCCccccceeEEEEE---------e
Q 038133 428 AMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE--RLARKYLRNPVVVTIGTAGKATELISQHVVM---------M 496 (671)
Q Consensus 428 ~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~--~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~---------~ 496 (671)
.++. ..+++++|||++...+ .+.......+..+........ .+.+.+.. +
T Consensus 219 ~l~~-----------------~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~~ 279 (1010)
T 2xgj_A 219 LLPD-----------------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVV 279 (1010)
T ss_dssp HSCT-----------------TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSS--CEEEEEEETTSSCCEEEE
T ss_pred hcCC-----------------CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEEecCCcceeeee
Confidence 8865 5889999999987533 333333455655544432211 12222211 0
Q ss_pred cc----------------------------------------------chhHHHHHHHHHHhCCCcEEEEecChhhHHHH
Q 038133 497 KE----------------------------------------------SEKFSRLQRLLDELGDKTAIVFVNTKKNADMV 530 (671)
Q Consensus 497 ~~----------------------------------------------~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l 530 (671)
.. ......+...+......++||||+++..|+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~l 359 (1010)
T 2xgj_A 280 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 359 (1010)
T ss_dssp CTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHH
Confidence 00 11223345555555567999999999999999
Q ss_pred HHHHHHcCC---------------------------------------eEEEecCCCCHHHHHHHHHHhhcCCCcEEEec
Q 038133 531 AKNLDKLGY---------------------------------------RVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571 (671)
Q Consensus 531 ~~~L~~~~~---------------------------------------~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT 571 (671)
+..|...++ .+..+||+|++.+|+.+++.|++|.++|||||
T Consensus 360 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT 439 (1010)
T 2xgj_A 360 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 439 (1010)
T ss_dssp HHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 999876443 27899999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEE----cCC----CCCHHHHHHHhcccCCCCC--ccEEEEEecCC
Q 038133 572 DVAGRGIDIPDVAHVIN----YDM----PGNIEMYTHRIGRTGRAGK--TGVATTFLTFH 621 (671)
Q Consensus 572 ~~~~~GiDIp~v~~VI~----~d~----p~s~~~y~QriGR~gR~G~--~g~ai~~~~~~ 621 (671)
+++++|||+|++++||+ ||. |.|+.+|+||+||+||.|. .|.|++++++.
T Consensus 440 ~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 440 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp GGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred hHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 99999999999999999 998 8899999999999999997 49999999865
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.4e-42 Score=418.21 Aligned_cols=321 Identities=21% Similarity=0.234 Sum_probs=255.3
Q ss_pred CCHHHHHHH-HHcCCCCCcHHHHHHHHHHhC----CC--cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 258 LTPELLRAV-ERVGYKNPSPIQMAAIPLGLQ----QR--DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 258 l~~~i~~~i-~~~g~~~p~~~Q~~ai~~il~----~r--d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
.+......+ ..++| .|||+|.+||+.++. ++ ++|++||||||||++|+++++..+. .++++
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-----------~g~~v 655 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----------NHKQV 655 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-----------TTCEE
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-----------hCCeE
Confidence 344444444 44567 479999999999986 66 8999999999999999999988764 57899
Q ss_pred EEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHH---HHhc-CCeEEEEcchHHHHHHhhcccccCCccEEE
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGF---RIRQ-GCEVVIATPGRLIDCLERRYAVLNQCNYVV 406 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vV 406 (671)
+|+|||++||.|+++.+.+++..+++++..++|+.+..+... .+.. .++|+|+||+.|. ....+.++++||
T Consensus 656 lvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvI 730 (1151)
T 2eyq_A 656 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLI 730 (1151)
T ss_dssp EEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEE
T ss_pred EEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEE
Confidence 999999999999999999998888999999998877655432 3444 4999999998763 234588999999
Q ss_pred EcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccc
Q 038133 407 LDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKAT 486 (671)
Q Consensus 407 iDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~ 486 (671)
|||||++ ......++..++. ..++++||||+++....++...+.++..+..... ..
T Consensus 731 iDEaH~~-----g~~~~~~l~~l~~-----------------~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r 786 (1151)
T 2eyq_A 731 VDEEHRF-----GVRHKERIKAMRA-----------------NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RR 786 (1151)
T ss_dssp EESGGGS-----CHHHHHHHHHHHT-----------------TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BC
T ss_pred EechHhc-----ChHHHHHHHHhcC-----------------CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--Cc
Confidence 9999995 3334445544433 4789999999999888887777766554433222 22
Q ss_pred cceeEEEEEeccchhHHHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHc--CCeEEEecCCCCHHHHHHHHHHhhcC
Q 038133 487 ELISQHVVMMKESEKFSRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKL--GYRVTTLHGGKSQEQREISLEGFRTK 563 (671)
Q Consensus 487 ~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~l~~F~~g 563 (671)
..+...+..... ......++... .+++++||||++..++.+++.|... ++.+..+||+|++.+|+.++..|++|
T Consensus 787 ~~i~~~~~~~~~---~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g 863 (1151)
T 2eyq_A 787 LAVKTFVREYDS---MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ 863 (1151)
T ss_dssp BCEEEEEEECCH---HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT
T ss_pred cccEEEEecCCH---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC
Confidence 233333333222 22233333333 3789999999999999999999988 88999999999999999999999999
Q ss_pred CCcEEEecccccccCCCCCCcEEEEcCC-CCCHHHHHHHhcccCCCCCccEEEEEecCCC
Q 038133 564 RYNVLVATDVAGRGIDIPDVAHVINYDM-PGNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622 (671)
Q Consensus 564 ~~~VLVaT~~~~~GiDIp~v~~VI~~d~-p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d 622 (671)
+++|||||+++++|||+|++++||+++. ++++.+|+||+||+||.|+.|.||+++++.+
T Consensus 864 ~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 864 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp SCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999999999999999999999988 5799999999999999999999999987653
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.3e-42 Score=381.77 Aligned_cols=321 Identities=22% Similarity=0.270 Sum_probs=250.0
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.|+|+|.++++.++.+ ++|+++|||+|||++++++++..+.. .+.++||+||+++|+.||.+++.+++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----------~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----------YGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----------SCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 7999999999999999 99999999999999999999887752 578899999999999999999998764
Q ss_pred hcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCC
Q 038133 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432 (671)
Q Consensus 353 ~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~ 432 (671)
..+..+..++|+....... .+..+++|+|+||+.|...+......+.++++|||||||++.+......+...+.....
T Consensus 78 ~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~- 155 (494)
T 1wp9_A 78 LPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK- 155 (494)
T ss_dssp SCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS-
T ss_pred cchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCC-
Confidence 3344888889988766543 33456899999999999998877777899999999999999765444444444433222
Q ss_pred CCCCCCchhhhhhhhhcceEEEEeccCCHHH---HHHHHHhcCCCeEEEECCCCc-ccc-----ceeEEEEE--------
Q 038133 433 NLKPENEDEELDEKRIYRTTYMFSATMPPAV---ERLARKYLRNPVVVTIGTAGK-ATE-----LISQHVVM-------- 495 (671)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~---~~l~~~~l~~p~~i~i~~~~~-~~~-----~i~~~~~~-------- 495 (671)
..+++++|||++... ..+...+...+. ........ ... ........
T Consensus 156 ----------------~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (494)
T 1wp9_A 156 ----------------NPLVIGLTASPGSTPEKIMEVINNLGIEHI-EYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEV 218 (494)
T ss_dssp ----------------SCCEEEEESCSCSSHHHHHHHHHHTTCCEE-EECCTTSTTTGGGCCCCCEEEEEECCCHHHHHH
T ss_pred ----------------CCeEEEEecCCCCCcHHHHHHHHhcChhee-eccCCCcHHHHHhcCCCceeEEecCCcHHHHHH
Confidence 467999999997432 333332221111 11110000 000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 038133 496 -------------------------------------------------------------------------------- 495 (671)
Q Consensus 496 -------------------------------------------------------------------------------- 495 (671)
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (494)
T 1wp9_A 219 RKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALR 298 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHH
Confidence
Q ss_pred ----------------------------------------eccchhHHHHHHHHHH----hCCCcEEEEecChhhHHHHH
Q 038133 496 ----------------------------------------MKESEKFSRLQRLLDE----LGDKTAIVFVNTKKNADMVA 531 (671)
Q Consensus 496 ----------------------------------------~~~~~k~~~L~~ll~~----~~~~~iIVF~~~~~~~~~l~ 531 (671)
.....|...|.+++.. ..+.++||||+++..++.++
T Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~ 378 (494)
T 1wp9_A 299 AYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIV 378 (494)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHH
Confidence 0234466777777776 35889999999999999999
Q ss_pred HHHHHcCCeEEEecC--------CCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhc
Q 038133 532 KNLDKLGYRVTTLHG--------GKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIG 603 (671)
Q Consensus 532 ~~L~~~~~~v~~lhg--------~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriG 603 (671)
+.|...|+.+..+|| +++..+|..+++.|++|.++|||||+++++|||+|++++||+||+|+++..|.||+|
T Consensus 379 ~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~G 458 (494)
T 1wp9_A 379 NELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRG 458 (494)
T ss_dssp HHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHT
T ss_pred HHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHh
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEecCCCch
Q 038133 604 RTGRAGKTGVATTFLTFHDTD 624 (671)
Q Consensus 604 R~gR~G~~g~ai~~~~~~d~~ 624 (671)
|+||.|+ |.++.|++..+.+
T Consensus 459 R~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 459 RTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp TSCSCCC-SEEEEEEETTSHH
T ss_pred hccCCCC-ceEEEEEecCCHH
Confidence 9999998 9999999987643
No 35
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.3e-42 Score=411.31 Aligned_cols=335 Identities=19% Similarity=0.239 Sum_probs=214.5
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 268 RVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 268 ~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
-.|+..|+|+|.++|+.++.|+++|+++|||+|||++|++|++..+...+ ...++++|||+||++|+.|++..+
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~------~~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC------SSCCCCEEEECSSHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc------ccCCCeEEEEeCCHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999988775421 123788999999999999999999
Q ss_pred HHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc-ccCCccEEEEcccchhhccCChHHHH-HH
Q 038133 348 VKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA-VLNQCNYVVLDEADRMIDMGFEPQVV-GV 425 (671)
Q Consensus 348 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~-~l~~~~~vViDEah~~~~~~f~~~i~-~i 425 (671)
.+++...++++..++|+.+...+...+..+++|+|+||++|.+.+..... .+.++++|||||||++...+....+. .+
T Consensus 317 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~ 396 (936)
T 4a2w_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 396 (936)
T ss_dssp HHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHH
Confidence 99999889999999999987776666777899999999999999987766 68899999999999998765322221 22
Q ss_pred HHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCH-----------HHHHHH------------------HHhcCCCeE
Q 038133 426 LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP-----------AVERLA------------------RKYLRNPVV 476 (671)
Q Consensus 426 l~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~-----------~~~~l~------------------~~~l~~p~~ 476 (671)
+...... .....+++++|||++. .+..+. ..++..|..
T Consensus 397 ~~~~~~~-------------~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~ 463 (936)
T 4a2w_A 397 LEQKFNS-------------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEI 463 (936)
T ss_dssp HHHHHTT-------------CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCE
T ss_pred HHHhhcc-------------CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcc
Confidence 2211000 0114789999999852 111111 123333332
Q ss_pred EEECCCCccccc------------------------e--eEEEE------------------------------------
Q 038133 477 VTIGTAGKATEL------------------------I--SQHVV------------------------------------ 494 (671)
Q Consensus 477 i~i~~~~~~~~~------------------------i--~~~~~------------------------------------ 494 (671)
............ + .....
T Consensus 464 ~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~ 543 (936)
T 4a2w_A 464 DVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALF 543 (936)
T ss_dssp EEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred eEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 222111000000 0 00000
Q ss_pred ----------------------------------------------------------------EeccchhHHHHHHHHH
Q 038133 495 ----------------------------------------------------------------MMKESEKFSRLQRLLD 510 (671)
Q Consensus 495 ----------------------------------------------------------------~~~~~~k~~~L~~ll~ 510 (671)
......|...|.++|.
T Consensus 544 ~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~ 623 (936)
T 4a2w_A 544 ICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILD 623 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHH
Confidence 0002446667777777
Q ss_pred Hh----CCCcEEEEecChhhHHHHHHHHHHc------------CCeEEEecCCCCHHHHHHHHHHhhc-CCCcEEEeccc
Q 038133 511 EL----GDKTAIVFVNTKKNADMVAKNLDKL------------GYRVTTLHGGKSQEQREISLEGFRT-KRYNVLVATDV 573 (671)
Q Consensus 511 ~~----~~~~iIVF~~~~~~~~~l~~~L~~~------------~~~v~~lhg~~~~~~R~~~l~~F~~-g~~~VLVaT~~ 573 (671)
.. .+.++||||+++..++.+++.|... |..+..+||+|++.+|..+++.|++ |.++|||||++
T Consensus 624 ~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~ 703 (936)
T 4a2w_A 624 DAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 703 (936)
T ss_dssp HTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC
T ss_pred HHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCc
Confidence 63 4689999999999999999999986 5666777999999999999999999 99999999999
Q ss_pred ccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 574 ~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
+++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.|++|++..+.
T Consensus 704 ~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp ------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred hhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999999999999999999999999 999 78999999987654
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.9e-42 Score=397.27 Aligned_cols=323 Identities=21% Similarity=0.249 Sum_probs=246.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEE
Q 038133 260 PELLRAVERVGYKNPSPIQMAAIPLGLQQ------RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVM 333 (671)
Q Consensus 260 ~~i~~~i~~~g~~~p~~~Q~~ai~~il~~------rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil 333 (671)
..+...+..++| .||++|.++|+.++.+ .+++++||||||||++|++|++..+. .|.+++|+
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~-----------~g~qvlvl 423 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE-----------AGFQTAFM 423 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH-----------HTSCEEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCeEEEE
Confidence 344455688999 9999999999999865 58999999999999999999998874 47899999
Q ss_pred ecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHH---HHHhcC-CeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 334 APTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQG---FRIRQG-CEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 334 ~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~---~~l~~~-~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
+||++||.|+++.+.+++..+++++..++|+.+..+.. ..+..+ ++|+|+||+.|.+ ...+.++++|||||
T Consensus 424 aPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 424 VPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDE 498 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEES
T ss_pred eCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecc
Confidence 99999999999999999998899999999998876543 334444 9999999998754 34588999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccce
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i 489 (671)
+|++.... ...+... ....++++||||+++....+ .+..+.....+.........+
T Consensus 499 aHr~g~~q--------r~~l~~~--------------~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i 554 (780)
T 1gm5_A 499 QHRFGVKQ--------REALMNK--------------GKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEV 554 (780)
T ss_dssp CCCC-------------CCCCSS--------------SSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCC
T ss_pred cchhhHHH--------HHHHHHh--------------CCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcce
Confidence 99962211 0111111 11478999999998865543 334443333333222212222
Q ss_pred eEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecCh--------hhHHHHHHHHHH---cCCeEEEecCCCCHHHHHHH
Q 038133 490 SQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTK--------KNADMVAKNLDK---LGYRVTTLHGGKSQEQREIS 556 (671)
Q Consensus 490 ~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~--------~~~~~l~~~L~~---~~~~v~~lhg~~~~~~R~~~ 556 (671)
... +....+...+...+... .+.+++|||+.+ ..++.+++.|.. .++.+..+||+|++.+|+.+
T Consensus 555 ~~~---~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v 631 (780)
T 1gm5_A 555 QTM---LVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRV 631 (780)
T ss_dssp EEC---CCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHH
T ss_pred EEE---EeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHH
Confidence 211 12223344454555432 377899999976 457888888887 37889999999999999999
Q ss_pred HHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCC-CHHHHHHHhcccCCCCCccEEEEEecCCCchHH
Q 038133 557 LEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVF 626 (671)
Q Consensus 557 l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~ 626 (671)
++.|++|+++|||||+++++|||+|++++||+++.|. +...|.||+||+||.|+.|.|++++++.+....
T Consensus 632 ~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~ 702 (780)
T 1gm5_A 632 MLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAM 702 (780)
T ss_dssp HHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHH
T ss_pred HHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHH
Confidence 9999999999999999999999999999999999996 789999999999999999999999985444333
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.4e-42 Score=402.82 Aligned_cols=334 Identities=20% Similarity=0.275 Sum_probs=227.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH-HHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI-EEETVKFA 351 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi-~~~~~k~~ 351 (671)
.|+|+|.++++.++.|+++|+++|||+|||++|++|++..+...+ ....++++|||+||++|+.|+ .+.+.+++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKK-----KASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHH-----HHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcc-----ccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999999999998876421 112347899999999999999 99999987
Q ss_pred hhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHH------hhcccccCCccEEEEcccchhhccCChHHHHH-
Q 038133 352 HYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL------ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG- 424 (671)
Q Consensus 352 ~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l------~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~- 424 (671)
.. ++++..++|+.........+..+++|+|+||++|.+.+ ......+..+++|||||||++...++...+..
T Consensus 82 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~ 160 (699)
T 4gl2_A 82 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 160 (699)
T ss_dssp TT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHH
T ss_pred Cc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHH
Confidence 65 58999999998777666666678999999999999888 34446688999999999999865443333222
Q ss_pred HHHhC-CCCCCCCCCchhhhhhhhhcceEEEEeccCCHH-----------HHHHHHH------------------hcCCC
Q 038133 425 VLDAM-PSSNLKPENEDEELDEKRIYRTTYMFSATMPPA-----------VERLARK------------------YLRNP 474 (671)
Q Consensus 425 il~~l-~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~-----------~~~l~~~------------------~l~~p 474 (671)
++... ....... .........+++++|||++.. +..+... +...|
T Consensus 161 ~l~~~~~~~~~~~-----~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p 235 (699)
T 4gl2_A 161 YLMQKLKNNRLKK-----ENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP 235 (699)
T ss_dssp HHHHHHHHHHHHC---------CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC
T ss_pred HHHhhhccccccc-----ccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC
Confidence 22110 0000000 000000146899999999862 1222111 12222
Q ss_pred eEEEECCCCccc------------------------cce----eE-----------------------------------
Q 038133 475 VVVTIGTAGKAT------------------------ELI----SQ----------------------------------- 491 (671)
Q Consensus 475 ~~i~i~~~~~~~------------------------~~i----~~----------------------------------- 491 (671)
............ ... .+
T Consensus 236 ~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (699)
T 4gl2_A 236 CKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIND 315 (699)
T ss_dssp EEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 211110000000 000 00
Q ss_pred -------------------------------EEEEe--------------------------ccchhHHHHHHHHHH---
Q 038133 492 -------------------------------HVVMM--------------------------KESEKFSRLQRLLDE--- 511 (671)
Q Consensus 492 -------------------------------~~~~~--------------------------~~~~k~~~L~~ll~~--- 511 (671)
....+ ....|...|..+|..
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~ 395 (699)
T 4gl2_A 316 TIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT 395 (699)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 00000 011222233344433
Q ss_pred -hC-CCcEEEEecChhhHHHHHHHHHHc------CCeEEEecCC--------CCHHHHHHHHHHhhcCCCcEEEeccccc
Q 038133 512 -LG-DKTAIVFVNTKKNADMVAKNLDKL------GYRVTTLHGG--------KSQEQREISLEGFRTKRYNVLVATDVAG 575 (671)
Q Consensus 512 -~~-~~~iIVF~~~~~~~~~l~~~L~~~------~~~v~~lhg~--------~~~~~R~~~l~~F~~g~~~VLVaT~~~~ 575 (671)
.+ ++++||||+++..++.+++.|... |+.+..+||+ |++.+|..+++.|++|.++|||||++++
T Consensus 396 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~ 475 (699)
T 4gl2_A 396 RTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAE 475 (699)
T ss_dssp HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCC
T ss_pred cCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Confidence 23 789999999999999999999987 8999999999 9999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecC
Q 038133 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620 (671)
Q Consensus 576 ~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~ 620 (671)
+|||+|+|++||+||+|+|+..|+||+||+||.| .+++++..
T Consensus 476 ~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 476 EGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp TTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred cCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 9999999999999999999999999999977655 44444444
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.4e-40 Score=397.25 Aligned_cols=309 Identities=20% Similarity=0.217 Sum_probs=247.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
++| .|+|+|.++|+.+++|++++++||||||||++|++++...+. .++++||++||++|+.|+++.+.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------~g~~vlvl~PtraLa~Q~~~~l~ 103 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------NMTKTIYTSPIKALSNQKFRDFK 103 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----------TTCEEEEEESCGGGHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----------cCCeEEEEeCCHHHHHHHHHHHH
Confidence 356 589999999999999999999999999999999999887653 57899999999999999999988
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHh
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 428 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~ 428 (671)
+++. ++.+..++|+.+.. ..++|+|+||++|.+.+......+.++++|||||||++.++++...+..++..
T Consensus 104 ~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 104 ETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp TTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred HHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 8653 67888899987633 34799999999999999887777899999999999999999999999999988
Q ss_pred CCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhc---CCCeEEEECCCCccccceeEEEE-----------
Q 038133 429 MPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYL---RNPVVVTIGTAGKATELISQHVV----------- 494 (671)
Q Consensus 429 l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l---~~p~~i~i~~~~~~~~~i~~~~~----------- 494 (671)
++. ..+++++|||+++.. .++..+. ..+..+...... .. .+.+.+.
T Consensus 175 l~~-----------------~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r-~~-pl~~~v~~~~~~~~~~~~ 234 (997)
T 4a4z_A 175 LPQ-----------------HVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR-PV-PLEINIWAKKELIPVINQ 234 (997)
T ss_dssp SCT-----------------TCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC-SS-CEEEEEEETTEEEEEECT
T ss_pred ccc-----------------CCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCC-Cc-cceEEEecCCcchhcccc
Confidence 875 588999999998654 3443332 122222211111 10 0111100
Q ss_pred --------------------------------------------------------------------------------
Q 038133 495 -------------------------------------------------------------------------------- 494 (671)
Q Consensus 495 -------------------------------------------------------------------------------- 494 (671)
T Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 314 (997)
T 4a4z_A 235 NSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFF 314 (997)
T ss_dssp TCCBCHHHHHHHHHHHC---------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred --EeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCC---------------------------------
Q 038133 495 --MMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGY--------------------------------- 539 (671)
Q Consensus 495 --~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~--------------------------------- 539 (671)
......+...+...+......++||||++++.|+.++..|...++
T Consensus 315 ~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l 394 (997)
T 4a4z_A 315 TQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKT 394 (997)
T ss_dssp --CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHH
T ss_pred cccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHH
Confidence 001223455677777776778999999999999999999977655
Q ss_pred ------eEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCC---------CHHHHHHHhcc
Q 038133 540 ------RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG---------NIEMYTHRIGR 604 (671)
Q Consensus 540 ------~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~---------s~~~y~QriGR 604 (671)
.+..+||+|++.+|+.+++.|.+|.++|||||+++++|||+|+ .+||+++.+. |+..|+||+||
T Consensus 395 ~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GR 473 (997)
T 4a4z_A 395 RSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGR 473 (997)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGG
T ss_pred HHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcc
Confidence 5799999999999999999999999999999999999999999 5555555554 99999999999
Q ss_pred cCCCC--CccEEEEEec
Q 038133 605 TGRAG--KTGVATTFLT 619 (671)
Q Consensus 605 ~gR~G--~~g~ai~~~~ 619 (671)
|||.| ..|.|++++.
T Consensus 474 AGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 474 AGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp GCCTTTCSSEEEEEECC
T ss_pred cccCCCCcceEEEEecC
Confidence 99998 5677877774
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.2e-40 Score=414.08 Aligned_cols=379 Identities=18% Similarity=0.185 Sum_probs=282.9
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGLQ-QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 257 ~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~-~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
.|.....+++...+|..++|+|.++++.++. +.+++++||||||||++|.+|++..+.. ..+.++||++|
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~---------~~~~kavyi~P 980 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ---------SSEGRCVYITP 980 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH---------CTTCCEEEECS
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh---------CCCCEEEEEcC
Confidence 3556778888888999999999999999985 5679999999999999999999999875 24678999999
Q ss_pred chhhHHHHHHHHHH-HHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhc--ccccCCccEEEEcccch
Q 038133 336 TRELAQQIEEETVK-FAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR--YAVLNQCNYVVLDEADR 412 (671)
Q Consensus 336 tr~La~Qi~~~~~k-~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~--~~~l~~~~~vViDEah~ 412 (671)
+++||.|++..+.+ |...+|++|+.++|+...... ...+++|+||||+++..++.+. ...++++++||+||+|.
T Consensus 981 ~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~ 1057 (1724)
T 4f92_B 981 MEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHL 1057 (1724)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGG
T ss_pred hHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhh
Confidence 99999999999876 556689999999998764332 3356899999999986666542 23478999999999998
Q ss_pred hhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCe-EEEECCCCccccceeE
Q 038133 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPV-VVTIGTAGKATELISQ 491 (671)
Q Consensus 413 ~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~-~i~i~~~~~~~~~i~~ 491 (671)
+.+ ..+..+..++..+... ........|++++|||++. .+.++...-..+. ...+.....+ ..+..
T Consensus 1058 l~d-~rg~~le~il~rl~~i----------~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RP-vpL~~ 1124 (1724)
T 4f92_B 1058 IGG-ENGPVLEVICSRMRYI----------SSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRP-VPLEL 1124 (1724)
T ss_dssp GGS-TTHHHHHHHHHHHHHH----------HHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCS-SCEEE
T ss_pred cCC-CCCccHHHHHHHHHHH----------HhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCC-CCeEE
Confidence 876 4666666665544210 0001115789999999986 4556665433332 2233332222 22333
Q ss_pred EEEEeccchhH-------HHHHHHHHH-hCCCcEEEEecChhhHHHHHHHHHHc--------------------------
Q 038133 492 HVVMMKESEKF-------SRLQRLLDE-LGDKTAIVFVNTKKNADMVAKNLDKL-------------------------- 537 (671)
Q Consensus 492 ~~~~~~~~~k~-------~~L~~ll~~-~~~~~iIVF~~~~~~~~~l~~~L~~~-------------------------- 537 (671)
++......... ..+...+.. ..++++||||++++.|+.++..|...
T Consensus 1125 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 1204 (1724)
T 4f92_B 1125 HIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLS 1204 (1724)
T ss_dssp EEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCC
T ss_pred EEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcc
Confidence 44333322221 122233333 35789999999999999988776321
Q ss_pred --------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE----cC------CCCCHHHHH
Q 038133 538 --------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YD------MPGNIEMYT 599 (671)
Q Consensus 538 --------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~----~d------~p~s~~~y~ 599 (671)
..+++.+||||++.+|..+.+.|++|.++|||||+++++|||+|...+||. || .|.++.+|.
T Consensus 1205 d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~ 1284 (1724)
T 4f92_B 1205 DSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1284 (1724)
T ss_dssp CHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHH
T ss_pred cHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHH
Confidence 346899999999999999999999999999999999999999999998883 32 356899999
Q ss_pred HHhcccCCCCC--ccEEEEEecCCCchHHHHHHHHHHhcCCCCChhHHhchhccCCCCCCCCC
Q 038133 600 HRIGRTGRAGK--TGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDR 660 (671)
Q Consensus 600 QriGR~gR~G~--~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~~~~~~~~~g~i~~~ 660 (671)
||+|||||.|. .|.|++++...+...+..+...-....|.+...|.+|.++.+..|++.++
T Consensus 1285 Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~ 1347 (1724)
T 4f92_B 1285 QMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENK 1347 (1724)
T ss_dssp HHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBH
T ss_pred HhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCH
Confidence 99999999997 69999999888776665443222223567778888899999999988765
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2e-40 Score=412.20 Aligned_cols=375 Identities=19% Similarity=0.278 Sum_probs=279.9
Q ss_pred CCCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 270 GYKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 270 g~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
||+.++++|.+++|.++ +++|++++||||||||++|.++++..+.............+.++||++|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999988 57899999999999999999999999976443332233468899999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcc--cccCCccEEEEcccchhhccCChHHHHHHH
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY--AVLNQCNYVVLDEADRMIDMGFEPQVVGVL 426 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~--~~l~~~~~vViDEah~~~~~~f~~~i~~il 426 (671)
+.+..+|++|..++|+.+..... ..+++|+||||+++..++.+.. ..++.+++|||||+|.+.+ ..+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 99999999999999987754321 3568999999999854443322 2478999999999997655 5666666655
Q ss_pred HhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCC--eEEEECCCCccccceeEEEEEeccchh---
Q 038133 427 DAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNP--VVVTIGTAGKATELISQHVVMMKESEK--- 501 (671)
Q Consensus 427 ~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p--~~i~i~~~~~~~~~i~~~~~~~~~~~k--- 501 (671)
..+.. .........|++++|||+|+ .+.++...-..+ ....++....+. .+.+.+..+.....
T Consensus 232 ~rl~~----------~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPv-pL~~~~~~~~~~~~~~~ 299 (1724)
T 4f92_B 232 ARAIR----------NIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPV-PLEQTYVGITEKKAIKR 299 (1724)
T ss_dssp HHHHH----------HHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSS-CEEEECCEECCCCHHHH
T ss_pred HHHHH----------HHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccC-ccEEEEeccCCcchhhh
Confidence 43210 00011125789999999986 455655432222 122333332222 23444433332221
Q ss_pred HHHHH----HHHHH-hCCCcEEEEecChhhHHHHHHHHHHc-------------------------------------CC
Q 038133 502 FSRLQ----RLLDE-LGDKTAIVFVNTKKNADMVAKNLDKL-------------------------------------GY 539 (671)
Q Consensus 502 ~~~L~----~ll~~-~~~~~iIVF~~~~~~~~~l~~~L~~~-------------------------------------~~ 539 (671)
...+. ..+.. ..++++||||++++.|+.+++.|.+. ..
T Consensus 300 ~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 379 (1724)
T 4f92_B 300 FQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY 379 (1724)
T ss_dssp HHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhc
Confidence 22222 22222 23679999999999999999887531 34
Q ss_pred eEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE----cCC------CCCHHHHHHHhcccCCCC
Q 038133 540 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YDM------PGNIEMYTHRIGRTGRAG 609 (671)
Q Consensus 540 ~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~----~d~------p~s~~~y~QriGR~gR~G 609 (671)
+++++||||++++|..+.+.|++|.++|||||++++.|||+|.+++||. |+. |.++.+|.||+|||||.|
T Consensus 380 Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g 459 (1724)
T 4f92_B 380 GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQ 459 (1724)
T ss_dssp TEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTT
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCC
Confidence 5899999999999999999999999999999999999999999999984 443 468999999999999988
Q ss_pred C--ccEEEEEecCCCchHHHHHHHHHHhcCCCCChhHHhchhccCCCCCCCCC
Q 038133 610 K--TGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDR 660 (671)
Q Consensus 610 ~--~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~~~~~~~~~g~i~~~ 660 (671)
. .|.++++....+...+..+...-....+.+...|.+|.++++..|++.+.
T Consensus 460 ~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~ 512 (1724)
T 4f92_B 460 YDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNA 512 (1724)
T ss_dssp TCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBH
T ss_pred CCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCH
Confidence 4 69999999998887776654432233677788899999999999988764
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=9.3e-41 Score=375.19 Aligned_cols=310 Identities=16% Similarity=0.187 Sum_probs=236.6
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
..|+|+|.+|++.++.++++++++|||||||++|+++++..+.. .++++||||||++|+.|+++.+.++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------~~~~vlvl~P~~~L~~Q~~~~~~~~~ 181 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----------YEGKILIIVPTTALTTQMADDFVDYR 181 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH----------CSSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------CCCeEEEEECcHHHHHHHHHHHHHhh
Confidence 37999999999999999999999999999999999999887753 34599999999999999999999886
Q ss_pred hhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCC
Q 038133 352 HYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 431 (671)
Q Consensus 352 ~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~ 431 (671)
...++.+..++|+.+..++ +..+++|+|+||+.|... ....+.++++|||||||++.. ..+..++..++.
T Consensus 182 ~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~ 251 (510)
T 2oca_A 182 LFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (510)
T ss_dssp SSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTT
T ss_pred cCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhccc
Confidence 6556788889998776554 456799999999987542 234577899999999999865 456667666643
Q ss_pred CCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHH-HHHhcCCCeEEEECCCCc-----c-ccceeEEEEEec-------
Q 038133 432 SNLKPENEDEELDEKRIYRTTYMFSATMPPAVERL-ARKYLRNPVVVTIGTAGK-----A-TELISQHVVMMK------- 497 (671)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l-~~~~l~~p~~i~i~~~~~-----~-~~~i~~~~~~~~------- 497 (671)
..+++++|||++.....+ ....+..+..+.+..... . ...+........
T Consensus 252 -----------------~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 314 (510)
T 2oca_A 252 -----------------CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKL 314 (510)
T ss_dssp -----------------CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHH
T ss_pred -----------------CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccc
Confidence 467999999997654321 122223333322222110 0 001111111110
Q ss_pred --------------cchhHHHHHHHHHHh---CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHh
Q 038133 498 --------------ESEKFSRLQRLLDEL---GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560 (671)
Q Consensus 498 --------------~~~k~~~L~~ll~~~---~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F 560 (671)
...+...+..++... .+.++||||+ ...++.+++.|...+..+..+||++++.+|+.+++.|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f 393 (510)
T 2oca_A 315 KGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLA 393 (510)
T ss_dssp TTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHH
Confidence 112333455555544 3455666666 8999999999999888999999999999999999999
Q ss_pred hcCCCcEEEec-ccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEec
Q 038133 561 RTKRYNVLVAT-DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619 (671)
Q Consensus 561 ~~g~~~VLVaT-~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~ 619 (671)
++|.++||||| +++++|||+|++++||++++|+++..|.|++||+||.|+.|.++++++
T Consensus 394 ~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 394 ENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred hCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999 999999999999999999999999999999999999998774555554
No 42
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.9e-39 Score=325.75 Aligned_cols=239 Identities=37% Similarity=0.654 Sum_probs=218.7
Q ss_pred ccCHHHHHHHHhhcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHH
Q 038133 224 EMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTA 303 (671)
Q Consensus 224 ~~~~~~~~~f~~~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~ 303 (671)
.++++++..|+..+.+.+.|...|.|+.+|.++++++.+++++...||..|+|+|.++|+.+++|++++++||||||||+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEE
Q 038133 304 AFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIA 383 (671)
Q Consensus 304 ~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~ 383 (671)
+|++|++..+...+... ...++++||++||++|+.|+++.+.+++...++.+..++||.+...+...+..+++|+|+
T Consensus 82 ~~~l~~l~~l~~~~~~~---~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~ 158 (242)
T 3fe2_A 82 SYLLPAIVHINHQPFLE---RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 158 (242)
T ss_dssp HHHHHHHHHHHTSCCCC---TTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHhccccc---cCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEE
Confidence 99999999887543221 235889999999999999999999999999999999999999998888888889999999
Q ss_pred cchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHH
Q 038133 384 TPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAV 463 (671)
Q Consensus 384 Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~ 463 (671)
||++|.+.+......+.++++|||||||+|.+++|...+..++..++. ..|+++||||+|+.+
T Consensus 159 Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~-----------------~~q~~~~SAT~~~~~ 221 (242)
T 3fe2_A 159 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP-----------------DRQTLMWSATWPKEV 221 (242)
T ss_dssp CHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCS-----------------SCEEEEEESCCCHHH
T ss_pred CHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCc-----------------cceEEEEEeecCHHH
Confidence 999999999888888999999999999999999999999999998865 589999999999999
Q ss_pred HHHHHHhcCCCeEEEECCC
Q 038133 464 ERLARKYLRNPVVVTIGTA 482 (671)
Q Consensus 464 ~~l~~~~l~~p~~i~i~~~ 482 (671)
..++..++.+|..+.++..
T Consensus 222 ~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 222 RQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHHCCCCEEEEecCC
Confidence 9999999999999988754
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.5e-41 Score=386.96 Aligned_cols=326 Identities=17% Similarity=0.162 Sum_probs=245.3
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 256 GKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 256 ~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
+++++.++++|... +..++|+|.+++|.++.++++|++||||||||++|++|++..+.. .++++|||+|
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----------~~~~vLvl~P 223 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----------RRLRTLILAP 223 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----------TTCCEEEEES
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----------CCCeEEEEcC
Confidence 34566666655543 578999998899999999999999999999999999999988764 5789999999
Q ss_pred chhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc
Q 038133 336 TRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 336 tr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~ 415 (671)
|++||.|+++.+. +..+. +.+... . .....+..+.++|.+.|...+... ..+.++++|||||||+| +
T Consensus 224 treLa~Qi~~~l~------~~~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~ 290 (618)
T 2whx_A 224 TRVVAAEMEEALR------GLPIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-D 290 (618)
T ss_dssp SHHHHHHHHHHTT------TSCEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-S
T ss_pred hHHHHHHHHHHhc------CCcee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-C
Confidence 9999999987765 23333 222110 0 011124567788888887666544 34889999999999998 7
Q ss_pred cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEE
Q 038133 416 MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVM 495 (671)
Q Consensus 416 ~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~ 495 (671)
.+|...+..++..++.. ..|+++||||++..+..++. .++..+.+.....
T Consensus 291 ~~~~~~~~~i~~~l~~~----------------~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~----------- 340 (618)
T 2whx_A 291 PCSVAARGYISTRVEMG----------------EAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIP----------- 340 (618)
T ss_dssp HHHHHHHHHHHHHHHHT----------------SCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCC-----------
T ss_pred ccHHHHHHHHHHHhccc----------------CccEEEEECCCchhhhhhhc---cCCceeeecccCC-----------
Confidence 77777777777665321 58999999999887543222 2333333322110
Q ss_pred eccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccc
Q 038133 496 MKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575 (671)
Q Consensus 496 ~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~ 575 (671)
..+...+...+.. ..+++||||++++.|+.+++.|...++.+..+||. +|..+++.|++|..+|||||++++
T Consensus 341 ---~~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~ 412 (618)
T 2whx_A 341 ---ERSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISE 412 (618)
T ss_dssp ---SSCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGG
T ss_pred ---HHHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHH
Confidence 0111122333433 37799999999999999999999999999999984 678899999999999999999999
Q ss_pred ccCCCCCCcEE--------------------EEcCCCCCHHHHHHHhcccCCCCC-ccEEEEEec---CCCchHHHHHHH
Q 038133 576 RGIDIPDVAHV--------------------INYDMPGNIEMYTHRIGRTGRAGK-TGVATTFLT---FHDTDVFYDLKQ 631 (671)
Q Consensus 576 ~GiDIp~v~~V--------------------I~~d~p~s~~~y~QriGR~gR~G~-~g~ai~~~~---~~d~~~~~~l~~ 631 (671)
+|||+| +++| |+|++|.+.++|+||+||+||.|. .|.|++|++ +.+...+..+..
