Query 038140
Match_columns 159
No_of_seqs 108 out of 176
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 1.8E-27 6.1E-32 202.6 18.0 144 8-159 149-294 (346)
2 1z2n_X Inositol 1,3,4-trisphos 99.7 2.2E-15 7.4E-20 123.9 16.6 138 13-159 127-282 (324)
3 1i7n_A Synapsin II; synapse, p 99.2 2.6E-11 9E-16 101.9 5.5 109 19-159 150-264 (309)
4 2p0a_A Synapsin-3, synapsin II 99.1 1.1E-10 3.7E-15 99.6 6.8 109 19-159 167-281 (344)
5 3t7a_A Inositol pyrophosphate 99.1 5.8E-10 2E-14 94.3 10.1 114 19-159 143-275 (330)
6 1pk8_A RAT synapsin I; ATP bin 99.0 1.1E-10 3.7E-15 102.0 4.9 109 19-159 262-376 (422)
7 1uc8_A LYSX, lysine biosynthes 98.5 6.1E-08 2.1E-12 76.8 4.5 109 19-159 121-239 (280)
8 1iow_A DD-ligase, DDLB, D-ALA\ 98.5 4.9E-07 1.7E-11 72.7 9.9 117 18-159 135-259 (306)
9 4eg0_A D-alanine--D-alanine li 98.3 5E-07 1.7E-11 74.2 5.2 120 18-159 143-268 (317)
10 3se7_A VANA; alpha-beta struct 98.3 7.1E-07 2.4E-11 74.4 6.0 118 18-159 162-294 (346)
11 3r5x_A D-alanine--D-alanine li 98.3 2.9E-07 9.8E-12 74.6 3.3 113 19-159 131-253 (307)
12 1gsa_A Glutathione synthetase; 98.3 7E-07 2.4E-11 71.7 5.5 61 23-86 156-226 (316)
13 3ln7_A Glutathione biosynthesi 98.2 3E-06 1E-10 78.6 8.2 68 18-90 522-598 (757)
14 3ln6_A Glutathione biosynthesi 98.2 2.4E-06 8.3E-11 79.1 6.7 64 18-86 517-588 (750)
15 1e4e_A Vancomycin/teicoplanin 98.1 3.1E-06 1.1E-10 70.2 6.4 57 18-79 162-223 (343)
16 2fb9_A D-alanine:D-alanine lig 98.1 8.2E-06 2.8E-10 67.4 8.0 117 19-159 148-275 (322)
17 1ehi_A LMDDL2, D-alanine:D-lac 98.0 1.2E-05 4.2E-10 67.9 8.1 123 19-159 172-305 (377)
18 2i87_A D-alanine-D-alanine lig 98.0 5.3E-06 1.8E-10 69.4 5.7 56 19-79 169-229 (364)
19 3e5n_A D-alanine-D-alanine lig 97.9 2E-05 6.8E-10 67.2 7.2 117 19-159 196-323 (386)
20 3tqt_A D-alanine--D-alanine li 97.9 1.3E-05 4.4E-10 68.2 5.8 57 18-79 176-238 (372)
21 2pvp_A D-alanine-D-alanine lig 97.9 4.1E-05 1.4E-09 64.8 8.4 116 18-159 182-310 (367)
22 2pn1_A Carbamoylphosphate synt 97.9 2.7E-05 9.2E-10 63.4 6.7 105 18-159 146-257 (331)
23 3k3p_A D-alanine--D-alanine li 97.8 1.2E-05 4E-10 68.7 3.6 122 18-159 198-325 (383)
24 4fu0_A D-alanine--D-alanine li 97.8 1.4E-05 4.9E-10 66.9 3.7 122 18-159 174-301 (357)
25 3ax6_A Phosphoribosylaminoimid 97.7 0.00017 5.9E-09 60.1 9.9 114 18-159 129-246 (380)
26 3lwb_A D-alanine--D-alanine li 97.7 2.1E-05 7.1E-10 66.7 4.2 57 18-79 185-246 (373)
27 3i12_A D-alanine-D-alanine lig 97.7 3.8E-05 1.3E-09 64.5 4.7 56 19-79 177-237 (364)
28 3vot_A L-amino acid ligase, BL 97.6 6.7E-05 2.3E-09 63.7 6.1 67 13-82 137-219 (425)
29 4dim_A Phosphoribosylglycinami 97.6 0.0001 3.4E-09 61.8 6.4 116 18-159 141-265 (403)
30 3q2o_A Phosphoribosylaminoimid 97.6 8.3E-05 2.8E-09 62.6 5.8 112 19-159 145-263 (389)
31 3df7_A Putative ATP-grAsp supe 97.6 0.00014 4.8E-09 59.8 6.6 102 18-159 130-235 (305)
32 4ffl_A PYLC; amino acid, biosy 97.4 0.00026 8.8E-09 58.7 6.5 53 19-78 123-175 (363)
33 3orq_A N5-carboxyaminoimidazol 97.3 0.0003 1E-08 59.2 5.8 110 19-159 143-259 (377)
34 3k5i_A Phosphoribosyl-aminoimi 97.2 0.00031 1.1E-08 59.8 5.1 114 19-159 158-276 (403)
35 1vkz_A Phosphoribosylamine--gl 97.0 0.00061 2.1E-08 57.8 4.7 54 19-77 139-203 (412)
36 1kjq_A GART 2, phosphoribosylg 97.0 0.00063 2.1E-08 56.6 4.6 56 19-78 146-210 (391)
37 3eth_A Phosphoribosylaminoimid 96.9 0.0018 6.1E-08 54.7 6.9 55 19-77 112-168 (355)
38 2ip4_A PURD, phosphoribosylami 96.9 0.0014 4.8E-08 55.3 6.0 54 19-77 134-194 (417)
39 2cqy_A Propionyl-COA carboxyla 96.8 4.4E-05 1.5E-09 52.3 -3.0 46 19-67 43-99 (108)
40 3ouz_A Biotin carboxylase; str 96.8 0.0022 7.4E-08 54.8 6.8 56 19-78 154-220 (446)
41 2dwc_A PH0318, 433AA long hypo 96.8 0.0013 4.5E-08 55.8 5.2 55 19-77 154-217 (433)
42 4e4t_A Phosphoribosylaminoimid 96.8 0.001 3.5E-08 57.0 4.4 54 20-77 171-227 (419)
43 1w96_A ACC, acetyl-coenzyme A 96.7 0.0016 5.4E-08 57.6 5.3 111 19-159 232-355 (554)
44 2w70_A Biotin carboxylase; lig 96.7 0.0015 5E-08 55.7 4.9 56 19-78 151-217 (449)
45 3vmm_A Alanine-anticapsin liga 96.7 0.0071 2.4E-07 52.7 9.3 110 19-159 172-315 (474)
46 3glk_A Acetyl-COA carboxylase 96.5 0.0051 1.7E-07 54.7 7.3 111 19-159 226-349 (540)
47 3u9t_A MCC alpha, methylcroton 96.5 0.0037 1.3E-07 57.0 6.6 111 19-159 176-303 (675)
48 2z04_A Phosphoribosylaminoimid 96.5 0.0017 5.8E-08 53.6 3.8 56 19-78 124-184 (365)
49 1ulz_A Pyruvate carboxylase N- 96.5 0.0029 9.9E-08 53.9 5.2 56 19-78 149-215 (451)
50 1a9x_A Carbamoyl phosphate syn 96.5 0.0024 8.3E-08 60.9 5.1 112 19-159 707-831 (1073)
51 3jrx_A Acetyl-COA carboxylase 96.4 0.0088 3E-07 53.9 7.8 111 19-159 242-365 (587)
52 3n6r_A Propionyl-COA carboxyla 96.3 0.0055 1.9E-07 56.0 6.4 111 19-159 150-277 (681)
53 2vpq_A Acetyl-COA carboxylase; 96.3 0.0055 1.9E-07 52.1 5.9 56 19-78 149-215 (451)
54 1a9x_A Carbamoyl phosphate syn 96.3 0.0098 3.4E-07 56.8 7.9 115 19-159 161-287 (1073)
55 3aw8_A PURK, phosphoribosylami 96.2 0.0027 9.3E-08 52.6 3.1 112 18-159 128-248 (369)
56 2dzd_A Pyruvate carboxylase; b 96.0 0.0057 2E-07 52.3 4.4 56 19-78 155-221 (461)
57 2xcl_A Phosphoribosylamine--gl 95.9 0.0027 9.3E-08 53.5 2.0 53 19-76 135-198 (422)
58 2yw2_A Phosphoribosylamine--gl 95.8 0.0028 9.6E-08 53.5 1.7 58 19-81 135-205 (424)
59 2pbz_A Hypothetical protein; N 95.8 0.0043 1.5E-07 51.9 2.8 43 19-65 123-167 (320)
60 3hbl_A Pyruvate carboxylase; T 95.7 0.021 7.1E-07 55.2 7.5 56 19-78 153-219 (1150)
61 2r85_A PURP protein PF1517; AT 95.6 0.0049 1.7E-07 49.6 2.4 44 20-66 125-178 (334)
62 2yrx_A Phosphoribosylglycinami 95.5 0.0085 2.9E-07 51.2 3.6 53 19-76 156-219 (451)
63 3va7_A KLLA0E08119P; carboxyla 95.5 0.013 4.3E-07 57.1 5.0 111 19-159 178-305 (1236)
64 3lp8_A Phosphoribosylamine-gly 95.3 0.007 2.4E-07 52.1 2.2 55 19-78 156-221 (442)
65 2qf7_A Pyruvate carboxylase pr 95.2 0.018 6.2E-07 55.7 5.2 56 19-78 169-235 (1165)
66 2qk4_A Trifunctional purine bi 95.2 0.0059 2E-07 52.1 1.7 54 19-77 161-226 (452)
67 3mjf_A Phosphoribosylamine--gl 95.0 0.0064 2.2E-07 52.1 1.3 55 19-78 140-205 (431)
68 3tig_A TTL protein; ATP-grAsp, 93.0 0.029 1E-06 48.2 1.4 58 17-77 143-210 (380)
69 1wr2_A Hypothetical protein PH 92.0 0.023 7.8E-07 44.7 -0.6 60 19-79 54-130 (238)
70 2r7k_A 5-formaminoimidazole-4- 88.1 0.087 3E-06 44.5 -0.3 42 21-65 150-203 (361)
71 2io8_A Bifunctional glutathion 80.7 2.3 7.8E-05 38.5 5.6 62 23-87 529-600 (619)
72 2nu8_B SCS-beta, succinyl-COA 78.8 0.57 1.9E-05 39.9 0.9 60 19-79 37-116 (388)
73 3ufx_B Succinyl-COA synthetase 78.8 0.53 1.8E-05 40.3 0.7 49 19-67 37-97 (397)
74 2fp4_B Succinyl-COA ligase [GD 66.5 2.5 8.4E-05 36.1 2.0 60 19-79 37-123 (395)
75 2vob_A Trypanothione synthetas 50.2 17 0.00057 33.1 4.6 62 23-87 544-615 (652)
76 2qzi_A Uncharacterized protein 41.9 7.7 0.00026 27.3 0.8 42 39-86 3-44 (103)
77 3n6x_A Putative glutathionylsp 40.7 7.4 0.00025 34.1 0.7 64 23-89 364-452 (474)
78 1sn9_A BBAT, tetrameric beta-B 34.1 18 0.00061 18.8 1.2 19 134-152 6-24 (26)
79 2pw9_A Putative formate dehydr 30.8 30 0.001 27.9 2.7 17 140-156 227-243 (268)
80 1mhx_A Immunoglobulin-binding 28.3 88 0.003 19.6 4.0 21 66-86 7-28 (65)
81 2xko_C PIPX, global nitrogen r 26.3 26 0.0009 23.9 1.4 22 62-83 5-28 (89)
82 1awd_A Ferredoxin; electron tr 21.5 48 0.0016 21.6 2.0 27 7-34 18-44 (94)
83 1frr_A Ferredoxin I; electron 20.1 50 0.0017 21.3 1.9 28 6-34 18-45 (95)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.95 E-value=1.8e-27 Score=202.64 Aligned_cols=144 Identities=31% Similarity=0.477 Sum_probs=112.2
Q ss_pred CCChhHHHhhcCCCCceEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeeecCCCeEEEEEEECCeEEEEEecC
Q 038140 8 DPGLPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKS 87 (159)
Q Consensus 8 ~~~~~~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~S 87 (159)
..++.+.+...++.||+|+||+.++||. +|.|++|++.++|..+.. |+++||||+|+|+.|||||||+++.+++|+|
T Consensus 149 ~~~~~~~~~~~~lg~P~VvKP~~g~Gs~-s~~v~~v~~~~~l~~~~~--~~lvQefI~~~G~dirv~VvG~~v~~~~r~s 225 (346)
T 2q7d_A 149 GDDTMRLLEKNGLTFPFICKTRVAHGTN-SHEMAIVFNQEGLNAIQP--PCVVQNFINHNAVLYKVFVVGESYTVVQRPS 225 (346)
T ss_dssp CTTHHHHHHHTTCCSSEEEECSBCSSTT-CCEEEEECSGGGTTC--C--CEEEEECCCCTTEEEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCcce-eeeeEEecCHHHHHhcCC--CEEEEEeeCCCCeEEEEEEECCEEEEEEEec
Confidence 4567777777899999999999999998 999999999999999864 7999999999999999999999999999999
Q ss_pred CCCCchhhhhhccCCccceEeccCC-CCCccccccCCCCCcc-ccCCCCHHHHHHHHHHHHHHhCCcEeeeeeC
Q 038140 88 TPNSGILMKSYERNGLRPILFDSLK-SLPIDTENQNSGDSIS-CTVDLDLELIKDAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 88 lpn~~~~~~~~~~~~~~~i~Fds~~-~~p~~~~~~~~~~~~~-~~~~~~~~~~~~ia~~Lr~~lGL~LfGfDvI 159 (159)
+||+.... +. .+.++|++++ +.+.++......+..+ ....++.+.++++|.++++.||+++||||+|
T Consensus 226 l~~~~~~~--~~---~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii 294 (346)
T 2q7d_A 226 LKNFSAGT--SD---RESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDII 294 (346)
T ss_dssp CCCCC------C---CCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCCcCcCc--cc---cccccccceeeccCCccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEE
Confidence 99975321 12 2789999964 3333333222211111 1234557899999999999999999999986
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.67 E-value=2.2e-15 Score=123.87 Aligned_cols=138 Identities=28% Similarity=0.373 Sum_probs=99.8
Q ss_pred HHHhhcCCCCceEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCCc
Q 038140 13 QRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNSG 92 (159)
Q Consensus 13 ~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~~ 92 (159)
+.+.+.++.||+|+||..+.|+..+|.|.++.++++|..+. .++++||||++.|..++|+|+|+++..+.|++++|+.
