Query 038149
Match_columns 844
No_of_seqs 824 out of 4995
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:05:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.9E-71 8.4E-76 681.3 45.6 584 12-818 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.2E-58 4.7E-63 568.2 39.4 515 201-816 70-586 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 3.5E-42 7.5E-47 342.0 -17.4 479 171-791 41-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 3.4E-37 7.4E-42 319.7 8.6 366 128-526 81-450 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.2E-39 2.5E-44 324.1 -10.4 450 274-814 45-541 (565)
6 KOG4194 Membrane glycoprotein 100.0 7.3E-37 1.6E-41 317.3 7.4 362 179-619 82-448 (873)
7 KOG0618 Serine/threonine phosp 100.0 3E-36 6.5E-41 329.6 -5.0 419 127-647 23-443 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.2E-35 4.7E-40 322.9 -3.7 482 204-789 2-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.3E-34 9.3E-39 298.3 -3.0 368 369-795 7-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 6E-34 1.3E-38 297.2 -3.3 369 393-818 6-379 (1255)
11 PLN03210 Resistant to P. syrin 99.9 7.8E-23 1.7E-27 252.3 26.2 57 707-764 847-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.6E-22 3.4E-27 249.6 27.1 335 392-789 556-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 6.4E-26 1.4E-30 226.4 -2.3 276 370-647 68-359 (498)
14 KOG4237 Extracellular matrix p 99.9 8E-25 1.7E-29 218.6 -4.1 394 384-788 60-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 6E-22 1.3E-26 226.0 16.6 74 395-480 202-275 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 2.2E-21 4.8E-26 221.4 17.7 265 371-776 203-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 8.6E-20 1.9E-24 210.1 13.3 119 394-528 178-296 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.4E-19 3.1E-24 208.3 12.8 182 443-647 178-359 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.1E-19 8.9E-24 191.0 2.6 67 581-647 160-234 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.8E-19 6E-24 192.3 0.8 280 447-790 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 7.1E-20 1.5E-24 162.4 -4.2 187 555-795 26-216 (264)
22 KOG0617 Ras suppressor protein 99.7 6.7E-19 1.4E-23 156.3 -3.9 181 582-815 29-213 (264)
23 PLN03150 hypothetical protein; 99.5 7.4E-14 1.6E-18 161.1 8.7 119 707-825 419-539 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 6.9E-15 1.5E-19 154.6 -3.3 188 564-808 77-267 (722)
25 PLN03150 hypothetical protein; 99.4 1.6E-12 3.5E-17 150.1 13.8 152 9-212 367-527 (623)
26 COG4886 Leucine-rich repeat (L 99.3 4.3E-12 9.4E-17 140.4 8.9 122 519-644 97-219 (394)
27 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.9E-18 145.0 -5.3 155 494-656 78-232 (722)
28 COG4886 Leucine-rich repeat (L 99.2 2.3E-11 5.1E-16 134.5 8.1 101 544-647 98-199 (394)
29 KOG1259 Nischarin, modulator o 99.1 1.2E-11 2.6E-16 120.3 1.2 88 705-795 328-416 (490)
30 PF14580 LRR_9: Leucine-rich r 99.0 1.3E-10 2.8E-15 109.6 4.4 126 149-282 19-148 (175)
31 PF14580 LRR_9: Leucine-rich r 99.0 1.5E-10 3.2E-15 109.1 3.3 127 124-258 18-149 (175)
32 KOG3207 Beta-tubulin folding c 99.0 6E-11 1.3E-15 121.8 0.5 234 101-335 97-340 (505)
33 KOG1909 Ran GTPase-activating 99.0 2.3E-11 4.9E-16 121.5 -2.6 92 63-161 30-132 (382)
34 KOG1909 Ran GTPase-activating 99.0 4.5E-11 9.7E-16 119.5 -0.5 187 441-646 90-310 (382)
35 KOG3207 Beta-tubulin folding c 99.0 1.6E-10 3.4E-15 118.8 2.7 211 299-528 123-339 (505)
36 KOG1259 Nischarin, modulator o 99.0 9.2E-11 2E-15 114.2 -0.4 203 93-312 210-414 (490)
37 PF08263 LRRNT_2: Leucine rich 99.0 6.6E-10 1.4E-14 78.4 4.0 43 12-59 1-43 (43)
38 KOG0531 Protein phosphatase 1, 98.8 6.3E-10 1.4E-14 123.2 -0.9 85 708-795 234-322 (414)
39 KOG4658 Apoptotic ATPase [Sign 98.8 4.3E-09 9.4E-14 124.2 5.9 130 96-235 522-653 (889)
40 PF13855 LRR_8: Leucine rich r 98.8 5.9E-09 1.3E-13 80.6 3.8 59 731-789 2-60 (61)
41 PF13855 LRR_8: Leucine rich r 98.7 7.3E-09 1.6E-13 80.1 3.7 61 706-766 1-61 (61)
42 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.4E-14 120.1 -2.3 245 95-385 70-321 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.6 7.4E-08 1.6E-12 113.9 6.8 273 346-625 523-809 (889)
44 KOG1859 Leucine-rich repeat pr 98.4 4.4E-09 9.6E-14 114.4 -7.8 22 90-111 102-123 (1096)
45 KOG4579 Leucine-rich repeat (L 98.4 1.6E-08 3.4E-13 87.5 -3.6 64 707-773 78-141 (177)
46 KOG2120 SCF ubiquitin ligase, 98.3 1.3E-08 2.7E-13 99.7 -6.9 88 98-188 186-273 (419)
47 KOG2120 SCF ubiquitin ligase, 98.3 4.2E-08 9E-13 96.1 -3.8 131 299-429 212-349 (419)
48 KOG1859 Leucine-rich repeat pr 98.3 1.7E-08 3.8E-13 109.9 -7.3 128 394-528 164-292 (1096)
49 KOG2982 Uncharacterized conser 98.2 2.3E-07 5.1E-12 90.9 0.1 112 150-261 46-158 (418)
50 KOG4579 Leucine-rich repeat (L 98.1 2.4E-07 5.1E-12 80.4 -2.1 89 564-655 29-120 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.1 6.3E-07 1.4E-11 86.8 -0.4 92 96-187 29-132 (388)
52 KOG2982 Uncharacterized conser 98.0 2.8E-06 6.1E-11 83.5 1.8 196 441-642 69-287 (418)
53 KOG4341 F-box protein containi 97.9 5.3E-07 1.2E-11 92.8 -4.6 135 319-453 292-436 (483)
54 PRK15386 type III secretion pr 97.9 4.4E-05 9.5E-10 81.2 8.8 73 560-645 50-123 (426)
55 PF12799 LRR_4: Leucine Rich r 97.8 1.3E-05 2.7E-10 56.6 2.4 35 732-767 3-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.5E-10 55.5 2.9 36 707-743 2-37 (44)
57 KOG3665 ZYG-1-like serine/thre 97.7 1.2E-05 2.6E-10 93.0 2.2 149 125-278 122-279 (699)
58 KOG3665 ZYG-1-like serine/thre 97.7 8.6E-06 1.9E-10 94.2 0.7 37 318-354 247-283 (699)
59 COG5238 RNA1 Ran GTPase-activa 97.6 4.4E-05 9.5E-10 74.4 3.0 217 62-289 29-287 (388)
60 KOG4341 F-box protein containi 97.6 5.6E-06 1.2E-10 85.5 -3.3 38 344-381 399-438 (483)
61 PRK15386 type III secretion pr 97.5 0.00035 7.6E-09 74.5 9.3 76 535-622 48-124 (426)
62 KOG1644 U2-associated snRNP A' 97.5 0.0002 4.4E-09 67.1 5.6 105 176-283 43-149 (233)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00024 5.2E-09 64.6 6.1 103 141-252 27-129 (129)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00029 6.4E-09 64.0 6.4 86 166-257 26-111 (129)
65 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.3E-09 66.1 5.6 106 98-235 43-151 (233)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00048 1.1E-08 67.5 2.3 87 95-188 41-129 (260)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00058 1.3E-08 67.0 1.8 68 141-213 35-104 (260)
68 KOG1947 Leucine rich repeat pr 96.2 0.00059 1.3E-08 77.9 -2.6 63 393-455 242-307 (482)
69 KOG2123 Uncharacterized conser 96.0 0.00038 8.2E-09 68.3 -4.3 82 197-280 38-123 (388)
70 KOG2123 Uncharacterized conser 95.9 0.00084 1.8E-08 66.0 -2.9 85 370-459 20-104 (388)
71 PF00560 LRR_1: Leucine Rich R 95.8 0.0044 9.6E-08 36.2 1.0 18 732-750 2-19 (22)
72 KOG1947 Leucine rich repeat pr 95.7 0.0028 6E-08 72.3 0.2 135 94-232 185-329 (482)
73 PF00560 LRR_1: Leucine Rich R 95.6 0.0046 1E-07 36.2 0.6 21 755-776 1-21 (22)
74 KOG0473 Leucine-rich repeat pr 93.7 0.0047 1E-07 59.3 -4.0 84 705-791 41-124 (326)
75 KOG4308 LRR-containing protein 91.4 0.0024 5.2E-08 71.0 -10.7 190 99-288 89-304 (478)
76 KOG4308 LRR-containing protein 91.1 0.0019 4.1E-08 71.8 -12.0 113 125-237 87-217 (478)
77 PF13504 LRR_7: Leucine rich r 89.0 0.25 5.4E-06 26.7 1.3 11 226-236 3-13 (17)
78 smart00369 LRR_TYP Leucine-ric 87.8 0.55 1.2E-05 28.6 2.5 21 224-245 2-22 (26)
79 smart00370 LRR Leucine-rich re 87.8 0.55 1.2E-05 28.6 2.5 21 224-245 2-22 (26)
80 KOG0473 Leucine-rich repeat pr 87.4 0.044 9.6E-07 52.8 -3.9 61 705-767 64-124 (326)
81 smart00370 LRR Leucine-rich re 86.9 0.58 1.3E-05 28.5 2.2 14 175-188 2-15 (26)
82 smart00369 LRR_TYP Leucine-ric 86.9 0.58 1.3E-05 28.5 2.2 14 175-188 2-15 (26)
83 PF13516 LRR_6: Leucine Rich r 84.1 0.24 5.1E-06 29.6 -0.6 12 756-767 4-15 (24)
84 PF13516 LRR_6: Leucine Rich r 83.0 0.21 4.6E-06 29.7 -1.1 20 730-749 2-21 (24)
85 KOG3864 Uncharacterized conser 76.7 0.37 8.1E-06 45.9 -2.2 36 395-430 102-137 (221)
86 KOG3864 Uncharacterized conser 75.4 0.51 1.1E-05 45.0 -1.6 81 176-258 102-185 (221)
87 smart00365 LRR_SD22 Leucine-ri 74.6 2.3 5E-05 25.9 1.6 15 753-767 1-15 (26)
88 KOG4242 Predicted myosin-I-bin 69.0 18 0.00039 39.4 7.7 109 368-479 164-280 (553)
89 smart00364 LRR_BAC Leucine-ric 65.9 3.8 8.2E-05 25.0 1.2 12 732-743 4-15 (26)
90 smart00368 LRR_RI Leucine rich 55.7 6.9 0.00015 24.3 1.2 12 126-137 3-14 (28)
91 KOG3763 mRNA export factor TAP 36.5 25 0.00053 39.2 2.4 12 322-333 219-230 (585)
