BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038149
(844 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 211/841 (25%), Positives = 334/841 (39%), Gaps = 156/841 (18%)
Query: 21 EIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDD 80
EI I S D+ +L W N+ CT++ + C ++LS S
Sbjct: 13 EIHQLI-SFKDVLPDKNLLPDWSSNKNP--CTFDGVTCRDDKVTSIDLS--------SKP 61
Query: 81 VNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNES 140
+N GF ++ SL + LS++ G + S SL L ++ NS +
Sbjct: 62 LNVGFSAVSSSLLSLTGLESLF-LSNSHING--SVSGFKCSASLTSL---DLSRNSLSGP 115
Query: 141 LVPXXXXXXXXXXXFLQGNSFSEGFKHN-KGLVNLRNLEVLDLSGNRITGS-----LIMQ 194
+ FL +S + F G + L +LEVLDLS N I+G+ ++
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175
Query: 195 GICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL 254
G +LK+L I+ N+ G + +S L LD+SSN S +P + + ++L++L
Sbjct: 176 GCGELKHLA---ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHL 228
Query: 255 SLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIP 314
+ N F ++ + + L++ +S Q P LP L+ L+L +G IP
Sbjct: 229 DISGNKLSGDFSRAI-STCTELKLLNISSNQF-VGPIPPLPLKSLQYLSLAENKFTGEIP 286
Query: 315 RFLQYQYD-FRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN--SKRNL 371
FL D +DLS N+ P + + + NNF +G L + R L
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGL 345
Query: 372 PHLVISNNSFIGKLPENF------------------GLILPELVY--------LDMSQNS 405
L +S N F G+LPE+ G ILP L L + N
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 406 FEGSIPPSMGYMERXXXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMN 465
F G IPP++ +P L S L + L N +G+I + M
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 466 LAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN 525
+ L L L+ N TG + GL N ++L + +SNN L+G++P+WIG+ NL +L +S N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 526 SFEGDVSVQLSNLEVARILDISENKLYGPL---------EFSSNH-SSLRYLFPHNNSLS 575
SF G++ +L + LD++ N G + + ++N + RY++ N+ +
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584
Query: 576 GTIPNAXXXXXXXXXXDLRDNEFSGNIAHLINEDSXXXXXXXXXXXXXXXIPEPLCHLRK 635
A EF G + +N S +
Sbjct: 585 KECHGAGNLL-----------EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 636 LAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKN 695
+ +D+SYN L+G IP E+ M
Sbjct: 634 MMFLDMSYNMLSGYIPK-----------------------------------EIGSMP-- 656
Query: 696 RYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKM 755
Y+ L+L N+++G IP E+G L ++ L+LS+N L G IP++ S L M
Sbjct: 657 -----------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 756 TESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLC 815
+DL S NNLSG +P GQF F + + NP LC
Sbjct: 706 LTEIDL------------------------SNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741
Query: 816 G 816
G
Sbjct: 742 G 742
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 180 LDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGN 239
LD+S N ++G I + I + L LN+ N+ G +P + +L L +LDLSSNKL G
Sbjct: 637 LDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 240 LPLSVIANLTSLEYLSLFDNHFQ---------ESFPLSVLANHSRLEVFQLSR 283
+P ++ A LT L + L +N+ E+FP + N+ L + L R
Sbjct: 696 IPQAMSA-LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 211/841 (25%), Positives = 334/841 (39%), Gaps = 156/841 (18%)
Query: 21 EIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDD 80
EI I S D+ +L W N+ CT++ + C ++LS S
Sbjct: 10 EIHQLI-SFKDVLPDKNLLPDWSSNKNP--CTFDGVTCRDDKVTSIDLS--------SKP 58
Query: 81 VNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNES 140
+N GF ++ SL + LS++ G + S SL L ++ NS +
Sbjct: 59 LNVGFSAVSSSLLSLTGLESLF-LSNSHING--SVSGFKCSASLTSL---DLSRNSLSGP 112
Query: 141 LVPXXXXXXXXXXXFLQGNSFSEGFKHN-KGLVNLRNLEVLDLSGNRITGS-----LIMQ 194
+ FL +S + F G + L +LEVLDLS N I+G+ ++
Sbjct: 113 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 172
Query: 195 GICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL 254
G +LK+L I+ N+ G + +S L LD+SSN S +P + + ++L++L
Sbjct: 173 GCGELKHLA---ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHL 225
Query: 255 SLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIP 314
+ N F ++ + + L++ +S Q P LP L+ L+L +G IP
Sbjct: 226 DISGNKLSGDFSRAI-STCTELKLLNISSNQF-VGPIPPLPLKSLQYLSLAENKFTGEIP 283
Query: 315 RFLQYQYD-FRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN--SKRNL 371
FL D +DLS N+ P + + + NNF +G L + R L
Sbjct: 284 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGL 342
Query: 372 PHLVISNNSFIGKLPENF------------------GLILPELVY--------LDMSQNS 405
L +S N F G+LPE+ G ILP L L + N
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 406 FEGSIPPSMGYMERXXXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMN 465
F G IPP++ +P L S L + L N +G+I + M
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 466 LAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRN 525
+ L L L+ N TG + GL N ++L + +SNN L+G++P+WIG+ NL +L +S N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 526 SFEGDVSVQLSNLEVARILDISENKLYGPL---------EFSSNH-SSLRYLFPHNNSLS 575
SF G++ +L + LD++ N G + + ++N + RY++ N+ +
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 581
Query: 576 GTIPNAXXXXXXXXXXDLRDNEFSGNIAHLINEDSXXXXXXXXXXXXXXXIPEPLCHLRK 635
A EF G + +N S +
Sbjct: 582 KECHGAGNLL-----------EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 630
Query: 636 LAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKN 695
+ +D+SYN L+G IP E+ M
Sbjct: 631 MMFLDMSYNMLSGYIPK-----------------------------------EIGSMP-- 653
Query: 696 RYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKM 755
Y+ L+L N+++G IP E+G L ++ L+LS+N L G IP++ S L M
Sbjct: 654 -----------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 756 TESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLC 815
+DL S NNLSG +P GQF F + + NP LC
Sbjct: 703 LTEIDL------------------------SNNNLSGPIPEMGQFETFPPAKFLNNPGLC 738
Query: 816 G 816
G
Sbjct: 739 G 739
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 180 LDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGN 239
LD+S N ++G I + I + L LN+ N+ G +P + +L L +LDLSSNKL G
Sbjct: 634 LDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 240 LPLSVIANLTSLEYLSLFDNHFQ---------ESFPLSVLANHSRLEVFQLSR 283
+P ++ A LT L + L +N+ E+FP + N+ L + L R
Sbjct: 693 IPQAMSA-LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 89/217 (41%), Gaps = 53/217 (24%)
Query: 626 IPEPLCHLRKLAIVDISYNTLNGPIP---SCFTNISLWMEKGNYYNSTLSLALPAEDNRE 682
IP+ L ++ L +D SYN L+G +P S N+ GN +S A+P
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN----RISGAIP------ 166
Query: 683 SSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFL 742
+SY G K T + +S N LTG IP L + ++LS N L
Sbjct: 167 ---------------DSY-GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 743 SGSIPRSFSNLKMTE-----------------------SMDLSYNKLNGQIPPELGELSF 779
G F + K T+ +DL N++ G +P L +L F
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 780 LAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCG 816
L NVS+NNL G +P G FD S Y N LCG
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL 766
Y+ G+ N L G IP I L ++H L +++ +SG+IP S +K ++D SYN L
Sbjct: 82 YIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 767 NGQIPPELGELSFLAIFNVSYNNLSGTVPNK-GQFA 801
+G +PP + L L N +SG +P+ G F+
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 38/249 (15%)
Query: 364 LPNSKRNLPHL----VISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMER 419
+P+S NLP+L + N+ +G +P L +L YL ++ + G+IP
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIP-------- 118
Query: 420 XXXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQF 479
FL+ +L ++ S+N G + P +L LV + + N+
Sbjct: 119 -----------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 480 TGRLEVGLLNASSLYV-LDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNL 538
+G + + S L+ + +S N L+G++P NL + +SRN EGD SV +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 539 EVARILDISENKL---YGPLEFSSNHSSLRYLFPHNNSLSGTIPNAXXXXXXXXXXDLRD 595
+ + + +++N L G + S N + L NN + GT+P ++
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL---RNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 596 NEFSGNIAH 604
N G I
Sbjct: 278 NNLCGEIPQ 286
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 110/266 (41%), Gaps = 32/266 (12%)
Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSG-NRITGSLIMQGICDLKNLVELNINENEFDG 214
L G + + + L NL L L + G N + G I I L L L I G
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSG 115
Query: 215 LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHS 274
+P LS + L LD S N LSG LP S I++L +L ++ N + P S +
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 275 RLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLV 334
+SR + ++G IP + ++DLS N++
Sbjct: 175 LFTSMTISRNR-----------------------LTGKIPPTFA-NLNLAFVDLS-RNML 209
Query: 335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILP 394
+ + L ++ + + L N L +L +NL L + NN G LP+ GL
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ--GLTQL 267
Query: 395 ELVY-LDMSQNSFEGSIPPSMGYMER 419
+ ++ L++S N+ G IP G ++R
Sbjct: 268 KFLHSLNVSFNNLCGEIPQG-GNLQR 292
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 711 LDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQI 770
L ++ ++G IP + + + L+ S N LSG++P S S+L + N+++G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 771 PPELGELSFL-AIFNVSYNNLSGTVPNKGQFANFD 804
P G S L +S N L+G +P FAN +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPT--FANLN 198
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 131/317 (41%), Gaps = 73/317 (23%)
Query: 177 LEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL-------------------- 216
++ LDL+ + G + GI + +L +L +N N FD L
Sbjct: 279 VQELDLTAAHLNG--LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMR 336
