Query 038140
Match_columns 159
No_of_seqs 108 out of 176
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 5.2E-51 1.1E-55 345.2 14.5 150 3-159 121-271 (307)
2 PLN02941 inositol-tetrakisphos 100.0 1E-36 2.2E-41 260.2 13.1 144 11-159 142-286 (328)
3 PF08443 RimK: RimK-like ATP-g 99.4 2.3E-13 4.9E-18 107.3 7.4 122 7-159 26-154 (190)
4 TIGR02144 LysX_arch Lysine bio 98.9 2.7E-09 5.9E-14 87.5 8.0 110 18-159 119-238 (280)
5 TIGR00768 rimK_fam alpha-L-glu 98.9 3E-09 6.5E-14 86.4 7.6 110 19-159 121-240 (277)
6 PRK10446 ribosomal protein S6 98.8 2.1E-08 4.6E-13 84.0 9.5 108 21-159 135-250 (300)
7 COG0189 RimK Glutathione synth 98.8 1.3E-08 2.8E-13 87.1 7.9 123 5-159 140-274 (318)
8 TIGR01380 glut_syn glutathione 98.7 1.3E-07 2.7E-12 80.3 10.1 76 7-89 142-228 (312)
9 PRK12458 glutathione synthetas 98.7 1.6E-07 3.4E-12 80.8 10.1 108 22-159 163-287 (338)
10 PRK14016 cyanophycin synthetas 98.5 3.5E-07 7.7E-12 85.7 9.3 67 19-90 247-319 (727)
11 PRK05246 glutathione synthetas 98.4 1.4E-06 3E-11 73.9 9.7 74 11-90 147-230 (316)
12 TIGR02068 cya_phycin_syn cyano 98.3 3.1E-06 6.7E-11 80.8 10.2 67 19-90 246-318 (864)
13 PRK01372 ddl D-alanine--D-alan 98.3 1.9E-06 4E-11 71.7 7.4 119 18-159 130-254 (304)
14 TIGR01205 D_ala_D_alaTIGR D-al 98.2 3.8E-06 8.2E-11 70.1 7.7 119 18-159 143-269 (315)
15 PRK02471 bifunctional glutamat 98.2 1.1E-05 2.3E-10 76.3 11.2 68 20-92 523-598 (752)
16 TIGR03103 trio_acet_GNAT GNAT- 98.2 9.3E-06 2E-10 74.0 9.6 63 23-90 333-401 (547)
17 PRK12767 carbamoyl phosphate s 98.0 1.4E-05 3.1E-10 66.8 7.0 105 18-159 145-255 (326)
18 PRK14569 D-alanyl-alanine synt 98.0 2.4E-05 5.2E-10 65.6 8.2 116 18-159 127-249 (296)
19 PF13535 ATP-grasp_4: ATP-gras 98.0 9.3E-06 2E-10 61.7 4.3 114 19-159 37-163 (184)
20 PRK14571 D-alanyl-alanine synt 97.9 5.5E-05 1.2E-09 63.2 8.6 56 18-78 122-182 (299)
21 PRK06849 hypothetical protein; 97.9 0.00019 4.1E-09 62.1 11.6 105 20-159 151-260 (389)
22 PF02955 GSH-S_ATP: Prokaryoti 97.8 2.2E-05 4.8E-10 62.0 4.6 122 7-159 20-151 (173)
23 TIGR02291 rimK_rel_E_lig alpha 97.8 0.00075 1.6E-08 58.0 13.7 132 21-159 74-254 (317)
24 TIGR01435 glu_cys_lig_rel glut 97.8 0.00025 5.4E-09 67.0 11.0 67 21-92 511-585 (737)
25 PRK14572 D-alanyl-alanine synt 97.7 0.00019 4.1E-09 61.6 8.0 55 19-78 169-228 (347)
26 PRK01966 ddl D-alanyl-alanine 97.7 0.0001 2.2E-09 62.8 6.3 56 18-78 159-219 (333)
27 PF07478 Dala_Dala_lig_C: D-al 97.6 9.1E-05 2E-09 59.4 5.2 120 17-158 29-158 (203)
28 PRK14570 D-alanyl-alanine synt 97.6 0.00055 1.2E-08 59.5 9.9 57 18-79 168-229 (364)
29 PRK14568 vanB D-alanine--D-lac 97.5 0.00026 5.6E-09 60.6 7.0 57 18-79 162-223 (343)
30 PF02655 ATP-grasp_3: ATP-gras 97.4 0.0004 8.7E-09 53.4 5.6 109 19-159 29-143 (161)
31 TIGR01142 purT phosphoribosylg 97.1 0.00081 1.7E-08 57.6 5.2 55 18-76 133-196 (380)
32 PRK07206 hypothetical protein; 97.1 0.0026 5.6E-08 55.2 8.2 109 21-158 146-272 (416)
33 PRK06019 phosphoribosylaminoim 97.1 0.0019 4.1E-08 55.8 7.2 111 19-158 133-250 (372)
34 TIGR01161 purK phosphoribosyla 97.1 0.0028 6E-08 54.1 8.1 55 19-76 131-188 (352)
35 TIGR01369 CPSaseII_lrg carbamo 97.0 0.0038 8.3E-08 61.1 9.1 62 18-82 701-770 (1050)
36 PRK12815 carB carbamoyl phosph 97.0 0.0043 9.3E-08 60.8 9.3 56 18-78 702-762 (1068)
37 PRK02186 argininosuccinate lya 96.9 0.0035 7.6E-08 60.2 8.3 113 18-158 139-261 (887)
38 PRK08462 biotin carboxylase; V 96.9 0.0037 8E-08 55.1 7.6 57 18-78 151-218 (445)
39 KOG1057 Arp2/3 complex-interac 96.9 0.0011 2.4E-08 62.7 4.3 111 20-159 177-308 (1018)
40 PRK05294 carB carbamoyl phosph 96.8 0.0049 1.1E-07 60.4 8.5 61 18-81 701-769 (1066)
41 PRK06111 acetyl-CoA carboxylas 96.7 0.0058 1.2E-07 53.6 7.3 57 18-78 149-216 (450)
42 TIGR01235 pyruv_carbox pyruvat 96.5 0.008 1.7E-07 59.5 7.4 111 18-158 149-276 (1143)
43 PRK05586 biotin carboxylase; V 96.5 0.0017 3.6E-08 57.5 2.4 57 18-78 149-216 (447)
44 PRK08654 pyruvate carboxylase 96.3 0.011 2.4E-07 53.5 6.7 58 18-79 149-217 (499)
45 PRK12833 acetyl-CoA carboxylas 96.2 0.022 4.7E-07 50.9 7.7 58 18-79 152-220 (467)
46 PRK14573 bifunctional D-alanyl 96.1 0.016 3.4E-07 55.1 6.8 58 18-79 607-669 (809)
47 PRK07178 pyruvate carboxylase 96.0 0.023 4.9E-07 50.8 7.0 57 18-78 148-215 (472)
48 COG1181 DdlA D-alanine-D-alani 96.0 0.051 1.1E-06 46.7 8.7 127 16-159 137-269 (317)
49 PRK09288 purT phosphoribosylgl 95.9 0.0056 1.2E-07 52.7 2.7 56 18-77 146-210 (395)
50 PRK12999 pyruvate carboxylase; 95.7 0.02 4.3E-07 56.8 5.7 57 18-78 153-220 (1146)
51 PLN02735 carbamoyl-phosphate s 95.6 0.024 5.3E-07 55.9 6.3 57 18-78 734-797 (1102)
52 PRK13790 phosphoribosylamine-- 95.6 0.065 1.4E-06 46.6 8.2 58 19-79 100-164 (379)
53 PRK08591 acetyl-CoA carboxylas 95.5 0.0083 1.8E-07 52.8 2.4 57 18-78 149-216 (451)
54 PRK06524 biotin carboxylase-li 95.4 0.0099 2.2E-07 54.0 2.3 58 18-78 178-239 (493)
55 TIGR00514 accC acetyl-CoA carb 95.3 0.011 2.4E-07 52.2 2.5 57 18-78 149-216 (449)
56 PRK05294 carB carbamoyl phosph 95.2 0.039 8.4E-07 54.2 5.8 115 18-158 160-286 (1066)
57 PRK08463 acetyl-CoA carboxylas 94.9 0.024 5.2E-07 50.8 3.5 57 18-78 149-216 (478)
58 PF02750 Synapsin_C: Synapsin, 94.5 0.12 2.7E-06 41.9 6.1 109 19-159 48-162 (203)
59 PRK00885 phosphoribosylamine-- 94.4 0.036 7.8E-07 48.5 3.1 55 19-78 135-200 (420)
60 PF02786 CPSase_L_D2: Carbamoy 93.9 0.053 1.1E-06 43.9 3.0 57 18-78 35-102 (211)
61 TIGR00877 purD phosphoribosyla 93.5 0.11 2.3E-06 45.4 4.3 53 19-76 137-200 (423)
62 TIGR01369 CPSaseII_lrg carbamo 93.1 0.19 4.2E-06 49.4 5.9 46 18-66 159-211 (1050)
63 PF15632 ATPgrasp_Ter: ATP-gra 92.7 1.7 3.7E-05 37.7 10.5 100 18-158 139-264 (329)
64 PF03133 TTL: Tubulin-tyrosine 92.7 0.15 3.2E-06 42.4 3.9 53 22-77 66-126 (292)
65 PRK06395 phosphoribosylamine-- 92.6 1 2.2E-05 40.1 9.2 61 19-82 139-208 (435)
66 PLN02735 carbamoyl-phosphate s 92.3 0.59 1.3E-05 46.4 8.0 56 19-78 177-240 (1102)
67 PRK12815 carB carbamoyl phosph 92.2 0.41 8.8E-06 47.3 6.8 57 18-78 160-223 (1068)
68 PLN02948 phosphoribosylaminoim 92.2 0.091 2E-06 48.5 2.2 47 18-66 153-204 (577)
69 PRK13277 5-formaminoimidazole- 92.1 0.24 5.1E-06 43.6 4.6 58 18-76 149-218 (366)
70 COG0439 AccC Biotin carboxylas 92.0 0.2 4.3E-06 45.2 4.1 64 10-80 143-218 (449)
71 TIGR02712 urea_carbox urea car 91.3 0.22 4.7E-06 49.8 3.9 57 18-78 147-214 (1201)
72 PF02222 ATP-grasp: ATP-grasp 91.0 0.077 1.7E-06 41.7 0.4 49 19-69 26-77 (172)
73 COG3919 Predicted ATP-grasp en 90.6 0.11 2.3E-06 45.2 0.9 57 18-74 144-209 (415)
74 PRK13789 phosphoribosylamine-- 90.3 0.19 4.1E-06 44.6 2.2 55 19-78 141-206 (426)
75 COG1821 Predicted ATP-utilizin 89.6 0.82 1.8E-05 38.9 5.3 46 24-81 141-186 (307)
76 PRK13278 purP 5-formaminoimida 89.5 0.7 1.5E-05 40.4 5.1 54 19-75 147-210 (358)
77 PLN02257 phosphoribosylamine-- 86.0 1.1 2.5E-05 39.8 4.4 45 19-66 135-190 (434)
78 PF14305 ATPgrasp_TupA: TupA-l 81.3 29 0.00062 28.5 10.5 119 13-149 48-195 (239)
79 COG2232 Predicted ATP-dependen 78.4 5.7 0.00012 35.0 5.7 47 22-78 150-196 (389)
80 PRK00696 sucC succinyl-CoA syn 76.8 2 4.4E-05 37.4 2.5 49 19-67 37-105 (388)
81 KOG2158 Tubulin-tyrosine ligas 75.4 1.2 2.6E-05 40.7 0.8 51 20-76 225-282 (565)
82 PF14397 ATPgrasp_ST: Sugar-tr 75.4 48 0.001 27.8 12.8 133 20-159 72-243 (285)
83 PRK05784 phosphoribosylamine-- 71.2 11 0.00023 34.3 5.8 50 22-76 145-215 (486)
84 TIGR01016 sucCoAbeta succinyl- 70.3 3.2 6.9E-05 36.1 2.2 60 19-79 37-116 (386)
85 COG0027 PurT Formate-dependent 68.6 2.3 5.1E-05 37.2 1.0 56 8-67 134-201 (394)
86 COG0458 CarB Carbamoylphosphat 66.0 6.6 0.00014 35.1 3.3 57 18-78 147-210 (400)
87 PF08860 DUF1827: Domain of un 51.9 7.4 0.00016 27.8 1.0 29 59-87 14-42 (91)
88 PHA02117 glutathionylspermidin 47.6 57 0.0012 29.1 6.1 62 24-88 310-380 (397)
89 KOG2156 Tubulin-tyrosine ligas 43.1 15 0.00032 34.4 1.7 48 24-77 308-361 (662)
90 COG1759 5-formaminoimidazole-4 38.6 28 0.0006 30.6 2.6 39 10-51 127-177 (361)
91 PF13591 MerR_2: MerR HTH fami 37.3 9.4 0.0002 26.3 -0.4 20 140-159 46-65 (84)
92 COG0026 PurK Phosphoribosylami 36.6 46 0.00099 29.6 3.7 55 10-69 125-184 (375)
93 TIGR00129 fdhD_narQ formate de 33.7 39 0.00085 27.8 2.7 18 139-156 203-220 (237)
94 PF04046 PSP: PSP; InterPro: 31.7 21 0.00046 22.5 0.6 13 140-152 4-16 (48)
95 PF02634 FdhD-NarQ: FdhD/NarQ 31.5 43 0.00092 27.3 2.6 17 140-156 204-220 (236)
96 KOG0238 3-Methylcrotonyl-CoA c 30.6 30 0.00065 32.4 1.6 73 3-79 127-213 (670)
97 PF12058 DUF3539: Protein of u 30.0 44 0.00095 23.8 2.0 22 62-83 4-27 (88)
98 PRK00724 formate dehydrogenase 29.6 49 0.0011 27.6 2.7 40 37-78 39-79 (263)
99 PF06228 ChuX_HutX: Haem utili 29.2 50 0.0011 25.2 2.4 15 62-76 107-122 (141)
100 smart00581 PSP proline-rich do 28.7 23 0.0005 22.9 0.4 13 140-152 8-20 (54)
101 PRK10265 chaperone-modulator p 28.6 15 0.00033 26.2 -0.5 22 138-159 52-73 (101)
102 PF01922 SRP19: SRP19 protein; 26.8 67 0.0014 22.7 2.6 18 136-154 29-46 (95)
103 KOG0370 Multifunctional pyrimi 26.1 61 0.0013 32.7 2.9 47 18-67 1065-1118(1435)
104 CHL00134 petF ferredoxin; Vali 25.3 57 0.0012 22.9 2.0 28 6-34 22-49 (99)
105 PF08816 Ivy: Inhibitor of ver 24.3 64 0.0014 24.0 2.2 20 25-48 50-69 (118)
106 PF15158 DUF4579: Domain of un 23.9 2.3E+02 0.0051 22.8 5.4 25 133-157 150-174 (186)
107 COG1038 PycA Pyruvate carboxyl 22.5 36 0.00078 33.6 0.6 65 18-86 155-234 (1149)
108 COG1526 FdhD Uncharacterized p 20.9 90 0.002 26.4 2.7 18 139-156 232-249 (266)
109 PF10057 DUF2294: Uncharacteri 20.6 1.2E+02 0.0027 21.9 3.1 32 59-90 19-50 (118)
110 PF14403 CP_ATPgrasp_2: Circul 20.5 49 0.0011 30.0 1.0 42 23-68 340-387 (445)
111 PF15103 G0-G1_switch_2: G0/G1 20.3 45 0.00099 24.3 0.6 14 67-80 20-33 (102)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=5.2e-51 Score=345.20 Aligned_cols=150 Identities=41% Similarity=0.594 Sum_probs=104.1
Q ss_pred cccCCCCChhHHHhhcCCCCceEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeeecCCCeEEEEEEECCeEEE
Q 038140 3 VIDFKDPGLPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGENIFH 82 (159)
Q Consensus 3 ~~~~~~~~~~~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefInH~g~l~KVyViGd~v~~ 82 (159)
|.+. .+++.+.++++||+||+||||++||||++||+|+|||+++||++|++ |||+||||||||+|||||||||++++
T Consensus 121 i~~~-~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L~~--P~VlQeFVNHggvLfKVyVvGd~v~~ 197 (307)
T PF05770_consen 121 INSD-AESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDLKP--PCVLQEFVNHGGVLFKVYVVGDKVFV 197 (307)
T ss_dssp ESSS-HCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT--S--SEEEEE----TTEEEEEEEETTEEEE
T ss_pred EcCC-HHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHHHHhhcCC--CEEEEEeecCCCEEEEEEEecCEEEE
Confidence 4443 78999999999999999999999999999999999999999999986 79999999999999999999999999
Q ss_pred EEecCCCCCchhhhhhccCCccceEeccCCCCCccccccCCCC-CccccCCCCHHHHHHHHHHHHHHhCCcEeeeeeC
Q 038140 83 AVKKSTPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGD-SISCTVDLDLELIKDAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 83 ~~R~Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~ia~~Lr~~lGL~LfGfDvI 159 (159)
++||||||++.++. .. ..+.+.|++.++++.+.. ....+ .....+.++.++++++|++||++|||+|||||||
T Consensus 198 v~R~SLpn~~~~~~--~~-~~~~f~~~~vs~~~~~~~-~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI 271 (307)
T PF05770_consen 198 VKRPSLPNVSSGKL--DR-EEIFFDFHQVSKLESSSD-LSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVI 271 (307)
T ss_dssp EEEE------SSS---TC-GGCCCEGGGTCSTTTSSG-GGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEE
T ss_pred EECCCCCCCCcccc--cc-cccceeccccCCccccCc-hhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEE
Confidence 99999999975322 11 113444555444433332 22222 1234567788999999999999999999999997
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=1e-36 Score=260.24 Aligned_cols=144 Identities=28% Similarity=0.473 Sum_probs=118.1
Q ss_pred hhHHHhhcCCCCceEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCC
Q 038140 11 LPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPN 90 (159)
Q Consensus 11 ~~~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn 90 (159)
+...++.++++||+||||++||||+.||.|++|+++++|..|.+ ||++||||||+|++||||||||++.+++|+|+||
T Consensus 142 l~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l~~--p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n 219 (328)
T PLN02941 142 IPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEP--PLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPD 219 (328)
T ss_pred HHHHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHhcCC--cEEEEEecCCCCEEEEEEEECCEEEEEEecCCcc
Confidence 55557789999999999999999999999999999999999886 7999999999999999999999999999999999
Q ss_pred CchhhhhhccCCccceEeccCCCCCccccccCCC-CCccccCCCCHHHHHHHHHHHHHHhCCcEeeeeeC
Q 038140 91 SGILMKSYERNGLRPILFDSLKSLPIDTENQNSG-DSISCTVDLDLELIKDAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~ia~~Lr~~lGL~LfGfDvI 159 (159)
+..+++.... +.+.|++.++++.+....... ......+.++.+.+++||.++|+++|++|||||||