92 KOG3763 mRNA export factor TAP 35.1 16 0.00034 40.7 0.7 80 123-206 216-307 (585)
93 PF08093 Toxin_23: Magi 5 toxi 29.5 45 0.00097 20.8 1.7 17 38-54 3-19 (30)
94 smart00367 LRR_CC Leucine-rich 22.5 63 0.0014 19.4 1.5 11 125-135 2-12 (26)
95 TIGR00864 PCC polycystin catio 21.0 55 0.0012 44.2 2.0 33 736-768 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.9e-71 Score=681.32 Aligned_cols=584 Identities=33% Similarity=0.527 Sum_probs=396.0
Q ss_pred cHHHHHHHHHhhhcccccccccccccccCCCcCCCCCCCCCCCceEecCCCCceEEEeeCcCcccCCCCCCCCCcccCCC
Q 038149 12 LDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMS 91 (844)
Q Consensus 12 ~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~C~w~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~~~~~~~ 91 (844)
.++|++||++||+++.+ |. +.+++|+. +.+||.|.||+|+. .++|+.|+|+++.+
T Consensus 27 ~~~~~~~l~~~~~~~~~----~~--~~~~~w~~--~~~~c~w~gv~c~~-~~~v~~L~L~~~~i---------------- 81 (968)
T PLN00113 27 HAEELELLLSFKSSIND----PL--KYLSNWNS--SADVCLWQGITCNN-SSRVVSIDLSGKNI---------------- 81 (968)
T ss_pred CHHHHHHHHHHHHhCCC----Cc--ccCCCCCC--CCCCCcCcceecCC-CCcEEEEEecCCCc----------------
Confidence 57899999999999853 44 56899964 36899999999985 57899999887654
Q ss_pred CccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhc-CCCCCCEEECCCCCCCCCCcCccc
Q 038149 92 LFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLT-SLTSLTSLFLQGNSFSEGFKHNKG 170 (844)
Q Consensus 92 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~ 170 (844)
.+..+ ..+..+++|++|+|++|.+.+.+|..+. .+++|++|+|++|.+
T Consensus 82 ------------------~~~~~----~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l--------- 130 (968)
T PLN00113 82 ------------------SGKIS----SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF--------- 130 (968)
T ss_pred ------------------cccCC----hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc---------
Confidence 22222 2344555555555555555443333222 444444444444444
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCC
Q 038149 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTS 250 (844)
Q Consensus 171 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~ 250 (844)
++.+|. +.+++|++|+|++|.+++.+|..++++++|++|++++|.+.+.+| ..+.++++
T Consensus 131 -----------------~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~ 189 (968)
T PLN00113 131 -----------------TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTS 189 (968)
T ss_pred -----------------ccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCcC
Confidence 333321 234445555555555554555555555555555555555554555 44555555
Q ss_pred CCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccC
Q 038149 251 LEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSD 330 (844)
Q Consensus 251 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 330 (844)
|++|++++|.+.+.+|. .++++++ |++|++++|.+.+.+|..++.+++|++|++++
T Consensus 190 L~~L~L~~n~l~~~~p~-~l~~l~~-----------------------L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 190 LEFLTLASNQLVGQIPR-ELGQMKS-----------------------LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCeeeccCCCCcCcCCh-HHcCcCC-----------------------ccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 55555555544332221 1111111 11112222222223333444444444444444
Q ss_pred CcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCC
Q 038149 331 NNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSI 410 (844)
Q Consensus 331 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~ 410 (844)
|.+.+ .+|..+. .+++|++|++++|.+.+.+
T Consensus 246 n~l~~------------------------------------------------~~p~~l~-~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 246 NNLTG------------------------------------------------PIPSSLG-NLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred ceecc------------------------------------------------ccChhHh-CCCCCCEEECcCCeeeccC
Confidence 44433 3333333 2566777777777777777
Q ss_pred CccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCC
Q 038149 411 PPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNA 490 (844)
Q Consensus 411 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 490 (844)
|..+..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 7777777777777777777766666543 456666666666666666555555555555555555555555555555555
Q ss_pred CCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECC
Q 038149 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPH 570 (844)
Q Consensus 491 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~ 570 (844)
++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|+++
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-----------------------~~~~L~~L~L~ 412 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-----------------------ACRSLRRVRLQ 412 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh-----------------------CCCCCCEEECc
Confidence 5555555555555555555555555555555555555544444444 44555556666
Q ss_pred CCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCC
Q 038149 571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPI 650 (844)
Q Consensus 571 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 650 (844)
+|++++.+|..+..++.|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+
T Consensus 413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAV 491 (968)
T ss_pred CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCcc
Confidence 666667778888888899999999999998888888889999999999999998888766 4588999999999999999
Q ss_pred CchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhcc
Q 038149 651 PSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLG 730 (844)
Q Consensus 651 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 730 (844)
|..+.+ ++.|+.|+|++|++.|.+|..++.++
T Consensus 492 ~~~~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 492 PRKLGS------------------------------------------------LSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred Chhhhh------------------------------------------------hhccCEEECcCCcceeeCChHHcCcc
Confidence 988766 45788999999999999999999999
Q ss_pred ccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCC
Q 038149 731 EIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRG 810 (844)
Q Consensus 731 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~g 810 (844)
+|++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|..++|.++...++.|
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~ 603 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAG 603 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcc
Q 038149 811 NPYLCGPA 818 (844)
Q Consensus 811 n~~lc~~~ 818 (844)
||++||++
T Consensus 604 n~~lc~~~ 611 (968)
T PLN00113 604 NIDLCGGD 611 (968)
T ss_pred CccccCCc
Confidence 99999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-58 Score=568.24 Aligned_cols=515 Identities=30% Similarity=0.513 Sum_probs=418.5
Q ss_pred CCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEE
Q 038149 201 NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQ 280 (844)
Q Consensus 201 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 280 (844)
+++.|+|++|.+++.++..|..+++|++|++++|++.+.+|...+..+++|++|++++|.+.+.+|. +.+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l------- 139 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSI------- 139 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---ccc-------
Confidence 4556666666666656666666666666666666666666644444666666666666666655442 112
Q ss_pred ccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccc
Q 038149 281 LSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTG 360 (844)
Q Consensus 281 l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 360 (844)
.+|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+. +
T Consensus 140 ----------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~---------------- 186 (968)
T PLN00113 140 ----------------PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-N---------------- 186 (968)
T ss_pred ----------------CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-h----------------
Confidence 2345555666666666677777777777777777777766666553 2
Q ss_pred cccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhh
Q 038149 361 NLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLT 440 (844)
Q Consensus 361 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 440 (844)
+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..+ .