T Consensus 413 rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~ 491 (618)
T 2whx_A 413 MGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEA 491 (618)
T ss_dssp TTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHH
T ss_pred cCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHh
Confidence 999997 8888 788889999999999999999975 899999998 788888888888
Q ss_pred HHHhcCCCCChhH
Q 038133 632 MLIQSNSPVPPEL 644 (671)
Q Consensus 632 ~l~~~~~~vp~~L 644 (671)
.+.-....+|..+
T Consensus 492 ~i~l~~~~~~~~~ 504 (618)
T 2whx_A 492 KMLLDNIYTPEGI 504 (618)
T ss_dssp HHHHTTCCCTTCC
T ss_pred HhccccccCCcch
Confidence 8766666666543
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.2e-40 Score=368.13 Aligned_cols=312 Identities=17% Similarity=0.140 Sum_probs=227.3
Q ss_pred CCCCCcHHHHHHHHHHhCCCcE-EEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 270 GYKNPSPIQMAAIPLGLQQRDV-IGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 270 g~~~p~~~Q~~ai~~il~~rd~-ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
|+.+|+|+|. +||.+++++++ +++||||||||++|++|++..+.. .++++||++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----------~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----------RRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----------cCCcEEEECCCHHHHHHHHHHhc
Confidence 7889999985 89999999887 999999999999999999887653 57899999999999999988764
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHh
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 428 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~ 428 (671)
++.+....+.... ....+..|.++|++.|...+.+. ..+.++++|||||||++ +.++...+..+...
T Consensus 70 ------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 70 ------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp ------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred ------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 3333322222111 11235679999999998887654 44889999999999987 43333322222221
Q ss_pred CCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHH
Q 038133 429 MPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRL 508 (671)
Q Consensus 429 l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 508 (671)
.. ....|+++||||+++.+..+ +..++.++.+....... . +..+...
T Consensus 137 ~~----------------~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p~~-~-------------~~~~~~~ 183 (451)
T 2jlq_A 137 VE----------------MGEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIPER-S-------------WNTGFDW 183 (451)
T ss_dssp HH----------------TTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCCSS-C-------------CSSSCHH
T ss_pred hc----------------CCCceEEEEccCCCccchhh---hcCCCceEecCccCCch-h-------------hHHHHHH
Confidence 11 11478999999998754332 33344444333111100 0 0012233
Q ss_pred HHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE
Q 038133 509 LDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588 (671)
Q Consensus 509 l~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~ 588 (671)
+.. ..+++||||++++.|+.+++.|...++.+..+||.+. ..+++.|++|..+|||||+++++|||+|+ ++||+
T Consensus 184 l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 184 ITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HHH-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEE
T ss_pred HHh-CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEE
Confidence 333 3679999999999999999999999999999999764 56899999999999999999999999999 99999
Q ss_pred cC--------------------CCCCHHHHHHHhcccCCCCC-ccEEEEEecCCC---chHHHHHHHHHHhcCCCCChhH
Q 038133 589 YD--------------------MPGNIEMYTHRIGRTGRAGK-TGVATTFLTFHD---TDVFYDLKQMLIQSNSPVPPEL 644 (671)
Q Consensus 589 ~d--------------------~p~s~~~y~QriGR~gR~G~-~g~ai~~~~~~d---~~~~~~l~~~l~~~~~~vp~~L 644 (671)
|| .|.+..+|+||+||+||.|+ .|.|++|+..++ ..+..-+...+...+..+|..+
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99 99999999999999999998 899988875432 2222222333334455666554
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1e-40 Score=367.18 Aligned_cols=290 Identities=18% Similarity=0.188 Sum_probs=205.2
Q ss_pred HHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEEC
Q 038133 284 LGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVG 363 (671)
Q Consensus 284 ~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~g 363 (671)
.+++|++++++||||||||++|++|++..+.. .++++||++||++||.|+++.+..+ + +....+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----------~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~ 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR----------RRLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQ 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTTTS----C--EEEESS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----------cCCeEEEEcchHHHHHHHHHHHhcC----C--eEEecc
Confidence 35688999999999999999999999987754 5789999999999999999877632 2 222111
Q ss_pred CCchHHHHHHHhcCCeEEEEcchHHHHHHhhccc--------ccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCC
Q 038133 364 GQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA--------VLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLK 435 (671)
Q Consensus 364 g~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~--------~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~ 435 (671)
... +|+||+++.+.+....+ .+.++++|||||+|++ +.++...+..+...++.
T Consensus 68 ~~~--------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~---- 128 (440)
T 1yks_A 68 AFS--------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA---- 128 (440)
T ss_dssp CCC--------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT----
T ss_pred cce--------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhcc----
Confidence 110 36777666544433222 3789999999999998 33333222222222211
Q ss_pred CCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCC
Q 038133 436 PENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK 515 (671)
Q Consensus 436 ~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~ 515 (671)
...|+++||||+++.+..++.. ..+..... ..+...... .+...+.. .++
T Consensus 129 ------------~~~~~l~~SAT~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~~-~~~~~l~~-~~~ 178 (440)
T 1yks_A 129 ------------NESATILMTATPPGTSDEFPHS--NGEIEDVQ--------------TDIPSEPWN-TGHDWILA-DKR 178 (440)
T ss_dssp ------------TSCEEEEECSSCTTCCCSSCCC--SSCEEEEE--------------CCCCSSCCS-SSCHHHHH-CCS
T ss_pred ------------CCceEEEEeCCCCchhhhhhhc--CCCeeEee--------------eccChHHHH-HHHHHHHh-cCC
Confidence 1478999999998875432221 11111110 011111111 12223333 368
Q ss_pred cEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE-------
Q 038133 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN------- 588 (671)
Q Consensus 516 ~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~------- 588 (671)
++||||++++.++.+++.|...++.+..+|| ++|..+++.|++|+++|||||+++++|||+| +++||+
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~p 253 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKP 253 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCcccee
Confidence 9999999999999999999999999999999 3688899999999999999999999999999 999986
Q ss_pred ------------cCCCCCHHHHHHHhcccCCC-CCccEEEEEe---cCCCchHHHHHHHHHHhcCCCCChh
Q 038133 589 ------------YDMPGNIEMYTHRIGRTGRA-GKTGVATTFL---TFHDTDVFYDLKQMLIQSNSPVPPE 643 (671)
Q Consensus 589 ------------~d~p~s~~~y~QriGR~gR~-G~~g~ai~~~---~~~d~~~~~~l~~~l~~~~~~vp~~ 643 (671)
++.|.+..+|+||+||+||. |+.|.|++|+ ++.+...+..+...+......+|..
T Consensus 254 v~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 254 VLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp EEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred eecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 89999999999999999997 6899999996 6788888888888776666666553
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.6e-39 Score=359.83 Aligned_cols=293 Identities=22% Similarity=0.263 Sum_probs=227.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.|+|+|.++++.++.++++++++|||+|||++|+.++... +.++||||||++|+.||.+.+.+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------~~~~Lvl~P~~~L~~Q~~~~~~~--- 155 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGI--- 155 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------------CSCEEEEESSHHHHHHHHHHGGG---
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEECCHHHHHHHHHHHHh---
Confidence 7999999999999999999999999999999999988653 56799999999999999888877
Q ss_pred hcCcE-EEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCC
Q 038133 353 YLGIK-VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 431 (671)
Q Consensus 353 ~~~i~-v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~ 431 (671)
+++. +..++|+.. ..++|+|+||+.|...+.. ...++++|||||||++.+.+|.. ++..++
T Consensus 156 -~~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~~- 217 (472)
T 2fwr_A 156 -FGEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI- 217 (472)
T ss_dssp -GCGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTCC-
T ss_pred -CCCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhcC-
Confidence 3788 888877765 2578999999998766542 13569999999999998877753 444443
Q ss_pred CCCCCCCchhhhhhhhhcceEEEEeccCCH-------------------HHHHHHHHhcCCCeEEEECCCCcc-------
Q 038133 432 SNLKPENEDEELDEKRIYRTTYMFSATMPP-------------------AVERLARKYLRNPVVVTIGTAGKA------- 485 (671)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~-------------------~~~~l~~~~l~~p~~i~i~~~~~~------- 485 (671)
..+++++|||++. ....+...++..+..+.+......
T Consensus 218 -----------------~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 280 (472)
T 2fwr_A 218 -----------------APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYE 280 (472)
T ss_dssp -----------------CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTT
T ss_pred -----------------CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHH
Confidence 3568999999872 233333333443332211100000
Q ss_pred -------------------ccceeEEE---------------------EEeccchhHHHHHHHHHHhCCCcEEEEecChh
Q 038133 486 -------------------TELISQHV---------------------VMMKESEKFSRLQRLLDELGDKTAIVFVNTKK 525 (671)
Q Consensus 486 -------------------~~~i~~~~---------------------~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~ 525 (671)
...+.+.+ .......|...|.+++....++++||||++..
T Consensus 281 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~ 360 (472)
T 2fwr_A 281 KREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNE 360 (472)
T ss_dssp TTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHH
T ss_pred HHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHH
Confidence 00000000 00123457788888898877899999999999
Q ss_pred hHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhccc
Q 038133 526 NADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRT 605 (671)
Q Consensus 526 ~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~ 605 (671)
.++.+++.|. +..+||+++..+|+.+++.|++|.++|||||+++++|+|+|++++||++++|+|+..|.||+||+
T Consensus 361 ~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~ 435 (472)
T 2fwr_A 361 LVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRI 435 (472)
T ss_dssp HHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHS
T ss_pred HHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhc
Confidence 9999999884 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc---cEEEEEecCCC
Q 038133 606 GRAGKT---GVATTFLTFHD 622 (671)
Q Consensus 606 gR~G~~---g~ai~~~~~~d 622 (671)
||.|+. ..+|.|++...
T Consensus 436 ~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 436 LRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp BCCCTTTCCEEEEEEEECSC
T ss_pred cCCCCCCceEEEEEEEeCCC
Confidence 999843 35555666543
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.2e-39 Score=377.97 Aligned_cols=336 Identities=16% Similarity=0.218 Sum_probs=247.8
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCccccc
Q 038133 247 PRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQ-QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325 (671)
Q Consensus 247 p~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~-~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~ 325 (671)
+.|+.+|.++++++.+.+.+...+ ..|+++|.++|+.++. +++++++||||||||+ ++|++...... ...
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~------~~~ 138 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM------PHL 138 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC------GGG
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc------ccC
Confidence 346778999999999999999988 7899999999998885 5679999999999998 45554322110 112
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEE
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYV 405 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~v 405 (671)
.++.++|++|+++||.|++..+.. .+++.+...+|+....+. ....+++|+|+|||+|...+.... .+.++++|
T Consensus 139 ~g~~ilvl~P~r~La~q~~~~l~~---~~~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~l 212 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVAQRVAE---EMDVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMEDH-DLSRYSCI 212 (773)
T ss_dssp GTCEEEEEESCHHHHHHHHHHHHH---HTTCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEE
T ss_pred CCceEEecCchHHHHHHHHHHHHH---HhCCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhCc-cccCCCEE
Confidence 367899999999999998765543 345444333332211111 112468999999999998876653 48999999
Q ss_pred EEcccch-hhccCCh-HHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCC
Q 038133 406 VLDEADR-MIDMGFE-PQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG 483 (671)
Q Consensus 406 ViDEah~-~~~~~f~-~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~ 483 (671)
||||+|. +++..+. ..+..++...+ ..++++||||++. +.+. .|+.++.++.+....
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~~------------------~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr~ 271 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRRP------------------DLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGRT 271 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHCT------------------TCEEEEEESCSCC--HHHH-HHTTSCCEEECCCCC
T ss_pred EecCccccccchHHHHHHHHHHHHhCC------------------CceEEEEeccccH--HHHH-HHhcCCCcccccCcc
Confidence 9999995 6553322 22333333322 4789999999965 3444 455544444443221
Q ss_pred ccccceeEEEEEeccchh----HHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHH-----------cCCeEEEecCCC
Q 038133 484 KATELISQHVVMMKESEK----FSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK-----------LGYRVTTLHGGK 548 (671)
Q Consensus 484 ~~~~~i~~~~~~~~~~~k----~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~-----------~~~~v~~lhg~~ 548 (671)
..+...+........ ...+..++....++++||||+++..|+.++..|.. .++.+..+||+|
T Consensus 272 ---~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l 348 (773)
T 2xau_A 272 ---YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSL 348 (773)
T ss_dssp ---CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred ---cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCC
Confidence 223333322233333 23344444444688999999999999999999985 477899999999
Q ss_pred CHHHHHHHHHHhh-----cCCCcEEEecccccccCCCCCCcEEEEcCC------------------CCCHHHHHHHhccc
Q 038133 549 SQEQREISLEGFR-----TKRYNVLVATDVAGRGIDIPDVAHVINYDM------------------PGNIEMYTHRIGRT 605 (671)
Q Consensus 549 ~~~~R~~~l~~F~-----~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~------------------p~s~~~y~QriGR~ 605 (671)
++++|..+++.|. +|..+|||||+++++|||||++++||++++ |.|..+|.||+|||
T Consensus 349 ~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRa 428 (773)
T 2xau_A 349 PPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRA 428 (773)
T ss_dssp CHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGG
T ss_pred CHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhcccc
Confidence 9999999999999 999999999999999999999999999887 88999999999999
Q ss_pred CCCCCccEEEEEecCCC
Q 038133 606 GRAGKTGVATTFLTFHD 622 (671)
Q Consensus 606 gR~G~~g~ai~~~~~~d 622 (671)
||. ..|.||.|++..+
T Consensus 429 GR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 429 GRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp GSS-SSEEEEESSCHHH
T ss_pred CCC-CCCEEEEEecHHH
Confidence 999 7999999997543
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.6e-40 Score=379.16 Aligned_cols=316 Identities=17% Similarity=0.189 Sum_probs=221.7
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHh------CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCC
Q 038133 265 AVERVGYK-----NPSPIQM-----AAIPLGL------QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP 328 (671)
Q Consensus 265 ~i~~~g~~-----~p~~~Q~-----~ai~~il------~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~ 328 (671)
+|...||. .|+|+|. ++||.++ .++++|++||||||||++|++|++..+.. .++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----------~~~ 271 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----------KRL 271 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----------TTC
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----------CCC
Confidence 45566777 8999999 9999988 89999999999999999999999988653 578
Q ss_pred eEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEc
Q 038133 329 YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLD 408 (671)
Q Consensus 329 ~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViD 408 (671)
++|||+||++||.|+++.+..+ ++. ...+.... ....+.-+-+.+.+.+...+... ..+.++++||||
T Consensus 272 ~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViD 339 (673)
T 2wv9_A 272 RTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMD 339 (673)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEE
T ss_pred cEEEEccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEe
Confidence 9999999999999998877643 332 11110000 00011223344444444333332 358899999999
Q ss_pred ccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccc
Q 038133 409 EADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATEL 488 (671)
Q Consensus 409 Eah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~ 488 (671)
|||+| +..+...+..+...++. ...|+++||||+++.+..+... ..|.. .+..
T Consensus 340 EaH~~-~~~~~~~~~~l~~~~~~----------------~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v~~------- 392 (673)
T 2wv9_A 340 EAHFT-DPASIAARGYIATRVEA----------------GEAAAIFMTATPPGTSDPFPDT--NSPVH-DVSS------- 392 (673)
T ss_dssp STTCC-CHHHHHHHHHHHHHHHT----------------TSCEEEEECSSCTTCCCSSCCC--SSCEE-EEEC-------
T ss_pred CCccc-CccHHHHHHHHHHhccc----------------cCCcEEEEcCCCChhhhhhccc--CCceE-EEee-------
Confidence 99998 22222222222222211 1578999999998764422211 11111 1110
Q ss_pred eeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEE
Q 038133 489 ISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568 (671)
Q Consensus 489 i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VL 568 (671)
.+..... ..+...+.. .++++||||++++.++.+++.|...++.+..+||. +|..+++.|++|+++||
T Consensus 393 ------~~~~~~~-~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VL 460 (673)
T 2wv9_A 393 ------EIPDRAW-SSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFV 460 (673)
T ss_dssp ------CCCSSCC-SSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEE
T ss_pred ------ecCHHHH-HHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEE
Confidence 0111111 112223333 47899999999999999999999999999999994 78899999999999999
Q ss_pred EecccccccCCCCCCcEEEE--------------------cCCCCCHHHHHHHhcccCCC-CCccEEEEEe---cCCCch
Q 038133 569 VATDVAGRGIDIPDVAHVIN--------------------YDMPGNIEMYTHRIGRTGRA-GKTGVATTFL---TFHDTD 624 (671)
Q Consensus 569 VaT~~~~~GiDIp~v~~VI~--------------------~d~p~s~~~y~QriGR~gR~-G~~g~ai~~~---~~~d~~ 624 (671)
|||+++++|||+| +++||+ |++|.+.++|+||+||+||. |+.|.|++|+ ++.+..
T Consensus 461 VaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~ 539 (673)
T 2wv9_A 461 ITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTM 539 (673)
T ss_dssp EECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTT
T ss_pred EECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHH
Confidence 9999999999999 999998 67899999999999999999 7899999996 577777
Q ss_pred HHHHHHHHHHhcCCCCCh
Q 038133 625 VFYDLKQMLIQSNSPVPP 642 (671)
Q Consensus 625 ~~~~l~~~l~~~~~~vp~ 642 (671)
.+..+...+.-....++.
T Consensus 540 ~l~~ie~~~~l~~~~~~~ 557 (673)
T 2wv9_A 540 LAHWTEAKILLDNIHLPN 557 (673)
T ss_dssp BHHHHHHHHHHHTSCBTT
T ss_pred HHHHHHHHHhhhhccCCc
Confidence 777777765444444444
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.6e-38 Score=359.18 Aligned_cols=290 Identities=21% Similarity=0.243 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.++++|.++++.+..+++++++||||||||++|++|++. .+.++||++||++||.|+++.+.+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~--------------~g~~vLVl~PTReLA~Qia~~l~~--- 279 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA--------------QGYKVLVLNPSVAATLGFGAYMSK--- 279 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH--------------TTCCEEEEESCHHHHHHHHHHHHH---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH--------------CCCeEEEEcchHHHHHHHHHHHHH---
Confidence 344556666666668889999999999999999988764 366899999999999999875544
Q ss_pred hcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCC
Q 038133 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432 (671)
Q Consensus 353 ~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~ 432 (671)
.++..+...+|+.. +..+++|+|+||++| +....+.++++++||||||| +++.+|...+..++..++..
T Consensus 280 ~~g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~ 348 (666)
T 3o8b_A 280 AHGIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETA 348 (666)
T ss_dssp HHSCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTT
T ss_pred HhCCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhc
Confidence 45677778888765 346799999999998 45556678899999999996 66788888888898888752
Q ss_pred CCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh
Q 038133 433 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL 512 (671)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~ 512 (671)
. ...++++|||+++.+. ...+....+..... .. +........ +...
T Consensus 349 ~---------------~~llil~SAT~~~~i~------~~~p~i~~v~~~~~--~~----i~~~~~~~~-------l~~~ 394 (666)
T 3o8b_A 349 G---------------ARLVVLATATPPGSVT------VPHPNIEEVALSNT--GE----IPFYGKAIP-------IEAI 394 (666)
T ss_dssp T---------------CSEEEEEESSCTTCCC------CCCTTEEEEECBSC--SS----EEETTEEEC-------GGGS
T ss_pred C---------------CceEEEECCCCCcccc------cCCcceEEEeeccc--ch----hHHHHhhhh-------hhhc
Confidence 1 1236778999987421 11222211111100 00 111111100 1223
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEE-----
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI----- 587 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI----- 587 (671)
.++++|||||+++.++.+++.|...++.+..+||++++.+ |.++..+|||||+++++|||+| +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~ 466 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTC 466 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcc
Confidence 5789999999999999999999999999999999999864 5667779999999999999997 99988
Q ss_pred -----EcC-----------CCCCHHHHHHHhcccCCCCCccEEEEEecCCCchH--H--HHHHHHHH
Q 038133 588 -----NYD-----------MPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDV--F--YDLKQMLI 634 (671)
Q Consensus 588 -----~~d-----------~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~--~--~~l~~~l~ 634 (671)
||| .|.+.++|+||+||+|| |+.|. |+|+++.+... + ..+.+...
T Consensus 467 ~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~ 531 (666)
T 3o8b_A 467 VTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYD 531 (666)
T ss_dssp EEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHH
T ss_pred cccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhc
Confidence 777 89999999999999999 99999 99999887665 3 44444443
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.9e-38 Score=347.73 Aligned_cols=281 Identities=19% Similarity=0.220 Sum_probs=203.2
Q ss_pred HHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEE
Q 038133 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSI 361 (671)
Q Consensus 282 i~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~ 361 (671)
...+..++++|++||||||||++|++|++..+.. .++++||++||++||.|+++.+. |+.+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~ 78 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQ 78 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----------TTCCEEEEECSHHHHHHHHHHTT------TSCEEEC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----------CCCcEEEECchHHHHHHHHHHhc------CceEeEE
Confidence 3445678899999999999999999999987753 57899999999999999988775 3333322
Q ss_pred ECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccch-----hhccCChHHHHHHHHhCCCCCCCC
Q 038133 362 VGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR-----MIDMGFEPQVVGVLDAMPSSNLKP 436 (671)
Q Consensus 362 ~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~-----~~~~~f~~~i~~il~~l~~~~~~~ 436 (671)
.+..... -..+.-+.++|.+.+...+... ..++++++|||||||+ ++..+|...+. ..
T Consensus 79 ~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~----~~------- 141 (459)
T 2z83_A 79 TSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV----EL------- 141 (459)
T ss_dssp C-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH----HT-------
T ss_pred ecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh----cc-------
Confidence 2221110 1234567888988887666554 3488999999999998 44444332211 11
Q ss_pred CCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCc
Q 038133 437 ENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKT 516 (671)
Q Consensus 437 ~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~ 516 (671)
...|+++||||+++.+..+... ..|........ . ......+..++... +++
T Consensus 142 -----------~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~~~--------------~-~~~~~~~~~~l~~~-~~~ 192 (459)
T 2z83_A 142 -----------GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQDEI--------------P-DRAWSSGYEWITEY-AGK 192 (459)
T ss_dssp -----------TSCEEEEECSSCTTCCCSSCCC--SSCEEEEECCC--------------C-SSCCSSCCHHHHHC-CSC
T ss_pred -----------CCccEEEEEcCCCcchhhhccC--CCCeEEecccC--------------C-cchhHHHHHHHHhc-CCC
Confidence 1579999999998764322111 23332211100 0 01111122334443 789
Q ss_pred EEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEE--------
Q 038133 517 AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN-------- 588 (671)
Q Consensus 517 iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~-------- 588 (671)
+||||+++..|+.+++.|...++.+..+||. +|..+++.|++|..+|||||+++++|||||+ ++||+
T Consensus 193 ~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~ 267 (459)
T 2z83_A 193 TVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPT 267 (459)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEE
T ss_pred EEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccc
Confidence 9999999999999999999999999999995 6778899999999999999999999999999 99999
Q ss_pred ------------cCCCCCHHHHHHHhcccCCCCC-ccEEEEEecCC--CchHHHHH
Q 038133 589 ------------YDMPGNIEMYTHRIGRTGRAGK-TGVATTFLTFH--DTDVFYDL 629 (671)
Q Consensus 589 ------------~d~p~s~~~y~QriGR~gR~G~-~g~ai~~~~~~--d~~~~~~l 629 (671)
|+.|.|..+|+||+||+||.|. .|.|++|++.. +...+..+
T Consensus 268 ~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~ 323 (459)
T 2z83_A 268 ILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHW 323 (459)
T ss_dssp EECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred cccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhh
Confidence 7799999999999999999997 89999999886 44444444
No 51
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.3e-36 Score=306.89 Aligned_cols=244 Identities=37% Similarity=0.638 Sum_probs=204.4
Q ss_pred hcCcccccCCCCC--CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 236 DFNISYKGSKIPR--PMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 236 ~~~i~~~g~~ip~--pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
++++.+.|...|. |+.+|.++++++.+++++...||..|+|+|.++|+.++.++++++++|||||||++|++|++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 4567788999888 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCCCC-cccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHH
Q 038133 314 SRLPPIS-EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL 392 (671)
Q Consensus 314 ~~~~~~~-~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l 392 (671)
....... ......++++||++||++|+.|+++.+.+++...++.+..++||.....+...+..+++|+|+||++|.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 6532110 001234679999999999999999999999988899999999999888887778889999999999999999
Q ss_pred hhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcC
Q 038133 393 ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472 (671)
Q Consensus 393 ~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~ 472 (671)
......+.++++|||||||+|.+++|...+..++..+.... ....|+++||||+++.+..++..++.
T Consensus 166 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~-------------~~~~q~l~~SAT~~~~~~~~~~~~l~ 232 (253)
T 1wrb_A 166 EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS-------------GINRQTLMFSATFPKEIQKLAADFLY 232 (253)
T ss_dssp HTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC-------------GGGCEEEEEESSCCHHHHHHHHHHCS
T ss_pred HcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC-------------CCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 88887899999999999999999999999999998653211 11478999999999999999999999
Q ss_pred CCeEEEECCCCccccceeEE
Q 038133 473 NPVVVTIGTAGKATELISQH 492 (671)
Q Consensus 473 ~p~~i~i~~~~~~~~~i~~~ 492 (671)
+|..+.++........+.|.
T Consensus 233 ~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 233 NYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp SCEEEEEC------------
T ss_pred CCEEEEECCCCCCcCCceec
Confidence 99999988776655555543
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.5e-36 Score=331.35 Aligned_cols=270 Identities=17% Similarity=0.195 Sum_probs=193.5
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCc
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQS 366 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~ 366 (671)
.|++++++||||||||++|++|++..+.. .++++||++||++||.|+++.+. ++.+...+|+..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~ 64 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQ 64 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcc
Confidence 36899999999999999999999966543 57899999999999999887664 455555555422
Q ss_pred hHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhh
Q 038133 367 IEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446 (671)
Q Consensus 367 ~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~ 446 (671)
. .-..+.-+.++|.+.+...+.. ...+.++++|||||+|++ +.++......+......
T Consensus 65 ~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~--------------- 122 (431)
T 2v6i_A 65 S-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM--------------- 122 (431)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT---------------
T ss_pred c-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC---------------
Confidence 1 1122456778899988766655 445889999999999997 43333333333332211
Q ss_pred hhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhh
Q 038133 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKN 526 (671)
Q Consensus 447 ~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~ 526 (671)
...++++||||+++.+..+... ..|.. .+.. .+ ...+...+...+... ++++||||++++.
T Consensus 123 -~~~~~l~~SAT~~~~~~~~~~~--~~~i~-~~~~-------------~~-~~~~~~~~~~~l~~~-~~~~lVF~~~~~~ 183 (431)
T 2v6i_A 123 -GDAGAIFMTATPPGTTEAFPPS--NSPII-DEET-------------RI-PDKAWNSGYEWITEF-DGRTVWFVHSIKQ 183 (431)
T ss_dssp -TSCEEEEEESSCTTCCCSSCCC--SSCCE-EEEC-------------CC-CSSCCSSCCHHHHSC-SSCEEEECSSHHH
T ss_pred -CCCcEEEEeCCCCcchhhhcCC--CCcee-eccc-------------cC-CHHHHHHHHHHHHcC-CCCEEEEeCCHHH
Confidence 1578999999998753321110 11111 1100 00 111112233444443 6789999999999
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcE-----------------EEEc
Q 038133 527 ADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAH-----------------VINY 589 (671)
Q Consensus 527 ~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~-----------------VI~~ 589 (671)
++.+++.|...++.+..+||+ +|+.+++.|++|.++|||||+++++|||+| +.+ ||++
T Consensus 184 ~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~ 258 (431)
T 2v6i_A 184 GAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQG 258 (431)
T ss_dssp HHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecc
Confidence 999999999999999999997 577899999999999999999999999999 544 6788
Q ss_pred CCCCCHHHHHHHhcccCCCCC-ccEEEEEe
Q 038133 590 DMPGNIEMYTHRIGRTGRAGK-TGVATTFL 618 (671)
Q Consensus 590 d~p~s~~~y~QriGR~gR~G~-~g~ai~~~ 618 (671)
+.|.+..+|+||+||+||.|. .|.+++|.
T Consensus 259 ~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 259 PIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 999999999999999999985 45555555
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=296.18 Aligned_cols=218 Identities=39% Similarity=0.640 Sum_probs=188.7
Q ss_pred ccCCCCCCCCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038133 242 KGSKIPRPMRNWAE-GKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPIS 320 (671)
Q Consensus 242 ~g~~ip~pi~~f~e-~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~ 320 (671)
.+..+|.|+.+|.+ +++++.+++++.+.||..|+|+|.++|+.+++|++++++||||||||++|++|++..+......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~- 88 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS- 88 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch-
Confidence 35678999999999 8999999999999999999999999999999999999999999999999999999887542211
Q ss_pred cccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccC
Q 038133 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLN 400 (671)
Q Consensus 321 ~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~ 400 (671)
.....++++||++||++||.|+++.+.++. ..++.+..++|+.....+...+..+++|+|+||++|.+.+......+.
T Consensus 89 -~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~ 166 (228)
T 3iuy_A 89 -REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLR 166 (228)
T ss_dssp -----CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCT
T ss_pred -hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcc
Confidence 112368899999999999999999999986 457899999999988888778888999999999999999988888899
Q ss_pred CccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEE
Q 038133 401 QCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTI 479 (671)
Q Consensus 401 ~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i 479 (671)
++++|||||||++.+++|...+..++..++. ..|+++||||+|+.++.++..++.+|..+.+
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~-----------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRP-----------------DRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCS-----------------SCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCc-----------------CCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999999999999999999999999998865 5899999999999999999999999988753
No 54
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=8.9e-36 Score=340.57 Aligned_cols=305 Identities=18% Similarity=0.213 Sum_probs=190.5
Q ss_pred CCCcHHHHHHHHHHhC----C-CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHH-H
Q 038133 272 KNPSPIQMAAIPLGLQ----Q-RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE-E 345 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~----~-rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~-~ 345 (671)
..|+|+|.+|++.++. + ++++++++||||||++++..+...+.. .+.. .....++++||||||++|+.|+. +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~-~~~~-~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSA-RWNR-TGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHT-TCCS-SCSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhc-cccc-ccccCCCeEEEEeCCHHHHHHHHHH
Confidence 3799999999999885 4 669999999999999976655554432 1100 01125789999999999999988 6
Q ss_pred HHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhh----cccccCCccEEEEcccchhhccCChHH
Q 038133 346 ETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER----RYAVLNQCNYVVLDEADRMIDMGFEPQ 421 (671)
Q Consensus 346 ~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~----~~~~l~~~~~vViDEah~~~~~~f~~~ 421 (671)
.+..+ +..+..+.++. ...+++|+|+||++|...+.. ..+....+++|||||||++...+ ...
T Consensus 255 ~~~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~ 321 (590)
T 3h1t_A 255 TFTPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSN 321 (590)
T ss_dssp CCTTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------
T ss_pred HHHhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHH
Confidence 66544 44444444332 235689999999999887642 22345679999999999987643 234
Q ss_pred HHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeE------------------EEECCCC
Q 038133 422 VVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVV------------------VTIGTAG 483 (671)
Q Consensus 422 i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~------------------i~i~~~~ 483 (671)
+..++..++. .++++||||+..........++..+.. +.+....
T Consensus 322 ~~~il~~~~~------------------~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 383 (590)
T 3h1t_A 322 WREILEYFEP------------------AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEV 383 (590)
T ss_dssp CHHHHHHSTT------------------SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETT
T ss_pred HHHHHHhCCc------------------ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeee
Confidence 4566666653 569999999875433323333333322 2111110
Q ss_pred ccc-------------cceeEEEEEecc-------chhHH----HHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHcC
Q 038133 484 KAT-------------ELISQHVVMMKE-------SEKFS----RLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLG 538 (671)
Q Consensus 484 ~~~-------------~~i~~~~~~~~~-------~~k~~----~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~ 538 (671)
... ..+......... ..+.. .+...+... ..+++||||+++.+|+.+++.|...+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~ 463 (590)
T 3h1t_A 384 DAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLN 463 (590)
T ss_dssp CC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred eccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhh
Confidence 000 000000000000 01112 233334433 35899999999999999999998764
Q ss_pred C--------eEEEecCCCCHHHHHHHHHHhhcCCCc---EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCC
Q 038133 539 Y--------RVTTLHGGKSQEQREISLEGFRTKRYN---VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGR 607 (671)
Q Consensus 539 ~--------~v~~lhg~~~~~~R~~~l~~F~~g~~~---VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR 607 (671)
. .+..+||.+++ +|+.+++.|++|+.+ |||||+++++|||+|++++||++++|+|+..|+||+||+||
T Consensus 464 ~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R 542 (590)
T 3h1t_A 464 SDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTR 542 (590)
T ss_dssp HHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCC
T ss_pred hhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcc
Confidence 3 27789998764 799999999998866 88999999999999999999999999999999999999999
Q ss_pred CCC
Q 038133 608 AGK 610 (671)
Q Consensus 608 ~G~ 610 (671)
.|.
T Consensus 543 ~~~ 545 (590)
T 3h1t_A 543 LRE 545 (590)
T ss_dssp CBG
T ss_pred cCc
Confidence 874
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=3e-34 Score=319.26 Aligned_cols=335 Identities=21% Similarity=0.254 Sum_probs=249.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|+ .|++.|..+.-.+.+|+ |..+.||+|||++|.+|++-..+ .|..+.|++||..||.|-.+++.
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL-----------~G~~vhVvT~ndyLA~rdae~m~ 137 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL-----------IGKGVHLVTVNDYLARRDALWMG 137 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT-----------TSSCEEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh-----------cCCceEEEeccHHHHHhHHHHHH
Confidence 455 79999998888888876 99999999999999999976554 48889999999999999999999
Q ss_pred HHHhhcCcEEEEEECC--------------------------------------------------CchHHHHHHHhcCC
Q 038133 349 KFAHYLGIKVVSIVGG--------------------------------------------------QSIEEQGFRIRQGC 378 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg--------------------------------------------------~~~~~~~~~l~~~~ 378 (671)
.++..+|++|.+++.. .+..+..... .|
T Consensus 138 ~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~ 215 (822)
T 3jux_A 138 PVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LC 215 (822)
T ss_dssp HHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HS
T ss_pred HHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cC
Confidence 9999999999999882 1111111111 48
Q ss_pred eEEEEcchHH-HHHHhhcc------cccCCccEEEEcccchhh-cc--------C-------ChHHHHHHHHhCC-----
Q 038133 379 EVVIATPGRL-IDCLERRY------AVLNQCNYVVLDEADRMI-DM--------G-------FEPQVVGVLDAMP----- 430 (671)
Q Consensus 379 ~IiI~Tp~~L-~~~l~~~~------~~l~~~~~vViDEah~~~-~~--------~-------f~~~i~~il~~l~----- 430 (671)
+|+++|..-| .|+|..+. .+...+.|.||||+|.++ |. | ....+..+...+.
T Consensus 216 DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy 295 (822)
T 3jux_A 216 DVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDF 295 (822)
T ss_dssp SEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTE
T ss_pred CCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcE
Confidence 9999999887 46665432 245678999999999764 10 0 0011111111111
Q ss_pred ------------------------CCCCCCCCc-hh--------------------------------------------
Q 038133 431 ------------------------SSNLKPENE-DE-------------------------------------------- 441 (671)
Q Consensus 431 ------------------------~~~~~~~~~-~~-------------------------------------------- 441 (671)
..++-.... ..
T Consensus 296 ~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s 375 (822)
T 3jux_A 296 TVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYS 375 (822)
T ss_dssp EECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCG
T ss_pred EEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCc
Confidence 011110000 00
Q ss_pred -----h---------------------hhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEE
Q 038133 442 -----E---------------------LDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVM 495 (671)
Q Consensus 442 -----~---------------------~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~ 495 (671)
. ..-.+.|..+.+||+|+.+....+...|-.+ ++.++...+......+.+.+
T Consensus 376 ~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnkp~~R~d~~d~vy 453 (822)
T 3jux_A 376 GGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHKPMIRKDHDDLVF 453 (822)
T ss_dssp GGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSSCCCCEECCCEEE
T ss_pred hHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCCCcceeecCcEEE
Confidence 0 0003447789999999999888887777543 55555544333333334566
Q ss_pred eccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc
Q 038133 496 MKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573 (671)
Q Consensus 496 ~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~ 573 (671)
.+...|+..+...+... .+.|+||||+++..++.++..|...|+.+.++||+..+.++..+...|+.| .|+|||++
T Consensus 454 ~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdm 531 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNM 531 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETT
T ss_pred ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcch
Confidence 77888999999988764 478999999999999999999999999999999996555555555566655 69999999
Q ss_pred ccccCCCC--------CCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 038133 574 AGRGIDIP--------DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623 (671)
Q Consensus 574 ~~~GiDIp--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~ 623 (671)
++||+||+ +..+||++++|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 532 AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 532 AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 99999998 667999999999999999999999999999999999999884
No 56
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=298.85 Aligned_cols=230 Identities=31% Similarity=0.524 Sum_probs=199.8
Q ss_pred HHHHHhhcCcccccCCCCCCCCCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHH
Q 038133 230 WRIFREDFNISYKGSKIPRPMRNWAEG----KLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 230 ~~~f~~~~~i~~~g~~ip~pi~~f~e~----~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ 305 (671)
...|+....+.+.|..+|.|+.+|+++ ++++.+++++.+.||..|+|+|.++|+.++++++++++||||||||++|
T Consensus 4 ~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 4 INFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 466888899999999999999999986 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHH-HHHhcCCeEEEEc
Q 038133 306 VLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQG-FRIRQGCEVVIAT 384 (671)
Q Consensus 306 ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~-~~l~~~~~IiI~T 384 (671)
++|++..+.. ....++++||++||++||.|+++.+.+++...++.+..++|+....... .....+++|+|+|
T Consensus 84 ~l~~l~~l~~-------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 156 (245)
T 3dkp_A 84 SIPILMQLKQ-------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTT 156 (245)
T ss_dssp HHHHHHHHCS-------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEEC
T ss_pred HHHHHHHHhh-------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEEC
Confidence 9999998853 1235789999999999999999999999998899888887765433221 1223468999999
Q ss_pred chHHHHHHhhc--ccccCCccEEEEcccchhhc---cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccC
Q 038133 385 PGRLIDCLERR--YAVLNQCNYVVLDEADRMID---MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATM 459 (671)
Q Consensus 385 p~~L~~~l~~~--~~~l~~~~~vViDEah~~~~---~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~ 459 (671)
|++|.+.+... ...+.++++|||||||++.+ .+|...+..++..+... ..|+++||||+
T Consensus 157 p~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~----------------~~~~~~~SAT~ 220 (245)
T 3dkp_A 157 PNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSH----------------KVRRAMFSATF 220 (245)
T ss_dssp HHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCT----------------TCEEEEEESSC
T ss_pred HHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCC----------------CcEEEEEeccC
Confidence 99999999776 45688999999999999998 57888888888776542 47899999999
Q ss_pred CHHHHHHHHHhcCCCeEEEECCC
Q 038133 460 PPAVERLARKYLRNPVVVTIGTA 482 (671)
Q Consensus 460 ~~~~~~l~~~~l~~p~~i~i~~~ 482 (671)
|+.+..++..++.+|..+.++..