T Consensus 220 ~~~~~~n~~~---G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI 286 (328)
T PLN02941 220 VSEEELSSAE---GVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMI 286 (328)
T ss_pred cccccccccc---cccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEE
Confidence 8743222222 578899988776654433211 00112345667889999999999999999999997
No 3
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.45 E-value=2.3e-13 Score=107.35 Aligned_cols=122 Identities=20% Similarity=0.370 Sum_probs=64.7
Q ss_pred CCCChhHHHhhcCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCC-eEEEEEEECCeE
Q 038140 7 KDPGLPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSS-TLFKFYVLGENI 80 (159)
Q Consensus 7 ~~~~~~~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g-~l~KVyViGd~v 80 (159)
+..++.+.+.+.+ .||+|.||..++ .+..+.++.+.+.+..+ ....|+++|+||++.+ ..++|||||+++
T Consensus 26 ~~~~~~~~~~~~~-~~p~ViKp~~g~---~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~v 101 (190)
T PF08443_consen 26 SPEEAKEFIEELG-GFPVVIKPLRGS---SGRGVFLINSPDELESLLDAFKRLENPILVQEFIPKDGGRDLRVYVIGGKV 101 (190)
T ss_dssp SHHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH-----TTT-EEEE----SS---EEEEEETTEE
T ss_pred CHHHHHHHHHHhc-CCCEEEeeCCCC---CCCEEEEecCHHHHHHHHHHHHhccCcceEeccccCCCCcEEEEEEECCEE
Confidence 3334455555555 999999998766 68999999999877764 1135789999999985 999999999998
Q ss_pred EEEEecCCCCC-chhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCcEeeeeeC
Q 038140 81 FHAVKKSTPNS-GILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 81 ~~~~R~Slpn~-~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~LfGfDvI 159 (159)
....|++-++. +. .+.+.+ +.+. ...+ .+.+.++|.++.+++|+++.|+|++
T Consensus 102 v~a~~r~~~~~d~r-~n~~~g---~~~~----------------------~~~l-~~e~~~~a~~~~~~lgl~~~giDi~ 154 (190)
T PF08443_consen 102 VGAYRRSSPEGDFR-TNLSRG---GKVE----------------------PYDL-PEEIKELALKAARALGLDFAGIDIL 154 (190)
T ss_dssp EEEEE----------------------E----------------------E-----HHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred EEEEEEecCcccch-hhhccC---ceEE----------------------EecC-CHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 87655543331 11 111111 1110 0122 3568899999999999999999974
No 4
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.95 E-value=2.7e-09 Score=87.51 Aligned_cols=110 Identities=17% Similarity=0.286 Sum_probs=75.9
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-------C--CCCceeEeeeecCCCeEEEEEEECCeEE-EEEecC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------N--VPIPAVVQEYVNHSSTLFKFYVLGENIF-HAVKKS 87 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~--~p~p~V~QefInH~g~l~KVyViGd~v~-~~~R~S 87 (159)
..+.||+|+||..++ .+..+.++.+.+.+..+ . ...++++||||++.+.-++++|+|+++. .+.|.+
T Consensus 119 ~~~~~P~vvKP~~g~---~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~ 195 (280)
T TIGR02144 119 EALGYPVVLKPVIGS---WGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS 195 (280)
T ss_pred HHcCCCEEEEECcCC---CcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC
Confidence 357899999997765 46789999998876542 1 1237999999998789999999999865 455655
Q ss_pred CCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCcEeeeeeC
Q 038140 88 TPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 88 lpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~LfGfDvI 159 (159)
.++.. +...+ +.. ....++ +.++++|.++.+.+|+.+.|+|++
T Consensus 196 -~~~~~--~~~~g---~~~----------------------~~~~~~-~~~~~~a~~~~~~lg~~~~~vD~~ 238 (280)
T TIGR02144 196 -NHWRT--NTARG---GKA----------------------EPCPLD-EEVEELAVKAAEAVGGGVVAIDIF 238 (280)
T ss_pred -Cchhh--hhhcC---Cce----------------------eccCCC-HHHHHHHHHHHHHhCCCeEEEEEE
Confidence 22221 00001 000 001122 457899999999999999999985
No 5
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.93 E-value=3e-09 Score=86.42 Aligned_cols=110 Identities=21% Similarity=0.315 Sum_probs=74.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-------C-CCCceeEeeeecCCC-eEEEEEEECCeEEEEEecCCC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------N-VPIPAVVQEYVNHSS-TLFKFYVLGENIFHAVKKSTP 89 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~-~p~p~V~QefInH~g-~l~KVyViGd~v~~~~R~Slp 89 (159)
.+.||+|+||..++| +..+.++.+++++..+ . ...++++||||++.+ .-++|+++|+++....++..+
T Consensus 121 ~~~~p~vvKP~~g~~---g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~ 197 (277)
T TIGR00768 121 EIGFPVVLKPVFGSW---GRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITS 197 (277)
T ss_pred hcCCCEEEEECcCCC---CCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCC
Confidence 467999999988764 6788899998777532 1 013699999999874 899999999998654433222
Q ss_pred -CCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCcEeeeeeC
Q 038140 90 -NSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 90 -n~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~LfGfDvI 159 (159)
++.. +...+ +... .... .+.++++|..+.+.+|+..+|+|++
T Consensus 198 ~~~~~--n~~~g---~~~~----------------------~~~l-~~~~~~~a~~~~~~l~~~~~~vD~~ 240 (277)
T TIGR00768 198 GHWRT--NLARG---GKAE----------------------PCPL-TEEIEELAIKAAKALGLDVVGIDLL 240 (277)
T ss_pred Cchhh--hhhcC---Ceee----------------------ecCC-CHHHHHHHHHHHHHhCCCeEEEEEE
Confidence 2210 11111 1000 0011 2468899999999999999999985
No 6
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.83 E-value=2.1e-08 Score=83.95 Aligned_cols=108 Identities=14% Similarity=0.220 Sum_probs=73.2
Q ss_pred CCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecC-CCeEEEEEEECCeEE-EEEecCCC-CCc
Q 038140 21 SLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNH-SSTLFKFYVLGENIF-HAVKKSTP-NSG 92 (159)
Q Consensus 21 ~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH-~g~l~KVyViGd~v~-~~~R~Slp-n~~ 92 (159)
.||+|+||..+. .|..+.++.+++.+..+ ....++++||||++ .|.-++|+|+|+++. +++|.+-. ++.
T Consensus 135 ~~P~VvKP~~g~---~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~~~~~ 211 (300)
T PRK10446 135 GAPLVVKLVEGT---QGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFR 211 (300)
T ss_pred CCCEEEEECCCC---CcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCCCchh
Confidence 799999997764 57888889887665542 11236899999987 499999999998854 44554322 221
Q ss_pred hhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCcEeeeeeC
Q 038140 93 ILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 93 ~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~LfGfDvI 159 (159)
. +...+ +... ...+ .+.++++|.+..+.+|+.+.|+|++
T Consensus 212 ~--n~~~g---~~~~----------------------~~~l-~~~~~~~a~~a~~alg~~~~gvD~~ 250 (300)
T PRK10446 212 S--NLHRG---GAAS----------------------VASI-TPQEREIAIKAARTMALDVAGVDIL 250 (300)
T ss_pred h--eeccC---Ceec----------------------cCCC-CHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 0 11111 1000 0112 3558899999999999999999985
No 7
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.3e-08 Score=87.12 Aligned_cols=123 Identities=16% Similarity=0.190 Sum_probs=83.1
Q ss_pred cCCCCChhHHHhhcCCCCceEeecccccCCccceeEEEEeCCC-cCcCC----CCC--CceeEeeeecCCCeEEEEEEEC
Q 038140 5 DFKDPGLPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTE-DFKDL----NVP--IPAVVQEYVNHSSTLFKFYVLG 77 (159)
Q Consensus 5 ~~~~~~~~~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~-~L~~l----~~p--~p~V~QefInH~g~l~KVyViG 77 (159)
++++.++.+. .+..+.||+|+||+.+. -+..++++-+.+ .|..+ ..+ .++++||||+-...-.|.+++|
T Consensus 140 ~~~~~~~~~~-~~~~~g~pvVlKp~~Gs---~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~ 215 (318)
T COG0189 140 TRDPDEAAEF-VAEHLGFPVVLKPLDGS---GGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVG 215 (318)
T ss_pred EcCHHHHHHH-HHHhcCCCEEEeeCCCC---CccceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEe
Confidence 3444333333 44578899999997777 578899999998 65553 112 2599999999999999999988
Q ss_pred CeEEEEEe-----cCCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc
Q 038140 78 ENIFHAVK-----KSTPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT 152 (159)
Q Consensus 78 d~v~~~~R-----~Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~ 152 (159)
|...+..+ ++-.++.. |.+.+ +. ...... .+..+++|....+.+|+.
T Consensus 216 ~~~~~~~y~~~R~~~~~~~R~--N~a~G---g~----------------------~e~~~l-~~e~~elA~kaa~~lGl~ 267 (318)
T COG0189 216 GGEVVAIYALARIPASGDFRS--NLARG---GR----------------------AEPCEL-TEEEEELAVKAAPALGLG 267 (318)
T ss_pred CCEEeEEeeeccccCCCCcee--ecccc---cc----------------------ccccCC-CHHHHHHHHHHHHHhCCe
Confidence 88766643 23223221 12222 11 001122 367889999999999999
Q ss_pred EeeeeeC
Q 038140 153 IFGFDVV 159 (159)
Q Consensus 153 LfGfDvI 159 (159)
+.|+|||
T Consensus 268 ~~GVDii 274 (318)
T COG0189 268 LVGVDII 274 (318)
T ss_pred EEEEEEE
Confidence 9999986
No 8
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.70 E-value=1.3e-07 Score=80.28 Aligned_cols=76 Identities=9% Similarity=0.145 Sum_probs=50.5
Q ss_pred CCCChhHHHhhcCCCCceEeecccccCCccceeEEEEeCC-CcCc-------CCCCCCceeEeeeecC-CCeEEEEEEEC
Q 038140 7 KDPGLPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGT-EDFK-------DLNVPIPAVVQEYVNH-SSTLFKFYVLG 77 (159)
Q Consensus 7 ~~~~~~~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~-~~L~-------~l~~p~p~V~QefInH-~g~l~KVyViG 77 (159)
+..++.+.+.+.| |+|+||+.+. .+..++.+... ..+. .+. ..|+++|+||+. .+..++|+|||
T Consensus 142 ~~~~~~~~~~~~g---~vVvKPl~G~---~G~gv~~v~~~~~~~~~~~~~~~~~~-~~~~~vQ~yI~~~~~~D~Rv~vv~ 214 (312)
T TIGR01380 142 DKAEIRAFLAEHG---DIVLKPLDGM---GGEGIFRLDPGDPNFNSILETMTQRG-REPVMAQRYLPEIKEGDKRILLID 214 (312)
T ss_pred CHHHHHHHHHHcC---CEEEEECCCC---CCceEEEEcCCCccHHHHHHHHHhcc-CCcEEEEeccccccCCCEEEEEEC
Confidence 3334444455444 9999998876 46777777643 2221 111 247999999985 35799999999
Q ss_pred CeEE--EEEecCCC
Q 038140 78 ENIF--HAVKKSTP 89 (159)
Q Consensus 78 d~v~--~~~R~Slp 89 (159)
+++. ++.|.+.+
T Consensus 215 g~vv~~ai~R~~~~ 228 (312)
T TIGR01380 215 GEPIGAAVARIPAG 228 (312)
T ss_pred CeEEEEEEEecCCC
Confidence 9974 45666544
No 9
>PRK12458 glutathione synthetase; Provisional
Probab=98.67 E-value=1.6e-07 Score=80.76 Aligned_cols=108 Identities=12% Similarity=0.135 Sum_probs=67.1
Q ss_pred CceEeecccccCCccceeEEEEeCCCc--CcCC----CCCCceeEeeeecC-CCeEEEEEEECCeEE-------EEEecC
Q 038140 22 LPCIVKPQVACGTADSHSMAIVFGTED--FKDL----NVPIPAVVQEYVNH-SSTLFKFYVLGENIF-------HAVKKS 87 (159)
Q Consensus 22 fP~I~Kp~~A~Gs~~sH~M~lv~~~~~--L~~l----~~p~p~V~QefInH-~g~l~KVyViGd~v~-------~~~R~S 87 (159)
.|+|+||+.+. .+..++++.+.+. +..+ ....++++||||+. .+...+|+++|+++. ++.|.+
T Consensus 163 ~pvVvKPl~G~---gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~ 239 (338)
T PRK12458 163 DKMILKPLQGS---GGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVP 239 (338)
T ss_pred CeEEEEECCCC---CccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECCEEEeeccceeEEEEec
Confidence 35999998876 4677778876653 3222 11237999999996 357899999999988 445544
Q ss_pred CCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHh---CCcEeeeeeC
Q 038140 88 TPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTL---DLTIFGFDVV 159 (159)
Q Consensus 88 lpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~l---GL~LfGfDvI 159 (159)
-++-.. .+...+ +.+ ....+ .+..+++|..+...+ ||...|+|+|
T Consensus 240 ~~~d~R-sN~~~G---g~~----------------------~~~~l-~~~~~~ia~~~~~~l~~~GL~~~gVDli 287 (338)
T PRK12458 240 AGGDVR-SNVHAG---GSV----------------------VKHTL-TKEELELCEAIRPKLVRDGLFFVGLDIV 287 (338)
T ss_pred CCCCee-ecccCC---Ccc----------------------cCcCC-CHHHHHHHHHHHHHHhhcCCeEEeEEEE
Confidence 322110 011111 100 00112 245677777776666 9999999986
No 10
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.54 E-value=3.5e-07 Score=85.73 Aligned_cols=67 Identities=16% Similarity=0.425 Sum_probs=52.3
Q ss_pred CCCCceEeecccccCCccceeEEE-EeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAI-VFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPN 90 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~l-v~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn 90 (159)
.+.||+|+||..+. .+..|.+ +.+++.|... ....++++|+||+ |.-|+|+|+|+++..+.|.--++
T Consensus 247 ~iG~PvVVKP~~G~---~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~ 319 (727)
T PRK14016 247 EIGYPVVVKPLDGN---HGRGVTVNITTREEIEAAYAVASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPH 319 (727)
T ss_pred HcCCCEEEEECCCC---CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcE
Confidence 57899999997544 5788998 8888777542 1113699999997 78899999999998888774454
No 11
>PRK05246 glutathione synthetase; Provisional
Probab=98.45 E-value=1.4e-06 Score=73.86 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=48.4
Q ss_pred hhHHHhhcCCCCceEeecccccCCccceeEEEEeC-CCcCcC----C--CCCCceeEeeeecCC-CeEEEEEEECCeEEE
Q 038140 11 LPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFG-TEDFKD----L--NVPIPAVVQEYVNHS-STLFKFYVLGENIFH 82 (159)
Q Consensus 11 ~~~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~-~~~L~~----l--~~p~p~V~QefInH~-g~l~KVyViGd~v~~ 82 (159)
+.+.+.+.+ |+|+||..++ .+..+..+.. ...+.. + ....|+++|+||+-. +...+|+|+|+++..