Query: 217 -----PQCLSNLTYLRVLDLSSNKLSGNLPLSV-IANLTSLEYLSLF--------DNHFQ 262
+CL L L+ LDLS + + + ++ + NL L+YL+L D F+
Sbjct: 337 KLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFK 396
Query: 263 ESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYD 322
E L +L + L V+ + P+ L+VLNL HC + + L D
Sbjct: 397 ECPQLELLD-------VAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQD 449
Query: 323 FRYIDLSDNNLVD--TFPTWLLQNNTKLEIMFLFN-NFLTGNLQLPNSKRNLPHLVISNN 379
R+++L N+ D T LLQ LEI+ L + N L+ + Q + RN+ HL +S+N
Sbjct: 450 LRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHN 509
Query: 380 SFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERXXXXXXXXXXXXRDLPKHFL 439
S G + + + +YL+M+ N+ R +P H L
Sbjct: 510 SLTGDSMDALSHL--KGLYLNMASNNI-------------------------RIIPPHLL 542
Query: 440 TSCVSLEFMNLSHNYFD 456
+ +NLSHN D
Sbjct: 543 PALSQQSIINLSHNPLD 559
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 27/166 (16%)
Query: 96 FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXXXXF 155
F+E L+L D F ++ ++L L++LN+ + + S
Sbjct: 395 FKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLN 454
Query: 156 LQGNSFSEGFKHNKGLVN-------------------------LRNLEVLDLSGNRITGS 190
LQGNSF +G L+ LRN+ LDLS N +TG
Sbjct: 455 LQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD 514
Query: 191 LIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKL 236
M + LK L LN+ N + P L L+ +++LS N L
Sbjct: 515 -SMDALSHLKGLY-LNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 510 WIGKFSNLDVLLMSRNSFEG--DVSVQLSNLEVARILDIS 547
W+G F + D ++ +FEG D+SV+ NL+ R D+S
Sbjct: 230 WLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLS 269
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
LQ SF K L NL LE LD+S N+++ ++ + +L++L+ N N+ +
Sbjct: 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDI 214
Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
P L LT L L L+ N+L + +A+LT+L L L +N PLS L +
Sbjct: 215 TP--LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 269
Query: 276 LEVF--QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
L++ Q+S + P L L L + P + + Y+ L NN+
Sbjct: 270 LKLGANQISNIS------PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321
Query: 334 VDTFPTWLLQNNTKLEIMFLFNN 356
D P L TKL+ +F +NN
Sbjct: 322 SDISPVSSL---TKLQRLFFYNN 341
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
+V L +R+ G + G+ L NL ++N + N+ + P L NLT L + +++N+++
Sbjct: 47 QVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103
Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
PL ANLT+L L+LF+N + PL L N +RLE+
Sbjct: 104 DITPL---ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 141
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 27/135 (20%)
Query: 164 GFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQC---- 219
G K G+ L NL ++ S N++T + + +L LV++ +N N+ + P
Sbjct: 57 GIKSIDGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTN 113
Query: 220 ----------------LSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
L NLT L L+LSSN +S +S ++ LTSL+ LS F N +
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLS-FGNQVTD 169
Query: 264 SFPLSVLANHSRLEV 278
PL+ L RL++
Sbjct: 170 LKPLANLTTLERLDI 184
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 26/126 (20%)
Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP-QCLSNLTYLR-- 227
L L L L L N+I+ + G+ L NL +NEN+ + + P L NLTYL
Sbjct: 261 LSGLTKLTELKLGANQISNISPLAGLTALTNL---ELNENQLEDISPISNLKNLTYLTLY 317
Query: 228 ---VLDLS--------------SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVL 270
+ D+S +NK+S +S +ANLT++ +LS N + PL+ L
Sbjct: 318 FNNISDISPVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISDLTPLANL 374
Query: 271 ANHSRL 276
++L
Sbjct: 375 TRITQL 380
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 26/154 (16%)
Query: 445 LEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS 504
L +N S+N I P NL KLV + +N+NQ L N ++L L + NN ++
Sbjct: 70 LTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQIT 125
Query: 505 GQLPRWIGKFSNLDVLLMSRNS------FEGDVSVQ-------------LSNLEVARILD 545
P + +NL+ L +S N+ G S+Q L+NL LD
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183
Query: 546 ISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIP 579
IS NK+ + + ++L L NN +S P
Sbjct: 184 ISSNKV-SDISVLAKLTNLESLIATNNQISDITP 216
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
+V L +R+ G + G+ L NL ++N + N+ + P L NLT L + +++N+++
Sbjct: 46 QVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 102
Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
PL ANLT+L L+LF+N + PL L N +RLE+
Sbjct: 103 DITPL---ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 140
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
LQ SF K L NL LE LD+S N+++ ++ + +L++L+ N N+ +
Sbjct: 157 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDI 213
Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
P L LT L L L+ N+L + +A+LT+L L L +N PLS L +
Sbjct: 214 TP--LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 268
Query: 276 LEVF--QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
L++ Q+S + P L L L + P + + Y+ L NN+
Sbjct: 269 LKLGANQISNIS------PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 320
Query: 334 VDTFPTWLLQNNTKLEIMFLFNN 356
D P L TKL+ +F NN
Sbjct: 321 SDISPVSSL---TKLQRLFFANN 340
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 27/135 (20%)
Query: 164 GFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQC---- 219
G K G+ L NL ++ S N++T + + +L LV++ +N N+ + P
Sbjct: 56 GIKSIDGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTN 112
Query: 220 ----------------LSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
L NLT L L+LSSN +S +S ++ LTSL+ LS F N +
Sbjct: 113 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLS-FGNQVTD 168
Query: 264 SFPLSVLANHSRLEV 278
PL+ L RL++
Sbjct: 169 LKPLANLTTLERLDI 183
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
Query: 170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVL 229
GL L NLE L+ N++ + I +LKNL L + N + P +S+LT L+ L
Sbjct: 284 GLTALTNLE---LNENQLED---ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 335
Query: 230 DLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRL 276
++NK+S +S +ANLT++ +LS N + PL+ L ++L
Sbjct: 336 FFANNKVSD---VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 379
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 26/154 (16%)
Query: 445 LEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS 504
L +N S+N I P NL KLV + +N+NQ L N ++L L + NN ++
Sbjct: 69 LTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQIT 124
Query: 505 GQLPRWIGKFSNLDVLLMSRNS------FEGDVSVQ-------------LSNLEVARILD 545
P + +NL+ L +S N+ G S+Q L+NL LD
Sbjct: 125 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 182
Query: 546 ISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIP 579
IS NK+ + + ++L L NN +S P
Sbjct: 183 ISSNKV-SDISVLAKLTNLESLIATNNQISDITP 215
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
+V L +R+ G + G+ L NL ++N + N+ + P L NLT L + +++N+++
Sbjct: 42 QVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 98
Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
PL ANLT+L L+LF+N + PL L N +RLE+
Sbjct: 99 DITPL---ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
LQ +F K L NL LE LD+S N+++ ++ + +L++L+ N N+ +
Sbjct: 153 LQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDI 209
Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
P L LT L L L+ N+L + +A+LT+L L L +N PLS L +
Sbjct: 210 TP--LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 264
Query: 276 LEVF--QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
L++ Q+S + P L L L + P + + Y+ L NN+
Sbjct: 265 LKLGANQISNIS------PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 316
Query: 334 VDTFPTWLLQNNTKLEIMFLFNN 356
D P L TKL+ +F +NN
Sbjct: 317 SDISPVSSL---TKLQRLFFYNN 336
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 27/135 (20%)
Query: 164 GFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQC---- 219
G K G+ L NL ++ S N++T + + +L LV++ +N N+ + P
Sbjct: 52 GIKSIDGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTN 108
Query: 220 ----------------LSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
L NLT L L+LSSN +S +S ++ LTSL+ L+ F N +
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLN-FGNQVTD 164
Query: 264 SFPLSVLANHSRLEV 278
PL+ L RL++
Sbjct: 165 LKPLANLTTLERLDI 179
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 26/126 (20%)
Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP-QCLSNLTYLR-- 227
L L L L L N+I+ + G+ L NL +NEN+ + + P L NLTYL
Sbjct: 256 LSGLTKLTELKLGANQISNISPLAGLTALTNL---ELNENQLEDISPISNLKNLTYLTLY 312
Query: 228 ---VLDLS--------------SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVL 270
+ D+S +NK+S +S +ANLT++ +LS N + PL+ L
Sbjct: 313 FNNISDISPVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISDLTPLANL 369
Query: 271 ANHSRL 276
++L
Sbjct: 370 TRITQL 375
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 26/154 (16%)
Query: 445 LEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS 504
L +N S+N I P NL KLV + +N+NQ L N ++L L + NN ++
Sbjct: 65 LTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQIT 120
Query: 505 GQLPRWIGKFSNLDVLLMSRNS------FEGDVSVQ-------------LSNLEVARILD 545
P + +NL+ L +S N+ G S+Q L+NL LD
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLD 178
Query: 546 ISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIP 579
IS NK+ + + ++L L NN +S P
Sbjct: 179 ISSNKV-SDISVLAKLTNLESLIATNNQISDITP 211
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
+V L +R+ G + G+ L NL ++N + N+ + P L NLT L + +++N+++
Sbjct: 42 QVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 98
Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
PL ANLT+L L+LF+N + PL L N +RLE+