T Consensus 127 ~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~~~--~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~ 204 (324)
T 1z2n_X 127 QLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIH--FPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVH 204 (324)
T ss_dssp HHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTTCC--SSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCC
T ss_pred HHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhhcC--CCEEEEEccCCCCcEEEEEEECCEEEEEEecCccccc
Confidence 33445568899999999988877789999999999998764 4799999999999999999999999998999988875
Q ss_pred hhhhhhccCCccceEeccCC----CCCcc-----------ccccCCC---CCccccCCCCHHHHHHHHHHHHHHhCCcEe
Q 038140 93 ILMKSYERNGLRPILFDSLK----SLPID-----------TENQNSG---DSISCTVDLDLELIKDAAKWLAKTLDLTIF 154 (159)
Q Consensus 93 ~~~~~~~~~~~~~i~Fds~~----~~p~~-----------~~~~~~~---~~~~~~~~~~~~~~~~ia~~Lr~~lGL~Lf 154 (159)
.+ + ....++|+++- .+|.. ...+... .. .....++.+.++++|.++.+.||+.++
T Consensus 205 ~g-----~-~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~a~~~~~~lg~~~~ 277 (324)
T 1z2n_X 205 RC-----G-IKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDP-ILLNLTSEAEMRDLAYKVRCALGVQLC 277 (324)
T ss_dssp CS-----S-CCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCT-TTTTSCCHHHHHHHHHHHHHHHTCSEE
T ss_pred CC-----C-ccceeeccccchhhhccccccccccccccccccchhhccccCC-ccccCCCHHHHHHHHHHHHHHhCCcEE
Confidence 21 1 11357787651 11100 0001000 00 111233346899999999999999999
Q ss_pred eeeeC
Q 038140 155 GFDVV 159 (159)
Q Consensus 155 GfDvI 159 (159)
|+|++
T Consensus 278 ~vD~~ 282 (324)
T 1z2n_X 278 GIDFI 282 (324)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 99985
No 3
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.15 E-value=2.6e-11 Score=101.93 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=79.5
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCCC-----CCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCCch
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNV-----PIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNSGI 93 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~-----p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~~~ 93 (159)
.+.||+|+||..++ .+..|.++-+++.+..+.. ...+++||||+ .|..++|+|||+++..++|.|..+-+.
T Consensus 150 ~~g~PvVvK~~~Gs---~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~v~a~~Rr~~~g~wr 225 (309)
T 1i7n_A 150 LPTFPVVVKIGHAH---SGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSISGNWK 225 (309)
T ss_dssp CCCSSEEEEESSCS---TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSCTTTS
T ss_pred ccCCCEEEEeCCCC---ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-CCceEEEEEECCEEEEEEEEcCCCCCe
Confidence 36899999997655 7899999999988765321 13578999999 799999999999999999998533221
Q ss_pred hhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHh-CCcEeeeeeC
Q 038140 94 LMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTL-DLTIFGFDVV 159 (159)
Q Consensus 94 ~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~l-GL~LfGfDvI 159 (159)
. +.. + +. ...-+++ +..+++|.+..+.+ |+.+.|+|+|
T Consensus 226 t-N~~-~---~~----------------------~e~~~l~-~e~~~la~~A~~a~gGldi~GVDll 264 (309)
T 1i7n_A 226 T-NTG-S---AM----------------------LEQIAMS-DRYKLWVDACSEMFGGLDICAVKAV 264 (309)
T ss_dssp C-SCC-C---SS----------------------EEEECCC-HHHHHHHHHHTTGGGCCSEEEEEEE
T ss_pred e-cCC-c---ce----------------------eeecCCC-HHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 0 000 0 00 0011223 45889999999999 8999999975
No 4
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.10 E-value=1.1e-10 Score=99.56 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=79.5
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCCC-----CCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCCch
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNV-----PIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNSGI 93 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~-----p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~~~ 93 (159)
.+.||+|+||..++ .+..|.++-+++.+..+.. ...+++||||+ .+..++|+|||+++..++|.|..+-+.
T Consensus 167 ~~g~PvVvK~~~Gs---~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~vva~~R~~~~g~wr 242 (344)
T 2p0a_A 167 APHFPVVVKLGHAH---AGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSNYKAYMRTSISGNWK 242 (344)
T ss_dssp CSSSSEEEEESSCC---TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEEESSSCSS
T ss_pred ccCCCEEEEeCCCC---ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-CCccEEEEEECCEEEEEEEecCCCCCe
Confidence 46899999997755 7899999999988875211 12478999999 799999999999999999987543221
Q ss_pred hhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHh-CCcEeeeeeC
Q 038140 94 LMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTL-DLTIFGFDVV 159 (159)
Q Consensus 94 ~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~l-GL~LfGfDvI 159 (159)
. +.. + + .+ ..-+++ +..+++|.+..+.+ |+.+.|+|+|
T Consensus 243 t-N~~-~---~--~~--------------------e~~~l~-~e~~~la~~Aa~a~gGldi~GVDll 281 (344)
T 2p0a_A 243 A-NTG-S---A--ML--------------------EQVAMT-ERYRLWVDSCSEMFGGLDICAVKAV 281 (344)
T ss_dssp T-TSS-S---E--EE--------------------EEECCC-HHHHHHHHHHTTGGGCCSEEEEEEE
T ss_pred e-cCC-c---e--EE--------------------EeeCCC-HHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 0 100 0 0 00 011223 45889999999999 8999999975
No 5
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.07 E-value=5.8e-10 Score=94.28 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=70.7
Q ss_pred CCCCceEeeccccc------------CCccceeEEEEeCCCcC---c-CCCCCCceeEeeeecCCCeEEEEEEECCeE-E
Q 038140 19 QLSLPCIVKPQVAC------------GTADSHSMAIVFGTEDF---K-DLNVPIPAVVQEYVNHSSTLFKFYVLGENI-F 81 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~------------Gs~~sH~M~lv~~~~~L---~-~l~~p~p~V~QefInH~g~l~KVyViGd~v-~ 81 (159)
.+.+|+|.||..+. |.--..-+..+-|.++. . .+.....+++||||+.+|...||||||+++ .
T Consensus 143 ~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~ 222 (330)
T 3t7a_A 143 VFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAH 222 (330)
T ss_dssp EEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEE
T ss_pred cccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEE
Confidence 46799999997763 22112333333333221 0 122234689999999999999999999886 5
Q ss_pred EEEecCC--CCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCcEeeeeeC
Q 038140 82 HAVKKST--PNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 82 ~~~R~Sl--pn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~LfGfDvI 159 (159)
...|.|- .+-.. .+...+ + ....-.++ +..+++|.+..+.+|++..|||++
T Consensus 223 Am~R~sp~~~G~~r-~N~~gG---~----------------------~~~~v~Lt-~eek~iA~kaa~a~G~~v~GVDlL 275 (330)
T 3t7a_A 223 AEARKSPALDGKVE-RDSEGK---E----------------------VRYPVILN-AREKLIAWKVCLAFKQTVCGFDLL 275 (330)
T ss_dssp EEEEECTTSSCBCC-BCTTSC---B----------------------CCEECCCC-HHHHHHHHHHHHHTTBSEEEEEEE
T ss_pred EEEEeCCCCCCcEE-EcCCCC---c----------------------eeeeecCC-HHHHHHHHHHHHHhCCceEEEEEE
Confidence 5678773 11110 111100 0 00111223 567899999999999999999985
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.05 E-value=1.1e-10 Score=101.99 Aligned_cols=109 Identities=14% Similarity=0.188 Sum_probs=80.0
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCCC-----CCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCCch
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNV-----PIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNSGI 93 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~-----p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~~~ 93 (159)
.+.||+|+||..++ .+..|.++-+++.+..+.. ...+++||||+ .+..++|+|||+++..++|.+..+-+.
T Consensus 262 ~~g~PvVvKp~~GS---~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~vva~~Rr~~~g~Wr 337 (422)
T 1pk8_A 262 STTYPVVVKMGHAH---SGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-AKYDVRVQKIGQNYKAYMRTSVSGNWK 337 (422)
T ss_dssp CSSSSEEEEESSCC---TTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTEEEEEEEEESSSCSS
T ss_pred ccCCCEEEEeCCCC---ceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-CCceEEEEEECCEEEEEEEEcCCCCce
Confidence 47899999997765 7899999999988775311 12478999999 799999999999999999987543221
Q ss_pred hhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHh-CCcEeeeeeC
Q 038140 94 LMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTL-DLTIFGFDVV 159 (159)
Q Consensus 94 ~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~l-GL~LfGfDvI 159 (159)
. +.. + + .+. .-+++ +..+++|.+..+.+ |+.+.|+|+|
T Consensus 338 t-Nvg-~---g--~~e--------------------~i~lt-~e~~elA~kAaka~gGldiaGVDlL 376 (422)
T 1pk8_A 338 T-NTG-S---A--MLE--------------------QIAMS-DRYKLWVDTCSEIFGGLDICAVEAL 376 (422)
T ss_dssp T-TSS-C---E--EEE--------------------EECCC-HHHHHHHHHHTTGGGCCSEEEEEEE
T ss_pred e-ccC-c---e--eee--------------------eeCCC-HHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 0 110 0 0 000 01223 55889999999999 8999999975
No 7
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.53 E-value=6.1e-08 Score=76.82 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=68.8
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-------CC--CCceeEeeeecCCCeEEEEEEECCeEEEE-EecCC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------NV--PIPAVVQEYVNHSSTLFKFYVLGENIFHA-VKKST 88 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~~--p~p~V~QefInH~g~l~KVyViGd~v~~~-~R~Sl 88 (159)
.+.||+|+||..+.| |..+.++.++++|... .. ..++++||||+..+.-+.++++|+++... .|.+
T Consensus 121 ~~~~p~vvKp~~g~~---~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~- 196 (280)
T 1uc8_A 121 AFGYPVVLKPVIGSW---GRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRS- 196 (280)
T ss_dssp HHCSSEEEECSBCCB---CSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC---
T ss_pred HhCCCEEEEECCCCC---cccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEec-
Confidence 367999999987775 5666777777665542 11 34799999999888999999999987544 3432
Q ss_pred CCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCcEeeeeeC
Q 038140 89 PNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLTIFGFDVV 159 (159)
Q Consensus 89 pn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~LfGfDvI 159 (159)
.++.. +...+ +.. .| ...+ +.++++|.++.+.||+..+|+|++
T Consensus 197 ~~~~~--~~~~g---~~~-------~p---------------~~l~-~~~~~~~~~~~~~lg~g~~~vD~~ 239 (280)
T 1uc8_A 197 AHWIT--NTARG---GQA-------EN---------------CPLT-EEVARLSVKAAEAVGGGVVAVDLF 239 (280)
T ss_dssp -----------------C-------EE---------------CCCC-HHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCccc--cccCC---ccc-------cC---------------CCCC-HHHHHHHHHHHHHhCCCeEEEEEE
Confidence 22210 00000 100 00 0112 478899999999999999999974
No 8
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.52 E-value=4.9e-07 Score=72.68 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=73.0
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCC-C
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPN-S 91 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn-~ 91 (159)
..+.||+|+||..+.| |..+.++.++++|... ....++++||||+ |.-|.|.++|+++....+....+ +
T Consensus 135 ~~~~~p~vvKP~~g~~---~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~~~~ 209 (306)
T 1iow_A 135 SALGLPVIVKPSREGS---SVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPSGTF 209 (306)
T ss_dssp HTTCSSEEEEETTCCT---TTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECSSSS
T ss_pred hccCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeCCCe
Confidence 3578999999977764 5678899999887652 1234799999999 78999999999764333221111 1
Q ss_pred chh-hhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 92 GIL-MKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 92 ~~~-~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
... .+...+ +.... .|. .......+.++++|.++.+.+|++ .+|+|++
T Consensus 210 ~~~~~~~~~g---~~~~~-----~p~------------~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~ 259 (306)
T 1iow_A 210 YDYEAKFLSD---ETQYF-----CPA------------GLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 (306)
T ss_dssp SCHHHHHTCS---CCEEE-----SSC------------CCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred EchhheecCC---CeeEE-----cCC------------CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEE
Confidence 100 000000 00000 000 000111357889999999999997 9999974
No 9
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.32 E-value=5e-07 Score=74.15 Aligned_cols=120 Identities=16% Similarity=0.089 Sum_probs=68.7
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCCc
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNSG 92 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~~ 92 (159)
..+.||+|+||..+. .|..+.++.++++|... ....++++||||++ |.-|-|.|+||....+.+....+
T Consensus 143 ~~~g~PvvvKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-G~E~~v~vl~~~~~~~~~i~~~~-- 216 (317)
T 4eg0_A 143 AKLGLPLFVKPASEG---SSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEG-GGEYTACIAGDLDLPLIKIVPAG-- 216 (317)
T ss_dssp HHHCSCEEEEECC--------CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-SEEEEEEEETTCCCCCEEEEC----
T ss_pred HhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-CcEEEEEEECCcccceEEEeeCC--
Confidence 357899999997776 46778899999887652 22347999999997 79999999999643222111010
Q ss_pred hhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 93 ILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 93 ~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
....|+..- ........... .......+.++++|.++.+.+|++ ++++|++
T Consensus 217 -----------~~~~~~~k~-~~g~~~~~~P~----~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~ 268 (317)
T 4eg0_A 217 -----------EFYDYHAKY-VANDTQYLIPC----GLPAEQETELKRIARRAFDVLGCTDWGRADFM 268 (317)
T ss_dssp -------------------------CEEESSC----SSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred -----------ceechhhcc-cCCCeeEEcCC----CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 111111100 00000000000 000112467889999999999997 9999974
No 10
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.31 E-value=7.1e-07 Score=74.38 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=71.6
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECC----eEEEEEecCC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGE----NIFHAVKKST 88 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd----~v~~~~R~Sl 88 (159)
..+.||+|+||..+.| |..+.++.++++|... ....++++||||+ |.-|-|.|+|+ .+..+.+...