T Consensus 147 ~~~~~~~~~---~vVlKP~~G~---~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~ 220 (316)
T PRK05246 147 IRAFRAEHG---DIILKPLDGM---GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVG 220 (316)
T ss_pred HHHHHHHCC---CEEEEECCCC---CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhh
Confidence 334444444 9999998876 4667777744 332221 1 112479999999764 568899999999764
Q ss_pred --EEecCCCC
Q 038140 83 --AVKKSTPN 90 (159)
Q Consensus 83 --~~R~Slpn 90 (159)
+.|.+.++
T Consensus 221 ~a~~R~~~~~ 230 (316)
T PRK05246 221 YALARIPAGG 230 (316)
T ss_pred heeEecCCCC
Confidence 66765443
No 12
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=98.33 E-value=3.1e-06 Score=80.80 Aligned_cols=67 Identities=12% Similarity=0.378 Sum_probs=51.3
Q ss_pred CCCCceEeecccccCCccceeEEE-EeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAI-VFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPN 90 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~l-v~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn 90 (159)
.+.||+|+||..+. .+..+.+ +.+++.|... ....++++|+||. |.-|+|+|+|+++..+.|+-.|+
T Consensus 246 ~ig~PvVVKP~~g~---~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~ 318 (864)
T TIGR02068 246 DLGYPVVIKPYDGN---HGRGVTINILTRDEIESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAH 318 (864)
T ss_pred HcCCCEEEEECCCC---CccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCc
Confidence 46799999997654 4778888 8888777552 1123689999996 79999999999988886664455
No 13
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.32 E-value=1.9e-06 Score=71.71 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=72.6
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCCc
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNSG 92 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~~ 92 (159)
..+.||+|+||..+.| |..+.++.+.+++.+. ....++++||||+ |.-|-|.|+|+++....+...++
T Consensus 130 ~~~~~P~ivKP~~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~~-- 202 (304)
T PRK01372 130 DKLGLPLVVKPAREGS---SVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPAG-- 202 (304)
T ss_pred hhcCCCEEEeeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEecC--
Confidence 4679999999988775 4678899998877542 2234799999998 78999999999754332221111
Q ss_pred hhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 93 ILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 93 ~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
+...|.+.-. ......... ........+.++++|..+.+.+|+. .+++|++
T Consensus 203 -----------~~~~~~~~~~-~g~~~~~~p----~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~ 254 (304)
T PRK01372 203 -----------EFYDYEAKYL-AGGTQYICP----AGLPAEIEAELQELALKAYRALGCRGWGRVDFM 254 (304)
T ss_pred -----------CEEeeecccc-CCCeEEEeC----CCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEE
Confidence 1111111000 000000000 0001112467889999999999996 7789974
No 14
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.25 E-value=3.8e-06 Score=70.08 Aligned_cols=119 Identities=20% Similarity=0.156 Sum_probs=71.6
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEEC-CeE-EEEEecCCCC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLG-ENI-FHAVKKSTPN 90 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViG-d~v-~~~~R~Slpn 90 (159)
..+.||+|+||..+.| |..+.++.+.+.|... ....++++||||+ |.-|.|.++| +.. .+..+..-..
T Consensus 143 ~~~~~P~vvKP~~~~~---s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~~~~~~~~~~~~~~~ 217 (315)
T TIGR01205 143 EPLGFPVIVKPAREGS---SVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIK--GRELEVSILGNEEALPIIEIVPEIE 217 (315)
T ss_pred HhcCCCEEEEeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECCCCccceEEecCCCC
Confidence 4689999999977764 5678999999887653 2234799999996 8999999999 432 2222221000
Q ss_pred CchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCC-cEeeeeeC
Q 038140 91 SGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDL-TIFGFDVV 159 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL-~LfGfDvI 159 (159)
....|+. +-.......... ........+.++++|.++.+.||+ ..+++|++
T Consensus 218 -------------~~~~~~~-~~~~~~~~~~~p----~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~ 269 (315)
T TIGR01205 218 -------------GFYDYEA-KYLDGSTEYVIP----APLDEELEEKIKELALKAYKALGCRGLARVDFF 269 (315)
T ss_pred -------------CeeCccc-ccCCCCeeEEeC----CCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 0000110 000000000000 000122346789999999999999 59999974
No 15
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.23 E-value=1.1e-05 Score=76.27 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=47.4
Q ss_pred CCCceEeecccccCCccceeEEEEeCC---CcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCC
Q 038140 20 LSLPCIVKPQVACGTADSHSMAIVFGT---EDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNS 91 (159)
Q Consensus 20 l~fP~I~Kp~~A~Gs~~sH~M~lv~~~---~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~ 91 (159)
..||+|+||..+. .|..+.++-+. +++.+. .....+++||||. |.-|+|+|||+++..+.++--+++
T Consensus 523 ~g~PvVVKP~~g~---~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V 597 (752)
T PRK02471 523 ADKAIVVKPKSTN---FGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANV 597 (752)
T ss_pred cCCCEEEEECCCC---CcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCcc
Confidence 4799999996655 56777776543 333221 1123589999995 899999999999777755544555
Q ss_pred c
Q 038140 92 G 92 (159)
Q Consensus 92 ~ 92 (159)
.
T Consensus 598 ~ 598 (752)
T PRK02471 598 V 598 (752)
T ss_pred c
Confidence 3
No 16
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.19 E-value=9.3e-06 Score=74.03 Aligned_cols=63 Identities=16% Similarity=0.321 Sum_probs=47.1
Q ss_pred ceEeecccccCCccceeEEE-EeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCC
Q 038140 23 PCIVKPQVACGTADSHSMAI-VFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPN 90 (159)
Q Consensus 23 P~I~Kp~~A~Gs~~sH~M~l-v~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn 90 (159)
|+|+||..+ + .+..|.+ +.+++.|... .....+++|+||. |.-|+++|||+++..+.+.--|+
T Consensus 333 ~vVVKP~~G--~-~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~ 401 (547)
T TIGR03103 333 AVVVKPVRG--E-QGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPE 401 (547)
T ss_pred CEEEEECCC--C-CCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEecc--CCeEEEEEECCEEEEEEEecCcE
Confidence 799999554 3 6888987 8888877652 1123689999995 78999999999988776443343
No 17
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.03 E-value=1.4e-05 Score=66.82 Aligned_cols=105 Identities=21% Similarity=0.215 Sum_probs=65.1
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCCC-CCceeEeeeecCCCeEEEEEEE----CCeEEEEEecCCCCCc
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNV-PIPAVVQEYVNHSSTLFKFYVL----GENIFHAVKKSTPNSG 92 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~-p~p~V~QefInH~g~l~KVyVi----Gd~v~~~~R~Slpn~~ 92 (159)
..+.||+|+||..+. .|..+.++.+.+.+..... -.++++||||. |.-|-+-++ |+.+.+..|..+.-
T Consensus 145 ~~~~~P~viKP~~g~---~s~gv~~v~~~~el~~~~~~~~~~lvqeyi~--G~e~~v~~~~~~~G~~~~~~~~~~~~~-- 217 (326)
T PRK12767 145 GELQFPLFVKPRDGS---ASIGVFKVNDKEELEFLLEYVPNLIIQEFIE--GQEYTVDVLCDLNGEVISIVPRKRIEV-- 217 (326)
T ss_pred ccCCCCEEEEeCCCC---CccCeEEeCCHHHHHHHHHhCCCeEEEeccC--CceEEEEEEEcCCCCEEEEEEeeeeee--
Confidence 568999999996655 4678999999888765311 13799999994 455554443 33344444432210
Q ss_pred hhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 93 ILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 93 ~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
..+ .... + ...+.+.+.+++.++.+.+|++ .+++|++
T Consensus 218 -----~~g---~~~~--~--------------------~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~ 255 (326)
T PRK12767 218 -----RAG---ETSK--G--------------------VTVKDPELFKLAERLAEALGARGPLNIQCF 255 (326)
T ss_pred -----cCC---ceeE--E--------------------EEcCCHHHHHHHHHHHHhcCCeeeEEEEEE
Confidence 001 1100 0 0111256888999999999995 8888874
No 18
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.02 E-value=2.4e-05 Score=65.62 Aligned_cols=116 Identities=14% Similarity=0.172 Sum_probs=70.7
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEE-EEEecCCCCC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIF-HAVKKSTPNS 91 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~-~~~R~Slpn~ 91 (159)
..+.||+|+||..++ .|..+.++.++++|... .. .++++||||. |.=|-|.|+|+... .+++.+...+
T Consensus 127 ~~~~~P~vVKP~~gg---ss~Gv~~v~~~~eL~~a~~~~~~~-~~~lvEefI~--G~E~tv~vl~~~~~~~~~i~~~~~~ 200 (296)
T PRK14569 127 DEISFPVAVKPSSGG---SSIATFKVKSIQELKHAYEEASKY-GEVMIEQWVT--GKEITVAIVNDEVYSSVWIEPQNEF 200 (296)
T ss_pred hhcCCCEEEEeCCCC---CCcCeEEcCCHHHHHHHHHHHHhc-CCEEEEcccc--cEEEEEEEECCcCcceEEEecCCCc
Confidence 468999999997654 36789999999888652 12 2689999995 79999999998642 2232221111
Q ss_pred chhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 92 GILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 92 ~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
........+ .... ..|. .......+.++++|.++-+.||+. +.++|++
T Consensus 201 ~~~~~k~~~---~~~~-----~~P~------------~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~ 249 (296)
T PRK14569 201 YDYESKYSG---KSIY-----HSPS------------GLCEQKELEVRQLAKKAYDLLGCSGHARVDFI 249 (296)
T ss_pred CChhhccCC---CcEE-----EeCC------------CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 100000000 0000 0010 001223468999999999999974 7788863
No 19
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=97.97 E-value=9.3e-06 Score=61.68 Aligned_cols=114 Identities=22% Similarity=0.232 Sum_probs=64.1
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-------CC--CCceeEeeeecCCCeEEEEEEECCeEEEE--EecC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------NV--PIPAVVQEYVNHSSTLFKFYVLGENIFHA--VKKS 87 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~~--p~p~V~QefInH~g~l~KVyViGd~v~~~--~R~S 87 (159)
.+.||+|+||..+.| |..+.++.++++|... .. ..++++||||+-...-+-+++.++.+.+. .|.
T Consensus 37 ~~~~p~vvKp~~g~g---s~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~- 112 (184)
T PF13535_consen 37 DLGFPFVVKPVDGSG---SRGVFIVHSPEELEAALAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRY- 112 (184)
T ss_dssp HSSSSEEEEESS-ST---TTT-EEESSHHHHHHHHHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEE-
T ss_pred HcCCCEEEEcCcccc---CCCEEEeCCHHHHHHHHHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEE-
Confidence 345999999988875 5889999999888774 11 23699999999445556666666665332 222
Q ss_pred CCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCC--cEeeeeeC
Q 038140 88 TPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDL--TIFGFDVV 159 (159)
Q Consensus 88 lpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL--~LfGfDvI 159 (159)
...... ... ......+.. .......+.+++.+.++-+.+|+ -.|++|++
T Consensus 113 ~~~~~~-----~~~--~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~ 163 (184)
T PF13535_consen 113 VRQSPG-----HFS--GGVPTGYSV----------------PSEPPLPEELRDLARKLLRALGYRNGFFHIDFI 163 (184)
T ss_dssp EEEETC-----CCS--SSEEEEEEE----------------S--CEHHHHHHHHHHHHHHHHT--SEEEEEEEE
T ss_pred eccccc-----ccc--cceeeeeec----------------ccccccHHHHHHHHHHHHHHcCCceEEEEEEEE
Confidence 111000 000 001111100 00112237899999999999998 88899874
No 20
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=97.93 E-value=5.5e-05 Score=63.18 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=44.1
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||..++| |-.+.++.+.++|... ....++++||||+ |.-|-|-|+|+
T Consensus 122 ~~l~~P~vvKP~~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~--G~E~sv~vl~~ 182 (299)
T PRK14571 122 SPLGYPCVVKPRREGS---SIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP--GREMTVSILET 182 (299)
T ss_pred hhcCCCEEEecCCCCC---cCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc--ceEEEEEEEcC
Confidence 4689999999977664 5777899998887542 1123699999997 78999999986
No 21
>PRK06849 hypothetical protein; Provisional
Probab=97.89 E-value=0.00019 Score=62.06 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=65.8
Q ss_pred CCCceEeecccccCCccceeEEEEeCCCcCcCCCC--CCceeEeeeecCCCeEEEEEEECCeEEEE--EecCCCCCchhh
Q 038140 20 LSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNV--PIPAVVQEYVNHSSTLFKFYVLGENIFHA--VKKSTPNSGILM 95 (159)
Q Consensus 20 l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~--p~p~V~QefInH~g~l~KVyViGd~v~~~--~R~Slpn~~~~~ 95 (159)
..||+|+||..++| +..+.++.+++.+..+.. ..|+++||||.-...-.-.++.+.++... .++ ....
T Consensus 151 ~~~P~vlKP~~~~~---~~~v~~~~~~~~l~~~~~~~~~~~ivQe~I~G~e~~~~~~~~~G~v~~~~~~~~---~~~~-- 222 (389)
T PRK06849 151 PHTPYVLKPIYSRF---VRRVDLLPKEAALKELPISKDNPWVMQEFIQGKEYCSYSIVRSGELRAHSCYKP---EYCA-- 222 (389)
T ss_pred CCCcEEEEeCcccC---CCeEEEecCHHHhcccccCCCCCeEEEEEecCCeEEEEEEEECCEEEEEEEeec---cccC--
Confidence 47999999988775 456777888777766532 24799999999544333344555555332 121 1100
Q ss_pred hhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 96 KSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 96 ~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
..+ ..+.|.+ .+.+.+++++..+.+++|++ .++||++
T Consensus 223 --~~~---~~~~~~~----------------------~~~~~l~~~~~~~~~~l~~~G~~~~df~ 260 (389)
T PRK06849 223 --GSG---AQIAFQP----------------------INHPRIEEFVTHFVKELNYTGQISFDFI 260 (389)
T ss_pred --CCC---ceeEeEE----------------------CCcHHHHHHHHHHHHhcCceeEEEEEEE
Confidence 011 1222221 12356889999999999999 8899974
No 22
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=97.85 E-value=2.2e-05 Score=62.01 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=62.4
Q ss_pred CCCChhHHHhhcCCCCceEeecccccCCccceeEEEEeCC-CcCcCC------CCCCceeEeeeecCC-CeEEEEEEECC
Q 038140 7 KDPGLPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGT-EDFKDL------NVPIPAVVQEYVNHS-STLFKFYVLGE 78 (159)
Q Consensus 7 ~~~~~~~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~-~~L~~l------~~p~p~V~QefInH~-g~l~KVyViGd 78 (159)
|.+++.+.+.+.+= +|+||+.+.|. ...+.+-.. ..++.+ ..+.|+++|+|++-- .=-.++.+++.
T Consensus 20 ~~~~i~~f~~~~~~---~VlKPl~g~gG---~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG 93 (173)
T PF02955_consen 20 DKEEIRAFIEEHGD---IVLKPLDGMGG---RGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKEGDKRIILFNG 93 (173)
T ss_dssp -HHHHHHHHHHHSS---EEEEESS--TT---TT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-EEEEEEETT
T ss_pred CHHHHHHHHHHCCC---EEEEECCCCCC---cCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccCCCEEEEEECC
Confidence 44455566666554 99999999974 455555442 223221 223589999999854 33788888887
Q ss_pred eEE-EEEecCC-CCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCcEeee
Q 038140 79 NIF-HAVKKST-PNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLTIFGF 156 (159)
Q Consensus 79 ~v~-~~~R~Sl-pn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~LfGf 156 (159)
+.. ++.|.+- .++.. +...+ +...- ......+.+.+++++..|++. ||-+.|+
T Consensus 94 ~~~~av~R~P~~gd~R~--N~~~G---g~~~~-------------------~~lt~~e~~i~~~i~~~L~~~-Gl~f~Gi 148 (173)
T PF02955_consen 94 EPSHAVRRIPAKGDFRS--NLAAG---GSAEP-------------------AELTEREREICEQIGPKLRED-GLLFVGI 148 (173)
T ss_dssp EE-SEEEEE--SS-S-----GGGT---SCEEE-------------------EE--HHHHHHHHHHHHHHHHT-T--EEEE
T ss_pred EEhHHeecCCCCCCcee--eeccC---Cceee-------------------cCCCHHHHHHHHHHHHHHhhc-CcEEEEE
Confidence 754 4444433 23321 22222 11110 001133467888888888877 9999999
Q ss_pred eeC
Q 038140 157 DVV 159 (159)
Q Consensus 157 DvI 159 (159)
|||
T Consensus 149 Dvi 151 (173)
T PF02955_consen 149 DVI 151 (173)
T ss_dssp EEE
T ss_pred ecc
Confidence 996
No 23
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=97.80 E-value=0.00075 Score=58.04 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=73.7
Q ss_pred CC-ceEeecccccCCccceeEEEEeCCCcCc--------------------------CCCCCCceeEeeee--cCC----
Q 038140 21 SL-PCIVKPQVACGTADSHSMAIVFGTEDFK--------------------------DLNVPIPAVVQEYV--NHS---- 67 (159)
Q Consensus 21 ~f-P~I~Kp~~A~Gs~~sH~M~lv~~~~~L~--------------------------~l~~p~p~V~QefI--nH~---- 67 (159)
.+ |+|+||+.+. .+..+.++.+.++.. .+..+....+|||+ +|.
T Consensus 74 ~~~~VVVKPl~Gs---~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~ 150 (317)
T TIGR02291 74 DHPDFVIKPAQGS---GGKGILVITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDG 150 (317)
T ss_pred cCCCEEEEECCCC---CccCeEEEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhc
Confidence 56 6999997766 688899997764422 11111124677887 442
Q ss_pred -----CeEEEEEEECCeEEEE-EecCCC--CCchhhhhhccCCccceEeccCC-CCC-------ccccccCCCCCccccC
Q 038140 68 -----STLFKFYVLGENIFHA-VKKSTP--NSGILMKSYERNGLRPILFDSLK-SLP-------IDTENQNSGDSISCTV 131 (159)
Q Consensus 68 -----g~l~KVyViGd~v~~~-~R~Slp--n~~~~~~~~~~~~~~~i~Fds~~-~~p-------~~~~~~~~~~~~~~~~ 131 (159)
...++|+++|+..... .|.+.. ++. .|...+. .....|-.. .+. .-..+..+.-...+-.