Sbjct: 99 DITPL---ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 21/190 (11%)
Query: 169 KGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV 228
K L NL LE LD+S N+++ ++ + +L++L+ N N+ + P L LT L
Sbjct: 167 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDE 221
Query: 229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVF--QLSRLQV 286
L L+ N+L + +A+LT+L L L +N PLS L + L++ Q+S +
Sbjct: 222 LSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS- 277
Query: 287 ETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNT 346
P L L L + P + + Y+ L NN+ D P L T
Sbjct: 278 -----PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL---T 327
Query: 347 KLEIMFLFNN 356
KL+ +F +NN
Sbjct: 328 KLQRLFFYNN 337
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 26/126 (20%)
Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP-QCLSNLTYLR-- 227
L L L L L N+I+ + G+ L NL +NEN+ + + P L NLTYL
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNL---ELNENQLEDISPISNLKNLTYLTLY 313
Query: 228 ---VLDLS--------------SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVL 270
+ D+S +NK+S +S +ANLT++ +LS N + PL+ L
Sbjct: 314 FNNISDISPVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISDLTPLANL 370
Query: 271 ANHSRL 276
++L
Sbjct: 371 TRITQL 376
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 170 GLVN-LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV 228
G+ N L +LEVL ++GN + + +L+NL L++++ + + L P ++L+ L+V
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
L+++SN+L ++P + LTSL+ + L N + S P
Sbjct: 499 LNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 131/537 (24%), Positives = 206/537 (38%), Gaps = 99/537 (18%)
Query: 93 FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXX 152
F F EL VLDLS + E+ AY +SL L L + N
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDG-AY---QSLSHLSTLILTGNPIQS------------- 90
Query: 153 XXFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
L +FS GL +L+ L ++ + SL I LK L ELN+ N
Sbjct: 91 ---LALGAFS-------GLSSLQKLVAVETN----LASLENFPIGHLKTLKELNVAHNLI 136
Query: 213 DGL-LPQCLSNLTYLRVLDLSSNKLSG----------------------NLPLSVIA--- 246
LP+ SNLT L LDLSSNK+ P++ I
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 247 -NLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETE-NFPWLPKFQLKVLNL 304
L L+L +N + + + + LEV +L + E N K L+ L
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL-- 254
Query: 305 RHCNISGTIPRFLQYQYDFRYIDLSD-NNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ 363
CN+ TI F D+ D+ D N + ++ L + T + NF +L+
Sbjct: 255 --CNL--TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310
Query: 364 LPNSK---------RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQN--SFEGSI-- 410
L N K ++L L ++N E + LP L +LD+S+N SF+G
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 411 ----PPSMGYMERXXXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSH-NYFDGQIFPKYMN 465
S+ Y++ L + LE ++ H N F +++
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQ--------LEHLDFQHSNLKQMSEFSVFLS 419
Query: 466 LAKLVFLFLNDNQFTGRLEVGLLNA-SSLYVLDVSNNMLSGQ-LPRWIGKFSNLDVLLMS 523
L L++L ++ T G+ N SSL VL ++ N LP + NL L +S
Sbjct: 420 LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 524 RNSFEGDVSVQLSNLEVARILDISENKLYG-PLEFSSNHSSLRYLFPHNNSLSGTIP 579
+ E ++L ++L+++ N+L P +SL+ ++ H N + P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 726 IGYLGEIHALNLSNNFL-SGSIPRSFSNLKMTESMDLSYNKL 766
IG+L + LN+++N + S +P FSNL E +DLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
+V L +R+ G + G+ L NL ++N + N+ + P L NLT L + +++N+++
Sbjct: 42 QVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 98
Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
PL ANLT+L L+LF+N + PL L N +RLE+
Sbjct: 99 DITPL---ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 21/190 (11%)
Query: 169 KGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV 228
K L NL LE LD+S N+++ ++ + +L++L+ N N+ + P L LT L
Sbjct: 167 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDE 221
Query: 229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVF--QLSRLQV 286
L L+ N+L + +A+LT+L L L +N PLS L + L++ Q+S +
Sbjct: 222 LSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS- 277
Query: 287 ETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNT 346
P L L L + P + + Y+ L NN+ D P L T
Sbjct: 278 -----PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL---T 327
Query: 347 KLEIMFLFNN 356
KL+ +F +NN
Sbjct: 328 KLQRLFFYNN 337
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 26/126 (20%)
Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP-QCLSNLTYLR-- 227
L L L L L N+I+ + G+ L NL +NEN+ + + P L NLTYL
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNL---ELNENQLEDISPISNLKNLTYLTLY 313
Query: 228 ---VLDLS--------------SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVL 270
+ D+S +NK+S +S +ANLT++ +LS N + PL+ L
Sbjct: 314 FNNISDISPVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISDLTPLANL 370
Query: 271 ANHSRL 276
++L
Sbjct: 371 TRITQL 376
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
+V L +R+ G + G+ L NL ++N + N+ + P L NLT L + +++N+++
Sbjct: 42 QVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 98
Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
PL ANLT+L L+LF+N + PL L N +RLE+
Sbjct: 99 DITPL---ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 21/190 (11%)
Query: 169 KGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV 228
K L NL LE LD+S N+++ ++ + +L++L+ N N+ + P L LT L
Sbjct: 167 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDE 221
Query: 229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVF--QLSRLQV 286
L L+ N+L + +A+LT+L L L +N PLS L + L++ Q+S +
Sbjct: 222 LSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS- 277
Query: 287 ETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNT 346
P L L L + P + + Y+ L NN+ D P L T
Sbjct: 278 -----PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL---T 327
Query: 347 KLEIMFLFNN 356
KL+ +F NN
Sbjct: 328 KLQRLFFSNN 337
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
Query: 170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVL 229
GL L NLE L+ N++ + I +LKNL L + N + P +S+LT L+ L
Sbjct: 281 GLTALTNLE---LNENQLED---ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 332
Query: 230 DLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRL 276
S+NK+S +S +ANLT++ +LS N + PL+ L ++L
Sbjct: 333 FFSNNKVSD---VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
+V L +R+ G + G+ L NL ++N + N+ + P L NLT L + +++N+++
Sbjct: 42 QVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 98
Query: 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEV 278
PL ANLT+L L+LF+N + PL L N +RLE+
Sbjct: 99 DITPL---ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 156 LQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL 215
LQ +F K L NL LE LD+S N+++ ++ + +L++L+ N N+ +
Sbjct: 153 LQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDI 209
Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
P L LT L L L+ N+L + +A+LT+L L L +N PLS L +
Sbjct: 210 TP--LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 264
Query: 276 LEVF--QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
L++ Q+S + P L L L + P + + Y+ L NN+
Sbjct: 265 LKLGANQISNIS------PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 316
Query: 334 VDTFPTWLLQNNTKLEIMFLFNN 356
D P L TKL+ +F NN
Sbjct: 317 SDISPVSSL---TKLQRLFFSNN 336
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 27/135 (20%)
Query: 164 GFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQC---- 219
G K G+ L NL ++ S N++T + + +L LV++ +N N+ + P
Sbjct: 52 GIKSIDGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTN 108
Query: 220 ----------------LSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
L NLT L L+LSSN +S +S ++ LTSL+ L+ F N +
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLN-FGNQVTD 164
Query: 264 SFPLSVLANHSRLEV 278
PL+ L RL++
Sbjct: 165 LKPLANLTTLERLDI 179
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
Query: 170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVL 229
GL L NLE L+ N++ + I +LKNL L + N + P +S+LT L+ L
Sbjct: 280 GLTALTNLE---LNENQLED---ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 331
Query: 230 DLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRL 276
S+NK+S +S +ANLT++ +LS N + PL+ L ++L
Sbjct: 332 FFSNNKVSD---VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 375
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 26/154 (16%)
Query: 445 LEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS 504
L +N S+N I P NL KLV + +N+NQ L N ++L L + NN ++
Sbjct: 65 LTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQIT 120
Query: 505 GQLPRWIGKFSNLDVLLMSRNS------FEGDVSVQ-------------LSNLEVARILD 545
P + +NL+ L +S N+ G S+Q L+NL LD
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLD 178
Query: 546 ISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIP 579
IS NK+ + + ++L L NN +S P
Sbjct: 179 ISSNKV-SDISVLAKLTNLESLIATNNQISDITP 211
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 111/261 (42%), Gaps = 44/261 (16%)
Query: 170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFD-GLLPQCLSNLTYLRV 228
GLV L L+ L LS N+ +L + +L L+I N L CL NL LR
Sbjct: 296 GLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354
Query: 229 LDLSSNKLSG----NLPLSVIANLTSL-----EYLSLFDNHFQESFPLSVLANHSRLEVF 279
LDLS + + NL L +++L SL E LSL F+E L +L
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD-------L 407
Query: 280 QLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPT 339
+RL+V+ P+ LKVLNL H +D+S L D P
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSH-----------------SLLDISSEQLFDGLPA 450
Query: 340 WLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSF--IGKLPENFGLILPELV 397