T Consensus 162 ~~lg~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~~~~~~~~~~e~~~ 236 (346)
T 3se7_A 162 DQLTYPVFVKPARSGS---SFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNGPELITGEVDQITL 236 (346)
T ss_dssp TTCCSSEEEEESSCCT---TTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEETTEEEECCCEEECC
T ss_pred HhcCCCEEEEeCCCCC---CcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecCCCeEEEeeEEEec
Confidence 4689999999977764 6778999999877652 2234799999999 79999999998 3332333211
Q ss_pred CCCchhhhhhccCCccceEecc--CCCCCccccccCCCCCccccCCCC---HHHHHHHHHHHHHHhCC-cEeeeeeC
Q 038140 89 PNSGILMKSYERNGLRPILFDS--LKSLPIDTENQNSGDSISCTVDLD---LELIKDAAKWLAKTLDL-TIFGFDVV 159 (159)
Q Consensus 89 pn~~~~~~~~~~~~~~~i~Fds--~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~ia~~Lr~~lGL-~LfGfDvI 159 (159)
++ +.+.|.+ .......... ...+...+ .+.++++|.++.+.||+ .++++|++
T Consensus 237 ~~-------------~~~d~~q~~~~ky~~~~~~------~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~ 294 (346)
T 3se7_A 237 SH-------------GFFKIHQESTPESGSDNSA------VTVPADISTTSRSLVQDTAKAVYRALGCRGLSRVDLF 294 (346)
T ss_dssp C---------------------------CGGGSC------EESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CC-------------CCcCcccchhccccCCCee------EEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 11 1111200 0000000000 00011122 35788999999999999 59999974
No 11
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.30 E-value=2.9e-07 Score=74.65 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=69.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEE-E-ecCCC--
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHA-V-KKSTP-- 89 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~-~-R~Slp-- 89 (159)
.+.||+|+||..++ .|..+.++.+++.|... ....++++||||+ |.-|.|.++|+++... . ++...
T Consensus 131 ~~~~P~vvKP~~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~~~~~ 205 (307)
T 3r5x_A 131 KLGFPLVVKPNSGG---SSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIK--GEEITCSIFDGKQLPIISIRHAAEFF 205 (307)
T ss_dssp HHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEETTEECCCEEEEEEEEEE
T ss_pred hcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcC--CEEEEEEEECCEEeeEEEEEcCCccc
Confidence 46899999998776 46788999998877652 1124799999999 6999999999976322 1 21110
Q ss_pred CCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 90 NSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 90 n~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
+... +....+ .... |. .......+.++++|..+.+.||+. ++++|++
T Consensus 206 ~~~~-~~~~~g---~~~~-------p~------------~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~ 253 (307)
T 3r5x_A 206 DYNA-KYDDAS---TIEE-------VI------------ELPAELKERVNKASLACYKALKCSVYARVDMM 253 (307)
T ss_dssp TTEE-EEEEEE---EEEE-------EC------------CCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred Chhh-cCCCCC---CeEe-------cC------------CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 1100 000000 0000 00 000112457899999999999999 9999974
No 12
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.30 E-value=7e-07 Score=71.69 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=46.1
Q ss_pred ceEeecccccCCccceeEEEEe-CCCcCcCC----C-C-CCceeEeeeecCC-CeEEEEEEECCeEEE--EEec
Q 038140 23 PCIVKPQVACGTADSHSMAIVF-GTEDFKDL----N-V-PIPAVVQEYVNHS-STLFKFYVLGENIFH--AVKK 86 (159)
Q Consensus 23 P~I~Kp~~A~Gs~~sH~M~lv~-~~~~L~~l----~-~-p~p~V~QefInH~-g~l~KVyViGd~v~~--~~R~ 86 (159)
|+|+||..+. .|..+.++. ++++|..+ . . ..++++||||+.. +.-+.++++|+++.. +.|.
T Consensus 156 p~vvKP~~g~---~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r~ 226 (316)
T 1gsa_A 156 DIILKPLDGM---GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARI 226 (316)
T ss_dssp SEEEECSSCC---TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEE
T ss_pred CEEEEECCCC---CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEEe
Confidence 9999997765 467788888 77766442 1 1 2479999999974 899999999998764 4554
No 13
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=98.21 E-value=3e-06 Score=78.64 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=50.5
Q ss_pred cCCCCceEeecccccCCccceeEEEE----eCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIV----FGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKST 88 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv----~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Sl 88 (159)
..+.||+|+||..+.| +..|.++ .+++++... ....++++||||. |.-+.|+|+|+++..+.+.--
T Consensus 522 ~~~g~PvVVKP~~g~~---G~GV~iv~~~v~~~eel~~al~~a~~~~~~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p 596 (757)
T 3ln7_A 522 LFENRAVVIKPKSTNY---GLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLV--GTEYRFFVLGDETLAVLLRVP 596 (757)
T ss_dssp GSSSSCEEEEESSCST---TTTCEECSSCCCCHHHHHHHHHHHHHHCSSEEEEECCC--SEEEEEEEETTEEEEEEEECC
T ss_pred HhcCCCEEEEeCCCCC---CCCeEEecCCCCCHHHHHHHHHHHHhcCCcEEEEEcCC--CcEEEEEEECCEEEEEEEEec
Confidence 4678999999977664 6788888 677766542 1123699999996 699999999999877654433
Q ss_pred CC
Q 038140 89 PN 90 (159)
Q Consensus 89 pn 90 (159)
++
T Consensus 597 ~~ 598 (757)
T 3ln7_A 597 AN 598 (757)
T ss_dssp SE
T ss_pred cc
Confidence 43
No 14
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.17 E-value=2.4e-06 Score=79.12 Aligned_cols=64 Identities=19% Similarity=0.362 Sum_probs=48.2
Q ss_pred cCCCCceEeecccccCCccceeEEEEe---CCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEec
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVF---GTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKK 86 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~---~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~ 86 (159)
..+.||+|+||..+. .+..|.++. +++++... ....++++||||+ |.-|.|+|+|+++..+.+.
T Consensus 517 ~~~g~PvVVKP~~G~---~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r 588 (750)
T 3ln6_A 517 QIQDKPIVVKPKSTN---FGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEYIE--GTEYRFFVLEGDCIAVLLR 588 (750)
T ss_dssp HSSSSCEEEEETTCC---SSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEETTEEEEEEEE
T ss_pred HhcCCcEEEEeCCCC---CCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEEeccC--CCEEEEEEECCEEEEEEEE
Confidence 357899999996555 367899998 56555431 1123699999998 7999999999998766444
No 15
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.15 E-value=3.1e-06 Score=70.22 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=45.7
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCe
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
..+.||+|+||..+.| |..+.++.++++|... ....++++||||+ |.-|.|.++|+.
T Consensus 162 ~~~~~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~ 223 (343)
T 1e4e_A 162 ATFTYPVFVKPARSGS---SFGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNS 223 (343)
T ss_dssp GGSCSCEEEEESSCCT---TTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEET
T ss_pred hccCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCC
Confidence 4578999999987774 5678999999887652 2234799999998 789999999875
No 16
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.10 E-value=8.2e-06 Score=67.35 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=71.4
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCC-eEEEEEEECCe---EE-EEEecCC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSS-TLFKFYVLGEN---IF-HAVKKST 88 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g-~l~KVyViGd~---v~-~~~R~Sl 88 (159)
.+.||+|+||..+.| |..+.++.++++|... ....++++||||+ | .-|.|.|+|+. +. ..++..-
T Consensus 148 ~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~~~~ei~~~ 222 (322)
T 2fb9_A 148 PFDPPFFVKPANTGS---SVGISRVERFQDLEAALALAFRYDEKAVVEKALS--PVRELEVGVLGNVFGEASPVGEVRYE 222 (322)
T ss_dssp CSCSCEEEEETTCCT---TTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS--SCEEEEEEEESSSSCEEEEEEEEEEE
T ss_pred ccCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC--CCeeEEEEEEeCCCceEeeeEEEeeC
Confidence 578999999977764 5688999998877652 2234799999997 5 88999999985 22 2222210
Q ss_pred CCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCC-cEeeeeeC
Q 038140 89 PNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDL-TIFGFDVV 159 (159)
Q Consensus 89 pn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL-~LfGfDvI 159 (159)
..+ ..|... -........... .......+.++++|.++-+.||+ .++++|++
T Consensus 223 ~~~--------------~~~~~k-~~~g~~~~~~Pa----~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~ 275 (322)
T 2fb9_A 223 APF--------------YDYETK-YTPGRAELLIPA----PLDPGTQETVQELALKAYKVLGVRGMARVDFF 275 (322)
T ss_dssp CCE--------------EETTTE-EECCEEEEESSC----CCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred CCc--------------cCHHHc-ccCCCeEEEeCC----CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 011 111100 000000000000 00122356899999999999999 79999974
No 17
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.04 E-value=1.2e-05 Score=67.87 Aligned_cols=123 Identities=16% Similarity=0.120 Sum_probs=71.1
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCe---EEEE-EecCCC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGEN---IFHA-VKKSTP 89 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~---v~~~-~R~Slp 89 (159)
.+.||+|+||..+.| |..+.++.++++|... ....++++||||+ |..-|-|.|+|+. +... ++...
T Consensus 172 ~~g~PvvVKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~~~~~~~~~ei~~~- 246 (377)
T 1ehi_A 172 ELGNIVFVKAANQGS---SVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN-GARELEVGVIGNDQPLVSEIGAHTVP- 246 (377)
T ss_dssp HHCSCEEEEESSCCT---TTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC-CSCEEEEEEEESSSCEEEEEEEEECT-
T ss_pred hcCCCEEEEeCCCCC---CcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC-CCceEEEEEEcCCCcEEEeeEEEEec-
Confidence 467999999987764 5678999999877652 2234799999997 2278999999983 3332 33221
Q ss_pred CCchhhhhhccCCccceEeccCCCCCc-cccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 90 NSGILMKSYERNGLRPILFDSLKSLPI-DTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 90 n~~~~~~~~~~~~~~~i~Fds~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
.... .. +...|... -... ........ .......+.++++|.++-+.||+. ++++|++
T Consensus 247 ~~~~-----~~---~~~d~~~k-~~~g~~~~~~~Pa----~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~ 305 (377)
T 1ehi_A 247 NQGS-----GD---GWYDYNNK-FVDNSAVHFQIPA----QLSPEVTKEVKQMALDAYKVLNLRGEARMDFL 305 (377)
T ss_dssp TSSS-----SS---CCCCHHHH-TTCCTTCEEESSC----CCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCC-----cC---ceeCHHhc-ccCCCCeeEEeCC----CCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 0000 00 11111110 0000 00000000 000112467889999999999998 9999974
No 18
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.04 E-value=5.3e-06 Score=69.42 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=45.3
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCe
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
.+.||+|+||..+.| |..|.++.++++|... ....++++||||+ |.-|.|.|+|+.
T Consensus 169 ~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~ 229 (364)
T 2i87_A 169 KLNYPVFVKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGND 229 (364)
T ss_dssp HCCSSEEEEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEESS
T ss_pred hcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcCC
Confidence 578999999977764 5688999999877652 2234799999998 689999999985
No 19
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=97.92 E-value=2e-05 Score=67.16 Aligned_cols=117 Identities=18% Similarity=0.117 Sum_probs=69.6
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeE-E---EEEecCCC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENI-F---HAVKKSTP 89 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v-~---~~~R~Slp 89 (159)
.+.||+|+||..+.| |..+.++.++++|... ....++++||||+ |.-|-|.|+|+.- . +.++..-.
T Consensus 196 ~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~~~gei~~~~ 270 (386)
T 3e5n_A 196 QLGLPLFVKPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAVA--GREIECAVLGNAVPHASVCGEVVVHD 270 (386)
T ss_dssp HHCSSEEEEESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEECSSSCEEEEEEEECC--
T ss_pred hcCCCEEEEECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC--CeEEEEEEEeCCCceEEEeEEEEeCC
Confidence 478999999987764 5678899999887652 2234799999998 6999999999863 1 11222111
Q ss_pred CCchhhhhhccCCccceEeccCCCCCcc-ccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 90 NSGILMKSYERNGLRPILFDSLKSLPID-TENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 90 n~~~~~~~~~~~~~~~i~Fds~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
.+. .|+.. -...+ ....... .......+.++++|.++-+.||++ ++++|++
T Consensus 271 ~~~--------------d~~~k-y~~~~~~~~~~Pa----~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~ 323 (386)
T 3e5n_A 271 AFY--------------SYATK-YISEHGAEIVIPA----DIDAQTQQRIQQIAVQAYQALGCAGMARVDVF 323 (386)
T ss_dssp ------------------------------CEESSC----SSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred ccc--------------chhcc-cCCCCCeEEEECC----CCCHHHHHHHHHHHHHHHHHhCCccEEEEEEE
Confidence 111 11100 00000 0000000 001112457889999999999998 8899974
No 20
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=97.90 E-value=1.3e-05 Score=68.16 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=43.3
Q ss_pred cCCCCc-eEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCe
Q 038140 18 AQLSLP-CIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 18 ~~l~fP-~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
..+.|| +|+||..+. .|..|.++.++++|... ....++++||||+ |.-|-|.|+|+.
T Consensus 176 ~~lg~P~vvVKP~~gg---ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 238 (372)
T 3tqt_A 176 DRWGTSELFVKAVSLG---SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNG 238 (372)
T ss_dssp HHC---CEEEEESSCC---SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESS
T ss_pred HhcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCC
Confidence 458999 999997665 47789999999887642 2234799999999 799999999986
No 21
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.87 E-value=4.1e-05 Score=64.76 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=69.8
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeE---EEEEEECCeEEEE-EecCC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTL---FKFYVLGENIFHA-VKKST 88 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l---~KVyViGd~v~~~-~R~Sl 88 (159)
..+.||+|+||..+.| |..+.++.++++|... ....++++||||+. ..- +-+.| ++++.+. .+...
T Consensus 182 ~~lg~PvvVKP~~g~s---s~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~G-~~E~svi~v~v-~g~~~~~~~ei~~ 256 (367)
T 2pvp_A 182 MNFNFPFIVKPSNAGS---SLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQG-VKEYNLAGCKI-KKDFCFSYIEEPN 256 (367)
T ss_dssp CCSCSCEEEEESSCCT---TTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCTT-CEEEEEEEEEE-TTEEEEEEEEETT
T ss_pred hccCCCEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCCC-CceeeEEEEEE-CCEEEEEEEEEec
Confidence 4688999999977764 5678999999887652 22347999999982 255 77777 7763322 12211
Q ss_pred CCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCC---HHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 89 PNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLD---LELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 89 pn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
++ +...|+. ........ ...+..++ .+.++++|.++-+.||++ ++++|++
T Consensus 257 ~~-------------~~~d~~~--ky~~g~~~------~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~ 310 (367)
T 2pvp_A 257 KQ-------------EFLDFKQ--KYLDFSRN------KAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFF 310 (367)
T ss_dssp TT-------------EEECCCC--SSCCSCCC------SCCCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEE
T ss_pred CC-------------ceEcccc--cccCCCee------EEecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Confidence 11 1112211 00000000 00011122 367899999999999986 8999974
No 22
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.85 E-value=2.7e-05 Score=63.43 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=52.9
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCC-CCCceeEeeeecCCCeEEEEEEECC-----eEEEEEecCCCCC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-VPIPAVVQEYVNHSSTLFKFYVLGE-----NIFHAVKKSTPNS 91 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-~p~p~V~QefInH~g~l~KVyViGd-----~v~~~~R~Slpn~ 91 (159)
..+.||+|+||..+.| |..+.++.++++|...- ...++++||||+ |.-|-|.+++| .+.+..|..+.