T Consensus 151 ~~~~~v~diRV~vv~~~~vaa~~R~~~~~~~~~--tN~~~Gg--~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ 226 (317)
T TIGR02291 151 FSYEGVPDIRIIVFKGYPVMAMMRLPTRASDGK--ANLHQGA--VGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQ 226 (317)
T ss_pred cccCCCCCEEEEEECCEEEEEEEEccCccCCcc--cccccCC--ceeeeecCCCccccccccCCccccCCCcccccccCC
Confidence 2689999999997655 455542 322 1333221 111111110 000 0000000000011223
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEeeeeeC
Q 038140 132 DLDLELIKDAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 132 ~~~~~~~~~ia~~Lr~~lGL~LfGfDvI 159 (159)
.+..+.+.++|....+.+|+.++|+|++
T Consensus 227 ip~~~el~~la~~A~~~~g~~~~GvDii 254 (317)
T TIGR02291 227 VPHWERLLELAASCWELTGLGYMGVDMV 254 (317)
T ss_pred ChhHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3445678899999999999999999985
No 24
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=97.77 E-value=0.00025 Score=66.98 Aligned_cols=67 Identities=19% Similarity=0.399 Sum_probs=48.1
Q ss_pred CCceEeecccccCCccceeEEEEeCC---CcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCCc
Q 038140 21 SLPCIVKPQVACGTADSHSMAIVFGT---EDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNSG 92 (159)
Q Consensus 21 ~fP~I~Kp~~A~Gs~~sH~M~lv~~~---~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~~ 92 (159)
.||+|+||..+. .|-.++++.+. +.+.+. .....+++|+||. |.-|+|+|||+++..+.+.-.+|+-
T Consensus 511 g~PVVVKP~~g~---~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~Vi 585 (737)
T TIGR01435 511 NKAIVVKPKSTN---YGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVT 585 (737)
T ss_pred CCCEEEeeCCCC---CcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEE
Confidence 699999996655 46677887663 333321 1223589999996 8999999999998877655456653
No 25
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.67 E-value=0.00019 Score=61.56 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=43.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||..+. .|..++++.++++|... ....++++||||. |.-|-|-|+|+
T Consensus 169 ~l~~PvvVKP~~gg---sS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~--G~E~sv~vi~~ 228 (347)
T PRK14572 169 SLGFPQFLKPVEGG---SSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS--GTEVSCGVLER 228 (347)
T ss_pred hcCCCEEEecCCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc--cEEEEEEEEeC
Confidence 58999999997655 35788999999887552 1223689999996 79999999974
No 26
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.66 E-value=0.0001 Score=62.79 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=45.0
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||..++| |-.+.++.++++|... ....++++|+||. |.=|-|.|+|+
T Consensus 159 ~~~~~P~vVKP~~~gs---S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~ 219 (333)
T PRK01966 159 AKLGLPVFVKPANLGS---SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGN 219 (333)
T ss_pred HhcCCCEEEEeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECC
Confidence 4689999999977664 5678999999887652 1224699999998 69999999996
No 27
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.64 E-value=9.1e-05 Score=59.43 Aligned_cols=120 Identities=23% Similarity=0.235 Sum_probs=71.3
Q ss_pred hcCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECC---eEEEEEecCC
Q 038140 17 DAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGE---NIFHAVKKST 88 (159)
Q Consensus 17 ~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd---~v~~~~R~Sl 88 (159)
...++||+|+||...+ .|-.+.+|.+.++|... ....++++|||| .|+=|-|-|+|+ .+.-......
T Consensus 29 ~~~l~~P~~VKP~~~G---sS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~G~E~tv~vl~~~~~~~~~~~ei~~ 103 (203)
T PF07478_consen 29 LEDLGFPLFVKPASEG---SSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--SGREFTVGVLGNGEPRVLPPVEIVF 103 (203)
T ss_dssp HHHHSSSEEEEESSTS---TTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----SSEEEEEEEEESSSTEEEEEEEEEE
T ss_pred HhhcCCCEEEEECCCC---ccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--cccceEEEEEecCCcccCceEEEEc
Confidence 3579999999997655 46778899999888762 333579999999 999999999993 3433332221
Q ss_pred CCCchhhhhhccCCccceEeccCCCC-CccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-Eeeeee
Q 038140 89 PNSGILMKSYERNGLRPILFDSLKSL-PIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDV 158 (159)
Q Consensus 89 pn~~~~~~~~~~~~~~~i~Fds~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDv 158 (159)
++ +.++|++--.. ......... ...+....+.++++|.++-+.||+. ..=+|+
T Consensus 104 ~~-------------~~~d~~~Ky~~~~~~~~~~~p----a~l~~~~~~~i~~~a~~a~~~lg~~~~~RiD~ 158 (203)
T PF07478_consen 104 PS-------------EFYDYEAKYQPADSETEYIIP----ADLSEELQEKIKEIAKKAFKALGCRGYARIDF 158 (203)
T ss_dssp SS-------------SEEEHHHHHSGCCSCEEEESS-----SS-HHHHHHHHHHHHHHHHHTTTCSEEEEEE
T ss_pred CC-------------CceehhheeccCCCceEEEec----CCCCHHHHHHHHHHHHHHHHHHcCCCceeEEE
Confidence 11 23333321100 000000000 0111233578999999999999984 444553
No 28
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.60 E-value=0.00055 Score=59.50 Aligned_cols=57 Identities=19% Similarity=0.446 Sum_probs=45.2
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCe
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
..+.||+|+||...+ .|..|.++.++++|... ....++++||||. |.-+-|-|+|+.
T Consensus 168 ~~lg~PviVKP~~~G---sS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~ 229 (364)
T PRK14570 168 EVLGYPVIVKPAVLG---SSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNE 229 (364)
T ss_pred HhcCCCEEEEeCCCC---CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCC
Confidence 468999999996555 35679999999877652 2223689999998 799999999984
No 29
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.54 E-value=0.00026 Score=60.60 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=43.7
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCe
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
..+.||+|+||..+. .|..+.++.++++|... .....+++||||. |.=+-|-|+|+.
T Consensus 162 ~~l~~P~iVKP~~~g---sS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~ 223 (343)
T PRK14568 162 ATLTYPVFVKPARSG---SSFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNG 223 (343)
T ss_pred hhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCC
Confidence 468999999997665 36788899999888652 1223689999997 577788888863
No 30
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=97.37 E-value=0.0004 Score=53.36 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=48.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeeecCCCeEEEEEEECCe----EEEEEecCCCCCchh
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGEN----IFHAVKKSTPNSGIL 94 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefInH~g~l~KVyViGd~----v~~~~R~Slpn~~~~ 94 (159)
...+|+|+||..++| +..+.++.+.+.+...... -.++||||. |.=+=+.++.+. +..+-|--+..-..
T Consensus 29 ~~~~~~viKp~~G~G---g~~i~~~~~~~~~~~~~~~-~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~- 101 (161)
T PF02655_consen 29 PIDGPWVIKPRDGAG---GEGIRIVDSEDELEEFLNK-LRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDG- 101 (161)
T ss_dssp --SSSEEEEESS----------B--SS--TTE--------EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET----
T ss_pred ccCCcEEEEeCCCCC---CCCeEEECCchhhcccccc-ceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccc-
Confidence 458899999988885 6778888888877764221 249999997 555555555432 22223332211000
Q ss_pred hhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHh-CCc-EeeeeeC
Q 038140 95 MKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTL-DLT-IFGFDVV 159 (159)
Q Consensus 95 ~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~l-GL~-LfGfDvI 159 (159)
...-.+ .. ........+.+.++|+++.+.| ||. ++|+|+|
T Consensus 102 ~~~~~G---~~----------------------~~~~~~~~~~~~~~~~~i~~~l~gl~G~~giD~I 143 (161)
T PF02655_consen 102 RFRYCG---GI----------------------VPADTPLKEEIIELARRIAEALPGLRGYVGIDFI 143 (161)
T ss_dssp -TEEEE---EE----------------------ES----HHHHHHHHHHHHHTTSTT--EEEEEEEE
T ss_pred eeeecc---cc----------------------cccCCchHHHHHHHHHHHHHHcCCCeeeEeEEEE
Confidence 000001 00 0001222678999999999999 875 8899986
No 31
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=97.11 E-value=0.00081 Score=57.58 Aligned_cols=55 Identities=20% Similarity=0.482 Sum_probs=39.7
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC----C-----CCCceeEeeeecCCCeEEEEEEE
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N-----VPIPAVVQEYVNHSSTLFKFYVL 76 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~-----~p~p~V~QefInH~g~l~KVyVi 76 (159)
..+.||+|+||..+. .|..+.++.++++|... . ...++++||||+. +.-+-|.++
T Consensus 133 ~~~g~P~VvKP~~g~---~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~-~~E~sv~~~ 196 (380)
T TIGR01142 133 EKIGYPCVVKPVMSS---SGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDF-DYEITLLTV 196 (380)
T ss_pred HHcCCCEEEEECCCc---CCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCC-CEEEEEEEE
Confidence 368899999997554 46789999999887552 0 1236999999984 455666655
No 32
>PRK07206 hypothetical protein; Provisional
Probab=97.09 E-value=0.0026 Score=55.18 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=60.9
Q ss_pred CCceEeecccccCCccceeEEEEeCCCcCcCC-----C-------CCCceeEeeeecCCCeEEEE--EEECCeEEE--EE
Q 038140 21 SLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----N-------VPIPAVVQEYVNHSSTLFKF--YVLGENIFH--AV 84 (159)
Q Consensus 21 ~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~-------~p~p~V~QefInH~g~l~KV--yViGd~v~~--~~ 84 (159)
.||+|+||..+.| |..+.++.++++|... . ...++++||||. |.-|=| ++.+.++.+ .+
T Consensus 146 ~~P~VvKP~~g~g---s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~~~~G~~~~~~~~ 220 (416)
T PRK07206 146 DRPVVIKPLESAG---SDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFVSLDGNHLVTEIV 220 (416)
T ss_pred CCCEEEeCCCCCC---CCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEEEECCEEEEEEeE
Confidence 3499999977665 5688999998876441 0 013689999997 445544 333444433 23
Q ss_pred ecCCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc--Eeeeee
Q 038140 85 KKSTPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT--IFGFDV 158 (159)
Q Consensus 85 R~Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~--LfGfDv 158 (159)
|..-+.. .. +....+.....|. ..+..+.+.+++.++-++||+. .+++|+
T Consensus 221 ~~~~~~~-------~~---~~~~~~~~~~~p~--------------~~~~~~~i~~~~~~~~~alg~~~G~~h~E~ 272 (416)
T PRK07206 221 RYHKTSL-------NS---GSTVYDYDEFLDY--------------SEPEYQELVDYTKQALDALGIKNGPAHAEV 272 (416)
T ss_pred Eeeeccc-------CC---CCceecccccCCc--------------cHHHHHHHHHHHHHHHHHcCCccCCceEEE
Confidence 2211111 00 1111111100110 1123567888999999999984 566665
No 33
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=97.07 E-value=0.0019 Score=55.83 Aligned_cols=111 Identities=15% Similarity=0.225 Sum_probs=64.3
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC---CCCceeEeeeecCCCeEEEEEEECC---eEEEEEecCCCCCc
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN---VPIPAVVQEYVNHSSTLFKFYVLGE---NIFHAVKKSTPNSG 92 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~---~p~p~V~QefInH~g~l~KVyViGd---~v~~~~R~Slpn~~ 92 (159)
.+.||+|+||... ...|+.++++.++++|...- ...++++||||+- +.-|-|-++.+ .+.++ |-..|..
T Consensus 133 ~~g~P~vlKp~~~--g~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~~-~~E~sv~~~~~~~G~~~~~--p~~e~~~ 207 (372)
T PRK06019 133 DLGLPAVLKTRRG--GYDGKGQWVIRSAEDLEAAWALLGSVPCILEEFVPF-EREVSVIVARGRDGEVVFY--PLVENVH 207 (372)
T ss_pred HcCCcEEEEeCCC--CcCCCCeEEECCHHHHHHHHHhcCCCCEEEEecCCC-CeEEEEEEEECCCCCEEEe--CCcccEE
Confidence 5899999999643 22578899999998876531 1237999999984 44455555543 22221 1111211
Q ss_pred hhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-Eeeeee
Q 038140 93 ILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDV 158 (159)
Q Consensus 93 ~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDv 158 (159)
.. +..... . .|. ...+...+.++++|+.+-+.||+. .+++|+
T Consensus 208 ------~~---gi~~~~-~--~pa------------~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEf 250 (372)
T PRK06019 208 ------RN---GILRTS-I--APA------------RISAELQAQAEEIASRIAEELDYVGVLAVEF 250 (372)
T ss_pred ------eC---CEEEEE-E--CCC------------CCCHHHHHHHHHHHHHHHHHcCccceeEEEE
Confidence 11 111111 0 111 001223567889999999999976 666665
No 34
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=97.07 E-value=0.0028 Score=54.10 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=38.1
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC---CCCceeEeeeecCCCeEEEEEEE
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN---VPIPAVVQEYVNHSSTLFKFYVL 76 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~---~p~p~V~QefInH~g~l~KVyVi 76 (159)
.+.||+|+||.... ..+..+.++.++++|...- ...++++||||+. +.-+-|.++
T Consensus 131 ~~g~P~vvKp~~~g--~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~I~~-~~E~sv~~~ 188 (352)
T TIGR01161 131 ELGFPVVLKARTGG--YDGRGQYRIRNEADLPQAAKELGDRECIVEEFVPF-ERELSVIVA 188 (352)
T ss_pred HcCCCEEEEeCCCC--CCCCCEEEECCHHHHHHHHHhcCCCcEEEEecCCC-CeEEEEEEE
Confidence 57899999997543 2367889999988775521 1126899999984 344455444
No 35
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=96.98 E-value=0.0038 Score=61.05 Aligned_cols=62 Identities=19% Similarity=0.484 Sum_probs=45.2
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-------CCCCceeEeeeecCC-CeEEEEEEECCeEEE
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------NVPIPAVVQEYVNHS-STLFKFYVLGENIFH 82 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~~p~p~V~QefInH~-g~l~KVyViGd~v~~ 82 (159)
..+.||+|+||....| +..|.++.++++|... ....|+++||||..| ..-.-+++-|+.+.+
T Consensus 701 ~~igyPvIVKP~~~~G---g~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i 770 (1050)
T TIGR01369 701 SEIGYPVLVRPSYVLG---GRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSDGEEVLI 770 (1050)
T ss_pred HhcCCCEEEEECCCCC---CCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEeCCEEEE
Confidence 3678999999977664 5789999999888652 223579999999854 444555666666654
No 36
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.96 E-value=0.0043 Score=60.83 Aligned_cols=56 Identities=11% Similarity=0.460 Sum_probs=41.4
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||.... .+..|.++.++++|... ....|+++||||+ |.-|=|.++.|
T Consensus 702 ~~igyPvVVKP~~~~---Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~--G~E~~Vd~i~d 762 (1068)
T PRK12815 702 KRIGYPVLIRPSYVI---GGQGMAVVYDEPALEAYLAENASQLYPILIDQFID--GKEYEVDAISD 762 (1068)
T ss_pred HhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeec--CceEEEEEEEc
Confidence 368899999997666 46889999999887652 1234799999993 45566666644
No 37
>PRK02186 argininosuccinate lyase; Provisional
Probab=96.94 E-value=0.0035 Score=60.18 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=65.0
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC----C--CCCceeEeeeecCCCeEEEEEEECCeEE--EEEecCCC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N--VPIPAVVQEYVNHSSTLFKFYVLGENIF--HAVKKSTP 89 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~--~p~p~V~QefInH~g~l~KVyViGd~v~--~~~R~Slp 89 (159)
..+.||+|+||..+.| |..+.++.++++|... . ...++++||||.-.-.-.-+++.++.+. .++|....
T Consensus 139 ~~~~~PvVVKP~~g~g---S~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~G~E~sVe~i~~~g~~~i~~i~~k~~~ 215 (887)
T PRK02186 139 DGLTYPVVVKPRMGSG---SVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVEGDEYSVETLTVARGHQVLGITRKHLG 215 (887)
T ss_pred HhCCCCEEEEeCCCCC---CCCeEEECCHHHHHHHHHHHHhcCCCcEEEeecccCCcEEEEEEEECCcEEEEEEEeeecC
Confidence 3678999999977665 5678899998877542 1 1247999999985444444454444332 23443221
Q ss_pred CCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc--Eeeeee
Q 038140 90 NSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT--IFGFDV 158 (159)
Q Consensus 90 n~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~--LfGfDv 158 (159)
. .+.+.......|... .....+.+.+++.++-+.||+. .|++|+
T Consensus 216 ~-------------~~~~ve~g~~~P~~l------------~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~ 261 (887)
T PRK02186 216 P-------------PPHFVEIGHDFPAPL------------SAPQRERIVRTVLRALDAVGYAFGPAHTEL 261 (887)
T ss_pred C-------------CCCeEEeccccCCCC------------CHHHHHHHHHHHHHHHHHcCCCcCceEEEE
Confidence 1 010000000111100 1122467889999999999995 466775
No 38
>PRK08462 biotin carboxylase; Validated
Probab=96.90 E-value=0.0037 Score=55.06 Aligned_cols=57 Identities=18% Similarity=0.371 Sum_probs=42.4
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||..+. .|..|.++.++++|...- ...++++||||.. +.-+-|.++|+
T Consensus 151 ~~~g~PvvvKP~~g~---gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~~ 218 (445)
T PRK08462 151 KEIGYPVILKAAAGG---GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINN-PRHIEVQILGD 218 (445)
T ss_pred HHcCCCEEEEeCCCC---CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCC-CeEEEEEEEEC
Confidence 358899999996665 478899999998886520 1125899999975 44477877765
No 39
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=96.88 E-value=0.0011 Score=62.66 Aligned_cols=111 Identities=22% Similarity=0.272 Sum_probs=72.8
Q ss_pred CCCceEeecccccCCccceeEEEEeCCC---cCcCC-----------------CCCCceeEeeeecCCCeEEEEEEECCe
Q 038140 20 LSLPCIVKPQVACGTADSHSMAIVFGTE---DFKDL-----------------NVPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 20 l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~---~L~~l-----------------~~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
..=|||-||.-| +-|.++|-|--. |-+.| ..+-.++.-||.+.+|..-|||-||..