T Consensus 221 ~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 221 AYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp CHHHHHHHHHHSSSCEEEEECC-
T ss_pred CHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999999999999999988764
No 57
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.1e-35 Score=351.66 Aligned_cols=336 Identities=16% Similarity=0.166 Sum_probs=237.6
Q ss_pred CCCcHHHHHHHHHHhC--CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQ--QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~--~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
..|+|||.+++..++. +.++|++++||+|||++++..+..++.. +...++|||||+ .|+.||..++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------g~~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---------GAAERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT---------SSCCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh---------CCCCeEEEEeCH-HHHHHHHHHHHH
Confidence 3799999999998886 4579999999999999998888776643 234589999999 999999988866
Q ss_pred HHhhcCcEEEEEECCCchHHHHH--HHhcCCeEEEEcchHHHHHHhh-cccccCCccEEEEcccchhhccCChH-HHHHH
Q 038133 350 FAHYLGIKVVSIVGGQSIEEQGF--RIRQGCEVVIATPGRLIDCLER-RYAVLNQCNYVVLDEADRMIDMGFEP-QVVGV 425 (671)
Q Consensus 350 ~~~~~~i~v~~~~gg~~~~~~~~--~l~~~~~IiI~Tp~~L~~~l~~-~~~~l~~~~~vViDEah~~~~~~f~~-~i~~i 425 (671)
.+ ++.+..+.|+........ ......+|+|+|++.|...... ..+....+++|||||||++.+.+... .....
T Consensus 222 ~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 222 RF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp HS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred Hh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHH
Confidence 53 667666655432221110 1122579999999988543211 12335689999999999997655331 11122
Q ss_pred HHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHH----HHHH----------------------------HHHhcCC
Q 038133 426 LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPA----VERL----------------------------ARKYLRN 473 (671)
Q Consensus 426 l~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~----~~~l----------------------------~~~~l~~ 473 (671)
+..+... ...++++|||+.+. ...+ ...++..
T Consensus 299 l~~L~~~----------------~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~ 362 (968)
T 3dmq_A 299 IEQLAEH----------------VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAG 362 (968)
T ss_dssp HHHHHTT----------------CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHhhc----------------CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhcc
Confidence 2222110 24589999997430 0000 0000000
Q ss_pred ----------------------------------------------------CeEEEECCCC---ccccceeEEE-----
Q 038133 474 ----------------------------------------------------PVVVTIGTAG---KATELISQHV----- 493 (671)
Q Consensus 474 ----------------------------------------------------p~~i~i~~~~---~~~~~i~~~~----- 493 (671)
...+...... -.........
T Consensus 363 ~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~ 442 (968)
T 3dmq_A 363 NKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPT 442 (968)
T ss_dssp CCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCH
T ss_pred CCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCH
Confidence 0000000000 0000000000
Q ss_pred ----------------------------------------EEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHH
Q 038133 494 ----------------------------------------VMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKN 533 (671)
Q Consensus 494 ----------------------------------------~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~ 533 (671)
..+....|...|..++....+.++||||+++..++.++..
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~ 522 (968)
T 3dmq_A 443 QYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQV 522 (968)
T ss_dssp HHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHH
Confidence 1123456888899999887789999999999999999999
Q ss_pred HHH-cCCeEEEecCCCCHHHHHHHHHHhhcCC--CcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCC
Q 038133 534 LDK-LGYRVTTLHGGKSQEQREISLEGFRTKR--YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGK 610 (671)
Q Consensus 534 L~~-~~~~v~~lhg~~~~~~R~~~l~~F~~g~--~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 610 (671)
|.. .|+.+..+||+|++.+|+.+++.|++|+ ++|||||+++++|||+|++++||+||+|+++..|.|++||+||.|+
T Consensus 523 L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq 602 (968)
T 3dmq_A 523 LREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQ 602 (968)
T ss_dssp HHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSS
T ss_pred HHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCC
Confidence 995 5999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 611 TGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 611 ~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
.|.|+++...........+.+.+.+.
T Consensus 603 ~~~v~v~~~~~~~t~ee~i~~~~~~k 628 (968)
T 3dmq_A 603 AHDIQIHVPYLEKTAQSVLVRWYHEG 628 (968)
T ss_dssp CSCCEEEEEEETTSHHHHHHHHHHHT
T ss_pred CceEEEEEecCCChHHHHHHHHHHhC
Confidence 99877777666666666677766443
No 58
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=6.4e-35 Score=294.55 Aligned_cols=215 Identities=33% Similarity=0.550 Sum_probs=180.2
Q ss_pred cccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCC
Q 038133 241 YKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPIS 320 (671)
Q Consensus 241 ~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~ 320 (671)
+..++.|.++.+|+++++++.+++++...||..|+|+|.++|+.++.++++++++|||||||++|++|++..+..
T Consensus 20 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~----- 94 (237)
T 3bor_A 20 VIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI----- 94 (237)
T ss_dssp -------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT-----
T ss_pred cccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-----
Confidence 345667889999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred cccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcC-CeEEEEcchHHHHHHhhccccc
Q 038133 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG-CEVVIATPGRLIDCLERRYAVL 399 (671)
Q Consensus 321 ~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~-~~IiI~Tp~~L~~~l~~~~~~l 399 (671)
...++++||++||++|+.|+++.+.+++...++.+..++|+.....+...+..+ ++|+|+||++|.+.+.+....+
T Consensus 95 ---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 171 (237)
T 3bor_A 95 ---EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSP 171 (237)
T ss_dssp ---TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCS
T ss_pred ---cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCc
Confidence 125679999999999999999999999988899999999998877766666665 8999999999999998887788
Q ss_pred CCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEE
Q 038133 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTI 479 (671)
Q Consensus 400 ~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i 479 (671)
..+++|||||||++.+++|...+..++..++. ..|+++||||+++.+..++..++.+|..+.+
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT-----------------SIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCT-----------------TCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCC-----------------CCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999988864 5789999999999999999999999988765
Q ss_pred C
Q 038133 480 G 480 (671)
Q Consensus 480 ~ 480 (671)
+
T Consensus 235 ~ 235 (237)
T 3bor_A 235 K 235 (237)
T ss_dssp -
T ss_pred c
Confidence 4
No 59
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=292.78 Aligned_cols=208 Identities=41% Similarity=0.680 Sum_probs=190.5
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCC
Q 038133 248 RPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEG 327 (671)
Q Consensus 248 ~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g 327 (671)
.++.+|+++++++.+++++..+||..|+|+|.++|+.++.++++++++|||||||++|++|++..+... ..+
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~--------~~~ 111 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET--------PQR 111 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--------CCS
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--------CCC
Confidence 356789999999999999999999999999999999999999999999999999999999999987642 246
Q ss_pred CeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhh-cccccCCccEEE
Q 038133 328 PYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER-RYAVLNQCNYVV 406 (671)
Q Consensus 328 ~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~-~~~~l~~~~~vV 406 (671)
+++||++||++|+.|+++.+.+++...++.+..++||.....+...+..+++|+|+||++|.+.+.+ ....+.++++||
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEE
Confidence 7899999999999999999999999999999999999998888777888999999999999998876 445688999999
Q ss_pred EcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEEC
Q 038133 407 LDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIG 480 (671)
Q Consensus 407 iDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~ 480 (671)
|||||++.+++|...+..++..++. ..|+++||||+++.+..++..++.+|..+.++
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~~-----------------~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIPR-----------------DRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSCS-----------------SSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EcChhhhhccChHHHHHHHHHhCCC-----------------CCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999998865 57899999999999999999999999887654
No 60
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.1e-34 Score=329.32 Aligned_cols=295 Identities=19% Similarity=0.196 Sum_probs=217.9
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchh
Q 038133 259 TPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE 338 (671)
Q Consensus 259 ~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~ 338 (671)
+.+.+.+|.++.+ |.|.......+++++++++||||||||+.+ +..+.. .+..+|++||++
T Consensus 130 ~~d~l~~i~dl~~----p~~~~p~ar~l~rk~vlv~apTGSGKT~~a----l~~l~~-----------~~~gl~l~PtR~ 190 (677)
T 3rc3_A 130 CKDDLRKISDLRI----PPNWYPDARAMQRKIIFHSGPTNSGKTYHA----IQKYFS-----------AKSGVYCGPLKL 190 (677)
T ss_dssp CHHHHHHHTBCCC----GGGGCHHHHTSCCEEEEEECCTTSSHHHHH----HHHHHH-----------SSSEEEEESSHH
T ss_pred CHHHHHHHhhccC----hhhhCHHHHhcCCCEEEEEcCCCCCHHHHH----HHHHHh-----------cCCeEEEeCHHH
Confidence 5667777765544 333334456678999999999999999833 333332 234599999999
Q ss_pred hHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCC
Q 038133 339 LAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGF 418 (671)
Q Consensus 339 La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f 418 (671)
||.|+++.+... |+.+..++|+...... .-....+++++|++.+. ....+++|||||||+|.+.+|
T Consensus 191 LA~Qi~~~l~~~----g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~ 256 (677)
T 3rc3_A 191 LAHEIFEKSNAA----GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPAR 256 (677)
T ss_dssp HHHHHHHHHHHT----TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTT
T ss_pred HHHHHHHHHHhc----CCcEEEEECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccc
Confidence 999999987764 7889999998764100 00012678888876542 256789999999999999999
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEecc
Q 038133 419 EPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKE 498 (671)
Q Consensus 419 ~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~ 498 (671)
...+..++..++.. ..+++++|||. +.+..+.... ..+..+........ . . ....
T Consensus 257 g~~~~~~l~~l~~~----------------~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~~r~~~---l--~--~~~~ 311 (677)
T 3rc3_A 257 GWAWTRALLGLCAE----------------EVHLCGEPAAI-DLVMELMYTT-GEEVEVRDYKRLTP---I--S--VLDH 311 (677)
T ss_dssp HHHHHHHHHHCCEE----------------EEEEEECGGGH-HHHHHHHHHH-TCCEEEEECCCSSC---E--E--ECSS
T ss_pred hHHHHHHHHccCcc----------------ceEEEeccchH-HHHHHHHHhc-CCceEEEEeeecch---H--H--HHHH
Confidence 99999998888731 57899999995 4455555443 33333322111000 0 0 0000
Q ss_pred chhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhc--CCCcEEEecccccc
Q 038133 499 SEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT--KRYNVLVATDVAGR 576 (671)
Q Consensus 499 ~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~--g~~~VLVaT~~~~~ 576 (671)
. + ..+... .+..||||++++.|+.+++.|...++.+..+||+|++.+|..+++.|++ |.++|||||+++++
T Consensus 312 ~--l----~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~ 384 (677)
T 3rc3_A 312 A--L----ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGM 384 (677)
T ss_dssp C--C----CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGS
T ss_pred H--H----HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHC
Confidence 0 0 111222 3456889999999999999999999999999999999999999999999 88999999999999
Q ss_pred cCCCCCCcEEEEcCC--------------CCCHHHHHHHhcccCCCCCc---cEEEEEec
Q 038133 577 GIDIPDVAHVINYDM--------------PGNIEMYTHRIGRTGRAGKT---GVATTFLT 619 (671)
Q Consensus 577 GiDIp~v~~VI~~d~--------------p~s~~~y~QriGR~gR~G~~---g~ai~~~~ 619 (671)
|||+ ++++||+++. |.+..+|.||+|||||.|.. |.|+.+..
T Consensus 385 GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 385 GLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp SCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred CcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 9999 9999999999 77999999999999999964 66666543
No 61
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=301.50 Aligned_cols=215 Identities=30% Similarity=0.513 Sum_probs=187.7
Q ss_pred CcccccCCCCCC---CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCChHHHHHHHHHHHH
Q 038133 238 NISYKGSKIPRP---MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 238 ~i~~~g~~ip~p---i~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~--rd~ii~a~TGsGKT~~~ll~~l~~ 312 (671)
.+.+.+...+.| +.+|.+++|++.++++|..+||..|+|+|.++||.++.+ +|+|++||||||||++|++|++..
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 444555555555 578999999999999999999999999999999999987 999999999999999999999998
Q ss_pred HhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhc-CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHH
Q 038133 313 ISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDC 391 (671)
Q Consensus 313 l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~ 391 (671)
+.. ...++++|||+||++||.|++..+..+...+ ++.+..++|+....... ..+++|+||||++|+++
T Consensus 156 l~~--------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~ 224 (300)
T 3fmo_B 156 VEP--------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDW 224 (300)
T ss_dssp CCT--------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHH
T ss_pred hhc--------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHH
Confidence 753 2357899999999999999999999998765 68888888887654332 45789999999999999
Q ss_pred Hhh-cccccCCccEEEEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHH
Q 038133 392 LER-RYAVLNQCNYVVLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARK 469 (671)
Q Consensus 392 l~~-~~~~l~~~~~vViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~ 469 (671)
+.+ ....+.++++|||||||+|++ .+|...+..|+..++. .+|+++||||+++.+..++..
T Consensus 225 l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~-----------------~~q~i~~SAT~~~~v~~~a~~ 287 (300)
T 3fmo_B 225 CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR-----------------NCQMLLFSATFEDSVWKFAQK 287 (300)
T ss_dssp HTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT-----------------TCEEEEEESCCCHHHHHHHHH
T ss_pred HHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCC-----------------CCEEEEEeccCCHHHHHHHHH
Confidence 966 456789999999999999998 7899999999888865 589999999999999999999
Q ss_pred hcCCCeEEEEC
Q 038133 470 YLRNPVVVTIG 480 (671)
Q Consensus 470 ~l~~p~~i~i~ 480 (671)
++.+|..|.+.
T Consensus 288 ~l~~p~~i~~~ 298 (300)
T 3fmo_B 288 VVPDPNVIKLK 298 (300)
T ss_dssp HSSSCEEEEEC
T ss_pred HCCCCeEEEec
Confidence 99999988765
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=285.31 Aligned_cols=228 Identities=32% Similarity=0.498 Sum_probs=194.7
Q ss_pred HHHHHHHHhhcCcccccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHH
Q 038133 227 ERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 227 ~~~~~~f~~~~~i~~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~l 306 (671)
+.+...++..+.. ..+.++.+|.++++++.+++++...||..|+|+|.++++.+++++++++++|||||||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 3444455555432 22567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcch
Q 038133 307 LPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPG 386 (671)
Q Consensus 307 l~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~ 386 (671)
+|++..+...+. ....++++||++||++|+.|+++.+.++....++.+..++|+.........+ .+++|+|+||+
T Consensus 81 ~~~l~~l~~~~~----~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~ 155 (236)
T 2pl3_A 81 VPVLEALYRLQW----TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPG 155 (236)
T ss_dssp HHHHHHHHHTTC----CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHH
T ss_pred HHHHHHHHhhcc----cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHH
Confidence 999998864321 1235789999999999999999999999988889999999998876665444 57999999999
Q ss_pred HHHHHHhhc-ccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHH
Q 038133 387 RLIDCLERR-YAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVER 465 (671)
Q Consensus 387 ~L~~~l~~~-~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~ 465 (671)
+|.+.+... ...+.++++|||||||++.+++|...+..++..++. ..|+++||||+++.+..
T Consensus 156 ~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~-----------------~~~~l~~SAT~~~~~~~ 218 (236)
T 2pl3_A 156 RLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK-----------------KRQTLLFSATQTKSVKD 218 (236)
T ss_dssp HHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT-----------------TSEEEEEESSCCHHHHH
T ss_pred HHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC-----------------CCeEEEEEeeCCHHHHH
Confidence 999988765 356789999999999999999999999999998875 57899999999999999
Q ss_pred HHHHhcCCCeEEEECC
Q 038133 466 LARKYLRNPVVVTIGT 481 (671)
Q Consensus 466 l~~~~l~~p~~i~i~~ 481 (671)
+++.++.+|..+.++.
T Consensus 219 ~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 219 LARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHSCSSCEEEECCC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 9999999999887653
No 63
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.2e-34 Score=287.18 Aligned_cols=211 Identities=28% Similarity=0.517 Sum_probs=184.1
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcc
Q 038133 243 GSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEE 322 (671)
Q Consensus 243 g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~ 322 (671)
+...|.+..+|+++++++.+.+++...||..|+|+|.++++.+++|+++++++|||||||++|++|++..+..
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------- 88 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------- 88 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-------
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-------
Confidence 5667888899999999999999999999999999999999999999999999999999999999999988743
Q ss_pred cccCCCeEEEEecchhhHHHHHHHHHHHHhhc-CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCC
Q 038133 323 NEAEGPYAVVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 323 ~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
...++++||++||++|+.|+++.+.++.... ++++..++|+.....+...+ .+++|+|+||++|.+.+......+.+
T Consensus 89 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 89 -ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred -cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCccccc
Confidence 1357899999999999999999999998765 78999999998877665444 57999999999999999887777899
Q ss_pred ccEEEEcccchhhccC-ChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEE
Q 038133 402 CNYVVLDEADRMIDMG-FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTI 479 (671)
Q Consensus 402 ~~~vViDEah~~~~~~-f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i 479 (671)
+++|||||||++.+++ |...+..++..++. ..|+++||||+++.+..++..|+.+|..+.+
T Consensus 167 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~-----------------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGSFQEQINWIYSSLPA-----------------SKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp CCEEEESSHHHHHSTTSSHHHHHHHHHHSCS-----------------SCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCEEEeCCchHhhcCcchHHHHHHHHHhCCC-----------------CCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999998 99999999998875 4789999999999999999999999987754
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=6.5e-34 Score=284.23 Aligned_cols=214 Identities=33% Similarity=0.558 Sum_probs=184.1
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcc
Q 038133 243 GSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEE 322 (671)
Q Consensus 243 g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~ 322 (671)
....|.++.+|+++++++.+++++...||..|+|+|.++++.+++++++++++|||||||++|++|++..+..
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------- 78 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------- 78 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-------
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc-------
Confidence 3457888999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred cccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCc
Q 038133 323 NEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQC 402 (671)
Q Consensus 323 ~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~ 402 (671)
...++++||++||++|+.|+++.+.+++...++.+..++|+.........+. .++|+|+||++|.+.+.+....+.++
T Consensus 79 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 79 -SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp -TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred -cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 1357899999999999999999999999888999999999988766654443 49999999999999998887788999
Q ss_pred cEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCC
Q 038133 403 NYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTA 482 (671)
Q Consensus 403 ~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~ 482 (671)
++|||||||++.+++|...+..++..++. ..|+++||||+++.+..++..|+.+|..+.+...
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~~~-----------------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLLPP-----------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCT-----------------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhCCc-----------------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999988865 5789999999999999999999999988866543
No 65
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-33 Score=278.60 Aligned_cols=202 Identities=31% Similarity=0.606 Sum_probs=185.6
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeE
Q 038133 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330 (671)
Q Consensus 251 ~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~v 330 (671)
.+|+++++++.+++++...||..|+|+|.++++.++.++++++++|||||||++|++|++..+.. ...++++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~--------~~~~~~~ 74 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL--------KKDNIQA 74 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT--------TSCSCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc--------cCCCeeE
Confidence 46999999999999999999999999999999999999999999999999999999999987643 1356889
Q ss_pred EEEecchhhHHHHHHHHHHHHhhc-CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 331 VVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 331 Lil~Ptr~La~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
||++||++|+.|+++.+.++.... ++.+..++|+.........+..+++|+|+||++|.+.+.+....+.++++||+||
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 154 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEC
Confidence 999999999999999999998877 7899999999998887777778899999999999999988877889999999999
Q ss_pred cchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEE
Q 038133 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVV 477 (671)
Q Consensus 410 ah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i 477 (671)
||++.+.+|...+..++..++. ..|+++||||+|+.+..++..++.+|..+
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~-----------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPK-----------------NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCT-----------------TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHHhHhhCcHHHHHHHHHhCCc-----------------cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999998875 47899999999999999999999999765
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.5e-34 Score=285.47 Aligned_cols=209 Identities=32% Similarity=0.516 Sum_probs=186.4
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCC
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP 328 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~ 328 (671)
|..+|+++++++.+++++.+.||..|+|+|.++++.+++++++++++|||||||++|++|++..+.. ...++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~--------~~~~~ 73 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP--------ERAEV 73 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT--------TSCSC
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh--------CcCCc
Confidence 4568999999999999999999999999999999999999999999999999999999999988753 12578
Q ss_pred eEEEEecchhhHHHHHHHHHHHHhhc----CcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccE
Q 038133 329 YAVVMAPTRELAQQIEEETVKFAHYL----GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404 (671)
Q Consensus 329 ~vLil~Ptr~La~Qi~~~~~k~~~~~----~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~ 404 (671)
++||++||++|+.|+++.+.++.... ++.+..++|+.........+..+++|+|+||++|.+.+......+.++++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 153 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHI 153 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceE
Confidence 99999999999999999999998876 78899999998876665555568999999999999999887777899999
Q ss_pred EEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCC
Q 038133 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTA 482 (671)
Q Consensus 405 vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~ 482 (671)
|||||||++.+++|...+..++..++. ..|+++||||+++.+..++..++.+|..+.+...
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~-----------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPK-----------------DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCT-----------------TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCc-----------------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 999999999999999999999998865 4789999999999999999999999988876544
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.5e-33 Score=313.89 Aligned_cols=320 Identities=17% Similarity=0.234 Sum_probs=223.7
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGL----QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 273 ~p~~~Q~~ai~~il----~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.|+|||.++++.+. .++++|++++||+|||++++..+...... .....+|||||+ .|+.||.+++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~---------~~~~~~LIv~P~-~l~~qw~~e~~ 106 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE---------NELTPSLVICPL-SVLKNWEEELS 106 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT---------TCCSSEEEEECS-TTHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc---------CCCCCEEEEccH-HHHHHHHHHHH
Confidence 69999999998774 57899999999999999976655544322 245679999995 68899999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHh
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 428 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~ 428 (671)
+++. ++++..+.|+... .....++|+|+||+.|..... +....+++||+||||++.+.+. .....+..
T Consensus 107 ~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~ 174 (500)
T 1z63_A 107 KFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKE 174 (500)
T ss_dssp HHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHT
T ss_pred HHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHh
Confidence 9875 3566666665532 122457999999999865433 3345789999999999976542 33444554
Q ss_pred CCCCCCCCCCchhhhhhhhhcceEEEEeccCCHH-HHHH------------------------------------HHHhc
Q 038133 429 MPSSNLKPENEDEELDEKRIYRTTYMFSATMPPA-VERL------------------------------------ARKYL 471 (671)
Q Consensus 429 l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~-~~~l------------------------------------~~~~l 471 (671)
++ ....+++|||+... ...+ ...++
T Consensus 175 l~------------------~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l 236 (500)
T 1z63_A 175 LK------------------SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII 236 (500)
T ss_dssp SC------------------EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH
T ss_pred hc------------------cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH
Confidence 43 35679999998432 1111 11111
Q ss_pred CCCeEEEECCCC-----ccccceeEEEEEe--------------------------------------------------
Q 038133 472 RNPVVVTIGTAG-----KATELISQHVVMM-------------------------------------------------- 496 (671)
Q Consensus 472 ~~p~~i~i~~~~-----~~~~~i~~~~~~~-------------------------------------------------- 496 (671)
.|..+.-.... ..+.... ....+
T Consensus 237 -~~~~lrr~k~~~~~~~~lp~~~~-~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~ 314 (500)
T 1z63_A 237 -SPFILRRTKYDKAIINDLPDKIE-TNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALL 314 (500)
T ss_dssp -TTTEECCCTTCHHHHTTSCSEEE-EEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHH
T ss_pred -hhHeeeecccccchhhcCCCCeE-EEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHh
Confidence 12221110000 0011111 11111
Q ss_pred -------ccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHc-CCeEEEecCCCCHHHHHHHHHHhhcC-CC
Q 038133 497 -------KESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKL-GYRVTTLHGGKSQEQREISLEGFRTK-RY 565 (671)
Q Consensus 497 -------~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~l~~F~~g-~~ 565 (671)
..+.|...+.+++... .+.++||||++...++.++..|... ++.+..+||++++.+|..+++.|++| ..
T Consensus 315 ~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~ 394 (500)
T 1z63_A 315 KGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSV 394 (500)
T ss_dssp HCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTC
T ss_pred cCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 1234566666777654 4789999999999999999999885 99999999999999999999999998 45
Q ss_pred c-EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEE--EEEecCCCchHHHHHHHHHHhc
Q 038133 566 N-VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVA--TTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 566 ~-VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~a--i~~~~~~d~~~~~~l~~~l~~~ 636 (671)
. +||+|+++++|+|+|++++||+||+|+++..|.|++||++|.|+.+.+ |.|++.. .+...+.+.+...
T Consensus 395 ~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~--tiee~i~~~~~~K 466 (500)
T 1z63_A 395 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG--TLEEKIDQLLAFK 466 (500)
T ss_dssp CCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT--SHHHHTHHHHTTC
T ss_pred CEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC--CHHHHHHHHHHHH
Confidence 5 789999999999999999999999999999999999999999987655 4455543 3444555554443
No 68
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=7e-33 Score=273.00 Aligned_cols=205 Identities=41% Similarity=0.683 Sum_probs=184.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEE
Q 038133 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAV 331 (671)
Q Consensus 252 ~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vL 331 (671)
+|+++++++.+++++...||..|+|+|.++++.+++++++++++|||||||++|++|++..+...+ ....++++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-----~~~~~~~~l 76 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-----ERGRKPRAL 76 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-----CTTCCCSEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-----ccCCCCcEE
Confidence 589999999999999999999999999999999999999999999999999999999999875321 123578999
Q ss_pred EEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccc
Q 038133 332 VMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 411 (671)
Q Consensus 332 il~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah 411 (671)
|++||++|+.|+++.+.+++.. +++..++|+.........+..+++|+|+||++|.+.+......+.++++||+||||
T Consensus 77 il~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred EEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 9999999999999999998764 67888999988877777777899999999999999998877788999999999999
Q ss_pred hhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEEEC
Q 038133 412 RMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIG 480 (671)
Q Consensus 412 ~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~ 480 (671)
++.+.+|...+..++..++. ..|+++||||+++.+..++..|+.+|..+.+.
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPP-----------------SRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCT-----------------TSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred HhhccchHHHHHHHHHhCCc-----------------cCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 99999999999999988765 57899999999999999999999999887653
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.7e-33 Score=276.67 Aligned_cols=212 Identities=32% Similarity=0.534 Sum_probs=182.0
Q ss_pred ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCc
Q 038133 242 KGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISE 321 (671)
Q Consensus 242 ~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~ 321 (671)
+|.-.+....+|+++++++.+++++...||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..
T Consensus 5 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------ 78 (220)
T 1t6n_A 5 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------ 78 (220)
T ss_dssp ---------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------
T ss_pred CCCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------
Confidence 34445556678999999999999999999999999999999999999999999999999999999999988643
Q ss_pred ccccCCCeEEEEecchhhHHHHHHHHHHHHhhc-CcEEEEEECCCchHHHHHHHhc-CCeEEEEcchHHHHHHhhccccc
Q 038133 322 ENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQ-GCEVVIATPGRLIDCLERRYAVL 399 (671)
Q Consensus 322 ~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~-~i~v~~~~gg~~~~~~~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l 399 (671)
...++++||++||++|+.|+++.+.++.... ++++..++|+.+...+...+.. .++|+|+||++|.+.+......+
T Consensus 79 --~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~ 156 (220)
T 1t6n_A 79 --VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNL 156 (220)
T ss_dssp --CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCC
T ss_pred --cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCc
Confidence 1245689999999999999999999998776 7899999999887777666655 47999999999999998877788
Q ss_pred CCccEEEEcccchhhc-cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCeEEE
Q 038133 400 NQCNYVVLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVT 478 (671)
Q Consensus 400 ~~~~~vViDEah~~~~-~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~ 478 (671)
.++++||+||||++.+ .+|...+..++..++. ..|+++||||+++.+..++..|+.+|..+.
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~-----------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH-----------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS-----------------SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC-----------------cCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9999999999999987 5788888888887764 578999999999999999999999998764
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.1e-33 Score=283.86 Aligned_cols=203 Identities=32% Similarity=0.507 Sum_probs=180.5
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCe
Q 038133 252 NWAEGK--LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPY 329 (671)
Q Consensus 252 ~f~e~~--l~~~i~~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~ 329 (671)
+|.+++ +++.+++++...||..|+|+|.++++.++.+++++++||||||||++|++|++..+...+.. ...+++
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~~~~ 128 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM----PRNGTG 128 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC----GGGCCC
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc----ccCCce
Confidence 344444 99999999999999999999999999999999999999999999999999999988753321 135788
Q ss_pred EEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcc-cccCCccEEEEc
Q 038133 330 AVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY-AVLNQCNYVVLD 408 (671)
Q Consensus 330 vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~-~~l~~~~~vViD 408 (671)
+||++||++||.|+++.+.+++...++.+..++|+.........+..+++|+|+||++|.+.+.... ..+.++++||||
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 9999999999999999999999999999999999999888888888899999999999998887653 568899999999
Q ss_pred ccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCe
Q 038133 409 EADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPV 475 (671)
Q Consensus 409 Eah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~ 475 (671)
|||+|.+++|...+..++..++. ..|+++||||+++.+..+++.++.++.
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~-----------------~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPT-----------------RRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCS-----------------SSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCC-----------------CCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999875 579999999999999999999988654
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=1.8e-30 Score=298.61 Aligned_cols=321 Identities=19% Similarity=0.195 Sum_probs=221.8
Q ss_pred CCcHHHHHHHHHHh---------CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 273 NPSPIQMAAIPLGL---------QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 273 ~p~~~Q~~ai~~il---------~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
.++|||.+++..++ .++.+|++.+||+|||++++..+...+...+.. ......+|||||+ .|+.||
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~----~p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC----KPEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS----SCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc----cCCCCcEEEEecH-HHHHHH
Confidence 69999999999874 356799999999999999888777666543210 1124569999997 788999
Q ss_pred HHHHHHHHhhcCcEEEEEECCCchHHH--HHHHh------cCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhc
Q 038133 344 EEETVKFAHYLGIKVVSIVGGQSIEEQ--GFRIR------QGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 344 ~~~~~k~~~~~~i~v~~~~gg~~~~~~--~~~l~------~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~ 415 (671)
.+++.+++.. .+.++.+.||...... ..... ..++|+|+||+.+..... .+....+++||+||||++.+
T Consensus 130 ~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 130 YNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCC
Confidence 9999998765 5667777776543221 11111 147899999999875432 23345789999999999865
Q ss_pred cCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHH-------------------HHH----------
Q 038133 416 MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAV-------------------ERL---------- 466 (671)
Q Consensus 416 ~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~-------------------~~l---------- 466 (671)
.. ......+..+.. ...+++|||+...- ..+
T Consensus 207 ~~--~~~~~al~~l~~------------------~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~ 266 (644)
T 1z3i_X 207 SD--NQTYLALNSMNA------------------QRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILK 266 (644)
T ss_dssp TC--HHHHHHHHHHCC------------------SEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHH
T ss_pred hh--hHHHHHHHhccc------------------CcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhh
Confidence 43 223333333332 34688888863310 000
Q ss_pred ------------------------HHHh------------cCCCeE--EEECCCCcc------------------cc---
Q 038133 467 ------------------------ARKY------------LRNPVV--VTIGTAGKA------------------TE--- 487 (671)
Q Consensus 467 ------------------------~~~~------------l~~p~~--i~i~~~~~~------------------~~--- 487 (671)
...+ +..... +.+...... ..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~ 346 (644)
T 1z3i_X 267 GRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKIS 346 (644)
T ss_dssp HHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCC
T ss_pred cCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 0001 000000 000000000 00
Q ss_pred ------------------------------------ceeE----EEEEeccchhHHHHHHHHHHh---CCCcEEEEecCh
Q 038133 488 ------------------------------------LISQ----HVVMMKESEKFSRLQRLLDEL---GDKTAIVFVNTK 524 (671)
Q Consensus 488 ------------------------------------~i~~----~~~~~~~~~k~~~L~~ll~~~---~~~~iIVF~~~~ 524 (671)
.... .......+.|...|..++... .+.++||||++.
T Consensus 347 ~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~ 426 (644)
T 1z3i_X 347 VSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYT 426 (644)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCH
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccH
Confidence 0000 000001234555565555543 578999999999
Q ss_pred hhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCc---EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHH
Q 038133 525 KNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN---VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHR 601 (671)
Q Consensus 525 ~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~---VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~Qr 601 (671)
..++.+...|...|+.+..+||+++..+|..+++.|++|... +||+|++++.|||++++++||+||+||++..|.|+
T Consensus 427 ~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa 506 (644)
T 1z3i_X 427 QTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQA 506 (644)
T ss_dssp HHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHH
Confidence 999999999999999999999999999999999999998764 89999999999999999999999999999999999
Q ss_pred hcccCCCCCcc--EEEEEecCC
Q 038133 602 IGRTGRAGKTG--VATTFLTFH 621 (671)
Q Consensus 602 iGR~gR~G~~g--~ai~~~~~~ 621 (671)
+||++|.|+.. .+|.|++..
T Consensus 507 ~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 507 MARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp HTTSSSTTCCSCEEEEEEEETT
T ss_pred HHhhhhcCCCCceEEEEEEECC
Confidence 99999999765 455566655
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.98 E-value=2.5e-31 Score=315.91 Aligned_cols=323 Identities=15% Similarity=0.135 Sum_probs=221.0
Q ss_pred CHHHHHHHHHcC-------CCCCcHHHHHHHHHHhC--------------CCcEEEEcCCCChHHHHHHHHHHHHHhcCC
Q 038133 259 TPELLRAVERVG-------YKNPSPIQMAAIPLGLQ--------------QRDVIGIAETGSGKTAAFVLPMLTYISRLP 317 (671)
Q Consensus 259 ~~~i~~~i~~~g-------~~~p~~~Q~~ai~~il~--------------~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~ 317 (671)
++.+++.|..+. ...|+|+|..|++.++. +++++++++||||||+++ ++++..+...
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~- 327 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL- 327 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-
Confidence 345566665542 23599999999999875 368999999999999997 5555555321
Q ss_pred CCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHh-cCCeEEEEcchHHHHHHhhcc
Q 038133 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIR-QGCEVVIATPGRLIDCLERRY 396 (671)
Q Consensus 318 ~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~~IiI~Tp~~L~~~l~~~~ 396 (671)
...+++|||||+++|+.|+...+..+... .+.++.+.......+. .+++|+|+||++|...+....
T Consensus 328 -------~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~ 394 (1038)
T 2w00_A 328 -------DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES 394 (1038)
T ss_dssp -------TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC
T ss_pred -------CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc
Confidence 23469999999999999999999887642 2345555555555554 468999999999998876532
Q ss_pred --cccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHH----HHHHHh
Q 038133 397 --AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE----RLARKY 470 (671)
Q Consensus 397 --~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~----~l~~~~ 470 (671)
..+..+.+||+||||++... ..+..|+..++. .++++||||+..... .....+
T Consensus 395 ~~~~~~~~~lvIiDEAHrs~~~---~~~~~I~~~~p~------------------a~~lgfTATP~~~~~~~~~~~t~~~ 453 (1038)
T 2w00_A 395 DLPVYNQQVVFIFDECHRSQFG---EAQKNLKKKFKR------------------YYQFGFTGTPIFPENALGSETTASV 453 (1038)
T ss_dssp CCGGGGSCEEEEEESCCTTHHH---HHHHHHHHHCSS------------------EEEEEEESSCCCSTTCTTSCCHHHH
T ss_pred chhccccccEEEEEccchhcch---HHHHHHHHhCCc------------------ccEEEEeCCccccccchhhhHHHHH
Confidence 24667899999999998642 234566666653 689999999875321 111222
Q ss_pred cCCC-----------------eEEEECCCCcccc------------ceeEEEEEeccchhHHHHH-HHHHHh--------
Q 038133 471 LRNP-----------------VVVTIGTAGKATE------------LISQHVVMMKESEKFSRLQ-RLLDEL-------- 512 (671)
Q Consensus 471 l~~p-----------------~~i~i~~~~~~~~------------~i~~~~~~~~~~~k~~~L~-~ll~~~-------- 512 (671)
++++ ..+.......... .+.+. ..+....+...+. .++...