T Consensus 146 ~~~~~P~vvKp~~g~g---~~gv~~v~~~~el~~~~~~~~~~lvee~i~--G~e~~v~~~~d~~~G~~~~~~~~~~~~-- 218 (331)
T 2pn1_A 146 GEVQLPVFVKPRNGSA---SIEVRRVETVEEVEQLFSKNTDLIVQELLV--GQELGVDAYVDLISGKVTSIFIKEKLT-- 218 (331)
T ss_dssp TSSCSCEEEEESBC--------------------------CEEEEECCC--SEEEEEEEEECTTTCCEEEEEEEEEEE--
T ss_pred ccCCCCEEEEeCCCCC---CCCeEEeCCHHHHHHHHHhCCCeEEEecCC--CcEEEEEEEEecCCCeEEEEEEEEEEE--
Confidence 4688999999977764 67889999998887742 124799999998 47777777753 34344333110
Q ss_pred chhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCC-cEeeeeeC
Q 038140 92 GILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDL-TIFGFDVV 159 (159)
Q Consensus 92 ~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL-~LfGfDvI 159 (159)
. ..+ ..... .++..+.+.++|+++-+.||+ -.+++|++
T Consensus 219 ~-----~~g---~~~~~----------------------~~~~~~~~~~~~~~~~~~lg~~G~~~vd~~ 257 (331)
T 2pn1_A 219 M-----RAG---ETDKS----------------------RSVLRDDVFELVEHVLDGSGLVGPLDFDLF 257 (331)
T ss_dssp E-----ETT---EEEEE----------------------EEECCHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred e-----cCC---ceeEe----------------------EEeccHHHHHHHHHHHHHhCCcceEEEEEE
Confidence 0 001 00000 011235678899999999999 57888874
No 23
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=97.79 E-value=1.2e-05 Score=68.71 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=65.9
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCCc
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNSG 92 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~~ 92 (159)
..+.||+|+||..+. .|..+.++.++++|... ....++++||||+ |.-|-|.|+||.-..+ +.+. .
T Consensus 198 ~~lg~PvvVKP~~gg---ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~~~~~---~~~~-e 268 (383)
T 3k3p_A 198 EKLIYPVFVKPANMG---SSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNTDVKT---TLPG-E 268 (383)
T ss_dssp HHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEE---CCCE-E
T ss_pred HhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCCCeeE---EeeE-E
Confidence 468999999997766 47788999999887652 1223689999998 8999999999742111 1110 0
Q ss_pred hhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 93 ILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 93 ~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
..... +..+|+..-. .......... .......+.++++|.++-+.||+. ++++|++
T Consensus 269 ---i~~~~---~~~d~~~ky~-~g~~~~~~Pa----~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~ 325 (383)
T 3k3p_A 269 ---IVKDV---AFYDYEAKYI-DNKITMAIPA----EIDPVIVEKMRDYAATAFRTLGCCGLSRCDFF 325 (383)
T ss_dssp ---EC---------------------CEESSC----CCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ---EecCC---Cccchhhccc-CCCeeEEecC----CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEE
Confidence 00000 1112221000 0000000000 001112467889999999999998 9999974
No 24
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=97.76 E-value=1.4e-05 Score=66.86 Aligned_cols=122 Identities=17% Similarity=0.146 Sum_probs=71.7
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCCc
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNSG 92 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~~ 92 (159)
+.+.||+|+||..+. .|..|.+|.++++|... ....++++|+||+ |.-+-|.|+|+.-..+.... ...
T Consensus 174 ~~lg~PvvVKP~~gg---~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~--G~e~~v~vl~~~~~~~~~v~--~~~ 246 (357)
T 4fu0_A 174 ANLTYPLFIKPVRAG---SSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN--GFEVGCAVLGIDELIVGRVD--EIE 246 (357)
T ss_dssp HHCCSSEEEEETTCS---SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEESSSEEECCCE--EEE
T ss_pred HhcCCCEEEEECCCC---CCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC--CEEEEEEEEecCCceEEEEE--EEE
Confidence 468999999997655 47889999999888652 2234689999995 78899999987643321110 000
Q ss_pred hhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 93 ILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 93 ~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
. .. ....+.. +-...+....... .......+.++++|.++-+.||+. ++++|++
T Consensus 247 ~-----~~---~~~d~~~-k~~~~~~~~~~pa----~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~ 301 (357)
T 4fu0_A 247 L-----SS---GFFDYTE-KYTLKSSKIYMPA----RIDAEAEKRIQEAAVTIYKALGCSGFSRVDMF 301 (357)
T ss_dssp E-----CH---HHHTSCS-BCSSCCEEEESSC----SCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred c-----cc---ccccccc-cccCCCceEecCC----CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEE
Confidence 0 00 0011111 0000000000000 001122467889999999999995 8889963
No 25
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.74 E-value=0.00017 Score=60.11 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=67.0
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeeecCCCeEEEEEEECC---eEEEEEecCCCCCchh
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGE---NIFHAVKKSTPNSGIL 94 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefInH~g~l~KVyViGd---~v~~~~R~Slpn~~~~ 94 (159)
..+.||+|+||.... -.|..+.++.+++++...-. .++++||||+. |.-|.|.++++ ++.+.... -+...
T Consensus 129 ~~~~~P~vvKp~~~~--y~g~Gv~~v~~~~el~~~~~-~~~lvEe~i~~-g~e~sv~~~~~~~G~~~~~~~~--~~~~~- 201 (380)
T 3ax6_A 129 REFGFPVVQKARKGG--YDGRGVFIIKNEKDLENAIK-GETYLEEFVEI-EKELAVMVARNEKGEIACYPVV--EMYFD- 201 (380)
T ss_dssp HTTCSSEEEEESCCC-------EEEECSGGGGGGCCC-SSEEEEECCCE-EEEEEEEEEECSSCCEEEEEEE--EEC---
T ss_pred HhcCCCEEEEecCCC--CCCCCeEEECCHHHHHHHhc-CCEEEEeccCC-CeeEEEEEEECCCCCEEEECCe--eeeec-
Confidence 357899999997654 13678899999988877532 47999999986 78899999875 34332211 01100
Q ss_pred hhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 95 MKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 95 ~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
... +. ++. ...|.. ......+.+++++..+-+.||++ .+++|++
T Consensus 202 ----~~~--~~--~~~-~~~p~~------------l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~ 246 (380)
T 3ax6_A 202 ----EDA--NI--CDT-VIAPAR------------IEEKYSKIAREIATSVVEALEGVGIFGIEMF 246 (380)
T ss_dssp --------------CE-EEESCS------------SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred ----ccC--Ce--eEE-EECCCC------------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEE
Confidence 000 00 000 000100 00112357889999999999995 8888874
No 26
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.73 E-value=2.1e-05 Score=66.67 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=45.7
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCe
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
..+.||+|+||..+.| |..+.++.++++|... ....++++||||+ |.-|-|.|+|+.
T Consensus 185 ~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 246 (373)
T 3lwb_A 185 ERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMP 246 (373)
T ss_dssp HHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECT
T ss_pred HhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECC
Confidence 4578999999977764 6778899999888652 2234699999999 799999999875
No 27
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=97.65 E-value=3.8e-05 Score=64.54 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=43.7
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-----CCCCceeEeeeecCCCeEEEEEEECCe
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----NVPIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~~p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
.+.||+|+||..+.| |..+.++.++++|... ....++++||||+ |.-|-|.|+|+.
T Consensus 177 ~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 237 (364)
T 3i12_A 177 RLGLPLFVKPANQGS---SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGND 237 (364)
T ss_dssp HHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESS
T ss_pred hcCCCEEEEECCCCC---CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCC
Confidence 467999999986663 5778899999887652 1123699999998 488999999876
No 28
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=97.64 E-value=6.7e-05 Score=63.66 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=42.4
Q ss_pred HHHhhcCCCCceEeecccccCCccceeEEEEeCCCcCcCC----------------CCCCceeEeeeecCCCeEEEEEEE
Q 038140 13 QRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----------------NVPIPAVVQEYVNHSSTLFKFYVL 76 (159)
Q Consensus 13 ~~l~~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----------------~~p~p~V~QefInH~g~l~KVyVi 76 (159)
+.+..+.+.||+|+||..+. .|..|.++.++++|.+. ....++++||||+-.-.-.=+++.
T Consensus 137 ~~~~~~~~g~P~vvKp~~g~---gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~e~sv~~~~~ 213 (425)
T 3vot_A 137 ADLENRKLSYPLVVKPVNGF---SSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGPEFAIETLSI 213 (425)
T ss_dssp GGGTTCCCCSSEEEEESCC--------CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCSCEEEEEEEEE
T ss_pred HHHHHhhcCCcEEEEECCCC---CCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecCcEEEEEEEEe
Confidence 34556789999999997655 57889999999877541 113469999999844333444555
Q ss_pred CCeEEE
Q 038140 77 GENIFH 82 (159)
Q Consensus 77 Gd~v~~ 82 (159)
+..+.+
T Consensus 214 ~g~~~~ 219 (425)
T 3vot_A 214 QGNVHV 219 (425)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 555443
No 29
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=97.59 E-value=0.0001 Score=61.84 Aligned_cols=116 Identities=20% Similarity=0.232 Sum_probs=65.4
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCC-------CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCC
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPN 90 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn 90 (159)
..+.||+|+||..+. .|..|.++.++++|... ....++++||||+....-.-+++.+.++.+..... +
T Consensus 141 ~~~g~P~vvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g~e~sv~~~~~~g~~~~~~~~~--~ 215 (403)
T 4dim_A 141 ENLKLPVIVKATDLQ---GSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEGYEFGAQAFVYKNDVLFVMPHG--D 215 (403)
T ss_dssp HTSCSSEEEECSCC--------CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCSEEEEEEEEEETTEEEEEEEEE--E
T ss_pred hcCCCCEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCCcEEEEEEEEECCEEEEEEEec--c
Confidence 368899999998776 46789999999887652 11236899999995444444555566655443110 0
Q ss_pred CchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc--EeeeeeC
Q 038140 91 SGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT--IFGFDVV 159 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~--LfGfDvI 159 (159)
.. ..+ + ..+..-.+ .|. .......+.+.++|.++-+.+|+. .|++|++
T Consensus 216 ~~-----~~~-~-~~~~~~~~--~p~------------~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~ 265 (403)
T 4dim_A 216 ET-----YMS-H-TAVPVGHY--VPL------------DVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMI 265 (403)
T ss_dssp EE-----EES-S-SEEEEEEE--ESC------------CSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEE
T ss_pred ee-----ccC-C-CCcceeEE--eCC------------CCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEE
Confidence 00 000 0 00000000 010 001112467889999999999997 6899874
No 30
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=97.59 E-value=8.3e-05 Score=62.55 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=69.1
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCCC---CCceeEeeeecCCCeEEEEEEECC---eEEEEEecCCCCCc
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNV---PIPAVVQEYVNHSSTLFKFYVLGE---NIFHAVKKSTPNSG 92 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~---p~p~V~QefInH~g~l~KVyViGd---~v~~~~R~Slpn~~ 92 (159)
.+.||+|+||..+.+ .+..|.++.++++|...-. ..++++||||+ ++.-+-|.+++| .+.+. +..-+..
T Consensus 145 ~~g~P~vvKp~~~~~--~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~~--~~~e~~~ 219 (389)
T 3q2o_A 145 ELSYPSVLKTTTGGY--DGKGQVVLRSEADVDEARKLANAAECILEKWVP-FEKEVSVIVIRSVSGETKVF--PVAENIH 219 (389)
T ss_dssp HHCSSEEEEESSCCS--SSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEECTTCCEEEC--CCEEEEE
T ss_pred hcCCCEEEEeCCCCC--CCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEcCCCCEEEe--cCeeeEE
Confidence 467999999966542 3689999999988875310 13799999999 568888888865 22221 1000110
Q ss_pred hhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 93 ILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 93 ~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
.. + +. . ....|.. ......+.++++|.++-+.||+. ++++|++
T Consensus 220 ------~~---g-~~-~-~~~~p~~------------l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~ 263 (389)
T 3q2o_A 220 ------VN---N-IL-H-ESIVPAR------------ITEELSQKAIAYAKVLADELELVGTLAVEMF 263 (389)
T ss_dssp ------ET---T-EE-E-EEEESCS------------SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ------cC---C-ce-E-EEECCCC------------CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 00 1 11 0 0000100 01112467889999999999997 8999873
No 31
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.55 E-value=0.00014 Score=59.77 Aligned_cols=102 Identities=20% Similarity=0.279 Sum_probs=60.3
Q ss_pred cCCCCceEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeeecCCCeEEEEEEEC-CeEEEEEec-CCCCCchhh
Q 038140 18 AQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLG-ENIFHAVKK-STPNSGILM 95 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefInH~g~l~KVyViG-d~v~~~~R~-Slpn~~~~~ 95 (159)
..+.||+|+||..+.| |..+.++.+ ...++++||||+ |.-|-|.+++ +.+....+. ...+..
T Consensus 130 ~~~~~P~vvKP~~g~g---s~Gv~~v~~--------~~~~~lvEe~I~--G~e~sv~v~~g~~~~~~~~~~~~~~~~--- 193 (305)
T 3df7_A 130 RPLDCKFIIKPRTACA---GEGIGFSDE--------VPDGHIAQEFIE--GINLSVSLAVGEDVKCLSVNEQIINNF--- 193 (305)
T ss_dssp SCCSSSEEEEESSCC-------CBCCSS--------CCTTEEEEECCC--SEEEEEEEEESSSEEEEEEEEEEEETT---
T ss_pred ccCCCCEEEEeCCCCC---CCCEEEEec--------CCCCEEEEeccC--CcEEEEEEEeCCeEEEEEEeeEeccCc---
Confidence 3578999999987764 556666666 123799999999 7889999995 444333221 100000
Q ss_pred hhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHh-CCc-EeeeeeC
Q 038140 96 KSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTL-DLT-IFGFDVV 159 (159)
Q Consensus 96 ~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~l-GL~-LfGfDvI 159 (159)
...+ .+ .|. .......+.++++|+++-+.| |+. ++|+|++
T Consensus 194 -~~~g----~~-------~p~------------~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~ 235 (305)
T 3df7_A 194 -RYAG----AV-------VPA------------RISDEVKREVVEEAVRAVECVEGLNGYVGVDIV 235 (305)
T ss_dssp -EEEE----EE-------ESC------------CCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEE
T ss_pred -eecc----cc-------ccC------------CCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEE
Confidence 0000 00 000 001112468899999999999 964 7899974
No 32
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.40 E-value=0.00026 Score=58.70 Aligned_cols=53 Identities=26% Similarity=0.508 Sum_probs=36.3
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCCCCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||..+. .+..|.++.+++.+..... ++++||||. |.-|=|.+++|
T Consensus 123 ~ig~P~vvKp~~g~---g~~gv~~v~~~~~~~~~~~--~~~~ee~i~--g~e~sv~~~~d 175 (363)
T 4ffl_A 123 PSKPPYFVKPPCES---SSVGARIIYDDKDLEGLEP--DTLVEEYVE--GEVVSLEVVGD 175 (363)
T ss_dssp CSSSCEEEECSSCC---TTTTCEEEC------CCCT--TCEEEECCC--SEEEEEEEEEE
T ss_pred ecCCCEEEEECCCC---CCcCeEEeccHHHhhhhcc--chhhhhhcc--CcEEEEEEEEE
Confidence 46899999997655 4678999999998887654 689999996 56677777754
No 33
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=97.31 E-value=0.0003 Score=59.23 Aligned_cols=110 Identities=21% Similarity=0.340 Sum_probs=67.0
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC---CCCceeEeeeecCCCeEEEEEEE-CC--eEEEEEecCCCCCc
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN---VPIPAVVQEYVNHSSTLFKFYVL-GE--NIFHAVKKSTPNSG 92 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~---~p~p~V~QefInH~g~l~KVyVi-Gd--~v~~~~R~Slpn~~ 92 (159)
.+.||+|+||..+. ..++.+.++.++++|...- ...++++||||+ +..-|-|.++ +. .+.++ |..-+..
