BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038143
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 30 EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEA 89
+ + +SG TALH+AAA G T ++ L++ A + I++ G T H AA G E
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQ-----ARYDVNIKDYDGWTPLHAAAHWGKEE 246
Query: 90 MCHCM 94
C +
Sbjct: 247 ACRIL 251
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASN-VLKIQNDRGDTAFHLAAALG 86
+T GDTALH+A + L +G +A + L +QND G TA HLAA LG
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFL---LGFSAGHEYLDLQNDLGQTALHLAAILG 56
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA 82
G TALH+AA G+ + V +L + VL + G TA HLA
Sbjct: 45 GQTALHLAAILGEASTVEKLYAA----GAGVL-VAERGGHTALHLA 85
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASN-VLKIQNDRGDTAFHLAAALG 86
+T GDTALH+A + L +G +A + L +QND G TA HLAA LG
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFL---LGFSAGHEYLDLQNDLGQTALHLAAILG 56
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA 82
G TALH+AA G+ + V +L + VL + G TA HLA
Sbjct: 45 GQTALHLAAILGEASTVEKLYAA----GAGVL-VAERGGHTALHLA 85
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
Length = 154
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
G T LH+AAA G E+VE++ N ++V + + G T HLAA+LG+ + +
Sbjct: 35 GRTPLHMAAAVGHL----EIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEIVEVL 87
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
+G T L++AA G E+VE++ ++ ++V Q+ G TAF ++ +GNE + +
Sbjct: 100 TGITPLYLAAYWGHL----EIVEVLLKHGADV-NAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
+G T LH+AAA G E+VE++ ++ ++V ND G T HLAA G+
Sbjct: 79 TGITPLHLAAATGHL----EIVEVLLKHGADVNAYDND-GHTPLHLAAKYGH 125
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNV-LKIQNDRGDTAFHLAAALGNEAMC 91
L ++G TAL+ A G +IV L N+ L QN GDTA H AA G +
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEXLF-----TQPNIELNQQNKLGDTALHAAAWKGYADIV 156
Query: 92 HCMASK 97
+ +K
Sbjct: 157 QLLLAK 162
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 9 FAMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELV 57
+A G +IV+ P + + GDTALH AA G +IV L+
Sbjct: 112 WACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA 82
R G TALH+AA + +V LVE+ + ++++++RG TA LA
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGAD-----IEVEDERGLTALELA 150
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA 82
R G TALH+AA + +V LVE+ + ++++++RG TA LA
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGAD-----IEVEDERGLTALELA 151
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
GDT LH+AA G E+VE++ ++ ++V Q+ G TAF ++ GNE + +
Sbjct: 113 GDTPLHLAAIMGHL----EIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
G T LH+AA G E+VE++ ++ ++V + GDT HLAA +G+
Sbjct: 80 GSTPLHLAALIGHL----EIVEVLLKHGADVNAVDT-WGDTPLHLAAIMGH 125
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
GDT LH+AA G E+VE++ ++ ++V Q+ G TAF ++ GNE + +
Sbjct: 113 GDTPLHLAAIMGHL----EIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
G T LH+AA G E+VE++ ++ ++V + GDT HLAA +G+ + +
Sbjct: 80 GSTPLHLAALIGHL----EIVEVLLKHGADVNAVDT-WGDTPLHLAAIMGHLEIVEVL 132
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
GDT LH+AA G E+VE++ +N ++V + G T HLAA G+ + +
Sbjct: 47 GDTPLHLAARVGHL----EIVEVLLKNGADVNALDF-SGSTPLHLAAKRGHLEIVEVL 99
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
G T LH+AA G E+VE++ + ++V Q+ G TAF ++ GNE + +
Sbjct: 113 GSTPLHLAADTGHL----EIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 33 LTRSGDTALHIAAAAGQTNIVSELVEIMGE-NASNVLKIQNDRGDTAFHLAAALGNEAMC 91
L SG T LH+AA G IV L++ + NA + + G T HLAA G+ +
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI------GSTPLHLAADTGHLEIV 129
Query: 92 HCM 94
+
Sbjct: 130 EVL 132
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
G T LH+AA G E+VE++ +N ++V ++D G T HLAA G+ + +
Sbjct: 80 GSTPLHLAAHFGHL----EIVEVLLKNGADV-NAKDDNGITPLHLAANRGHLEIVEVL 132
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 41 LHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALG 86
+H+AA GQT+ V L+E G + + IQN G TA HLA G