T Consensus 454 FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~ 532 (1038)
T 2w00_A 454 FGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTF 532 (1038)
T ss_dssp HCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhc
Confidence 2222 2111110000000 00000 0000111222322 233322
Q ss_pred ---CCCcEEEEecChhhHHHHHHHHHHcC------------CeE-EEecCC----------C----------CHH-----
Q 038133 513 ---GDKTAIVFVNTKKNADMVAKNLDKLG------------YRV-TTLHGG----------K----------SQE----- 551 (671)
Q Consensus 513 ---~~~~iIVF~~~~~~~~~l~~~L~~~~------------~~v-~~lhg~----------~----------~~~----- 551 (671)
.+.++||||+++..|..+++.|...+ +.+ +++||+ + ++.
T Consensus 533 ~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l 612 (1038)
T 2w00_A 533 PGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFL 612 (1038)
T ss_dssp SSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHH
T ss_pred ccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHH
Confidence 23579999999999999999998764 455 455542 2 221
Q ss_pred ------------------------HHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCC
Q 038133 552 ------------------------QREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGR 607 (671)
Q Consensus 552 ------------------------~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR 607 (671)
.|..+++.|++|.++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|
T Consensus 613 ~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR 691 (1038)
T 2w00_A 613 DAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNR 691 (1038)
T ss_dssp HHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCc
Confidence 47889999999999999999999999999999 67889999999999999999999
Q ss_pred CCCc----cEEEEEec
Q 038133 608 AGKT----GVATTFLT 619 (671)
Q Consensus 608 ~G~~----g~ai~~~~ 619 (671)
.+.. |.++.|+.
T Consensus 692 ~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 692 IYDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCCTTCCSEEEEESSC
T ss_pred CCCCCCCcEEEEEccc
Confidence 8753 78887775
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=8.7e-30 Score=288.28 Aligned_cols=333 Identities=21% Similarity=0.231 Sum_probs=254.7
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
+|+ .|+|+|..++|.+++|+ |+.+.||+|||++|++|++.... .|..++||+||++||.|+++++.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-----------~G~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-----------TGKGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-----------TCSCCEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-----------hCCCEEEEeCCHHHHHHHHHHHH
Confidence 699 99999999999999998 99999999999999999965443 46789999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHH-HHHHhhcc------cccC---CccEEEEcccchhh-ccC
Q 038133 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL-IDCLERRY------AVLN---QCNYVVLDEADRMI-DMG 417 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L-~~~l~~~~------~~l~---~~~~vViDEah~~~-~~~ 417 (671)
.++..+|+++.+++||.+.... ....+|+|+||||++| ++++..+. ..+. .+.++||||+|.|+ +.+
T Consensus 142 ~l~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDea 219 (997)
T 2ipc_A 142 PVYRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEA 219 (997)
T ss_dssp HHHHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSST
T ss_pred HHHHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCC
Confidence 9999999999999999885444 3345799999999999 88887763 4577 89999999999987 332
Q ss_pred C---------------hHHHHHHHHhCCCCCC-------------CCC--------Cc-------------hhh------
Q 038133 418 F---------------EPQVVGVLDAMPSSNL-------------KPE--------NE-------------DEE------ 442 (671)
Q Consensus 418 f---------------~~~i~~il~~l~~~~~-------------~~~--------~~-------------~~~------ 442 (671)
. ...+..+...++.... ..+ ++ ...
T Consensus 220 rtPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~ 299 (997)
T 2ipc_A 220 RTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENME 299 (997)
T ss_dssp TSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHH
T ss_pred CCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHH
Confidence 2 2345567777654210 000 00 000
Q ss_pred h------------------------------------------------------------------------hhhhhcc
Q 038133 443 L------------------------------------------------------------------------DEKRIYR 450 (671)
Q Consensus 443 ~------------------------------------------------------------------------~~~~~~~ 450 (671)
+ .-.+.|.
T Consensus 300 l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~ 379 (997)
T 2ipc_A 300 LAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYE 379 (997)
T ss_dssp HHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhCh
Confidence 0 0023366
Q ss_pred eEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhhHH
Q 038133 451 TTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNAD 528 (671)
Q Consensus 451 q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~ 528 (671)
.+.+||.|.......+...|--+ ++.+++..+....-....++.+...|+..+.+-+... .+.||||+|.|++..+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~--Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE 457 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMD--VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSE 457 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCC--EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHH
T ss_pred HheecCCCchHHHHHHHHHhCCC--EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHH
Confidence 78899999988888887777655 4556655444444444555667788888877766543 4899999999999999
Q ss_pred HHHHHHH-------------------------------------------------------------------------
Q 038133 529 MVAKNLD------------------------------------------------------------------------- 535 (671)
Q Consensus 529 ~l~~~L~------------------------------------------------------------------------- 535 (671)
.|+..|.
T Consensus 458 ~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 537 (997)
T 2ipc_A 458 RLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTL 537 (997)
T ss_dssp HHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhh
Confidence 9999998
Q ss_pred ---HcCCeEEEecCCCCHHHHHHHHHHhhcCC-CcEEEecccccccCCCCCC-------------------c--------
Q 038133 536 ---KLGYRVTTLHGGKSQEQREISLEGFRTKR-YNVLVATDVAGRGIDIPDV-------------------A-------- 584 (671)
Q Consensus 536 ---~~~~~v~~lhg~~~~~~R~~~l~~F~~g~-~~VLVaT~~~~~GiDIp~v-------------------~-------- 584 (671)
+.|++..++++.....+- .++. ..|. -.|-|||+++|||.||.-- .
T Consensus 538 ~~~~~gI~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~ 614 (997)
T 2ipc_A 538 AVLRQGIPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIK 614 (997)
T ss_dssp HHHHHCCCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHH
T ss_pred HHHHcCCCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccc
Confidence 457777777765443222 2222 2343 3599999999999999432 1
Q ss_pred -----------------------------------------------EEEEcCCCCCHHHHHHHhcccCCCCCccEEEEE
Q 038133 585 -----------------------------------------------HVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 617 (671)
Q Consensus 585 -----------------------------------------------~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~ 617 (671)
+||-...+.|..--.|..||+||-|.+|.+.+|
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~ 694 (997)
T 2ipc_A 615 KMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFY 694 (997)
T ss_dssp HHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEE
T ss_pred cccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEE
Confidence 788888999999999999999999999999999
Q ss_pred ecCCC
Q 038133 618 LTFHD 622 (671)
Q Consensus 618 ~~~~d 622 (671)
++.+|
T Consensus 695 LSLeD 699 (997)
T 2ipc_A 695 VSFDD 699 (997)
T ss_dssp EESSS
T ss_pred EECCh
Confidence 99887
No 74
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-31 Score=309.86 Aligned_cols=367 Identities=16% Similarity=0.219 Sum_probs=242.9
Q ss_pred CCChh-hhhccCHHHHHHHHhhcCcc---cccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh----C
Q 038133 216 HWSEK-KLEEMTERDWRIFREDFNIS---YKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGL----Q 287 (671)
Q Consensus 216 ~~~~~-~~~~~~~~~~~~f~~~~~i~---~~g~~ip~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il----~ 287 (671)
.|... .+..+.++....|..+.+.. ......+.....|..+...+... .-..++|||.+++..++ .
T Consensus 181 tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~~~~~ 254 (800)
T 3mwy_W 181 TWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAFLWSK 254 (800)
T ss_dssp BCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHHHHTT
T ss_pred cccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHHHhhc
Confidence 35433 23345566667776654321 11112222223344433332211 12379999999998776 7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSI 367 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 367 (671)
++++|++.+||+|||++++..+...+.. ......+||||| ..|+.||..++.+++. ++.++.++|+...
T Consensus 255 ~~~~ILademGlGKT~~ai~~i~~l~~~--------~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~ 323 (800)
T 3mwy_W 255 GDNGILADEMGLGKTVQTVAFISWLIFA--------RRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKS 323 (800)
T ss_dssp TCCEEECCCTTSSTTHHHHHHHHHHHHH--------HSCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHH
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHHHHh--------cCCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHH
Confidence 8899999999999999877766554432 124566899999 6788899999998864 4677777776654
Q ss_pred HHHHHHH------------hcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCCCCC
Q 038133 368 EEQGFRI------------RQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLK 435 (671)
Q Consensus 368 ~~~~~~l------------~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~~~~ 435 (671)
....... ...++|+|+||+.+...... +....+++|||||||++.+.. ..+...+..+.
T Consensus 324 r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l~----- 394 (800)
T 3mwy_W 324 RDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSFK----- 394 (800)
T ss_dssp HHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTSE-----
T ss_pred HHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHHHHhh-----
Confidence 4433221 12578999999999764332 223468899999999985533 23334444442
Q ss_pred CCCchhhhhhhhhcceEEEEeccCCH----HHHHHHHHhcC-----------------------------CCeEEEECCC
Q 038133 436 PENEDEELDEKRIYRTTYMFSATMPP----AVERLARKYLR-----------------------------NPVVVTIGTA 482 (671)
Q Consensus 436 ~~~~~~~~~~~~~~~q~i~~SAT~~~----~~~~l~~~~l~-----------------------------~p~~i~i~~~ 482 (671)
....+++|||+.. .+-.+...... .|.++.-...
T Consensus 395 -------------~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~ 461 (800)
T 3mwy_W 395 -------------VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKK 461 (800)
T ss_dssp -------------EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGG
T ss_pred -------------hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHH
Confidence 2456778888621 11111110000 0111000000
Q ss_pred C---ccccceeEEEE-----------------------------------------------------------------
Q 038133 483 G---KATELISQHVV----------------------------------------------------------------- 494 (671)
Q Consensus 483 ~---~~~~~i~~~~~----------------------------------------------------------------- 494 (671)
. ..+......+.
T Consensus 462 dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~ 541 (800)
T 3mwy_W 462 DVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGK 541 (800)
T ss_dssp GGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----
T ss_pred hhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccc
Confidence 0 00000000000
Q ss_pred ---------EeccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcC
Q 038133 495 ---------MMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563 (671)
Q Consensus 495 ---------~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g 563 (671)
.+..+.|+..|..+|... .+.++||||+....++.|...|...|+.+..+||+++..+|..+++.|+++
T Consensus 542 ~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 542 MTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred ccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 011345777788888775 367999999999999999999999999999999999999999999999986
Q ss_pred CC---cEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCcc--EEEEEecCC
Q 038133 564 RY---NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG--VATTFLTFH 621 (671)
Q Consensus 564 ~~---~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g--~ai~~~~~~ 621 (671)
.. .+||+|.+++.|||++.+++||+||+|||+..+.|++||++|.|+.. .+|.|++..
T Consensus 622 ~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 622 DSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 54 49999999999999999999999999999999999999999999764 445555554
No 75
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=4.4e-29 Score=243.03 Aligned_cols=180 Identities=39% Similarity=0.606 Sum_probs=150.7
Q ss_pred HHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCC
Q 038133 468 RKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGG 547 (671)
Q Consensus 468 ~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~ 547 (671)
..|+.+|..+.++........+.+.+..+....|...|.+++... ++++||||+++..++.++..|...++.+..+||+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 468899999999888888889999999999999999999999874 5689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCC-CchHH
Q 038133 548 KSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH-DTDVF 626 (671)
Q Consensus 548 ~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~-d~~~~ 626 (671)
+++.+|..+++.|++|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++. +..+.
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976 77889
Q ss_pred HHHHHHHHhcCCCCChhHHhch
Q 038133 627 YDLKQMLIQSNSPVPPELAKHE 648 (671)
Q Consensus 627 ~~l~~~l~~~~~~vp~~L~~~~ 648 (671)
..|.+.+....+.+|++|.++.
T Consensus 168 ~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 168 MDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHccCcCCHHHHhhc
Confidence 9999999999999999998774
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=9.5e-27 Score=267.61 Aligned_cols=175 Identities=21% Similarity=0.206 Sum_probs=135.1
Q ss_pred cceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhh
Q 038133 449 YRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKN 526 (671)
Q Consensus 449 ~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~ 526 (671)
..|+++||||+++..... .. ..+........ .....+.......+...|...|... .+.++||||+++..
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~--~~~~~~~r~~~--l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SG--RVVEQIIRPTG--LLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CS--EEEEECSCTTC--CCCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh----hh--CeeeeeeccCC--CCCCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 578999999998754221 11 11111111100 0111122223334555555555432 47899999999999
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCC-----CCCHHHHHHH
Q 038133 527 ADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM-----PGNIEMYTHR 601 (671)
Q Consensus 527 ~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~-----p~s~~~y~Qr 601 (671)
++.+++.|...|+.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||++|. |.|..+|+||
T Consensus 452 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr 531 (664)
T 1c4o_A 452 AEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 531 (664)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHH
T ss_pred HHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred hcccCCCCCccEEEEEecCCCchHHHHHHHH
Q 038133 602 IGRTGRAGKTGVATTFLTFHDTDVFYDLKQM 632 (671)
Q Consensus 602 iGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~ 632 (671)
+||+||.| .|.|++|++..+......+...
T Consensus 532 ~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~ 561 (664)
T 1c4o_A 532 IGRAARNA-RGEVWLYADRVSEAMQRAIEET 561 (664)
T ss_dssp HGGGTTST-TCEEEEECSSCCHHHHHHHHHH
T ss_pred HCccCcCC-CCEEEEEEcCCCHHHHHHHHHH
Confidence 99999995 8999999998877665555443
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=231.04 Aligned_cols=167 Identities=44% Similarity=0.677 Sum_probs=143.6
Q ss_pred ccccceeEEEEEeccchhHHHHHHHHHHh-CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhc
Q 038133 484 KATELISQHVVMMKESEKFSRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT 562 (671)
Q Consensus 484 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~ 562 (671)
.....+.+.+..+....|...|.+++... .++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 34567899999999999999999999986 47899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCCCh
Q 038133 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPP 642 (671)
Q Consensus 563 g~~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~ 642 (671)
|.++|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.|++|+++.+...+..+.+.+....+.+|+
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhchhc
Q 038133 643 ELAKHEAS 650 (671)
Q Consensus 643 ~L~~~~~~ 650 (671)
+|.++...
T Consensus 175 ~l~~~a~~ 182 (185)
T 2jgn_A 175 WLENMAYE 182 (185)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99887543
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1e-25 Score=258.97 Aligned_cols=174 Identities=20% Similarity=0.235 Sum_probs=134.6
Q ss_pred cceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEEeccchhHHHHHHHHHHh--CCCcEEEEecChhh
Q 038133 449 YRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--GDKTAIVFVNTKKN 526 (671)
Q Consensus 449 ~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~ 526 (671)
..|+++||||+++..... ........+...+... . .+.......+...|...+... .+.++||||+++..
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~-p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLD-P---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCC-C---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCCC-C---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 578999999998754322 1111111111111111 1 122223334555555555432 46799999999999
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCCCCcEEEEcCC-----CCCHHHHHHH
Q 038133 527 ADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM-----PGNIEMYTHR 601 (671)
Q Consensus 527 ~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp~v~~VI~~d~-----p~s~~~y~Qr 601 (671)
++.+++.|...|+.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+++. |.+..+|+||
T Consensus 458 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr 537 (661)
T 2d7d_A 458 SEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 537 (661)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred hcccCCCCCccEEEEEecCCCchHHHHHHH
Q 038133 602 IGRTGRAGKTGVATTFLTFHDTDVFYDLKQ 631 (671)
Q Consensus 602 iGR~gR~G~~g~ai~~~~~~d~~~~~~l~~ 631 (671)
+||+||. ..|.|++|+++.+......+.+
T Consensus 538 ~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 566 (661)
T 2d7d_A 538 IGRAARN-AEGRVIMYADKITKSMEIAINE 566 (661)
T ss_dssp HHTTTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred hCcccCC-CCCEEEEEEeCCCHHHHHHHHH
Confidence 9999998 6899999999987765554443
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.3e-26 Score=219.87 Aligned_cols=152 Identities=39% Similarity=0.642 Sum_probs=143.6
Q ss_pred cccceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC
Q 038133 485 ATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR 564 (671)
Q Consensus 485 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~ 564 (671)
....+.+.+..+....|...|..++....++++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|.
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34568888888999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 565 YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 565 ~~VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
++|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.|++|+++.+...+..+.+.+...
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998888876443
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=6.1e-27 Score=222.55 Aligned_cols=159 Identities=33% Similarity=0.591 Sum_probs=142.9
Q ss_pred ceeEEEEEeccch-hHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCc
Q 038133 488 LISQHVVMMKESE-KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN 566 (671)
Q Consensus 488 ~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~ 566 (671)
.+.|.+..+.... |...|..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 4677777777666 999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCCCCChhHHh
Q 038133 567 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAK 646 (671)
Q Consensus 567 VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~~vp~~L~~ 646 (671)
|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.|++|+++.+...+..+..++......+|..+.+
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 162 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777777766543
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1e-26 Score=222.51 Aligned_cols=160 Identities=32% Similarity=0.510 Sum_probs=144.7
Q ss_pred cceeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCc
Q 038133 487 ELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN 566 (671)
Q Consensus 487 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~ 566 (671)
..+.+.+..+....|...|..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 46788888888999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCC-CchHHHHHHHHHHhcCCCCChhHH
Q 038133 567 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPELA 645 (671)
Q Consensus 567 VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~-d~~~~~~l~~~l~~~~~~vp~~L~ 645 (671)
|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.|++|+++. +...+..+.+.+......+|.++.
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 163 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC----
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhc
Confidence 9999999999999999999999999999999999999999999999999999875 557778888887777777777654
Q ss_pred h
Q 038133 646 K 646 (671)
Q Consensus 646 ~ 646 (671)
.
T Consensus 164 ~ 164 (172)
T 1t5i_A 164 I 164 (172)
T ss_dssp -
T ss_pred h
Confidence 3
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=219.17 Aligned_cols=155 Identities=31% Similarity=0.514 Sum_probs=138.8
Q ss_pred ccceeEEEEEeccch-hHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCC
Q 038133 486 TELISQHVVMMKESE-KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR 564 (671)
Q Consensus 486 ~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~ 564 (671)
...+.+.+..+.... |...|..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 456888888887655 9999999999887889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccccccCCCCCCcEEEEcCCC------CCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhcCC
Q 038133 565 YNVLVATDVAGRGIDIPDVAHVINYDMP------GNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNS 638 (671)
Q Consensus 565 ~~VLVaT~~~~~GiDIp~v~~VI~~d~p------~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~~~ 638 (671)
++|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.|++|+++.+...+..+.+.+.....
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 164 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIK 164 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCE
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999 8999999999999999999999999999998888888887765544
Q ss_pred CC
Q 038133 639 PV 640 (671)
Q Consensus 639 ~v 640 (671)
.+
T Consensus 165 ~~ 166 (175)
T 2rb4_A 165 QL 166 (175)
T ss_dssp EE
T ss_pred cc
Confidence 33
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=1.9e-25 Score=221.22 Aligned_cols=148 Identities=36% Similarity=0.518 Sum_probs=137.3
Q ss_pred eeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEE
Q 038133 489 ISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568 (671)
Q Consensus 489 i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VL 568 (671)
+.+.........|...|..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 34455566778899999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 569 VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 569 VaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
|||+++++|||+|++++||+||+|++...|.||+||+||.|+.|.|++|+++.+...+..+.+.+...
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999998888887665
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=1.3e-24 Score=225.62 Aligned_cols=148 Identities=36% Similarity=0.521 Sum_probs=135.6
Q ss_pred eeEEEEEeccchhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEE
Q 038133 489 ISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568 (671)
Q Consensus 489 i~~~~~~~~~~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VL 568 (671)
+.+.+..+....|...|..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 45677778888999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 569 VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 569 VaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
|||+++++|||||++++||+||+|++...|+||+||+||.|+.|.|++|+++.+...+..+.+.+...
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999998888888887654
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.84 E-value=6.8e-26 Score=216.39 Aligned_cols=149 Identities=37% Similarity=0.543 Sum_probs=137.5
Q ss_pred ceeEEEEEecc-chhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCc
Q 038133 488 LISQHVVMMKE-SEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN 566 (671)
Q Consensus 488 ~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~ 566 (671)
.+.+.+..+.. ..|...|..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 34556666666 78899999999887778999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCchHHHHHHHHHHhc
Q 038133 567 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636 (671)
Q Consensus 567 VLVaT~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~ai~~~~~~d~~~~~~l~~~l~~~ 636 (671)
|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.|++|++..+...+..+.+.+...
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 9999999999999999999999999999999999999999999999999999999988888888876554
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=5.4e-23 Score=231.63 Aligned_cols=315 Identities=15% Similarity=0.182 Sum_probs=173.2
Q ss_pred cCCCCCcHHHHHHHHH----HhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHH
Q 038133 269 VGYKNPSPIQMAAIPL----GLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE 344 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~----il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~ 344 (671)
.|| .|+|+|.+++.. +..++++++.||||+|||++|++|++.. +++++|++||++|+.|+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~ 68 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIY 68 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHH
Confidence 467 899999998654 4588999999999999999999998653 578999999999999998
Q ss_pred HHHHHHHhhcCcEEEEEECCCch--------H-H--------------------------------------HHHHHhcC
Q 038133 345 EETVKFAHYLGIKVVSIVGGQSI--------E-E--------------------------------------QGFRIRQG 377 (671)
Q Consensus 345 ~~~~k~~~~~~i~v~~~~gg~~~--------~-~--------------------------------------~~~~l~~~ 377 (671)
+++.+ ++++++.+.|.... . + .......+
T Consensus 69 ~~~~~----l~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~ 144 (540)
T 2vl7_A 69 KNAKL----LGLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKD 144 (540)
T ss_dssp HHHGG----GTCCEEEC---------------------------------------------------------CTTGGG
T ss_pred HHHHh----cCCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhc
Confidence 77665 45666555542210 0 0 00111246
Q ss_pred CeEEEEcchHHHHHHhhccc-------ccCCccEEEEcccchhhccC-------ChHHHH--------------------
Q 038133 378 CEVVIATPGRLIDCLERRYA-------VLNQCNYVVLDEADRMIDMG-------FEPQVV-------------------- 423 (671)
Q Consensus 378 ~~IiI~Tp~~L~~~l~~~~~-------~l~~~~~vViDEah~~~~~~-------f~~~i~-------------------- 423 (671)
++|||+||..|++...+... .+....+|||||||+|.+.. ....+.
T Consensus 145 adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l 224 (540)
T 2vl7_A 145 KDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKV 224 (540)
T ss_dssp CSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred CCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 79999999999886654332 24667899999999984310 000000
Q ss_pred --------HHHHhCCCCC------CCCCC--c------------------------------------------------
Q 038133 424 --------GVLDAMPSSN------LKPEN--E------------------------------------------------ 439 (671)
Q Consensus 424 --------~il~~l~~~~------~~~~~--~------------------------------------------------ 439 (671)
..+..+...+ ..+.. +
T Consensus 225 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 304 (540)
T 2vl7_A 225 KDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKV 304 (540)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEe
Confidence 0011100000 00000 0
Q ss_pred ----hhhhhhh-hhcceEEEEeccCCHHHHHHHHHhcCCCeEEEECCCCccccceeEEEEE--ec---c------chhHH
Q 038133 440 ----DEELDEK-RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVM--MK---E------SEKFS 503 (671)
Q Consensus 440 ----~~~~~~~-~~~~q~i~~SAT~~~~~~~l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~--~~---~------~~k~~ 503 (671)
...+... .....+|++||||+|... +...| ...+...- .....+.. +. . .....
T Consensus 305 P~~~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f-----~~~~~~~~----g~~~~~~~~~l~s~f~~r~~~~~~~~~ 374 (540)
T 2vl7_A 305 PSDVNQLIEDALNVKTFKVLMSGTLPESLT-LTNSY-----KIVVNESY----GRGEYYYCPNVTSELRKRNSNIPIYSI 374 (540)
T ss_dssp CSCHHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEE-----EEECCCC-----CCCEEEECTTCCCCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCccCCeEEEcccCCCCcc-cchhc-----CCchhhee----cCCcceeccccCCCcccccCHHHHHHH
Confidence 0000000 001124889999988210 00011 01110000 00011110 00 0 01112
Q ss_pred HHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEE--ecccccccCCCC
Q 038133 504 RLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV--ATDVAGRGIDIP 581 (671)
Q Consensus 504 ~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLV--aT~~~~~GiDIp 581 (671)
.+..++.. .++.+|||++|...++.+++.|.. .. ..++|.. ..++.+++.|+.+. .||+ +|+.+++|||+|
T Consensus 375 ~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~ 447 (540)
T 2vl7_A 375 LLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFR 447 (540)
T ss_dssp HHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-----------
T ss_pred HHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecC
Confidence 23333332 467899999999999999988865 33 4556654 46888999999864 5776 889999999999
Q ss_pred C----CcEEEEcCCCCC-H-----------------------------HHHHHHhcccCCCCCccEEEEEec
Q 038133 582 D----VAHVINYDMPGN-I-----------------------------EMYTHRIGRTGRAGKTGVATTFLT 619 (671)
Q Consensus 582 ~----v~~VI~~d~p~s-~-----------------------------~~y~QriGR~gR~G~~g~ai~~~~ 619 (671)
+ +++||++++|.. + ..+.|.+||+-|...+--++++++
T Consensus 448 ~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 448 EKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp ----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred CCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 8 899999998851 1 224699999999865433444554
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=2.9e-23 Score=205.13 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=111.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH-HHHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ-IEEET 347 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q-i~~~~ 347 (671)
.....|+|+|.++++.++.++++++++|||+|||++|+++++..+.... ....++++||+||+++|+.| +.+.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK-----KASEPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHH-----HTTCCCCEEEEESSHHHHHHHHHHTH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc-----cccCCCcEEEEECHHHHHHHHHHHHH
Confidence 3455899999999999999999999999999999999999988765311 11246789999999999999 77888
Q ss_pred HHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcc------cccCCccEEEEcccchhhccCChHH
Q 038133 348 VKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY------AVLNQCNYVVLDEADRMIDMGFEPQ 421 (671)
Q Consensus 348 ~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~------~~l~~~~~vViDEah~~~~~~f~~~ 421 (671)
..+... ++.+..++|+.........+..+++|+|+||+.|...+.... ..+.++++|||||||++.+.++...
T Consensus 104 ~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 104 QPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp HHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHH
T ss_pred HHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHH
Confidence 887664 788888888876555444555679999999999998887643 4578899999999999987766555
Q ss_pred HH
Q 038133 422 VV 423 (671)
Q Consensus 422 i~ 423 (671)
+.
T Consensus 183 ~~ 184 (216)
T 3b6e_A 183 IM 184 (216)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=6.5e-21 Score=215.34 Aligned_cols=322 Identities=16% Similarity=0.077 Sum_probs=201.6
Q ss_pred CCCCCcHHHHHHHHHH----hCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHH
Q 038133 270 GYKNPSPIQMAAIPLG----LQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345 (671)
Q Consensus 270 g~~~p~~~Q~~ai~~i----l~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~ 345 (671)
|| .|+|+|.+++..+ ..++++++.||||+|||++|++|++. .+++++|++||++|+.|+.+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~--------------~~~~v~i~~pt~~l~~q~~~ 65 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE--------------VKPKVLFVVRTHNEFYPIYR 65 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH--------------HCSEEEEEESSGGGHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh--------------CCCeEEEEcCCHHHHHHHHH
Confidence 45 7999999977654 47899999999999999999999987 26789999999999999999
Q ss_pred HHHHHHhhcCcEEEEEECCCch---------------------------------HHHH------------------HHH
Q 038133 346 ETVKFAHYLGIKVVSIVGGQSI---------------------------------EEQG------------------FRI 374 (671)
Q Consensus 346 ~~~k~~~~~~i~v~~~~gg~~~---------------------------------~~~~------------------~~l 374 (671)
++..+....+++++.+.|..+. .... ...
T Consensus 66 ~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~ 145 (551)
T 3crv_A 66 DLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNS 145 (551)
T ss_dssp HHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhh
Confidence 9998877778888888774321 1111 222
Q ss_pred hcCCeEEEEcchHHHHHHhhcccc-cCCccEEEEcccchhhccCCh--------HHHHH----------------HHHhC
Q 038133 375 RQGCEVVIATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFE--------PQVVG----------------VLDAM 429 (671)
Q Consensus 375 ~~~~~IiI~Tp~~L~~~l~~~~~~-l~~~~~vViDEah~~~~~~f~--------~~i~~----------------il~~l 429 (671)
..+++|||+||+.|++...+.... .....+|||||||+|.+ ... ..+.. +...+
T Consensus 146 ~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l 224 (551)
T 3crv_A 146 LYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQL 224 (551)
T ss_dssp GGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred hhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999876544332 24678999999999877 310 11111 11111
Q ss_pred CC----C-C-----CCCC------------------------------------------------------------Cc
Q 038133 430 PS----S-N-----LKPE------------------------------------------------------------NE 439 (671)
Q Consensus 430 ~~----~-~-----~~~~------------------------------------------------------------~~ 439 (671)
.. . . ..+. ..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~ 304 (551)
T 3crv_A 225 REVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEI 304 (551)
T ss_dssp TTSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCT
T ss_pred HHHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCH
Confidence 00 0 0 0000 00
Q ss_pred hhhhhhhhhc-ceEEEEeccCCHHHHHHHHHhcCC--CeEE-----EECCCCccccceeEEEEEe----cc------chh
Q 038133 440 DEELDEKRIY-RTTYMFSATMPPAVERLARKYLRN--PVVV-----TIGTAGKATELISQHVVMM----KE------SEK 501 (671)
Q Consensus 440 ~~~~~~~~~~-~q~i~~SAT~~~~~~~l~~~~l~~--p~~i-----~i~~~~~~~~~i~~~~~~~----~~------~~k 501 (671)
...+...... +.+|++|||+.| ...+.. .++- +... .++.+. ..+...++ +. ..-
T Consensus 305 ~~~l~~~~~~~~svIltSaTL~~-~~~~~~-~lGl~~~~~~~~~~~~~~spf-----~~~~~l~v~~~~~~~~~~r~~~~ 377 (551)
T 3crv_A 305 SYYLNLLNDNELSIILMSGTLPP-REYMEK-VWGIKRNMLYLDVEREIQKRV-----SGSYECYIGVDVTSKYDMRSDNM 377 (551)
T ss_dssp HHHHGGGGCTTCEEEEEESSCCC-HHHHHH-TSCCCSCEEEEEHHHHTTSCC-----SCEEEEEEECSCCCCTTTCCHHH
T ss_pred HHHHHHHhccCceEEEEeeCCCc-HHHHHH-HhCCCCccccccceeecCCcC-----CCceEEEEeCCCCCccccCCHHH
Confidence 0000001112 788999999987 333333 3332 2211 112221 11211111 11 111
Q ss_pred HHHHHHHHHH---hCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEec--ccccc
Q 038133 502 FSRLQRLLDE---LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT--DVAGR 576 (671)
Q Consensus 502 ~~~L~~ll~~---~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT--~~~~~ 576 (671)
...+.+.+.. ..++.+|||++|...++.+++. .+..+.+-..+++ +..+++.|+.+.--||+|| ..+++
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~E 451 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAE 451 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecc
Confidence 2334443332 2477999999999999999872 3444444333455 3457788854444799998 69999
Q ss_pred cCCCC-----CCcEEEEcCCCCC---------------------H---------HHHHHHhcccCCCCCccEEEEEecC
Q 038133 577 GIDIP-----DVAHVINYDMPGN---------------------I---------EMYTHRIGRTGRAGKTGVATTFLTF 620 (671)
Q Consensus 577 GiDIp-----~v~~VI~~d~p~s---------------------~---------~~y~QriGR~gR~G~~g~ai~~~~~ 620 (671)
|||+| .++.||....|.. . ..+.|.+||+-|...+--++++++.
T Consensus 452 GiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 452 GIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp SSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred cccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 99999 3788887776531 1 1134999999998766445555543
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=193.18 Aligned_cols=178 Identities=21% Similarity=0.173 Sum_probs=129.8
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHH
Q 038133 264 RAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343 (671)
Q Consensus 264 ~~i~~~g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi 343 (671)
......+...++++|.++++.+..|++++++||||||||+++.++++..+.... ...+..++|++|+++|+.|+
T Consensus 52 ~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------~~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 52 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND------RAAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp HHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------CGGGCEEEEEESSHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------CCCceEEEEeccchHHHHHH
Confidence 333333444678999999999999999999999999999999999888765421 12356899999999999999
Q ss_pred HHHHHHHHh-hcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchh-hccCCh-H
Q 038133 344 EEETVKFAH-YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRM-IDMGFE-P 420 (671)
Q Consensus 344 ~~~~~k~~~-~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~-~~~~f~-~ 420 (671)
.+.+..... ..+..+..-..... .....+++|+|+||++|.+.+.. .+.++++|||||||++ ++.+|. .
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHH
Confidence 877765432 22333332222111 01124588999999999999876 4889999999999986 777776 4
Q ss_pred HHHHHHHhCCCCCCCCCCchhhhhhhhhcceEEEEeccCCHHHHHHHHHhcCCCe
Q 038133 421 QVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPV 475 (671)
Q Consensus 421 ~i~~il~~l~~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~p~ 475 (671)
.+..++...+ ..|+++||||++... ++..+...|.
T Consensus 198 ~l~~i~~~~~------------------~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 198 VLRDVVQAYP------------------EVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHCT------------------TSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHhhCC------------------CCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 5556665553 378999999999876 5666655554
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.84 E-value=2.4e-21 Score=200.24 Aligned_cols=155 Identities=17% Similarity=0.242 Sum_probs=124.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.|+|+|.++++.++.+++.++++|||+|||++++.++...+.. .+.++||+|||++|+.|+.+.+.++..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------~~~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----------YEGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH----------CSSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc----------CCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 7999999999999988889999999999999998888776643 344899999999999999999999876
Q ss_pred hcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCCC
Q 038133 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432 (671)
Q Consensus 353 ~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~~ 432 (671)
..+..+..++||..... ....+++|+|+||+.+.... ...+.++++|||||||++.+ ..+..++..+..
T Consensus 183 ~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~- 251 (282)
T 1rif_A 183 FSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATG----KSISSIISGLNN- 251 (282)
T ss_dssp CCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT-
T ss_pred cccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc-
Confidence 66677888888876433 22346899999999875432 23467899999999999964 456667666643
Q ss_pred CCCCCCchhhhhhhhhcceEEEEeccCCHHHH
Q 038133 433 NLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464 (671)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~~~ 464 (671)
..+++++|||++....
T Consensus 252 ----------------~~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 252 ----------------CMFKFGLSGSLRDGKA 267 (282)
T ss_dssp ----------------CCEEEEECSSCCTTST
T ss_pred ----------------CCeEEEEeCCCCCcch
Confidence 4789999999986543
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.82 E-value=5.7e-19 Score=201.23 Aligned_cols=326 Identities=17% Similarity=0.166 Sum_probs=196.1
Q ss_pred CCcHHHHHHHH----HHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 273 NPSPIQMAAIP----LGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 273 ~p~~~Q~~ai~----~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
.|+|.|.+++. .+..|+++++.||||+|||++|++|++.++.. .+++++|++||++|+.|+.+++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~----------~~~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE----------RKLKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH----------HTCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh----------cCCeEEEECCCHHHHHHHHHHHH
Confidence 68999999885 44589999999999999999999999998753 46899999999999999999999
Q ss_pred HHHhhcCcEEEEEECCCchHH--------------------H--------------------------------------
Q 038133 349 KFAHYLGIKVVSIVGGQSIEE--------------------Q-------------------------------------- 370 (671)
Q Consensus 349 k~~~~~~i~v~~~~gg~~~~~--------------------~-------------------------------------- 370 (671)
.+....+++++.+.|+.+.-- .
T Consensus 73 ~l~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die 152 (620)
T 4a15_A 73 SLSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAE 152 (620)
T ss_dssp HHHHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHH
T ss_pred HHhhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHH
Confidence 998877888877766421000 0
Q ss_pred ----------------HHHHhcCCeEEEEcchHHHHHHhhcc-----cccCCccEEEEcccchhhcc-------------
Q 038133 371 ----------------GFRIRQGCEVVIATPGRLIDCLERRY-----AVLNQCNYVVLDEADRMIDM------------- 416 (671)
Q Consensus 371 ----------------~~~l~~~~~IiI~Tp~~L~~~l~~~~-----~~l~~~~~vViDEah~~~~~------------- 416 (671)
.......++|||+++..|++...+.. .....-.+|||||||++.+.
T Consensus 153 ~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~ 232 (620)
T 4a15_A 153 EFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVES 232 (620)
T ss_dssp HHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHH
T ss_pred HHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHH
Confidence 00111258899999988876553321 11234579999999986430
Q ss_pred -------------CC------hHH--------HHHHHHhCCCC-------------------------------------
Q 038133 417 -------------GF------EPQ--------VVGVLDAMPSS------------------------------------- 432 (671)
Q Consensus 417 -------------~f------~~~--------i~~il~~l~~~------------------------------------- 432 (671)
.+ ... +..+...+...
T Consensus 233 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 312 (620)
T 4a15_A 233 LNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGE 312 (620)
T ss_dssp HHHHHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 00 000 00000000000
Q ss_pred -----------CCCCC--------------C--c--------------------hhhhhhhhhcceEEEEeccCCHHHHH
Q 038133 433 -----------NLKPE--------------N--E--------------------DEELDEKRIYRTTYMFSATMPPAVER 465 (671)
Q Consensus 433 -----------~~~~~--------------~--~--------------------~~~~~~~~~~~q~i~~SAT~~~~~~~ 465 (671)
..... . . ...+... ..+.+|++|||+.| ...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~-~~~~~il~SaTL~p-~~~ 390 (620)
T 4a15_A 313 YVENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVL-KESKTIHMSGTLDP-FDF 390 (620)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGG-GGSEEEEEESSCCS-HHH
T ss_pred HHHhhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHH-hCCeEEEEccCCCc-HHH
Confidence 00000 0 0 0000001 24467899999987 343
Q ss_pred HHHHhcCCCeEEEECCCCccccceeEEEEEe---c------cchhHHH----HHHHHHHhCCCcEEEEecChhhHHHHHH
Q 038133 466 LARKYLRNPVVVTIGTAGKATELISQHVVMM---K------ESEKFSR----LQRLLDELGDKTAIVFVNTKKNADMVAK 532 (671)
Q Consensus 466 l~~~~l~~p~~i~i~~~~~~~~~i~~~~~~~---~------~~~k~~~----L~~ll~~~~~~~iIVF~~~~~~~~~l~~ 532 (671)
+....--.+..+.++.+..... +.+... + ...-... +..++.. .++.++||++|...++.+++
T Consensus 391 ~~~~lGl~~~~~~~~spf~~~~---~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~ 466 (620)
T 4a15_A 391 YSDITGFEIPFKKIGEIFPPEN---RYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVEN 466 (620)
T ss_dssp HHHHHCCCCCEEECCCCSCGGG---EEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTS
T ss_pred HHHHhCCCceeeecCCCCCHHH---eEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHH
Confidence 4333222233344443322211 111111 1 1111222 3333333 36779999999999999999
Q ss_pred HHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEec--ccccccCCCCC--CcEEEEcCCCCC--------------
Q 038133 533 NLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT--DVAGRGIDIPD--VAHVINYDMPGN-------------- 594 (671)
Q Consensus 533 ~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT--~~~~~GiDIp~--v~~VI~~d~p~s-------------- 594 (671)
.|.. .... ...+++...+..+++.|+ +.-.||+|| ..+++|||+|+ +..||....|..