LQ+ + N+F GN+Q NS + L L I SF + + ++ L +
Sbjct: 451 --LQH-----LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503
Query: 398 YLDMSQNSFEGSIPPSMGYME 418
++D+S N S ++ +++
Sbjct: 504 HVDLSHNRLTSSSIEALSHLK 524
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 44/222 (19%)
Query: 40 VSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQEL 99
+S D TSDCC + N + + + LS + + + ++ F+E
Sbjct: 357 LSHDDIETSDCCNLQLR--NLSHLQSLNLSYNEPLSLKTE---------------AFKEC 399
Query: 100 HVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXXXXFLQGN 159
L+L D F + A + ++L LK+LN+ ++ + S LQGN
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 160 SFSEG-FKHNKGLVNLRNLEVL------------------------DLSGNRITGSLIMQ 194
F +G + L L LE+L DLS NR+T S I +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-E 518
Query: 195 GICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKL 236
+ LK + LN+ N +LP L L+ R ++L N L
Sbjct: 519 ALSHLKG-IYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 703 DVLKYMTGLDLSSNEL-TGDI--PSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESM 759
D L + L+L N G+I + + LG + L LS LS +F++LKM +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505
Query: 760 DLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDES-NYRGNPYLC 815
DLS+N+L L L + + N++ N++S +P+ + + N R NP C
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 123/322 (38%), Gaps = 64/322 (19%)
Query: 85 FPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPX 144
F I+ + F F +L LDL+ +G + L LK L + N F++
Sbjct: 263 FSDISSTTFQCFTQLQELDLTATHLKGLPSGM-----KGLNLLKKLVLSVNHFDQLCQIS 317
Query: 145 XXXXXXXXXXFLQGNSFSEGFKHNKG-LVNLRNLEVLDLSGNRITGS-LIMQGICDLKNL 202
+++GN + G L L NL+ LDLS N I S + +L +L
Sbjct: 318 AANFPSLTHLYIRGNV--KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHL 375
Query: 203 VELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLS------------------- 243
LN++ NE GL Q L +LDL+ +L N P S
Sbjct: 376 QTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLD 435
Query: 244 -----VIANLTSLEYLSLFDNHFQES--FPLSVLANHSRLEVFQLSR---LQVETENFPW 293
++A L L +L+L NHFQ+ ++L LEV LS L ++ + F
Sbjct: 436 TSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHS 495
Query: 294 LPKF-------------------QLK--VLNLRHCNISGTIPRFLQYQYDFRYIDLSDNN 332
L K LK LNL +I+ PR L I+LS N
Sbjct: 496 LGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNP 555
Query: 333 LVDT-----FPTWLLQNNTKLE 349
L T F TW +N KLE
Sbjct: 556 LDCTCSNIHFLTWYKENLHKLE 577
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 86/360 (23%), Positives = 138/360 (38%), Gaps = 90/360 (25%)
Query: 190 SLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLT 249
S +++G+C++ ++ LN+ E+ F + T L+ LDL++ L G LP S + L
Sbjct: 242 SAMLKGLCEM-SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LP-SGMKGLN 298
Query: 250 SLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNI 309
L+ L L NHF + Q+ NFP +L H I
Sbjct: 299 LLKKLVLSVNHFDQ-------------------LCQISAANFP----------SLTHLYI 329
Query: 310 SGTIPRF------LQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ 363
G + + L+ + + +DLS N++ + +LQ
Sbjct: 330 RGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASD---------------------CCSLQ 368
Query: 364 LPNSKRNLPHLV---ISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERX 420
L +NL HL +S+N +G + F P+L LD++ + P S
Sbjct: 369 L----KNLSHLQTLNLSHNEPLGLQSQAFKEC-PQLELLDLAFTRLHINAPQSPFQNLHF 423
Query: 421 XXXXXXXXXXXRDLPKHFLTSCVSLEFMNLSHNYF-DGQIFPKYMNLAKLVFLFLNDNQF 479
+H L L +NL N+F DG I NL + V
Sbjct: 424 LQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTI--TKTNLLQTV--------- 472
Query: 480 TGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLE 539
G LEV +L++ L +D Q +GK S++D +S NS D LS+L+
Sbjct: 473 -GSLEVLILSSCGLLSID-------QQAFHSLGKMSHVD---LSHNSLTCDSIDSLSHLK 521
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 705 LKYMTGLDLSSNEL-TGDIPS-EIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLS 762
L + LDLS N++ D S ++ L + LNLS+N G ++F E +DL+
Sbjct: 346 LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 763 YNKLNGQIPPE-LGELSFLAIFNVSY 787
+ +L+ P L FL + N++Y
Sbjct: 406 FTRLHINAPQSPFQNLHFLQVLNLTY 431
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN 764
L M+ +DLS N LT D + +L I+ LNL+ N ++ PR L +++LS+N
Sbjct: 496 LGKMSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHN 554
Query: 765 KLN 767
L+
Sbjct: 555 PLD 557
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 188 TGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIAN 247
TG ++G+ L NL+ L + +N+ L P L NLT + L+LS N L +S IA
Sbjct: 51 TGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN---VSAIAG 105
Query: 248 LTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHC 307
L S++ L L + PL+ L+N L+V L Q+ T P L+ L++ +
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSN---LQVLYLDLNQI-TNISPLAGLTNLQYLSIGNA 161
Query: 308 NISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQN 344
+S P L + DN + D P L N
Sbjct: 162 QVSDLTP--LANLSKLTTLKADDNKISDISPLASLPN 196
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLD 230
L L NL+VL L N+IT + + L NL L+I + L P L+NL+ L L
Sbjct: 125 LAGLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179
Query: 231 LSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLS 282
NK+S PL+ + NL + L +N + P LAN S L + L+
Sbjct: 180 ADDNKISDISPLASLPNLIEVH---LKNNQISDVSP---LANTSNLFIVTLT 225
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
+LDL NRI +L +L EL +NEN + P +NL LR L L SN+L
Sbjct: 35 RLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 238 GNLPLSVIANLTSLEYLS--------LFDNHFQESFPLS---------VLANHSRLEVF- 279
+PL V L++L L L D FQ+ + L V +H
Sbjct: 94 L-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 280 QLSRLQVETENFPWLPKFQLK------VLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL 333
L +L +E N +P L VL LRH NI+ + Y + +++S
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 334 VDTF 337
+DT
Sbjct: 213 LDTM 216
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 188 TGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIAN 247
TG ++GI L NL+ L + +N+ L P L NLT + L+LS N L +S IA
Sbjct: 57 TGVTTIEGIQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKN---VSAIAG 111
Query: 248 LTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQV 286
L S++ L L + PL+ L+N L+V L Q+
Sbjct: 112 LQSIKTLDLTSTQITDVTPLAGLSN---LQVLYLDLNQI 147
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLD 230
L L NL+VL L N+IT + + L NL L+I N+ + L P L+NL+ L L
Sbjct: 131 LAGLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLR 185
Query: 231 LSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLAN 272
NK+S PL+ + NL + L DN + PL+ L+N
Sbjct: 186 ADDNKISDISPLASLPNLIEVH---LKDNQISDVSPLANLSN 224
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLD 230
L NL + L+LSGN + + I L+++ L++ + + P L+ L+ L+VL
Sbjct: 87 LKNLTKITELELSGNPLKN---VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 141
Query: 231 LSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQ 280
L N+++ PL A LT+L+YLS+ +N + P LAN S+L +
Sbjct: 142 LDLNQITNISPL---AGLTNLQYLSIGNNQVNDLTP---LANLSKLTTLR 185
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 174 LRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLS 232
L NL L+L+ N++ + +G+ D L NL EL+++ N+ L LT L+ L L
Sbjct: 132 LTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
Query: 233 SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
N+L ++P V LTSL+Y+ L DN + + P
Sbjct: 190 QNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 174 LRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLS 232
L NL+ L L N++ + G+ D L NL LN+ N+ L LT L LDLS
Sbjct: 108 LTNLKELVLVENQLQS--LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 233 SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL 281
N+L +LP V LT L+ L L+ N + S P V + L+ L
Sbjct: 166 YNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL 212
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 72/183 (39%), Gaps = 10/183 (5%)
Query: 181 DLSGNRITGSLIMQGICDLKNLVELN----INENEFDGLLPQCLSNLTYLRVLDLSSNKL 236
D I +L + + D ELN I N D Q + L +R L L NKL
Sbjct: 16 DAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL 75
Query: 237 SGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPK 296
+S + LT+L YL L N Q S P V + L+ L Q+++ K
Sbjct: 76 HD---ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 297 FQ-LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFN 355
L LNL H + + +DLS N L + P + T+L+ + L+
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQ 190
Query: 356 NFL 358
N L
Sbjct: 191 NQL 193
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 25/161 (15%)
Query: 444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL--NASSLYVLDVSNN 501
S F+N + N F +F L +L L L N +V L+ N SSL LDVS N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 502 ML-SGQLPRWIGKFSNLDVLLMSRNSFEGDV------SVQLSNLEVARIL----DISENK 550
L S R ++ VL +S N G V V++ +L RI+ D++ +
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQ 473
Query: 551 LYGPLEFSSNH------------SSLRYLFPHNNSLSGTIP 579
L +SN +SL+Y++ H+N T P
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 130 LNIGYNSFNESLVPXXXXXXXXXXXFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITG 189
LN N F +S+ LQ N FK N+ +LE LD+S N +
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 190 SLIMQGICDLKNLVELNINENEFDGLLPQCL---------------------SNLTYLRV 228
+ ++++ LN++ N G + +CL ++L L+
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQE 477
Query: 229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
L+++SN+L +P V LTSL+Y+ L DN + + P
Sbjct: 478 LNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 688 EVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGE-IHALNLSNNFLSGSI 746
+V M KN + + LD+S N L E I LNLS+N L+GS+