Sbjct: 24 IHVAARKGQTDEVRRLIE-TGVSPT----IQNRFGCTALHLACKFG 64
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 16/70 (22%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQND----------------RGDTAFH 80
G +H+A A +T++V LVE E + N+ +G TA H
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 81 LAAALGNEAM 90
LG E +
Sbjct: 144 WCVGLGPEYL 153
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGE-NASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
+G T LHIAA Q + L++ G NA +V +G T HLAA G+ M +
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV------QGVTPLHLAAQEGHAEMVALL 264
Query: 95 ASK 97
SK
Sbjct: 265 LSK 267
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 10 AMTGQWDNIVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLK 69
A G + + ENN A T +G T LHIAA G V L+E A
Sbjct: 88 ARIGHTNMVKLLLENNANPNLA--TTAGHTPLHIAAREGHVETVLALLEKEASQAC---- 141
Query: 70 IQNDRGDTAFHLAAALGNEAMCHCMASKD 98
+G T H+AA G + + +D
Sbjct: 142 -MTKKGFTPLHVAAKYGKVRVAELLLERD 169
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 15/73 (20%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN------- 87
+ T LH AA G TN+V L+ EN +N + G T H+AA G+
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLL----ENNANP-NLATTAGHTPLHIAAREGHVETVLAL 132
Query: 88 ---EAMCHCMASK 97
EA CM K
Sbjct: 133 LEKEASQACMTKK 145
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 38 DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
+T LH+AA AG T + L++ A K ++D+ T H AA +G+ M
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQ---NKAKVNAKAKDDQ--TPLHCAARIGHTNM 95
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
+ GDT LH+AA G E+VE++ +N ++V + G T HLAA G+ + +
Sbjct: 78 KMGDTPLHLAALYGHL----EIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVL 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
R G+T LH+AA E+VE++ ++ ++V ND G T HLAA G+ + +
Sbjct: 45 RKGNTPLHLAADYDHL----EIVEVLLKHGADVNAHDND-GSTPLHLAALFGHLEIVEVL 99
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
G T LH+AA G E+VE++ ++ ++V Q+ G TAF ++ GNE + +
Sbjct: 79 DGSTPLHLAALFGHL----EIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
G TALH A AG T IV LV+ NV +D G T H AA+ N +C
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQF----GVNVNAADSD-GWTPLHCAASCNNVQVC 119
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
G TALH A AG T IV LV+ NV +D G T H AA+ N +C
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQF----GVNVNAADSD-GWTPLHCAASCNNVQVC 119
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
Length = 241
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLA 82
GDT LHIA G V LV + + L I N+ T HLA
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLA 53
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain
Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain
Mutant
Length = 253
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA 84
R+G TALH+AAA +++ L+E AS IQ++ G T H A +
Sbjct: 55 RTGATALHLAAAYSRSDAAKRLLE-----ASADANIQDNMGRTPLHAAVS 99
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
R+G T LH+AA +GQ E+VE++ ++ ++V Q+ G TAF ++ G E + +
Sbjct: 103 RAGWTPLHLAALSGQL----EIVEVLLKHGADV-NAQDALGLTAFDISINQGQEDLAEIL 157
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
+G T LH+AAA GQ E+VE++ +N ++V + G T HLAA G+ + +
Sbjct: 38 NGLTPLHLAAANGQL----EIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVL 91
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGN 87
R+G +H AA AGQ + + L+E + + I+++ G+ HLAA G+
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGH 115
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA 84
R+G+TALH+AA +++ L+E AS IQ++ G T H A +
Sbjct: 56 RTGETALHLAARYSRSDAAKRLLE-----ASADANIQDNMGRTPLHAAVS 100
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA 84
R+G+TALH+AA +++ L+E AS IQ++ G T H A +
Sbjct: 55 RTGETALHLAARYSRSDAAKRLLE-----ASADANIQDNMGRTPLHAAVS 99
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA 84
R+G+TALH+AA +++ L+E AS IQ++ G T H A +
Sbjct: 20 RTGETALHLAARYSRSDAAKRLLE-----ASADAXIQDNMGRTPLHAAVS 64
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution
Length = 223
