Query 038138
Match_columns 91
No_of_seqs 136 out of 675
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rm2_L Thrombin light chain; s 46.3 6.4 0.00022 21.4 0.7 15 28-42 2-17 (36)
2 1etr_L Epsilon-thrombin; serin 22.2 39 0.0013 19.5 1.4 20 25-44 12-32 (49)
3 3pet_A Putative adhesin; right 17.0 1.3E+02 0.0044 20.7 3.5 17 59-75 56-72 (221)
4 3bei_A Prothrombin; serine pro 15.9 42 0.0014 18.9 0.5 18 27-44 9-27 (44)
5 3jx8_A Putative lipoprotein; s 15.3 1.3E+02 0.0046 20.9 3.2 33 59-91 57-94 (250)
6 3b9f_L Prothrombin; michaelis 14.7 39 0.0013 19.5 0.2 19 26-44 13-32 (49)
7 3lyc_A Putative pectinase; str 13.1 1.6E+02 0.0053 20.4 3.1 33 59-91 51-84 (241)
8 3knd_B Targeting protein for X 10.9 84 0.0029 19.7 0.9 14 20-33 1-14 (81)
9 2ljo_A Non-specific lipid-tran 10.0 94 0.0032 19.2 0.9 20 16-36 71-90 (93)
10 3ljy_A Putative adhesin; struc 9.7 2E+02 0.0069 19.9 2.7 29 59-90 56-84 (243)
No 1
>3rm2_L Thrombin light chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_L* 1a3e_L* 1a46_L* 1a4w_L* 1a5g_L* 1a61_L* 1abi_L* 1abj_L* 1ad8_L* 1ae8_L* 1afe_L* 1a3b_L* 1ai8_L* 1aix_L* 1awf_L* 1awh_A* 1ay6_L* 1b5g_L* 1b7x_A 1ba8_A* ...
Probab=46.31 E-value=6.4 Score=21.43 Aligned_cols=15 Identities=40% Similarity=0.747 Sum_probs=9.1
Q ss_pred CCCC-CCCCCCCCCEE
Q 038138 28 FGIG-DGCYFDKSFEV 42 (91)
Q Consensus 28 FGi~-~gC~~~~~F~l 42 (91)
||.| .+|+.+|.|+-
T Consensus 2 fG~ge~~CG~rPlfEk 17 (36)
T 3rm2_L 2 FGSGEADCGLRPLFEK 17 (36)
T ss_dssp ----CTTTTCCTTTGG
T ss_pred CcccccccccCchhhh
Confidence 8886 49999998874
No 2
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=22.16 E-value=39 Score=19.48 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=14.0
Q ss_pred ccCCCCCC-CCCCCCCCEEec
Q 038138 25 SYPFGIGD-GCYFDKSFEVIC 44 (91)
Q Consensus 25 pYPFGi~~-gC~~~~~F~l~C 44 (91)
|=+||-|+ .|+.+|-|+..-
T Consensus 12 pktFG~GE~dCG~RPlFEk~~ 32 (49)
T 1etr_L 12 EKTFGAGEADCGLRPLFEKKQ 32 (49)
T ss_dssp --CCBSCCTTTTCCTTTGGGT
T ss_pred CcCCCCcccccccchhHhhhc
Confidence 44789875 799988887543
No 3
>3pet_A Putative adhesin; right-handed beta-helix, structural genomics, joint center F structural genomics, JCSG; HET: PG4; 2.07A {Bacteroides fragilis nctc 9343}
Probab=17.00 E-value=1.3e+02 Score=20.73 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.1
Q ss_pred ceEEEeceEEEEEcccc
Q 038138 59 NNLQVLDGHVYTVYDSY 75 (91)
Q Consensus 59 ~~Isv~~g~~~v~~~~~ 75 (91)
+.+++.+|++++.+...