T Consensus 143 ~~g~P~vvKp~~gg--~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~-g~~E~sv~~~~~~~g~~~~~--~~~e~~~ 217 (377)
T 3orq_A 143 TLGYPFIVKTRFGG--YDGKGQVLINNEKDLQEGFKLIETSECVAEKYLN-IKKEVSLTVTRGNNNQITFF--PLQENEH 217 (377)
T ss_dssp HTCSSEEEEESSSC--CTTTTEEEECSTTSHHHHHHHHTTSCEEEEECCC-EEEEEEEEEEECGGGCEEEC--CCEEEEE
T ss_pred HcCCCEEEEeCCCC--CCCCCeEEECCHHHHHHHHHhcCCCcEEEEccCC-CCEEEEEEEEEeCCCCEEEE--CCEeEEE
Confidence 47899999996553 2467899999998886521 013799999998 3366777777 32 23221 1000000
Q ss_pred hhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 93 ILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 93 ~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
.. + +...+. .|. . -+. .+.++++|.++-+.||+. ++++|++
T Consensus 218 -------~~--g-~~~~~~--~Pa------------~-l~~-~~~~~~~a~~i~~~lg~~G~~~ve~~ 259 (377)
T 3orq_A 218 -------RN--Q-ILFKTI--VPA------------R-IDK-TAEAKEQVNKIIQSIHFIGTFTVEFF 259 (377)
T ss_dssp -------ET--T-EEEEEE--ESC------------S-SCC-HHHHHHHHHHHHTTSCCCEEEEEEEE
T ss_pred -------EC--C-EEEEEE--CCC------------C-CCH-HHHHHHHHHHHHHHCCCeEEEEEEEE
Confidence 00 1 110000 010 0 012 678999999999999998 8999873
No 34
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=97.23 E-value=0.00031 Score=59.76 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=66.5
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC----CCCCceeEeeeecCCCeEEEEEEECCeEEEEEecCCCCCchh
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----NVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKKSTPNSGIL 94 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~Slpn~~~~ 94 (159)
.+.||+|+||.... ..+..+.++.++++|... . ..++++||||+ ++.=+-|.++++.--+..-|..-+..
T Consensus 158 ~~g~P~VvKp~~gg--~~g~Gv~~v~~~~el~~a~~~~~-~~~~lvEe~i~-~~~E~sv~v~~~~~g~~~~p~~~~~~-- 231 (403)
T 3k5i_A 158 QLGYPLMLKSKTMA--YDGRGNFRVNSQDDIPEALEALK-DRPLYAEKWAY-FKMELAVIVVKTKDEVLSYPTVETVQ-- 231 (403)
T ss_dssp HHCSSEEEEESSSC--CTTTTEEEECSTTSHHHHHHHTT-TSCEEEEECCC-EEEEEEEEEEECSSCEEECCCEEEEE--
T ss_pred HhCCCEEEEeCCCC--cCCCCEEEECCHHHHHHHHHhcC-CCcEEEecCCC-CCeEEEEEEEEcCCCEEEeCCeeeEE--
Confidence 47799999996543 236689999999887652 2 24799999997 35777788876532111111100110
Q ss_pred hhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 95 MKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 95 ~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
.. +.... +. .|.. .......+.++++|.++-+.||+. ++++|++
T Consensus 232 ----~~---g~~~~-~~--~Pa~-----------~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~ 276 (403)
T 3k5i_A 232 ----ED---SICKL-VY--APAR-----------NVSDAINQKAQELARKAVAAFDGKGVFGVEMF 276 (403)
T ss_dssp ----ET---TEEEE-EE--ESCS-----------SCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEE
T ss_pred ----eC---CEEEE-EE--eCCC-----------CCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 00 11000 00 0100 000112457889999999999997 8888863
No 35
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.99 E-value=0.00061 Score=57.81 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=41.3
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC---------C--CCCceeEeeeecCCCeEEEEEEEC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL---------N--VPIPAVVQEYVNHSSTLFKFYVLG 77 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l---------~--~p~p~V~QefInH~g~l~KVyViG 77 (159)
.+.||+|+||.... .|..|.++.++++|... . ...++++||||+ |.-|-|.+++
T Consensus 139 ~~g~PvvvKp~~~~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~ 203 (412)
T 1vkz_A 139 KFSPPYVIKADGLA---RGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVV 203 (412)
T ss_dssp TSCSSEEEEESSCC---SSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEE
T ss_pred hcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEE
Confidence 58899999997766 46789999998776541 0 112799999999 6788888883
No 36
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=96.98 E-value=0.00063 Score=56.60 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=39.9
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC---------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN---------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~---------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||..+. .|..|.++.++++|...- ...++++||||+. |.-+-|.++++
T Consensus 146 ~~g~P~vvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~ 210 (391)
T 1kjq_A 146 DIGYPCIVKPVMSS---SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSA 210 (391)
T ss_dssp HHCSSEEEEESCC------CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEE
T ss_pred hcCCCEEEEeCCCC---CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEe
Confidence 46799999997554 567899999998776420 1237999999985 66777777753
No 37
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=96.92 E-value=0.0018 Score=54.70 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=40.3
Q ss_pred CCCCceEeecccccCCccceeEEEEeC--CCcCcCCCCCCceeEeeeecCCCeEEEEEEEC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFG--TEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLG 77 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~--~~~L~~l~~p~p~V~QefInH~g~l~KVyViG 77 (159)
.+.||+|+||... |+ .++.|.++.+ +++|...-.. ++++||||+. +.=+=|-+++
T Consensus 112 ~~G~P~VvKp~~~-G~-~GkGv~~v~~~~~~el~~a~~~-~vivEe~I~~-~~Eisv~v~~ 168 (355)
T 3eth_A 112 RLGELAIVKRRTG-GY-DGRGQWRLRANETEQLPAECYG-ECIVEQGINF-SGEVSLVGAR 168 (355)
T ss_dssp HHCSEEEEEESSS-CC-TTTTEEEEETTCGGGSCGGGTT-TEEEEECCCC-SEEEEEEEEE
T ss_pred HcCCCEEEEecCC-CC-CCCeEEEEcCCCHHHHHHHhhC-CEEEEEccCC-CcEEEEEEEE
Confidence 4679999999653 23 5799999999 9888763122 5999999985 4555566663
No 38
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=96.89 E-value=0.0014 Score=55.31 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=40.6
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC----C---CCCceeEeeeecCCCeEEEEEEEC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N---VPIPAVVQEYVNHSSTLFKFYVLG 77 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~---~p~p~V~QefInH~g~l~KVyViG 77 (159)
.+.||+|+||..+. .|..+.++.++++|... . ...++++||||+ |.-|-|.+++
T Consensus 134 ~~~~P~vvKp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~ 194 (417)
T 2ip4_A 134 EVGVPVVVKDSGLA---AGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALT 194 (417)
T ss_dssp HHCSSEEEECTTSC---SSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEE
T ss_pred HcCCCEEEEECCCC---CCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEE
Confidence 36799999997665 46778899998776541 1 114799999999 6788888884
No 39
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=4.4e-05 Score=52.34 Aligned_cols=46 Identities=15% Similarity=0.416 Sum_probs=34.0
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC----------C-CCceeEeeeecCC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN----------V-PIPAVVQEYVNHS 67 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~----------~-p~p~V~QefInH~ 67 (159)
.+.||+|+||....| +..+.++.++++|...- . ..++++||||+..
T Consensus 43 ~~~~P~vvKp~~~~~---~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 43 EIGYPVMIKASAGGG---GKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNP 99 (108)
T ss_dssp HHCSSEEEEETTSCC---TTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSS
T ss_pred hcCCCEEEEECCCCC---CccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCC
Confidence 478999999987654 56788899987765420 1 2469999999853
No 40
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=96.83 E-value=0.0022 Score=54.77 Aligned_cols=56 Identities=16% Similarity=0.344 Sum_probs=41.9
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCCC-----------CCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNV-----------PIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~-----------p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||..+. .+..|.++.++++|...-. ..++++||||+.. .-+-|.+++|
T Consensus 154 ~~g~PvvvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~d 220 (446)
T 3ouz_A 154 EIGYPVILKAAAGG---GGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP-RHIEVQVIGD 220 (446)
T ss_dssp HHCSSEEEEETTCC---TTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-EEEEEEEEEC
T ss_pred HhCCCEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-cEEEEEEEEc
Confidence 47799999997665 5778999999988765210 2379999999853 5666777754
No 41
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=96.81 E-value=0.0013 Score=55.76 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=36.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC----C-----CCCceeEeeeecCCCeEEEEEEEC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N-----VPIPAVVQEYVNHSSTLFKFYVLG 77 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~-----~p~p~V~QefInH~g~l~KVyViG 77 (159)
.+.||+|+||..+. .|..|.++.++++|... . ...++++||||+. |.-|-|.+++
T Consensus 154 ~~g~P~vvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~ 217 (433)
T 2dwc_A 154 KIGYPCHTKAIMSS---SGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVR 217 (433)
T ss_dssp HHCSSEEEEECCC---------EEECSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEE
T ss_pred hcCCCEEEEECCCc---CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEe
Confidence 36799999997554 57889999999877542 1 1247999999986 6677777764
No 42
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=96.79 E-value=0.001 Score=57.05 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=39.1
Q ss_pred CCCceEeecccccCCccceeEEEEeCCCcCcCCC---CCCceeEeeeecCCCeEEEEEEEC
Q 038140 20 LSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN---VPIPAVVQEYVNHSSTLFKFYVLG 77 (159)
Q Consensus 20 l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~---~p~p~V~QefInH~g~l~KVyViG 77 (159)
+ ||+|+||.. .|+ .+..+.++.++++|...- ...++++||||+. +.=+-|.+++
T Consensus 171 ~-~P~VvKp~~-~g~-~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~ 227 (419)
T 4e4t_A 171 V-LPGILKTAR-LGY-DGKGQVRVSTAREARDAHAALGGVPCVLEKRLPL-KYEVSALIAR 227 (419)
T ss_dssp T-CSEEEEESS-SCC-TTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEE
T ss_pred c-CCEEEEecC-CCC-CCCceEEECCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEE
Confidence 7 999999952 222 578899999998775521 1247999999985 5556677774
No 43
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=96.73 E-value=0.0016 Score=57.64 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=67.1
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-------CCCCceeEeeeecCCCeEEEEEEECCe----EEEEEec-
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------NVPIPAVVQEYVNHSSTLFKFYVLGEN----IFHAVKK- 86 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~~p~p~V~QefInH~g~l~KVyViGd~----v~~~~R~- 86 (159)
.+.||+|+||..+.| |..|.++.++++|... ....++++||||.. +.-+-|.+++|. +.+..|-
T Consensus 232 ~~g~PvVvKp~~g~g---g~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g-~~e~sv~vl~d~~G~vv~l~~~~~ 307 (554)
T 1w96_A 232 RIGFPVMIKASEGGG---GKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR-ARHLEVQLLADQYGTNISLFGRDC 307 (554)
T ss_dssp HHCSSEEEEETTCCT---TTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEECTTSCEEEEEEEEE
T ss_pred HcCCCEEEEECCCCC---CceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeeeee
Confidence 478999999977764 6789999998877652 01237999999984 466777777652 3333332
Q ss_pred CCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCC-cEeeeeeC
Q 038140 87 STPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDL-TIFGFDVV 159 (159)
Q Consensus 87 Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL-~LfGfDvI 159 (159)
|+-+.. . ..+.. .|.. . ......+.+.++|..+-+.+|+ ..+++|++
T Consensus 308 ~~~~~~-------~---k~~~~-----~P~~-----~------l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~ 355 (554)
T 1w96_A 308 SVQRRH-------Q---KIIEE-----APVT-----I------AKAETFHEMEKAAVRLGKLVGYVSAGTVEYL 355 (554)
T ss_dssp EEEETT-------E---EEEEE-----ESCC-----S------SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred eeEeec-------c---ceeee-----CCCc-----C------CCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Confidence 211000 0 11110 0100 0 0011245788899999999999 57777763
No 44
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=96.72 E-value=0.0015 Score=55.72 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=40.6
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||..+.| |..+.++.++++|...- ...++++||||+. +.-|-|.++++
T Consensus 151 ~~g~PvvvKp~~g~g---g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~~~~~ 217 (449)
T 2w70_A 151 RIGYPVIIKASGGGG---GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN-PRHVEIQVLAD 217 (449)
T ss_dssp HHCSSEEEEETTCCT---TTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS-CEEEEEEEEEC
T ss_pred HhCCcEEEEECCCCC---CCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC-CeEEEEEEEEc
Confidence 367999999987764 56788999987765421 0237999999974 45677777753
No 45
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=96.71 E-value=0.0071 Score=52.71 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=65.8
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-----------------CCCCceeEeeeecCCC------------e
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----------------NVPIPAVVQEYVNHSS------------T 69 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----------------~~p~p~V~QefInH~g------------~ 69 (159)
.+.||+|+||..+.| |..|.++.++++|.+. ....++++||||...- .
T Consensus 172 ~lg~PvVVKP~~g~g---g~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~ 248 (474)
T 3vmm_A 172 EIGTPLILKPTYLAS---SIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYI 248 (474)
T ss_dssp HSCSSEEEEESSCCT---TTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEE
T ss_pred HcCCCEEEEECCCCc---CceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeeccccccee
Confidence 588999999987764 5678899999887542 1124699999999543 2
Q ss_pred EEEEEEECCeEEEE---EecCCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHH
Q 038140 70 LFKFYVLGENIFHA---VKKSTPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLA 146 (159)
Q Consensus 70 l~KVyViGd~v~~~---~R~Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr 146 (159)
-.-.++.+.++.++ .|....++ . ..+.. .|. .. .....+.+.++|.++.