T Consensus 177 f~KPFVEKPVs~----EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~ 252 (1018)
T KOG1057|consen 177 FQKPFVEKPVSA----EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPD 252 (1018)
T ss_pred ccCCcccCCCCc----ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcc
Confidence 345999999876 689999987541 22221 112348999999999999999999987
Q ss_pred EEEE-EecCCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCcEeeeee
Q 038140 80 IFHA-VKKSTPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLTIFGFDV 158 (159)
Q Consensus 80 v~~~-~R~Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~LfGfDv 158 (159)
+.+. .|+| |-++ +.+.-|++- ....-.-...+.=+.+|+.++-+|+-+..|||+
T Consensus 253 YaHAEaRKS-PvvD-----------GkV~Rns~G-------------KEvRYpv~Ls~~EK~iA~KVciAF~Q~VCGFDL 307 (1018)
T KOG1057|consen 253 YAHAEARKS-PVVD-----------GKVERNSDG-------------KEVRYPVILNSSEKQIARKVCIAFKQTVCGFDL 307 (1018)
T ss_pred hhhhhhccC-cccc-----------ceeeecCCC-------------ceeeceeecChhhHHHHhHHHhhccccccchHH
Confidence 7665 5887 3321 233333320 001111111122346899999999999999997
Q ss_pred C
Q 038140 159 V 159 (159)
Q Consensus 159 I 159 (159)
+
T Consensus 308 L 308 (1018)
T KOG1057|consen 308 L 308 (1018)
T ss_pred h
Confidence 5
No 40
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.83 E-value=0.0049 Score=60.36 Aligned_cols=61 Identities=16% Similarity=0.441 Sum_probs=43.5
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-------CCCCceeEeeeecCC-CeEEEEEEECCeEE
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------NVPIPAVVQEYVNHS-STLFKFYVLGENIF 81 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~~p~p~V~QefInH~-g~l~KVyViGd~v~ 81 (159)
..+.||+|+||.... .|..|.++.++++|... ....|+++||||... ..-.-+++-|+.+.
T Consensus 701 ~~igyPvvVKP~~~~---Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v~ 769 (1066)
T PRK05294 701 EEIGYPVLVRPSYVL---GGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVL 769 (1066)
T ss_pred HhcCCCeEEEeCCCC---CCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeEE
Confidence 357899999996554 56889999999887652 223479999999765 45555555565443
No 41
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.70 E-value=0.0058 Score=53.63 Aligned_cols=57 Identities=12% Similarity=0.248 Sum_probs=40.0
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||..++ .|+.+.++.++++|...- ...++++||||.. +.-+-+.++++
T Consensus 149 ~~~~~P~VvKP~~g~---gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 216 (450)
T PRK06111 149 RQIGYPVMLKASAGG---GGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIED-PRHIEIQLLAD 216 (450)
T ss_pred HHhCCCEEEEeCCCC---CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCC-CcEEEEEEEEc
Confidence 358899999996555 478999999998876420 1136999999984 33455555543
No 42
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=96.50 E-value=0.008 Score=59.49 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=68.1
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC----C-------CCCceeEeeeecCCCeEEEEEEECCe----EEE
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N-------VPIPAVVQEYVNHSSTLFKFYVLGEN----IFH 82 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~-------~p~p~V~QefInH~g~l~KVyViGd~----v~~ 82 (159)
..+.||+|+||..++ .+..|.++.++++|... . ...++++|+||.. +.=+-|-++||. +++
T Consensus 149 e~iGyPvIVKP~~GG---GGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g-~reIeVqVlgD~~G~vv~l 224 (1143)
T TIGR01235 149 AAIGYPVIIKASWGG---GGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIER-PRHIEVQLLGDKHGNVVHL 224 (1143)
T ss_pred HHcCCCEEEEECCCC---CCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCC-CeEEEEEEEEeCCCCEEEE
Confidence 368899999996655 47889999999887542 0 0126899999964 566888888775 444
Q ss_pred EEec-CCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-Eeeeee
Q 038140 83 AVKK-STPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDV 158 (159)
Q Consensus 83 ~~R~-Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDv 158 (159)
+.|- |...-. . ..+.+ .|.. .. .....+.+.++|..+.+.+|+. .+.+|+
T Consensus 225 ~eRdcsvqrr~-------q---k~ie~-----aPa~-----~L------~~e~r~~I~~~A~kla~aLgy~G~gtVEF 276 (1143)
T TIGR01235 225 FERDCSVQRRH-------Q---KVVEV-----APAP-----YL------SREVRDEIAEYAVKLAKAVNYINAGTVEF 276 (1143)
T ss_pred EeccccccccC-------c---eEEEE-----eCCC-----CC------CHHHHHHHHHHHHHHHHHcCCcceEEEEE
Confidence 5453 322100 0 11111 0100 00 0122457889999999999965 445665
No 43
>PRK05586 biotin carboxylase; Validated
Probab=96.48 E-value=0.0017 Score=57.46 Aligned_cols=57 Identities=16% Similarity=0.353 Sum_probs=42.9
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||..+. .|+.|.++.++++|.+.- ...++++||||+.. .-+-|.|++|
T Consensus 149 ~~igyPvvvKP~~gg---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~-~ei~v~v~~d 216 (447)
T PRK05586 149 KEIGYPVMVKASAGG---GGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP-KHIEFQILGD 216 (447)
T ss_pred HHcCCCEEEEECCCC---CCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC-eEEEEEEEEC
Confidence 368999999996655 578999999998875521 01368999999843 5578878876
No 44
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=96.32 E-value=0.011 Score=53.51 Aligned_cols=58 Identities=17% Similarity=0.434 Sum_probs=43.5
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECCe
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
..+.||+|+||..++| |..|.++.++++|...- ...++++|+||.. +.-+-|-++||.
T Consensus 149 ~~igyPvvIKp~~GgG---G~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~-~r~ieVqvl~d~ 217 (499)
T PRK08654 149 EEIGYPVIIKASAGGG---GIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK-PRHIEIQILADK 217 (499)
T ss_pred HHhCCCEEEEeCCCCC---CCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC-CcEEEEEEEEcC
Confidence 3688999999976664 68999999998875521 0136899999974 455778788764
No 45
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=96.17 E-value=0.022 Score=50.91 Aligned_cols=58 Identities=9% Similarity=0.243 Sum_probs=43.4
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECCe
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
..+.||+|+||..+. .|..|.++.++++|...- ...++++|+||+. +.-+=|-|+||.
T Consensus 152 ~~igyPvvvKp~~gg---gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~-~~ei~v~v~~dg 220 (467)
T PRK12833 152 ARIGYPLMIKAAAGG---GGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR-ARHIEVQILGDG 220 (467)
T ss_pred HHhCCCEEEEECCCC---CCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEeCC
Confidence 358899999996655 478999999998876520 1135899999986 467777777774
No 46
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.09 E-value=0.016 Score=55.12 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=45.6
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCe
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
..+.||+|+||...++ |..+.+|.++++|.+. ....+++++|||. +|+=+-|.|+|+.
T Consensus 607 ~~lg~P~iVKP~~~Gs---S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~ 669 (809)
T PRK14573 607 EAFSFPMFVKTAHLGS---SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDG 669 (809)
T ss_pred HhcCCCEEEeeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCC
Confidence 4689999999977653 5788899999887652 1224689999986 5788899999985
No 47
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=95.97 E-value=0.023 Score=50.84 Aligned_cols=57 Identities=7% Similarity=0.188 Sum_probs=40.9
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----------CCCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----------NVPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----------~~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||..++ .|..|.++.++++|... ....++++|+||.. +.=+-|-|+||
T Consensus 148 ~~igyPvvvKp~~gg---Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~-~~eiev~v~~d 215 (472)
T PRK07178 148 ERIGYPVMLKATSGG---GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVN-PKHIEVQILAD 215 (472)
T ss_pred HHcCCcEEEEeCCCC---CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC-CeEEEEEEEEE
Confidence 468899999997665 47899999999888652 01135899999964 44455666654
No 48
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=95.95 E-value=0.051 Score=46.70 Aligned_cols=127 Identities=17% Similarity=0.098 Sum_probs=78.2
Q ss_pred hhcCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCC
Q 038140 16 SDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPN 90 (159)
Q Consensus 16 ~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn 90 (159)
...++.||+++||.-.. .|=.+..+.+.+++... ......++++|++ +.-..|=++|+......-+ +--
T Consensus 137 ~~~~l~~p~~Vkp~~~g---SSvg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~--~rei~v~vl~~~~~~~~l~-~~e 210 (317)
T COG1181 137 VEEGLGFPLFVKPAREG---SSVGRSPVNVEGDLQSALELAFKYDRDVLREQGIT--GREIEVGVLGNDYEEQALP-LGE 210 (317)
T ss_pred hhcccCCCEEEEcCCcc---ceeeEEEeeeccchHHHHHHHHHhCCceeeccCCC--cceEEEEecCCcccceecC-ceE
Confidence 45799999999997766 57788888888888762 2233579999999 9999999999976111111 111
Q ss_pred CchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhC-CcEeeeeeC
Q 038140 91 SGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLD-LTIFGFDVV 159 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lG-L~LfGfDvI 159 (159)
+.. .+ ...+++++ |.+..+....... ......-.+.++++|.+.-+.+| ..+.++|++
T Consensus 211 I~~-----~~--~~fydye~-Ky~~~gg~~~~~p---a~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~ 269 (317)
T COG1181 211 IPP-----KG--EEFYDYEA-KYLSTGGAQYDIP---AGLTDEIHEEIKELALRAYKALGCLGLARVDFF 269 (317)
T ss_pred Eec-----CC--CeEEeeec-cccCCCCceeeCC---CCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 110 00 01222222 1222111000000 00112235789999999999999 999999985
No 49
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=95.91 E-value=0.0056 Score=52.68 Aligned_cols=56 Identities=18% Similarity=0.432 Sum_probs=39.1
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC----C-----CCCceeEeeeecCCCeEEEEEEEC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N-----VPIPAVVQEYVNHSSTLFKFYVLG 77 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~-----~p~p~V~QefInH~g~l~KVyViG 77 (159)
..+.||+|+||..+. .|..+.++.++++|.+. . ...++++||||+. +.=+-|.++.
T Consensus 146 ~~~g~P~VvKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~-~~E~sv~~~~ 210 (395)
T PRK09288 146 EEIGYPCVVKPVMSS---SGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDF-DYEITLLTVR 210 (395)
T ss_pred HhcCCCEEEEeCCCc---CCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCC-CEEEEEEEEE
Confidence 368999999997444 46788999999877542 1 0136999999984 4445555543
No 50
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.67 E-value=0.02 Score=56.78 Aligned_cols=57 Identities=19% Similarity=0.410 Sum_probs=42.0
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-C----------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-N----------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-~----------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||..+.| |+.|.++.++++|... . ...++++|+||.. +.-+-|-++||
T Consensus 153 ~~iGyPvVVKP~~GgG---GrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g-~~~ieVqvl~D 220 (1146)
T PRK12999 153 EEIGYPIMLKASAGGG---GRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN-PRHIEVQILGD 220 (1146)
T ss_pred HHhCCCEEEEECCCCC---CCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC-CeEEEEEEEEE
Confidence 4688999999977664 7899999999887552 0 0136899999984 45566666665
No 51
>PLN02735 carbamoyl-phosphate synthase
Probab=95.65 E-value=0.024 Score=55.91 Aligned_cols=57 Identities=21% Similarity=0.495 Sum_probs=43.6
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-------CCCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------NVPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||.... .+..|.+|.++++|... ....|+++|+||.+ |.=+=|-+++|
T Consensus 734 ~~iGyPvvVKP~~g~---gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~-g~Ei~V~vl~D 797 (1102)
T PLN02735 734 KRIGYPVVVRPSYVL---GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD-ATEIDVDALAD 797 (1102)
T ss_pred HhcCCCeEEEeCCCC---CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC-cEEEEEEEEEC
Confidence 368999999997755 46799999999888652 12247999999974 67777777775
No 52
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=95.63 E-value=0.065 Score=46.60 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=40.7
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-------CCCCceeEeeeecCCCeEEEEEEECCe
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------NVPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
.+.||+|+||.... .|..+.++.+.+++... ....++++||||.--..-.-+++-|+.
T Consensus 100 ~~g~PvVvKp~~~~---~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G~E~sv~~~~~g~~ 164 (379)
T PRK13790 100 NCELPVVVKKDGLA---AGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDL 164 (379)
T ss_pred hcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccCceEEEEEEeeCCE
Confidence 57899999996433 57889999998776541 111369999999754555555555664
No 53
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=95.54 E-value=0.0083 Score=52.79 Aligned_cols=57 Identities=14% Similarity=0.282 Sum_probs=40.9
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
+.+.||+|+||..+. .|..+.++.++++|...- ...++++||||.. +.-+=|-+++|
T Consensus 149 ~~~g~PvvvKP~~g~---gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (451)
T PRK08591 149 KEIGYPVIIKATAGG---GGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLEN-PRHIEIQVLAD 216 (451)
T ss_pred HHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC-CcEEEEEEEEc
Confidence 468899999996665 468899999998876421 1135899999974 44466656654
No 54
>PRK06524 biotin carboxylase-like protein; Validated
Probab=95.36 E-value=0.0099 Score=54.01 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=42.1
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCCC----CCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNV----PIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~----p~p~V~QefInH~g~l~KVyViGd 78 (159)
+++.||+|+||.. |+ .|+.+.+|.++++|..... ...+++|+||++.-+..=+++-++
T Consensus 178 ~~IGyPvVVKP~~--GG-SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~GrEitVev~vd~d 239 (493)
T PRK06524 178 AGLGDDLVVQTPY--GD-SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIRNVEVCIEACVTRH 239 (493)
T ss_pred ccCCCcEEEEECC--CC-CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccCcEEEEEEEEEeCC
Confidence 3599999999973 44 6999999999988876311 124799999986555455565554
No 55
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=95.34 E-value=0.011 Score=52.20 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=40.8
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||..++| |..+.++.++++|...- ...++++||||.. +.-|=|-+++|
T Consensus 149 ~~ig~PvvvKP~~g~g---s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (449)
T TIGR00514 149 KRIGYPVIIKATAGGG---GRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN-PRHVEIQVLAD 216 (449)
T ss_pred HHhCCCEEEEeCCCCC---CCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC-CeEEEEEEEEc
Confidence 3688999999977664 67899999998876531 1236999999964 44455555554
No 56
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=95.16 E-value=0.039 Score=54.19 Aligned_cols=115 Identities=13% Similarity=0.271 Sum_probs=63.7
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----C--CCCceeEeeeecCCCeEEEEEEECC---eEEEEEecC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----N--VPIPAVVQEYVNHSSTLFKFYVLGE---NIFHAVKKS 87 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~--~p~p~V~QefInH~g~l~KVyViGd---~v~~~~R~S 87 (159)
..+.||+|+||..+. .+..+.++.++++|..+ . +..++++||||+.. .=+=+-|+.| .+.++ ++
T Consensus 160 ~~ig~PvVVKP~~g~---gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~-~Eisv~v~rd~~g~~~~~--~~ 233 (1066)
T PRK05294 160 EEIGYPVIIRPSFTL---GGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGW-KEYEYEVMRDKNDNCIIV--CS 233 (1066)
T ss_pred HHcCCCeEEEcCCCC---CCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCc-eEEEEEEEEcCCCCEEEE--ee
Confidence 367899999997444 56789999999887653 1 11369999999742 3333334433 12222 12
Q ss_pred CCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc--Eeeeee
Q 038140 88 TPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT--IFGFDV 158 (159)
Q Consensus 88 lpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~--LfGfDv 158 (159)
.-|+.+. ....+ +.+.+ .|.. .......+.++++|.++-+.||+. .+++|+
T Consensus 234 ~e~~dp~-gih~g---~~~~~-----~Pa~-----------~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef 286 (1066)
T PRK05294 234 IENIDPM-GVHTG---DSITV-----APAQ-----------TLTDKEYQMLRDASIAIIREIGVETGGCNVQF 286 (1066)
T ss_pred eeecccc-ceecC---CeEEE-----eCCC-----------CCCHHHHHHHHHHHHHHHHHcCCccCceEEEE
Confidence 2222110 00001 11110 0100 001122457889999999999998 777775
No 57
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=94.94 E-value=0.024 Score=50.79 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=41.0
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----------CCCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----------NVPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----------~~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||..+. .|..|.++.++++|... ....++++|+||+. +.-+-+-|+||
T Consensus 149 ~~igyPvvvKP~~gg---Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~-~~~iev~v~~d 216 (478)
T PRK08463 149 RKIGYPVILKASGGG---GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVN-PRHIEFQILGD 216 (478)
T ss_pred HHhCCCEEEEeCCCC---CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CeEEEEEEEEc
Confidence 368899999997665 46899999999887552 01236899999985 44445556655
No 58
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=94.46 E-value=0.12 Score=41.85 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=64.7
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCCC-----CCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCCch
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNV-----PIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNSGI 93 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~-----p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~~~ 93 (159)
--+||+|+|---|||. -.=..|-|+..+.++.. +.=+.+-.||+ ....++|=-||+.+.++.|.|+-.-..