T Consensus 467 ~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~ 542 (620)
T 4a15_A 467 RVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYE 542 (620)
T ss_dssp SCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHH
T ss_pred HHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 8872 2222 455566678999999999 888899997 48999999987 778998887741
Q ss_pred ---------------HHHHHHHhcccCCCCCccEEEEEe
Q 038133 595 ---------------IEMYTHRIGRTGRAGKTGVATTFL 618 (671)
Q Consensus 595 ---------------~~~y~QriGR~gR~G~~g~ai~~~ 618 (671)
+....|.+||+-|.-.+--+++++
T Consensus 543 ~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 543 RKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp HHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred HhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEE
Confidence 111359999999986654445554
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=1e-18 Score=179.03 Aligned_cols=126 Identities=18% Similarity=0.306 Sum_probs=101.3
Q ss_pred eccchhHHHHHHHHHHh--CCCcEEEEecChhhHHHHHHHHHHc-CCeEEEecCCCCHHHHHHHHHHhhcC-CCc-EEEe
Q 038133 496 MKESEKFSRLQRLLDEL--GDKTAIVFVNTKKNADMVAKNLDKL-GYRVTTLHGGKSQEQREISLEGFRTK-RYN-VLVA 570 (671)
Q Consensus 496 ~~~~~k~~~L~~ll~~~--~~~~iIVF~~~~~~~~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~l~~F~~g-~~~-VLVa 570 (671)
...+.|+..|.++|... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| .+. +||+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 45678999999999876 6889999999999999999999885 99999999999999999999999998 677 7899
Q ss_pred cccccccCCCCCCcEEEEcCCCCCHHHHHHHhcccCCCCCccEE--EEEecCC
Q 038133 571 TDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVA--TTFLTFH 621 (671)
Q Consensus 571 T~~~~~GiDIp~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~a--i~~~~~~ 621 (671)
|+++++|||++++++||+||+||++..|.|++||++|.|+.+.+ |.|++..
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999987654 5566654
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.77 E-value=4.3e-18 Score=171.18 Aligned_cols=139 Identities=18% Similarity=0.129 Sum_probs=110.4
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
..|+++|.++++.++.++++++++|||+|||.+++.++.. .+.++||+||+++|+.|+.+.+.+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~--------------~~~~~liv~P~~~L~~q~~~~~~~-- 155 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE--------------LSTPTLIVVPTLALAEQWKERLGI-- 155 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH--------------SCSCEEEEESSHHHHHHHHHHHGG--
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH--------------cCCCEEEEeCCHHHHHHHHHHHHh--
Confidence 4899999999999999999999999999999998877644 256799999999999999888776
Q ss_pred hhcCcE-EEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCC
Q 038133 352 HYLGIK-VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430 (671)
Q Consensus 352 ~~~~i~-v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~ 430 (671)
+++. +..+.|+.. ...+|+|+||+.+...... ....+++|||||||++.+..+. .++..++
T Consensus 156 --~~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~~ 217 (237)
T 2fz4_A 156 --FGEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI 217 (237)
T ss_dssp --GCGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTCC
T ss_pred --CCCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhcc
Confidence 4777 777777654 2578999999998765542 1356899999999999776543 4555543
Q ss_pred CCCCCCCCchhhhhhhhhcceEEEEeccCCHH
Q 038133 431 SSNLKPENEDEELDEKRIYRTTYMFSATMPPA 462 (671)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 462 (671)
..+++++|||++..
T Consensus 218 ------------------~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 218 ------------------APFRLGLTATFERE 231 (237)
T ss_dssp ------------------CSEEEEEEESCC--
T ss_pred ------------------CCEEEEEecCCCCC
Confidence 25689999998754
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.82 E-value=6.3e-09 Score=118.31 Aligned_cols=135 Identities=25% Similarity=0.257 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCChHH--HHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 275 SPIQMAAIPLGLQQRDVIGIAETGSGKT--AAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 275 ~~~Q~~ai~~il~~rd~ii~a~TGsGKT--~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
++.|..|++.++.++.+++.|++||||| ++++++++..+.. ..+.++++++||..+|.++.+.+...+.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---------~~~~~vll~APTg~AA~~L~e~~~~~~~ 221 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALR 221 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---------SCCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---------cCCCeEEEEeCChhHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999 5566666554321 2467899999999999999988888777
Q ss_pred hcCcEEEEEECCCchHHHHHHHhcCC-eEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCChHHHHHHHHhCCC
Q 038133 353 YLGIKVVSIVGGQSIEEQGFRIRQGC-EVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 431 (671)
Q Consensus 353 ~~~i~v~~~~gg~~~~~~~~~l~~~~-~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~~~i~~il~~l~~ 431 (671)
.+++...... +... . .... .++-.+|+.. . +.........+++||||||+ |++ .+.+..++..++.
T Consensus 222 ~l~l~~~~~~-~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~ 288 (608)
T 1w36_D 222 QLPLTDEQKK-RIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPD 288 (608)
T ss_dssp HSSCCSCCCC-SCSC--C----CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCT
T ss_pred cCCCCHHHHh-ccch--h----hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCC
Confidence 6654311110 0000 0 0011 1122223221 1 11111122378999999999 555 4566778887764
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.26 E-value=4e-06 Score=96.11 Aligned_cols=66 Identities=23% Similarity=0.278 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQRD-VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd-~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
.+.+-|.+|+..++..++ .||.||.|||||.+.+-.+...+. .+.++|+++||..-+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-----------~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK-----------QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh-----------CCCeEEEEcCchHHHHHHHHHHHh
Confidence 578999999999987765 689999999999876555544442 578899999999999987766543
No 96
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.19 E-value=1.1e-05 Score=82.98 Aligned_cols=155 Identities=12% Similarity=0.115 Sum_probs=107.4
Q ss_pred ccchhHHHHHHHHHHhC--CCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccc
Q 038133 497 KESEKFSRLQRLLDELG--DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA 574 (671)
Q Consensus 497 ~~~~k~~~L~~ll~~~~--~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~ 574 (671)
..+.|+..|..+|.... +.++|||++..+..+.+.++|...++.+..+.|.....++. -.++.+.|.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCC
Confidence 45789999999988763 78999999999999999999999999999999985543211 124555666667777
Q ss_pred cccCC-----CCCCcEEEEcCCCCCHHHH-HHHhcccCCCC----CccEEEEEecCCCchHHHHHHHHHHh-cCCCCChh
Q 038133 575 GRGID-----IPDVAHVINYDMPGNIEMY-THRIGRTGRAG----KTGVATTFLTFHDTDVFYDLKQMLIQ-SNSPVPPE 643 (671)
Q Consensus 575 ~~GiD-----Ip~v~~VI~~d~p~s~~~y-~QriGR~gR~G----~~g~ai~~~~~~d~~~~~~l~~~l~~-~~~~vp~~ 643 (671)
+-|+| +..+++||.||..|++..- +|.+-|+.|.| +.-.+|.|++....+. +.-.+.+ .+..-...
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh---~~l~~~~~~~~~~~~~ 257 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH---CRLFFGKKFDKNSREY 257 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH---HHHHHHHHTCTTCHHH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH---HHHHccCCCCcchHHH
Confidence 77786 6789999999999999875 89888888873 4567788887665432 2222222 24445567
Q ss_pred HHhchhc----cCCCCCCCC
Q 038133 644 LAKHEAS----KFKPGTIPD 659 (671)
Q Consensus 644 L~~~~~~----~~~~g~i~~ 659 (671)
|.++.++ ....|.+..
T Consensus 258 l~k~i~a~v~lrd~~G~l~~ 277 (328)
T 3hgt_A 258 LENVTAAMVILRDRLGTLPP 277 (328)
T ss_dssp HHHHHHHHHHGGGSTTCCCT
T ss_pred HHHHHHHHHHHHhhhcCCCc
Confidence 7777665 334455543
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.14 E-value=1.4e-05 Score=91.09 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=54.4
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 271 YKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 271 ~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
+..+++.|..|+..++.+.-+++.||+|+|||.+....+ ..+.. ..+.++|+++||...|.++.+.+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i-~~l~~---------~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLAR---------QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH-HHHHT---------SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH-HHHHH---------cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 456889999999999988889999999999998754433 33332 1467899999999999987776654
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=2.6e-05 Score=90.99 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=54.7
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 271 YKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 271 ~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
+..+++.|.+|+..++.+.-++|.||.|||||.+....+...+. ..+.++|+++||...|.++.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~----------~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSK----------IHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHH----------HHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHh----------CCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 45789999999999998877899999999999775444333322 1367899999999999988777665
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.96 E-value=4.1e-05 Score=86.11 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~ 345 (671)
.+++.|.+|+..++.++.+++.|+.|+|||.+.. .++..+.. .+..+++++||...|..+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~----------~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES----------LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH----------TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh----------cCCeEEEecCcHHHHHHhHh
Confidence 6899999999999999999999999999997643 33344332 57889999999999886554
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.96 E-value=3.6e-05 Score=89.80 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=54.2
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 271 YKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 271 ~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
...+++.|.+|+..++.+.-.++.||.|+|||.+.... +..+.. ..+.++|+++||...|.++.+.+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~-i~~l~~---------~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI-VYHLAR---------QGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHH-HHHHHT---------TCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHH-HHHHHH---------cCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 45689999999999998888999999999999775443 334432 1467899999999999987766544
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.88 E-value=4.9e-05 Score=83.29 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=49.4
Q ss_pred cCCCCCcHHHHHHHHHHhCC-----CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCC-CeEEEEecchhhHHH
Q 038133 269 VGYKNPSPIQMAAIPLGLQQ-----RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEG-PYAVVMAPTRELAQQ 342 (671)
Q Consensus 269 ~g~~~p~~~Q~~ai~~il~~-----rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g-~~vLil~Ptr~La~Q 342 (671)
+.|..+++-|.+|+..++.. ..+++.|+.|||||.+. ..++.++.. .+ ..+++++||...|..
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~----------~~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIS----------TGETGIILAAPTHAAKKI 89 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHH----------TTCCCEEEEESSHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHh----------cCCceEEEecCcHHHHHH
Confidence 46788999999999877532 38999999999999654 444555543 23 479999999988875
Q ss_pred HHH
Q 038133 343 IEE 345 (671)
Q Consensus 343 i~~ 345 (671)
+.+
T Consensus 90 l~~ 92 (459)
T 3upu_A 90 LSK 92 (459)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.74 E-value=0.0016 Score=74.33 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
..+++-|.+|+. ..+..++|.|+.|||||.+.+.-+...+... ......+|++++|+..|.++.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~-------~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVE-------NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTS-------CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhC-------CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 468899999987 2356799999999999987665555444321 1123579999999999999888877764
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.36 E-value=0.0021 Score=68.11 Aligned_cols=119 Identities=10% Similarity=0.125 Sum_probs=79.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.|+|+|...+..+...+-+++..+-+.|||.++...++..+.. ..+..+++++||...|..+...+..++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---------~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---------SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---------CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6899999988876555678999999999998776666554432 2467899999999999988888888776
Q ss_pred hcCc--E--EEEEECCCchHHHHHHHhcCCeEEEEcc--hHHHHHHhhcccccCCccEEEEcccchhhc
Q 038133 353 YLGI--K--VVSIVGGQSIEEQGFRIRQGCEVVIATP--GRLIDCLERRYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 353 ~~~i--~--v~~~~gg~~~~~~~~~l~~~~~IiI~Tp--~~L~~~l~~~~~~l~~~~~vViDEah~~~~ 415 (671)
.++. . +... .... ..+.+|..|.+.+. +.+ .-.++.++|+||+|.+-+
T Consensus 234 ~~P~ll~~~~~~~-~~~~-----I~f~nGs~i~~lsa~~~sl---------rG~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 234 LLPDFLQPGIVEW-NKGS-----IELDNGSSIGAYASSPDAV---------RGNSFAMIYIEDCAFIPN 287 (385)
T ss_dssp HSCTTTSCCEEEE-CSSE-----EEETTSCEEEEEECSHHHH---------HTSCCSEEEEESGGGSTT
T ss_pred hChHhhhhhhccC-CccE-----EEeCCCCEEEEEECCCCCc---------cCCCCCEEEechhhhcCC
Confidence 5541 1 1111 1100 11224555554442 221 134578999999998753
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.75 E-value=0.0061 Score=68.80 Aligned_cols=120 Identities=10% Similarity=0.137 Sum_probs=79.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHh
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~ 352 (671)
.|+|+|...+..+...+-+++.++-|+|||.+....++..+.. ..+..+++++|+...|..+...+..++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~---------~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT---------SSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh---------CCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 6889999988877556779999999999998766555544443 2356899999999999999888888776
Q ss_pred hcC--cEEEEE-ECCCchHHHHHHHhcCCeEEEEc--chHHHHHHhhcccccCCccEEEEcccchhhc
Q 038133 353 YLG--IKVVSI-VGGQSIEEQGFRIRQGCEVVIAT--PGRLIDCLERRYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 353 ~~~--i~v~~~-~gg~~~~~~~~~l~~~~~IiI~T--p~~L~~~l~~~~~~l~~~~~vViDEah~~~~ 415 (671)
.++ +..... ..... ..+.+|..|.+.+ |+.+ . -.+++++|+||+|.+-+
T Consensus 234 ~~p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~l----r-----G~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 234 LLPDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAV----R-----GNSFAMIYIEDCAFIPN 287 (592)
T ss_dssp TSCTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHH----H-----HSCCSEEEEETGGGCTT
T ss_pred hChHhhccccccCCccE-----EEecCCCEEEEEeCCCCCc----c-----CCCcceEEEehhccCCc
Confidence 654 111101 01110 1123455555443 2222 1 22478999999998743
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.41 E-value=0.0056 Score=57.99 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTR 337 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr 337 (671)
|+-.++.|++|+|||..++-.+..+.. .+..++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~-----------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL-----------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-----------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH-----------CCCeEEEEeecc
Confidence 455789999999999887665555442 467889998873
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.38 E-value=0.015 Score=54.37 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCChHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll 307 (671)
.++.++++||+|+|||..+-.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999975443
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.31 E-value=0.0064 Score=58.00 Aligned_cols=39 Identities=13% Similarity=0.030 Sum_probs=29.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTR 337 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr 337 (671)
|+-.++.|++|||||...+-.+..+.. .|.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~-----------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI-----------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH-----------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-----------CCCEEEEEEecc
Confidence 345788999999999887766665542 688899999873
No 108
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.19 E-value=0.014 Score=67.61 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 272 ~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
..++|-|.+|+.. ....++|.|+.|||||.+.+.-+...+... ......+|+|+.|+..|.++.+.+..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~-------~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK-------HVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT-------CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc-------CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4688999998875 356899999999999987665555544321 1133579999999999998877776653
No 109
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.18 E-value=0.022 Score=55.63 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchh
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE 338 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~ 338 (671)
|.-.++.|++|||||..++-.+..+. ..|.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~-----------~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ-----------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH-----------TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH-----------HCCCeEEEEeecCC
Confidence 44578899999999988777776665 36888999998753
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.17 E-value=0.0049 Score=60.32 Aligned_cols=90 Identities=11% Similarity=0.086 Sum_probs=53.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSI 367 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 367 (671)
|.-+++.|++|+|||.+.+-.+..+.. .|.+++++.|...-- ....++..+|+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~-----------~g~kVli~~~~~d~r-----~~~~i~srlG~~~--------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY-----------ADVKYLVFKPKIDTR-----SIRNIQSRTGTSL--------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-----------TTCCEEEEEECCCGG-----GCSSCCCCCCCSS---------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh-----------cCCEEEEEEeccCch-----HHHHHHHhcCCCc---------
Confidence 445788899999999887666655543 577889988765210 0001122222110
Q ss_pred HHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchh
Q 038133 368 EEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRM 413 (671)
Q Consensus 368 ~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~ 413 (671)
..+.+.+...++..+..... -..+++|||||++.+
T Consensus 67 ----------~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ----------PSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp ----------CCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred ----------cccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 12234556666666543221 345899999999964
No 111
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.14 E-value=0.007 Score=69.42 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
.++|-|.+|+.. .+..++|.|+.|||||.+.+.-+...+... ......+|+|+.|+..|.++.+.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~-------~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC-------GYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHH-------CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhc-------CCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 478889988875 356799999999999987665555544320 113467999999999999887777665
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.07 E-value=0.0045 Score=56.51 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.+..++++||+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5678999999999999654
No 113
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.98 E-value=0.0069 Score=58.55 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=29.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecch
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTR 337 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr 337 (671)
-.+++|++|||||..++-.+..+.. .|.+++++.|..
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~-----------~g~kVli~k~~~ 66 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQF-----------AKQHAIVFKPCI 66 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH-----------TTCCEEEEECC-
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-----------CCCEEEEEEecc
Confidence 3678999999999887777766653 688899999975
No 114
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.88 E-value=0.014 Score=62.67 Aligned_cols=84 Identities=18% Similarity=0.176 Sum_probs=50.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 369 (671)
-.++.|+.|+|||..+.-. + .....+|++||++++..+.+.+.+. +. .
T Consensus 163 v~~I~G~aGsGKTt~I~~~----~------------~~~~~lVlTpT~~aa~~l~~kl~~~----~~--------~---- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSR----V------------NFEEDLILVPGRQAAEMIRRRANAS----GI--------I---- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHHH----C------------CTTTCEEEESCHHHHHHHHHHHTTT----SC--------C----
T ss_pred EEEEEcCCCCCHHHHHHHH----h------------ccCCeEEEeCCHHHHHHHHHHhhhc----Cc--------c----
Confidence 3688999999999764222 1 1134699999999998766554321 10 0
Q ss_pred HHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchh
Q 038133 370 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRM 413 (671)
Q Consensus 370 ~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~ 413 (671)
....+-|.|.+.++- .......-.+++||||||-.+
T Consensus 211 ------~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 ------VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp ------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS
T ss_pred ------ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC
Confidence 011234677666532 111111224899999999843
No 115
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.81 E-value=0.013 Score=56.50 Aligned_cols=39 Identities=18% Similarity=0.044 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTR 337 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr 337 (671)
|.-.++.|++|+|||...+..+..+.. .+.+++|+.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~-----------~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIY-----------AKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH-----------TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-----------cCCceEEEEecc
Confidence 445788999999999876666555542 577899999965
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.097 Score=53.86 Aligned_cols=26 Identities=12% Similarity=-0.058 Sum_probs=19.0
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
.+.++++.||+|+|||++.-. ++..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 346799999999999976543 44444
No 117
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.38 E-value=0.17 Score=50.54 Aligned_cols=19 Identities=32% Similarity=0.137 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
..+++.||+|+|||..+-.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4699999999999976543
No 118
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.37 E-value=0.13 Score=48.75 Aligned_cols=141 Identities=20% Similarity=0.176 Sum_probs=72.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIE 368 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~ 368 (671)
..+++..++|.|||.+++-.++..+. .|.+|+|+.-.+.-.. +.+ ..+...+++.+...--+-...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g-----------~G~rV~~vQF~Kg~~~--~gE-~~~l~~L~v~~~~~g~gf~~~ 94 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG-----------HGKNVGVVQFIKGTWP--NGE-RNLLEPHGVEFQVMATGFTWE 94 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH-----------TTCCEEEEESSCCSSC--CHH-HHHHGGGTCEEEECCTTCCCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-----------CCCeEEEEEeeCCCCC--ccH-HHHHHhCCcEEEEcccccccC
Confidence 36999999999999998888888774 6889999854332000 011 112223344433222111100
Q ss_pred HHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchhhccCCh--HHHHHHHHhCCCCCCCCCCchhhhhhh
Q 038133 369 EQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFE--PQVVGVLDAMPSSNLKPENEDEELDEK 446 (671)
Q Consensus 369 ~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~~~f~--~~i~~il~~l~~~~~~~~~~~~~~~~~ 446 (671)
.+...- +. ......+..... .+.-..+++||+||+-..+..++. +.+..++..-|.
T Consensus 95 ~~~~~~----~~--~~a~~~l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~--------------- 152 (196)
T 1g5t_A 95 TQNREA----DT--AACMAVWQHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPG--------------- 152 (196)
T ss_dssp GGGHHH----HH--HHHHHHHHHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT---------------
T ss_pred CCCcHH----HH--HHHHHHHHHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC---------------
Confidence 000000 00 000111122111 122367999999999876655533 445555555443
Q ss_pred hhcceEEEEeccCCHHHHHHH
Q 038133 447 RIYRTTYMFSATMPPAVERLA 467 (671)
Q Consensus 447 ~~~~q~i~~SAT~~~~~~~l~ 467 (671)
...+|+.+-..|+.+..++
T Consensus 153 --~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 153 --HQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp --TCEEEEECSSCCHHHHHHC
T ss_pred --CCEEEEECCCCcHHHHHhC
Confidence 3446666666666655543
No 119
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.33 E-value=0.087 Score=56.61 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=69.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEe-cc-hhhHHHHHHHHHHHHhhcCcEEEEEECCCc
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA-PT-RELAQQIEEETVKFAHYLGIKVVSIVGGQS 366 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~-Pt-r~La~Qi~~~~~k~~~~~~i~v~~~~gg~~ 366 (671)
.-++++|++|+|||.+....+.. +.. .|.++++++ ++ +.-+. +.+..++...++.+.....+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~-l~~----------~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~d 163 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYF-YKK----------RGYKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQN 163 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHH-HHH----------TTCCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH----------cCCeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccCC
Confidence 35788899999999765544433 222 455665544 43 33222 3344455555654433222211
Q ss_pred hHHHHHHHhcCCeEEEEcchHHH-HHHhhcccccCCccEEEEcccchhh---ccCChHHHHHHHHhCCCCCCCCCCchhh
Q 038133 367 IEEQGFRIRQGCEVVIATPGRLI-DCLERRYAVLNQCNYVVLDEADRMI---DMGFEPQVVGVLDAMPSSNLKPENEDEE 442 (671)
Q Consensus 367 ~~~~~~~l~~~~~IiI~Tp~~L~-~~l~~~~~~l~~~~~vViDEah~~~---~~~f~~~i~~il~~l~~~~~~~~~~~~~ 442 (671)
|..+. ..+.. .....+++||||.+-++. +..+-..+..+...+.+
T Consensus 164 ------------------p~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p----------- 212 (433)
T 3kl4_A 164 ------------------PIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP----------- 212 (433)
T ss_dssp ------------------HHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC-----------
T ss_pred ------------------HHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC-----------
Confidence 11111 11111 113578999999998643 33344455555555432
Q ss_pred hhhhhhcceEEEEeccCCHHHHHHHHHhc
Q 038133 443 LDEKRIYRTTYMFSATMPPAVERLARKYL 471 (671)
Q Consensus 443 ~~~~~~~~q~i~~SAT~~~~~~~l~~~~l 471 (671)
...++.++|+........+..|.
T Consensus 213 ------d~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 213 ------DDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp ------SEEEEEEEGGGGGGGHHHHHHHH
T ss_pred ------cceEEEEeCccchHHHHHHHHHh
Confidence 34567788887666656655553
No 120
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.29 E-value=0.043 Score=61.95 Aligned_cols=91 Identities=24% Similarity=0.317 Sum_probs=61.1
Q ss_pred CCcHHHHHHHHHHhC--CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQ--QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~--~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
.+|.-|.+|+..++. ....++.|+-|.|||.+.-+.+ ..+. ..++|.+|+.+-+..+ ..+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~-------------~~~~vtAP~~~a~~~l----~~~ 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA-------------GRAIVTAPAKASTDVL----AQF 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS-------------SCEEEECSSCCSCHHH----HHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH-------------hCcEEECCCHHHHHHH----HHH
Confidence 688999999988886 3457999999999996544433 3321 1369999999888743 333
Q ss_pred HhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEEEEcccchh
Q 038133 351 AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRM 413 (671)
Q Consensus 351 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah~~ 413 (671)
+.. .|-+..|..+.. ...++++||||||=.+
T Consensus 237 ~~~-------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI 267 (671)
T 2zpa_A 237 AGE-------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI 267 (671)
T ss_dssp HGG-------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS
T ss_pred hhC-------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC
Confidence 221 133345655321 2456999999999865
No 121
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.27 E-value=0.041 Score=56.73 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
+..+++.||+|+|||..+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999997543
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.89 E-value=0.064 Score=50.91 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecc
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPT 336 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Pt 336 (671)
++=.++.|++|||||.-.+..+-.+.. .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~-----------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI-----------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH-----------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH-----------cCCeEEEEccc
Confidence 445789999999999776666665553 46889999887
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.82 E-value=0.032 Score=56.24 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=31.3
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHH--HhCCCcEEEEcCCCChHHHHH
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQ-MAAIPL--GLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q-~~ai~~--il~~rd~ii~a~TGsGKT~~~ 305 (671)
|-..|+++.-...+.+.|...-. .+.+ .+.+.. +...+.+++.||+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34567777766776666654311 0000 011111 124567999999999999754
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.67 E-value=0.098 Score=56.55 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
...+++.||+|+|||..+-.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS 149 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35799999999999976433
No 125
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.62 E-value=0.11 Score=49.20 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
+.+++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 689999999999997643
No 126
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.60 E-value=0.29 Score=52.60 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=35.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEe--cchhhHHHHHHHHHHHHhhcCcEEEE
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA--PTRELAQQIEEETVKFAHYLGIKVVS 360 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~--Ptr~La~Qi~~~~~k~~~~~~i~v~~ 360 (671)
-++++|++|+|||.+..-.+. ++.. .|.++++++ |.+.-|. +.+..++...++.+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~~----------~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~ 160 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQK----------RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFG 160 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHT----------TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEEC
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHHH----------CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEe
Confidence 588899999999977654443 3322 466666655 4444332 3455556666766544
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.49 E-value=0.099 Score=54.74 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
+..+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999997543
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.43 E-value=0.17 Score=46.73 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
...++++||+|+|||..+-
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3579999999999997643
No 129
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.30 E-value=0.068 Score=65.47 Aligned_cols=72 Identities=25% Similarity=0.211 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 273 NPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 273 ~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
.+|+-|.++|..- +++++|.|..|||||.+.+--++..+.... .......+|++++|+..|..+.+.+....
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-----~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE-----NPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS-----SCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC-----CCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 5788888888754 779999999999999887666666554310 01134579999999999998887776643
No 130
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.00 E-value=0.18 Score=58.35 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=66.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-ccccCCCCCCcEEEE
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-AGRGIDIPDVAHVIN 588 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~~~GiDIp~v~~VI~ 588 (671)
+.+++|.++++.-+..+++.+... ++.+..+||+++..++..++..+.+|..+|+|+|.. +...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 678999999999888888777654 789999999999999999999999999999999964 556788889998884
Q ss_pred cC
Q 038133 589 YD 590 (671)
Q Consensus 589 ~d 590 (671)
-.
T Consensus 497 DE 498 (780)
T 1gm5_A 497 DE 498 (780)
T ss_dssp ES
T ss_pred cc
Confidence 33
No 131
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.94 E-value=0.24 Score=50.76 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=12.9
Q ss_pred CCccEEEEcccchhh
Q 038133 400 NQCNYVVLDEADRMI 414 (671)
Q Consensus 400 ~~~~~vViDEah~~~ 414 (671)
....+|||||+|.+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 467899999999985
No 132
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.94 E-value=0.068 Score=51.82 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCChHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~l 306 (671)
.++.+++.||+|+|||..+-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999997543
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.73 E-value=0.21 Score=52.40 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3469999999999997643
No 134
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.64 E-value=0.25 Score=45.49 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
...+++.||+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 45799999999999976543
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.63 E-value=0.16 Score=53.35 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
.+++.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999754
No 136
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.54 E-value=0.6 Score=44.04 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
..+++.||+|+|||..+-
T Consensus 39 ~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 359999999999997543
No 137
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.41 E-value=0.38 Score=49.39 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=31.4
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----CCCcEEEEcCCCChHHHHHH
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGL-----QQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il-----~~rd~ii~a~TGsGKT~~~l 306 (671)
|-..|+++.-...+.+.|...-. .|. ..|.+. ..+.+++.||+|+|||..+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 44568887777777777754310 010 011111 23569999999999997643
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.11 E-value=0.27 Score=51.23 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999997543
No 139
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.84 E-value=0.18 Score=51.95 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
..+++.||+|+|||..+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 479999999999997643
No 140
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.19 Score=53.33 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCCCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHH
Q 038133 249 PMRNWAEGKLTPELLRAVERVG---YKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g---~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ 305 (671)
|--+|++.+=-.++.+.|.+.= +..|--++. ..+ ..+.+|+.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~----~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFES----LGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHH----HTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHh----CCCCCCCceEEeCCCCCCHHHHH
Confidence 4467888776666666665431 111211111 111 2478999999999999764
No 141
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.68 E-value=0.13 Score=53.19 Aligned_cols=36 Identities=17% Similarity=0.012 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEcCCCChHHHHHHHHH
Q 038133 274 PSPIQMAAIPLGL----QQR---DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 274 p~~~Q~~ai~~il----~~r---d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+|+|..++..+. +|+ .+++.||.|+|||..+...+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 3567777665544 343 48999999999997655443
No 142
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.68 E-value=0.064 Score=57.65 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=36.2
Q ss_pred CCCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHH
Q 038133 247 PRPMRNWAEGKLTPELLRAVERV---GYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 247 p~pi~~f~e~~l~~~i~~~i~~~---g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ 305 (671)
..|-.+|++.+-..++.+.|.+. .+..|.-++...+ -..+.+|+.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 45677899988888877777643 1222322222111 12468999999999999764
No 143
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.62 E-value=0.26 Score=52.31 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=64.7
Q ss_pred CCCcEEEEecChhhHHHHHHHHHH---cCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccc----ccCCCCCCcE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDK---LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG----RGIDIPDVAH 585 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~---~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~----~GiDIp~v~~ 585 (671)
.++.+||.++++.-+..+++.+.. .++.+..+||+.+..++...+..+..|..+|+|+|.-.- .-++..++.+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 477899999999999999999988 478999999999999988889999999999999995311 1255667888
Q ss_pred EEEcC
Q 038133 586 VINYD 590 (671)
Q Consensus 586 VI~~d 590 (671)
||.-.
T Consensus 143 iViDE 147 (414)
T 3oiy_A 143 VFVDD 147 (414)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 88433
No 144
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.49 E-value=0.15 Score=51.72 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
.++++.||+|+|||..+-.
T Consensus 68 ~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999976543
No 145
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.23 E-value=0.49 Score=48.68 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=29.9
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----CCCcEEEEcCCCChHHHHHH
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGL-----QQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il-----~~rd~ii~a~TGsGKT~~~l 306 (671)
|-.+|++.+-...+.+.|.+.-. .|.. .|.+. ..+.+++.||+|+|||..+-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 34578877666666666643200 0000 01111 23679999999999997643
No 146
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.17 E-value=0.39 Score=50.19 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=29.3
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHH-HHH-HHhCCCcEEEEcCCCChHHHHHH
Q 038133 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMA-AIP-LGLQQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 250 i~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~-ai~-~il~~rd~ii~a~TGsGKT~~~l 306 (671)
-.+|+++.-...+.+.|...-. .|.... .+. .....+.+++.||+|+|||..+-
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 3567776555666666544310 000000 000 11234679999999999997643
No 147
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.09 E-value=0.28 Score=53.08 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
..+|+.||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999997643
No 148
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.04 E-value=0.27 Score=51.96 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
.+.+++.||+|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 149
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.91 E-value=0.54 Score=48.66 Aligned_cols=31 Identities=10% Similarity=0.280 Sum_probs=19.2
Q ss_pred cCCccEEEEcccchhhccCChHHHHHHHHhCC
Q 038133 399 LNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430 (671)
Q Consensus 399 l~~~~~vViDEah~~~~~~f~~~i~~il~~l~ 430 (671)
..+..+|||||+|.| +......+..++...+
T Consensus 132 ~~~~~vlilDE~~~L-~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 132 AHRYKCVIINEANSL-TKDAQAALRRTMEKYS 162 (354)
T ss_dssp --CCEEEEEECTTSS-CHHHHHHHHHHHHHST
T ss_pred CCCCeEEEEeCcccc-CHHHHHHHHHHHHhhc
Confidence 346789999999984 4433445555555543
No 150
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.83 E-value=0.53 Score=51.85 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
+.++++||+|+|||.++-.
T Consensus 78 ~~lLL~GppGtGKTtla~~ 96 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHL 96 (516)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5799999999999976543
No 151
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.80 E-value=0.24 Score=53.04 Aligned_cols=54 Identities=15% Similarity=0.080 Sum_probs=30.9
Q ss_pred CCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHH
Q 038133 249 PMRNWAEGKLTPELLRAVERV---GYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~---g~~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ 305 (671)
|--+|++.+--.++.+.|.+. .+..|--++.-. +-..+.+|+.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 446788876666666665432 111111111100 112467999999999999764
No 152
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.73 E-value=0.62 Score=44.65 Aligned_cols=23 Identities=26% Similarity=0.127 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCChHHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~ 309 (671)
.|.-+++.||+|+|||..+...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 35568999999999996544433
No 153
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.65 E-value=0.64 Score=48.50 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
.+.+++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999997653
No 154
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.64 E-value=0.1 Score=56.09 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=32.2
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHHH
Q 038133 248 RPMRNWAEGKLTPELLRAVERV---GYKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 248 ~pi~~f~e~~l~~~i~~~i~~~---g~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~l 306 (671)
.|--+|++.+--.++.+.|.+. .+..|--++. ..+ -.+.+|+.||+|+|||+.+-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~----~g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQR----VGIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHH----HCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHh----CCCCCCCeEEEECCCCCcHHHHHH
Confidence 3456788877666666666443 1111111111 111 24689999999999997643
No 155
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.23 E-value=0.79 Score=49.39 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=30.1
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHH-HHH-HHhCCCcEEEEcCCCChHHHHHH
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQMA-AIP-LGLQQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~-ai~-~il~~rd~ii~a~TGsGKT~~~l 306 (671)
|-.+|++..-...+.+.|...-. .|.... .+. .....+.+++.||+|+|||..+-
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 44567776666666666653210 000000 000 01123679999999999997643
No 156
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.12 E-value=0.61 Score=50.43 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecc
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPT 336 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Pt 336 (671)
|.-+++.|++|+|||..++..+...... .|..++|+..-
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~----------~g~~Vl~~s~E 241 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK----------TNENVAIFSLE 241 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH----------SSCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh----------CCCcEEEEECC
Confidence 4458999999999997665555444321 35567777643
No 157
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.10 E-value=0.26 Score=49.75 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
++.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 568999999999999764
No 158
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.60 E-value=1.6 Score=40.97 Aligned_cols=72 Identities=25% Similarity=0.298 Sum_probs=52.3
Q ss_pred CCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---h-cCCeEEEEcchHHHHHHhhcccccCCc
Q 038133 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---R-QGCEVVIATPGRLIDCLERRYAVLNQC 402 (671)
Q Consensus 327 g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~-~~~~IiI~Tp~~L~~~l~~~~~~l~~~ 402 (671)
++++||.|+++.-+..+...+.. .++.+..++|+.+..+....+ . ..+.|+|+| +.+.. .+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL----KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccC
Confidence 56799999999999977776654 488999999998766544333 2 258899999 33443 3447788
Q ss_pred cEEEEc
Q 038133 403 NYVVLD 408 (671)
Q Consensus 403 ~~vViD 408 (671)
++||.=
T Consensus 124 ~~VI~~ 129 (191)
T 2p6n_A 124 QHVINY 129 (191)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 888763
No 159
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.51 E-value=0.2 Score=53.88 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=33.4
Q ss_pred CCCCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHH
Q 038133 249 PMRNWAEGKLTPELLRAVERVG---YKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g---~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ 305 (671)
|--+|++.+--.++.+.|.+.= +..|--++. ..+ -.+.+|+.||+|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~----~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFAT----LGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHH----HTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHH----CCCCCCCceEeeCCCCCcHHHHH
Confidence 4467999887777777776541 111111111 111 3478999999999999754
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.37 E-value=0.29 Score=49.94 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
...+++.||+|+|||..+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3679999999999997543
No 161
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.17 E-value=2.2 Score=42.89 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l 310 (671)
.|.-++++|++|+|||..+...+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 355689999999999975544433
No 162
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.78 E-value=0.97 Score=48.66 Aligned_cols=113 Identities=18% Similarity=0.074 Sum_probs=55.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEE-ECCCc
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSI-VGGQS 366 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~-~gg~~ 366 (671)
|.-++++|++|+|||..++-.+...... .|..++|+..- .-..|+...+... ..++....+ .|..+
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~----------~g~~vl~~slE-~~~~~l~~R~~~~--~~~i~~~~l~~g~l~ 266 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK----------EGVGVGIYSLE-MPAAQLTLRMMCS--EARIDMNRVRLGQLT 266 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT----------TCCCEEEEESS-SCHHHHHHHHHHH--HTTCCTTTCCGGGCC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCeEEEEECC-CCHHHHHHHHHHH--HcCCCHHHHhCCCCC
Confidence 3458899999999997655555544431 35567776653 2233443333221 122221111 12222
Q ss_pred hHHHH------HHHhcCCeEEEE-----cchHHHHHHhhcccccCCccEEEEcccchhhc
Q 038133 367 IEEQG------FRIRQGCEVVIA-----TPGRLIDCLERRYAVLNQCNYVVLDEADRMID 415 (671)
Q Consensus 367 ~~~~~------~~l~~~~~IiI~-----Tp~~L~~~l~~~~~~l~~~~~vViDEah~~~~ 415 (671)
..+.. ..+ ....+.|- |...+...+.+-.. -..+++||||..+.|..