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA 84
R+G+TALH+AA +++ L+E AS IQ++ G T H A +
Sbjct: 23 RTGETALHLAARYSRSDAAKRLLE-----ASADANIQDNMGRTPLHAAVS 67
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
++G T LH+AA G +V L+E A + Q+ G TAF ++ GNE + +
Sbjct: 37 KNGSTPLHLAARNGHLEVVKLLLE-----AGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
++G T LH+AA G +V L+E A + Q+ G TAF ++ GNE + +
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLE-----AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 27 MSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE-NASNVLKIQNDRGDTAFHLA 82
+SR+A+ T+ T LH+AA+ G NIV L++ + NA ++LK+ TA H A
Sbjct: 58 VSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM------TALHWA 107
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASK 97
TALH A +AG T IV L++ +G ++ ++D G + H+AA+ G + + + K
Sbjct: 42 TALHWACSAGHTEIVEFLLQ-LGVPVND----KDDAGWSPLHIAASAGRDEIVKALLGK 95
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA 84
+G + LHIAA+AG+ IV L +G+ A + N G T H AA+
Sbjct: 72 AGWSPLHIAASAGRDEIVKAL---LGKGAQ--VNAVNQNGCTPLHYAAS 115
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASK 97
TALH A +AG T IV L++ +G ++ ++D G + H+AA+ G + + + K
Sbjct: 43 TALHWACSAGHTEIVEFLLQ-LGVPVND----KDDAGWSPLHIAASAGRDEIVKALLGK 96
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA 84
+G + LHIAA+AG+ IV L +G+ A + N G T H AA+
Sbjct: 73 AGWSPLHIAASAGRDEIVKAL---LGKGAQ--VNAVNQNGCTPLHYAAS 116
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 38 DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAM 90
+TALH A AG T ++S L+E G N + QN +G++A LA N M
Sbjct: 178 NTALHWAVLAGNTTVISLLLE-AGAN----VDAQNIKGESALDLAKQRKNVWM 225
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
G+T LH+ A G E+VE++ ++ ++V Q+ G TAF ++ GNE + +
Sbjct: 80 GETPLHLVAMYGHL----EIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASK 97
TALH A +AG T IV L++ +G ++ ++D G + H+AA+ G + + + K
Sbjct: 42 TALHWACSAGHTEIVEFLLQ-LGVPVND----KDDAGWSPLHIAASAGRDEIVKALLVK 95
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA 84
+G + LHIAA+AG+ IV L+ + G + + V N G T H AA+
Sbjct: 72 AGWSPLHIAASAGRDEIVKALL-VKGAHVNAV----NQNGCTPLHYAAS 115
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGD-TAFHLAAALGNEAMC 91
+ ++G T LH AA+ + I L+E G N D D TA H AAA GN M
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLE-GGANPD-----AKDHYDATAMHRAAAKGNLKMV 155
Query: 92 HCM 94
H +
Sbjct: 156 HIL 158
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMASK 97
TALH A +AG T IV L++ +G ++ ++D G + H+AA+ G + + + K
Sbjct: 42 TALHWACSAGHTEIVEFLLQ-LGVPVND----KDDAGWSPLHIAASAGXDEIVKALLVK 95
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAA 84
+G + LHIAA+AG IV L+ + G + + V N G T H AA+
Sbjct: 72 AGWSPLHIAASAGXDEIVKALL-VKGAHVNAV----NQNGCTPLHYAAS 115
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGD-TAFHLAAALGNEAMC 91
+ ++G T LH AA+ + I L+E G N D D TA H AAA GN M
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLE-GGANPD-----AKDHYDATAMHRAAAKGNLKMV 155
Query: 92 HCM 94
H +
Sbjct: 156 HIL 158
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALG 86
G TALH AA IV LV GE SN K Q++ G T LAA G
Sbjct: 279 GRTALHYAAQVSNXPIVKYLV---GEKGSNKDK-QDEDGKTPIXLAAQEG 324
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMC 91
+G T LH+AA G E+VE++ + ++V Q+ G TAF ++ GNE +
Sbjct: 112 TGSTPLHLAADEGHL----EIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLA 162
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 32 KLTRSGDTALHIAAAAGQTNIVSELV-EIMGENASNVLKIQNDRGDTAFHLAA 83
+LT GD+ LH+A + + E++ ++ G+ A L QN+ T HLA
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAV 53
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 37 GDTALHIAAAAGQTNIVSELVE-IMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMA 95
G+T LH+A G V L + + ++LK N G T HLA+ G + +
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Query: 96 S 96
S
Sbjct: 138 S 138
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 18 IVQAYENNPMSREA-KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGD 76
+V++ + P+ + K+T G T LH+A E+ + + EN ++V +I++
