RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 038140
         (159 letters)



>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5
          (TONEBP) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 29.0 bits (65), Expect = 0.11
 Identities = 6/34 (17%), Positives = 14/34 (41%)

Query: 35 ADSHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSS 68
             H   ++     + D ++ +P  V  YV  ++
Sbjct: 54 ELFHQNHLIVKVPPYHDQHITLPVSVGIYVVTNA 87


>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB),
          dimerization domain {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 107

 Score = 25.4 bits (56), Expect = 2.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 37 SHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSS 68
             +AIVF T  + D ++  P  V   +   S
Sbjct: 55 HRQVAIVFRTPPYADPSLQAPVRVSMQLRRPS 86


>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription
          factor {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 24.7 bits (54), Expect = 3.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 37 SHSMAIVFGTEDFKDLNVPIPAVVQEYVNHSS 68
              AI F T  +KD+N+  PA V   +   S
Sbjct: 58 HRQFAICFKTPKYKDVNITKPASVFVQLRRKS 89


>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3
           and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 198

 Score = 24.8 bits (54), Expect = 4.2
 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 78  ENIFHAVKKSTPNSGILMKSYERNGLRPIL 107
             +F    K   N  ++   Y+   LRP+L
Sbjct: 166 PKLFEEALKDPLNDSVVPDGYQEY-LRPVL 194


>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 23.9 bits (52), Expect = 5.9
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 38 HSMAIVFGTEDFKDLNVPIPAVVQEYVNHSS 68
             AIVF T  +  + +  P  V   +    
Sbjct: 57 KQYAIVFRTPPYHKMKIERPVTVFLQLKRKR 87


>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 201

 Score = 24.3 bits (53), Expect = 6.9
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 40  MAIVFGTEDFKDLNVPIPAVVQEYV----NHSST-LFKFYVLGENIFH 82
           +  V   E+ +    P   ++  +V    N   T    FY L   I +
Sbjct: 67  LTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMN 114


>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma
           constant domain 2, CH2-gamma {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 116

 Score = 23.5 bits (50), Expect = 9.7
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 113 SLPIDTENQNSGDSISCTVD 132
           +LPI  ++  +G    C V+
Sbjct: 80  ALPIMHQDWLNGKEFKCRVN 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 574,701
Number of extensions: 24010
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 8
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)