BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038140
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
pdb|2Q7D|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
Length = 346
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 26/150 (17%)
Query: 20 LSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGEN 79
L+ P I K +VA GT +SH MAIVF E + P VVQ ++NH++ L+K +V+GE+
Sbjct: 161 LTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPP--CVVQNFINHNAVLYKVFVVGES 217
Query: 80 IFHAVKKSTPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDL---- 135
+ S N E I F+S N + +S S +LD
Sbjct: 218 YTVVQRPSLKNFSAGTSDRE-----SIFFNS--------HNVSKPESSSVLTELDKIEGV 264
Query: 136 ------ELIKDAAKWLAKTLDLTIFGFDVV 159
E+I++ ++ L + L +++FG D++
Sbjct: 265 FERPSDEVIRELSRALRQALGVSLFGIDII 294
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
pdb|2QB5|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
Length = 347
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 26/150 (17%)
Query: 20 LSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGEN 79
L+ P I K +VA GT +SH MAIVF E + P VVQ ++NH++ L+K +V+GE+
Sbjct: 162 LTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPP--CVVQNFINHNAVLYKVFVVGES 218
Query: 80 IFHAVKKSTPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDL---- 135
+ S N E I F+S N + +S S +LD
Sbjct: 219 YTVVQRPSLKNFSAGTSDRE-----SIFFNS--------HNVSKPESSSVLTELDKIEGV 265
Query: 136 ------ELIKDAAKWLAKTLDLTIFGFDVV 159
E+I++ ++ L + L +++FG D++
Sbjct: 266 FERPSDEVIRELSRALRQALGVSLFGIDII 295
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp
pdb|1Z2O|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+ADPINS(1,3,4,6)P4
pdb|1Z2P|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+AMP- PcpINS(1,3,4)P3
Length = 324
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 13 QRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFK 72
Q L QL LP IVKP+ A GT ++H M IV E D++ P + Q Y+NH++ + K
Sbjct: 127 QLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIH--FPCLCQHYINHNNKIVK 184
Query: 73 FYVLGENIFHAVKKSTPNSGILMKSYERNGLRPILFDS 110
+ +G + + S PN R G++ + F++
Sbjct: 185 VFCIGNTLKWQTRTSLPN-------VHRCGIKSVDFNN 215
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase
Length = 328
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 26/150 (17%)
Query: 20 LSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGEN 79
L+ P I K +VA GT +SH AIVF E + P VVQ ++NH++ L+K +V+GE+
Sbjct: 151 LTFPFICKTRVAHGT-NSHEXAIVFNQEGLNAIQPP--CVVQNFINHNAVLYKVFVVGES 207
Query: 80 IFHAVKKSTPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDL---- 135
+ S N E I F+S N + +S S +LD
Sbjct: 208 YTVVQRPSLKNFSAGTSDRE-----SIFFNS--------HNVSKPESSSVLTELDKIEGV 254
Query: 136 ------ELIKDAAKWLAKTLDLTIFGFDVV 159
E+I++ ++ L + L +++FG D++
Sbjct: 255 FERPSDEVIRELSRALRQALGVSLFGIDII 284
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 31 ACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHS----STLFKF-----YVLGENIF 81
+ GT DSH+ + +G + F+ L+ +P + E+ S T+ F Y + +
Sbjct: 501 SWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPEDYQIESEVM 560
Query: 82 HAVKKSTPNSGILMKSYERNGLRPILFD 109
+A +KS+ + ++ ER+ + P F+
Sbjct: 561 NAHQKSSIGNSLIRTYMERDYIIPESFE 588
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 31 ACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHS----STLFKF-----YVLGENIF 81
+ GT DSH+ + +G + F+ L+ +P + E+ S T+ F Y + +
Sbjct: 499 SWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPEDYQIESEVM 558
Query: 82 HAVKKSTPNSGILMKSYERNGLRPILFD 109
+A +KS+ + ++ ER+ + P F+
Sbjct: 559 NAHQKSSIGNSLIRTYMERDYIIPESFE 586
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 31 ACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHS----STLFKF-----YVLGENIF 81
+ GT DSH+ + +G + F+ L+ +P + E+ S T+ F Y + +
Sbjct: 499 SWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPEDYQIESEVM 558
Query: 82 HAVKKSTPNSGILMKSYERNGLRPILFD 109
+A +KS+ + ++ ER+ + P F+
Sbjct: 559 NAHQKSSIGNSLIRTYMERDYIIPESFE 586
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 31 ACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHS----STLFKF-----YVLGENIF 81
+ GT DSH+ + +G + F+ L+ +P + ++ S T+ F Y + +
Sbjct: 499 SWGTGDSHNWGVWYGKKPFESLDTDLPRFMSQFGFQSFPEMKTIAAFAAPEDYQIESEVM 558
Query: 82 HAVKKSTPNSGILMKSYERNGLRPILFD 109
+A +KS+ + ++ ER+ + P F+
Sbjct: 559 NAHQKSSIGNSLIRTYMERDYIIPESFE 586
>pdb|2COD|A Chain A, Solution Structure Of The N-Terminal Ph Domain Of Arap2
Protein From Human
Length = 115
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 75 VLGENIFHAVKKSTPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDS 126
V G+N F V + K ERN IL ++LKS + +++Q SG S
Sbjct: 62 VQGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQSLTSQSQASGPS 113
>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase
pdb|3M6I|B Chain B, L-Arabinitol 4-Dehydrogenase
Length = 363
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 26 VKPQVACGTADSHSMAIVFGTEDFKDLNVP-IPAVVQEYVNH 66
++PQV C + G E L+ P +P +++ YVNH
Sbjct: 102 IEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNH 143
>pdb|1XJS|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein
Iscu From Bacillus Subtilis, With Zinc Bound At The
Active Site. Northeast Structural Genomics Consortium
Target Sr17
pdb|2AZH|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein
Sufu From Bacillus Subtilis, With Zinc Bound At The
Active Site. Northeast Structural Genomics Consortium
Target Sr17
Length = 147
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 93 ILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDA 141
++M Y+ + +L DS+ +D N GD I T+ LD ++++DA
Sbjct: 14 VIMDHYKNPRNKGVLNDSI---VVDMNNPTCGDRIRLTMKLDGDIVEDA 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,742,580
Number of Sequences: 62578
Number of extensions: 183320
Number of successful extensions: 497
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 15
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)