T Consensus 187 -------l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~ 257 (968)
T PLN00113 187 -------LTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-G 257 (968)
T ss_pred -------CcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-h
Confidence 344555555555555566666653 7778888888888877788888888888888888888877777654 6
Q ss_pred cCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEE
Q 038149 441 SCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVL 520 (844)
Q Consensus 441 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 520 (844)
.+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 77888888888888887777788888888888888888888888888888888888888888888888888888888888
Q ss_pred eCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCC
Q 038149 521 LMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS 599 (844)
Q Consensus 521 ~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 599 (844)
++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ .+++|+.|++++|++.+.+|..+..+++|+.|++++|+++
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 888888888888888888888888888888888777766 6788999999999999999999999999999999999999
Q ss_pred cccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccc
Q 038149 600 GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAED 679 (844)
Q Consensus 600 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 679 (844)
+.+|..+..++.|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..++
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------------------------ 473 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------------------------ 473 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc------------------------
Confidence 99999999999999999999999999999999999999999999999988887542
Q ss_pred ccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEE
Q 038149 680 NRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESM 759 (844)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 759 (844)
.++|+.||+++|+++|.+|..+..+++|+.|+|++|++++.+|..++++++|++|
T Consensus 474 -------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 528 (968)
T PLN00113 474 -------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528 (968)
T ss_pred -------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence 2468899999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC-CcCCCcCccccCCCCCCcC
Q 038149 760 DLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK-GQFANFDESNYRGNPYLCG 816 (844)
Q Consensus 760 ~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lc~ 816 (844)
+|++|+++|.+|..+..+++|+.|++++|+++|.+|.. ..+..+....+.+|+..+.
T Consensus 529 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586 (968)
T ss_pred ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence 99999999999999999999999999999999999976 6677788888999987763
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.5e-42 Score=342.01 Aligned_cols=479 Identities=27% Similarity=0.374 Sum_probs=310.4
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCC
Q 038149 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTS 250 (844)
Q Consensus 171 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~ 250 (844)
.+.-.-|+.|++++|.+. .+. +.+.++..|.+|++.+|.++ ..|.+++.+..++.++.++|+++ .+| ..+..+.+
T Consensus 41 wW~qv~l~~lils~N~l~-~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~ 115 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLE-VLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLIS 115 (565)
T ss_pred hhhhcchhhhhhccCchh-hcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhh
Confidence 344455667777777765 333 34667777777777777776 45667777777777777777776 677 66677777
Q ss_pred CCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccC
Q 038149 251 LEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSD 330 (844)
Q Consensus 251 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 330 (844)
|+.|+.++|.+....+ .++.+.. ++.++..+|+++ ..|..+.++.+|..+++.+
T Consensus 116 l~~l~~s~n~~~el~~--~i~~~~~-----------------------l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~ 169 (565)
T KOG0472|consen 116 LVKLDCSSNELKELPD--SIGRLLD-----------------------LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEG 169 (565)
T ss_pred hhhhhccccceeecCc--hHHHHhh-----------------------hhhhhccccccc-cCchHHHHHHHHHHhhccc
Confidence 7777777766553221 1222222 222222333333 2444444455555555555
Q ss_pred CcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCC
Q 038149 331 NNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSI 410 (844)
Q Consensus 331 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~ 410 (844)
|++....| .... +..|++||...|-++ .+
T Consensus 170 n~l~~l~~-------------------------------------------------~~i~-m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 170 NKLKALPE-------------------------------------------------NHIA-MKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cchhhCCH-------------------------------------------------HHHH-HHHHHhcccchhhhh-cC
Confidence 55442222 2211 455555555555554 55
Q ss_pred CccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCC
Q 038149 411 PPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNA 490 (844)
Q Consensus 411 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 490 (844)
|+.++.+.+|..|++.+|++. .+|+ |.+|..|++++++.|++.-........++++..||+.+|++. ..|..+..+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 556666666666666666663 4553 355666666666666655333233345666666666666666 556666666
Q ss_pred CCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCC--CCCCEEe-------cCCCc---------Cc
Q 038149 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNL--EVARILD-------ISENK---------LY 552 (844)
Q Consensus 491 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l--~~L~~L~-------ls~n~---------l~ 552 (844)
.+|++||+|+|.++ .+|..++++ .|+.|.+.+|.+...-...+.+- .-|++|. ++.-. ..
T Consensus 275 rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 275 RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence 77777777777776 456667777 67777777776542111101000 0011110 11000 01
Q ss_pred ccCCCCCCCCCCcEEECCCCccccccCccccCCCC---CCEEECCCCcCCcccchhhhCCCCCCE-EEccCCcccccCCc
Q 038149 553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQ---LTTLDLRDNEFSGNIAHLINEDSNLRA-LLLRGNNLQGNIPE 628 (844)
Q Consensus 553 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~~~~~~l~~l~~L~~-L~L~~N~l~~~~p~ 628 (844)
+..|........+.|++++-+++ .+|........ .+.++++.|++. .+|..+..+..+.+ +.+++|+++ .+|.
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~ 429 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPL 429 (565)
T ss_pred Ccccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchH
Confidence 11222225567888999998888 67766655544 789999999998 67877777666664 455555555 8899
Q ss_pred ccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccc
Q 038149 629 PLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYM 708 (844)
Q Consensus 629 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 708 (844)
.++.+++|..|+|++|.+. .+|..++. +..|
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~------------------------------------------------lv~L 460 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLN-DLPEEMGS------------------------------------------------LVRL 460 (565)
T ss_pred HHHhhhcceeeecccchhh-hcchhhhh------------------------------------------------hhhh
Confidence 9999999999999999886 78887776 3468
Q ss_pred eEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCC
Q 038149 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYN 788 (844)
Q Consensus 709 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 788 (844)
+.||+|.|+|. .+|..+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|+.|++++|
T Consensus 461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCC
Confidence 89999999998 89998888888888888889998767777999999999999999998 89999999999999999999
Q ss_pred ccc
Q 038149 789 NLS 791 (844)
Q Consensus 789 ~l~ 791 (844)
++.
T Consensus 539 pfr 541 (565)
T KOG0472|consen 539 PFR 541 (565)
T ss_pred ccC
Confidence 998
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-37 Score=319.74 Aligned_cols=366 Identities=22% Similarity=0.254 Sum_probs=237.9
Q ss_pred CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149 128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207 (844)
Q Consensus 128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 207 (844)
+.||+++|.+...-+..|.++++|+.+++.+|.++. +| ....-..+|+.|+|.+|.|+ ++..+.+..++.|+.|||
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~--IP-~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR--IP-RFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhh--cc-cccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 446666666666666666667777777776666644 44 22233344666777776666 555556666666777777
Q ss_pred cCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCcccc
Q 038149 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVE 287 (844)
Q Consensus 208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~ 287 (844)
+.|.|+.+....|.+-.++++|+|++|+|+ .+..+.|..+.+|..|.|+.|+++ .+|...|.++++|+.|+|..|+|.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence 777666555555665566677777777766 555566666666777777777665 455556666666666666666665
Q ss_pred CC-CCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCC
Q 038149 288 TE-NFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN 366 (844)
Q Consensus 288 ~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 366 (844)
.. ...+-.+.+|+.|.+..|.+.......|..+.++++|+|+.|++...-..|++ +++.|+.|++++|.+.
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~------- 306 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQ------- 306 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhh-------
Confidence 44 33444555667777777777766666777777777777777777655555555 4444443333333333
Q ss_pred CCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCc
Q 038149 367 SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLE 446 (844)
Q Consensus 367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 446 (844)
..-++.+. .+++|++|+|++|+++...+..|..+..|++|.|++|.+. .+.+..|..+++|+
T Consensus 307 ----------------rih~d~Ws-ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 307 ----------------RIHIDSWS-FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLH 368 (873)
T ss_pred ----------------eeecchhh-hcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhh
Confidence 22222221 2677888888888887766777777778888888888775 56666667777788
Q ss_pred EEeCcCcccCCcCC---ccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149 447 FMNLSHNYFDGQIF---PKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS 523 (844)
Q Consensus 447 ~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls 523 (844)
.|||++|.++..+- ..|.++++|+.|.+.+|++..+...+|..+.+|+.|||.+|.|..+-|.+|..+ .|++|.+.
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 88888877765543 346667777777777777776666677777777777777777777777777776 77777665
Q ss_pred CCc
Q 038149 524 RNS 526 (844)
Q Consensus 524 ~n~ 526 (844)
.-.
T Consensus 448 Sss 450 (873)
T KOG4194|consen 448 SSS 450 (873)
T ss_pred ccc
Confidence 443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-39 Score=324.07 Aligned_cols=450 Identities=26% Similarity=0.366 Sum_probs=260.1
Q ss_pred CCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEc
Q 038149 274 SRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFL 353 (844)
Q Consensus 274 ~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l 353 (844)
..++.+.++.|.++...........+.+|++.+|++. ..|.+++.+..++.++.++|++. .+|..+. .+.++
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~-s~~~l----- 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIG-SLISL----- 116 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHh-hhhhh-----
Confidence 3444555555554444433333444555555555554 34444555555555555555554 3444443 44444
Q ss_pred CCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCC
Q 038149 354 FNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRD 433 (844)
Q Consensus 354 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 433 (844)
..++.+.|.+. ++|+.++. +-.++.++..+|+++ ..|+.++.+.+|..+++.+|++. .