Sbjct: 394 KVALMTKN---------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Query: 747 PRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDES 806
R + +DL N++ IP ++ L L NV+ N L +VP+ G F
Sbjct: 445 FRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPD-GVFDRLTSL 499
Query: 807 NY---RGNPYLCG-PAVR 820
Y NP+ C P +R
Sbjct: 500 QYIWLHDNPWDCTCPGIR 517
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 63/142 (44%), Gaps = 24/142 (16%)
Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQ-------------GICDLKN 201
FL GN ++ K L NL+NL L L N+I ++ GI D+
Sbjct: 71 FLNGNKLTD----IKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING 126
Query: 202 LVELNINENEFDG----LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
LV L E+ + G LS LT L L L N++S +PL A LT L+ L L
Sbjct: 127 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---AGLTKLQNLYLS 183
Query: 258 DNHFQESFPLSVLANHSRLEVF 279
NH + L+ L N LE+F
Sbjct: 184 KNHISDLRALAGLKNLDVLELF 205
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLD 230
L NL L L++ N+I+ + + DL L LN+ N+ + L+NL+ L L
Sbjct: 239 LANLSQLTWLEIGTNQISD---INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLF 293
Query: 231 LSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLA 271
L++N+L GN VI LT+L L L NH + PL+ L+
Sbjct: 294 LNNNQL-GNEDXEVIGGLTNLTTLFLSQNHITDIRPLASLS 333
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 22/194 (11%)
Query: 169 KGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN---INENEFDGLLPQCLSNLTY 225
+G+ L NLE L+L+GN+IT I L NLV+L I N+ + L NLT
Sbjct: 60 QGIEYLTNLEYLNLNGNQIT------DISPLSNLVKLTNLYIGTNKITDI--SALQNLTN 111
Query: 226 LRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQ 285
LR L L+ + +S PL ANLT L+L NH LS L+N + L ++ +
Sbjct: 112 LRELYLNEDNISDISPL---ANLTKXYSLNLGANHNLSD--LSPLSNXTGLNYLTVTESK 166
Query: 286 VETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNN 345
V+ + P L L+L + I P L Y N + D P + N
Sbjct: 167 VK-DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANX 220
Query: 346 TKLEIMFLFNNFLT 359
T+L + + NN +T
Sbjct: 221 TRLNSLKIGNNKIT 234
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 174 LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSS 233
L ++ L ++G ++ +QGI L NL LN+N N+ + P LSNL L L + +
Sbjct: 43 LESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGT 97
Query: 234 NKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS 268
NK++ +S + NLT+L L L +++ + PL+
Sbjct: 98 NKITD---ISALQNLTNLRELYLNEDNISDISPLA 129
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIM-------------QGICDLKN 201
FL GN ++ K L NL+NL L L N++ + GI D+
Sbjct: 74 FLNGNKLTDI----KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129
Query: 202 LVELNINENEFDG----LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
LV L E+ + G LS LT L L L N++S +PL A LT L+ L L
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---AGLTKLQNLYLS 186
Query: 258 DNHFQESFPLSVLANHSRLEVF 279
NH + L+ L N LE+F
Sbjct: 187 KNHISDLRALAGLKNLDVLELF 208
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 173 NLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDL 231
+L L+ L L GN++ + G+ D L L EL +N N+ + LT L+ L L
Sbjct: 105 HLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 232 SSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETEN 290
S+N+L ++P L L+ ++LF N F + SR E+ LS+ E N
Sbjct: 163 STNQLQ-SVPHGAFDRLGKLQTITLFGNQF----------DCSRCEILYLSQWIRENSN 210
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 174 LRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLS 232
L +L L+LS N++ + G+ D L L EL +N N+ L LT L+ L L
Sbjct: 75 LTSLTYLNLSTNQLQS--LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Query: 233 SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
N+L ++P V LTSL+Y+ L DN + + P
Sbjct: 133 QNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 174 LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSS 233
L +L L L GN++ SL L +L LN++ N+ L LT L+ L L++
Sbjct: 51 LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 234 NKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL 281
N+L +LP V LT L+ L L+ N +S P V + L+ L
Sbjct: 110 NQLQ-SLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWL 155
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIM-------------QGICDLKN 201
FL GN ++ K L NL+NL L L N++ + GI D+
Sbjct: 94 FLNGNKLTDI----KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 149
Query: 202 LVELNINENEFDG----LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
LV L E+ + G LS LT L L L N++S +PL A LT L+ L L
Sbjct: 150 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---AGLTKLQNLYLS 206
Query: 258 DNHFQESFPLSVLANHSRLEVF 279
NH + L+ L N LE+F
Sbjct: 207 KNHISDLRALAGLKNLDVLELF 228
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 193 MQGICDLKNLVELNINENEFDGLLP-QCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSL 251
+QGI L NL LN++ N+ + P Q L N+T L L+ NKL+ PL ANL +L
Sbjct: 59 VQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLF---LNGNKLTDIKPL---ANLKNL 112
Query: 252 EYLSLFDN 259
+L L +N
Sbjct: 113 GWLFLDEN 120
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIM-------------QGICDLKN 201
FL GN ++ K L NL+NL L L N++ + GI D+
Sbjct: 72 FLNGNKLTDI----KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 127
Query: 202 LVELNINENEFDG----LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
LV L E+ + G LS LT L L L N++S +PL A LT L+ L L
Sbjct: 128 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---AGLTKLQNLYLS 184
Query: 258 DNHFQESFPLSVLANHSRLEVF 279
NH + L+ L N LE+F
Sbjct: 185 KNHISDLRALAGLKNLDVLELF 206
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 692 MAKNRYESYKGDVLKYMTGLD---LSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPR 748
++K++ + V + T L+ L+ NE+ + L + LNLS NFL R
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341
Query: 749 SFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNV 785
F NL E +DLSYN + LG+ SFL + N+
Sbjct: 342 MFENLDKLEVLDLSYNHIRA-----LGDQSFLGLPNL 373
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 199 LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGN-LPLSVIANLTSLEYLSLF 257
L +L+ L ++ N+F L + L L VL L+ L G L + LTSLE L L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 258 DNHFQESFPLSVLANHSRLEVFQLSRLQVET 288
DN+ ++ P S N R V L+ +V++
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLS 232
NL LEVLDLS N I +L Q L NL EL ++ N+ + LT L+ + L
Sbjct: 345 NLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403
Query: 233 SNKLSGNLP 241
+N + P
Sbjct: 404 TNPWDCSCP 412
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIM-------------QGICDLKN 201
FL GN ++ K L NL+NL L L N++ + GI D+
Sbjct: 74 FLNGNKLTDI----KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129
Query: 202 LVELNINENEFDG----LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
LV L E+ + G LS LT L L L N++S +PL A LT L+ L L
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---AGLTKLQNLYLS 186
Query: 258 DNHFQESFPLSVLANHSRLEVF 279
NH + L+ L N LE+F
Sbjct: 187 KNHISDLRALAGLKNLDVLELF 208
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIM-------------QGICDLKN 201
FL GN ++ K L NL+NL L L N+I + GI D+
Sbjct: 92 FLNGNKLTDI----KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING 147
Query: 202 LVELNINENEFDG----LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
LV L E+ + G LS LT L L L N++S +PL A LT L+ L L
Sbjct: 148 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---AGLTKLQNLYLS 204
Query: 258 DNHFQESFPLSVLANHSRLEVF 279
NH + L+ L N LE+F
Sbjct: 205 KNHISDLRALAGLKNLDVLELF 226
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIM-------------QGICDLKN 201
FL GN ++ K L NL+NL L L N+I + GI D+
Sbjct: 92 FLNGNKLTDI----KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING 147
Query: 202 LVELNINENEFDG----LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
LV L E+ + G LS LT L L L N++S +PL A LT L+ L L
Sbjct: 148 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---AGLTKLQNLYLS 204
Query: 258 DNHFQESFPLSVLANHSRLEVF 279
NH + L+ L N LE+F
Sbjct: 205 KNHISDLRALAGLKNLDVLELF 226
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIM-------------QGICDLKN 201
FL GN ++ K L NL+NL L L N+I + GI D+
Sbjct: 92 FLNGNKLTDI----KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING 147
Query: 202 LVELNINENEFDG----LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
LV L E+ + G LS LT L L L N++S +PL A LT L+ L L
Sbjct: 148 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---AGLTKLQNLYLS 204
Query: 258 DNHFQESFPLSVLANHSRLEVF 279
NH + L+ L N LE+F
Sbjct: 205 KNHISDLRALAGLKNLDVLELF 226
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 176 NLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSN 234
N ++L L N+IT + G+ D L NL EL + N+ L +LT L VLDL +N
Sbjct: 41 NAQILYLHDNQITK--LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98
Query: 235 KLSGNLPLSVIANLTSLEYLSLFDNHFQE 263
+L+ LP +V L L+ L + N E
Sbjct: 99 QLT-VLPSAVFDRLVHLKELFMCCNKLTE 126
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 173 NLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDL 231
+L L+ L L GN++ + G+ D L L EL +N N+ + LT L+ L L
Sbjct: 105 HLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 232 SSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETEN 290
S+N+L ++P L L+ ++LF N F + SR E LS+ E N
Sbjct: 163 STNQLQ-SVPHGAFDRLGKLQTITLFGNQF----------DCSRCETLYLSQWIRENSN 210
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIM-------------QGICDLKN 201
FL GN ++ K L NL+NL L L N+I + GI D+
Sbjct: 69 FLNGNKLTDI----KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING 124
Query: 202 LVELNINENEFDG----LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
LV L E+ + G LS LT L L L N++S +PL A LT L+ L L