T Consensus 249 sv~~v~~dg~~~~v~i~~~~~~~~~--------~---~~~~~-----~Pa------~l------~~~~~~~l~~~a~~~~ 300 (474)
T 3vmm_A 249 SIEGIMADGEYFPIAIHDKTPQIGF--------T---ETSHI-----TPS------IL------DEEAKKKIVEAAKKAN 300 (474)
T ss_dssp EEEEEEETTEEEEEEEEEECCCBTT--------B---CCEEE-----ESC------CC------CHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCeEEEEEEEeeccCCCc--------c---ceEEE-----ECC------CC------CHHHHHHHHHHHHHHH
Confidence 33445556554433 23211110 0 01110 010 00 0112457889999999
Q ss_pred HHhCCcEee--eeeC
Q 038140 147 KTLDLTIFG--FDVV 159 (159)
Q Consensus 147 ~~lGL~LfG--fDvI 159 (159)
+.+|+.-.+ +|++
T Consensus 301 ~alG~~g~~~~vef~ 315 (474)
T 3vmm_A 301 EGLGLQNCATHTEIK 315 (474)
T ss_dssp HHHTCCSEEEEEEEE
T ss_pred HHcCCCCccEEEEEE
Confidence 999998666 7763
No 46
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=96.55 E-value=0.0051 Score=54.74 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=65.7
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC-------CCCceeEeeeecCCCeEEEEEEECCe----EEEEEec-
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-------VPIPAVVQEYVNHSSTLFKFYVLGEN----IFHAVKK- 86 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-------~p~p~V~QefInH~g~l~KVyViGd~----v~~~~R~- 86 (159)
.+.||+|+||..+.| +..|.++.++++|...- ...++++|+||.. +.-+-|-+++|. +.+..|-
T Consensus 226 ~igyPvVVKp~~ggG---G~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g-~rei~V~vl~d~~G~vv~l~~rd~ 301 (540)
T 3glk_A 226 RIGFPLMIKASEGGG---GKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILADQYGNAVSLFGRDC 301 (540)
T ss_dssp HHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSS-EEEEEEEEEECTTSCEEEEEEEEE
T ss_pred hcCCcEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeceee
Confidence 578999999977764 67899999999886521 1236999999964 467778888763 3433442
Q ss_pred CCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 87 STPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 87 Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
|+.... . ..+.. .|. .. ......+.+.++|.++.+.+|+. .+++|++
T Consensus 302 s~qr~~-------~---k~ie~-----~Pa-----~~------l~~~~~~~l~~~a~~~~~alG~~G~~~VEf~ 349 (540)
T 3glk_A 302 SIQRRH-------Q---KIVEE-----APA-----TI------APLAIFEFMEQCAIRLAKTVGYVSAGTVEYL 349 (540)
T ss_dssp EEC----------C---CSEEE-----ESC-----TT------SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred eeeecc-------c---ceEEe-----cCC-----CC------CCHHHHHHHHHHHHHHHHHcCCccceEEEEE
Confidence 221100 0 11110 010 00 01122467888999999999994 6667753
No 47
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=96.55 E-value=0.0037 Score=57.02 Aligned_cols=111 Identities=12% Similarity=0.175 Sum_probs=63.5
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC----CC-------CCceeEeeeecCCCeEEEEEEECC----eEEEE
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----NV-------PIPAVVQEYVNHSSTLFKFYVLGE----NIFHA 83 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~~-------p~p~V~QefInH~g~l~KVyViGd----~v~~~ 83 (159)
.+.||+|+||..+.| +..|.++.++++|... .. ..++++|+||+.. .-+-|-|++| .+.+.
T Consensus 176 ~igyPvvvKp~~G~G---g~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-reiev~v~~d~~G~vv~l~ 251 (675)
T 3u9t_A 176 RIGYPVLLKAAAGGG---GKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-RHVEIQVFADRHGHCLYLN 251 (675)
T ss_dssp HSCSSBCCBCCC---------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-BCEEEEEEECSSSCEEEEE
T ss_pred hCCCcEEEEECCCCC---CccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-cEEEEEEEEcCCCCEEEEe
Confidence 478999999987774 6789999999887652 10 2369999999864 4455556644 34444
Q ss_pred Eec-CCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCC-cEeeeeeC
Q 038140 84 VKK-STPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDL-TIFGFDVV 159 (159)
Q Consensus 84 ~R~-Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL-~LfGfDvI 159 (159)
.|. |+-... . ..+... |. . .......+.+.++|.++.+.+|+ ..+++|++
T Consensus 252 ~rd~s~qr~~-------q---k~ie~~-----Pa-----~------~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~ 303 (675)
T 3u9t_A 252 ERDCSIQRRH-------Q---KVVEEA-----PA-----P------GLGAELRRAMGEAAVRAAQAIGYVGAGTVEFL 303 (675)
T ss_dssp EEECCCBSSS-------S---BCEEEE-----SC-----S------SCCHHHHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred ccccceeecc-------c---eEEEEC-----CC-----C------CCCHHHHHHHHHHHHHHHHHcCCccceEEEEE
Confidence 553 321110 0 111110 00 0 00112246788899999999999 47778764
No 48
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=96.52 E-value=0.0017 Score=53.65 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=24.0
Q ss_pred CCCCceEeeccccc-CCccceeEEEEeCCCcCcCCC----CCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVAC-GTADSHSMAIVFGTEDFKDLN----VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~-Gs~~sH~M~lv~~~~~L~~l~----~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||..+. |+ ..+.++.++++|...- ...++++||||+. |.-|-|.+++|
T Consensus 124 ~~~~P~vvKp~~~~~~g---~Gv~~v~~~~el~~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d 184 (365)
T 2z04_A 124 SFKLPVVIKAEKLGYDG---KGQYRIKKLEDANQVVKNHDKEESFIIEEFVKF-EAEISCIGVRD 184 (365)
T ss_dssp ----CEEEECC---------------------------------CEEEECCCC-SEEEEEEEEEC
T ss_pred hcCCCEEEEEcCCCcCC---CCeEEECCHHHHHHHHHHhccCCCEEEEccCCC-CEEEEEEEEEC
Confidence 47899999998776 54 5788899988877632 1236899999986 77899998864
No 49
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.50 E-value=0.0029 Score=53.89 Aligned_cols=56 Identities=14% Similarity=0.358 Sum_probs=40.9
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||..+.| |..+.++.++++|...- ...++++||||+. +.-|-|.++++
T Consensus 149 ~~g~PvvvKp~~g~g---g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 215 (451)
T 1ulz_A 149 EIGYPVLLKATAGGG---GRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIEN-PKHIEYQVLGD 215 (451)
T ss_dssp HHCSSEEEEECSSSS---CCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCS-CEEEEEEEEEC
T ss_pred HcCCCEEEEECCCCC---CccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccC-CeEEEEEEEEc
Confidence 467999999977664 67888999987765420 0237999999985 35677777754
No 50
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=96.48 E-value=0.0024 Score=60.92 Aligned_cols=112 Identities=16% Similarity=0.314 Sum_probs=58.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-------CCCCceeEeeeecCCCeEEEEEEE--CCeEEEEE--ec-
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------NVPIPAVVQEYVNHSSTLFKFYVL--GENIFHAV--KK- 86 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~~p~p~V~QefInH~g~l~KVyVi--Gd~v~~~~--R~- 86 (159)
.+.||+|+||....| +..|.++.++++|... ....|+++|+||+.. .=+-|-++ |+.+.+.. +.
T Consensus 707 ~ig~PvvVKP~~~~g---G~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~-~E~~V~~l~d~~~v~~~~i~e~~ 782 (1073)
T 1a9x_A 707 EIGYPLVVRASYVLG---GRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDA-VEVDVDAICDGEMVLIGGIMEHI 782 (1073)
T ss_dssp HHCSSEEEEC----------CEEEECSHHHHHHHHHHCC--------EEEBCCTTC-EEEEEEEEECSSCEEEEEEEEES
T ss_pred HcCCCEEEEECCCCC---CCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-cEEEEEEEEECCeEEEEeeEEEE
Confidence 477999999987764 6789999999877652 112479999999865 24444454 43333211 11
Q ss_pred CCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCC-cEeeeeeC
Q 038140 87 STPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDL-TIFGFDVV 159 (159)
Q Consensus 87 Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL-~LfGfDvI 159 (159)
--.+.. + + ++....|. .. ......+.++++++.+.+.||+ .++++|++
T Consensus 783 ~~~g~~-----~-g--------d~~~~~P~----~~-------l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~ 831 (1073)
T 1a9x_A 783 EQAGVH-----S-G--------DSACSLPA----YT-------LSQEIQDVMRQQVQKLAFELQVRGLMNVQFA 831 (1073)
T ss_dssp SCTTSC-----G-G--------GCCEEESC----SS-------CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eccCCc-----c-C--------CceEEecC----CC-------CCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Confidence 000110 0 0 00000110 00 0011246788999999999999 78888863
No 51
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=96.37 E-value=0.0088 Score=53.92 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=69.1
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC-------CCCceeEeeeecCCCeEEEEEEECCe----EEEEEec-
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-------VPIPAVVQEYVNHSSTLFKFYVLGEN----IFHAVKK- 86 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-------~p~p~V~QefInH~g~l~KVyViGd~----v~~~~R~- 86 (159)
.+.||+|+||..+.| +..|.++.++++|...- ...++++|+||+. +.-+-|-|++|. +.+..|-
T Consensus 242 ~iGyPvVVKp~~GgG---GkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g-~rei~V~vl~D~~G~vv~l~~rd~ 317 (587)
T 3jrx_A 242 RIGFPLMIKASEGGG---GKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILADQYGNAVSLFGRDC 317 (587)
T ss_dssp HHCSSEEEEETTCCS---SSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEECSSSCEEEEEEEEE
T ss_pred hcCCeEEEEeCCCCC---CCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeeeec
Confidence 578999999977774 67899999999886521 1247999999974 477788888763 3433442
Q ss_pred CCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 87 STPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 87 Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
|+.... . ..+.. .|.. . ......+.+.++|.++.+.+|+. .+++|++
T Consensus 318 siqrr~-------q---k~ie~-----aPa~-----~------l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl 365 (587)
T 3jrx_A 318 SIQRRH-------Q---KIVEE-----APAT-----I------APLAIFEFMEQCAIRLAKTVGYVSAGTVEYL 365 (587)
T ss_dssp EEESSS-------C---EEEEE-----ESCC-----S------SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred cccccc-------c---ceeEe-----cCCC-----C------CCHHHHHHHHHHHHHHHHHcCCcceeEEEEE
Confidence 221100 0 11110 0100 0 01122467888999999999994 6667753
No 52
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=96.35 E-value=0.0055 Score=55.98 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=36.0
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCCC-----------CCceeEeeeecCCCeEEEEEEECCe----EEEE
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNV-----------PIPAVVQEYVNHSSTLFKFYVLGEN----IFHA 83 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~-----------p~p~V~QefInH~g~l~KVyViGd~----v~~~ 83 (159)
.+.||+|+||..+. .+..|.++.++++|...-. ..++++|+||... .-+-|-+++|. +...