T Consensus 117 ------------------~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~ 174 (565)
T KOG0472|consen 117 ------------------VKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-A 174 (565)
T ss_pred ------------------hhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-h
Confidence 44444444444 33444433 444555555555554 44445555555555555555553 3
Q ss_pred CChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhh-
Q 038149 434 LPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIG- 512 (844)
Q Consensus 434 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~- 512 (844)
.|+.... ++.|++|+...|.++ .+|+.++.+.+|..|++.+|++. .+| .|..++.|++|.++.|++. .+|....
T Consensus 175 l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~ 249 (565)
T KOG0472|consen 175 LPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLK 249 (565)
T ss_pred CCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhc
Confidence 3333322 455555555555443 34444555555555555555554 333 3445555555555555554 3443333
Q ss_pred cCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCc------------
Q 038149 513 KFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPN------------ 580 (844)
Q Consensus 513 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~------------ 580 (844)
+++++.+||+.+|+++ +.|..++.+++|++||+|+|.+++..+...++ .|+.|-+.+|.+. .+-.
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLK 326 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHH
Confidence 4555555555555554 44445555555555555555554433333333 4555555555442 1111
Q ss_pred ------------------------------cccCCCCCCEEECCCCcCCcccchhhhCCCC---CCEEEccCCcccccCC
Q 038149 581 ------------------------------ALLQSSQLTTLDLRDNEFSGNIAHLINEDSN---LRALLLRGNNLQGNIP 627 (844)
Q Consensus 581 ------------------------------~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~---L~~L~L~~N~l~~~~p 627 (844)
......+.+.|++++-+++ .+|+....... ....++++|++. ++|
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elP 404 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELP 404 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhh
Confidence 1122334555666665555 33333222222 455566666665 555
Q ss_pred cccCCCCCCCE-EEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccc
Q 038149 628 EPLCHLRKLAI-VDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLK 706 (844)
Q Consensus 628 ~~l~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 706 (844)
..+..+..+++ +++++|.+ +.+|..+.. ++
T Consensus 405 k~L~~lkelvT~l~lsnn~i-sfv~~~l~~------------------------------------------------l~ 435 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKI-SFVPLELSQ------------------------------------------------LQ 435 (565)
T ss_pred hhhHHHHHHHHHHHhhcCcc-ccchHHHHh------------------------------------------------hh
Confidence 55555544443 23333333 244444333 66
Q ss_pred cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEcc
Q 038149 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVS 786 (844)
Q Consensus 707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls 786 (844)
.|+.|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+..+..||.+-.++|++...-|+.+.+|.+|.+||+.
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 8899999999998 89999999999999999999999 899999999999999888999997767779999999999999
Q ss_pred CCcccccCCCCCcCCCcCccccCCCCCC
Q 038149 787 YNNLSGTVPNKGQFANFDESNYRGNPYL 814 (844)
Q Consensus 787 ~N~l~g~ip~~~~~~~~~~~~~~gn~~l 814 (844)
+|.+...+|.-|...++..+.+.|||+-
T Consensus 514 nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 514 NNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCchhhCChhhccccceeEEEecCCccC
Confidence 9999987777799999999999999975
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-37 Score=317.29 Aligned_cols=362 Identities=25% Similarity=0.249 Sum_probs=234.4
Q ss_pred EEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCC
Q 038149 179 VLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFD 258 (844)
Q Consensus 179 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~ 258 (844)
+||+++|++. .+....|.++++|+++++.+|.++ .+|...+...+|+.|+|.+|.|+ .+..+.++.++.|+.|||+.
T Consensus 82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence 4555555555 444444555555555555555555 34443334444555555555555 44445555555555555555
Q ss_pred CcccCccChhhhcCCCCCCEEEccCccccCCCCCCCC-CCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccC
Q 038149 259 NHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLP-KFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTF 337 (844)
Q Consensus 259 n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 337 (844)
|.++ ....+.++ ..++++|+|++|.|+......|..+.+|..|.|+.|+++ .+
T Consensus 159 N~is-------------------------~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tL 212 (873)
T KOG4194|consen 159 NLIS-------------------------EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TL 212 (873)
T ss_pred chhh-------------------------cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-cc
Confidence 5544 33222222 245666666667666666666666666666666666665 33
Q ss_pred chhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCcccccc
Q 038149 338 PTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYM 417 (844)
Q Consensus 338 p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 417 (844)
|. ..+..+++|+.|+|..|+|.-.---.|.++
T Consensus 213 p~------------------------------------------------r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 213 PQ------------------------------------------------RSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred CH------------------------------------------------HHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 33 333335555566666665542223456666
Q ss_pred ccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEE
Q 038149 418 ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLD 497 (844)
Q Consensus 418 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 497 (844)
++|+.|.+..|++. .+....|..+.++++|+|+.|++...--.++.++++|+.|++++|.|..+-+.++..+++|++|+
T Consensus 245 ~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 245 PSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD 323 (873)
T ss_pred hhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence 67777777777665 45555556677777777777777666666677777777777777777777777777778888888
Q ss_pred ccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC----CCCCCcEEECCCCc
Q 038149 498 VSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS----NHSSLRYLFPHNNS 573 (844)
Q Consensus 498 ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~----~~~~L~~L~l~~n~ 573 (844)
|++|+++..-++.|..+..|++|+|++|++...-...|..+++|++|||++|.++..+.... .+++|+.|.+.+|+
T Consensus 324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 324 LSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred ccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence 88888887777777888888888888888776666677778888888888888876554432 57777777888888
Q ss_pred cccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccC
Q 038149 574 LSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRG 619 (844)
Q Consensus 574 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 619 (844)
+....-.+|..+..|++|||.+|.|..+.|.+|..+ .|+.|.+..
T Consensus 404 lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 404 LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred eeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 776666677788888888888888877777777776 777776654
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3e-36 Score=329.58 Aligned_cols=419 Identities=29% Similarity=0.353 Sum_probs=262.1
Q ss_pred CCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEE
Q 038149 127 LKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELN 206 (844)
Q Consensus 127 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 206 (844)
++.|+++.|.+...+-+.+.+.-+|+.|++++|++.. +| ..+..+.+|+.|+++.|.|. .+| ....++.+|+++.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~--fp-~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS--FP-IQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRNLQYLN 97 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccccc--CC-chhhhHHHHhhcccchhhHh-hCc-hhhhhhhcchhhe
Confidence 6777777776655444555555557777777777644 44 45667777888888888776 555 3467778888888
Q ss_pred ccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccc
Q 038149 207 INENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQV 286 (844)
Q Consensus 207 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i 286 (844)
|..|.+. ..|..+..+++|++|+++.|.+. .+| ..+..++.++.+..++|..... ++.
T Consensus 98 L~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~-----lg~-------------- 155 (1081)
T KOG0618|consen 98 LKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQR-----LGQ-------------- 155 (1081)
T ss_pred eccchhh-cCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhh-----hcc--------------
Confidence 8877776 56777888888888888888876 777 6777777777777777722111 111
Q ss_pred cCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCC
Q 038149 287 ETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN 366 (844)
Q Consensus 287 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 366 (844)
..++.+++..|.+.+.++.....++. .|||.+|.+. ... ..++.+|+.+....|++..
T Consensus 156 ----------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~------ 213 (1081)
T KOG0618|consen 156 ----------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSE------ 213 (1081)
T ss_pred ----------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccce------
Confidence 12455666666666666666666665 6888888765 111 1234444444443333321
Q ss_pred CCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCc
Q 038149 367 SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLE 446 (844)
Q Consensus 367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 446 (844)
+.+ .-++++.|+.++|.++...+ ...-.+|+++++++|+++ .+| ++...|.+|+
T Consensus 214 -------l~~---------------~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle 267 (1081)
T KOG0618|consen 214 -------LEI---------------SGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLP-EWIGACANLE 267 (1081)
T ss_pred -------EEe---------------cCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cch-HHHHhcccce
Confidence 111 13667777777777762222 223356788888888886 566 5557777788
Q ss_pred EEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCc
Q 038149 447 FMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS 526 (844)
Q Consensus 447 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~ 526 (844)
.++..+|++. .+|..+...++|+.|.+.+|.+. .+|.....+++|++|+|..|++. ..|..+-
T Consensus 268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l-------------- 330 (1081)
T KOG0618|consen 268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFL-------------- 330 (1081)
T ss_pred EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHH--------------
Confidence 7777777773 45556666667777777777766 44555555666777777776665 3333211
Q ss_pred ccccCCccccCCCC-CCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccch
Q 038149 527 FEGDVSVQLSNLEV-ARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAH 604 (844)
Q Consensus 527 l~~~~~~~l~~l~~-L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 604 (844)
..... |+.|+.+.|++........ ..+.|+.|++.+|.++...-..+.+...|+.|+|++|++......
T Consensus 331 ---------~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 331 ---------AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ---------hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 11111 3344444444432221111 566777888888888777767777778888888888877744445
Q ss_pred hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccc
Q 038149 605 LINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647 (844)
Q Consensus 605 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 647 (844)
.+.++..|+.|+||+|+++ .+|..+..+..|++|...+|++.