Sbjct: 125 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---AGLTKLQNLYLS 181
Query: 258 DNHFQESFPLSVLANHSRLEVF 279
NH + L+ L N LE+F
Sbjct: 182 KNHISDLRALAGLKNLDVLELF 203
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIM-------------QGICDLKN 201
FL GN ++ K L NL+NL L L N++ + GI D+
Sbjct: 69 FLNGNKLTDI----KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 124
Query: 202 LVELNINENEFDG----LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
LV L E+ + G LS LT L L L N++S +PL A LT L+ L L
Sbjct: 125 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---ACLTKLQNLYLS 181
Query: 258 DNHFQESFPLSVLANHSRLEVF 279
NH + L L N LE+F
Sbjct: 182 KNHISDLRALCGLKNLDVLELF 203
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 170 GLVN-LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV 228
G+ N L +LEVL ++GN + + +L+NL L++++ + + L P ++L+ L+V
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 229 LDLSSNKLSG--NLPLSVIANLTSLEY 253
L++S N P + +L L+Y
Sbjct: 523 LNMSHNNFFSLDTFPYKCLNSLQVLDY 549
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 687 VEVKFMAKNRY-ESYKGDV---LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLS-NNF 741
+EV MA N + E++ D+ L+ +T LDLS +L P+ L + LN+S NNF
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 742 LS-GSIPRSFSNLKMTESMDLSYNKLNGQIPPELGEL-SFLAIFNVSYNNLSGTVPNKG 798
S + P + L + +D S N + EL S LA N++ N+ + T ++
Sbjct: 531 FSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 587
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 61/145 (42%), Gaps = 32/145 (22%)
Query: 93 FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXX 152
F F EL VLDLS + E+ AY +SL L L + N
Sbjct: 72 FFSFPELQVLDLSRCEIQTIEDG-AY---QSLSHLSTLILTGNPIQS------------- 114
Query: 153 XXFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
L +FS GL +L+ L ++ + SL I LK L ELN+ N
Sbjct: 115 ---LALGAFS-------GLSSLQKLVAVETN----LASLENFPIGHLKTLKELNVAHNLI 160
Query: 213 DGL-LPQCLSNLTYLRVLDLSSNKL 236
LP+ SNLT L LDLSSNK+
Sbjct: 161 QSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 726 IGYLGEIHALNLSNNFL-SGSIPRSFSNLKMTESMDLSYNKL 766
IG+L + LN+++N + S +P FSNL E +DLS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 112/445 (25%), Positives = 174/445 (39%), Gaps = 53/445 (11%)
Query: 163 EGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVEL-------NINENEFDGL 215
+ FK + NL NLE LDLS N+I DL+ L ++ +++ N + +
Sbjct: 161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQMPLLNLSLDLSLNPMNFI 216
Query: 216 LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275
P + L L L +N S N+ + I L LE L F+ N
Sbjct: 217 QPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR---------NEGN 266
Query: 276 LEVFQLSRLQ------VETENFPWLPKFQLKVLNLRHC--NISG------TIPRFLQYQY 321
LE F S L+ +E +L + +++L +C N+S TI R + Y
Sbjct: 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSY 326
Query: 322 DFRYIDLSDNNL-VDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNN- 379
+F + L N FPT L++ +L F + GN +L L +S N
Sbjct: 327 NFGWQHLELVNCKFGQFPTLKLKSLKRLT----FTSNKGGNAFSEVDLPSLEFLDLSRNG 382
Query: 380 -SFIGKLPE-NFGLILPELVYLDMSQNSFEGSIPPSMGYM--ERXXXXXXXXXXXXRDLP 435
SF G + +FG I L YLD+S F G I S ++ E+ +
Sbjct: 383 LSFKGCCSQSDFGTI--SLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437
Query: 436 KHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNA-SSLY 494
S +L ++++SH + + L+ L L + N F + +L
Sbjct: 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497
Query: 495 VLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGP 554
LD+S L P S+L VL MS N+F + L ++LD S N +
Sbjct: 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557
Query: 555 LEFSSNH--SSLRYLFPHNNSLSGT 577
+ H SSL +L N + T
Sbjct: 558 KKQELQHFPSSLAFLNLTQNDFACT 582
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLS 232
L L VLD+S NR+T SL + + L L EL + NE L P L+ L L L+
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 233 SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANH 273
+N+L+ LP ++ L +L+ L L +N + P +H
Sbjct: 157 NNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 702 GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
G L +T LD+S N LT + LGE+ L L N L P + E + L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 762 SYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN--FDESNYRGNPYLC 815
+ N+L L L L + N+L T+P KG F + + GNP+LC
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFFGSHLLPFAFLHGNPWLC 209
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 170 GLVN-LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV 228
G+ N L +LEVL ++GN + + +L+NL L++++ + + L P ++L+ L+V
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 229 LDLSSNKLSG--NLPLSVIANLTSLEY 253
L++S N P + +L L+Y
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDY 525
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 687 VEVKFMAKNRY-ESYKGDV---LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLS-NNF 741
+EV MA N + E++ D+ L+ +T LDLS +L P+ L + LN+S NNF
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 742 LS-GSIPRSFSNLKMTESMDLSYNKLNGQIPPELGEL-SFLAIFNVSYNNLSGTVPNKG 798
S + P + L + +D S N + EL S LA N++ N+ + T ++
Sbjct: 507 FSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 61/145 (42%), Gaps = 32/145 (22%)
Query: 93 FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXX 152
F F EL VLDLS + E+ AY +SL L L + N
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDG-AY---QSLSHLSTLILTGNPIQS------------- 90
Query: 153 XXFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
L +FS GL +L+ L ++ + SL I LK L ELN+ N
Sbjct: 91 ---LALGAFS-------GLSSLQKLVAVETN----LASLENFPIGHLKTLKELNVAHNLI 136
Query: 213 DGL-LPQCLSNLTYLRVLDLSSNKL 236
LP+ SNLT L LDLSSNK+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 726 IGYLGEIHALNLSNNFL-SGSIPRSFSNLKMTESMDLSYNKL 766
IG+L + LN+++N + S +P FSNL E +DLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLS 232
L L VLD+S NR+T SL + + L L EL + NE L P L+ L L L+
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 233 SNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANH 273
+N+L+ LP ++ L +L+ L L +N + P +H
Sbjct: 157 NNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 702 GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
G L +T LD+S N LT + LGE+ L L N L P + E + L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 762 SYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN--FDESNYRGNPYLC 815
+ N+L L L L + N+L T+P KG F + + GNP+LC
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFFGSHLLPFAFLHGNPWLC 209
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 170 GLVN-LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV 228
G+ N L +LEVL ++GN + + +L+NL L++++ + + L P ++L+ L+V
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 229 LDLSSNKLSG--NLPLSVIANLTSLEY 253
L++S N P + +L L+Y
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDY 230
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 687 VEVKFMAKNRY-ESYKGDV---LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLS-NNF 741
+EV MA N + E++ D+ L+ +T LDLS +L P+ L + LN+S NNF
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 742 LS-GSIPRSFSNLKMTESMDLSYNKLNGQIPPELGEL-SFLAIFNVSYNNLSGTVPNKG 798
S + P + L + +D S N + EL S LA N++ N+ + T ++
Sbjct: 212 FSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 268
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLS 232
L L VLD+S NR+T SL + + L L EL + NE L P L+ L L L+
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 233 SNKLSGNLPLSVIANLTSLEYLSLFDN 259
+N+L+ LP ++ L +L+ L L +N
Sbjct: 157 NNQLT-ELPAGLLNGLENLDTLLLQEN 182
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 702 GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
G L +T LD+S N LT + LGE+ L L N L P + E + L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 762 SYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN--FDESNYRGNPYLC 815
+ N+L L L L + N+L T+P KG F + + GNP+LC
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFFGSHLLPFAFLHGNPWLC 209
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLS 232
L L VLD+S NR+T SL + + L L EL + NE L P L+ L L L+
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 233 SNKLSGNLPLSVIANLTSLEYLSLFDN 259
+N+L+ LP ++ L +L+ L L +N
Sbjct: 157 NNQLT-ELPAGLLNGLENLDTLLLQEN 182
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 702 GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
G L +T LD+S N LT + LGE+ L L N L P + E + L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 762 SYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN--FDESNYRGNPYLC 815
+ N+L L L L + N+L T+P KG F + + GNP+LC
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFFGSHLLPFAFLHGNPWLC 209
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 155 FLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQ-------------GICDLKN 201
FL GN ++ K L NL+NL L L N++ ++ GI D+
Sbjct: 72 FLNGNKLTDI----KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 127
Query: 202 LVELNINENEFDG----LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
LV L E+ + G LS LT L L L N++ +PL A LT L+ L L
Sbjct: 128 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPL---ARLTKLQNLYLS 184
Query: 258 DNHFQESFPLSVLANHSRLEVF 279
NH + L L N LE+F
Sbjct: 185 KNHISDLRALRGLKNLDVLELF 206
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES 264
L + +N+ L P LT L LDL +N+L+ LP V LT L LSL DN + S
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-S 100
Query: 265 FPLSVLANHSRL 276
P N L
Sbjct: 101 IPRGAFDNLKSL 112
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 703 DVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPR-SFSNLK 754
D L +T LDL +N+LT L ++ L+L++N L SIPR +F NLK
Sbjct: 59 DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLK 110
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 61/145 (42%), Gaps = 32/145 (22%)