T Consensus 48 ~~~fPvVvKvG~~h~G---~GKvkv~n~~~~qDi~sll~~~~~Y~T~EPfId-~kyDirvqkIG~~ykA~~R~sis~nWK 123 (203)
T PF02750_consen 48 APRFPVVVKVGHAHAG---MGKVKVDNQQDFQDIASLLAITKDYATTEPFID-AKYDIRVQKIGNNYKAYMRTSISGNWK 123 (203)
T ss_dssp -SSSSEEEEESS-STT---TTEEEE-SHHHHHHHHHHHHHHTS-EEEEE----EEEEEEEEEETTEEEEEEEEESSSTSS
T ss_pred CCCCCEEEEEccccCc---eeEEEEccHHHHHHHHHHHHhcCceEEeecccc-ceeEEEEEEEcCeEEEEEEcccccccc
Confidence 3689999998666643 22337888877776421 11145566773 467788889999999999999853331
Q ss_pred hhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHh-CCcEeeeeeC
Q 038140 94 LMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTL-DLTIFGFDVV 159 (159)
Q Consensus 94 ~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~l-GL~LfGfDvI 159 (159)
++. ++-.+.+. +..+..+.-+.+..+.+ ||+++++|+|
T Consensus 124 ----~N~---gsa~lEqi---------------------~~~~ryk~Wvd~~s~lfGGlDI~~v~ai 162 (203)
T PF02750_consen 124 ----ANT---GSAMLEQI---------------------AMTERYKLWVDECSELFGGLDICAVDAI 162 (203)
T ss_dssp ----TTS---SSEEEEEE------------------------HHHHHHHHHHGGGGG--SEEEEEEE
T ss_pred ----ccc---cchheeec---------------------CCChHHHHHHHHHHHHcCCccEEEEEEE
Confidence 122 22222211 12345666778888889 9999999975
No 59
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=94.37 E-value=0.036 Score=48.46 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=38.9
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC----C-------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N-------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~-------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||.... .|..+.++.+++++... . ...++++||||+ |.=|=|.++.|
T Consensus 135 ~~~~P~VvKP~~~~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 135 EKGAPIVVKADGLA---AGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred HcCCCEEEEeCCCC---CCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 57899999997554 45679999998776441 0 123699999997 45666666543
No 60
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=93.90 E-value=0.053 Score=43.85 Aligned_cols=57 Identities=16% Similarity=0.430 Sum_probs=40.4
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCC------C-----CCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN------V-----PIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~------~-----p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+++||..+.| +..|.++++++.|.+.- . ..|+++.+|+. +.+=+-|=|++|
T Consensus 35 ~~iGyPVliKas~ggG---G~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D 102 (211)
T PF02786_consen 35 EEIGYPVLIKASAGGG---GRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRD 102 (211)
T ss_dssp HHH-SSEEEEETTSST---TTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEE
T ss_pred HhcCCceEEeeccccc---ccccccccchhhhhhhhhhccccCccccccceEEEeeehh-hhhhhhhhhhhc
Confidence 3578999999987774 78999999998887631 0 24799999998 555666777766
No 61
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=93.45 E-value=0.11 Score=45.36 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=37.3
Q ss_pred CCCCc-eEeecccccCCccceeEEEEeCCCcCcCC-----C-----CCCceeEeeeecCCCeEEEEEEE
Q 038140 19 QLSLP-CIVKPQVACGTADSHSMAIVFGTEDFKDL-----N-----VPIPAVVQEYVNHSSTLFKFYVL 76 (159)
Q Consensus 19 ~l~fP-~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~-----~p~p~V~QefInH~g~l~KVyVi 76 (159)
.+.|| +|+||..+. .|..+.++.+++++... . ...++++||||+. .-|=|-++
T Consensus 137 ~~g~P~~VvKp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G--~E~sv~~~ 200 (423)
T TIGR00877 137 EKGAPAIVVKADGLA---AGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG--EEVSLLAF 200 (423)
T ss_pred hcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC--ceEEEEEE
Confidence 57899 999996655 45678999998776441 0 1136999999984 45555555
No 62
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=93.09 E-value=0.19 Score=49.39 Aligned_cols=46 Identities=20% Similarity=0.463 Sum_probs=34.6
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----C-CC-CceeEeeeecC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----N-VP-IPAVVQEYVNH 66 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~-~p-~p~V~QefInH 66 (159)
..+.||+|+||..+. .+..+.++.++++|... . .+ .++++||||+.
T Consensus 159 ~~igyPvIVKP~~g~---gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 159 KEIGYPVIVRPAFTL---GGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred HHhCCCeEEECCCCC---CCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 367899999997544 56788899999887653 1 11 36999999984
No 63
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=92.69 E-value=1.7 Score=37.70 Aligned_cols=100 Identities=18% Similarity=0.278 Sum_probs=65.3
Q ss_pred cCCCCc---eEeecccccCCccceeEEEEe-CCCcCcCCC--------------------CCCceeEeeeecCCCeEEEE
Q 038140 18 AQLSLP---CIVKPQVACGTADSHSMAIVF-GTEDFKDLN--------------------VPIPAVVQEYVNHSSTLFKF 73 (159)
Q Consensus 18 ~~l~fP---~I~Kp~~A~Gs~~sH~M~lv~-~~~~L~~l~--------------------~p~p~V~QefInH~g~l~KV 73 (159)
+.+++| +.+||..+.| +-...++. +.+.++.+. ...|+++|||.+---.-.=+
T Consensus 139 ~~l~~~~~~~CvKP~~g~g---g~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G~EySVD~ 215 (329)
T PF15632_consen 139 EELRFPGQPLCVKPAVGIG---GRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPGPEYSVDC 215 (329)
T ss_pred HhcCCCCceEEEecccCCC---cceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCCCeEEEEE
Confidence 457777 9999988885 56777887 445544432 24689999999877655555
Q ss_pred EEECCeEE-EEEecCCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc
Q 038140 74 YVLGENIF-HAVKKSTPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT 152 (159)
Q Consensus 74 yViGd~v~-~~~R~Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~ 152 (159)
.+=+.++. .+-|.-. . . . ..+.. .+.+.++|++|.+.+||+
T Consensus 216 l~~~G~viaaV~R~K~-G-~------~----q~l~~--------------------------~~~l~e~a~~l~~~~~l~ 257 (329)
T PF15632_consen 216 LADEGRVIAAVPRRKL-G-R------R----QVLEN--------------------------DEELIELARRLAEAFGLD 257 (329)
T ss_pred EecCCEEEEEEEEEec-C-c------e----eEEEE--------------------------CHHHHHHHHHHHHHhCCC
Confidence 55555553 5555532 1 1 0 11221 245778999999999997
Q ss_pred -Eeeeee
Q 038140 153 -IFGFDV 158 (159)
Q Consensus 153 -LfGfDv 158 (159)
+||+++
T Consensus 258 g~~NiQ~ 264 (329)
T PF15632_consen 258 GLFNIQF 264 (329)
T ss_pred ceEEEEE
Confidence 677653
No 64
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=92.66 E-value=0.15 Score=42.41 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=29.0
Q ss_pred CceEeecccccCCccceeEEEEeCCCcCcC--CCCCCceeEeeeecC-----C-CeEEEEEEEC
Q 038140 22 LPCIVKPQVACGTADSHSMAIVFGTEDFKD--LNVPIPAVVQEYVNH-----S-STLFKFYVLG 77 (159)
Q Consensus 22 fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~--l~~p~p~V~QefInH-----~-g~l~KVyViG 77 (159)
--||+||..++ .+..+.|+-+.+.+.+ .....++|+|+||.. | -..+++||+=
T Consensus 66 ~~wI~KP~~~~---rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlv 126 (292)
T PF03133_consen 66 NLWIVKPSNGS---RGRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLV 126 (292)
T ss_dssp --EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE
T ss_pred CEEEEeccccC---CCCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEE
Confidence 35999996544 6889999988877774 222357999999974 3 5677888873
No 65
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=92.55 E-value=1 Score=40.14 Aligned_cols=61 Identities=7% Similarity=0.076 Sum_probs=39.3
Q ss_pred CCCCceEeecccccCCccceeEEEEeCC-CcCcC-------C-CCCCceeEeeeecCCCeEEEEEEECCeEEE
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGT-EDFKD-------L-NVPIPAVVQEYVNHSSTLFKFYVLGENIFH 82 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~-~~L~~-------l-~~p~p~V~QefInH~g~l~KVyViGd~v~~ 82 (159)
.+.||+|+||.... .|-.|.++.+. +.+.+ + ....++|+|||+.---.-.=+|+=|+.++.
T Consensus 139 ~~~~PvVVKP~~~s---ggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~E~Svd~~~dg~~~~~ 208 (435)
T PRK06395 139 TSMKDVAVKPIGLT---GGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGEEFSLQAFSDGKHLSF 208 (435)
T ss_pred hhCCCEEEEeCCCC---CCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCceEEEEEEEcCCeEEE
Confidence 46899999996555 45688888643 22221 1 112368999999754555666676777644
No 66
>PLN02735 carbamoyl-phosphate synthase
Probab=92.26 E-value=0.59 Score=46.43 Aligned_cols=56 Identities=16% Similarity=0.436 Sum_probs=39.0
Q ss_pred CCC-CceEeecccccCCccceeEEEEeCCCcCcCC-------CCCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLS-LPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------NVPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~-fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+. ||+|+||....| +..+.++.++++|... .+..++++||||.. ..=|=|=|++|
T Consensus 177 ~iG~yPvVVKP~~~~G---G~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G-~kE~ev~Vl~D 240 (1102)
T PLN02735 177 DIGEFPLIIRPAFTLG---GTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLG-WKEYELEVMRD 240 (1102)
T ss_pred HhCCCCEEEEeCCCCC---CCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCC-CeEEEEEEEEc
Confidence 455 999999977554 4578899999887652 11236899999963 34455666655
No 67
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=92.20 E-value=0.41 Score=47.27 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=39.0
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCC-------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||..+.| +..+.++.++++|...- +..++++||||+.. .=|=|-|+.|
T Consensus 160 ~~igyPvVVKP~~g~g---G~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~-~E~sv~v~rD 223 (1068)
T PRK12815 160 EKIGFPIIVRPAYTLG---GTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGW-KEIEYEVMRD 223 (1068)
T ss_pred HHcCCCEEEEECcCCC---CCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCC-eEEEEEEEEc
Confidence 3588999999976554 56788999998876531 11369999999743 2333445544
No 68
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=92.20 E-value=0.091 Score=48.51 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=34.4
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNH 66 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH 66 (159)
..+.||+|+||.... ..|..++++.++++|... ....++++++||+.
T Consensus 153 ~~ig~P~VvKP~~gg--s~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~ 204 (577)
T PLN02948 153 DLFGYPLMLKSRRLA--YDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPF 204 (577)
T ss_pred HhcCCcEEEEeCCCC--CCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCC
Confidence 368999999995443 246778899999887552 11236899999975
No 69
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=92.11 E-value=0.24 Score=43.62 Aligned_cols=58 Identities=22% Similarity=0.214 Sum_probs=38.2
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC----CC--------CCceeEeeeecCCCeEEEEEEE
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----NV--------PIPAVVQEYVNHSSTLFKFYVL 76 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~~--------p~p~V~QefInH~g~l~KVyVi 76 (159)
..+.||+|+||..|.|. -|...+++.++++|... .. -...++||||.---.=+=+|+-
T Consensus 149 ~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s 218 (366)
T PRK13277 149 EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIGAHFNFNYFYS 218 (366)
T ss_pred cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCCCEEEEEEEEe
Confidence 35689999999999873 35667788888766542 10 0135799999844443445554
No 70
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=92.03 E-value=0.2 Score=45.18 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=45.1
Q ss_pred ChhHHHhhcCCCCceEeecccccCCccceeEEEEeCCCcCcCC------------CCCCceeEeeeecCCCeEEEEEEEC
Q 038140 10 GLPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL------------NVPIPAVVQEYVNHSSTLFKFYVLG 77 (159)
Q Consensus 10 ~~~~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l------------~~p~p~V~QefInH~g~l~KVyViG 77 (159)
+......+.| ||+|+||..+.| |..|.++.+.++|.+. ..| .+.+++||+.- .=.=|-|+|
T Consensus 143 e~~~~a~~iG--yPVivKa~~GgG---g~G~r~v~~~~el~~a~~~~~~ea~~~fg~~-~v~iEk~i~~~-rhievqv~g 215 (449)
T COG0439 143 EALAIAEEIG--YPVIVKAAAGGG---GRGMRVVRNEEELEAAFEAARGEAEAAFGNP-RVYLEKFIEGP-RHIEVQVLG 215 (449)
T ss_pred HHHHHHHHcC--CCEEEEECCCCC---cccEEEECCHHHHHHHHHHHHHHHHHhcCCC-cEEeeeeccCC-ceEEEEEEE
Confidence 3344444555 999999977664 6899999999888762 122 38999999865 334466777
Q ss_pred CeE
Q 038140 78 ENI 80 (159)
Q Consensus 78 d~v 80 (159)
|..
T Consensus 216 D~~ 218 (449)
T COG0439 216 DGH 218 (449)
T ss_pred cCc
Confidence 765
No 71
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=91.28 E-value=0.22 Score=49.85 Aligned_cols=57 Identities=9% Similarity=0.258 Sum_probs=41.4
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC----C-------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N-------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~-------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||.... .|..|.++.++++|... . ...++++||||.. +.-+-|.++||
T Consensus 147 ~~igyPvVVKP~~gg---GG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g-~~eveV~v~~D 214 (1201)
T TIGR02712 147 KEIGYPVMLKSTAGG---GGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVEN-ARHVEVQIFGD 214 (1201)
T ss_pred HhcCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEEC
Confidence 468899999997666 46889999999887531 0 1135899999985 35566666654
No 72
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=91.05 E-value=0.077 Score=41.74 Aligned_cols=49 Identities=16% Similarity=0.328 Sum_probs=34.8
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC---CCCCceeEeeeecCCCe
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL---NVPIPAVVQEYVNHSST 69 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l---~~p~p~V~QefInH~g~ 69 (159)
.+.||+|+|+...+ -+++...+|.+++++... ....||++++||+...-
T Consensus 26 ~iG~P~vlK~~~~G--YDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f~~E 77 (172)
T PF02222_consen 26 SIGFPAVLKTRRGG--YDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPFDRE 77 (172)
T ss_dssp HHTSSEEEEESSSS--CTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---ESEE
T ss_pred HcCCCEEEEccCcC--cCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCCcEE
Confidence 68999999974433 378889999999988773 12358999999997643
No 73
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=90.65 E-value=0.11 Score=45.16 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=34.7
Q ss_pred cCCCCceEeecccccCC-cccee-EEEEeCCCcCcCC-------CCCCceeEeeeecCCCeEEEEE
Q 038140 18 AQLSLPCIVKPQVACGT-ADSHS-MAIVFGTEDFKDL-------NVPIPAVVQEYVNHSSTLFKFY 74 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs-~~sH~-M~lv~~~~~L~~l-------~~p~p~V~QefInH~g~l~KVy 74 (159)
..|+||+|.||-.+.|. .++.. ...+-+.|.++-. ..|--+|+||||+-||-=-.+|
T Consensus 144 ~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsy 209 (415)
T COG3919 144 DELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSY 209 (415)
T ss_pred hheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchH
Confidence 57999999999887742 22222 2233344444331 1234589999999997544333
No 74
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=90.27 E-value=0.19 Score=44.62 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=37.8
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcC----CC-------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKD----LN-------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~----l~-------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||.-. +.|..+.++.+++++.. +. ....+++||||+- .=|=|.++.|
T Consensus 141 ~~~~PvVVKp~~~---~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G--~E~Sv~~~~d 206 (426)
T PRK13789 141 SEMLPIVIKADGL---AAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG--QEASIFAISD 206 (426)
T ss_pred hcCCCEEEEeCCC---CCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC--eEEEEEEEEC
Confidence 5789999999633 36788999999876644 11 1125899999974 4555555543
No 75
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=89.58 E-value=0.82 Score=38.89 Aligned_cols=46 Identities=30% Similarity=0.691 Sum_probs=29.5
Q ss_pred eEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeeecCCCeEEEEEEECCeEE
Q 038140 24 CIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGENIF 81 (159)
Q Consensus 24 ~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefInH~g~l~KVyViGd~v~ 81 (159)
+|+||.-+||.. .+.|. ++.++ -|++||||.--..-.- ..+|+++.