T Consensus 402 ~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 5666777777777777776 55666666666666665555554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-35 Score=322.89 Aligned_cols=482 Identities=27% Similarity=0.381 Sum_probs=337.6
Q ss_pred EEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccC
Q 038149 204 ELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSR 283 (844)
Q Consensus 204 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 283 (844)
++|++...+. .+|..+-.-..++.|+++.|.+. ..|.+.+.+.-+|+.|++++|.+. .+|. .+..+..|+.|.++.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSR 77 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccch
Confidence 3566777666 56666655555888888888877 666566666667888999888875 4553 466777888888888
Q ss_pred ccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCccccccc
Q 038149 284 LQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ 363 (844)
Q Consensus 284 ~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~ 363 (844)
|.+...+.......+|+++.|..|.+. ..|..+..+.+|++||++.|++. .+|..+. .++.++.+..++|
T Consensus 78 n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N------- 147 (1081)
T KOG0618|consen 78 NYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNN------- 147 (1081)
T ss_pred hhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcc-------
Confidence 888777777777777888888877765 57777888888888888888775 5555444 4444444444444
Q ss_pred CCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCC
Q 038149 364 LPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCV 443 (844)
Q Consensus 364 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 443 (844)
..+..++. ..++.+++..|.+.+.++..+..++. .|+|++|.+. .+. ...++
T Consensus 148 ----------------~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~ 199 (1081)
T KOG0618|consen 148 ----------------EKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLA 199 (1081)
T ss_pred ----------------hhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhcc
Confidence 11111111 12566666666666666666665555 5777777764 222 35667
Q ss_pred CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149 444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS 523 (844)
Q Consensus 444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls 523 (844)
+|+.+....|++.... ..-++|+.|+.++|.++...+. ....+|+++++++|+++ .+|.|++.+.+|+.+...
T Consensus 200 ~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNAN 272 (1081)
T ss_pred chhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEeccc
Confidence 7777777777765432 2345777777777777733222 22467888888888887 456888888888888888
Q ss_pred CCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccc-cCCC-CCCEEECCCCcCCcc
Q 038149 524 RNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNAL-LQSS-QLTTLDLRDNEFSGN 601 (844)
Q Consensus 524 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l-~~l~-~L~~L~Ls~N~l~~~ 601 (844)
+|+++ .+|..+....+|+.|.+..|.+.-..+.....+.|+.|+|..|++. .+|+.+ .-.. +|+.|+.+.|++...
T Consensus 273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 273 HNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred chhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccc
Confidence 88884 6777777778888888888888765555556788888888888887 444433 2232 367777777777643
Q ss_pred cchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCch-hhccccccccCcccccccccCCCcccc
Q 038149 602 IAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSC-FTNISLWMEKGNYYNSTLSLALPAEDN 680 (844)
Q Consensus 602 ~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~ 680 (844)
....=..++.|+.|++.+|.++...-..+.+...|++|+|++|++. .+|+. +.+
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k------------------------ 405 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK------------------------ 405 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhc------------------------
Confidence 3222234567888899999888776667888888999999999886 55553 333
Q ss_pred cccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEe
Q 038149 681 RESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMD 760 (844)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 760 (844)
+..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.++++|+.+|
T Consensus 406 ------------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 406 ------------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ------------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 456788899999998 88888889999999999889888 777 788899999999
Q ss_pred CCCCcccccC-CccccCCCCCCEEEccCCc
Q 038149 761 LSYNKLNGQI-PPELGELSFLAIFNVSYNN 789 (844)
Q Consensus 761 Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~ 789 (844)
+|.|+|+-.. |.... -+.|++||+++|.
T Consensus 459 lS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 9999888543 33322 2788999999887
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.3e-34 Score=298.27 Aligned_cols=368 Identities=23% Similarity=0.322 Sum_probs=310.2
Q ss_pred CCCCEEEccCCccc-ccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcE
Q 038149 369 RNLPHLVISNNSFI-GKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEF 447 (844)
Q Consensus 369 ~~L~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 447 (844)
+-.+-.++++|.++ +.+|..... +++++.|.|...++. .+|+.++.+.+|+.|.+++|++. .+-.. ++.++.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHH
Confidence 34556788888887 467877765 889999999999987 78999999999999999999986 34443 367899999
Q ss_pred EeCcCcccCCc-CCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCc
Q 038149 448 MNLSHNYFDGQ-IFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS 526 (844)
Q Consensus 448 L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~ 526 (844)
+.+.+|++... +|..+..+..|+.|+|++|++. ..|..+...+++-+|+||+|+|..+.-..|-+++.|-.|++++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 99999988643 6788889999999999999998 678888889999999999999985444556788999999999999
Q ss_pred ccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccc-cccCccccCCCCCCEEECCCCcCCcccch
Q 038149 527 FEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLS-GTIPNALLQSSQLTTLDLRDNEFSGNIAH 604 (844)
Q Consensus 527 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 604 (844)
+. .+|+.+..+..|++|++++|++...--... .+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..|+
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 87 677788999999999999998854222222 6778888999887643 358899999999999999999998 7899
Q ss_pred hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccc
Q 038149 605 LINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESS 684 (844)
Q Consensus 605 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (844)
++-.+.+|+.|+|++|+|+ .+........+|+.|++|+|+++ .+|+++..
T Consensus 240 cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK---------------------------- 289 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK---------------------------- 289 (1255)
T ss_pred HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh----------------------------
Confidence 9999999999999999998 66667777889999999999998 88888876
Q ss_pred cceeeeeeeccccccccccccccceEEEeecCccc-CCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCC
Q 038149 685 QRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELT-GDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSY 763 (844)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~ 763 (844)
++.|+.|++.+|+++ .-||..||.|.+|+++..++|.+. ..|+.+..+..|+.|.|++
T Consensus 290 --------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 290 --------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred --------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence 456788888889876 368999999999999999999998 8999999999999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcccccCC
Q 038149 764 NKLNGQIPPELGELSFLAIFNVSYNNLSGTVP 795 (844)
Q Consensus 764 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 795 (844)
|++. .+|+.+.-|+.|+.||+..|+=---+|
T Consensus 349 NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 349 NRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 9998 789999999999999999997443333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6e-34 Score=297.18 Aligned_cols=369 Identities=26% Similarity=0.345 Sum_probs=322.0
Q ss_pred CCCccEEEccCCcCC-CCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCE
Q 038149 393 LPELVYLDMSQNSFE-GSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVF 471 (844)
Q Consensus 393 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 471 (844)
+|-.+-+|+++|.++ +..|.....|++++.|.|...++. .+|+.+ +.+.+|++|.+++|++.. +...+..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence 566788999999998 578999999999999999999995 899886 789999999999999974 4577889999999
Q ss_pred ecCCCCcCcc-cccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCc
Q 038149 472 LFLNDNQFTG-RLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENK 550 (844)
Q Consensus 472 L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~ 550 (844)
+.+.+|++.. -+|..+..+..|+.||||+|++. ..|..+..-+++-+|++++|++..+....+.+++.|-.||+|+|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 9999999864 37888889999999999999999 789999999999999999999986666678899999999999999
Q ss_pred CcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCC-cccchhhhCCCCCCEEEccCCcccccCCcc
Q 038149 551 LYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS-GNIAHLINEDSNLRALLLRGNNLQGNIPEP 629 (844)
Q Consensus 551 l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~ 629 (844)
+....|....+..|+.|.|++|.+.-.--..+-.+++|++|++++.+=+ ..+|..+..+.+|..++++.|.+. .+|+.