Query: 93 FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXX 152
F F EL VLDLS + E+ AY +SL L L + N
Sbjct: 50 FFSFPELQVLDLSRCEIQTIEDG-AY---QSLSHLSTLILTGNPIQS------------- 92
Query: 153 XXFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
L +FS GL +L+ L L+ + SL I LK L ELN+ N
Sbjct: 93 ---LALGAFS-------GLSSLQKLVALETN----LASLENFPIGHLKTLKELNVAHNLI 138
Query: 213 DGL-LPQCLSNLTYLRVLDLSSNKL 236
LP+ SNLT L LDLSSNK+
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 726 IGYLGEIHALNLSNNFL-SGSIPRSFSNLKMTESMDLSYNKLN 767
IG+L + LN+++N + S +P FSNL E +DLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 13/88 (14%)
Query: 172 VNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDL 231
++L NL++ ++S N I L L +N N L P + NL+ LRVLDL
Sbjct: 229 LDLSNLQIFNISAN----------IFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDL 277
Query: 232 SSNKLSGNLPLSVIANLTSLEYLSLFDN 259
S N+L+ +LP + + + L+Y FDN
Sbjct: 278 SHNRLT-SLP-AELGSCFQLKYFYFFDN 303
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 124 LKQLKILNIGYNSFNESLVPXXXXXXXXXXXFLQGNSFSEGFKHNKGLVNLRNLEVLDLS 183
L L+I NI N F + +L GNS +E K L NLR VLDLS
Sbjct: 231 LSNLQIFNISANIFKYDFL---------TRLYLNGNSLTELPAEIKNLSNLR---VLDLS 278
Query: 184 GNRITGSLIMQGIC 197
NR+T G C
Sbjct: 279 HNRLTSLPAELGSC 292
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 178 EVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKL 236
+VL L N+IT + G+ D L L LN+ N+ L LT L L L N+L
Sbjct: 43 QVLHLYINQITK--LEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
Query: 237 SGNLPLSVIANLTSLEYLSLFDN 259
++P+ V NL SL ++ LF+N
Sbjct: 101 K-SIPMGVFDNLKSLTHIYLFNN 122
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 182 LSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNL 240
L+ N+IT + G+ D L NL +L N N+ + LT L LDL+ N L ++
Sbjct: 40 LNNNQITK--LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SI 96
Query: 241 PLSVIANLTSLEYLSLFDN 259
P NL SL ++ L++N
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767
+T L L N+ T +P E+ + ++LSNN +S +SFSN+ ++ LSYN+L
Sbjct: 33 VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 768 GQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNY---RGNPYLC 815
P L L + ++ N++S VP +G F + ++ NP C
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDIS-VVP-EGAFNDLSALSHLAIGANPLYC 140
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 168 NKGLVNL-----RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSN 222
NKGL L R++ L L GN+ T L+ + + + K+L ++++ N L Q SN
Sbjct: 19 NKGLKVLPKGIPRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76
Query: 223 LTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDN 259
+T L L LS N+L +P L SL LSL N
Sbjct: 77 MTQLLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGN 112
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 199 LKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGN-LPLSVIANLTSLEYLSLF 257
L +L+ L ++ N+F L + L L VL L+ L G L + LTSLE L L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 258 DNHFQESFPLSVLANHSRLEVFQLSRLQVET 288
DN+ ++ P S N R V L+ +V++
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 24/172 (13%)
Query: 111 GWEE--NKAYNTSRSLKQLKILNIGYNSFNESLVPX--XXXXXXXXXXFLQGNSFSEG-- 164
GWE+ N NTS + L++ N F ES+ + NS++ G
Sbjct: 201 GWEKCGNPFKNTS-----ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255
Query: 165 FKHN----------KGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDG 214
F H KGL ++ DLS ++I +L+ +L +L + +NE +
Sbjct: 256 FGHTNFKDPDNFTFKGL-EASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINK 313
Query: 215 LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
+ LT+L+ L L +N+L ++P + LTSL+ + L N + S P
Sbjct: 314 IDDNAFWGLTHLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 30/119 (25%)
Query: 170 GLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEF----DGLLPQCLSNLT 224
L L NL L L+GN++ + G+ D L NL EL + EN+ DG+ + L+NLT
Sbjct: 80 ALKELTNLTYLILTGNQLQS--LPNGVFDKLTNLKELVLVENQLQSLPDGVFDK-LTNLT 136
Query: 225 YLRV---------------------LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQ 262
YL + LDL +N+L +LP V LT L+ LSL DN +
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLK 194
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES 264
L + +N L P LT L LDL +N+L+ LP V LT L LSL DN + S
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-S 92
Query: 265 FPLSVLAN 272
P N
Sbjct: 93 IPRGAFDN 100
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 61/145 (42%), Gaps = 32/145 (22%)
Query: 93 FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXX 152
F F EL VLDLS + E+ AY +SL L L + N
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDG-AY---QSLSHLSTLILTGNPIQS------------- 90
Query: 153 XXFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
L +FS GL +L+ L ++ + SL I LK L ELN+ N
Sbjct: 91 ---LALGAFS-------GLSSLQKLVAVETN----LASLENFPIGHLKTLKELNVAHNLI 136
Query: 213 DGL-LPQCLSNLTYLRVLDLSSNKL 236
LP+ SNLT L LDLSSNK+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 726 IGYLGEIHALNLSNNFL-SGSIPRSFSNLKMTESMDLSYNKLNG 768
IG+L + LN+++N + S +P FSNL E +DLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 61/145 (42%), Gaps = 32/145 (22%)
Query: 93 FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXX 152
F F EL VLDLS + E+ AY +SL L L + N
Sbjct: 49 FFSFPELQVLDLSRCEIQTIEDG-AY---QSLSHLSTLILTGNPIQS------------- 91
Query: 153 XXFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
L +FS GL +L+ L ++ + SL I LK L ELN+ N
Sbjct: 92 ---LALGAFS-------GLSSLQKLVAVETN----LASLENFPIGHLKTLKELNVAHNLI 137
Query: 213 DGL-LPQCLSNLTYLRVLDLSSNKL 236
LP+ SNLT L LDLSSNK+
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 726 IGYLGEIHALNLSNNFL-SGSIPRSFSNLKMTESMDLSYNKLN 767
IG+L + LN+++N + S +P FSNL E +DLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 61/145 (42%), Gaps = 32/145 (22%)
Query: 93 FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXX 152
F F EL VLDLS + E+ AY +SL L L + N
Sbjct: 50 FFSFPELQVLDLSRCEIQTIEDG-AY---QSLSHLSTLILTGNPIQS------------- 92
Query: 153 XXFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
L +FS GL +L+ L ++ + SL I LK L ELN+ N
Sbjct: 93 ---LALGAFS-------GLSSLQKLVAVETN----LASLENFPIGHLKTLKELNVAHNLI 138
Query: 213 DGL-LPQCLSNLTYLRVLDLSSNKL 236
LP+ SNLT L LDLSSNK+
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 726 IGYLGEIHALNLSNNFL-SGSIPRSFSNLKMTESMDLSYNKLN 767
IG+L + LN+++N + S +P FSNL E +DLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 61/145 (42%), Gaps = 32/145 (22%)
Query: 93 FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPXXXXXXXXX 152
F F EL VLDLS + E+ AY +SL L L + N
Sbjct: 49 FFSFPELQVLDLSRCEIQTIEDG-AY---QSLSHLSTLILTGNPIQS------------- 91
Query: 153 XXFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF 212
L +FS GL +L+ L ++ + SL I LK L ELN+ N
Sbjct: 92 ---LALGAFS-------GLSSLQKLVAVETN----LASLENFPIGHLKTLKELNVAHNLI 137
Query: 213 DGL-LPQCLSNLTYLRVLDLSSNKL 236
LP+ SNLT L LDLSSNK+
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 726 IGYLGEIHALNLSNNFL-SGSIPRSFSNLKMTESMDLSYNKLN 767
IG+L + LN+++N + S +P FSNL E +DLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 198 DLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLF 257
+LKNL L + +N+ L L L L L N+L +LP V +LT L YLSL
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLG 141
Query: 258 DNHFQESFPLSVLANHSRLEVFQL 281
N Q S P V + L+ +L
Sbjct: 142 YNELQ-SLPKGVFDKLTSLKELRL 164
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN--- 764
+ LDLS+N +T S++ + AL L++N ++ SFS+L E +DLSYN
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 765 KLNGQIPPELGELSFLAIFNVSYNNLSGT-------------VPNKGQFANFDESNYRGN 811
L+ L L+FL + Y L T V N F ++ G
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 147
Query: 812 PYL 814
+L
Sbjct: 148 TFL 150
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN--- 764
+ LDLS+N +T S++ + AL L++N ++ SFS+L E +DLSYN
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 765 KLNGQIPPELGELSFLAIFNVSYNNLSGT-------------VPNKGQFANFDESNYRGN 811
L+ L L+FL + Y L T V N F ++ G
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 812 PYL 814
+L
Sbjct: 174 TFL 176
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 32.7 bits (73), Expect = 0.90, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLD 230
L + NL +L L N I + + D L EL I+ N+ L + L LRVL
Sbjct: 66 LSGMENLRILSLGRNLIKKIENLDAVAD--TLEELWISYNQIASL--SGIEKLVNLRVLY 121
Query: 231 LSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQ 280
+S+NK++ + +A L LE L L N + + + R+EV +
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 32.7 bits (73), Expect = 0.91, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLD 230
L + NL +L L N I + + D L EL I+ N+ L + L LRVL
Sbjct: 67 LSGMENLRILSLGRNLIKKIENLDAVAD--TLEELWISYNQIASL--SGIEKLVNLRVLY 122
Query: 231 LSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQ 280
+S+NK++ + +A L LE L L N + + + R+EV +
Sbjct: 123 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 172
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 732 IHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS 791
+ L+LS+ F+ R F LK + ++L+YNK+N L L + N+SYN L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL- 326
Query: 792 GTVPNKGQFANFDESNYRGNPYLCGPAVRKN 822
SN+ G P + ++KN
Sbjct: 327 ---------GELYSSNFYGLPKVAYIDLQKN 348
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 27/115 (23%)
Query: 123 SLKQLKILNIGYNSFNESLVPXXXXXXXXXXXFLQGNSFSEGFKHNKGLVNLRNLEVLDL 182
+LK LK+LN+ YN N+ ++ L NL+VL+L
Sbjct: 288 TLKDLKVLNLAYNKINK--------------------------IADEAFYGLDNLQVLNL 321
Query: 183 SGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237
S N + G L L + +++ +N + Q L L+ LDL N L+
Sbjct: 322 SYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 507 LPRWIGKFSN--LDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSL 564