T Consensus 141 ~ViKp~dgCgge-----~i~~~-~~~pd-----~~i~qEfIeG~~lSVS-L~~GEkv~ 186 (307)
T COG1821 141 YVIKPADGCGGE-----GILFG-RDFPD-----IEIAQEFIEGEHLSVS-LSVGEKVL 186 (307)
T ss_pred EEecccccCCcc-----eeecc-CCCcc-----hhhHHHhcCCcceEEE-EecCCccc
Confidence 699999999763 22222 22233 2899999986544333 67788774
No 76
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=89.47 E-value=0.7 Score=40.42 Aligned_cols=54 Identities=28% Similarity=0.362 Sum_probs=36.6
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC----C------CCCceeEeeeecCCCeEEEEEE
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N------VPIPAVVQEYVNHSSTLFKFYV 75 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~------~p~p~V~QefInH~g~l~KVyV 75 (159)
.+.||+|+||..+- .+...+++.+++++.+. . ....+++||||..--.-+=+|+
T Consensus 147 ~i~~PvIVKp~~g~---ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G~e~sv~~f~ 210 (358)
T PRK13278 147 DIDRPVIVKLPGAK---GGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVGVPYYFHYFY 210 (358)
T ss_pred HcCCCEEEEeCCCC---CCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCCcEEEEEEEE
Confidence 35799999995443 57899999998766441 0 1236899999985433334454
No 77
>PLN02257 phosphoribosylamine--glycine ligase
Probab=85.95 E-value=1.1 Score=39.85 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=33.1
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-----------CCCCceeEeeeecC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----------NVPIPAVVQEYVNH 66 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----------~~p~p~V~QefInH 66 (159)
.+.||+|+||.... .|..+.++.+++++.+. ....++++||||.-
T Consensus 135 ~~g~PvVVKp~~~~---~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G 190 (434)
T PLN02257 135 EQGAPIVVKADGLA---AGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG 190 (434)
T ss_pred HcCCCEEEEcCCCC---CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC
Confidence 57899999997333 57899999998776431 11236899999973
No 78
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=81.30 E-value=29 Score=28.49 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=65.5
Q ss_pred HHHhhcCCCCceEeecccccCCccceeEEEEeCCCcCcC----------CC-----------C---CCceeEeeeecCCC
Q 038140 13 QRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKD----------LN-----------V---PIPAVVQEYVNHSS 68 (159)
Q Consensus 13 ~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~----------l~-----------~---p~p~V~QefInH~g 68 (159)
+.+.-..|.-++|.||.-+||+ ..|+.+...+.. |+ + ++-.++-+|+...+
T Consensus 48 ~~i~~~~Lp~~fViK~nhgsg~-----~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~ 122 (239)
T PF14305_consen 48 DDIDFDSLPDKFVIKPNHGSGS-----NIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDED 122 (239)
T ss_pred hhhhhhcCCCCEEEEEecCCCc-----EEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCC
Confidence 3444456888999999766653 344444322211 00 0 22379999998884
Q ss_pred ----eEEEEEEECCeEEEEEecCCCCCchhhhhhccCCccceEeccCC-CCCccccccCCCCCccccCCCCHHHHHHHHH
Q 038140 69 ----TLFKFYVLGENIFHAVKKSTPNSGILMKSYERNGLRPILFDSLK-SLPIDTENQNSGDSISCTVDLDLELIKDAAK 143 (159)
Q Consensus 69 ----~l~KVyViGd~v~~~~R~Slpn~~~~~~~~~~~~~~~i~Fds~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 143 (159)
..||+||...+.....--+-+.-. . ....||..= .+|.... .. .......|...+.+-++|+
T Consensus 123 ~~~~~DYKf~cF~G~~~~i~v~~~r~~~-------~---~~~~yd~dw~~l~~~~~-~~--~~~~~~kP~~l~emi~iA~ 189 (239)
T PF14305_consen 123 GKIPRDYKFFCFNGKPKFIQVDSDRFGN-------H---KRNFYDRDWNRLPFRSD-YP--PDEDIPKPKNLEEMIEIAE 189 (239)
T ss_pred CCCcceEEEEEECCEEEEEEEEeCCCCC-------e---EEEEECcccCCCccccC-CC--CCCCCCCChhHHHHHHHHH
Confidence 589999999976555543322110 1 223333321 2333111 11 1111233556788889999
Q ss_pred HHHHHh
Q 038140 144 WLAKTL 149 (159)
Q Consensus 144 ~Lr~~l 149 (159)
.|.+.+
T Consensus 190 ~Ls~~f 195 (239)
T PF14305_consen 190 KLSKGF 195 (239)
T ss_pred HHccCC
Confidence 998864
No 79
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=78.45 E-value=5.7 Score=35.01 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=28.6
Q ss_pred CceEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeeecCCCeEEEEEEECC
Q 038140 22 LPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 22 fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefInH~g~l~KVyViGd 78 (159)
+|+|.||..+.|-. .-++.-.|+.. |.++++||||.- +=+-|-+|++
T Consensus 150 kt~IlKPv~GaGG~----~el~~~~Ee~~----~~~~i~Qefi~G--~p~Svs~is~ 196 (389)
T COG2232 150 KTLILKPVSGAGGL----VELVKFDEEDP----PPGFIFQEFIEG--RPVSVSFISN 196 (389)
T ss_pred eeeEEeeccCCCce----eeecccccccC----CcceehhhhcCC--ceeEEEEEec
Confidence 34999999988763 22332222222 347999999964 4444455544
No 80
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=76.79 E-value=2 Score=37.38 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=32.7
Q ss_pred CC-CCceEeecccc-cCCccceeEEEEeCCCcCcC----CC-----------C---CCceeEeeeecCC
Q 038140 19 QL-SLPCIVKPQVA-CGTADSHSMAIVFGTEDFKD----LN-----------V---PIPAVVQEYVNHS 67 (159)
Q Consensus 19 ~l-~fP~I~Kp~~A-~Gs~~sH~M~lv~~~~~L~~----l~-----------~---p~p~V~QefInH~ 67 (159)
.+ .||+|+||..- .|.+++..+.+..+++++.+ +. . ...+++|+|++|+
T Consensus 37 ~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~ 105 (388)
T PRK00696 37 ELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIA 105 (388)
T ss_pred HcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCCCCCEEeEEEEEeccCCC
Confidence 46 89999999753 44567778888866654433 10 0 0248999999875
No 81
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.41 E-value=1.2 Score=40.65 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=35.6
Q ss_pred CCCceEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeee-------cCCCeEEEEEEE
Q 038140 20 LSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYV-------NHSSTLFKFYVL 76 (159)
Q Consensus 20 l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefI-------nH~g~l~KVyVi 76 (159)
.+-|+||||+-++ .+...+++.+.....+.. -.++|||| ||=-.+++||++
T Consensus 225 ~KrtfivkpDsga---qg~giylisDir~~g~~Q---~~~vQeyV~~pLli~dkyKfd~rvy~l 282 (565)
T KOG2158|consen 225 MKRTFIVKPDSGA---QGSGIYLISDIREKGEYQ---NKKVQEYVTYPLLISDKYKFDQRVYSL 282 (565)
T ss_pred hcccEEECCCCCC---CCcceeeechhhhhhHHH---HHHHHHHhcccccccccceeeeeeeee
Confidence 3449999997666 788899995554333332 25899998 555667788876
No 82
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=75.38 E-value=48 Score=27.82 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=70.9
Q ss_pred CCCceEeecccccCCccceeEEEEeCCCc------CcC-------CCCCCceeEeeeecC----------CCeEEEEEEE
Q 038140 20 LSLPCIVKPQVACGTADSHSMAIVFGTED------FKD-------LNVPIPAVVQEYVNH----------SSTLFKFYVL 76 (159)
Q Consensus 20 l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~------L~~-------l~~p~p~V~QefInH----------~g~l~KVyVi 76 (159)
...++++||. +|+ .++...++...++ ... +... .+++||+|.- +---.+|.++
T Consensus 72 ~~~~~viKP~--~G~-~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~liqe~i~qh~~~~~~~~~svnTiRvvT~ 147 (285)
T PF14397_consen 72 APDRFVIKPA--NGS-GGKGILVIDRRDGSEINRDISALYAGLESLGGK-DYLIQERIEQHPELAALSPSSVNTIRVVTF 147 (285)
T ss_pred cCCcEEEEeC--CCC-CccCEEEEEeecCcccccchhHHHHHHHhcCCc-cEEEEecccCCHHHHhhCCCCCCcEEEEEE
Confidence 4589999995 555 4888888876653 111 1111 5899998753 3344666666
Q ss_pred -CC-e---EEEEEecCCCCCchhhhhhccCCccceEeccCCCCCccc---cccCC-------CCCccccCCCCHHHHHHH
Q 038140 77 -GE-N---IFHAVKKSTPNSGILMKSYERNGLRPILFDSLKSLPIDT---ENQNS-------GDSISCTVDLDLELIKDA 141 (159)
Q Consensus 77 -Gd-~---v~~~~R~Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~---~~~~~-------~~~~~~~~~~~~~~~~~i 141 (159)
.+ . +..+.|-+ ++-..-++.+.+.=...|+-++- +.... ..... .-...+..-|.-+.+.++
T Consensus 148 ~~~~~~~~~~a~lRlg-~~~~~~DN~~~Ggi~~~ID~~tG--l~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l 224 (285)
T PF14397_consen 148 LDDGEVEVLMAMLRLG-RGGSGVDNFHQGGIGVGIDLATG--LGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILEL 224 (285)
T ss_pred EeCCeeEEEEEEEEeC-CCCCcccccCCCCEEEEEecCCC--ccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHH
Confidence 21 1 34567876 22221123333210112333332 11110 00000 011223345677888888
Q ss_pred HHHHHHH-hCCcEeeeeeC
Q 038140 142 AKWLAKT-LDLTIFGFDVV 159 (159)
Q Consensus 142 a~~Lr~~-lGL~LfGfDvI 159 (159)
|.+..++ -++...|.||+
T Consensus 225 ~~~~~~~~p~~~~iGWDva 243 (285)
T PF14397_consen 225 AKEAHRKFPGLGYIGWDVA 243 (285)
T ss_pred HHHHHHHCCCCCeEEEEEE
Confidence 8888765 58999999984
No 83
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=71.17 E-value=11 Score=34.31 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=33.0
Q ss_pred CceEeecccccCCccceeEEEEeCCCcC-------------cCC--------CCCCceeEeeeecCCCeEEEEEEE
Q 038140 22 LPCIVKPQVACGTADSHSMAIVFGTEDF-------------KDL--------NVPIPAVVQEYVNHSSTLFKFYVL 76 (159)
Q Consensus 22 fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L-------------~~l--------~~p~p~V~QefInH~g~l~KVyVi 76 (159)
+|+|+||.-.. .|..|.++.+++.+ .++ ....++|+|||+. |.=|=|.++
T Consensus 145 ~PvVVKP~~~a---ggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al 215 (486)
T PRK05784 145 GSVAIKPARQA---GGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVD--GVEYTLQVL 215 (486)
T ss_pred CCEEEeeCCCC---CCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccC--CeEEEEEEE
Confidence 79999995554 57799999987531 111 1123699999998 344455444
No 84
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=70.31 E-value=3.2 Score=36.11 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=37.3
Q ss_pred CCC-CceEeeccccc-CCccceeEEEEeCCCcCcCC-----C-------C------CCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLS-LPCIVKPQVAC-GTADSHSMAIVFGTEDFKDL-----N-------V------PIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~-fP~I~Kp~~A~-Gs~~sH~M~lv~~~~~L~~l-----~-------~------p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+. ||+|+||..-. |..++-.+.++.+++++.+. . . ...+++|+|++|+- =+=|-+++|
T Consensus 37 ~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~-E~~v~i~~d 115 (386)
T TIGR01016 37 KLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDK-EYYLSIVID 115 (386)
T ss_pred HhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECccCCc-eEEEEEEEc
Confidence 466 99999997432 34455688888777655331 1 0 02589999998753 333445555
Q ss_pred e
Q 038140 79 N 79 (159)
Q Consensus 79 ~ 79 (159)
.
T Consensus 116 ~ 116 (386)
T TIGR01016 116 R 116 (386)
T ss_pred C
Confidence 3
No 85
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=68.63 E-value=2.3 Score=37.24 Aligned_cols=56 Identities=21% Similarity=0.446 Sum_probs=41.1
Q ss_pred CCChhHHHhh--cCCCCceEeecccccCCccceeEEEEeCCCcCcCC----------CCCCceeEeeeecCC
Q 038140 8 DPGLPQRLSD--AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----------NVPIPAVVQEYVNHS 67 (159)
Q Consensus 8 ~~~~~~~l~~--~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----------~~p~p~V~QefInH~ 67 (159)
=++..+.+.. ..+.||+|+||.... .+|.=+++-+++++... ..+ -.++-+||+-.
T Consensus 134 fa~s~~e~~~a~~~iGfPcvvKPvMSS---SGkGqsvv~~~e~ve~AW~~A~~g~R~~~~-RVIVE~fv~fd 201 (394)
T COG0027 134 FADSLEELRAAVEKIGFPCVVKPVMSS---SGKGQSVVRSPEDVEKAWEYAQQGGRGGSG-RVIVEEFVKFD 201 (394)
T ss_pred ccccHHHHHHHHHHcCCCeeccccccc---CCCCceeecCHHHHHHHHHHHHhcCCCCCC-cEEEEEEecce
Confidence 3444555543 479999999998865 78999999999888763 112 37889999866
No 86
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=66.03 E-value=6.6 Score=35.09 Aligned_cols=57 Identities=21% Similarity=0.466 Sum_probs=36.5
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCC------CC-CceeEeeeecCCCeEEEEEEECC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN------VP-IPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~------~p-~p~V~QefInH~g~l~KVyViGd 78 (159)
..+.||+|+||...-| +..-.+++|+++|..+. .| .+++++|+|- |...|..-|+-|
T Consensus 147 ~~ig~PvIVrP~~~lG---G~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd 210 (400)
T COG0458 147 DEIGYPVIVKPSFGLG---GSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRD 210 (400)
T ss_pred hhcCCCEEEecCcCCC---CCceeEEeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEe
Confidence 4577999999977765 45668899987776631 12 2455566554 555555555543
No 87
>PF08860 DUF1827: Domain of unknown function (DUF1827); InterPro: IPR014959 This presumed domain has no known function. ; PDB: 2QZI_B.
Probab=51.93 E-value=7.4 Score=27.81 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=22.9
Q ss_pred eEeeeecCCCeEEEEEEECCeEEEEEecC
Q 038140 59 VVQEYVNHSSTLFKFYVLGENIFHAVKKS 87 (159)
Q Consensus 59 V~QefInH~g~l~KVyViGd~v~~~~R~S 87 (159)
|-+++=|.++..+|||-.|..-.++..-+
T Consensus 14 V~~qL~nTda~~vkVYSlGnT~Vvyt~a~ 42 (91)
T PF08860_consen 14 VQNQLENTDAKYVKVYSLGNTTVVYTEAP 42 (91)
T ss_dssp HHHHHHHSS-SEEEEEEETTEEEEEEEET
T ss_pred HHHHhcCCCceEEEEEecCCceEEEeeCC
Confidence 66677778899999999999987777653
No 88
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=47.60 E-value=57 Score=29.09 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=42.5
Q ss_pred eEeecccccCCccceeEEEEeCCCcCcCCC--C-CCceeEeeeecC----CCe-EEEEEEECCe-EEEEEecCC
Q 038140 24 CIVKPQVACGTADSHSMAIVFGTEDFKDLN--V-PIPAVVQEYVNH----SST-LFKFYVLGEN-IFHAVKKST 88 (159)
Q Consensus 24 ~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~--~-p~p~V~QefInH----~g~-l~KVyViGd~-v~~~~R~Sl 88 (159)
.|.||..+- ++-.+.|+-+.+-+.+-. + ..++|.|+|++= |.. +.=+++|||. --+..|.+-
T Consensus 310 yV~KPi~gR---EG~nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~~ 380 (397)
T PHA02117 310 YVSKPLLSR---EGNNIHIFEYGGESEDTDGNYAEEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIREDD 380 (397)
T ss_pred EEeccCCCc---CCCCEEEEECCeEEeccCCCCCCCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecCC
Confidence 999998876 889999986533232211 1 247999999983 233 6788999995 445567753
No 89
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.14 E-value=15 Score=34.35 Aligned_cols=48 Identities=29% Similarity=0.454 Sum_probs=35.2
Q ss_pred eEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeee------cCCCeEEEEEEEC
Q 038140 24 CIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYV------NHSSTLFKFYVLG 77 (159)
Q Consensus 24 ~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefI------nH~g~l~KVyViG 77 (159)
||+||-..+ -+=.+.++.....+.. ..|+|+|+|| |-+-...++||+=
T Consensus 308 wIVkppasa---Rg~gIrv~~kw~q~pk---~rpLvvQ~yieRP~ling~KFDlrlYv~v 361 (662)
T KOG2156|consen 308 WIVKPPASA---RGIGIRVINKWSQFPK---DRPLVVQKYIERPLLINGSKFDLRLYVVV 361 (662)
T ss_pred EEecCcccc---cCcceEeccchhhCCC---cccHHHHHHhhcceeecCcceeEEEEEEE
Confidence 999985443 5667888888776665 2478999995 6677788888763
No 90
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=38.60 E-value=28 Score=30.60 Aligned_cols=39 Identities=31% Similarity=0.300 Sum_probs=28.3
Q ss_pred ChhHHHhhcCCCCc------------eEeecccccCCccceeEEEEeCCCcCcC
Q 038140 10 GLPQRLSDAQLSLP------------CIVKPQVACGTADSHSMAIVFGTEDFKD 51 (159)
Q Consensus 10 ~~~~~l~~~~l~fP------------~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~ 51 (159)
.....|.+|||++| +|+|.-.|-| ....++.-+++++.+
T Consensus 127 ~~~~lLekAgi~~P~~~~~PeeIdr~VIVK~pgAkg---gRGyFiA~s~eef~e 177 (361)
T COG1759 127 LEYKLLEKAGLRIPKKYKSPEEIDRPVIVKLPGAKG---GRGYFIASSPEEFYE 177 (361)
T ss_pred hHHHHHHHcCCCCCcccCChHHcCCceEEecCCccC---CceEEEEcCHHHHHH
Confidence 34456778888876 7788877776 788888888765543
No 91
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=37.32 E-value=9.4 Score=26.27 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCcEeeeeeC
Q 038140 140 DAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 140 ~ia~~Lr~~lGL~LfGfDvI 159 (159)
+.+.+|++.||+|+-|+++|
T Consensus 46 ~~~~rL~~Dl~in~~gi~li 65 (84)
T PF13591_consen 46 RRIRRLHRDLGINLEGIALI 65 (84)
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 44678999999999999875
No 92
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=36.55 E-value=46 Score=29.61 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=38.3
Q ss_pred ChhHHHhhcCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCe
Q 038140 10 GLPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSST 69 (159)
Q Consensus 10 ~~~~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~ 69 (159)
++...+. .+.||.|.|.... -=+++.-++|.+++++... .... ||+-+||+=..-
T Consensus 125 el~~~~~--~~g~p~VlKtr~g--GYDGkGQ~~i~~~~~~~~~~~~~~~~~~-~vlE~fV~F~~E 184 (375)
T COG0026 125 ELDAAAA--DLGFPAVLKTRRG--GYDGKGQWRIRSDADLELRAAGLAEGGV-PVLEEFVPFERE 184 (375)
T ss_pred HHHHHHH--HcCCceEEEeccc--cccCCCeEEeeCcccchhhHhhhhccCc-eeEEeecccceE
Confidence 4444444 4559999999554 3489999999998877751 1223 399999987643
No 93
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=33.69 E-value=39 Score=27.77 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhCCcEeee
Q 038140 139 KDAAKWLAKTLDLTIFGF 156 (159)
Q Consensus 139 ~~ia~~Lr~~lGL~LfGf 156 (159)
..+|-++.+++||+|+||
T Consensus 203 T~lavelA~~~giTLigf 220 (237)
T TIGR00129 203 TDLAIEVAEESNITLIGF 220 (237)
T ss_pred hHHHHHHHHHhCCEEEEE
Confidence 366788999999999998
No 94
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=31.72 E-value=21 Score=22.52 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=10.9
Q ss_pred HHHHHHHHHhCCc
Q 038140 140 DAAKWLAKTLDLT 152 (159)
Q Consensus 140 ~ia~~Lr~~lGL~ 152 (159)
.++.+||++|||.
