Citrus Sinensis ID: 038133
Local Sequence Feature Prediction
| Prediction and Method | Result |
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Function Prediction
Annotation transfered from Closely Related SWISS-PROT Entries 
| Annotation | Function Description | Confidence Level | Reference Protein |
| DEAD-box ATP-dependent RNA helicase 21 | ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing. | confident | P93008 |
| DEAD-box ATP-dependent RNA helicase 21 | ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing. | confident | Q53RK8 |
| Pre-mRNA-splicing ATP-dependent RNA helicase prp28 | ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing. | probable | Q9Y7T7 |
Prediction of Enzyme Commission Number
| EC Number | Description | Confidence Level | |||||||||
| 3.-.-.- | Hydrolases. | probable | |||||||||
| 3.6.-.- | Acting on acid anhydrides. | probable | |||||||||
| 3.6.4.- | Acting on acid anhydrides; involved in cellular and subcellular movement. | probable | |||||||||
| 3.6.4.13 | RNA helicase. | probable |
Spatial Structural Prediction
Structural Models Based on Templates
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Template: 2DB3, chain A Confidence level:very confident Coverage over the Query: 236-432,448-645 View the alignment between query and template View the model in PyMOL |
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Template: 2FSF, chain A Confidence level:confident Coverage over the Query: 443-624 View the alignment between query and template View the model in PyMOL |
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Template: 2ZUO, chain A Confidence level:probable Coverage over the Query: 19-99 View the alignment between query and template View the model in PyMOL |
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Template: 3LVG, chain D Confidence level:probable Coverage over the Query: 29-104 View the alignment between query and template View the model in PyMOL |