T Consensus 267 ~~~~~~~~~a~~~l-~~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 267 DRDFSRLVDVASRL-SEAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHHHH-HTSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 22211 111 13455553 33334333322111 23689999999998864
No 163
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.71 E-value=1.7 Score=39.50 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=52.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++.-+..+...+.. .++.+..++|+.+..+....+ .. .+.|+|+|. .+.. .+++..
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gld~~~ 103 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAAR-GIDIEN 103 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTT-TCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCchhc
Confidence 456899999999999877766654 588999999998766544333 22 478999992 2333 344777
Q ss_pred ccEEEEcc
Q 038133 402 CNYVVLDE 409 (671)
Q Consensus 402 ~~~vViDE 409 (671)
+++||.-.
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88888644
No 164
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.63 E-value=0.17 Score=54.01 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=33.0
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHh-CCCcEEEEcCCCChHHHHH
Q 038133 248 RPMRNWAEGKLTPELLRAVERV---GYKNPSPIQMAAIPLGL-QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 248 ~pi~~f~e~~l~~~i~~~i~~~---g~~~p~~~Q~~ai~~il-~~rd~ii~a~TGsGKT~~~ 305 (671)
.|--+|++.+=-.++.+.|.+. .+..|--++. ... -.+.+|+.||+|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~----~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEE----MGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHH----HTCCCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHh----CCCCCCCCCceECCCCchHHHHH
Confidence 3556898877666666666542 1222322222 111 2468999999999999764
No 165
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.47 E-value=1.4 Score=45.10 Aligned_cols=55 Identities=20% Similarity=0.071 Sum_probs=30.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhh-HHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL-AQQIEEET 347 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~L-a~Qi~~~~ 347 (671)
|.-+++.|++|+|||..++..+....... ...+.+..++|+.-...+ ..++...+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~-----~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPP-----EKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCG-----GGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhccc-----ccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 45689999999999976555443322100 001125677887655433 44444333
No 166
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=89.08 E-value=1.4 Score=48.01 Aligned_cols=76 Identities=9% Similarity=0.117 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccCCCC
Q 038133 502 FSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP 581 (671)
Q Consensus 502 ~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~~~GiDIp 581 (671)
+..|...++. .+.++||.|.+...++.+.+.|...++.+...... ..+..| .|.|+..-+..|+-+|
T Consensus 371 ~~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~g--~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASDR--GRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCTT--CEEEEESCCCSCEEET
T ss_pred HHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCCC--cEEEEEcccccCcccC
Confidence 4555555543 25789999999999999999999988766544321 112333 4666667789999999
Q ss_pred CCcEEEEcC
Q 038133 582 DVAHVINYD 590 (671)
Q Consensus 582 ~v~~VI~~d 590 (671)
+..++|...
T Consensus 438 ~~klaVITE 446 (483)
T 3hjh_A 438 VRNLALICE 446 (483)
T ss_dssp TTTEEEEEH
T ss_pred CCCEEEEEc
Confidence 988888654
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.63 E-value=1.8 Score=44.83 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.+++.||.|+|||..+-.
T Consensus 40 ~~ll~G~~G~GKT~la~~ 57 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARL 57 (373)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999976533
No 168
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.53 E-value=1.2 Score=42.35 Aligned_cols=22 Identities=18% Similarity=-0.087 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~ 309 (671)
|.-+++.|++|+|||..+...+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999997655444
No 169
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.53 E-value=2.2 Score=38.77 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=52.4
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++.-+..+...+.. .++.+..++|+.+..+....+ .. .+.|+|+|. .+.. .+.+..
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-G~d~~~ 98 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLAR-GIDVQQ 98 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTT-TCCCCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhc-CCCccc
Confidence 457899999999999877766654 578899999998866544332 22 478999992 2232 344777
Q ss_pred ccEEEEcc
Q 038133 402 CNYVVLDE 409 (671)
Q Consensus 402 ~~~vViDE 409 (671)
+++||.-.
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887643
No 170
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.51 E-value=1.3 Score=53.65 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=65.2
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-cccccCCCCCCcEEE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-VAGRGIDIPDVAHVI 587 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-~~~~GiDIp~v~~VI 587 (671)
.+.+++|.|++..-+...++.+.+. ++.+..++|..+..++..++..+.+|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4678999999999888888877653 67899999999999999999999999999999994 566678888888887
Q ss_pred E
Q 038133 588 N 588 (671)
Q Consensus 588 ~ 588 (671)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 171
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.44 E-value=0.64 Score=56.09 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCCcEEEEecChhhHHHHHHHHHH---cCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-ccc---cCCCCCCcE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDK---LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-AGR---GIDIPDVAH 585 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~---~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~~~---GiDIp~v~~ 585 (671)
.+..+||.++++.-|..+++.|.. .++.+..+||+++..++...+..+..|..+|||+|.- +.. -+++.++.+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 467899999999999999999998 4678999999999988888899999999999999952 211 155678888
Q ss_pred EEEcC
Q 038133 586 VINYD 590 (671)
Q Consensus 586 VI~~d 590 (671)
||.-.
T Consensus 200 lViDE 204 (1104)
T 4ddu_A 200 VFVDD 204 (1104)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 88543
No 172
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.37 E-value=0.84 Score=47.49 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTR 337 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr 337 (671)
|+-+++.|++|+|||..++..+..... .+..++|+.--.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~-----------~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA-----------AGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH-----------TTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-----------CCCeEEEEECCC
Confidence 456899999999999766555544432 356677776543
No 173
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.27 E-value=2.5 Score=42.99 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~ 309 (671)
+-++++|++|+|||......+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 357899999999997654433
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.97 E-value=0.83 Score=47.28 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
|.-+++.|++|+|||..++-.+..... .+..++|+..- .-+.|+...+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~-----------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN-----------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH-----------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEeCC-CCHHHHHHHH
Confidence 334888999999999766555544442 46677777653 2344444433
No 175
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.95 E-value=1.8 Score=41.71 Aligned_cols=24 Identities=17% Similarity=-0.022 Sum_probs=18.1
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l 310 (671)
.|.-++++||+|+|||..+...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345689999999999976555443
No 176
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.86 E-value=1.5 Score=42.47 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=17.4
Q ss_pred CCCcEEEEcCCCChHHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~ 309 (671)
.|.-+.++||+|+|||..+...+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45678999999999997554433
No 177
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.83 E-value=1.3 Score=45.19 Aligned_cols=50 Identities=12% Similarity=-0.032 Sum_probs=31.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k 349 (671)
|.-++++|++|+|||..++-.+...+. .+..++|+..- .-..|+...+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~-----------~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD-----------NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT-----------TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEECC-CCHHHHHHHHHH
Confidence 445899999999999765555544442 34667777643 334444444443
No 178
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.75 E-value=0.5 Score=45.94 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=29.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETV 348 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~ 348 (671)
|.-++++|++|+|||..++-.+...+.. .+..++|+.-. .-..++...+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~----------~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE----------YGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH----------HCCCEEEEESS-SCHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh----------cCCCceeeccc-CCHHHHHHHHH
Confidence 4458999999999997655545443332 34556666533 33444444443
No 179
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.37 E-value=3.4 Score=44.03 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=43.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEe--cchhhHHHHHHHHHHHHhhcCcEEEEEECCC
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA--PTRELAQQIEEETVKFAHYLGIKVVSIVGGQ 365 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~--Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~ 365 (671)
++-++++|++|+|||......+..+. ..+.+++++. +.+..+.. .+..+....++.+.....+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~-----------~~g~~Vllvd~D~~r~aa~~---qL~~~~~~~gv~v~~~~~~~ 163 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK-----------GKGRRPLLVAADTQRPAARE---QLRLLGEKVGVPVLEVMDGE 163 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH-----------TTTCCEEEEECCSSCHHHHH---HHHHHHHHHTCCEEECCTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-----------HcCCeEEEeeccccCchhHH---HHHHhcccCCccEEecCCCC
Confidence 34577889999999976554443322 1355555544 33333322 12233444566654432222
Q ss_pred chHH----HHHHH-hcCCe-EEEEcchHH
Q 038133 366 SIEE----QGFRI-RQGCE-VVIATPGRL 388 (671)
Q Consensus 366 ~~~~----~~~~l-~~~~~-IiI~Tp~~L 388 (671)
+..+ ....+ ..+++ |||=||+++
T Consensus 164 ~p~~i~~~~l~~~~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 164 SPESIRRRVEEKARLEARDLILVDTAGRL 192 (425)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEcCCCcc
Confidence 2211 11222 24565 677787765
No 180
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.34 E-value=2.5 Score=42.05 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=19.2
Q ss_pred hCCCcEEEEcCCCChHHHHHHHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~~ll~~l 310 (671)
..|.-++++||+|+|||..++..+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3566799999999999976555443
No 181
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.23 E-value=0.9 Score=47.43 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
+..++++||||||||.. +..++..+
T Consensus 123 ~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 44689999999999954 33344444
No 182
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.04 E-value=7.2 Score=39.26 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~ 309 (671)
++-+.+++++|+|||..+...+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4457788999999997654433
No 183
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.02 E-value=3.2 Score=40.56 Aligned_cols=71 Identities=18% Similarity=0.355 Sum_probs=53.7
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-----cc--ccCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----AG--RGIDIPD 582 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-----~~--~GiDIp~ 582 (671)
+..+||.++++.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+|.- +. .++++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 567999999999998888877665 78899999998876544433 246899999942 21 4567888
Q ss_pred CcEEEE
Q 038133 583 VAHVIN 588 (671)
Q Consensus 583 v~~VI~ 588 (671)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888874
No 184
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.87 E-value=2 Score=40.82 Aligned_cols=73 Identities=18% Similarity=0.327 Sum_probs=55.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c-----cccCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL-----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A-----GRGIDIPD 582 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~-----~~GiDIp~ 582 (671)
..++||.|+++.-+..+++.+... +..+..++|+.+...... .+..+..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999998888775 688999999988765443 345577899999952 1 23467778
Q ss_pred CcEEEEc
Q 038133 583 VAHVINY 589 (671)
Q Consensus 583 v~~VI~~ 589 (671)
+++||.-
T Consensus 159 ~~~lViD 165 (220)
T 1t6n_A 159 IKHFILD 165 (220)
T ss_dssp CCEEEEE
T ss_pred CCEEEEc
Confidence 8888843
No 185
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.75 E-value=1.1 Score=46.82 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La 340 (671)
|.-+++.||+|+|||..++..+ ..+.. .+..++|+..-..+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la-~~~~~----------~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAI-AEAQK----------MGGVAAFIDAEHALD 102 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH-HHHHH----------TTCCEEEEESSCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HHHHh----------cCCeEEEEecccccc
Confidence 4468899999999996544433 33321 456788887654443
No 186
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.73 E-value=1.2 Score=46.55 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhh
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~L 339 (671)
++-+++.|++|+|||..++..+..... .+..++|+..--.+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~-----------~g~~vlyid~E~s~ 103 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR-----------EGKTCAFIDAEHAL 103 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH-----------TTCCEEEEESSCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----------CCCeEEEEeCCCCc
Confidence 456899999999999776655544432 35667877764433
No 187
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.70 E-value=2.4 Score=43.14 Aligned_cols=19 Identities=11% Similarity=-0.169 Sum_probs=15.4
Q ss_pred cEEEEcCCCChHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~ 308 (671)
..++.||.|+|||.++...
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 20 SILINGEDLSYPREVSLEL 38 (305)
T ss_dssp EEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999765443
No 188
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.66 E-value=2.7 Score=40.00 Aligned_cols=72 Identities=26% Similarity=0.308 Sum_probs=52.3
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++.-+..+...+.. .++.+..++|+.+..++...+ .. ...|+|+| +.+.+ .+.+..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidi~~ 99 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAAR-GLDIPQ 99 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHH----HTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTC-SSSCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhhc-CCCCcc
Confidence 467899999999999877666654 488999999998876654433 23 47899999 33333 345778
Q ss_pred ccEEEE
Q 038133 402 CNYVVL 407 (671)
Q Consensus 402 ~~~vVi 407 (671)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888874
No 189
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.54 E-value=1.4 Score=44.73 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFV 306 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~l 306 (671)
.+++.||+|+|||..+-
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999997643
No 190
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.50 E-value=1.7 Score=45.59 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=14.1
Q ss_pred CcEEE--EcCCCChHHHHHH
Q 038133 289 RDVIG--IAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii--~a~TGsGKT~~~l 306 (671)
..+++ .|+.|+|||..+-
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 35777 8999999997543
No 191
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=86.35 E-value=0.98 Score=49.31 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
.+.+++.||+|+|||+++
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999764
No 192
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.28 E-value=8.3 Score=39.49 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
+.-+.++||+|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455889999999999654
No 193
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.26 E-value=0.56 Score=41.88 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=17.0
Q ss_pred hCCCcEEEEcCCCChHHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~~ 305 (671)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35678999999999999764
No 194
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.15 E-value=0.53 Score=41.96 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=17.2
Q ss_pred HhCCCcEEEEcCCCChHHHHH
Q 038133 285 GLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 285 il~~rd~ii~a~TGsGKT~~~ 305 (671)
...+.++++.||+|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999753
No 195
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=85.99 E-value=1.9 Score=39.53 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=52.2
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++.-+..++..+.. .++.+..++|+.+..+....+ .. .+.|+|+|.- +. ..+++..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~-~Gldi~~ 99 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG-RGMDIER 99 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS-TTCCGGG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh----cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh-cCcchhh
Confidence 456899999999999877766654 588999999998766544333 22 4889999932 22 2344677
Q ss_pred ccEEEEcc
Q 038133 402 CNYVVLDE 409 (671)
Q Consensus 402 ~~~vViDE 409 (671)
+++||.-.
T Consensus 100 ~~~Vi~~d 107 (172)
T 1t5i_A 100 VNIAFNYD 107 (172)
T ss_dssp CSEEEESS
T ss_pred CCEEEEEC
Confidence 88887643
No 196
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.97 E-value=1.3 Score=56.16 Aligned_cols=43 Identities=21% Similarity=0.144 Sum_probs=32.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
++.++++||+|+|||..++..+..... .|..++|+...-.+..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~-----------~G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR-----------EGKTCAFIDAEHALDP 1469 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT-----------TTCCEEEECTTSCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----------cCCcEEEEEcccccCH
Confidence 678999999999999877666655442 5788888887655444
No 197
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=85.89 E-value=4.5 Score=43.24 Aligned_cols=85 Identities=19% Similarity=0.133 Sum_probs=45.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccC-CCeEEEEe--cchhhHHHHHHHHHHHHhhcCcEEEEEECCCc
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE-GPYAVVMA--PTRELAQQIEEETVKFAHYLGIKVVSIVGGQS 366 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~-g~~vLil~--Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~ 366 (671)
.++++|++|+|||.+..-.+..+.. . |.+++++. |.+..+... +..+....++.+.....+.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~-----------~~G~kVllvd~D~~r~~a~~q---l~~~~~~~~l~v~~~~~~~d 167 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLRE-----------KHKKKVLVVSADVYRPAAIKQ---LETLAEQVGVDFFPSDVGQK 167 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-----------TSCCCEEEEECCCSSTTHHHH---HHHHHHHHTCEECCCCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-----------hcCCeEEEEecCCCCccHHHH---HHhhcccCCeeEEeCCCCCC
Confidence 5778899999999776554443332 3 66666655 444444322 22334445666544322222
Q ss_pred hHHH----HHHHh-cCCe-EEEEcchHH
Q 038133 367 IEEQ----GFRIR-QGCE-VVIATPGRL 388 (671)
Q Consensus 367 ~~~~----~~~l~-~~~~-IiI~Tp~~L 388 (671)
.... ...+. .+++ |||=||+++
T Consensus 168 p~~i~~~~l~~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 168 PVDIVNAALKEAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 2221 12223 3555 567788764
No 198
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.78 E-value=0.75 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
+.-++++||||||||.. +..++..+
T Consensus 167 ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 34588999999999964 34444444
No 199
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=85.74 E-value=2.2 Score=39.12 Aligned_cols=72 Identities=25% Similarity=0.253 Sum_probs=52.0
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++..+..++..+.. .++.+..++|+.+..+....+ .. .+.|+|+|. .+. ..+.+..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA-RGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC-TTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh-cCCCccc
Confidence 467899999999999877666554 578999999998866554333 23 488999993 222 2345778
Q ss_pred ccEEEE
Q 038133 402 CNYVVL 407 (671)
Q Consensus 402 ~~~vVi 407 (671)
+++||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 200
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.65 E-value=1.1 Score=46.85 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhh
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~L 339 (671)
|.-+++.|++|+|||..++-.+..... .+..++|+..-..+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~-----------~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK-----------AGGTCAFIDAEHAL 114 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH-----------TTCCEEEEESSCCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH-----------CCCeEEEEECCCCh
Confidence 456889999999999765554444332 35567777655433
No 201
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.42 E-value=27 Score=35.14 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
..+++.||.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 47999999999999653
No 202
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.28 E-value=1.2 Score=45.17 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=17.9
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l 310 (671)
.++.++++|++|+|||......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355688999999999976554443
No 203
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.85 E-value=0.86 Score=48.81 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~ 341 (671)
..+++++|+||||||..+ .+++..+.. .|..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~----------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL----------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH----------TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH----------CCCcEEEEeCCCchhH
Confidence 458999999999999864 444444432 4677888889888764
No 204
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.67 E-value=3.4 Score=39.99 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=54.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-----ccc-ccCCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAG-RGIDIPDV 583 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-----~~~-~GiDIp~v 583 (671)
++.+||.|+++.-+..+++.+... ++.+..++|+.+.......+. ...+|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCcccc
Confidence 567999999999988887777654 889999999998776555443 2478999994 222 34577888
Q ss_pred cEEEEc
Q 038133 584 AHVINY 589 (671)
Q Consensus 584 ~~VI~~ 589 (671)
.+||.-
T Consensus 178 ~~lViD 183 (242)
T 3fe2_A 178 TYLVLD 183 (242)
T ss_dssp CEEEET
T ss_pred cEEEEe
Confidence 888743
No 205
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=84.62 E-value=1.6 Score=40.76 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=43.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHH---Hh-cCCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFR---IR-QGCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++.-+..+...+.. .|+.+..++|+.+..+.... +. ..+.|+|+|. . +.. .+.+..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~~-Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-V----AAR-GLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-h----hhc-CCCccc
Confidence 467899999999999877666554 57899999998765543322 22 2578999993 2 222 234777
Q ss_pred ccEEEE
Q 038133 402 CNYVVL 407 (671)
Q Consensus 402 ~~~vVi 407 (671)
+++||.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 888876
No 206
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.03 E-value=1 Score=52.17 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=37.0
Q ss_pred ccCCCCCCCCCcccCCCCHHHHHHHHHcC-C--CCCcHHHHHHHHHHhCCCcEEEEcCCCChHHHHH
Q 038133 242 KGSKIPRPMRNWAEGKLTPELLRAVERVG-Y--KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 242 ~g~~ip~pi~~f~e~~l~~~i~~~i~~~g-~--~~p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ 305 (671)
+...+..|-..|++.+...+..+.|.+.- + ..|.-++.. -+...+.+|+.||.|+|||+.+
T Consensus 465 r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHHH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHHH
Confidence 33444556678999888888888876541 1 111111100 0012357999999999999754
No 207
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.84 E-value=2.7 Score=42.88 Aligned_cols=24 Identities=25% Similarity=0.102 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~ 311 (671)
|.-+++.|++|+|||..++-.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999765554443
No 208
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=83.76 E-value=2.2 Score=43.66 Aligned_cols=90 Identities=10% Similarity=0.067 Sum_probs=52.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~ 369 (671)
-+++.||.|+|||...+-.+...... ..+..++|+..--.+... ++..+|+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~---------g~g~~vlyId~E~s~~~~-------ra~~lGvd~----------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ---------YPDAVCLFYDSEFGITPA-------YLRSMGVDP----------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH---------CTTCEEEEEESSCCCCHH-------HHHHTTCCG-----------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc---------CCCceEEEEeccchhhHH-------HHHHhCCCH-----------
Confidence 47899999999997766655544421 136788998876666432 133344321
Q ss_pred HHHHHhcCCeEEEEcchHHHHH-H---hhc-ccccCCccEEEEcccchhh
Q 038133 370 QGFRIRQGCEVVIATPGRLIDC-L---ERR-YAVLNQCNYVVLDEADRMI 414 (671)
Q Consensus 370 ~~~~l~~~~~IiI~Tp~~L~~~-l---~~~-~~~l~~~~~vViDEah~~~ 414 (671)
-++++..|..+-+. + ..- .+.-..+++||||-+..|.
T Consensus 83 --------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12445544443332 2 110 0123468999999999774
No 209
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.76 E-value=2 Score=47.34 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=61.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c-----cccCCCCCCcEEE
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A-----GRGIDIPDVAHVI 587 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~-----~~GiDIp~v~~VI 587 (671)
.+.+||.++++.-+....+.|...++.+..+||+.+..++..++..+..|..+||++|+- + ...++..++.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 578999999999999999999999999999999999999999999999999999999952 1 1223345566666
No 210
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.69 E-value=1.9 Score=48.16 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=54.5
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHh--hcCCCcEEEecc
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF--RTKRYNVLVATD 572 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F--~~g~~~VLVaT~ 572 (671)
.+.+||.++++.-+....+.|...|+.+..++|+++..++..++..+ ..+..+|||+|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 67899999999999999999999999999999999999998888888 578899999997
No 211
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=83.60 E-value=1.7 Score=44.35 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~ 309 (671)
+.++++.||+|+|||..+...+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5789999999999997654433
No 212
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=83.49 E-value=0.74 Score=45.82 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=15.9
Q ss_pred hCCCcEEEEcCCCChHHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~~ 305 (671)
..|.-++++||||||||..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 34556899999999999643
No 213
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.28 E-value=2.9 Score=43.17 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchh
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE 338 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~ 338 (671)
|.-+++.|++|+|||..++..+..... +. ...+.+..++|+.-...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~--~~---~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQL--PG---AGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTS--CB---TTTBCCCEEEEEESSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc--cc---ccCCCCCeEEEEECCCC
Confidence 445899999999999765544433221 10 01123567888776543
No 214
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.03 E-value=1.7 Score=41.91 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=30.5
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
.|.-++++|++|+|||..++..+...+. .+..++++.-. .-..++...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----------~~~~v~~~~~e-~~~~~~~~~~ 70 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK-----------MGEPGIYVALE-EHPVQVRQNM 70 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH-----------TTCCEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-----------cCCeEEEEEcc-CCHHHHHHHH
Confidence 4556899999999999765554444432 35567776643 3344444443
No 215
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=82.95 E-value=7.8 Score=42.59 Aligned_cols=77 Identities=10% Similarity=0.087 Sum_probs=56.3
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---h-cCCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---R-QGCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~-~~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+|+.-|..++..+..... .++.+..++|+.+..+....+ . ..+.|+|||. .+.. .+++..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~-GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR-GMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS-SCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc-CCCccc
Confidence 577899999999999988888776543 368899999998866544332 2 3589999994 3333 445778
Q ss_pred ccEEEEcc
Q 038133 402 CNYVVLDE 409 (671)
Q Consensus 402 ~~~vViDE 409 (671)
+++||.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88887554
No 216
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=82.71 E-value=2.7 Score=40.42 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=52.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c-----cccCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL-----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A-----GRGIDIPD 582 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~-----~~GiDIp~ 582 (671)
+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ...+|+|+|.- + ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 568999999999999999988775 67889999999876654433 35789999952 1 23456777
Q ss_pred CcEEEE
Q 038133 583 VAHVIN 588 (671)
Q Consensus 583 v~~VI~ 588 (671)
+.+||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 877774
No 217
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.59 E-value=1.5 Score=46.27 Aligned_cols=58 Identities=21% Similarity=0.356 Sum_probs=36.7
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEEC
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVG 363 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~g 363 (671)
.+.+++++|+||+|||...-..+.... ..+.+++|+=|..+.. .++..+|-.+..+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~--------~~~~~~gg~~~~~~~ 91 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----------MQGSRVIIIDPEREYK--------EMCRKLGGVWINCTG 91 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----------TTTCCEEEEESSCCSH--------HHHHHTTCEEEETTS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----------HCCCEEEEEeCCcCHH--------HHHHHcCCEEEEECC
Confidence 456899999999999965444333332 2577888888887643 334445555544443
No 218
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=82.35 E-value=5.3 Score=42.18 Aligned_cols=45 Identities=11% Similarity=-0.025 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTR 337 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr 337 (671)
|.-+.++||.|+|||..+...++..+. |+ .....+..++++.-..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~--p~---~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQI--PL---DIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTS--CG---GGTCCSSEEEEEESSS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhcc--Cc---ccCCCCCcEEEEeCCC
Confidence 456899999999999765433333221 10 0111345677776543
No 219
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=81.42 E-value=3.4 Score=39.74 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=50.6
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-----ccc--cCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----AGR--GIDIP 581 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-----~~~--GiDIp 581 (671)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ +..+|+|+|.- +.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3668999999999999999888776 47889999987755433322 46899999942 122 36677
Q ss_pred CCcEEEE
Q 038133 582 DVAHVIN 588 (671)
Q Consensus 582 ~v~~VI~ 588 (671)
++.+||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7887774
No 220
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=80.80 E-value=12 Score=36.22 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=51.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c-----cccCCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A-----GRGIDIPDV 583 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~-----~~GiDIp~v 583 (671)
+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|.- + ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999988887765 56788899988765433322 246799999952 1 124577788
Q ss_pred cEEEE
Q 038133 584 AHVIN 588 (671)
Q Consensus 584 ~~VI~ 588 (671)
.+||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 221
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.77 E-value=5.1 Score=37.34 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=52.7
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc--CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-----ccc-ccCCCCCCcE
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL--GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAG-RGIDIPDVAH 585 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-----~~~-~GiDIp~v~~ 585 (671)
+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+. ...+|+|+|. .+. ..+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 567999999999999999999877 467888999887654433332 2578999995 222 3466778888
Q ss_pred EEE
Q 038133 586 VIN 588 (671)
Q Consensus 586 VI~ 588 (671)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 222
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=80.48 E-value=11 Score=41.77 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=57.0
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---h-cCCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---R-QGCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~-~~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+|+.-|..++..+..... .++.+..++|+.+..+....+ . ....|+|||. .+.. .+++..
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~-GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR-GMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS-SCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc-CCCccc
Confidence 567899999999999988888776543 378899999998866544332 2 3589999993 3333 445778
Q ss_pred ccEEEEccc
Q 038133 402 CNYVVLDEA 410 (671)
Q Consensus 402 ~~~vViDEa 410 (671)
+++||.-..
T Consensus 360 v~~VI~~~~ 368 (579)
T 3sqw_A 360 VHEVLQIGV 368 (579)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEcCC
Confidence 888886554
No 223
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.46 E-value=4.9 Score=37.51 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=51.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-----cccc-cCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL-----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGR-GIDIPD 582 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-----~~~~-GiDIp~ 582 (671)
+.++||.|+++.-+..+++.+... +..+..++|+.+....... + .+..+|+|+|. .+.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999888888664 5788899999886543322 2 35679999995 2222 346677
Q ss_pred CcEEEE
Q 038133 583 VAHVIN 588 (671)
Q Consensus 583 v~~VI~ 588 (671)
+.+||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 224
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.42 E-value=3 Score=40.29 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=46.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-----cccc-cCCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGR-GIDIPDV 583 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-----~~~~-GiDIp~v 583 (671)
+.++||.++++.-+..+++.+... +..+..++|+.+... ....+..+..+|+|+|. .+.. .+++.++
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 568999999999999999888765 567888888765432 23455567789999993 3333 3667778
Q ss_pred cEEEE
Q 038133 584 AHVIN 588 (671)
Q Consensus 584 ~~VI~ 588 (671)
.+||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88774
No 225
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.27 E-value=4 Score=38.98 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=49.3
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc---CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc------ccccCCCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL---GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV------AGRGIDIPDV 583 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~---~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~------~~~GiDIp~v 583 (671)
.+..+||.++++.-+..+++.+... +..+..++|+.+...+...+ . ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4677999999999999999988875 67888999987765443332 2 34899999941 1235677888
Q ss_pred cEEEE
Q 038133 584 AHVIN 588 (671)
Q Consensus 584 ~~VI~ 588 (671)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88874
No 226
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.03 E-value=7 Score=39.50 Aligned_cols=72 Identities=26% Similarity=0.288 Sum_probs=51.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+|+.-+..+...+. ..++.+..++|+.+..++...+ .. ...|+|+| +.+.+ .+.+..
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~----~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~ 96 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLL----RLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQ 96 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHH----TTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHH----hCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-Cccccc
Confidence 46789999999998886665554 3588999999998866654433 22 48899999 33333 445778
Q ss_pred ccEEEE
Q 038133 402 CNYVVL 407 (671)
Q Consensus 402 ~~~vVi 407 (671)
+++||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888875
No 227
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=79.18 E-value=6.1 Score=41.84 Aligned_cols=76 Identities=32% Similarity=0.332 Sum_probs=50.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEEC--------CCchHHHHHH---Hhc-CCeEEEEcchHHHHHHh
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVG--------GQSIEEQGFR---IRQ-GCEVVIATPGRLIDCLE 393 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~g--------g~~~~~~~~~---l~~-~~~IiI~Tp~~L~~~l~ 393 (671)
.+.++||.|+++.-+..++..+.. .++.+..++| +.+..+.... +.. .+.|+|+|. . +.
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-~----~~ 430 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVK----DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-V----GE 430 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHH----TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-G----GG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHH----cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-c----cc
Confidence 578899999999999877666655 4888999999 5554443322 222 478999992 2 22
Q ss_pred hcccccCCccEEEEcccc
Q 038133 394 RRYAVLNQCNYVVLDEAD 411 (671)
Q Consensus 394 ~~~~~l~~~~~vViDEah 411 (671)
..+++..+++||+-+..
T Consensus 431 -~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 431 -EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp -GGGGSTTCCEEEESSCC
T ss_pred -cCCCchhCCEEEEeCCC
Confidence 23458889998865543
No 228
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.03 E-value=6.2 Score=41.24 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=53.0
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++.-+..++..+.+ .++.+..++|+.+..+....+ .. .+.|+|+| +.+.. .+++..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCccc
Confidence 577899999999999877766654 578999999998866544333 22 57899999 34444 344778
Q ss_pred ccEEEE
Q 038133 402 CNYVVL 407 (671)
Q Consensus 402 ~~~vVi 407 (671)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 229
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=78.81 E-value=6.7 Score=40.53 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=55.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c-----cccCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL-----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A-----GRGIDIPD 582 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~-----~~GiDIp~ 582 (671)
+.++||.|+++.-+..+++.+... ++.+..++|+.+...... .+..+..+|+|+|.- + ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 558999999999999998888775 788999999998765543 345577899999942 2 23456778
Q ss_pred CcEEEE
Q 038133 583 VAHVIN 588 (671)
Q Consensus 583 v~~VI~ 588 (671)
+.+||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888884
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.81 E-value=1.3 Score=51.26 Aligned_cols=18 Identities=33% Similarity=0.296 Sum_probs=15.1
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.++++||||+|||..+-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA 540 (758)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 499999999999976543
No 231
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=78.46 E-value=8.3 Score=40.09 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=52.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++.-|..++..+.. .++.+..++|+.+..+....+ .. .+.|+|+|. .+. ..+++..
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~ 334 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSK----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQ 334 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT-SSCCCTT
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc-cCCCccC
Confidence 467899999999999987776665 478899999998866654333 23 478999993 333 3445778
Q ss_pred ccEEEE
Q 038133 402 CNYVVL 407 (671)
Q Consensus 402 ~~~vVi 407 (671)
+++||.
T Consensus 335 ~~~Vi~ 340 (412)
T 3fht_A 335 VSVVIN 340 (412)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888884
No 232
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=78.16 E-value=14 Score=40.23 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=23.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
.++++|++|+|||..+...+..+. . .|.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~-~----------~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ-R----------KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-H----------TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-h----------CCCeEEEEec
Confidence 588889999999976555443332 2 4666666664
No 233
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.27 E-value=0.93 Score=45.96 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=32.1
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH-hCCCcEEEEcCCCChHHHHHH
Q 038133 248 RPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLG-LQQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 248 ~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~i-l~~rd~ii~a~TGsGKT~~~l 306 (671)
.|-.+|++.+-...+.+.|...-- .|..+........ ..++.+++.||+|+|||..+-
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 345678887666666666654300 0000001111111 245679999999999997643
No 234
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.06 E-value=12 Score=36.74 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=52.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-----ccc--ccCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAG--RGIDIPD 582 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-----~~~--~GiDIp~ 582 (671)
+..+||.++++.-+..+++.+... +..+..++|+......... +..+ .+|+|+|. .+. .++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 667999999999999998888775 5678889998876554333 3334 89999994 222 2577888
Q ss_pred CcEEEE
Q 038133 583 VAHVIN 588 (671)
Q Consensus 583 v~~VI~ 588 (671)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888874
No 235
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.17 E-value=2.4 Score=46.42 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=24.2
Q ss_pred HHHcCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCChHHHH
Q 038133 266 VERVGYKNPSPIQMAAIPL-GLQQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 266 i~~~g~~~p~~~Q~~ai~~-il~~rd~ii~a~TGsGKT~~ 304 (671)
+...|. +++.+...+.. +..|..++++||||||||..
T Consensus 239 l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 239 LIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 334443 34444444443 34677899999999999964
No 236
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=75.76 E-value=1.4 Score=45.45 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=16.5
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~ 309 (671)
+-++++||||||||..++..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999998765443
No 237
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.48 E-value=5.3 Score=46.14 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
+.+|+.||.|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999764
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=75.19 E-value=1.7 Score=40.17 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|+-++++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999753
No 239
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=74.89 E-value=5.4 Score=39.59 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCCCcHHHH-HHHHHHhCCC-----cEEEEcCCCChHHHHHHH
Q 038133 261 ELLRAVERVGYKNPSPIQM-AAIPLGLQQR-----DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 261 ~i~~~i~~~g~~~p~~~Q~-~ai~~il~~r-----d~ii~a~TGsGKT~~~ll 307 (671)
.+.+.|+-.||+ |++- .++-.++.++ .+++.||.|+|||+.+..
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~a 123 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEA 123 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 577778777875 4442 2345555543 499999999999976653
No 240
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=74.46 E-value=7.4 Score=39.64 Aligned_cols=74 Identities=23% Similarity=0.279 Sum_probs=52.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++.-+..+++.+.. .++.+..++|+.+..+....+ .. ...|+|+|. .+.. .+++..
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRD----IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh----cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCccc
Confidence 567899999999999877766655 578899999998766544332 22 478999993 2222 334777
Q ss_pred ccEEEEcc
Q 038133 402 CNYVVLDE 409 (671)
Q Consensus 402 ~~~vViDE 409 (671)
+++||.-.
T Consensus 307 ~~~Vi~~~ 314 (367)
T 1hv8_A 307 LNCVINYH 314 (367)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 88888643
No 241
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=74.29 E-value=3.8 Score=53.62 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHH----HHHHHHhCCCcEEEEcCCCChHHHHHHH
Q 038133 258 LTPELLRAVERVGYKNPSPIQM----AAIPLGLQQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 258 l~~~i~~~i~~~g~~~p~~~Q~----~ai~~il~~rd~ii~a~TGsGKT~~~ll 307 (671)
+...+.+++.+.|+. +.+.+. |....+..+..++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 445667777888884 566553 2334445677899999999999987543
No 242
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.19 E-value=2.8 Score=39.93 Aligned_cols=32 Identities=25% Similarity=0.123 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCChHHHHH
Q 038133 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 274 p~~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~ 305 (671)
-+.-|..++..+..|.-+.++||.|||||..+
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34456777888888888999999999999653
No 243
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=74.15 E-value=6.4 Score=39.27 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCChHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~l 306 (671)
....+++.||+|+|||..+-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999997643
No 244
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=74.15 E-value=2.1 Score=42.19 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.+..+++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999754
No 245
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.88 E-value=4.1 Score=38.70 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=45.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccc------cccCCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA------GRGIDIPDV 583 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~------~~GiDIp~v 583 (671)
+.++||.|+++.-+..+++.+... +..+..++|+.+....... +. ..+|+|+|.-. ...+++.++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 568999999999999888888764 6788999998775443322 22 38899999521 235667778
Q ss_pred cEEEE
Q 038133 584 AHVIN 588 (671)
Q Consensus 584 ~~VI~ 588 (671)
.+||.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88874
No 246
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=73.73 E-value=1.7 Score=44.30 Aligned_cols=20 Identities=30% Similarity=0.204 Sum_probs=15.5
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
-++++||||||||..+...+
T Consensus 5 ~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 47889999999997654433
No 247
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=73.72 E-value=1.7 Score=44.20 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=15.5
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
-++++||||||||..+...+
T Consensus 12 ~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 37889999999997654443
No 248
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=72.97 E-value=2.1 Score=39.49 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
++.++++|++|||||.++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45789999999999986544
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=72.93 E-value=2.1 Score=40.16 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=17.0
Q ss_pred CCCcEEEEcCCCChHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll 307 (671)
.++.++++|++|||||.++-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456799999999999976543
No 250
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.54 E-value=1.7 Score=41.23 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
++-++++||||+|||..++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45689999999999976433
No 251
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=72.52 E-value=5.9 Score=38.62 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999754
No 252
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.45 E-value=7.8 Score=39.05 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~ 309 (671)
.-++++|++|+|||..+...+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357788999999997655444
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=71.92 E-value=2.3 Score=40.33 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|+-++++||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3556889999999999754
No 254
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=71.72 E-value=1.9 Score=39.47 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
+.-++++|++|||||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346899999999999764
No 255
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=71.57 E-value=1.7 Score=39.14 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFV 306 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~l 306 (671)
-++++|++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997543
No 256
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=71.55 E-value=2.8 Score=43.37 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
++.+++.||+|+|||..+-.
