RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 038140
         (159 letters)



>gnl|CDD|215508 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase.
          Length = 328

 Score = 87.3 bits (217), Expect = 3e-21
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 2   QVIDFKDP-GLPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVV 60
           Q++ + D   +P  ++ A L  P + KP VA G+A SH M++ +  E    L  P+  V+
Sbjct: 132 QLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPL--VL 189

Query: 61  QEYVNHSSTLFKFYVLGENIFHAVKKSTPNSGILMKSYERNGLRPIL-FDSLKSLPIDTE 119
           QE+VNH   LFK YV+G+ +    + S P+    +   E +    +L F  + +     +
Sbjct: 190 QEFVNHGGVLFKVYVVGDYVKCVRRFSLPD----VSEEELSSAEGVLPFPRVSNAAASAD 245

Query: 120 NQNSGDSISCTVDL-DLELIKDAAKWLAKTLDLTIFGFDVV 159
           + ++G       +L     ++D A+ L + L L +F FD++
Sbjct: 246 DADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMI 286


>gnl|CDD|114493 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trisphosphate
           5/6-kinase.  This family consists of several inositol 1,
           3, 4-trisphosphate 5/6-kinase proteins. Inositol
           1,3,4-trisphosphate is at a branch point in inositol
           phosphate metabolism. It is dephosphorylated by specific
           phosphatases to either inositol 3,4-bisphosphate or
           inositol 1,3-bisphosphate. Alternatively, it is
           phosphorylated to inositol 1,3,4,6-tetrakisphosphate or
           inositol 1,3,4,5-tetrakisphosphate by inositol
           trisphosphate 5/6-kinase.
          Length = 307

 Score = 84.4 bits (209), Expect = 3e-20
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 2   QVIDFKDPG-LPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVV 60
           QV+  KD   L +  + A L+ P I KP VA GTA SH M++V+  E    L  P+  V+
Sbjct: 118 QVVVMKDASSLSRAGAKAGLTFPLIAKPLVADGTAKSHEMSLVYDQEGLNKLQPPL--VL 175

Query: 61  QEYVNHSSTLFKFYVLGENIFHAVKKSTPNSGILMKSYERNGLRPILFDSLKSLPIDTEN 120
           QE+VNH   LFK YV+GE++    ++S P+    + +   +        S  S    + +
Sbjct: 176 QEFVNHGGVLFKVYVVGEHVTVVKRRSLPD----VSAGTLDRSSGSFRFSQVSNLTASAD 231

Query: 121 QNSGDSISCTVDL-DLELIKDAAKWLAKTLDLTIFGFDVV 159
               D I    ++     ++D A+ L + L L +F FD++
Sbjct: 232 DAELDKILEIAEMPPDPFLEDLARALRRALGLRLFNFDII 271


>gnl|CDD|217166 pfam02655, ATP-grasp_3, ATP-grasp domain.  No functional
          information or experimental verification of function is
          known in this family. This family appears to be an
          ATP-grasp domain (Pers. obs. A Bateman).
          Length = 159

 Score = 32.3 bits (74), Expect = 0.044
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 12 PQRLSDAQLSL---PCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQEYV 64
          P  LS  + +      IVKP+  CG        + F     +D       ++QE++
Sbjct: 18 PTTLSAEEPTEEEKKYIVKPRDGCG-----GEGVRFVENGREDEEFIENVIIQEFI 68


>gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein;
           Provisional.
          Length = 326

 Score = 28.3 bits (64), Expect = 1.7
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 13  QRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPI----PAVVQEYVNH 66
             L+  +L  P  VKP+   G+A       VF   D ++L   +      ++QE++  
Sbjct: 140 AALAKGELQFPLFVKPR--DGSASIG----VFKVNDKEELEFLLEYVPNLIIQEFIEG 191


>gnl|CDD|218094 pfam04454, Linocin_M18, Encapsulating protein for peroxidase.  The
           Linocin_M18 is found in eubacteria and archaea. These
           proteins, referred to as encapsulins, form
           nanocompartments within the bacterium which contain
           ferritin-like proteins or peroxidases, enzymes involved
           in oxidative-stress response. These enzymes are targeted
           to the interior of encapsulins via unique C-terminal
           extensions.
          Length = 254

 Score = 26.8 bits (60), Expect = 5.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 125 DSISCTVDLDLELIKDAAKWLAKTLDLTIF 154
           D      DLDL    +AA+ LA   D  IF
Sbjct: 91  DVERGAKDLDLSPAAEAARKLALAEDRLIF 120


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,013,691
Number of extensions: 698094
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 8
Length of query: 159
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 70
Effective length of database: 6,990,096
Effective search space: 489306720
Effective search space used: 489306720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)