T Consensus 4 ~lS~~LR~ALg~~ 16 (48)
T PF04046_consen 4 KLSDELREALGMQ 16 (48)
T ss_pred ccCHHHHHHcCCC
Confidence 4678999999985
No 95
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=31.55 E-value=43 Score=27.33 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCcEeee
Q 038140 140 DAAKWLAKTLDLTIFGF 156 (159)
Q Consensus 140 ~ia~~Lr~~lGL~LfGf 156 (159)
.+|-++.+++||+|+||
T Consensus 204 ~~av~~A~~~gitLigf 220 (236)
T PF02634_consen 204 SLAVELARKLGITLIGF 220 (236)
T ss_dssp HHHHHHHHHHT-EEEEE
T ss_pred HHHHHHHHHhCCEEEEE
Confidence 45678999999999998
No 96
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=30.63 E-value=30 Score=32.36 Aligned_cols=73 Identities=14% Similarity=0.370 Sum_probs=44.1
Q ss_pred cccCCCCChhH-HH--hhcCCCCceEeecccccCCccceeEEEEeCCCcCcCC----CC-------CCceeEeeeecCCC
Q 038140 3 VIDFKDPGLPQ-RL--SDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----NV-------PIPAVVQEYVNHSS 68 (159)
Q Consensus 3 ~~~~~~~~~~~-~l--~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~~-------p~p~V~QefInH~g 68 (159)
|+.|+...... .+ ..+.+.||++.|+..+.| +-.|-|+-+++++.+. +. .-.|++-.||+ +.
T Consensus 127 vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGG---GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~-np 202 (670)
T KOG0238|consen 127 VPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGG---GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFID-NP 202 (670)
T ss_pred ccCcccccccHHHHHHHHHhcCCcEEEEeccCCC---CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhcc-CC
Confidence 45566543322 22 246899999999987775 6789999998766542 00 12366666665 23
Q ss_pred eEEEEEEECCe
Q 038140 69 TLFKFYVLGEN 79 (159)
Q Consensus 69 ~l~KVyViGd~ 79 (159)
+=.-|=|.||+
T Consensus 203 RHiEvQv~gD~ 213 (670)
T KOG0238|consen 203 RHIEVQVFGDK 213 (670)
T ss_pred ceEEEEEEecC
Confidence 33444455544
No 97
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=30.00 E-value=44 Score=23.75 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=17.8
Q ss_pred eeecCC--CeEEEEEEECCeEEEE
Q 038140 62 EYVNHS--STLFKFYVLGENIFHA 83 (159)
Q Consensus 62 efInH~--g~l~KVyViGd~v~~~ 83 (159)
.|+||- |-+|+|-.+||.=.++
T Consensus 4 ~YLNHPtFGlLy~Vc~~~e~~~lf 27 (88)
T PF12058_consen 4 TYLNHPTFGLLYRVCPVDEGQELF 27 (88)
T ss_dssp -EEEETTTEEEEEEEEECTTEEEE
T ss_pred ccccCCccchheeeeeCCCccHHH
Confidence 589998 9999999999875444
No 98
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=29.64 E-value=49 Score=27.56 Aligned_cols=40 Identities=5% Similarity=0.167 Sum_probs=24.2
Q ss_pred ceeEEEEeCCCcCcCCCCCCceeE-eeeecCCCeEEEEEEECC
Q 038140 37 SHSMAIVFGTEDFKDLNVPIPAVV-QEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 37 sH~M~lv~~~~~L~~l~~p~p~V~-QefInH~g~l~KVyViGd 78 (159)
.+...+.-.|..+.+|-. ++++ +-+|.+-.-|..+.+-++
T Consensus 39 ~~~~~lm~tP~~l~eLa~--GfL~sEGiI~s~~dI~~i~i~~~ 79 (263)
T PRK00724 39 ISHAVMMATPGDLEDFAI--GFLLSEGIIRSPEDIESIDIVES 79 (263)
T ss_pred EEEEEEEecCCCHHHHHH--HHHhhcCccCChhHccEEEEECC
Confidence 344556666777776543 3444 347777777777777665
No 99
>PF06228 ChuX_HutX: Haem utilisation ChuX/HutX; InterPro: IPR010413 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2OVI_A 2PH0_B 3FM2_B 2HQV_A.
Probab=29.22 E-value=50 Score=25.22 Aligned_cols=15 Identities=13% Similarity=0.561 Sum_probs=10.8
Q ss_pred eeecCC-CeEEEEEEE
Q 038140 62 EYVNHS-STLFKFYVL 76 (159)
Q Consensus 62 efInH~-g~l~KVyVi 76 (159)
.|+|++ ..+||||+=
T Consensus 107 ~F~~~~G~~~fKvflg 122 (141)
T PF06228_consen 107 QFFDADGEAMFKVFLG 122 (141)
T ss_dssp EEEETTSSEEEEEEE-
T ss_pred EEECCCCCEEEEEEee
Confidence 456655 899999984
No 100
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=28.66 E-value=23 Score=22.92 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=10.9
Q ss_pred HHHHHHHHHhCCc
Q 038140 140 DAAKWLAKTLDLT 152 (159)
Q Consensus 140 ~ia~~Lr~~lGL~ 152 (159)
.|+++||++|||.
T Consensus 8 ~lS~~LR~ALG~~ 20 (54)
T smart00581 8 RISDELREALGLP 20 (54)
T ss_pred cCCHHHHHHcCCC
Confidence 4678999999986
No 101
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=28.62 E-value=15 Score=26.18 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCcEeeeeeC
Q 038140 138 IKDAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 138 ~~~ia~~Lr~~lGL~LfGfDvI 159 (159)
..+.|.+|++.||+|+-|+++|
T Consensus 52 r~~~a~rL~~dl~in~~gialv 73 (101)
T PRK10265 52 VVQRAVRLRHELALDWPGIAVA 73 (101)
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 3356679999999999998864
No 102
>PF01922 SRP19: SRP19 protein; InterPro: IPR002778 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the SRP19 subunit. The SRP19 protein is unstructured but forms a compact core domain and two extended RNA-binding loops upon binding the signal recognition particle (SRP) RNA [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 3DLU_A 3DLV_B 2J37_B 1MFQ_B 3KTV_D 1RY1_B 1JID_A 1KVV_A 1KVN_A 3KTW_B ....
Probab=26.82 E-value=67 Score=22.74 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhCCcEe
Q 038140 136 ELIKDAAKWLAKTLDLTIF 154 (159)
Q Consensus 136 ~~~~~ia~~Lr~~lGL~Lf 154 (159)
..+++|++.+ +.|||+-.
T Consensus 29 P~~~EI~~a~-~~Lgl~~~ 46 (95)
T PF01922_consen 29 PTLEEIADAC-KKLGLPCV 46 (95)
T ss_dssp --HHHHHHHH-HHTTSEEE
T ss_pred CCHHHHHHHH-HHcCCCEE
Confidence 3567777777 77888643
No 103
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=26.08 E-value=61 Score=32.70 Aligned_cols=47 Identities=19% Similarity=0.537 Sum_probs=37.8
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcC-------CCCCCceeEeeeecCC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKD-------LNVPIPAVVQEYVNHS 67 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~-------l~~p~p~V~QefInH~ 67 (159)
..+.||+++.|.--- .+-.|-+++++++|+. +.++-|.|+-.||+..
T Consensus 1065 ~~VgYP~lvRPSYVL---SGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie~A 1118 (1435)
T KOG0370|consen 1065 EKVGYPVLVRPSYVL---SGAAMNVVYSESDLKSYLEQASAVSPDHPVVISKFIEGA 1118 (1435)
T ss_pred HhcCCceEeccccee---cchhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhccc
Confidence 479999999997665 5678999999999876 2345789999998754
No 104
>CHL00134 petF ferredoxin; Validated
Probab=25.32 E-value=57 Score=22.94 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCCCChhHHHhhcCCCCceEeecccccCC
Q 038140 6 FKDPGLPQRLSDAQLSLPCIVKPQVACGT 34 (159)
Q Consensus 6 ~~~~~~~~~l~~~~l~fP~I~Kp~~A~Gs 34 (159)
-....+++.+.++|+..|.-|+ .-.||+
T Consensus 22 ~~~~tLL~a~~~~Gi~i~~~C~-~G~Cg~ 49 (99)
T CHL00134 22 PDDVYILDAAEEQGIDLPYSCR-AGACST 49 (99)
T ss_pred CCCCcHHHHHHHcCCCCCcCCC-CccCCC
Confidence 3456899999999999999999 888876
No 105
>PF08816 Ivy: Inhibitor of vertebrate lysozyme (Ivy); InterPro: IPR014453 C-type lysozyme enzymes, such as hen egg white lysozyme (HEWL), provide anti-bacterial activity by cleaving peptidoglycan in Gram-positive bacterial cell walls. In humans, C-type lysozyme is found in all secretions, including tears and saliva. Certain Gram-positive bacteria can produce proteins with anti-lysozyme activity known as Inhibitor of Vertebrate Lysozyme (IVY), which act as virulence factors [, ]. IVY proteins have a 3-layer alpha(2)/beta(5)/alpha(2) topology, and contain a protruding 5-residue loop that is essential for their inhibitory effect [].; GO: 0043086 negative regulation of catalytic activity, 0042597 periplasmic space; PDB: 1GPQ_A 1XS0_A 1UUZ_B.
Probab=24.34 E-value=64 Score=23.97 Aligned_cols=20 Identities=20% Similarity=0.627 Sum_probs=14.8
Q ss_pred EeecccccCCccceeEEEEeCCCc
Q 038140 25 IVKPQVACGTADSHSMAIVFGTED 48 (159)
Q Consensus 25 I~Kp~~A~Gs~~sH~M~lv~~~~~ 48 (159)
+|||-- | .+|+|+|+|+++.
T Consensus 50 ~CkpHd-C---~~~~l~vlfs~d~ 69 (118)
T PF08816_consen 50 ACKPHD-C---ANNRLYVLFSPDK 69 (118)
T ss_dssp EE-TT--T---TTEEEEEEEETTT
T ss_pred cccccC-C---CcCeEEEEECCCC
Confidence 799955 6 5899999999854
No 106
>PF15158 DUF4579: Domain of unknown function (DUF4579)
Probab=23.93 E-value=2.3e+02 Score=22.76 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHHhCCcEeeee
Q 038140 133 LDLELIKDAAKWLAKTLDLTIFGFD 157 (159)
Q Consensus 133 ~~~~~~~~ia~~Lr~~lGL~LfGfD 157 (159)
...+.++.+++.+.+++.+|.|-.+
T Consensus 150 ~~~e~le~L~r~iA~klniNyFD~~ 174 (186)
T PF15158_consen 150 ERYEQLEYLGRRIARKLNINYFDYL 174 (186)
T ss_pred hchhhhhhhhhhhhhccCccccchh
Confidence 4468899999999999999988543
No 107
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=22.50 E-value=36 Score=33.65 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=44.1
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC----CC-------CCceeEeeeecCCCeEEEEEEECCe----EEE
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----NV-------PIPAVVQEYVNHSSTLFKFYVLGEN----IFH 82 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~~-------p~p~V~QefInH~g~l~KVyViGd~----v~~ 82 (159)
.+..||++.|-.+++| +..|-+|-++++|.+. +. .--+-+-.||. +..=.-|=++||+ |+.
T Consensus 155 ~~~gyPvmiKA~~GGG---GRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve-~pkHIEVQiLgD~~GnvvHL 230 (1149)
T COG1038 155 EEYGYPVMIKAAAGGG---GRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVE-NPKHIEVQILGDTHGNVVHL 230 (1149)
T ss_pred HhcCCcEEEEEccCCC---ccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhc-CcceeEEEEeecCCCCEEEE
Confidence 5799999999999885 7899999999888762 00 11244455554 4455566677664 555
Q ss_pred EEec
Q 038140 83 AVKK 86 (159)
Q Consensus 83 ~~R~ 86 (159)
++|-
T Consensus 231 fERD 234 (1149)
T COG1038 231 FERD 234 (1149)
T ss_pred eecc
Confidence 5554
No 108
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=20.94 E-value=90 Score=26.43 Aligned_cols=18 Identities=39% Similarity=0.459 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCcEeee
Q 038140 139 KDAAKWLAKTLDLTIFGF 156 (159)
Q Consensus 139 ~~ia~~Lr~~lGL~LfGf 156 (159)
..+|-++.+++||+|+||
T Consensus 232 T~Lai~~Ae~~~iTLvgf 249 (266)
T COG1526 232 TSLAIEAAERLGLTLVGF 249 (266)
T ss_pred hHHHHHHHHHcCCEEEEE
Confidence 356778999999999998
No 109
>PF10057 DUF2294: Uncharacterized conserved protein (DUF2294); InterPro: IPR018745 This domain of unknown function is found in a family of hypothetical bacterial proteins with no known function. It is also found at the C terminus of proteins provisionally annotated as response regulators.
Probab=20.57 E-value=1.2e+02 Score=21.91 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=28.3
Q ss_pred eEeeeecCCCeEEEEEEECCeEEEEEecCCCC
Q 038140 59 VVQEYVNHSSTLFKFYVLGENIFHAVKKSTPN 90 (159)
Q Consensus 59 V~QefInH~g~l~KVyViGd~v~~~~R~Slpn 90 (159)
+.+||+.||..-.|+++.+|.+.++-|-+|-.
T Consensus 19 ~~ke~~GkGP~~i~~~i~~~~iiv~l~g~LTp 50 (118)
T PF10057_consen 19 FYKEYFGKGPKSIKVTISDDMIIVRLEGFLTP 50 (118)
T ss_pred HHHHHhCCCCcEEEEEEECCEEEEEEECCCCH
Confidence 56789999999999999999999999987754
No 110
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=20.54 E-value=49 Score=30.04 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=25.9
Q ss_pred ceEeecccccCCccceeEEEE--eCCCcCcC----CCCCCceeEeeeecCCC
Q 038140 23 PCIVKPQVACGTADSHSMAIV--FGTEDFKD----LNVPIPAVVQEYVNHSS 68 (159)
Q Consensus 23 P~I~Kp~~A~Gs~~sH~M~lv--~~~~~L~~----l~~p~p~V~QefInH~g 68 (159)
=+|.||.-.-| ||.+++= ++++++.. ... .|+|+|||+.-.-
T Consensus 340 ~lVLKP~D~Yg---g~GV~~G~e~~~eeW~~~l~~a~~-~~yilQe~v~~~~ 387 (445)
T PF14403_consen 340 RLVLKPNDEYG---GKGVYIGWETSPEEWEAALEEAAR-EPYILQEYVRPPR 387 (445)
T ss_pred cEEeccccccC---CCCeEECCcCCHHHHHHHHHHHhc-CCcEEEEEecCCc
Confidence 37999966664 5666653 23333333 222 3899999997643
No 111
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=20.28 E-value=45 Score=24.30 Aligned_cols=14 Identities=43% Similarity=0.781 Sum_probs=11.9
Q ss_pred CCeEEEEEEECCeE
Q 038140 67 SSTLFKFYVLGENI 80 (159)
Q Consensus 67 ~g~l~KVyViGd~v 80 (159)
++.+.|+|++|...
T Consensus 20 srkmvKlYvLGSvL 33 (102)
T PF15103_consen 20 SRKMVKLYVLGSVL 33 (102)
T ss_pred CCCeEeeehhhhHH
Confidence 68899999999654
Done!