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 9877777668999999999999986544445556788999999987644 568889999999999999999998 88999
Q ss_pred cCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccce
Q 038149 630 LCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMT 709 (844)
Q Consensus 630 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 709 (844)
+.++++|+.|+||+|+|+. +..+.+. -.+|+
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~~~~~~------------------------------------------------W~~lE 271 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LNMTEGE------------------------------------------------WENLE 271 (1255)
T ss_pred HhhhhhhheeccCcCceee-eeccHHH------------------------------------------------Hhhhh
Confidence 9999999999999999972 2111111 23678
Q ss_pred EEEeecCcccCCCCchhhhccccCeEeccCccccc-ccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCC
Q 038149 710 GLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSG-SIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYN 788 (844)
Q Consensus 710 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 788 (844)
+|+||+|+++ .+|..++.|+.|+.|++.+|+++- -||+.++.|.+|+.+..++|.+. .+|+++..+..|+.|+|++|
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccc
Confidence 9999999999 999999999999999999999974 49999999999999999999998 89999999999999999999
Q ss_pred cccccCCCC-CcCCCcCccccCCCCCCcCcc
Q 038149 789 NLSGTVPNK-GQFANFDESNYRGNPYLCGPA 818 (844)
Q Consensus 789 ~l~g~ip~~-~~~~~~~~~~~~gn~~lc~~~ 818 (844)
++.. +|+. ..+..++.+.+..||.|--||
T Consensus 350 rLiT-LPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 350 RLIT-LPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ceee-chhhhhhcCCcceeeccCCcCccCCC
Confidence 9984 6665 566678888899999988665
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=7.8e-23 Score=252.28 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=32.7
Q ss_pred cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCC
Q 038149 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYN 764 (844)
Q Consensus 707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 764 (844)
+++.|+|++|.++ .+|.++..+++|++|+|++|+--..+|..+..+++|+.+++++|
T Consensus 847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 4555666666665 55666666666666666653222245555566666666666655
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.6e-22 Score=249.60 Aligned_cols=335 Identities=18% Similarity=0.215 Sum_probs=191.0
Q ss_pred CCCCccEEEccCCcC------CCCCCccccccc-cCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCcccc
Q 038149 392 ILPELVYLDMSQNSF------EGSIPPSMGYME-RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYM 464 (844)
Q Consensus 392 ~l~~L~~L~Ls~n~l------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 464 (844)
.+++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+. .+|..+ .+.+|+.|++.+|++.. ++..+.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~~~~~ 631 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LWDGVH 631 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-cccccc
Confidence 355555555544321 123444444432 4666666666553 555543 34566666666666542 344455
Q ss_pred CCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEE
Q 038149 465 NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARIL 544 (844)
Q Consensus 465 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 544 (844)
.+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence 566666666665544334443 5556666666666665545566666666666666666655444555443 55666666
Q ss_pred ecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcC-------CcccchhhhCCCCCCEEEc
Q 038149 545 DISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEF-------SGNIAHLINEDSNLRALLL 617 (844)
Q Consensus 545 ~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-------~~~~~~~l~~l~~L~~L~L 617 (844)
++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|+.|++.++.. ....+......++|+.|+|
T Consensus 710 ~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 710 NLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred eCCCCCCccccccc--cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 66666544444332 345666666666655 455443 355666666655321 1111222233456777777
Q ss_pred cCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeecccc
Q 038149 618 RGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRY 697 (844)
Q Consensus 618 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (844)
++|...+.+|.+++++++|+.|++++|...+.+|..+ +
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~----------------------------------------- 823 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N----------------------------------------- 823 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-----------------------------------------
Confidence 7776666677777777777777777765444444432 1
Q ss_pred ccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCC
Q 038149 698 ESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGEL 777 (844)
Q Consensus 698 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 777 (844)
+++|+.|+|++|.....+|.. ..+|+.|+|++|.++ .+|.++..+++|+.|+|++|+--..+|..+..+
T Consensus 824 -------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 824 -------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred -------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 345667777776554455543 246677777777776 567777777777777777633223466666777
Q ss_pred CCCCEEEccCCc
Q 038149 778 SFLAIFNVSYNN 789 (844)
Q Consensus 778 ~~L~~L~ls~N~ 789 (844)
++|+.+++++|.
T Consensus 893 ~~L~~L~l~~C~ 904 (1153)
T PLN03210 893 KHLETVDFSDCG 904 (1153)
T ss_pred cCCCeeecCCCc
Confidence 777777777664
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=6.4e-26 Score=226.36 Aligned_cols=276 Identities=20% Similarity=0.163 Sum_probs=170.8
Q ss_pred CCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccC-CcCCCCCChhhhhcCCCCcEE
Q 038149 370 NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSS-NNFSRDLPKHFLTSCVSLEFM 448 (844)
Q Consensus 370 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L 448 (844)
.-..++|..|+++ .+|...+..+++|+.|||++|.|+.+-|.+|.++.+|..|-+.+ |+|+ .+|...|.++.+++.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 3445555556555 55555555566666666666666655566666666655555444 5554 5666666666666666
Q ss_pred eCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccC------------cCCChhhhcCCC
Q 038149 449 NLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS------------GQLPRWIGKFSN 516 (844)
Q Consensus 449 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~------------~~~p~~l~~l~~ 516 (844)
.+.-|++.-.....|..+++|..|.+.+|.+..+-...|..+.+++.+.+..|.+. ...|..++....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 66666665555555556666666666666555333334555555555555555421 111222222222
Q ss_pred CCEEeCCCCcccccCCccccC-CCCCCEEecCCCcCcccCCCC-C-CCCCCcEEECCCCccccccCccccCCCCCCEEEC
Q 038149 517 LDVLLMSRNSFEGDVSVQLSN-LEVARILDISENKLYGPLEFS-S-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDL 593 (844)
Q Consensus 517 L~~L~ls~n~l~~~~~~~l~~-l~~L~~L~ls~n~l~~~~~~~-~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 593 (844)
..-..+.+.++..+-+..|.. +..+..--.+.+...+..|.. + .+++|+.|++++|+++++-+.+|.....+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 222233333332222222211 111111112223233333332 2 7889999999999999999999999999999999
Q ss_pred CCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccc
Q 038149 594 RDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647 (844)
Q Consensus 594 s~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 647 (844)
..|++...-..+|.++..|+.|+|.+|+|+..-|.+|..+.+|..|+|-.|++.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999998777788999999999999999999889999999999999999998875
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=8e-25 Score=218.58 Aligned_cols=394 Identities=20% Similarity=0.213 Sum_probs=267.7
Q ss_pred cCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcC-cccCCcCCcc
Q 038149 384 KLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSH-NYFDGQIFPK 462 (844)
Q Consensus 384 ~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~ 462 (844)
++|..+ .+.-+.++|..|+|+...+.+|..+++|+.|||++|.|+ .|.++.|.+++++..|-+.+ |+|+......
T Consensus 60 eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 60 EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 667665 457889999999999777789999999999999999997 56666678899888877766 8999888888
Q ss_pred ccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccc------------c
Q 038149 463 YMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG------------D 530 (844)
Q Consensus 463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~------------~ 530 (844)
|.++..|+.|.+.-|++.......|..+++|..|.+.+|.+..+--..|..+..++.+.+..|.+.. .
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 9999999999999999998888999999999999999999985444588999999999999988432 2
Q ss_pred CCccccCCCCCCEEecCCCcCcccCCCCCCC--CCCcEEECCCCccccccC-ccccCCCCCCEEECCCCcCCcccchhhh
Q 038149 531 VSVQLSNLEVARILDISENKLYGPLEFSSNH--SSLRYLFPHNNSLSGTIP-NALLQSSQLTTLDLRDNEFSGNIAHLIN 607 (844)
Q Consensus 531 ~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~l~ 607 (844)
.|..++......-..+.+.++....+..+.+ ..+..=..+.+...+..| ..|..+++|++|+|++|+++++-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 2333444444444444444443333332211 123222233443444444 4688999999999999999999999999
Q ss_pred CCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcccccc---ccCcccccccccCCCcccccc--
Q 038149 608 EDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWM---EKGNYYNSTLSLALPAEDNRE-- 682 (844)
Q Consensus 608 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~-- 682 (844)
++..++.|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+..+. ...+.++....+.+-..+.+.
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 999999999999999877777899999999999999999999999887665432 222332222111111110000
Q ss_pred --------cccceeeeeeecccccccccc---------------ccccce-EEEeecCcccCCCCchhhhccccCeEecc
Q 038149 683 --------SSQRVEVKFMAKNRYESYKGD---------------VLKYMT-GLDLSSNELTGDIPSEIGYLGEIHALNLS 738 (844)
Q Consensus 683 --------~~~~~~~~~~~~~~~~~~~~~---------------~l~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 738 (844)
++..+...-++...+..+..+ ..+-+. ...-|+..+. .+|..+. ..-..|++.
T Consensus 376 ~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~ 452 (498)
T KOG4237|consen 376 VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLD 452 (498)
T ss_pred CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcc
Confidence 000111111111111111100 011111 1223333333 4443332 234567888
Q ss_pred CcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCC
Q 038149 739 NNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYN 788 (844)
Q Consensus 739 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 788 (844)
+|.++ .+|.+ .+.+| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus 453 gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 453 GNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 88887 67776 66777 7888888887666677788888888888876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=6e-22 Score=226.04 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=42.6
Q ss_pred CccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecC
Q 038149 395 ELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFL 474 (844)
Q Consensus 395 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 474 (844)
.-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|. .+++|++|++++|+++.. |. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 4556777777777 5666554 36777777777775 4553 245666666666666532 21 1234455555
Q ss_pred CCCcCc
Q 038149 475 NDNQFT 480 (844)
Q Consensus 475 ~~n~l~ 480 (844)
++|.+.
T Consensus 270 s~N~L~ 275 (788)
T PRK15387 270 FSNPLT 275 (788)
T ss_pred cCCchh
Confidence 555444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.2e-21 Score=221.40 Aligned_cols=265 Identities=27% Similarity=0.334 Sum_probs=137.3
Q ss_pred CCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeC
Q 038149 371 LPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNL 450 (844)
Q Consensus 371 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 450 (844)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|.. +++|++|++++|+++ .+|. ..++|+.|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPV----LPPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccC----cccccceeec
Confidence 445666666665 5665542 35666777777666 34432 356677777777665 4553 2356666777
Q ss_pred cCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccccc
Q 038149 451 SHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGD 530 (844)
Q Consensus 451 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 530 (844)
++|.+... |.. .++|+.|++++|+++. +|.. +++|+.|++++|++++ +|.. ..+|+.|+++
T Consensus 270 s~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls------- 330 (788)
T PRK15387 270 FSNPLTHL-PAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAY------- 330 (788)
T ss_pred cCCchhhh-hhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccc-------
Confidence 76666532 211 2345555555555542 2221 2345555555554442 2221 1123333333
Q ss_pred CCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCC
Q 038149 531 VSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDS 610 (844)
Q Consensus 531 ~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 610 (844)
+|+++ .+|.. ..+|+.|+|++|++++ +|.. ..