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF----EVSQFLIENGASV-RIKDKFNQ 141
Query: 77 TAFHLAAALGN----EAMC 91
H AA++G+ E +C
Sbjct: 142 IPLHRAASVGSLKLIELLC 160
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 18 IVQAYENNPMSREA-KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGD 76
+V++ + P+ + K+T G T LH+A E+ + + EN ++V +I++
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF----EVSQFLIENGASV-RIKDKFNQ 141
Query: 77 TAFHLAAALGN----EAMC 91
H AA++G+ E +C
Sbjct: 142 IPLHRAASVGSLKLIELLC 160
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 18 IVQAYENNPMSREA-KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGD 76
+V++ + P+ + K+T G T LH+A E+ + + EN ++V +I++
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF----EVSQFLIENGASV-RIKDKFNQ 141
Query: 77 TAFHLAAALGN----EAMC 91
H AA++G+ E +C
Sbjct: 142 IPLHRAASVGSLKLIELLC 160
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
+SG T LH+AA G E+VE++ + ++V + +G T HLAA G+ + +
Sbjct: 78 KSGWTPLHLAAYRGHL----EIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVL 132
>pdb|1H96|A Chain A, Recombinant Mouse L-Chain Ferritin
pdb|1LB3|A Chain A, Structure Of Recombinant Mouse L Chain Ferritin At 1.2 A
Resolution
Length = 182
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +L+ QNDRG A
Sbjct: 43 ALEGVGHFFRELAEEKREGAERLLEFQNDRGGRAL 77
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 33 LTRSGDTALHIAAAAGQTNIVSELV-EIMGENASNVLKIQNDRGDTAFHLAA 83
LT GD+ LH+A + + E++ ++ G+ A L QN+ T HLA
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAV 50
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 37 GDTALHIAAAAGQTNIVSELVE-IMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCMA 95
G+T LH+A G V L + + ++LK N G T HLA+ G + +
Sbjct: 75 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 134
Query: 96 S 96
S
Sbjct: 135 S 135
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 65 SNVLKIQNDRGDTAFHLAAALGN 87
+N+L Q+ GDT ++AA LGN
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGN 295
>pdb|2ZUR|X Chain X, Crystal Structure Of Rh(Nbd)APO-Fr
Length = 174
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 43 ALEGVXHFFRELAEEKREGAERLLKMQNQRGGRAL 77
>pdb|3AF9|X Chain X, Crystal Structure Of Pd(Allyl)APO-C48afr
Length = 174
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 43 ALEGVAHFFRELAEEKREGAERLLKMQNQRGGRAL 77
>pdb|3NP2|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cC48A-Rhlfr
Length = 174
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 43 ALCGVAHFFRELAEEKREGAERLLKMQNQRGGRAL 77
>pdb|2ZA8|A Chain A, Recombinant Horse L-Chain Apoferritin N-Terminal
Deletion Mutant (Residues 1-8)
Length = 167
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 36 ALEGVCHFFRELAEEKREGAERLLKMQNQRGGRAL 70
>pdb|2ZA6|A Chain A, Recombinant Horse L-Chain Apoferritin
pdb|2V2I|A Chain A, Wild Type Recombinant Horse Spleen Apoferritin
Cocrystallized With Haemin In Acidic Conditions
pdb|2V2J|A Chain A, Wild Type Recombinant Horse Spleen Apoferritin
Cocrystallized With Haemin In Basic Conditions
Length = 175
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 44 ALEGVCHFFRELAEEKREGAERLLKMQNQRGGRAL 78
>pdb|2ZA7|A Chain A, Recombinant Horse L-Chain Apoferritin N-Terminal
Deletion Mutant (Residues 1-4)
Length = 171
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 40 ALEGVCHFFRELAEEKREGAERLLKMQNQRGGRAL 74
>pdb|3NOZ|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cR52H-Rhlfr
Length = 174
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 43 ALCGVCHFFHELAEEKREGAERLLKMQNQRGGRAL 77
>pdb|2G4H|A Chain A, Anomalous Substructure Of Apoferritin
pdb|1AEW|A Chain A, L-Chain Horse Apoferritin
pdb|1DAT|A Chain A, Cubic Crystal Structure Recombinant Horse L Apoferritin
pdb|2Z5P|A Chain A, Apo-fr With Low Content Of Pd Ions
pdb|3H7G|A Chain A, Apo-Fr With Au Ions
Length = 174
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 43 ALEGVCHFFRELAEEKREGAERLLKMQNQRGGRAL 77
