Query 038138
Match_columns 91
No_of_seqs 136 out of 675
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 13:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038138.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038138hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 18.6 10 0.00073 22.1 -0.3 19 16-35 72-90 (93)
2 d1g3pa1 b.37.1.1 (A:1-65) N-te 13.2 42 0.0031 18.9 1.5 23 68-91 43-65 (65)
3 d1cvra1 b.1.18.12 (A:351-432) 11.0 1.1E+02 0.008 17.5 3.0 36 38-73 17-54 (82)
4 d3c7bb3 d.134.1.1 (B:123-196,B 10.1 35 0.0025 21.6 0.5 9 13-21 54-62 (179)
5 d2v4jb3 d.134.1.1 (B:136-208,B 9.3 39 0.0028 21.2 0.5 10 13-22 52-61 (177)
6 d2akja3 d.134.1.1 (A:431-556) 7.9 50 0.0036 19.5 0.5 10 13-22 50-59 (126)
7 d1x38a2 c.23.11.1 (A:389-602) 7.8 54 0.0039 20.6 0.7 7 25-31 202-208 (214)
8 d2vv5a2 d.58.43.1 (A:180-280) 7.2 50 0.0037 18.1 0.3 7 21-27 86-92 (101)
9 d1zj8a3 d.134.1.1 (A:407-555) 6.9 60 0.0043 19.3 0.5 10 13-22 55-64 (149)
10 d1m1ha1 b.114.1.1 (A:51-131) N 6.6 1.1E+02 0.008 17.5 1.6 13 59-71 34-46 (81)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=18.58 E-value=10 Score=22.15 Aligned_cols=19 Identities=32% Similarity=0.782 Sum_probs=12.9
Q ss_pred CCCcCCeeeccCCCCCCCCC
Q 038138 16 QYDCGNVTISYPFGIGDGCY 35 (91)
Q Consensus 16 ~~~CG~v~IpYPFGi~~gC~ 35 (91)
|.+|| |++|||+.-.-.|.
T Consensus 72 P~~C~-v~l~~pis~~~dCs 90 (93)
T d1fk5a_ 72 PSKCG-VSIPYTISTSTDCS 90 (93)
T ss_dssp HHHTT-CCCSSCCSTTCCGG
T ss_pred hHhcC-CCCCCCCCCCCCCC
Confidence 56787 77888876554554
No 2
>d1g3pa1 b.37.1.1 (A:1-65) N-terminal domains of the minor coat protein g3p {Bacteriophage M13 [TaxId: 10870]}
Probab=13.24 E-value=42 Score=18.87 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEcccchhhhcccccceEEecC
Q 038138 68 VYTVYDSYTSFYVYMIRPIRVYIP 91 (91)
Q Consensus 68 ~~v~~~~~~scy~~~~~~~~~~~~ 91 (91)
+.|.++.-++||.+ -.|++.+||
T Consensus 43 V~V~~~d~t~c~~~-W~Pvg~a~p 65 (65)
T d1g3pa1 43 VVVCTGDETQCYGT-WVPIGLAIP 65 (65)
T ss_dssp EEEECTTSSEEEEE-EEEEEECCC
T ss_pred EEEEeCCCCEEEee-EEeeeecCC
Confidence 44889999999988 789999887
No 3
>d1cvra1 b.1.18.12 (A:351-432) Gingipain R (RgpB), C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=11.05 E-value=1.1e+02 Score=17.49 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=20.2
Q ss_pred CCCEEecCCCCCCceeee-cCc-ceEEEeceEEEEEcc
Q 038138 38 KSFEVICDYSSGSPKAFL-ANI-NNLQVLDGHVYTVYD 73 (91)
Q Consensus 38 ~~F~l~C~~~~~~p~l~l-~~~-~~Isv~~g~~~v~~~ 73 (91)
..|+++|+.++.-..+.- |+. ..--|.+|++.+..+
T Consensus 17 ~s~~v~cdyngaiat~s~~g~m~gsaiv~~g~a~i~l~ 54 (82)
T d1cvra1 17 QTFEVACDYNGAIATLSDDGDMVGTAIVKDGKAIIKLN 54 (82)
T ss_dssp SEEEEEESSTTCEEEEEETTEEEEEEECBTTEEEEECS
T ss_pred ceEEEEeccCceEEEEecCCcEEeEEEEeCCeEEEEcc
Confidence 469999998764222211 111 233456777776554
No 4
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.11 E-value=35 Score=21.64 Aligned_cols=9 Identities=33% Similarity=0.848 Sum_probs=7.7
Q ss_pred CCCCCCcCC
Q 038138 13 DLCQYDCGN 21 (91)
Q Consensus 13 ~~C~~~CG~ 21 (91)
.+||+.||.
