RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 038140
(159 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 107 bits (267), Expect = 9e-29
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 1 MQVIDFKDPGLPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVV 60
M++ + L L+ P I K +VA GT +SH MAIVF E + P VV
Sbjct: 142 MELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPC--VV 198
Query: 61 QEYVNHSSTLFKFYVLGENIFHAVKKSTPNSGILMKSYERNGLRPILFDSLK-SLPIDTE 119
Q ++NH++ L+K +V+GE+ + S N S + I F+S S P +
Sbjct: 199 QNFINHNAVLYKVFVVGESYTVVQRPSLKNF-----SAGTSDRESIFFNSHNVSKPESSS 253
Query: 120 NQNSGDSISCTVDL-DLELIKDAAKWLAKTLDLTIFGFDVV 159
D I + E+I++ ++ L + L +++FG D++
Sbjct: 254 VLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDII 294
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 102 bits (255), Expect = 3e-27
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 13/169 (7%)
Query: 2 QVIDFKDPGLPQRLSDAQLSLPCIVKPQVACGTADSHSMAIVFGTEDFKDLNVPIPAVVQ 61
+ Q L QL LP IVKP+ A GT ++H M IV E D++ P + Q
Sbjct: 116 SFSVKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPC--LCQ 173
Query: 62 EYVNHSSTLFKFYVLGENIFHAVKKSTPNSGI-LMKSYERNGLRPILFDSLKSLPIDTEN 120
Y+NH++ + K + +G + + S PN +KS + N S ID ++
Sbjct: 174 HYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQD 233
Query: 121 QNSGDSISCTVDLDL----------ELIKDAAKWLAKTLDLTIFGFDVV 159
+ + ++D A + L + + G D +
Sbjct: 234 IIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFI 282
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.011
Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 63/197 (31%)
Query: 2 QVIDF----KDPG-LPQR--LSDAQLSLPCIVKPQ-----VAC---GTADSHSMAIVFG- 45
Q ++ ++P P + L +S P I Q V G + + G
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 46 TEDFKDLNVPIPAVVQEYVNHSSTLFKFYVLGENI----FH---AVKKSTPNSGI---LM 95
T + L + AV + + + F+V F ++ PN+ + ++
Sbjct: 271 TGHSQGL---VTAVA---IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 96 KSYERNGL---RPILFDSLKSLP-------IDTENQ-------------NSGDSISCT-- 130
+ N P+L S+ +L ++ N N ++ +
Sbjct: 325 EDSLENNEGVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 131 ----VDLDLELIKDAAK 143
L+L L K A
Sbjct: 383 PQSLYGLNLTLRKAKAP 399
Score = 33.5 bits (76), Expect = 0.024
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 35/103 (33%)
Query: 36 DSHSMAI-VFGTEDFKDL-----NVP---IPAVVQEYVN-HSSTLFKF-YVL--GENIFH 82
++ + I V+ T D DL ++ + +++ V ++T FK ++L G
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG----- 505
Query: 83 AVKKSTP--NSGI--LMKSYERN----GLRPILFDSLKSLPID 117
P SG+ L RN G+R I+ +L P D
Sbjct: 506 ------PGGASGLGVLTH---RNKDGTGVRVIVAGTLDINPDD 539
Score = 27.3 bits (60), Expect = 3.1
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 107 LFDS-LKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLA 146
L + K LP TE + D + +L K+L
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAEL-------VGKFLG 66
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 29.1 bits (65), Expect = 0.70
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 124 GDSISCTVDLDLELIKDAAKWLAKTLDLTIFGFDVV 159
GDSI T +D K A +A+ + + G D++
Sbjct: 664 GDSIDVTNTMDPT-YKQLAAEMAEAMGAWVCGVDLI 698
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 29.1 bits (65), Expect = 0.72
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 124 GDSISCTVDLDLELIKDAAKWLAKTLDLTIFGFDVV 159
GDSI T ++ K A + K + + G D++
Sbjct: 670 GDSIDMTDEMHESY-KQLAVGITKAMGAAVCGVDLI 704
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 28.2 bits (63), Expect = 1.2
Identities = 21/135 (15%), Positives = 33/135 (24%), Gaps = 36/135 (26%)
Query: 44 FGT-EDFKDLNVPIPAVVQEY------------VNHSSTLFKFYVLGENIFHAVKKSTPN 90
+G + K L + +NH +K IF
Sbjct: 65 YGNAAELKSL-------IGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSD--- 114
