Query 038138
Match_columns 91
No_of_seqs 136 out of 675
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 07:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13947 GUB_WAK_bind: Wall-as 99.9 4.9E-23 1.1E-27 135.9 7.4 75 12-86 1-79 (106)
2 PF08261 Carcinustatin: Carcin 39.2 14 0.0003 14.6 0.4 6 25-30 3-8 (8)
3 PF05953 Allatostatin: Allatos 19.3 56 0.0012 13.9 0.6 7 25-31 5-11 (11)
4 KOG2189 Vacuolar H+-ATPase V0 16.6 59 0.0013 29.5 0.6 8 25-32 512-519 (829)
5 PF12985 DUF3869: Domain of un 15.8 61 0.0013 22.2 0.4 15 77-91 63-77 (104)
6 PF09396 Thrombin_light: Throm 15.6 48 0.001 19.9 -0.1 17 27-43 14-31 (49)
7 PF09044 Kp4: Kp4; InterPro: 14.4 65 0.0014 22.7 0.3 18 13-31 96-113 (128)
8 PRK08222 hydrogenase 4 subunit 13.4 83 0.0018 22.6 0.6 11 20-30 12-22 (181)
9 PF13349 DUF4097: Domain of un 10.3 3.7E+02 0.0079 17.8 3.0 33 59-91 87-127 (166)
10 PF10988 DUF2807: Protein of u 8.4 5E+02 0.011 17.5 3.1 15 59-73 35-49 (181)
No 1
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=99.89 E-value=4.9e-23 Score=135.86 Aligned_cols=75 Identities=32% Similarity=0.625 Sum_probs=67.0
Q ss_pred CCCCCCCcCCeeeccCCCCCCCCCCCCCCEEecCCCCCCceeeecC----cceEEEeceEEEEEcccchhhhcccccce
Q 038138 12 KDLCQYDCGNVTISYPFGIGDGCYFDKSFEVICDYSSGSPKAFLAN----INNLQVLDGHVYTVYDSYTSFYVYMIRPI 86 (91)
Q Consensus 12 ~~~C~~~CG~v~IpYPFGi~~gC~~~~~F~l~C~~~~~~p~l~l~~----~~~Isv~~g~~~v~~~~~~scy~~~~~~~ 86 (91)
+++||++||||+||||||++++|+++++|+|+|++++++|++++.+ +++|++.+++++|...++..||+......
T Consensus 1 ~~~C~~~CGnv~IpYPFgi~~~C~~~~~F~L~C~~~~~~~~l~l~~~~~~V~~I~~~~~~i~v~~~~~~~~~~~~~~~~ 79 (106)
T PF13947_consen 1 KPGCPSSCGNVSIPYPFGIGPGCGRDPGFELTCNNNTSPPKLLLSSGNYEVLSISYENGTIRVSDPISSNCYSSSSSNS 79 (106)
T ss_pred CCCCCCccCCEeecCCCccCCCCCCCCCcEEECCCCCCCceeEecCCcEEEEEEecCCCEEEEEeccccceecCCCCcc
Confidence 3789999999999999999999999889999999887778988754 38999999999999999999998876654
No 2
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=39.25 E-value=14 Score=14.56 Aligned_cols=6 Identities=50% Similarity=1.387 Sum_probs=4.1
Q ss_pred ccCCCC
Q 038138 25 SYPFGI 30 (91)
Q Consensus 25 pYPFGi 30 (91)
||-||.
T Consensus 3 py~fgl 8 (8)
T PF08261_consen 3 PYSFGL 8 (8)
T ss_pred cccccC
Confidence 677774
No 3
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=19.29 E-value=56 Score=13.93 Aligned_cols=7 Identities=57% Similarity=1.417 Sum_probs=4.8
Q ss_pred ccCCCCC
Q 038138 25 SYPFGIG 31 (91)
Q Consensus 25 pYPFGi~ 31 (91)
.|-||+|
T Consensus 5 ~Y~FGLG 11 (11)
T PF05953_consen 5 MYSFGLG 11 (11)
T ss_pred ccccCcC
Confidence 3778875
No 4
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=16.64 E-value=59 Score=29.46 Aligned_cols=8 Identities=50% Similarity=1.327 Sum_probs=7.2
Q ss_pred ccCCCCCC
Q 038138 25 SYPFGIGD 32 (91)
Q Consensus 25 pYPFGi~~ 32 (91)
|||||+.+
T Consensus 512 pYPfGvDP 519 (829)
T KOG2189|consen 512 PYPFGVDP 519 (829)
T ss_pred CCCCcCCh
Confidence 89999976
No 5
>PF12985 DUF3869: Domain of unknown function (DUF3869); InterPro: IPR024620 This functionally uncharacterised domain is found in bacterial sequences, including the N-terminal region of a putative pore-forming toxin (YP_001301288.1) from Bacteroides vulgatus ATCC 8482.; PDB: 3G3L_A 3KOG_A.