T Consensus 150 ~igyPvVvKp~~gg---ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-rei~V~v~~d~~G~vv~l~ 225 (681)
T 3n6r_A 150 QIGYPVMIKASAGG---GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-RHIEIQVLCDSHGNGIYLG 225 (681)
T ss_dssp --------------------------------------------------------CCSC-EEEEEEEECCSSSCCEEEE
T ss_pred hcCCcEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-cEEEEEEEEeCCCCEEEEe
Confidence 57899999998766 4788999999988876311 1369999999863 67778888763 3444
Q ss_pred Eec-CCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 84 VKK-STPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 84 ~R~-Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
.|- |+..-. . ..+.. .|. .. ......+.+.++|.++.+.+|+. .+++|++
T Consensus 226 ~rd~s~qr~~-------~---k~~e~-----~Pa-----~~------l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~ 277 (681)
T 3n6r_A 226 ERECSIQRRN-------Q---KVVEE-----APS-----PF------LDEATRRAMGEQAVALAKAVGYASAGTVEFI 277 (681)
T ss_dssp EEECCCEETT-------E---ECEEE-----ESC-----SS------CCHHHHHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred eeecceeccC-------c---cEEEe-----cCC-----CC------CCHHHHHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 443 321100 0 11110 000 00 01112457788999999999996 5667763
No 53
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=96.31 E-value=0.0055 Score=52.15 Aligned_cols=56 Identities=7% Similarity=0.225 Sum_probs=40.5
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||..+. .+..|.++.++++|...- ...++++||||+. +.-|-|.++++
T Consensus 149 ~~g~PvvvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 215 (451)
T 2vpq_A 149 KIGYPVIIKATAGG---GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIEN-FRHIEIQIVGD 215 (451)
T ss_dssp HHCSSEEEEETTCC---TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCS-EEEEEEEEEEC
T ss_pred hcCCcEEEEECCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCC-CeEEEEEEEEc
Confidence 46799999997766 467889999987765420 1237999999985 35666766653
No 54
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=96.27 E-value=0.0098 Score=56.77 Aligned_cols=115 Identities=14% Similarity=0.300 Sum_probs=68.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-------CCCCceeEeeeecCCCeEEEEEEECCe---EEEEEecCC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-------NVPIPAVVQEYVNHSSTLFKFYVLGEN---IFHAVKKST 88 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-------~~p~p~V~QefInH~g~l~KVyViGd~---v~~~~R~Sl 88 (159)
.+.||+|+||..+.| +..+.++.++++|... ....++++||||.. ..-|-|-|++|. +..+ +++
T Consensus 161 ~ig~PvVvKp~~~~G---g~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G-~~E~~v~v~~d~~g~~v~~--~~~ 234 (1073)
T 1a9x_A 161 DVGFPCIIRPSFTMG---GSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIG-WKEYEMEVVRDKNDNCIIV--CSI 234 (1073)
T ss_dssp HHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTT-SEEEEEEEEECTTCCEEEE--EEE
T ss_pred HcCCCEEEEECCCCC---CCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCC-CeEEEEEEEEeCCCCEEEE--EEE
Confidence 467999999988776 5678899999877653 11236999999983 367778888763 2221 111
Q ss_pred CCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc--EeeeeeC
Q 038140 89 PNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT--IFGFDVV 159 (159)
Q Consensus 89 pn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~--LfGfDvI 159 (159)
-++.+. ....+ ..+.. .|.. . ......+.++++|..+-+.+|+. .+++|++
T Consensus 235 e~~dp~-~v~~g---~s~~~-----~Pa~-----~------l~~~~~~~l~~~a~~i~~~lg~~~G~~~vdf~ 287 (1073)
T 1a9x_A 235 ENFDAM-GIHTG---DSITV-----APAQ-----T------LTDKEYQIMRNASMAVLREIGVETGGSNVQFA 287 (1073)
T ss_dssp EESSCT-TSCGG---GSCEE-----ESCC-----S------CCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEE
T ss_pred ecccCC-ccccC---cEEEE-----ecCC-----C------CCHHHHHHHHHHHHHHHHHcCcccCceEEEEE
Confidence 111100 00001 11110 0100 0 00112467889999999999998 9999873
No 55
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=96.16 E-value=0.0027 Score=52.56 Aligned_cols=112 Identities=11% Similarity=0.136 Sum_probs=64.9
Q ss_pred cCCCCceEeeccccc-CCccceeEEEEeCCCcCcCC----CCCCceeEeeeecCCCeEEEEEEECC---eEEEEEecCCC
Q 038140 18 AQLSLPCIVKPQVAC-GTADSHSMAIVFGTEDFKDL----NVPIPAVVQEYVNHSSTLFKFYVLGE---NIFHAVKKSTP 89 (159)
Q Consensus 18 ~~l~fP~I~Kp~~A~-Gs~~sH~M~lv~~~~~L~~l----~~p~p~V~QefInH~g~l~KVyViGd---~v~~~~R~Slp 89 (159)
..+.||+|+||..+. | +..+.++.++++|... . ..++++||||+. |.-|-|.+++| .+.+..+. -
T Consensus 128 ~~~g~P~vvKp~~~~~~---g~Gv~~v~~~~el~~~~~~~~-~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~~~~--~ 200 (369)
T 3aw8_A 128 KRVGLPALLKTRRGGYD---GKGQALVRTEEEALEALKALG-GRGLILEGFVPF-DREVSLLAVRGRTGEVAFYPLV--E 200 (369)
T ss_dssp TTTCSSEEEEECCC---------EEEECSHHHHHHHHTTTC-SSSEEEEECCCC-SEEEEEEEEECTTSCEEECCCE--E
T ss_pred HHcCCCEEEEEcCCCCC---cceEEEECCHHHHHHHHHhcC-CCcEEEEEcCCC-CEEEEEEEEECCCCCEEEECCe--e
Confidence 357899999997766 5 4678899998776542 1 237999999986 67888888875 33322110 0
Q ss_pred CCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 90 NSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 90 n~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
+. ... . .++.. ..|.. .. .....+.++++|..+-+.||++ .+++|++
T Consensus 201 ~~-------~~~--~--~~~~~-~~p~~-----~l------~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~ 248 (369)
T 3aw8_A 201 NR-------HWG--G--ILRLS-LAPAP-----GA------SEALQKKAEAYALRAMEALDYVGVLALEFF 248 (369)
T ss_dssp EE-------EET--T--EEEEE-EESCT-----TC------CHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred ee-------eeC--C--EEEEE-ECCCC-----CC------CHHHHHHHHHHHHHHHHHCCCeeEEEEEEE
Confidence 00 000 0 11110 00100 00 0112356788999999999997 8888863
No 56
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=95.99 E-value=0.0057 Score=52.25 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=41.5
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||..+.| |..|.++.++++|...- ...++++||||+. +.-+-|.++++
T Consensus 155 ~~g~PvvvKp~~g~g---g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 221 (461)
T 2dzd_A 155 AHGYPIIIKAALGGG---GRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN-PKHIEVQILGD 221 (461)
T ss_dssp HHCSCEEEEESTTCS---SSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS-CEEEEEEEEEC
T ss_pred hcCCcEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC-CeEEEEEEEEc
Confidence 467999999987764 67789999998876420 1237999999984 45677777764
No 57
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=95.91 E-value=0.0027 Score=53.50 Aligned_cols=53 Identities=13% Similarity=0.321 Sum_probs=40.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-----C------CCCceeEeeeecCCCeEEEEEEE
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----N------VPIPAVVQEYVNHSSTLFKFYVL 76 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~------~p~p~V~QefInH~g~l~KVyVi 76 (159)
.+.||+|+||.... .|..+.++.+++++... . ...++++||||+ |.-|-|.++
T Consensus 135 ~~~~P~vvKp~~~~---~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~ 198 (422)
T 2xcl_A 135 EKGAPIVIKADGLA---AGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAF 198 (422)
T ss_dssp HHCSSEEEEESSCG---GGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEE
T ss_pred hcCCCEEEEeCCCC---CCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEE
Confidence 36799999997765 56789999998766541 0 013799999999 678888877
No 58
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=95.81 E-value=0.0028 Score=53.45 Aligned_cols=58 Identities=16% Similarity=0.288 Sum_probs=41.6
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC-----C------CCCceeEeeeecCCCeEEEEEEE--CCeEE
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL-----N------VPIPAVVQEYVNHSSTLFKFYVL--GENIF 81 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~------~p~p~V~QefInH~g~l~KVyVi--Gd~v~ 81 (159)
.+.||+|+||..+. .|..|.++.++++|... . ...++++||||+ |.-|-|.++ |+.++
T Consensus 135 ~~~~PvvvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~ 205 (424)
T 2yw2_A 135 KVGAPIVVKADGLA---AGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDRYV 205 (424)
T ss_dssp HHCSSEEEEESSCC---TTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEE
T ss_pred HcCCcEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCEEE
Confidence 36799999997765 46789999998776541 0 013799999999 566777666 45443
No 59
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=95.81 E-value=0.0043 Score=51.87 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=24.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCCCC--CceeEeeeec
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVP--IPAVVQEYVN 65 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~p--~p~V~QefIn 65 (159)
.+.||+|+||..+. .|+..+++.+ ++|...-.. .++++||||+
T Consensus 123 ~i~~PviVKp~~g~---ggkG~~~v~~-eel~~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 123 KPDELYFVRIEGPR---GGSGHFIVEG-SELEERLSTLEEPYRVERFIP 167 (320)
T ss_dssp CSSCCEEEECC---------------C-EECSCCCC----CCEEEECCC
T ss_pred CcCCcEEEEECCCC---CCCCEEEECh-HHHHHHHHhcCCCEEEEeeec
Confidence 47899999996665 5899999999 998764211 3699999999
No 60
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=95.74 E-value=0.021 Score=55.22 Aligned_cols=56 Identities=16% Similarity=0.379 Sum_probs=36.6
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC----CC-------CCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----NV-------PIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~~-------p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||..+. .|..|.++.++++|... .. ..++++|+||.. ..-+-|-++||
T Consensus 153 ~iGyPvVVKP~~Gg---Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G-~reieV~vl~d 219 (1150)
T 3hbl_A 153 EAGFPLMIKATSGG---GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDN-PKHIEVQVIGD 219 (1150)
T ss_dssp GTCSSEEEECCC----------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSS-CEEEEEEEEEC
T ss_pred HcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCC-CcEEEEEEEEe
Confidence 58899999998776 46889999999888652 10 236899999975 35666777765
No 61
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=95.61 E-value=0.0049 Score=49.64 Aligned_cols=44 Identities=32% Similarity=0.346 Sum_probs=30.7
Q ss_pred CCCceEeecccccCCccceeEEEEeCCCcCcCC----------CCCCceeEeeeecC
Q 038140 20 LSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----------NVPIPAVVQEYVNH 66 (159)
Q Consensus 20 l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----------~~p~p~V~QefInH 66 (159)
+.||+|+||..+.| |..+.++.++++|... ....++++||||+-
T Consensus 125 l~~P~vvKP~~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G 178 (334)
T 2r85_A 125 IEKPVIVKPHGAKG---GKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG 178 (334)
T ss_dssp CCSCEEEEECC-------TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC
T ss_pred cCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC
Confidence 56999999987774 5678899998776542 11147999999983
No 62
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=95.52 E-value=0.0085 Score=51.20 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=37.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC----C-------CCCceeEeeeecCCCeEEEEEEE
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N-------VPIPAVVQEYVNHSSTLFKFYVL 76 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~-------~p~p~V~QefInH~g~l~KVyVi 76 (159)
.+.||+|+||..+. .+..+.++.+++++... . ...++++||||+ |.-|-|.++
T Consensus 156 ~~~~PvVvKp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~ 219 (451)
T 2yrx_A 156 QKGAPIVIKADGLA---AGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAF 219 (451)
T ss_dssp HHCSSEEEEECC-------CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEE
T ss_pred hcCCcEEEEeCCCC---CCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEE
Confidence 36799999998776 46788999998766541 0 114799999999 667777776
No 63
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=95.47 E-value=0.013 Score=57.13 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=33.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCC-----------CCCceeEeeeecCCCeEEEEEEECCe----EEEE
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------VPIPAVVQEYVNHSSTLFKFYVLGEN----IFHA 83 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~p~p~V~QefInH~g~l~KVyViGd~----v~~~ 83 (159)
.+.||+|+||..+. .+..|.++.++++|...- ...++++||||.. +.-+-|.+++|. +.+.
T Consensus 178 ~iGyPvVVKP~~Gg---GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-~rEisV~vl~Dg~g~vv~l~ 253 (1236)
T 3va7_A 178 KLEYPVMVKSTAGG---GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-ARHVEIQMMGDGFGKAIAIG 253 (1236)
T ss_dssp ----------------------------------------------------------C-CEEEEEEEEEESSSCEEEEE
T ss_pred HcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-CeEEEEEEEecCCceEEEEe
Confidence 57899999997666 477899999998876531 1236899999986 566777777652 3332
Q ss_pred Eec-CCCCCchhhhhhccCCccceEeccCCCCCccccccCCCCCccccCCCCHHHHHHHHHHHHHHhCCc-EeeeeeC
Q 038140 84 VKK-STPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLT-IFGFDVV 159 (159)
Q Consensus 84 ~R~-Slpn~~~~~~~~~~~~~~~i~Fds~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~Lr~~lGL~-LfGfDvI 159 (159)
.|- |+.+.. . ..+.. .|. .. ......+.+.++|..+.+.+|+. .+++|++
T Consensus 254 ~rd~s~qr~~-------~---k~~e~-----~Pa-----~~------l~~~~~~~l~~~a~~~~~alg~~G~~~VEfi 305 (1236)
T 3va7_A 254 ERDCSLQRRN-------Q---KVIEE-----TPA-----PN------LPEATRAKMRAASERLGSLLKYKCAGTVEFI 305 (1236)
T ss_dssp EEEEEEEETT-------E---EEEEE-----ESC-----SS------CCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eeeeeeeecC-------c---ceEEE-----cCC-----CC------CCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Confidence 331 211000 0 11111 000 00 00112457888999999999996 7777763
No 64
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=95.25 E-value=0.007 Score=52.07 Aligned_cols=55 Identities=16% Similarity=0.313 Sum_probs=40.7
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC----C-------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N-------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~-------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||.... .+..+.++.+++++... . ...++++||||+ |.-|-|.++.|
T Consensus 156 ~~g~PvVvKp~~~~---gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~d 221 (442)
T 3lp8_A 156 KHKLPLVVKADGLA---QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVD 221 (442)
T ss_dssp HSCSSEEEEESSCC---TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEE
T ss_pred HcCCcEEEeECCCC---CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEEC
Confidence 47899999997554 57789999998776441 0 113699999999 67777777743
No 65
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=95.23 E-value=0.018 Score=55.65 Aligned_cols=56 Identities=14% Similarity=0.283 Sum_probs=12.5
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCCCC-----------CCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNV-----------PIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~~-----------p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||..+.| +..|.++.++++|...-. ..++++||||.. +.-+-|.+++|
T Consensus 169 ~igyPvVVKp~~g~G---G~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-g~EisV~vl~D 235 (1165)
T 2qf7_A 169 AIGYPVMLKASWGGG---GRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-ARHVESQILGD 235 (1165)
T ss_dssp ------------------------------------------------------CCCSS-EEEEEEEEEEC
T ss_pred hcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-CcEEEEEEEEc
Confidence 578999999987774 678999999988765310 136899999985 56678888876
No 66
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=95.23 E-value=0.0059 Score=52.12 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=39.3
Q ss_pred CCCCc-eEeecccccCCccceeEEEEeCCCcCcCC-----C------CCCceeEeeeecCCCeEEEEEEEC
Q 038140 19 QLSLP-CIVKPQVACGTADSHSMAIVFGTEDFKDL-----N------VPIPAVVQEYVNHSSTLFKFYVLG 77 (159)
Q Consensus 19 ~l~fP-~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l-----~------~p~p~V~QefInH~g~l~KVyViG 77 (159)
.+.|| +|+||..+. .|..+.++.++++|... . ...++++||||+ |.-|-|.+++
T Consensus 161 ~~g~P~vvvKp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~ 226 (452)
T 2qk4_A 161 SADFPALVVKASGLA---AGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFT 226 (452)
T ss_dssp HCSSCEEEEEESBC------CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEE
T ss_pred hCCCCeEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEE
Confidence 47899 999997765 46789999998766541 1 124799999999 6788888884
No 67
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=95.03 E-value=0.0064 Score=52.09 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=41.2
Q ss_pred CCCCceEeecccccCCccceeEEEEeCCCcCcCC----C-------CCCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDL----N-------VPIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l----~-------~p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.||+|+||.... .+..+.++.+++++... . ...++++||||. |.-|-|.++.|
T Consensus 140 ~~g~PvVvKp~~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~d 205 (431)
T 3mjf_A 140 QKGAPIVIKADGLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD--GEEASFIVMVD 205 (431)
T ss_dssp HHCSSEEEEESSSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC--SEEEEEEEEEE
T ss_pred HcCCeEEEEECCCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC--CcEEEEEEEEc
Confidence 46799999997554 57889999998776542 0 113699999999 57888888754
No 68
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=93.04 E-value=0.029 Score=48.17 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=39.5
Q ss_pred hcCCCCceEeecccccCCccceeEEEEeCCCcCcCCC--CCCceeEeeeecC------CC--eEEEEEEEC
Q 038140 17 DAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN--VPIPAVVQEYVNH------SS--TLFKFYVLG 77 (159)
Q Consensus 17 ~~~l~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~--~p~p~V~QefInH------~g--~l~KVyViG 77 (159)
+.|-.-+||+||...+ .+..+.++.+.+.+.+.. ...++|+|+||.+ +| ..+++||+-
T Consensus 143 ~~~~~~~wI~KP~~~s---rG~GI~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlv 210 (380)
T 3tig_A 143 ENEEGNVWIAKSSSGA---KGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLV 210 (380)
T ss_dssp HTTCCCCEEEEESCC-------CCBCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEE
T ss_pred hcCCCCeEEEeCCccC---CCCCEEEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEE
Confidence 3578899999995543 688888888877764321 1236899999975 44 588999884
No 69
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=91.96 E-value=0.023 Score=44.65 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=39.0
Q ss_pred CCCCceEeeccccc--CCccceeEEE-EeCCCcCcCC-----C-----C----CCceeEeeeecCCCeEEEEEEECCe
Q 038140 19 QLSLPCIVKPQVAC--GTADSHSMAI-VFGTEDFKDL-----N-----V----PIPAVVQEYVNHSSTLFKFYVLGEN 79 (159)
Q Consensus 19 ~l~fP~I~Kp~~A~--Gs~~sH~M~l-v~~~~~L~~l-----~-----~----p~p~V~QefInH~g~l~KVyViGd~ 79 (159)
.+.||+|+||...+ +..++-.+.+ +.+++++... . . ..++++|+||++ |.=+-|-+++|.