Query: 91 SGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDL------ELIKDAAKW 144
G I D T N ++G + D+D +K+ W
Sbjct: 115 ------GRLDWGPHMICRDD-TKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLW 167
Query: 145 LAKTLDLTIFGFDVV 159
L L + D
Sbjct: 168 LKSDLGFDAWRLDFA 182
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET:
ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A*
3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A*
Length = 330
Score = 28.0 bits (62), Expect = 1.4
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 59 VVQEYVNHSSTLFKFYVLGENIFHAVK-KSTPNSGILMKSYERNGLR 104
+ +E++ T K Y +G + HA KS G + + E +R
Sbjct: 199 IYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVR 245
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 28.0 bits (63), Expect = 1.6
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 29 QVACGTADSHSMAI 42
+ACG+ D+ ++ +
Sbjct: 215 DIACGSGDAQTLCL 228
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase;
HET: ATP; 3.07A {}
Length = 346
Score = 27.9 bits (63), Expect = 1.6
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 10/33 (30%)
Query: 6 FKDPGLPQ----------RLSDAQLSLPCIVKP 28
+ G+ ++ QL+ P VKP
Sbjct: 140 ARSAGIATPNFWTVTADEKIPTDQLTYPVFVKP 172
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial;
mitochondrion, DNA binding protein, transcription
factor, transcription termination; 1.60A {Homo sapiens}
PDB: 3opg_A 3my3_A
Length = 270
Score = 27.5 bits (61), Expect = 1.7
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 62 EYVNHSSTLFKFYVLGENIFHAVKKSTPNSGILMKSYERNGLRPILFDSLKSL 114
+YV+HS TL K +LG ++ K + +L +E++ ++ +L LK +
Sbjct: 1 DYVDHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKD-IKQML-LFLKDV 51
>1cl8_A Protein (endonuclease); endonuclease/DNA, DNA base analog,
protein/DNA complex; HET: DNA PRN; 1.80A {Escherichia
coli} SCOP: c.52.1.1 PDB: 1ckq_A* 1eri_A* 1qc9_A 2oxv_A*
1qps_A 1qrh_A 1qri_A
Length = 276
Score = 27.1 bits (59), Expect = 2.8
Identities = 17/74 (22%), Positives = 28/74 (37%)
Query: 76 LGENIFHAVKKSTPNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDL 135
LG +F + P+ GI+ + R +L K D N +G + D DL
Sbjct: 76 LGGTLFVSNSSIKPDGGIVEVKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDL 135
Query: 136 ELIKDAAKWLAKTL 149
+A + K +
Sbjct: 136 MAAGNAIERSHKNI 149
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 26.8 bits (59), Expect = 3.8
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 78 ENIFHAVKKSTPNSGILMKSYERNGLRPILFDSL 111
+F K N ++ Y+ LRP+L L
Sbjct: 627 PKLFEEALKDPLNDSVVPDGYQE-YLRPVLQQQL 659
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 26.2 bits (57), Expect = 5.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 113 SLPIDTENQNSGDSISCTV 131
LPI ++ +G C V
Sbjct: 409 ELPIMHQDWLNGKEFKCRV 427
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel,
protein-DNA complex, double helix, DNA encirclement,
transcription/DNA complex; 2.86A {Homo sapiens} SCOP:
b.1.18.1 b.2.5.3
Length = 281
Score = 26.2 bits (57), Expect = 5.8
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 35 ADSHSMAIVFGTEDFKDLNVPIPAVVQEYV 64
H ++ + D ++ +P V YV
Sbjct: 234 ELFHQNHLIVKVPPYHDQHITLPVSVGIYV 263
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell
WALL, antibiotic resistance, membrane, peptidog
synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium}
SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Length = 343
Score = 26.0 bits (58), Expect = 6.8
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 10/33 (30%)
Query: 6 FKDPGLPQ----------RLSDAQLSLPCIVKP 28
K+ G+ R A + P VKP
Sbjct: 140 AKNAGIATPAFWVINKDDRPVAATFTYPVFVKP 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,371,129
Number of extensions: 124557
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 24
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)