Probab=15.78 E-value=61 Score=22.18 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=13.2
Q ss_pred hhhcccccceEEecC
Q 038138 77 SFYVYMIRPIRVYIP 91 (91)
Q Consensus 77 scy~~~~~~~~~~~~ 91 (91)
+.|++++...+|++|
T Consensus 63 s~~~y~~~~~tV~vp 77 (104)
T PF12985_consen 63 SKDGYMTGSVTVNVP 77 (104)
T ss_dssp EECTCEEEEEEEEE-
T ss_pred EccCCeeeEEEEEeh
Confidence 799999999999987
No 6
>PF09396 Thrombin_light: Thrombin light chain; InterPro: IPR018992 Thrombin is a Na+-activated, allosteric serine protease that functions in blood homeostasis, inflammation and wound healing []. Thrombin (or coagulation factor II) is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, and (in complex with thrombomodulin) protein C []. Sodium binding is the major driving force behind the procoagulant, prothrombotic and signaling functions of the enzyme, but is dispensable for cleavage of the anticoagulant protein C []. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. This domain corresponds to the light chain of thrombin. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0007596 blood coagulation, 0005576 extracellular region; PDB: 3HKI_D 2OCV_A 3EDX_A 3HK6_C 2PV9_A 2PUX_A 3HK3_A 1HRT_L 1TOC_G 1ETT_L ....
Probab=15.59 E-value=48 Score=19.95 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=10.8
Q ss_pred CCCCCC-CCCCCCCCEEe
Q 038138 27 PFGIGD-GCYFDKSFEVI 43 (91)
Q Consensus 27 PFGi~~-gC~~~~~F~l~ 43 (91)
-||-|+ .|+.+|-|+-.
T Consensus 14 TFG~GEadCG~RPlFEkk 31 (49)
T PF09396_consen 14 TFGSGEADCGLRPLFEKK 31 (49)
T ss_dssp HHTSSGTTTT--TTTGGG
T ss_pred cccCcccccCcchhhhhh
Confidence 478764 79998888743
No 7
>PF09044 Kp4: Kp4; InterPro: IPR015131 Killer toxins are polypeptides secreted by some fungal species that kill sensitive cells of the same or related species, often functioning by creating pores in target cell membranes. The fungal killer toxin KP4 from the corn smut fungus, Ustilago maydis (Smut fungus), is encoded by a resident symbiotic double-stranded RNA virus, Ustilago maydis P4 virus (UmV4), within fungal cells. Unlike most killer toxins, KP4 is a single polypeptide []. KP4 inhibits voltage-gated calcium channels in mammalian cells, which in turn inhibits cell growth and division by blocking calcium import. KP4 adopts a structure consisting of a two-layer alpha/beta sandwich with a left-handed crossover []. ; PDB: 1KPT_B.
Probab=14.41 E-value=65 Score=22.75 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=9.1
Q ss_pred CCCCCCcCCeeeccCCCCC
Q 038138 13 DLCQYDCGNVTISYPFGIG 31 (91)
Q Consensus 13 ~~C~~~CG~v~IpYPFGi~ 31 (91)
.+| ++||.|++-||++..
T Consensus 96 HGC-~~CGSvP~~y~~~gN 113 (128)
T PF09044_consen 96 HGC-KVCGSVPYFYTQGGN 113 (128)
T ss_dssp HT--SS-EEEE---SSTT-
T ss_pred cCC-CCCCCCCcccCCCCC
Confidence 356 489999999998763
No 8
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=13.35 E-value=83 Score=22.61 Aligned_cols=11 Identities=45% Similarity=1.005 Sum_probs=9.7
Q ss_pred CCeeeccCCCC
Q 038138 20 GNVTISYPFGI 30 (91)
Q Consensus 20 G~v~IpYPFGi 30 (91)
|.++++|||+-
T Consensus 12 g~~T~~yP~~~ 22 (181)
T PRK08222 12 GTATVKYPFAP 22 (181)
T ss_pred CCccccCCCcc
Confidence 88999999983
No 9
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=10.31 E-value=3.7e+02 Score=17.77 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=19.9
Q ss_pred ceEEEeceEEEEEcccch-------hhhc-ccccceEEecC
Q 038138 59 NNLQVLDGHVYTVYDSYT-------SFYV-YMIRPIRVYIP 91 (91)
Q Consensus 59 ~~Isv~~g~~~v~~~~~~-------scy~-~~~~~~~~~~~ 91 (91)
..++..++++.|...... +.++ .....|+||+|
T Consensus 87 ~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP 127 (166)
T PF13349_consen 87 PEISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLP 127 (166)
T ss_pred EEEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEEC
Confidence 356777777777655221 1122 35678888888
No 10
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=8.44 E-value=5e+02 Score=17.48 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.3
Q ss_pred ceEEEeceEEEEEcc
Q 038138 59 NNLQVLDGHVYTVYD 73 (91)
Q Consensus 59 ~~Isv~~g~~~v~~~ 73 (91)
+++++.+|++++.+.
T Consensus 35 i~~~v~~g~L~I~~~ 49 (181)
T PF10988_consen 35 IKVEVKDGTLKISYK 49 (181)
T ss_dssp EEEEEETTEEEEEE-
T ss_pred EEEEEECCEEEEEEC
Confidence 688889999999877
Done!