T Consensus 54 ~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~-g~E~~v~v~~d~ 130 (238)
T 1wr2_A 54 EIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKP-GREVIIGVTEDP 130 (238)
T ss_dssp HHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCCC-CEEEEEEEEEET
T ss_pred HhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCCC-CeEEEEEEEeCC
Confidence 47899999997651 1124556666 7888776542 0 0 136999999995 555556666654
No 70
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=88.08 E-value=0.087 Score=44.49 Aligned_cols=42 Identities=29% Similarity=0.191 Sum_probs=29.6
Q ss_pred CCceEeecccccCCccceeEEEEeCCCcCcCCC-----------C-CCceeEeeeec
Q 038140 21 SLPCIVKPQVACGTADSHSMAIVFGTEDFKDLN-----------V-PIPAVVQEYVN 65 (159)
Q Consensus 21 ~fP~I~Kp~~A~Gs~~sH~M~lv~~~~~L~~l~-----------~-p~p~V~QefIn 65 (159)
.||+|+||.-+. .++...++.+++++...- . ..++|+||||+
T Consensus 150 ~~PvVVK~~~~a---~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 150 DGTVIVKFPGAR---GGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp CSCEEEECSCCC---C---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred CCCEEEeeCCCC---CCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 699999996655 589999999987765420 1 02589999998
No 71
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=80.68 E-value=2.3 Score=38.52 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=43.5
Q ss_pred ceEeecccccCCccceeEEEEeC-CCcCcCCCC---CCceeEeeeecCCC-----eEEEEEEECCeEE-EEEecC
Q 038140 23 PCIVKPQVACGTADSHSMAIVFG-TEDFKDLNV---PIPAVVQEYVNHSS-----TLFKFYVLGENIF-HAVKKS 87 (159)
Q Consensus 23 P~I~Kp~~A~Gs~~sH~M~lv~~-~~~L~~l~~---p~p~V~QefInH~g-----~l~KVyViGd~v~-~~~R~S 87 (159)
.+|.||+.+. ++..|.|+-+ .+.+.+... ..++|.|+|++--. .++=+|+||++.. +..|.+
T Consensus 529 ~yV~KPi~gR---eG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~ 600 (619)
T 2io8_A 529 GYAVKPIAGR---CGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_dssp CEEEEETTCC---TTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEEccCCCC---CCCCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEecC
Confidence 3999998887 7888999865 222222111 25799999998654 3488999999755 567875
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=78.77 E-value=0.57 Score=39.89 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=39.2
Q ss_pred CCCCc-eEeecccc-cCCccceeEEEEeCCCcCcCC-----C----------C---CCceeEeeeecCCCeEEEEEEECC
Q 038140 19 QLSLP-CIVKPQVA-CGTADSHSMAIVFGTEDFKDL-----N----------V---PIPAVVQEYVNHSSTLFKFYVLGE 78 (159)
Q Consensus 19 ~l~fP-~I~Kp~~A-~Gs~~sH~M~lv~~~~~L~~l-----~----------~---p~p~V~QefInH~g~l~KVyViGd 78 (159)
.+.|| +|+||... .|..++..+.++.+++++.+. . . ..++++|+|++++ .=|=|-++.|
T Consensus 37 ~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~-~E~~v~v~~D 115 (388)
T 2nu8_B 37 KIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIA-KELYLGAVVD 115 (388)
T ss_dssp HHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEE-EEEEEEEEEE
T ss_pred HhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccccC-CcEEEEEEEe
Confidence 47899 99999873 233477889999887665431 1 0 1269999999964 3333444444
Q ss_pred e
Q 038140 79 N 79 (159)
Q Consensus 79 ~ 79 (159)
.
T Consensus 116 ~ 116 (388)
T 2nu8_B 116 R 116 (388)
T ss_dssp T
T ss_pred c
Confidence 3
No 73
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=78.77 E-value=0.53 Score=40.25 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=33.8
Q ss_pred CCCCceEeeccc-ccCCccceeEEEEeCCCcCcCC-----C------CCCceeEeeeecCC
Q 038140 19 QLSLPCIVKPQV-ACGTADSHSMAIVFGTEDFKDL-----N------VPIPAVVQEYVNHS 67 (159)
Q Consensus 19 ~l~fP~I~Kp~~-A~Gs~~sH~M~lv~~~~~L~~l-----~------~p~p~V~QefInH~ 67 (159)
.+.||+|+|+.. +.|..++..+.++.+++.+.+. . ...++++|||++++
T Consensus 37 ~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~~g 97 (397)
T 3ufx_B 37 EFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVDIA 97 (397)
T ss_dssp HHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCCEE
T ss_pred HcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeecCC
Confidence 356999999977 2344467789999887665441 1 01368999999863
No 74
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=66.52 E-value=2.5 Score=36.06 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=36.3
Q ss_pred CCCC-ceEeecccccCC-ccc-------eeEEEEeCCCcCcC----C-CC-------------CCceeEeeeecCCCeEE
Q 038140 19 QLSL-PCIVKPQVACGT-ADS-------HSMAIVFGTEDFKD----L-NV-------------PIPAVVQEYVNHSSTLF 71 (159)
Q Consensus 19 ~l~f-P~I~Kp~~A~Gs-~~s-------H~M~lv~~~~~L~~----l-~~-------------p~p~V~QefInH~g~l~ 71 (159)
.+.| |+|+||...+|. -.+ -.+.++.+++++.+ + .. ...+++|||++++ .=|
T Consensus 37 ~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~-~E~ 115 (395)
T 2fp4_B 37 RLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDIS-RET 115 (395)
T ss_dssp HHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCS-EEE
T ss_pred HcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCc-eeE
Confidence 4789 899999865543 222 44888888765533 1 00 0248999999854 333
Q ss_pred EEEEECCe
Q 038140 72 KFYVLGEN 79 (159)
Q Consensus 72 KVyViGd~ 79 (159)
=|-++.|.
T Consensus 116 ~v~i~~D~ 123 (395)
T 2fp4_B 116 YLAILMDR 123 (395)
T ss_dssp EEEEEEET
T ss_pred EEEEEEcc
Confidence 34444443
No 75
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=50.18 E-value=17 Score=33.13 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=31.2
Q ss_pred ceEeecccccCCccceeEEEEeCCCc-CcCCCC---CCceeEeeeec-----CCCeEEEEEEECCeE-EEEEecC
Q 038140 23 PCIVKPQVACGTADSHSMAIVFGTED-FKDLNV---PIPAVVQEYVN-----HSSTLFKFYVLGENI-FHAVKKS 87 (159)
Q Consensus 23 P~I~Kp~~A~Gs~~sH~M~lv~~~~~-L~~l~~---p~p~V~QefIn-----H~g~l~KVyViGd~v-~~~~R~S 87 (159)
.+|.||..+- ++..+.|+-+... ...... ..|+|.|+|+. -.-.++=+|++|++. =+..|-|
T Consensus 544 ~yV~KPi~gR---eG~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 544 GYAKKPIVGR---VGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp CEEEEECC------------------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred CeEeccCCCC---CCCCEEEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 3999998877 6777887643221 111111 25799999997 356789999999964 4557886
No 76
>2qzi_A Uncharacterized protein; APC86636, streptococcus thermophilus LMG 18311, structural G PSI-2, protein structure initiative; 2.20A {Streptococcus thermophilus}
Probab=41.91 E-value=7.7 Score=27.31 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=30.6
Q ss_pred eEEEEeCCCcCcCCCCCCceeEeeeecCCCeEEEEEEECCeEEEEEec
Q 038140 39 SMAIVFGTEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGENIFHAVKK 86 (159)
Q Consensus 39 ~M~lv~~~~~L~~l~~p~p~V~QefInH~g~l~KVyViGd~v~~~~R~ 86 (159)
.|-||--...-++ .|-+++=|-++.++|||-.|..-.++..-
T Consensus 3 ~MkLI~vTns~~~------LV~~qL~~Tda~~vkVYSlGnT~Vvyt~a 44 (103)
T 2qzi_A 3 AMKLINTTWTHQE------LVNNQLDNTDAFLVETYSAGNTDVVFTQA 44 (103)
T ss_dssp CCCEEECGGGCHH------HHHHHHHHSSCSEEEEEEETTEEEEEEEE
T ss_pred ccEEEeccCcHHH------HHHHHHhCCCccEEEEEecCCceEEEEec
Confidence 4666666544333 36777788889999999999987777654
No 77
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=40.68 E-value=7.4 Score=34.13 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=33.9
Q ss_pred ceEeecccccCCccceeEEEE--eCCCcCcC----C-CCCCceeEeeeecCC-------------CeEEEEEEE-CCeEE
Q 038140 23 PCIVKPQVACGTADSHSMAIV--FGTEDFKD----L-NVPIPAVVQEYVNHS-------------STLFKFYVL-GENIF 81 (159)
Q Consensus 23 P~I~Kp~~A~Gs~~sH~M~lv--~~~~~L~~----l-~~p~p~V~QefInH~-------------g~l~KVyVi-Gd~v~ 81 (159)
=+|+||..+.| +..|.+= .+++.+.. + ..|.-+|+||+|.=+ .+.+++|++ |+.+.
T Consensus 364 ~lViKp~~g~g---g~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g~~~~ 440 (474)
T 3n6x_A 364 ELVVKEVQGSG---GYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKTVS 440 (474)
T ss_dssp GEEEEECCCE--------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEESSSEE
T ss_pred heEEEecCCCC---CCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcCCceE
Confidence 58999976654 5566442 22233333 2 122229999999743 257888887 66554
Q ss_pred EE----EecCCC
Q 038140 82 HA----VKKSTP 89 (159)
Q Consensus 82 ~~----~R~Slp 89 (159)
++ .|.+.+
T Consensus 441 v~pGgltRva~~ 452 (474)
T 3n6x_A 441 LVPGALCRVALR 452 (474)
T ss_dssp ECSCCEEEEECS
T ss_pred EecceEEEEecC
Confidence 42 455543
No 78
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=34.10 E-value=18 Score=18.77 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHHhCCc
Q 038140 134 DLELIKDAAKWLAKTLDLT 152 (159)
Q Consensus 134 ~~~~~~~ia~~Lr~~lGL~ 152 (159)
..++-.++|+.||+..|..
T Consensus 6 sydfadelakllrqa~g~~ 24 (26)
T 1sn9_A 6 SYDFADELAKLLRQAXGXX 24 (26)
T ss_dssp TBCHHHHHHHHHHHHTC--
T ss_pred ccchHHHHHHHHHHhhCcc
Confidence 3457789999999999864
No 79
>2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} SCOP: c.97.1.5
Probab=30.81 E-value=30 Score=27.95 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCcEeee
Q 038140 140 DAAKWLAKTLDLTIFGF 156 (159)
Q Consensus 140 ~ia~~Lr~~lGL~LfGf 156 (159)
.+|-++.+++||+|.||
T Consensus 227 slAV~lA~~~giTLiGf 243 (268)
T 2pw9_A 227 SLGLALAKRSGATLVAY 243 (268)
T ss_dssp HHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 46778999999999998
No 80
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=28.26 E-value=88 Score=19.65 Aligned_cols=21 Identities=19% Similarity=0.607 Sum_probs=15.8
Q ss_pred CCCeEEEEE-EECCeEEEEEec
Q 038140 66 HSSTLFKFY-VLGENIFHAVKK 86 (159)
Q Consensus 66 H~g~l~KVy-ViGd~v~~~~R~ 86 (159)
|.---||.| ||||++.++.-+
T Consensus 7 hamdtyklfivigdrvvvt~tk 28 (65)
T 1mhx_A 7 HAMDTYKLFIVIGDRVVVVTTE 28 (65)
T ss_dssp CCCEEEEEEEEETTEEEEEEEE
T ss_pred cccceeeEEEEEcCEEEEEEee
Confidence 344568877 689999988766
No 81
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=26.27 E-value=26 Score=23.91 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=17.1
Q ss_pred eeecCC--CeEEEEEEECCeEEEE
Q 038140 62 EYVNHS--STLFKFYVLGENIFHA 83 (159)
Q Consensus 62 efInH~--g~l~KVyViGd~v~~~ 83 (159)
.|+||- |-+|+|-.+||.=.++
T Consensus 5 ~YLNHPtFGlLy~Vc~~~e~~~lf 28 (89)
T 2xko_C 5 NYLNHPTFGLLYQICSFGDSKELF 28 (89)
T ss_dssp CEEEETTTEEEEEEEECC-CCEEE
T ss_pred ccccCCccchhheeeeCCCccHHH
Confidence 589998 9999999999864443
No 82
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=21.45 E-value=48 Score=21.60 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=22.7
Q ss_pred CCCChhHHHhhcCCCCceEeecccccCC
Q 038140 7 KDPGLPQRLSDAQLSLPCIVKPQVACGT 34 (159)
Q Consensus 7 ~~~~~~~~l~~~~l~fP~I~Kp~~A~Gs 34 (159)
....+++.+.++|+..|.-|. .-.||+
T Consensus 18 ~g~tlL~a~~~~gi~i~~~C~-~G~Cg~ 44 (94)
T 1awd_A 18 EDTYILDAAEEAGLDLPYSCR-AGACSS 44 (94)
T ss_dssp TTSCHHHHHHHTTCCCCCSSS-SSSSST
T ss_pred CCCcHHHHHHHcCCCCCcCCC-CCcCCC
Confidence 456889999999999999997 777775
No 83
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=20.11 E-value=50 Score=21.35 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCCCChhHHHhhcCCCCceEeecccccCC
Q 038140 6 FKDPGLPQRLSDAQLSLPCIVKPQVACGT 34 (159)
Q Consensus 6 ~~~~~~~~~l~~~~l~fP~I~Kp~~A~Gs 34 (159)
-....+++.+.++|+..|.-|. .-.||+
T Consensus 18 ~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~ 45 (95)
T 1frr_A 18 PEGTTILDAAEEAGYDLPFSCR-AGACSS 45 (95)
T ss_dssp CTTCCHHHHHHHTTCCCCCSSS-SSSSST
T ss_pred CCCCcHHHHHHHcCCCCCCCCC-CcCCCC
Confidence 3456889999999999999997 566654
Done!