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35799999999999976443
No 257
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=71.51 E-value=22 Score=40.05 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=57.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHH---Hhc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFR---IRQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+|+.-|..+...+.. .|+.+..++|+.+..+.... +.. .+.|+|||. .+. ..+.+..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~-~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKE----IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR-EGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS-TTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHh----cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh-CCcccCC
Confidence 577999999999999876665554 58889889988775554433 233 488999994 333 3445788
Q ss_pred ccEEEEcccchh
Q 038133 402 CNYVVLDEADRM 413 (671)
Q Consensus 402 ~~~vViDEah~~ 413 (671)
+++||+-+++.+
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999998765
No 258
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=71.51 E-value=6.7 Score=40.57 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=16.9
Q ss_pred CCCcEEEEcCCCChHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll 307 (671)
....+++.||+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346899999999999976433
No 259
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=71.06 E-value=2.7 Score=42.91 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=17.9
Q ss_pred HHhCCCcEEEEcCCCChHHHHH
Q 038133 284 LGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 284 ~il~~rd~ii~a~TGsGKT~~~ 305 (671)
.+..+.++++.||+|+|||..+
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 3445789999999999999754
No 260
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=73.72 E-value=0.85 Score=41.86 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=47.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++.-+..+...+.. .++.+..++|+.+..+....+ .. .+.|+|+|. .+.. .+++..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gid~~~ 98 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLRE----AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAAR-GIDIPD 98 (170)
Confidence 456899999999999877666654 477888899987655443322 22 478999992 2222 223666
Q ss_pred ccEEEE
Q 038133 402 CNYVVL 407 (671)
Q Consensus 402 ~~~vVi 407 (671)
+++||.
T Consensus 99 ~~~Vi~ 104 (170)
T 2yjt_D 99 VSHVFN 104 (170)
Confidence 777665
No 261
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=70.98 E-value=2.3 Score=46.50 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCcEEEEcCCCChHHHHH
Q 038133 279 MAAIPLGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 279 ~~ai~~il~~rd~ii~a~TGsGKT~~~ 305 (671)
..++-.+..+.++++.||+|+|||..+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 345555667889999999999999753
No 262
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=70.94 E-value=2.2 Score=41.98 Aligned_cols=18 Identities=28% Similarity=0.091 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
-++++||+|||||..+..
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 378999999999976543
No 263
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=70.68 E-value=7.7 Score=42.26 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=48.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-----cccc-C-CCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----AGRG-I-DIPD 582 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-----~~~G-i-DIp~ 582 (671)
++++||.|+++.-+..+++.+... ++.+..+||+.+...+...+. ...+|+|+|.- +..| + .+.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888888877765 899999999987654332221 23789999942 2222 3 6777
Q ss_pred CcEEEE
Q 038133 583 VAHVIN 588 (671)
Q Consensus 583 v~~VI~ 588 (671)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888874
No 264
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=70.59 E-value=6.7 Score=47.02 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=58.0
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CC----eEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-cccccCC-CCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL----GY----RVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-VAGRGID-IPD 582 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~----~~----~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-~~~~GiD-Ip~ 582 (671)
.+..+||.++++.-+..+++.+... ++ .+..+||+.+...+......+.+ .+|+|+|+ .+..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3678999999999999888888754 56 78999999999888878887877 89999995 2222222 557
Q ss_pred CcEEEEc
Q 038133 583 VAHVINY 589 (671)
Q Consensus 583 v~~VI~~ 589 (671)
+++||.-
T Consensus 176 l~~lViD 182 (1054)
T 1gku_B 176 FDFIFVD 182 (1054)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7888743
No 265
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=70.58 E-value=13 Score=39.38 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=50.7
Q ss_pred eEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCCccE
Q 038133 329 YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQCNY 404 (671)
Q Consensus 329 ~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~ 404 (671)
.+||.|+|+.-|..++..+.. .++.+..++|+.+..+....+ .. .+.|+|+|. .+. ..+++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~-rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSE----KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS-RGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHH----TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT-SSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh-CCCCcccCCE
Confidence 499999999999877666554 588999999998766544333 23 488999994 333 3455788888
Q ss_pred EEE
Q 038133 405 VVL 407 (671)
Q Consensus 405 vVi 407 (671)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 266
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.45 E-value=5 Score=50.09 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=57.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSI 367 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~ 367 (671)
|+-+.+.+|.|||||..++..+.... ..|..++++.+--+|.... +..+|+.+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~-----------~~g~~~~~i~~e~~~~~~~-------~~~~Gv~~--------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQ-----------REGKTCAFIDAEHALDPIY-------ARKLGVDI--------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH-----------HTTCCEEEECTTSCCCHHH-------HHHTTCCG---------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH-----------hcCCeEEEEecCCCCCHHH-------HHHcCCCH---------
Confidence 46799999999999987665554433 2688899999988887643 33445432
Q ss_pred HHHHHHHhcCCeEEEEcchHHHHHHhh--cccccCCccEEEEcccchhh
Q 038133 368 EEQGFRIRQGCEVVIATPGRLIDCLER--RYAVLNQCNYVVLDEADRMI 414 (671)
Q Consensus 368 ~~~~~~l~~~~~IiI~Tp~~L~~~l~~--~~~~l~~~~~vViDEah~~~ 414 (671)
-+++|.-|+.--+.|.- ..+.-..+++||||.+-.+.
T Consensus 1484 ----------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1484 ----------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp ----------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ----------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCC
Confidence 12556666443222211 11124568999999998764
No 267
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.41 E-value=2.7 Score=43.81 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=16.7
Q ss_pred hCCCcEEEEcCCCChHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~ 304 (671)
..|..++++||||||||..
T Consensus 173 ~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HTTCCEEEEESSSSCHHHH
T ss_pred hcCCEEEEECCCCCCHHHH
Confidence 4788999999999999964
No 268
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=70.26 E-value=1.8 Score=42.39 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=30.9
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCChHHHHH
Q 038133 248 RPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGL--QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 248 ~pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il--~~rd~ii~a~TGsGKT~~~ 305 (671)
.|-.+|+++.-.+.....+..+-.. . -...++..+- -.+.++++||+|+|||..+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3556788876666666655543110 0 0011222221 1245999999999999654
No 269
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=70.19 E-value=2.6 Score=39.62 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|+-+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999754
No 270
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=69.74 E-value=5.6 Score=43.34 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=50.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c----ccc-C-CCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A----GRG-I-DIPD 582 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~----~~G-i-DIp~ 582 (671)
++++||+|+++.-+..+++.+... ++.+..+||+.+...+...+. +..+|+|+|.- + ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888888877765 899999999986554322221 24789999942 2 222 3 5667
Q ss_pred CcEEEE
Q 038133 583 VAHVIN 588 (671)
Q Consensus 583 v~~VI~ 588 (671)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788874
No 271
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=69.70 E-value=2 Score=39.40 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=17.0
Q ss_pred CCCcEEEEcCCCChHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll 307 (671)
.++.++++|++|||||.++-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 456799999999999976543
No 272
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.65 E-value=8 Score=39.83 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=54.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++.-|..++..+.. .++.+..++|+.+..+....+ .. .+.|+|+|. .+. ..+++..
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKS----EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA-RGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS-SSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh-cCCCccc
Confidence 467899999999999877766654 578899999998866544333 23 478999993 333 3445788
Q ss_pred ccEEEEcccc
Q 038133 402 CNYVVLDEAD 411 (671)
Q Consensus 402 ~~~vViDEah 411 (671)
+++||.-...
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 8998875544
No 273
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=69.25 E-value=2.7 Score=39.63 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=17.1
Q ss_pred HhCCCcEEEEcCCCChHHHHH
Q 038133 285 GLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 285 il~~rd~ii~a~TGsGKT~~~ 305 (671)
+..++-++++||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345678999999999999754
No 274
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=68.96 E-value=5 Score=38.81 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
++++.++.|+|||..++-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 588999999999988766665554
No 275
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=68.43 E-value=3.8 Score=38.84 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=49.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc--------CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-----cccc-cCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL--------GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGR-GID 579 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~--------~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-----~~~~-GiD 579 (671)
+.++||.|+++.-+..+++.+... +..+..++|+.+..... ..+ .+..+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 568999999999998888877654 57788899987643321 111 24678999994 2222 456
Q ss_pred CCCCcEEEE
Q 038133 580 IPDVAHVIN 588 (671)
Q Consensus 580 Ip~v~~VI~ 588 (671)
+.++++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 677888774
No 276
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=68.39 E-value=2.6 Score=43.13 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.4
Q ss_pred cEEEEcCCCChHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~ 308 (671)
.++++||||||||..+...
T Consensus 7 ~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999765443
No 277
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=67.98 E-value=3 Score=40.72 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999997543
No 278
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=67.98 E-value=2.7 Score=39.41 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChHHHH
Q 038133 289 RDVIGIAETGSGKTAA 304 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~ 304 (671)
|-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999975
No 279
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=67.65 E-value=2.6 Score=39.03 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
+..++++|++|||||.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 10 GINILITGTPGTGKTSMA 27 (184)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457999999999999764
No 280
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=67.52 E-value=18 Score=40.92 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=56.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHH---Hhc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFR---IRQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+|+.-|..+...+.. .|+.+..++|+.+..+.... +.. .++|+|||. .+.. .+.+..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~-GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLRE-GLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCT-TCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHh----cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhc-CccCCC
Confidence 578999999999999876665554 58888889988776554433 333 488999993 2333 345778
Q ss_pred ccEEEEcccchh
Q 038133 402 CNYVVLDEADRM 413 (671)
Q Consensus 402 ~~~vViDEah~~ 413 (671)
+++||+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999998888754
No 281
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=67.29 E-value=3.4 Score=39.03 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|+-++++||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5667899999999999754
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=67.28 E-value=3.1 Score=38.86 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|.-++++||+|||||..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999754
No 283
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=67.23 E-value=4.4 Score=49.19 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=25.1
Q ss_pred CcEEEEecCh-hhHHHHHHHHHHcCCeEEEecC
Q 038133 515 KTAIVFVNTK-KNADMVAKNLDKLGYRVTTLHG 546 (671)
Q Consensus 515 ~~iIVF~~~~-~~~~~l~~~L~~~~~~v~~lhg 546 (671)
..+.|.|.+. ..+..+...|...|+++....|
T Consensus 343 ~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 343 KDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred hheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 4588888887 4788899999998888776544
No 284
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=66.96 E-value=3.4 Score=38.58 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|.-+.++||+|||||..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566889999999999753
No 285
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=66.88 E-value=1.3 Score=44.19 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=26.4
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH-h-CCCcEEEEcCCCChHHHHH
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQ-MAAIPLG-L-QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q-~~ai~~i-l-~~rd~ii~a~TGsGKT~~~ 305 (671)
|-.+|++.+-..++.+.|.+.- ..|+. ..++..+ + -.+.+++.||+|+|||+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 4457888776677766665421 11211 1122211 1 1245999999999999753
No 286
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=66.77 E-value=2.9 Score=38.65 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|.-++++|++|||||..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566899999999999753
No 287
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=66.74 E-value=26 Score=40.33 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=54.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhh-------cCcEEEEEECCCchHHHHHHHhc---------CCeEEEEcchHHH
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHY-------LGIKVVSIVGGQSIEEQGFRIRQ---------GCEVVIATPGRLI 389 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~-------~~i~v~~~~gg~~~~~~~~~l~~---------~~~IiI~Tp~~L~ 389 (671)
.+..+||.+|++.-+..++..+...+.. .++.+..++|+.+..++...+.. ...|||+|.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~---- 377 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN---- 377 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc----
Confidence 4678999999999999888888764332 47889999999987776554432 357999993
Q ss_pred HHHhhcccccCCccEEEE
Q 038133 390 DCLERRYAVLNQCNYVVL 407 (671)
Q Consensus 390 ~~l~~~~~~l~~~~~vVi 407 (671)
.++.. +.+..+.+||-
T Consensus 378 -iae~G-idIp~v~~VId 393 (773)
T 2xau_A 378 -IAETS-LTIDGIVYVVD 393 (773)
T ss_dssp -HHHHT-CCCTTEEEEEE
T ss_pred -HHHhC-cCcCCeEEEEe
Confidence 33433 34677777664
No 288
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=66.73 E-value=24 Score=36.57 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=51.6
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
...++||.|+++.-+..++..+.. .++.+..++|+.+..+....+ .. ...|+|+|. .+. ..+++..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidi~~ 344 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA-RGLDVPQ 344 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS-SSCCCTT
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHh----CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh-CcCCccc
Confidence 356899999999999877666654 578899999998866544332 22 478999994 333 3345778
Q ss_pred ccEEEE
Q 038133 402 CNYVVL 407 (671)
Q Consensus 402 ~~~vVi 407 (671)
+++||.
T Consensus 345 v~~Vi~ 350 (410)
T 2j0s_A 345 VSLIIN 350 (410)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 289
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=66.72 E-value=2.6 Score=43.33 Aligned_cols=19 Identities=42% Similarity=0.448 Sum_probs=16.5
Q ss_pred hCCCcEEEEcCCCChHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~ 304 (671)
..|..++++||||||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3688999999999999963
No 290
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=66.67 E-value=13 Score=38.22 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=52.2
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-----c-cccCCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----A-GRGIDIPD 582 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-----~-~~GiDIp~ 582 (671)
.++++||.|+++.-+..+++.+... +..+..++|+.+.......+. ..+|+|+|.- + ...+++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3568999999999998888877664 678999999998766554443 4689999942 1 22455667
Q ss_pred CcEEEE
Q 038133 583 VAHVIN 588 (671)
Q Consensus 583 v~~VI~ 588 (671)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 787774
No 291
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=66.49 E-value=3 Score=43.02 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.2
Q ss_pred cEEEEcCCCChHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~ 308 (671)
-++|+||||||||..+...
T Consensus 9 lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHH
Confidence 4789999999999765443
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=66.16 E-value=3.8 Score=37.09 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
+..++++|+.|||||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999754
No 293
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=66.16 E-value=26 Score=38.24 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=28.4
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~ 345 (671)
.|.-+++.|++|+|||......+-. +. ..|..++++++... ..|+..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~-~~----------~~G~~vi~~~~ee~-~~~l~~ 326 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN-AC----------ANKERAILFAYEES-RAQLLR 326 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH-HH----------TTTCCEEEEESSSC-HHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH-HH----------hCCCCEEEEEEeCC-HHHHHH
Confidence 4566889999999999654443322 21 13556777776543 234443
No 294
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=66.15 E-value=4.1 Score=41.27 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
....+++.||+|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4568999999999999754
No 295
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=66.00 E-value=2.7 Score=38.25 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
-++++|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999764
No 296
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=65.74 E-value=3.8 Score=37.96 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
+-+.++||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999753
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=65.74 E-value=2.9 Score=38.46 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
+.-++++|+.|||||.+.-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999997643
No 298
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=65.43 E-value=2.7 Score=37.89 Aligned_cols=17 Identities=12% Similarity=-0.152 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFV 306 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~l 306 (671)
-++++|+.|||||.++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 299
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=65.42 E-value=7 Score=37.21 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCC----CcEEEEcCCCChHHHHH
Q 038133 261 ELLRAVERVGYKNPSPIQMAAIPLGLQQ----RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 261 ~i~~~i~~~g~~~p~~~Q~~ai~~il~~----rd~ii~a~TGsGKT~~~ 305 (671)
.|.+.|+-.|+ .+... ..++..++.+ +.+++.||.|+|||..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 45555553343 33333 3344444443 35899999999999654
No 300
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=65.31 E-value=15 Score=37.99 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=52.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHH---hc-CCeEEEEcchHHHHHHhhcccccCC
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI---RQ-GCEVVIATPGRLIDCLERRYAVLNQ 401 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~~IiI~Tp~~L~~~l~~~~~~l~~ 401 (671)
.+.++||.|+++.-+..++..+.. .++.+..++|+.+..+....+ .. ...|+|+|. .+. ..+++..
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gidip~ 326 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITD----LGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT-RGIDIQA 326 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHH----HTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS-SSCCCTT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHh----cCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc-cCCCccC
Confidence 467899999999999877766655 478899999998866544332 23 478999993 222 2345778
Q ss_pred ccEEEEc
Q 038133 402 CNYVVLD 408 (671)
Q Consensus 402 ~~~vViD 408 (671)
+++||.-
T Consensus 327 ~~~Vi~~ 333 (400)
T 1s2m_A 327 VNVVINF 333 (400)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 8888753
No 301
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=65.30 E-value=2.5 Score=41.96 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=30.4
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCChHHHHH
Q 038133 249 PMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGL--QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 249 pi~~f~e~~l~~~i~~~i~~~g~~~p~~~Q~~ai~~il--~~rd~ii~a~TGsGKT~~~ 305 (671)
|-.+|+++.-.+.+...+..+-.. . -...++..+- -.+.++++||+|+|||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 445687776667666666544110 0 0011222211 1245999999999999654
No 302
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=65.20 E-value=3.7 Score=43.32 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=15.5
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
-++|+||||||||..+...+
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 37889999999997665443
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=65.14 E-value=6.6 Score=36.05 Aligned_cols=23 Identities=17% Similarity=-0.006 Sum_probs=15.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
-+.++|+.|||||... ..++..+
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhh
Confidence 3778899999999643 3334444
No 304
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=64.31 E-value=4.7 Score=41.93 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=19.4
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|-+ ++.-|.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4666777776 666689999999874
No 305
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.27 E-value=4.7 Score=42.62 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=19.9
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5677778877 566789999999875
No 306
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=64.15 E-value=7.5 Score=39.13 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=49.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc-----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccc------c-ccCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL-----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA------G-RGIDIP 581 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~~------~-~GiDIp 581 (671)
...+||.++++.-|..+++.+... ++.+..++|+...... .....+|||+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999988888765 4677788877653211 13567899999521 1 357788
Q ss_pred CCcEEEEc
Q 038133 582 DVAHVINY 589 (671)
Q Consensus 582 ~v~~VI~~ 589 (671)
++.+||.-
T Consensus 235 ~l~~lVlD 242 (300)
T 3fmo_B 235 KIKVFVLD 242 (300)
T ss_dssp GCSEEEET
T ss_pred hceEEEEe
Confidence 89988843
No 307
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=64.00 E-value=4.9 Score=41.16 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=19.3
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4556677776 667789999999874
No 308
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=63.85 E-value=7.1 Score=32.59 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=35.0
Q ss_pred HHHHHh-CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCC
Q 038133 507 RLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKS 549 (671)
Q Consensus 507 ~ll~~~-~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~ 549 (671)
..+... ...+++|||.+-..+...+..|...|+++..+.||+.
T Consensus 47 ~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 47 EKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 333333 3678999999988889999999999999999999864
No 309
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=63.72 E-value=2.9 Score=38.22 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|.-+.++||+|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3455889999999999754
No 310
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.42 E-value=6.6 Score=42.09 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEec
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAP 335 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~P 335 (671)
|.-+++.|++|+|||..++-.+...+. .|..++|+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~-----------~g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSD-----------NDDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHH-----------TTCEEEEECS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHH-----------cCCEEEEEEC
Confidence 345889999999999766665555543 3566777764
No 311
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=63.16 E-value=3.8 Score=41.24 Aligned_cols=18 Identities=17% Similarity=-0.040 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
+.+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997543
No 312
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=63.09 E-value=5 Score=42.42 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=19.2
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4566677766 666789999999874
No 313
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=62.95 E-value=6.9 Score=39.17 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFV 306 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~l 306 (671)
.+++.||+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 69999999999997654
No 314
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=62.89 E-value=3.5 Score=43.19 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.6
Q ss_pred hCCCcEEEEcCCCChHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~ 304 (671)
..|..++++||||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566789999999999964
No 315
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=62.83 E-value=3 Score=37.96 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
+..++++|+.|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 446889999999999754
No 316
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=62.62 E-value=4.8 Score=38.45 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|.-+.++||+|+|||..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667999999999999643
No 317
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=62.46 E-value=10 Score=41.33 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYI 313 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l 313 (671)
+-++++.|.||||||.+.-..++..+
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999965433333334
No 318
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=62.36 E-value=4.7 Score=41.61 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=18.8
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4555667766 567789999999874
No 319
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=62.02 E-value=88 Score=36.25 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=16.6
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~ 309 (671)
.+++++||+|+|||..+-..+
T Consensus 192 ~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 479999999999997654433
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=62.00 E-value=4.8 Score=37.66 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.+.-++++|+.|||||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999754
No 321
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=61.97 E-value=5.6 Score=41.19 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=18.8
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4556677766 666789999999874
No 322
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=61.82 E-value=4.9 Score=41.62 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=20.1
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5677788877 566789999999875
No 323
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=61.80 E-value=5.6 Score=41.43 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4556677776 566789999999874
No 324
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=61.78 E-value=4.7 Score=41.95 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
...+++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997653
No 325
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=61.75 E-value=5.5 Score=41.56 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4556677776 566789999999874
No 326
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=61.60 E-value=5.6 Score=41.15 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4556677766 666789999999874
No 327
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=61.59 E-value=5.7 Score=40.74 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=19.6
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 5666777776 666789999999874
No 328
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=61.49 E-value=5.6 Score=41.26 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 4556677776 667789999999874
No 329
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=61.46 E-value=5.7 Score=41.18 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=19.4
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4566678877 566789999999874
No 330
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=61.42 E-value=53 Score=34.44 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=24.3
Q ss_pred CcHHHHHHHHHHh---CCCcEEEEcCCCChHHHHHH
Q 038133 274 PSPIQMAAIPLGL---QQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 274 p~~~Q~~ai~~il---~~rd~ii~a~TGsGKT~~~l 306 (671)
|-..=..+|..++ .|+.+.++||+|+|||....
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 3344455666665 57889999999999997653
No 331
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=61.39 E-value=6.1 Score=37.26 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFV 306 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~l 306 (671)
.+++.||+|+|||..+-
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999996543
No 332
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=61.35 E-value=5.8 Score=40.99 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=19.2
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4566677876 566789999999874
No 333
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=61.30 E-value=17 Score=33.57 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=18.9
Q ss_pred CeEEEEcchHHHHHHhhcccccCCccEEEEcccc
Q 038133 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 411 (671)
Q Consensus 378 ~~IiI~Tp~~L~~~l~~~~~~l~~~~~vViDEah 411 (671)
.+++-+.+..+...+..- ...+++||||=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCC
Confidence 455655556665555431 2458899998654
No 334
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=61.25 E-value=3.7 Score=37.71 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
|..++++|+.|||||.++-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44689999999999976433
No 335
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=61.11 E-value=5.8 Score=41.14 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=19.2
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4566677776 566789999999874
No 336
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=60.99 E-value=5.6 Score=41.35 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=19.2
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4566677876 566789999999874
No 337
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=60.88 E-value=5.9 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4566677776 566689999999874
No 338
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=60.85 E-value=7.7 Score=39.58 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~ 309 (671)
++-+.++|++|+|||......+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3457888999999997654433
No 339
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=60.83 E-value=4.3 Score=39.20 Aligned_cols=73 Identities=22% Similarity=0.432 Sum_probs=50.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-----cccc---cCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGR---GIDIP 581 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-----~~~~---GiDIp 581 (671)
+..+||.++++.-+..+++.+... ++.+..++|+..... .......+..+|+|+|. .+.. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 457999999999999999888776 667777776532211 11122346789999993 2222 47888
Q ss_pred CCcEEEEc
Q 038133 582 DVAHVINY 589 (671)
Q Consensus 582 ~v~~VI~~ 589 (671)
++.+||.-
T Consensus 175 ~~~~lViD 182 (245)
T 3dkp_A 175 SVEWLVVD 182 (245)
T ss_dssp TCCEEEES
T ss_pred cCcEEEEe
Confidence 88888743
No 340
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=60.82 E-value=6 Score=41.26 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=18.9
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++..|.||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4556677776 666789999999764
No 341
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=60.73 E-value=5.4 Score=37.71 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=16.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~ 311 (671)
-.++.|+.|||||..++.-++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999876544333
No 342
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=60.67 E-value=5.2 Score=37.70 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=16.2
Q ss_pred HHhCCCcEEEEcCCCChHHHHH
Q 038133 284 LGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 284 ~il~~rd~ii~a~TGsGKT~~~ 305 (671)
.+..|.-+.++||+|+|||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4556777899999999999653
No 343
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=60.50 E-value=4.6 Score=43.45 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
++.+++.||+|+|||..+-.
T Consensus 63 ~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHH
Confidence 36799999999999976543
No 344
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=60.43 E-value=5.2 Score=41.71 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++..|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667778877 566789999999874
No 345
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=60.41 E-value=5.7 Score=38.99 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=18.1
Q ss_pred hCCCcEEEEcCCCChHHHHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~~ll 307 (671)
+.+..++++|++|||||.++-+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3588999999999999976433
No 346
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=60.35 E-value=5.9 Score=37.37 Aligned_cols=30 Identities=13% Similarity=0.008 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCChHHHHHH
Q 038133 276 PIQMAAIPLGLQQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 276 ~~Q~~ai~~il~~rd~ii~a~TGsGKT~~~l 306 (671)
+.++.. ..+..+.-++++|+.|||||..+-
T Consensus 14 ~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 14 RSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp HHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred HHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 444433 334456678999999999997543
No 347
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=60.27 E-value=9.1 Score=35.11 Aligned_cols=20 Identities=30% Similarity=0.077 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
+.-++++|+.|||||..+-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 34588999999999976543
No 348
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=60.24 E-value=4.7 Score=41.69 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=19.4
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4566677776 566789999999875
No 349
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=60.18 E-value=14 Score=34.26 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=22.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhh
Q 038133 291 VIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~L 339 (671)
+++.|++|||||.-+...+ . . +..++|++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la-----~---------~-~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-----G---------D-APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-----C---------S-CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHH-----h---------c-CCCeEEEecCCCC
Confidence 6899999999996543222 1 1 4457888876544
No 350
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.06 E-value=5.6 Score=42.17 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=19.5
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++..|.||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5667777766 566789999999874
No 351
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=59.93 E-value=21 Score=41.15 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=52.8
Q ss_pred HHhCCCcEEEEecChhhHHHHHHHHHH----cCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c-----c----
Q 038133 510 DELGDKTAIVFVNTKKNADMVAKNLDK----LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A-----G---- 575 (671)
Q Consensus 510 ~~~~~~~iIVF~~~~~~~~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~-----~---- 575 (671)
....+..++|.+++..-|...++.+.. .|+.+.++.|+++...+.... .++|+|+|+- + .
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 444577899999999888777766543 489999999999987665442 3799999962 2 1
Q ss_pred ---ccCCCCCCcEEE
Q 038133 576 ---RGIDIPDVAHVI 587 (671)
Q Consensus 576 ---~GiDIp~v~~VI 587 (671)
..++...++++|
T Consensus 194 ~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAV 208 (844)
T ss_dssp SSGGGCCCCCCCEEE
T ss_pred cchhhhcccCCCEEE
Confidence 235667788777
No 352
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=59.81 E-value=16 Score=42.17 Aligned_cols=71 Identities=11% Similarity=0.167 Sum_probs=48.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c----ccc-C-CCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A----GRG-I-DIPD 582 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~----~~G-i-DIp~ 582 (671)
++++||.|+++.-+..+...+... ++.+..+||+.+...+...+. +..+|+|+|.- + ..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999988888877765 899999999987655432222 35789999942 2 222 3 5667
Q ss_pred CcEEEE
Q 038133 583 VAHVIN 588 (671)
Q Consensus 583 v~~VI~ 588 (671)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788884
No 353
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=59.55 E-value=9.6 Score=38.54 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
+.-+.++||+|+|||...-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3458889999999997543
No 354
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=59.38 E-value=11 Score=39.98 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=39.2
Q ss_pred CCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhc-CCeEEEEc
Q 038133 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQ-GCEVVIAT 384 (671)
Q Consensus 327 g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~~IiI~T 384 (671)
+.++||+||++.-+..+++.+.+. ++++..++|... ......+.. ..+|+|+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTH-HHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccH-HHHHHhhcCCCCeEEEEC
Confidence 557999999999999887777664 788999988743 223333333 58999999
No 355
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=59.33 E-value=6.6 Score=32.36 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=32.5
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKS 549 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~ 549 (671)
...+++|||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3678999999988899999999999999999999854
No 356
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=59.24 E-value=6.3 Score=41.31 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=19.8
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAFV 306 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~l 306 (671)
.+..++.|.+ ++.-|.||||||.+..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 4566777876 6667899999998753
No 357
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=59.21 E-value=6.6 Score=35.04 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=13.0
Q ss_pred EEEEcCCCChHHHHH
Q 038133 291 VIGIAETGSGKTAAF 305 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ 305 (671)
.+++||+|+|||.++
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999753
No 358
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=59.05 E-value=4.1 Score=37.52 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
.-++++|+.|||||..+-
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999997643
No 359
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=58.84 E-value=20 Score=41.38 Aligned_cols=79 Identities=14% Similarity=0.018 Sum_probs=54.3
Q ss_pred HHHHHHH-HHhCCCcEEEEecChhhHHHHHHHHH----HcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c--
Q 038133 503 SRLQRLL-DELGDKTAIVFVNTKKNADMVAKNLD----KLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A-- 574 (671)
Q Consensus 503 ~~L~~ll-~~~~~~~iIVF~~~~~~~~~l~~~L~----~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~-- 574 (671)
..++-++ ....+..++|.+++..-|...++.+. ..|+.+.++.|+++...+.... .++|+|+|+- +
T Consensus 103 af~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~f 176 (853)
T 2fsf_A 103 TATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGF 176 (853)
T ss_dssp HHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhH
Confidence 3333333 33456789999999988877666554 4489999999999986555433 3799999962 2
Q ss_pred ---ccc-------CCCCCCcEEE
Q 038133 575 ---GRG-------IDIPDVAHVI 587 (671)
Q Consensus 575 ---~~G-------iDIp~v~~VI 587 (671)
..+ +...++.++|
T Consensus 177 DyLrd~~~~~~~~~~~~~l~~lV 199 (853)
T 2fsf_A 177 DYLRDNMAFSPEERVQRKLHYAL 199 (853)
T ss_dssp HHHHHTTCSSGGGCCCCSCCEEE
T ss_pred HHHHhhhhccHhHhcccCCcEEE
Confidence 222 4556777777
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=58.71 E-value=6.8 Score=36.06 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCChHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll 307 (671)
.+.-++++|+.|||||.++-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456799999999999976433
No 361
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=58.70 E-value=7.1 Score=31.97 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=32.5
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKS 549 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~ 549 (671)
...+++|||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3678999999988899999999999999999999854
No 362
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=58.62 E-value=9.7 Score=32.68 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=32.1
Q ss_pred CC-CcEEEEe-cChhhHHHHHHHHHHcCCeEEEecCCCCH
Q 038133 513 GD-KTAIVFV-NTKKNADMVAKNLDKLGYRVTTLHGGKSQ 550 (671)
Q Consensus 513 ~~-~~iIVF~-~~~~~~~~l~~~L~~~~~~v~~lhg~~~~ 550 (671)
.. .++|||| .+-..+..++..|...|+++..+.||+..
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 35 7899999 57677889999999999999999998753
No 363
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=58.46 E-value=6 Score=41.32 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=18.8
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 4555667766 667789999999874
No 364
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=58.27 E-value=5.1 Score=37.46 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCChHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~l 306 (671)
.+.-++++|++|||||..+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45568899999999997643
No 365
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.24 E-value=14 Score=48.95 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHH----HHHHHhCCCcEEEEcCCCChHHHHHHH
Q 038133 258 LTPELLRAVERVGYKNPSPIQMA----AIPLGLQQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 258 l~~~i~~~i~~~g~~~p~~~Q~~----ai~~il~~rd~ii~a~TGsGKT~~~ll 307 (671)
|...+.+++.+.|+ .|.|.+.. ....+.....++++||||||||.++-.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 44556667778888 56665533 234444567799999999999987543
No 366
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=58.21 E-value=6.1 Score=37.90 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=15.6
Q ss_pred hCCCcEEEEcCCCChHHHH
Q 038133 286 LQQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 286 l~~rd~ii~a~TGsGKT~~ 304 (671)
-.|.-++++||.|+|||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4567789999999999975
No 367
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=58.18 E-value=5.4 Score=37.24 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
.-++++|+.|||||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999997643
No 368
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.17 E-value=7.8 Score=39.46 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
.++++.||+|+|||..+-
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 359999999999996543
No 369
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=58.10 E-value=21 Score=35.57 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=51.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c----c-ccCCCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A----G-RGIDIPDV 583 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~----~-~GiDIp~v 583 (671)
+.++||.|+++.-+..+++.+... +..+..+||+.+....... +. ..+|+|+|.- + . ..+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 678999999999999999888764 5788999999887654332 32 3789999942 1 2 23456777
Q ss_pred cEEEE
Q 038133 584 AHVIN 588 (671)
Q Consensus 584 ~~VI~ 588 (671)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87774
No 370
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=58.05 E-value=39 Score=28.00 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=39.2
Q ss_pred EEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEE
Q 038133 517 AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568 (671)
Q Consensus 517 iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VL 568 (671)
.+||.....-...+...++..|+.++.++++.....|..-++.|.....+|-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 3566666777777788888888888888888888888888888876555543
No 371
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=57.96 E-value=6 Score=36.15 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
-.+++||+|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3789999999999653
No 372
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=57.90 E-value=3 Score=41.00 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999997653
No 373
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=57.82 E-value=4.6 Score=37.13 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
.-++++|++|||||..+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999997653
No 374
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=57.77 E-value=9.5 Score=38.52 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
|.-+.++||+|+|||...-
T Consensus 100 g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4458899999999997543
No 375
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=57.62 E-value=5.8 Score=41.64 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=18.3
Q ss_pred HHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 282 IPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 282 i~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
+..++.|.+ ++.-|.||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 455677766 566789999999874
No 376
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=57.38 E-value=6.4 Score=35.74 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.0
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.++++|+.|||||.++-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 589999999999976543
No 377
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=57.37 E-value=5.8 Score=36.53 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
-++++||+|+|||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4788999999999754
No 378
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=57.25 E-value=7.2 Score=39.66 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=12.5
Q ss_pred EEEEcCCCChHHHH
Q 038133 291 VIGIAETGSGKTAA 304 (671)
Q Consensus 291 ~ii~a~TGsGKT~~ 304 (671)
+++.|+.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 78899999999964
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=57.23 E-value=4.6 Score=37.58 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.+.-++++|+.|||||.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999764
No 380
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=57.21 E-value=11 Score=34.71 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=12.8
Q ss_pred cEEEEcCCCChHHHH
Q 038133 290 DVIGIAETGSGKTAA 304 (671)
Q Consensus 290 d~ii~a~TGsGKT~~ 304 (671)
-++++|+.|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478899999999964
No 381
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=56.91 E-value=13 Score=42.16 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=46.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhc-CCeEEEEcchHHHHHHhhcccccCCccE
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQ-GCEVVIATPGRLIDCLERRYAVLNQCNY 404 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~ 404 (671)
.+.++||+||++.-+..++..+.. .++++..++|. ........+.. ..+|+|+| +.+.... ++. +.+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~----~g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e~GI-Dip-v~~ 476 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQR----AGKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISEMGA-NFG-ASR 476 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGGTTC-CCC-CSE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHh----CCCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhhcce-eeC-CcE
Confidence 467899999999999877766654 47889999984 33333333333 47899999 3444433 355 666
Q ss_pred EE
Q 038133 405 VV 406 (671)
Q Consensus 405 vV 406 (671)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 382
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=56.88 E-value=9 Score=30.91 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=31.0
Q ss_pred CcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCC
Q 038133 515 KTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKS 549 (671)
Q Consensus 515 ~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~ 549 (671)
.+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888999999999999888888864
No 383
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=56.84 E-value=15 Score=41.41 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=49.9
Q ss_pred CcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-----ccccc-C-CCCCC
Q 038133 515 KTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGRG-I-DIPDV 583 (671)
Q Consensus 515 ~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-----~~~~G-i-DIp~v 583 (671)
+++||.++++.-+...++.+... ++.+..++|+.+...+...+ . ...+|+|+|. .+..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999999888888888765 78999999988643322222 1 2489999994 22233 3 56778
Q ss_pred cEEEE
Q 038133 584 AHVIN 588 (671)
Q Consensus 584 ~~VI~ 588 (671)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88884
No 384
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=56.71 E-value=17 Score=44.12 Aligned_cols=62 Identities=15% Similarity=0.058 Sum_probs=42.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhcCCC-CCcccccCCCeEEEEecchhhHHHHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPMLTYISRLPP-ISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~l~~l~~~~~-~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~ 351 (671)
..+|.|.-|||||.+...-++..+..... ........-..+|+|+=|+.-|..+.+.+....
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 46999999999999877777777753110 000011234579999999999998877766654
No 385
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=56.69 E-value=4.8 Score=36.93 Aligned_cols=18 Identities=22% Similarity=0.160 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
-++++|+.|||||..+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999976433
No 386
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=56.47 E-value=6.5 Score=35.38 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
+++++.|+.|||||.++-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999986543
No 387
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=56.09 E-value=4.4 Score=40.66 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
-++++|++|||||..+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999754
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=56.08 E-value=5.2 Score=36.10 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.8
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.++++|+.|||||.++-.