>pdb|1IES|A Chain A, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1IES|B Chain B, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1IES|C Chain C, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1IES|D Chain D, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1IES|E Chain E, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1IES|F Chain F, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1GWG|A Chain A, Tri-Iodide Derivative Of Apoferritin
pdb|1XZ1|A Chain A, Complex Of Halothane With Apoferritin
pdb|1XZ3|A Chain A, Complex Of Apoferritin With Isoflurane
pdb|1HRS|A Chain A, A Crystallographic Study Of Haem Binding To Ferritin
pdb|1IER|A Chain A, Cubic Crystal Structure Of Native Horse Spleen Ferritin
pdb|2Z5Q|A Chain A, Apo-Fr With Intermediate Content Of Pd Ion
pdb|2Z5R|A Chain A, Apo-Fr With High Content Of Pd Ions
pdb|2W0O|A Chain A, Horse Spleen Apoferritin
pdb|2ZG7|X Chain X, Crystal Structure Of Pd(Allyl)APO-Fr
pdb|3F32|A Chain A, Horse Spleen Apoferritin
pdb|3F33|A Chain A, Apoferritin: Complex With Propofol
pdb|3F34|A Chain A, Apoferritin: Complex With 2,6-Diethylphenol
pdb|3F35|A Chain A, Apoferritin: Complex With 2,6-Diethylphenol
pdb|3F36|A Chain A, Apoferritin: Complex With 2-Isopropylphenol
pdb|3F37|A Chain A, Apoferritin: Complex With 2,6-Dimethylphenol
pdb|3F38|A Chain A, Apoferritin: Complex With 2,6-Dimethylphenol
pdb|3F39|A Chain A, Apoferritin: Complex With Phenol
pdb|3AF7|X Chain X, Crystal Structure Of 25pd(Allyl)APO-Fr
pdb|3O7S|A Chain A, Crystal Structure Of Ru(P-Cymene)APO-Fr
pdb|3RAV|A Chain A, Horse Spleen Apo-Ferritin With Bound Pentobarbital
pdb|3RD0|A Chain A, Horse Spleen Apo-Ferritin With Bound Thiopental
pdb|4DE6|A Chain A, Horse Spleen Apo-Ferritin Complex With Arachidonic Acid
pdb|3U90|A Chain A, Apoferritin: Complex With Sds
Length = 174
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 43 ALEGVCHFFRELAEEKREGAERLLKMQNQRGGRAL 77
>pdb|2ZG9|X Chain X, Crystal Structure Of Pd(Allyl)APO-H114afr
Length = 174
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 43 ALEGVCHFFRELAEEKREGAERLLKMQNQRGGRAL 77
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHC 93
++ G+T LH+AA G +E+V+++ ++V D G+T HLA G+ +
Sbjct: 39 SKDGNTPLHLAAKNGH----AEIVKLLLAKGADVNARSKD-GNTPEHLAKKNGHHEIVKL 93
Query: 94 MASK 97
+ +K
Sbjct: 94 LDAK 97
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHC 93
++ G+T LH AA G V +L+ + + ++ G+T HLAA G+ +
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 94 MASK 97
+ +K
Sbjct: 61 LLAK 64
>pdb|2GYD|A Chain A, Complex Of Equine Apoferritin With The H-Diaziflurane
Photolabeling Reagent
Length = 170
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 42 ALEGVCHFFRELAEEKREGAERLLKMQNQRGGRAL 76
>pdb|3AF8|X Chain X, Crystal Structure Of Pd(Ally)APO-C126afr
Length = 174
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 43 ALEGVCHFFRELAEEKREGAERLLKMQNQRGGRAL 77
>pdb|2V2N|A Chain A, Mutant R59m Recombinant Horse Spleen Apoferritin
Cocrystallized With Haemin In Acidic Conditions
pdb|2V2O|A Chain A, Mutant R59m Recombinant Horse Spleen Apoferritin
Cocrystallized With Haemin In Basic Conditions
pdb|2V2S|A Chain A, Mutant R59m Recombinant Horse Spleen Apoferritin
Crystallized In Acidic Conditions
Length = 174
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 AAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAF 79
A G + EL E E A +LK+QN RG A
Sbjct: 43 ALEGVCHFFRELAEEKMEGAERLLKMQNQRGGRAL 77
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 44 AAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAFHLAAALGNEAMCHCM 94
AA AGQ + V I+ N ++V +D+G T HLAA +G+ + +
Sbjct: 21 AARAGQ----DDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVL 66
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRG 75
+GD+ A AG I + EIM E+ S ++ D+G
Sbjct: 577 TGDSKRTAEAVAGTLGIKKVVAEIMPEDKSRIVSELKDKG 616
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.126 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,603,143
Number of Sequences: 62578
Number of extensions: 79629
Number of successful extensions: 424
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 105
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)