T Consensus 54 SGCpn~C~~ 62 (179)
T d3c7bb3 54 ACCANMCGA 62 (179)
T ss_dssp ESSTTCCSS
T ss_pred eccCCcCCC
Confidence 789999974
No 5
>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=9.26 E-value=39 Score=21.19 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=8.2
Q ss_pred CCCCCCcCCe
Q 038138 13 DLCQYDCGNV 22 (91)
Q Consensus 13 ~~C~~~CG~v 22 (91)
.+||+.|+..
T Consensus 52 SGCpn~C~~~ 61 (177)
T d2v4jb3 52 ACCINMCGAV 61 (177)
T ss_dssp ESSTTCCSSG
T ss_pred cCCCCccccc
Confidence 7899999854
No 6
>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=7.91 E-value=50 Score=19.48 Aligned_cols=10 Identities=40% Similarity=0.939 Sum_probs=8.1
Q ss_pred CCCCCCcCCe
Q 038138 13 DLCQYDCGNV 22 (91)
Q Consensus 13 ~~C~~~CG~v 22 (91)
.+||+.|+.-
T Consensus 50 SGCpn~C~~~ 59 (126)
T d2akja3 50 TGCPNSCGQV 59 (126)
T ss_dssp ESSTTCTTCG
T ss_pred eCCcchhhhh
Confidence 7899999753
No 7
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=7.83 E-value=54 Score=20.61 Aligned_cols=7 Identities=29% Similarity=0.790 Sum_probs=5.5
Q ss_pred ccCCCCC
Q 038138 25 SYPFGIG 31 (91)
Q Consensus 25 pYPFGi~ 31 (91)
-||||.|
T Consensus 202 lypFG~G 208 (214)
T d1x38a2 202 LFRLGYG 208 (214)
T ss_dssp SBCTTCC
T ss_pred cccCCCC
Confidence 4899886
No 8
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.17 E-value=50 Score=18.14 Aligned_cols=7 Identities=29% Similarity=1.037 Sum_probs=3.7
Q ss_pred CeeeccC
Q 038138 21 NVTISYP 27 (91)
Q Consensus 21 ~v~IpYP 27 (91)
+|+||||
T Consensus 86 gI~ip~P 92 (101)
T d2vv5a2 86 GISFPYP 92 (101)
T ss_dssp TCCCCCC
T ss_pred CCcCCCC
Confidence 4555555
No 9
>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.92 E-value=60 Score=19.30 Aligned_cols=10 Identities=20% Similarity=0.787 Sum_probs=8.1
Q ss_pred CCCCCCcCCe
Q 038138 13 DLCQYDCGNV 22 (91)
Q Consensus 13 ~~C~~~CG~v 22 (91)
.+||+.|+..
T Consensus 55 SGCpn~C~~~ 64 (149)
T d1zj8a3 55 NGCPNSCARI 64 (149)
T ss_dssp ESSTTCTTCG
T ss_pred EcCCcccccc
Confidence 7899999753
No 10
>d1m1ha1 b.114.1.1 (A:51-131) N-utilization substance G protein NusG, insert domain {Aquifex aeolicus [TaxId: 63363]}
Probab=6.61 E-value=1.1e+02 Score=17.46 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=11.5
Q ss_pred ceEEEeceEEEEE
Q 038138 59 NNLQVLDGHVYTV 71 (91)
Q Consensus 59 ~~Isv~~g~~~v~ 71 (91)
+.+.+++|++||.
T Consensus 34 t~f~iedg~vrvl 46 (81)
T d1m1ha1 34 TTFRIENGEVKVV 46 (81)
T ss_dssp EEEEECSSCEEEE
T ss_pred EEEEEcCCeEEEE
Confidence 7888999999986
Done!