L W G SN V+L +R S++ ++ SN+ +A + ++ L+ F++
Sbjct: 287 LEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHSSFAAQGQIS 346
Query: 565 RYLFPHNNSLSGTIPN 580
+ PH+ + PN
Sbjct: 347 ASVAPHDCKMYVLTPN 362
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 205 LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES 264
L + +N+ L P LT L LDL +N+L+ LP V LT L LSL DN +S
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL-KS 92
Query: 265 FPLSVLAN 272
P N
Sbjct: 93 IPRGAFDN 100
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLD 230
L ++RNL L+L N + DL+NL + N+ + + L+ L+
Sbjct: 143 LTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLN 200
Query: 231 LSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
L+SN+L ++P + LTSL+ + L N + S P
Sbjct: 201 LASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 173 NLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEFDGLLPQCLSNLTYLRVLDL 231
L L L LS N+I + G+ D L L L ++EN+ L LT L+ L L
Sbjct: 50 KLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107
Query: 232 SSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFP 266
+N+L ++P + LTSL+ + L N + S P
Sbjct: 108 DTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 196 ICDLKNLV---ELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLE 252
+C L+ L+ L+++ N L P L+ L L VL S N L + +ANL L+
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN---VDGVANLPRLQ 511
Query: 253 YLSLFDNHFQESFPLSVLANHSRLEVFQL 281
L L +N Q+S + L + RL + L
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 196 ICDLKNLV---ELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLE 252
+C L+ L+ L+++ N L P L+ L L VL S N L + +ANL L+
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN---VDGVANLPRLQ 511
Query: 253 YLSLFDNHFQESFPLSVLANHSRLEVFQL 281
L L +N Q+S + L + RL + L
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 67/174 (38%), Gaps = 23/174 (13%)
Query: 495 VLDVSNNMLSGQLPRWI-GKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG 553
+LD+S+N LS W + +NL LL+S N S + R LD+S N L+
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 554 PLEF-SSNHSSLRYLFPHNNSLSGTIPNAXXXXXXXXXXDLRDNEFSGNIAHLINEDSXX 612
EF S+ +L L +NN + NA L N+ S LI + +
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK- 161
Query: 613 XXXXXXXXXXXXXIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNY 666
L KL ++D+S N L + + W++ G Y
Sbjct: 162 --------------------LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 179 VLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG 238
+LDLS N ++ L NL L ++ N + + + + LR LDLSSN L
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH- 101
Query: 239 NLPLSVIANLTSLEYLSLFDNHF 261
L + ++L +LE L L++NH
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHI 124
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 692 MAKNRYESYK--GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRS 749
++ N+ +S G L +T LD+S N LT + LGE+ L L N L P
Sbjct: 85 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 144
Query: 750 FSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN--FDESN 807
+ E + L+ N L L L L + N+L T+P KG F + +
Sbjct: 145 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFFGSHLLPFAF 202
Query: 808 YRGNPYLC 815
GNP+LC
Sbjct: 203 LHGNPWLC 210
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 702 GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
G L +T LD+S N LT + LGE+ L L N L P + E + L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 762 SYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN--FDESNYRGNPYLC 815
+ N L L L L + N+L T+P KG F + + GNP+LC
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFFGSHLLPFAFLHGNPWLC 209
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 726 IGYLGEIHALNLSNNFL-SGSIPRSFSNLKMTESMDLSYN 764
IG L + LN+++NF+ S +P FSNL +DLSYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 702 GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
G L +T LD+S N LT + LGE+ L L N L P + E + L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 762 SYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN--FDESNYRGNPYLC 815
+ N L L L L + N+L T+P KG F + + GNP+LC
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFFGSHLLPFAFLHGNPWLC 209
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 726 IGYLGEIHALNLSNNFL-SGSIPRSFSNLKMTESMDLSYN 764
IG L + LN+++NF+ S +P FSNL +DLSYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 176 NLEVLDLSGNRITGSLIMQG-ICDLKNLVELNINEN------EFDGLLPQCLSNLTYLRV 228
+L LDLS N G++IM L+ L L+ + EF L L L YL +
Sbjct: 377 SLRHLDLSFN---GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS--LEKLLYLDI 431
Query: 229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVET 288
++ K+ + + LTSL L + N F+++ +V AN + L LS+ Q+E
Sbjct: 432 -SYTNTKIDFD---GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487
Query: 289 ENFPWLPKF-QLKVLNLRHCNI 309
++ +L++LN+ H N+
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNL 509
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 702 GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
G L +T LD+S N LT + LGE+ L L N L P + E + L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 762 SYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN--FDESNYRGNPYLC 815
+ N L L L L + N+L T+P KG F + + GNP+LC
Sbjct: 156 ANNDLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFFGSHLLPFAFLHGNPWLC 209
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 702 GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
G L +T LD+S N LT + LGE+ L L N L P + E + L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 762 SYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN--FDESNYRGNPYLC 815
+ N L L L L + N+L T+P KG F + + GNP+LC
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFFGSHLLPFAFLHGNPWLC 209
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 702 GDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDL 761
G L +T LD+S N LT + LGE+ L L N L P + E + L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 762 SYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN--FDESNYRGNPYLC 815
+ N L L L L + N+L T+P KG F + + GNP+LC
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFFGSHLLPFAFLHGNPWLC 209
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 703 DVLKYMTGLDLSSNELTGDIPSE--IGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMD 760
D+ + T L L+ NEL G I S+ G L + L L N L+G P +F + +
Sbjct: 26 DIPLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84
Query: 761 LSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDES-NYRGNPYLC 815
L NK+ L L N+ N +S +P + N S N NP+ C
Sbjct: 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 27/159 (16%)
Query: 196 ICDLKNLVE-----------LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSV 244
IC + L E LN+ EN + +L +L +L LS N L + +
Sbjct: 20 ICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGA 78
Query: 245 IANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQL-KVLN 303
L SL L LFDN + P S+L L +E+ +P + +V +
Sbjct: 79 FNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIES-----IPSYAFNRVPS 132
Query: 304 LRHCNISGTIPRF-------LQYQYDFRYIDLSDNNLVD 335
LR ++ G + R + + RY++L NL D
Sbjct: 133 LRRLDL-GELKRLEYISEAAFEGLVNLRYLNLGMCNLKD 170
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 711 LDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN--- 767
LDL +N++T + L +H L L NN +S P +F+ L E + LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 768 GQIPPELGEL 777
++P L EL
Sbjct: 117 EKMPKTLQEL 126
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768
T LDL +N+++ + L ++AL L NN +S ++FS L+ + + +S N L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV- 115
Query: 769 QIPPEL 774
+IPP L
Sbjct: 116 EIPPNL 121
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 711 LDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN--- 767
LDL +N++T + L +H L L NN +S P +F+ L E + LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 768 GQIPPELGEL 777
++P L EL
Sbjct: 117 EKMPKTLQEL 126
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 29/160 (18%)
Query: 196 ICDLKNLVE-----------LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSV 244
IC + L E LN+ EN + +L +L +L LS N L + +
Sbjct: 20 ICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGA 78
Query: 245 IANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQL-KVLN 303
L SL L LFDN + P S+L L +E+ +P + +V +
Sbjct: 79 FNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIES-----IPSYAFNRVPS 132
Query: 304 LRHCNISGTIPRFLQY--------QYDFRYIDLSDNNLVD 335
LR ++ G + R L+Y + RY++L NL D
Sbjct: 133 LRRLDL-GELKR-LEYISEAAFEGLVNLRYLNLGMCNLKD 170
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 27/157 (17%)
Query: 196 ICDLKNLVE-----------LNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSV 244
IC KNL E LN++EN+ + +L +L +L LS N + + +
Sbjct: 49 ICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGA 107
Query: 245 IANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQL-KVLN 303
L +L L LFDN L+ + N + + + +L L + +P + ++ +
Sbjct: 108 FNGLANLNTLELFDNR------LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 304 LRHCNISGTIPRF-------LQYQYDFRYIDLSDNNL 333
LR ++ G + R + + RY++L+ NL
Sbjct: 162 LRRLDL-GELKRLSYISEGAFEGLSNLRYLNLAMCNL 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,425,536
Number of Sequences: 62578
Number of extensions: 948004
Number of successful extensions: 2687
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1698
Number of HSP's gapped (non-prelim): 535
length of query: 844
length of database: 14,973,337
effective HSP length: 107
effective length of query: 737
effective length of database: 8,277,491
effective search space: 6100510867
effective search space used: 6100510867
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)