T Consensus 331 ----------------------------------------~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~ 362 (788)
T PRK15387 331 ----------------------------------------NNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTL---PS 362 (788)
T ss_pred ----------------------------------------cCccc-ccccc---ccccceEecCCCccCC-CCCC---Cc
Confidence 33333 12221 1234555555555542 2321 23
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeee
Q 038149 611 NLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVK 690 (844)
Q Consensus 611 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (844)
+|+.|++++|+++ .+|... .+|+.|++++|+|++ +|..
T Consensus 363 ~L~~L~Ls~N~L~-~LP~l~---~~L~~LdLs~N~Lt~-LP~l------------------------------------- 400 (788)
T PRK15387 363 ELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLTS-LPVL------------------------------------- 400 (788)
T ss_pred ccceehhhccccc-cCcccc---cccceEEecCCcccC-CCCc-------------------------------------
Confidence 4555555555555 244322 345666666666652 3321
Q ss_pred eeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccC
Q 038149 691 FMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQI 770 (844)
Q Consensus 691 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 770 (844)
...|+.|++++|+++ .+|... ..|+.|++++|+|+ .+|..+.++++|+.|+|++|+|+|.+
T Consensus 401 --------------~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 401 --------------PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred --------------ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 123556666666666 355432 34566777777776 56766777777777777777777666
Q ss_pred CccccC
Q 038149 771 PPELGE 776 (844)
Q Consensus 771 p~~l~~ 776 (844)
|..+..
T Consensus 462 ~~~L~~ 467 (788)
T PRK15387 462 LQALRE 467 (788)
T ss_pred HHHHHH
Confidence 665543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=8.6e-20 Score=210.14 Aligned_cols=119 Identities=24% Similarity=0.275 Sum_probs=67.2
Q ss_pred CCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEec
Q 038149 394 PELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLF 473 (844)
Q Consensus 394 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 473 (844)
.+...|++++++++ .+|..+. +.|+.|++++|+++ .+|..++ ++|+.|++++|+++. +|..+ .+.|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEE
Confidence 45678888888887 4665543 46888888888886 5776543 467777777777663 33322 13455555
Q ss_pred CCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccc
Q 038149 474 LNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE 528 (844)
Q Consensus 474 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 528 (844)
+++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 5555555 3343331 34555555555554 2343321 24444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.4e-19 Score=208.28 Aligned_cols=182 Identities=23% Similarity=0.333 Sum_probs=106.7
Q ss_pred CCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeC
Q 038149 443 VSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLM 522 (844)
Q Consensus 443 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 522 (844)
.+.+.|++++++++. +|..+ .+.|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 346677888777764 34333 246777888888777 3454442 57778888887777 4565443 36777777
Q ss_pred CCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCccc
Q 038149 523 SRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI 602 (844)
Q Consensus 523 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 602 (844)
++|.+. .+|..+. .+|+.|++++|++.. +|... ..+|+.|++++|+++ .+|..+. ++|+.|++++|+++. +
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l-~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENL-PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCc-ccccc-CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence 777776 4555443 356777777776653 33322 235666666666665 3443332 345666666666653 3
Q ss_pred chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccc
Q 038149 603 AHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLN 647 (844)
Q Consensus 603 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 647 (844)
|..+ .++|++|++++|.+++ +|..+. ++|+.|++++|+|+
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 3322 2456666666666653 444442 45666666666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=4.1e-19 Score=190.97 Aligned_cols=67 Identities=28% Similarity=0.464 Sum_probs=33.6
Q ss_pred cccCCCCCCEEECCCCcCCcc----cchhhhCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEcCCCccc
Q 038149 581 ALLQSSQLTTLDLRDNEFSGN----IAHLINEDSNLRALLLRGNNLQGN----IPEPLCHLRKLAIVDISYNTLN 647 (844)
Q Consensus 581 ~l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 647 (844)
.+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|+++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 444455566666666665531 222333444555555555555422 2233444555555666555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.8e-19 Score=192.32 Aligned_cols=280 Identities=24% Similarity=0.224 Sum_probs=162.8
Q ss_pred EEeCcCcccCC-cCCccccCCCCcCEecCCCCcCccc----ccccccCCCCCcEEEccCcccCc------CCChhhhcCC
Q 038149 447 FMNLSHNYFDG-QIFPKYMNLAKLVFLFLNDNQFTGR----LEVGLLNASSLYVLDVSNNMLSG------QLPRWIGKFS 515 (844)
Q Consensus 447 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~------~~p~~l~~l~ 515 (844)
.|+|..+.+++ .....+..+..|+.++++++.++.. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 45666666653 2333445556677777777776432 33344455566666666665542 1223344455
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccc----ccCccccCC-CCCCE
Q 038149 516 NLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSG----TIPNALLQS-SQLTT 590 (844)
Q Consensus 516 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~----~~p~~l~~l-~~L~~ 590 (844)
+|+.|++++|.+.+..+..+..+.. . ++|+.|++++|++++ .+...+..+ ++|+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 5555555555554333333322222 1 224444444444441 233345555 77888
Q ss_pred EECCCCcCCcc----cchhhhCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEcCCCccccCCCchhhccccccc
Q 038149 591 LDLRDNEFSGN----IAHLINEDSNLRALLLRGNNLQGN----IPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWME 662 (844)
Q Consensus 591 L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~ 662 (844)
|++++|.+++. ++..+..++.|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+...-
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~---- 217 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL---- 217 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh----
Confidence 88888888732 344566677888888888888742 334455667888888888887643332222100
Q ss_pred cCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhh-----ccccCeEec
Q 038149 663 KGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGY-----LGEIHALNL 737 (844)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-----l~~L~~L~L 737 (844)
..+++|++|++++|.+++.....+.. .+.|+.|++
T Consensus 218 ----------------------------------------~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 218 ----------------------------------------ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred ----------------------------------------cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence 11456788888888877533333332 267888888
Q ss_pred cCcccc----cccCcccccccCCCEEeCCCCccccc----CCccccCC-CCCCEEEccCCcc
Q 038149 738 SNNFLS----GSIPRSFSNLKMTESMDLSYNKLNGQ----IPPELGEL-SFLAIFNVSYNNL 790 (844)
Q Consensus 738 s~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~L~ls~N~l 790 (844)
++|.++ ..++..+..+++|+.+|+++|.++.. +...+... +.|+.+++.+|++
T Consensus 258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 888776 23444556667788888888888744 44444444 6677777777753
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=7.1e-20 Score=162.40 Aligned_cols=187 Identities=25% Similarity=0.449 Sum_probs=154.8
Q ss_pred CCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCC
Q 038149 555 LEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLR 634 (844)
Q Consensus 555 ~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 634 (844)
++..+.+.....|.+++|+++ .+|..+..+.+|+.|++++|++. ..|..++.+++|+.|+++-|++. ..|..|+.++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 344446667777888888888 77888999999999999999998 67888999999999999999998 8899999999
Q ss_pred CCCEEEcCCCcccc-CCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEe
Q 038149 635 KLAIVDISYNTLNG-PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDL 713 (844)
Q Consensus 635 ~L~~L~Ls~N~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 713 (844)
.|++|||++|++.. .+|..|.- ++.|+.|+|
T Consensus 103 ~levldltynnl~e~~lpgnff~------------------------------------------------m~tlralyl 134 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFY------------------------------------------------MTTLRALYL 134 (264)
T ss_pred hhhhhhccccccccccCCcchhH------------------------------------------------HHHHHHHHh
Confidence 99999999999874 45655543 346677899
Q ss_pred ecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCC---CEEEccCCcc
Q 038149 714 SSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFL---AIFNVSYNNL 790 (844)
Q Consensus 714 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L---~~L~ls~N~l 790 (844)
+.|.|. .+|.++++++.|+.|.+..|.+- .+|..++.+++|+.|.+.+|+++ .+|.+++.+.-. +.+.+.+|+.