T Consensus 4 ~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CEEEESCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999976533
No 389
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=56.07 E-value=11 Score=40.26 Aligned_cols=69 Identities=22% Similarity=0.176 Sum_probs=44.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhc-CCeEEEEcchHHHHHHhhcccccCCccE
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQ-GCEVVIATPGRLIDCLERRYAVLNQCNY 404 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~ 404 (671)
.+.++||+||++.-|..+++.+.. .++++..++|.. .......+.. ..+|+|+|. .+... +++. +++
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~-----v~e~G-iDip-v~~ 243 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRK----AGKSVVVLNRKT-FEREYPTIKQKKPDFILATD-----IAEMG-ANLC-VER 243 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHH----TTCCEEECCSSS-CC--------CCCSEEEESS-----STTCC-TTCC-CSE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHH----cCCCEEEecchh-HHHHHhhhcCCCceEEEECC-----hhhee-eccC-ceE
Confidence 367899999999999988777665 378888888843 2233333333 489999993 33433 3466 777
Q ss_pred EE
Q 038133 405 VV 406 (671)
Q Consensus 405 vV 406 (671)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 390
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=55.99 E-value=7.4 Score=36.90 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=15.6
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll~~ 309 (671)
.+++.||+||||++.+-..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999998765443
No 391
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=55.87 E-value=7.9 Score=41.40 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|-+ ++.-|.||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4556677766 666789999999874
No 392
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=55.77 E-value=28 Score=40.35 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=53.0
Q ss_pred HHHhCCCcEEEEecChhhHHHHHHHHH----HcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c-----cc--
Q 038133 509 LDELGDKTAIVFVNTKKNADMVAKNLD----KLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A-----GR-- 576 (671)
Q Consensus 509 l~~~~~~~iIVF~~~~~~~~~l~~~L~----~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~-----~~-- 576 (671)
+....+..++|.+++..-|...++.+. ..|+.+.++.|+++...+.... .++|+++|+- + ..
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhh
Confidence 344557789999999887766666554 4599999999999987665543 3799999962 2 11
Q ss_pred -----cCCCCCCcEEEE
Q 038133 577 -----GIDIPDVAHVIN 588 (671)
Q Consensus 577 -----GiDIp~v~~VI~ 588 (671)
.+....++++|.
T Consensus 221 ~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp CSSGGGCCCCCCCEEEE
T ss_pred hccHhhhccCCCCEEEE
Confidence 355667777773
No 393
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=55.69 E-value=10 Score=35.23 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=43.8
Q ss_pred CCcEEEEecChhhHHH-HHHHHHHc---CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc-c----cc-------c
Q 038133 514 DKTAIVFVNTKKNADM-VAKNLDKL---GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A----GR-------G 577 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~-l~~~L~~~---~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~~-~----~~-------G 577 (671)
..++||+|++..-+.. +.+.+... ++.+..++|+.....+...+. +..+|+|+|.- + .. +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 6789999999988777 65555544 678889998765332211111 24789999942 2 12 2
Q ss_pred CCCCCCcEEEE
Q 038133 578 IDIPDVAHVIN 588 (671)
Q Consensus 578 iDIp~v~~VI~ 588 (671)
+.+.++++||.
T Consensus 158 ~~~~~~~~iIi 168 (216)
T 3b6e_A 158 VQLSDFSLIII 168 (216)
T ss_dssp CCGGGCSEEEE
T ss_pred cchhcccEEEE
Confidence 55667777774
No 394
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=55.42 E-value=4.9 Score=38.55 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=11.5
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|.-+.++||+|||||..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999653
No 395
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=55.42 E-value=55 Score=33.68 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=53.3
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHc----CCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-----ccc-ccCCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKL----GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAG-RGIDIPD 582 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-----~~~-~GiDIp~ 582 (671)
.+.++||.++++.-+..+++.+... +..+..++|+..... ....+..+..+|+|+|. .+. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3678999999999998888888765 677888888876543 34556667889999994 222 2356667
Q ss_pred CcEEEE
Q 038133 583 VAHVIN 588 (671)
Q Consensus 583 v~~VI~ 588 (671)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 787774
No 396
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=55.22 E-value=14 Score=41.68 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=49.4
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhcCCeEEEEcchHHHHHHhhcccccCCccEE
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYV 405 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~~~~IiI~Tp~~L~~~l~~~~~~l~~~~~v 405 (671)
.+.++||.|||+.-+..+++.+.+ .++.+..++|+.+..+. ...+..|+|+| +.+.+... +. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerGID-Id-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTGYT-GD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHHCC-CC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHccCC-CC-CcEE
Confidence 567899999999999977766654 57899999999876542 23467999999 44454443 44 7776
Q ss_pred E
Q 038133 406 V 406 (671)
Q Consensus 406 V 406 (671)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 397
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=55.20 E-value=8.1 Score=42.01 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=30.1
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEET 347 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~ 347 (671)
.|.-+++.|++|+|||..++-.+...... .|..++|+.-- .-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~----------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA----------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT----------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh----------cCCcEEEEecc-CCHHHHHHHH
Confidence 34558899999999997665555544321 25567776542 2234444433
No 398
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=54.93 E-value=12 Score=32.10 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=33.8
Q ss_pred HHHHHh-CCCcEEEEecChhh--HHHHHHHHHHcCCeEEEecCCCC
Q 038133 507 RLLDEL-GDKTAIVFVNTKKN--ADMVAKNLDKLGYRVTTLHGGKS 549 (671)
Q Consensus 507 ~ll~~~-~~~~iIVF~~~~~~--~~~l~~~L~~~~~~v~~lhg~~~ 549 (671)
..+... .+.++||||.+-.. +..++..|...|+.+..+.||+.
T Consensus 63 ~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 63 TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 333333 36789999998766 78999999999999888989864
No 399
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=54.87 E-value=8.4 Score=36.98 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
+..+++.|++|||||.++-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45699999999999976543
No 400
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=54.83 E-value=7.8 Score=35.42 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.9
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.++++|+.|||||.++-.
T Consensus 4 ~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp SEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999976533
No 401
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=54.74 E-value=18 Score=33.64 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHhCCC--cEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHH
Q 038133 274 PSPIQMAAIPLGLQQR--DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342 (671)
Q Consensus 274 p~~~Q~~ai~~il~~r--d~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Q 342 (671)
..+-|..++..++..+ -.++.+.-|++||...+.-++.... ..|..|.+|+|+..-+..
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~----------~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR----------EQGREVQIIAADRRSQMN 95 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH----------HTTCCEEEECSTTHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH----------hcCeEEEEEcCchHHHHH
Confidence 3466888898887544 4778899999999886555554443 489999999999876663
No 402
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=54.71 E-value=7.9 Score=36.43 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.++++|+.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999976543
No 403
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=54.49 E-value=7.2 Score=40.59 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
-.+++||||+|||..+-.
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 377899999999976533
No 404
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=54.14 E-value=21 Score=36.39 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
-+.++||+|||||..+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999653
No 405
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=54.11 E-value=9.1 Score=31.80 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGK 548 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~ 548 (671)
..+++|||.+=..+...+..|...|+.+..+.||+
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 67899999988888899999999999988888875
No 406
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=54.05 E-value=7.1 Score=39.95 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
..+++.||+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 569999999999997543
No 407
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=53.99 E-value=7 Score=35.76 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFV 306 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~l 306 (671)
-++++|+.|||||.++-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998643
No 408
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=53.94 E-value=5.5 Score=36.36 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
|.-++++|+.|||||.++
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999754
No 409
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=53.80 E-value=5.2 Score=37.35 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
+.-++++|+.|||||..+-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 44688999999999976433
No 410
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=53.57 E-value=7.6 Score=35.83 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
.+.++||+|+|||..+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999643
No 411
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=53.57 E-value=7.6 Score=35.84 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
+.-++++|++|||||.++-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568999999999997643
No 412
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=53.55 E-value=7.1 Score=40.79 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.3
Q ss_pred HHHHHhCCCc--EEEEcCCCChHHHHH
Q 038133 281 AIPLGLQQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 281 ai~~il~~rd--~ii~a~TGsGKT~~~ 305 (671)
.+..++.|-+ ++.-|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5666777876 566689999999874
No 413
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=53.34 E-value=9.3 Score=41.20 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
..+++++||+|+|||.++-.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45799999999999976544
No 414
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=53.27 E-value=5.9 Score=36.96 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
.+.++|++|||||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999754
No 415
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=53.26 E-value=7.4 Score=36.89 Aligned_cols=19 Identities=16% Similarity=0.073 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
..+.+.|++|||||.++-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999976433
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=53.12 E-value=12 Score=38.77 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~l 306 (671)
+.-+.++||+|+|||...-
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4458899999999997543
No 417
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=53.10 E-value=9.8 Score=36.05 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
..++++|+.|||||.++-.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp CCEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999976543
No 418
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=53.07 E-value=8.8 Score=36.75 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPM 309 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~ 309 (671)
+-+++.||+||||++.+-..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 457889999999998754433
No 419
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=53.06 E-value=7.3 Score=37.15 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
..++++|++|||||.++
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999764
No 420
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=52.95 E-value=9.9 Score=35.98 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
+..++++|+.|||||..+-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34689999999999976533
No 421
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=52.93 E-value=13 Score=34.62 Aligned_cols=16 Identities=25% Similarity=-0.083 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
-+.++|++|||||..+
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999754
No 422
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=52.91 E-value=16 Score=38.95 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=46.2
Q ss_pred CCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhc-CCeEEEEcchHHHHHHhhcccccCCccEE
Q 038133 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQ-GCEVVIATPGRLIDCLERRYAVLNQCNYV 405 (671)
Q Consensus 327 g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~v 405 (671)
+.++||.||++.-|..++..+.+ .++.+..++|.... .....+.. ...|+|+| +.+.... ++.. .+|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~----~g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~~Gi-Dip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISEMGA-NFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGGSSC-CCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHH----cCCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHHhCc-CCCC-CEE
Confidence 55899999999999987776654 47888888886653 22223333 47999999 4444433 3555 665
Q ss_pred E
Q 038133 406 V 406 (671)
Q Consensus 406 V 406 (671)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 423
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=52.86 E-value=6 Score=37.03 Aligned_cols=16 Identities=38% Similarity=0.165 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
.+.+.|+.|||||.++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999764
No 424
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=52.83 E-value=6.1 Score=36.84 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
-++++|+.|||||.++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999764
No 425
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=52.79 E-value=6.8 Score=37.07 Aligned_cols=21 Identities=33% Similarity=0.150 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCChHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll 307 (671)
.|.-+.++||+|+|||..+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345689999999999965433
No 426
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=52.73 E-value=17 Score=30.01 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=32.0
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCC-eEEEecCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKLGY-RVTTLHGGKS 549 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~~~-~v~~lhg~~~ 549 (671)
.+.+++|||.+-..+..++..|...|+ ++..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 367899999998889999999999999 4888999864
No 427
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=52.58 E-value=6.3 Score=35.33 Aligned_cols=17 Identities=24% Similarity=0.075 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFV 306 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~l 306 (671)
.++++|+.|||||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 428
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=52.43 E-value=7.7 Score=36.56 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.++++|+.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999986533
No 429
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=51.87 E-value=6.9 Score=36.85 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
|.-+.++||+|||||..+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999643
No 430
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=51.73 E-value=17 Score=40.05 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHh
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYIS 314 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~ 314 (671)
.-++++.|.||||||.+.-..++..+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999665444444443
No 431
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=51.53 E-value=9.4 Score=40.72 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=17.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVLPMLT 311 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll~~l~ 311 (671)
+.++++|++|+|||..+...+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999766554433
No 432
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.42 E-value=13 Score=37.99 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=14.5
Q ss_pred EEEEcCCCChHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVL 307 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll 307 (671)
+++.||.|+|||..+..
T Consensus 49 ~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp EEEECSSSSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 89999999999976543
No 433
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=51.05 E-value=46 Score=35.71 Aligned_cols=76 Identities=16% Similarity=0.101 Sum_probs=48.9
Q ss_pred CCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHH---Hhc-CCeEEEEcchHHHHHHhhcccccCCc
Q 038133 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFR---IRQ-GCEVVIATPGRLIDCLERRYAVLNQC 402 (671)
Q Consensus 327 g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~ 402 (671)
+...+|++.+..-+.. +.+.+...+.++..++|+.+..+.... +.. .++|+|+|+..+-.- +++..+
T Consensus 347 ~~~~~ivf~~~~~~~~----l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~G-----iDip~v 417 (510)
T 2oca_A 347 DENAFVMFKHVSHGKA----IFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTG-----ISVKNL 417 (510)
T ss_dssp TCEEEEEESSHHHHHH----HHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHS-----CCCCSE
T ss_pred CCCeEEEEecHHHHHH----HHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcc-----cccccC
Confidence 4555555555555544 334444455688999998876554322 223 478999997766433 348889
Q ss_pred cEEEEcccc
Q 038133 403 NYVVLDEAD 411 (671)
Q Consensus 403 ~~vViDEah 411 (671)
++||+....
T Consensus 418 ~~vi~~~~~ 426 (510)
T 2oca_A 418 HHVVLAHGV 426 (510)
T ss_dssp EEEEESSCC
T ss_pred cEEEEeCCC
Confidence 999988776
No 434
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=51.03 E-value=7.2 Score=36.47 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCChHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll 307 (671)
.+.-++++|+.|||||.+.-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 345689999999999976533
No 435
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=51.02 E-value=9.6 Score=35.44 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFV 306 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~l 306 (671)
.++++|+.|||||.++-
T Consensus 22 ~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997643
No 436
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=50.91 E-value=7.8 Score=36.32 Aligned_cols=17 Identities=29% Similarity=0.032 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
.-+.++||+|||||..+
T Consensus 7 ~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34778899999999753
No 437
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=50.79 E-value=8.6 Score=35.55 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFV 306 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~l 306 (671)
.++++|+.|||||...-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37899999999997543
No 438
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=50.73 E-value=3.7 Score=46.59 Aligned_cols=70 Identities=21% Similarity=0.343 Sum_probs=47.7
Q ss_pred CcEEEEecChhhHHHH-HHHHHHcC---CeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc-ccc-----------ccC
Q 038133 515 KTAIVFVNTKKNADMV-AKNLDKLG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-VAG-----------RGI 578 (671)
Q Consensus 515 ~~iIVF~~~~~~~~~l-~~~L~~~~---~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~-~~~-----------~Gi 578 (671)
+++||.++++.-+..+ ++.|.... +.+..+||+.+...+...+. +..+|||+|. .+. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999998888 88887763 79999999876544332222 5689999994 222 234
Q ss_pred CCCCCcEEEE
Q 038133 579 DIPDVAHVIN 588 (671)
Q Consensus 579 DIp~v~~VI~ 588 (671)
.+.++++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677888884
No 439
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=50.68 E-value=10 Score=35.43 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=19.3
Q ss_pred cCCccEEEEcccchh--hccCChHHHHHHHH
Q 038133 399 LNQCNYVVLDEADRM--IDMGFEPQVVGVLD 427 (671)
Q Consensus 399 l~~~~~vViDEah~~--~~~~f~~~i~~il~ 427 (671)
+.+.+++|+||+..| .+..|...+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 567889999998877 33335555555554
No 440
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=50.64 E-value=5 Score=40.98 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
...+++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999754
No 441
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=50.64 E-value=6.8 Score=38.46 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
-++++|+.|||||..+-.
T Consensus 6 lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 589999999999976433
No 442
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=50.45 E-value=7.6 Score=36.37 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCChHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll 307 (671)
.+.-++++|+.|||||.++-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 355689999999999976543
No 443
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=50.38 E-value=6 Score=36.37 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
-+.++|++|||||..+-+
T Consensus 4 ~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999965433
No 444
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=50.31 E-value=7 Score=35.85 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=13.6
Q ss_pred EEEEcCCCChHHHHHH
Q 038133 291 VIGIAETGSGKTAAFV 306 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~l 306 (671)
++++|+.|||||.+.-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999997643
No 445
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=50.15 E-value=11 Score=35.55 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=13.0
Q ss_pred EEEEcCCCChHHHHH
Q 038133 291 VIGIAETGSGKTAAF 305 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ 305 (671)
.+++||+|+|||.++
T Consensus 26 ~~I~G~NgsGKStil 40 (203)
T 3qks_A 26 NLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 788999999999764
No 446
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=50.11 E-value=8.7 Score=35.93 Aligned_cols=18 Identities=28% Similarity=-0.027 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
+.-+.++|++|||||..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345789999999999754
No 447
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=50.11 E-value=10 Score=39.48 Aligned_cols=15 Identities=53% Similarity=0.758 Sum_probs=13.2
Q ss_pred EEEEcCCCChHHHHH
Q 038133 291 VIGIAETGSGKTAAF 305 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ 305 (671)
.+++|+||+|||.++
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999764
No 448
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=49.89 E-value=30 Score=40.26 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=44.7
Q ss_pred HHHhCCCcEEEEecChhhHHHHHHHHH----HcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc
Q 038133 509 LDELGDKTAIVFVNTKKNADMVAKNLD----KLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 572 (671)
Q Consensus 509 l~~~~~~~iIVF~~~~~~~~~l~~~L~----~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~ 572 (671)
+....+..++|.+++..-|...++.+. ..|+.+.++.|+++...+..+. .++|+|+|+
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 344457789999999887776666554 4599999999999987766654 379999995
No 449
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=49.88 E-value=7.8 Score=37.54 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCChHHHH
Q 038133 287 QQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~ 304 (671)
.|.-+.++||+|||||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 455688999999999963
No 450
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=49.83 E-value=13 Score=44.04 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=46.3
Q ss_pred HHHhhcCcccccCCCCCCCCCcccCC-C-CHHHHHHHHHcCCCCCc----HHHHHHHHHHh---CCCcEEEEcCCCChHH
Q 038133 232 IFREDFNISYKGSKIPRPMRNWAEGK-L-TPELLRAVERVGYKNPS----PIQMAAIPLGL---QQRDVIGIAETGSGKT 302 (671)
Q Consensus 232 ~f~~~~~i~~~g~~ip~pi~~f~e~~-l-~~~i~~~i~~~g~~~p~----~~Q~~ai~~il---~~rd~ii~a~TGsGKT 302 (671)
.|..+.-+++.|. +.-.+..|..++ + +++.+..........+- .+-..|+..++ .++.+|+.|++|+|||
T Consensus 80 Ry~~~~IYTy~G~-iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKT 158 (1052)
T 4anj_A 80 RYSKDRIYTYVAN-ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKT 158 (1052)
T ss_dssp HHHTTCCEEEETT-EEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHH
T ss_pred HHcCCCcEEeECC-EEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHH
Confidence 3555555555564 434445555553 3 66766666543333322 33444555555 3456999999999999
Q ss_pred HHHHHHHHHHHh
Q 038133 303 AAFVLPMLTYIS 314 (671)
Q Consensus 303 ~~~ll~~l~~l~ 314 (671)
.+.=. ++.|+.
T Consensus 159 estK~-im~yLa 169 (1052)
T 4anj_A 159 ENTKF-VLRYLT 169 (1052)
T ss_dssp HHHHH-HHHHHH
T ss_pred HHHHH-HHHHHH
Confidence 77543 445543
No 451
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=49.72 E-value=10 Score=39.28 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.2
Q ss_pred CCCc--EEEEcCCCChHHHHH
Q 038133 287 QQRD--VIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd--~ii~a~TGsGKT~~~ 305 (671)
.|.+ ++.-|.||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3656 678899999999874
No 452
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=49.63 E-value=9.6 Score=40.78 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
.++++++||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999764
No 453
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=49.52 E-value=18 Score=45.13 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecch
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTR 337 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr 337 (671)
++.++++|++|+|||..++..+...+. .|..++|+.-..
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~-----------~G~~vlYI~te~ 72 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQR-----------EGKTCAFIDAEH 72 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH-----------TTCCEEEECTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh-----------CCCceEEEEecC
Confidence 568999999999999877666666553 355667665543
No 454
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=49.42 E-value=5.7 Score=36.22 Aligned_cols=20 Identities=20% Similarity=-0.007 Sum_probs=11.8
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
+.-++++|+.|||||.++-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34689999999999976433
No 455
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=49.20 E-value=14 Score=41.33 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=18.4
Q ss_pred HHhCCCcEEEEcCCCChHHHHH
Q 038133 284 LGLQQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 284 ~il~~rd~ii~a~TGsGKT~~~ 305 (671)
.+..+..+++.||+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4457789999999999999754
No 456
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=48.92 E-value=7.8 Score=43.22 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHH
Q 038133 290 DVIGIAETGSGKTAA 304 (671)
Q Consensus 290 d~ii~a~TGsGKT~~ 304 (671)
+++++||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 457
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=48.75 E-value=9.1 Score=38.76 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.|.-+.++||+|||||..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677899999999999643
No 458
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=48.70 E-value=15 Score=39.74 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
.-+.++|++|+|||..+-
T Consensus 294 eVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCcccHHHHHH
Confidence 357899999999997543
No 459
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=48.32 E-value=33 Score=33.77 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=58.0
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHH--
Q 038133 296 ETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFR-- 373 (671)
Q Consensus 296 ~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~-- 373 (671)
...+||... +.-++..+.. .+.++||.+.++..+..+...+.. ..|+.+..+.|+.+..+....
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~----------~~~kvlIFs~~~~~~~~l~~~L~~---~~g~~~~~l~G~~~~~~R~~~i~ 157 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD----------EGDKIAIFTQFVDMGKIIRNIIEK---ELNTEVPFLYGELSKKERDDIIS 157 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH----------TTCCEEEEESCHHHHHHHHHHHHH---HHCSCCCEECTTSCHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh----------CCCeEEEEeccHHHHHHHHHHHHH---hcCCcEEEEECCCCHHHHHHHHH
Confidence 356899865 3444444322 577899999999888866665544 247888899999875544332
Q ss_pred -Hhc--CCe-EEEEcchHHHHHHhhcccccCCccEEEEcc
Q 038133 374 -IRQ--GCE-VVIATPGRLIDCLERRYAVLNQCNYVVLDE 409 (671)
Q Consensus 374 -l~~--~~~-IiI~Tp~~L~~~l~~~~~~l~~~~~vViDE 409 (671)
+.. .+. ++++| ... ...+++..+++||+=+
T Consensus 158 ~F~~~~~~~v~L~st-~~~-----g~Glnl~~a~~VI~~d 191 (271)
T 1z5z_A 158 KFQNNPSVKFIVLSV-KAG-----GFGINLTSANRVIHFD 191 (271)
T ss_dssp HHHHCTTCCEEEEEC-CTT-----CCCCCCTTCSEEEECS
T ss_pred HhcCCCCCCEEEEeh-hhh-----cCCcCcccCCEEEEEC
Confidence 223 355 45555 332 2344577777777533
No 460
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=48.26 E-value=9.8 Score=35.18 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
.+.++|++|||||.++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 461
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=48.14 E-value=13 Score=30.86 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=31.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCe-EEEecCCCC
Q 038133 514 DKTAIVFVNTKKNADMVAKNLDKLGYR-VTTLHGGKS 549 (671)
Q Consensus 514 ~~~iIVF~~~~~~~~~l~~~L~~~~~~-v~~lhg~~~ 549 (671)
..++||||.+-..+...+..|...|+. +..+.||+.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 678999999988899999999999994 888999854
No 462
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=48.11 E-value=9.9 Score=36.77 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
.-++++|+.|||||..+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999754
No 463
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=47.88 E-value=8.1 Score=35.56 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=13.9
Q ss_pred EEEEcCCCChHHHHHHH
Q 038133 291 VIGIAETGSGKTAAFVL 307 (671)
Q Consensus 291 ~ii~a~TGsGKT~~~ll 307 (671)
+++.|+.|||||.+.-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999976543
No 464
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=47.87 E-value=12 Score=35.32 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.+++.|+.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976533
No 465
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=47.87 E-value=38 Score=34.29 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCeEEE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKLGYRVTT 543 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~ 543 (671)
.+.+++.|| .+..=+.+.+.|+..|+.+..
T Consensus 225 ~~~~v~a~a-GIgnP~~F~~~L~~~g~~i~~ 254 (315)
T 4ehx_A 225 KEREVIAFS-GLGDNGQFRKVLKNLGIKVKE 254 (315)
T ss_dssp TTCCEEEEE-SSTHHHHHHHHHHHHTCCEEE
T ss_pred hhhhhhhhh-hcCCcHHHHHHHHHcCCceee
Confidence 456677665 457778899999999887753
No 466
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=47.86 E-value=33 Score=26.77 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=29.4
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCe-EEEecCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKLGYR-VTTLHGGKS 549 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~~~~-v~~lhg~~~ 549 (671)
...+++|||.+-..+...+..|...|+. +..+ ||+.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 3678999999988888999999999985 5556 7754
No 467
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=47.46 E-value=11 Score=36.73 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ 305 (671)
+..+.+.||+|||||.++
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999764
No 468
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=47.28 E-value=30 Score=38.66 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=46.6
Q ss_pred CCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEECCCchHHHHHHHhc-CCeEEEEcchHHHHHHhhcccccCCccE
Q 038133 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQ-GCEVVIATPGRLIDCLERRYAVLNQCNY 404 (671)
Q Consensus 326 ~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~~IiI~Tp~~L~~~l~~~~~~l~~~~~ 404 (671)
.+.++||.|+|+.-|..+++.+.+ .++++..++|.. .......+.. ...|+|+|. .+.+... +. +++
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~-R~~~l~~F~~g~~~VLVaTd-----v~~rGiD-i~-v~~ 421 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSRKT-FDTEYPKTKLTDWDFVVTTD-----ISEMGAN-FR-AGR 421 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTT-HHHHTTHHHHSCCSEEEECG-----GGGTTCC-CC-CSE
T ss_pred CCCCEEEEECChhHHHHHHHHHHH----cCCcEEEEChHH-HHHHHHhhcCCCcEEEEECc-----HHHcCcc-cC-ceE
Confidence 356899999999999987777665 478888888853 2223333333 588999993 4444433 44 666
Q ss_pred EE
Q 038133 405 VV 406 (671)
Q Consensus 405 vV 406 (671)
||
T Consensus 422 VI 423 (618)
T 2whx_A 422 VI 423 (618)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 469
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=47.28 E-value=35 Score=35.22 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=19.6
Q ss_pred EcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEe
Q 038133 294 IAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA 334 (671)
Q Consensus 294 ~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~ 334 (671)
.+.-|.|||.+++..+..... .|.++|++=
T Consensus 150 s~KGGvGKTT~a~nLA~~La~-----------~g~rVlliD 179 (373)
T 3fkq_A 150 SPCGGVGTSTVAAACAIAHAN-----------MGKKVFYLN 179 (373)
T ss_dssp CSSTTSSHHHHHHHHHHHHHH-----------HTCCEEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHh-----------CCCCEEEEE
Confidence 358899999877665544432 366677664
No 470
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=47.02 E-value=13 Score=35.08 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
..++++|+.|||||.++-.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4589999999999976533
No 471
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=46.98 E-value=5.8 Score=38.81 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFV 306 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~l 306 (671)
..++++|++|||||..+-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999997643
No 472
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=46.94 E-value=1.4e+02 Score=27.67 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=14.7
Q ss_pred EEEcCCCChHHHHHHHHHHHH
Q 038133 292 IGIAETGSGKTAAFVLPMLTY 312 (671)
Q Consensus 292 ii~a~TGsGKT~~~ll~~l~~ 312 (671)
+..+.-|.|||.+++..+...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~l 25 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYL 25 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHH
Confidence 455788999998766655443
No 473
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=46.75 E-value=16 Score=31.91 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=32.3
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCC-eEEEecCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKLGY-RVTTLHGGKS 549 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~~~-~v~~lhg~~~ 549 (671)
...++||||.+-..+...+..|...|+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 367899999998888899999999999 5889999864
No 474
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=46.48 E-value=20 Score=31.65 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=31.1
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCC-eEEEecCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKLGY-RVTTLHGGKS 549 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~~~-~v~~lhg~~~ 549 (671)
...++||||.+=..+...+..|...|+ ++..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 367899999997778899999999999 5999999975
No 475
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=46.41 E-value=53 Score=39.46 Aligned_cols=65 Identities=22% Similarity=0.109 Sum_probs=51.3
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhhcCCCcEEEec-----ccccccC-CCCCCcEE
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT-----DVAGRGI-DIPDVAHV 586 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT-----~~~~~Gi-DIp~v~~V 586 (671)
.++++||.++++.-+...++.|....-.+..++|+.+ .++..+|+|+| +.+..|- .+.++.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 4778999999999999999999887668999999887 34678999999 3444443 35677777
Q ss_pred EE
Q 038133 587 IN 588 (671)
Q Consensus 587 I~ 588 (671)
|.
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 476
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=45.84 E-value=9.8 Score=36.86 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCChHHHH
Q 038133 287 QQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~ 304 (671)
.|.-+.++||+|||||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999963
No 477
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=45.67 E-value=15 Score=32.41 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=31.6
Q ss_pred CCcEEEEecCh--hhHHHHHHHHHHcCCeEEEecCCCC
Q 038133 514 DKTAIVFVNTK--KNADMVAKNLDKLGYRVTTLHGGKS 549 (671)
Q Consensus 514 ~~~iIVF~~~~--~~~~~l~~~L~~~~~~v~~lhg~~~ 549 (671)
..++||||.+- ..+..++..|...|+++..+.||+.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 67899999987 5788999999999999999999864
No 478
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=45.62 E-value=13 Score=35.89 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll 307 (671)
...+++.|+.|||||.++-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34689999999999976543
No 479
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=45.28 E-value=11 Score=34.90 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCChHHHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll 307 (671)
.|+.++++|+.|+|||..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLA 35 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 456799999999999976544
No 480
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=45.28 E-value=14 Score=35.20 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.+++.|+.|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999976433
No 481
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=45.23 E-value=9.4 Score=36.03 Aligned_cols=16 Identities=31% Similarity=0.239 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 038133 290 DVIGIAETGSGKTAAF 305 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ 305 (671)
-+.+.|+.|||||.++
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999754
No 482
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=45.14 E-value=2.6e+02 Score=28.24 Aligned_cols=105 Identities=12% Similarity=0.010 Sum_probs=52.9
Q ss_pred HHhCCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHHHhhcCcEEEEEEC
Q 038133 284 LGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVG 363 (671)
Q Consensus 284 ~il~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~~~~~~i~v~~~~g 363 (671)
.++...+.++. ++| |.+..+ ++..+. ..|..+++..|+-.-.. ..+...+...|+.+..+-.
T Consensus 63 ~~~~~~~~i~~---~sG-t~a~~~-~~~~~~----------~~g~~vl~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~ 124 (386)
T 1cs1_A 63 ELEGGAGAVLT---NTG-MSAIHL-VTTVFL----------KPGDLLVAPHDCYGGSY---RLFDSLAKRGCYRVLFVDQ 124 (386)
T ss_dssp HHHTCSEEEEE---SSH-HHHHHH-HHHHHC----------CTTCEEEEETTCCHHHH---HHHHHHHTTTSCEEEEECT
T ss_pred HHhCCCcEEEe---CCH-HHHHHH-HHHHHh----------CCCCEEEEecCCcHhHH---HHHHHHHHhcCCEEEEeCC
Confidence 33434455554 678 754433 333332 14667787777654322 2344445566777765533
Q ss_pred CCchHHHHHHHhcCCeEE-EEcch----H------HHHHHhhcccccCCccEEEEcccchh
Q 038133 364 GQSIEEQGFRIRQGCEVV-IATPG----R------LIDCLERRYAVLNQCNYVVLDEADRM 413 (671)
Q Consensus 364 g~~~~~~~~~l~~~~~Ii-I~Tp~----~------L~~~l~~~~~~l~~~~~vViDEah~~ 413 (671)
.+.......+.....+| +++|. . +.++..+. =-+||+||+|..
T Consensus 125 -~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~ 178 (386)
T 1cs1_A 125 -GDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREV------GAVSVVDNTFLS 178 (386)
T ss_dssp -TCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTC
T ss_pred -CCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCcc
Confidence 23343333444444444 44442 2 22222221 137999999964
No 483
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=45.06 E-value=11 Score=40.74 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 038133 289 RDVIGIAETGSGKTAAF 305 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ 305 (671)
+.++++||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999764
No 484
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=45.03 E-value=11 Score=35.87 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCChHHHH
Q 038133 287 QQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~ 304 (671)
.|.-+.++||.|||||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999964
No 485
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=45.01 E-value=29 Score=34.08 Aligned_cols=51 Identities=10% Similarity=0.004 Sum_probs=30.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKF 350 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~~~~~k~ 350 (671)
|..+++.+++|+|||..++..+...+. .|-+++|++-. +-..++...+..+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~-----------~Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLK-----------SDNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHH-----------TTCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHH-----------CCCcEEEEEEe-CCHHHHHHHHHHc
Confidence 456788878888888444444444442 57788887754 3344444445443
No 486
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=44.88 E-value=9.7 Score=35.61 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.+.++|++|||||.+.-.
T Consensus 14 iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477889999999976533
No 487
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=44.35 E-value=19 Score=45.84 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=33.8
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHHhcCCCCCcccccCCCeEEEEecchhhHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE 344 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ll~~l~~l~~~~~~~~~~~~~g~~vLil~Ptr~La~Qi~ 344 (671)
.+++++++|++|+|||..++..+...+. .|..++|+. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k-----------~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR-----------EGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT-----------TTCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEE-ccccHHHHH
Confidence 5678999999999999877776666653 577777775 445555554
No 488
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=44.26 E-value=47 Score=36.44 Aligned_cols=19 Identities=21% Similarity=0.018 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 038133 289 RDVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 289 rd~ii~a~TGsGKT~~~ll 307 (671)
+-+.|+|+.|.|||..+..
T Consensus 148 ~~v~I~G~~GiGKTtLa~~ 166 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAE 166 (591)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4588999999999976543
No 489
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=44.25 E-value=12 Score=38.22 Aligned_cols=23 Identities=26% Similarity=0.040 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLPML 310 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~~l 310 (671)
++.+++.||+|+|||..++..+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34579999999999976555443
No 490
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=43.93 E-value=60 Score=31.00 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHHhCCCcEEEEecChhhHHHHHHHHHHcCCe-EEEecCCCCHHHHHHHHHHhhcCCCcEEEecc
Q 038133 499 SEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYR-VTTLHGGKSQEQREISLEGFRTKRYNVLVATD 572 (671)
Q Consensus 499 ~~k~~~L~~ll~~~~~~~iIVF~~~~~~~~~l~~~L~~~~~~-v~~lhg~~~~~~R~~~l~~F~~g~~~VLVaT~ 572 (671)
..|......++... +.++||+|++..-+..+.+.+...+.. +..++|+.. ...+|+|+|.
T Consensus 119 ~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 119 SGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp TTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 44554444444443 688999999999999999999888888 889998764 2567899883
No 491
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=43.81 E-value=11 Score=36.19 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCChHHHH
Q 038133 287 QQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~ 304 (671)
.|.-+.++||+|||||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999964
No 492
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=43.74 E-value=11 Score=37.52 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCChHHHH
Q 038133 287 QQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~ 304 (671)
.|.-+.++||+|||||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999974
No 493
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=43.43 E-value=17 Score=31.32 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=32.0
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCe-EEEecCCCC
Q 038133 513 GDKTAIVFVNTKKNADMVAKNLDKLGYR-VTTLHGGKS 549 (671)
Q Consensus 513 ~~~~iIVF~~~~~~~~~l~~~L~~~~~~-v~~lhg~~~ 549 (671)
.+.++||||.+-..+..++..|...|+. +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3678999999988888999999999985 888999864
No 494
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=43.18 E-value=12 Score=37.24 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.9
Q ss_pred cEEEEcCCCChHHHHHHH
Q 038133 290 DVIGIAETGSGKTAAFVL 307 (671)
Q Consensus 290 d~ii~a~TGsGKT~~~ll 307 (671)
.+++.||+|+|||..+-.
T Consensus 40 ~~ll~G~~G~GKt~la~~ 57 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIA 57 (319)
T ss_dssp CEEEESSSSSSHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHH
Confidence 599999999999976433
No 495
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=43.10 E-value=11 Score=36.01 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCChHHHH
Q 038133 287 QQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~ 304 (671)
.|.-+.++||.|||||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999963
No 496
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=42.99 E-value=11 Score=36.63 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCChHHHH
Q 038133 287 QQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~ 304 (671)
.|.-+.++||+|||||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999974
No 497
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=42.99 E-value=13 Score=41.00 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCChHHHHH
Q 038133 287 QQRDVIGIAETGSGKTAAF 305 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~~ 305 (671)
.+..++++||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667999999999999754
No 498
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=42.81 E-value=16 Score=41.96 Aligned_cols=21 Identities=33% Similarity=0.283 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCChHHHHHHHH
Q 038133 288 QRDVIGIAETGSGKTAAFVLP 308 (671)
Q Consensus 288 ~rd~ii~a~TGsGKT~~~ll~ 308 (671)
..+++++||+|+|||.++-..
T Consensus 201 ~~~vLL~G~pGtGKT~la~~l 221 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGL 221 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHH
Confidence 457999999999999765443
No 499
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=42.80 E-value=12 Score=36.94 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCChHHHH
Q 038133 287 QQRDVIGIAETGSGKTAA 304 (671)
Q Consensus 287 ~~rd~ii~a~TGsGKT~~ 304 (671)
.|.-+.++||+|||||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999974
No 500
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=42.74 E-value=18 Score=40.88 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHhhcCcccccCCCCCCCCCcccCCC-CHHHHHHHHHcCCC--CC--cHHHHHHHHHHh---CCCcEEEEcCCCChHHH
Q 038133 232 IFREDFNISYKGSKIPRPMRNWAEGKL-TPELLRAVERVGYK--NP--SPIQMAAIPLGL---QQRDVIGIAETGSGKTA 303 (671)
Q Consensus 232 ~f~~~~~i~~~g~~ip~pi~~f~e~~l-~~~i~~~i~~~g~~--~p--~~~Q~~ai~~il---~~rd~ii~a~TGsGKT~ 303 (671)
+|..+.-+++.|. +--.+..|..+++ +++.+......... .| +.+=..|+..++ .++.+|+.|+.|+|||.
T Consensus 31 Ry~~~~IYTy~G~-iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe 109 (697)
T 1lkx_A 31 RHKSDNIYTYIGD-VVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTE 109 (697)
T ss_dssp HHHTTCCEEESSS-CEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHH
T ss_pred HHhcCCcEEeeCC-eEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchh
Confidence 3444444555554 4444455555443 45555554332221 22 233445555555 34569999999999997
Q ss_pred HHHHHHHHHHh
Q 038133 304 AFVLPMLTYIS 314 (671)
Q Consensus 304 ~~ll~~l~~l~ 314 (671)
+.=. ++.|+.
T Consensus 110 ~tK~-i~~yla 119 (697)
T 1lkx_A 110 ASKK-IMQFLT 119 (697)
T ss_dssp HHHH-HHHHHH
T ss_pred hHHH-HHHHHH
Confidence 6533 344443
Done!