T Consensus 56 i~~~v~~g~L~I~~~~~ 72 (221)
T 3pet_A 56 IQVAVKDNTLFLSIDKS 72 (221)
T ss_dssp EEEEEETTEEEEEECTT
T ss_pred EEEEEECCEEEEEEcCC
Confidence 68889999999987754
No 4
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=15.92 E-value=42 Score=18.94 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=13.4
Q ss_pred CCCCCC-CCCCCCCCEEec
Q 038138 27 PFGIGD-GCYFDKSFEVIC 44 (91)
Q Consensus 27 PFGi~~-gC~~~~~F~l~C 44 (91)
.||-|+ .|+.+|-|+..-
T Consensus 9 tFG~GE~dCG~RPlFEk~~ 27 (44)
T 3bei_A 9 TFGSGEADCGLRPLFEKKS 27 (44)
T ss_dssp HHCSCSTTTTCCTTTGGGT
T ss_pred cccCcccccccchhHHHhc
Confidence 478875 799988887543
No 5
>3jx8_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.16A {Parabacteroides distasonis atcc 8503}
Probab=15.28 E-value=1.3e+02 Score=20.95 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=22.2
Q ss_pred ceEEEeceEEEEEcccch-hh----hcccccceEEecC
Q 038138 59 NNLQVLDGHVYTVYDSYT-SF----YVYMIRPIRVYIP 91 (91)
Q Consensus 59 ~~Isv~~g~~~v~~~~~~-sc----y~~~~~~~~~~~~ 91 (91)
+.+++.+|++.+.+.... .. |+-....++||||
T Consensus 57 i~~~v~~g~L~I~~~~~~~~~~~~~~~~~~~~~~v~V~ 94 (250)
T 3jx8_A 57 LVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSN 94 (250)
T ss_dssp EEEEEETTEEEEEECBCTTTTTSCBCEEECSCEEEEEE
T ss_pred EEEEEECCEEEEEEcCCccccccceeecCCcEEEEEEE
Confidence 688999999999877652 11 2323457888774
No 6
>3b9f_L Prothrombin; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 1tb6_L* 2b5t_A* 1jou_A* 3gis_A 1jmo_L*
Probab=14.69 E-value=39 Score=19.49 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=13.9
Q ss_pred cCCCCCC-CCCCCCCCEEec
Q 038138 26 YPFGIGD-GCYFDKSFEVIC 44 (91)
Q Consensus 26 YPFGi~~-gC~~~~~F~l~C 44 (91)
=+||-|+ .|+.+|-|+..=
T Consensus 13 ktFG~GE~dCG~RPlFEk~~ 32 (49)
T 3b9f_L 13 RTFGSGEADCGLRPLFEKKS 32 (49)
T ss_dssp HHHCSCSTTTTCCTTTGGGT
T ss_pred cCCCCcccccccchhHhHhc
Confidence 3688875 799988887543
No 7
>3lyc_A Putative pectinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipoprotein; HET: MSE; 2.30A {Parabacteroides distasonis}
Probab=13.11 E-value=1.6e+02 Score=20.41 Aligned_cols=33 Identities=6% Similarity=-0.111 Sum_probs=21.3
Q ss_pred ceEEEeceEEEEEcccchh-hhcccccceEEecC
Q 038138 59 NNLQVLDGHVYTVYDSYTS-FYVYMIRPIRVYIP 91 (91)
Q Consensus 59 ~~Isv~~g~~~v~~~~~~s-cy~~~~~~~~~~~~ 91 (91)
+.+++.+|++++.+..... -.+--...++||||
T Consensus 51 v~~~v~~g~L~I~~~~~~~~~~~~~~~~i~v~V~ 84 (241)
T 3lyc_A 51 YEFNVENHKLKIRPKKEFRKHTNFRPTEFMVTAN 84 (241)
T ss_dssp EEEEEETTEEEEEECGGGCSCSCCCCSCEEEEEE
T ss_pred EEEEEECCEEEEEEcCCcccceeecCceEEEEEE
Confidence 5888999999998765411 01111247888875
No 8
>3knd_B Targeting protein for XKLP2; mitosis, importin, transport, protein transport; 2.15A {Xenopus laevis}
Probab=10.88 E-value=84 Score=19.68 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=11.6
Q ss_pred CCeeeccCCCCCCC
Q 038138 20 GNVTISYPFGIGDG 33 (91)
Q Consensus 20 G~v~IpYPFGi~~g 33 (91)
|+++||=||-.+.|
T Consensus 1 ~g~T~pkPFnls~g 14 (81)
T 3knd_B 1 GGHTVPKPFNLSKG 14 (81)
T ss_pred CCCccccccccCCC
Confidence 67899999988765
No 9
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=9.98 E-value=94 Score=19.24 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=14.5
Q ss_pred CCCcCCeeeccCCCCCCCCCC
Q 038138 16 QYDCGNVTISYPFGIGDGCYF 36 (91)
Q Consensus 16 ~~~CG~v~IpYPFGi~~gC~~ 36 (91)
|.+|| |++|||+.-.-.|..
T Consensus 71 P~~Cg-V~~p~~Is~~~dC~~ 90 (93)
T 2ljo_A 71 PGKCG-VNIPYKISTTTNCNT 90 (93)
T ss_dssp HHHHT-CCCSSCCSTTCCGGG
T ss_pred hHhcC-CCCCCCCCCCCCCCC
Confidence 55776 788999877667754
No 10
>3ljy_A Putative adhesin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipoprotein; HET: PGE; 2.41A {Parabacteroides distasonis}
Probab=9.68 E-value=2e+02 Score=19.95 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=19.7
Q ss_pred ceEEEeceEEEEEcccchhhhcccccceEEec
Q 038138 59 NNLQVLDGHVYTVYDSYTSFYVYMIRPIRVYI 90 (91)
Q Consensus 59 ~~Isv~~g~~~v~~~~~~scy~~~~~~~~~~~ 90 (91)
+.+++.+|++.+.+...... . ...++|||
T Consensus 56 i~~~v~~g~L~I~~~~~~~~-~--~~~~~v~V 84 (243)
T 3ljy_A 56 VNIEVKDRVLTIAFKGAKVD-H--FTKFIVKT 84 (243)
T ss_dssp EEEEEETTEEEEEECSSEEE-E--CSCEEEEE
T ss_pred EEEEEECCEEEEEEcCCcee-C--CceEEEEE
Confidence 68889999999987764321 1 24566665
Done!