T Consensus 135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCC
Confidence 999998 88999999999999999999988 78999999999999999999998 788888776533 4566777777
Q ss_pred cccCC
Q 038149 791 SGTVP 795 (844)
Q Consensus 791 ~g~ip 795 (844)
..+|-
T Consensus 212 v~pIa 216 (264)
T KOG0617|consen 212 VNPIA 216 (264)
T ss_pred CChHH
Confidence 65554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=6.7e-19 Score=156.26 Aligned_cols=181 Identities=27% Similarity=0.444 Sum_probs=160.5
Q ss_pred ccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcccccc
Q 038149 582 LLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWM 661 (844)
Q Consensus 582 l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~ 661 (844)
+.++...+.|.||+|+++ .+|..+..+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. .+|..|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs----- 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS----- 100 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-----
Confidence 456778889999999999 66778999999999999999999 88999999999999999999997 78888876
Q ss_pred ccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccC-CCCchhhhccccCeEeccCc
Q 038149 662 EKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG-DIPSEIGYLGEIHALNLSNN 740 (844)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N 740 (844)
++.|+.|||.+|++.. .+|..|-.++.|+.|+|+.|
T Consensus 101 -------------------------------------------~p~levldltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 101 -------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred -------------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence 5678899999999975 67999999999999999999
Q ss_pred ccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCc---cccCCCCCCc
Q 038149 741 FLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDE---SNYRGNPYLC 815 (844)
Q Consensus 741 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~---~~~~gn~~lc 815 (844)
.+. .+|..++++++|+.|.+..|.+- .+|.+++.++.|+.|.+.+|+++-..|+.+++.-... ...+.||+.-
T Consensus 138 dfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 138 DFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred Ccc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 998 89999999999999999999998 7999999999999999999999988887766654322 3356788764
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=7.4e-14 Score=161.06 Aligned_cols=119 Identities=39% Similarity=0.685 Sum_probs=108.5
Q ss_pred cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEcc
Q 038149 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVS 786 (844)
Q Consensus 707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls 786 (844)
.++.|+|++|.++|.+|.+++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCC--CcCCCcCccccCCCCCCcCccCCCCCCC
Q 038149 787 YNNLSGTVPNK--GQFANFDESNYRGNPYLCGPAVRKNCSS 825 (844)
Q Consensus 787 ~N~l~g~ip~~--~~~~~~~~~~~~gn~~lc~~~~~~~c~~ 825 (844)
+|+++|.+|.. ..+..+....+.||+++|+.|....|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~ 539 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 539 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcc
Confidence 99999999975 2334455678999999999876667853
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.42 E-value=6.9e-15 Score=154.60 Aligned_cols=188 Identities=27% Similarity=0.437 Sum_probs=152.8
Q ss_pred CcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCC
Q 038149 564 LRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISY 643 (844)
Q Consensus 564 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 643 (844)
-...+++.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|++|+|+.|+++ ..|..++.|+ |+.|-+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 345566677766 78888888888888899998888 78888889999999999999998 7888888887 88999999
Q ss_pred CccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCC
Q 038149 644 NTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP 723 (844)
Q Consensus 644 N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 723 (844)
|+++ .+|..++. ...|..||.|.|.+. .+|
T Consensus 153 Nkl~-~lp~~ig~------------------------------------------------~~tl~~ld~s~nei~-slp 182 (722)
T KOG0532|consen 153 NKLT-SLPEEIGL------------------------------------------------LPTLAHLDVSKNEIQ-SLP 182 (722)
T ss_pred Cccc-cCCccccc------------------------------------------------chhHHHhhhhhhhhh-hch
Confidence 9987 67776652 456788999999998 889
Q ss_pred chhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCC---CCcC
Q 038149 724 SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN---KGQF 800 (844)
Q Consensus 724 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~---~~~~ 800 (844)
..++++.+|+.|++..|++. .+|.++..|+ |..||+|+|+++ .||-.|.+|..|++|-|.+|+|..+.-+ .|..
T Consensus 183 sql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKV 259 (722)
T ss_pred HHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccce
Confidence 99999999999999999998 7788888665 889999999998 8999999999999999999999753322 2555
Q ss_pred CCcCcccc
Q 038149 801 ANFDESNY 808 (844)
Q Consensus 801 ~~~~~~~~ 808 (844)
.-|+-++.
T Consensus 260 HIFKyL~~ 267 (722)
T KOG0532|consen 260 HIFKYLST 267 (722)
T ss_pred eeeeeecc
Confidence 55554443
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.40 E-value=1.6e-12 Score=150.07 Aligned_cols=152 Identities=28% Similarity=0.429 Sum_probs=92.9
Q ss_pred CCCcHHHHHHHHHhhhcccccccccccccccCCCcCCCCCCCC----CCCceEecCC--CC--ceEEEeeCcCcccCCCC
Q 038149 9 KSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCC----TWERIKCNAT--TG--RVMELSLDSAIQVDSDD 80 (844)
Q Consensus 9 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~C----~w~gv~c~~~--~~--~V~~l~L~~~~~~~~~~ 80 (844)
..+.++|.+||++||+.+.. +. ..+|.. ..|| .|.||.|... .+ +|+.|+|+++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~----~~----~~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n------- 428 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGL----PL----RFGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ------- 428 (623)
T ss_pred cccCchHHHHHHHHHHhcCC----cc----cCCCCC---CCCCCcccccccceeeccCCCCceEEEEEECCCC-------
Confidence 45677899999999998853 22 248953 3443 7999999631 11 3555555554
Q ss_pred CCCCCcccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCC
Q 038149 81 VNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNS 160 (844)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 160 (844)
.+.+..+ ..++.+++|++|+|++|.+.+.+|..++.+++|++|+|++|.
T Consensus 429 ---------------------------~L~g~ip----~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ 477 (623)
T PLN03150 429 ---------------------------GLRGFIP----NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477 (623)
T ss_pred ---------------------------CccccCC----HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC
Confidence 4444444 345556666666666666666666666666666666666666
Q ss_pred CCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCC-CCCCcEEEccCCcC
Q 038149 161 FSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICD-LKNLVELNINENEF 212 (844)
Q Consensus 161 l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~-l~~L~~L~L~~n~l 212 (844)
+ .+.+| ..++++++|++|+|++|.++|.+|.. +.. ..++..+++.+|..
T Consensus 478 l-sg~iP-~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 478 F-NGSIP-ESLGQLTSLRILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred C-CCCCc-hHHhcCCCCCEEECcCCcccccCChH-HhhccccCceEEecCCcc
Confidence 6 44454 45666666666666666666666543 333 34556666666653
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=4.3e-12 Score=140.36 Aligned_cols=122 Identities=27% Similarity=0.389 Sum_probs=52.4
Q ss_pred EEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCC-CCcEEECCCCccccccCccccCCCCCCEEECCCCc
Q 038149 519 VLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHS-SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE 597 (844)
Q Consensus 519 ~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 597 (844)
.+....|.+...+. .+..++.++.|++.+|.+....+...... +|+.|++++|++. .+|..+..++.|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 45555555432221 22333445555555555543333222331 4444444444444 333344444444444444444
Q ss_pred CCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149 598 FSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN 644 (844)
Q Consensus 598 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 644 (844)
+. .+|...+..+.|+.|++++|+++ .+|........|+.+++++|
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 44 22332223444444444444444 33333333333444444444
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1.3e-13 Score=145.05 Aligned_cols=155 Identities=30% Similarity=0.451 Sum_probs=86.8
Q ss_pred cEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCc
Q 038149 494 YVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNS 573 (844)
Q Consensus 494 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~ 573 (844)
...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..++++..|++++++.|+++... .....--|+.|.+++|+
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp-~~lC~lpLkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLP-DGLCDLPLKVLIVSNNK 154 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCC-hhhhcCcceeEEEecCc
Confidence 34555555555 45555555555555556555554 44555555555555555555554221 11112234555555555
Q ss_pred cccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCch
Q 038149 574 LSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSC 653 (844)
Q Consensus 574 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 653 (844)
++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|.++.|++. .+|..++.|+ |..||+|.|+++ .+|.+
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchh
Confidence 55 56666666666666666666666 45555666666666666666665 4555555443 555666666655 55555
Q ss_pred hhc
Q 038149 654 FTN 656 (844)
Q Consensus 654 ~~~ 656 (844)
|.+
T Consensus 230 fr~ 232 (722)
T KOG0532|consen 230 FRK 232 (722)
T ss_pred hhh
Confidence 544
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=2.3e-11 Score=134.54 Aligned_cols=101 Identities=29% Similarity=0.388 Sum_probs=45.6
Q ss_pred EecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCC-CCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcc
Q 038149 544 LDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSS-QLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNL 622 (844)
Q Consensus 544 L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l 622 (844)
++++.|.+...+......+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..++.+++|+.|++++|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh
Confidence 44444444322222223344555555555554 3343344332 4555555555544 2333444455555555555555
Q ss_pred cccCCcccCCCCCCCEEEcCCCccc
Q 038149 623 QGNIPEPLCHLRKLAIVDISYNTLN 647 (844)
Q Consensus 623 ~~~~p~~l~~l~~L~~L~Ls~N~l~ 647 (844)
+ .+|...+.++.|+.|++++|+++
T Consensus 176 ~-~l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 176 S-DLPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred h-hhhhhhhhhhhhhheeccCCccc
Confidence 4 33333334445555555555544
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.2e-11 Score=120.29 Aligned_cols=88 Identities=28% Similarity=0.334 Sum_probs=53.3
Q ss_pred cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccccc-CCccccCCCCCCEE
Q 038149 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQ-IPPELGELSFLAIF 783 (844)
Q Consensus 705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L 783 (844)
+++|+.||||+|.++ .+-.+-..+.+.+.|.|+.|.|.. -+.++.|-+|+.||+++|+|... --..+++|+-|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 345666666666665 444444455566666666666641 23456666667777777766532 12456777777777
Q ss_pred EccCCcccccCC
Q 038149 784 NVSYNNLSGTVP 795 (844)
Q Consensus 784 ~ls~N~l~g~ip 795 (844)
-|.+|++++.+-
T Consensus 405 ~L~~NPl~~~vd 416 (490)
T KOG1259|consen 405 RLTGNPLAGSVD 416 (490)
T ss_pred hhcCCCccccch
Confidence 777887776443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.3e-10 Score=109.58 Aligned_cols=126 Identities=37% Similarity=0.438 Sum_probs=39.5
Q ss_pred CCCCEEECCCCCCCCCCcCccccc-CCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccc-cCCCCC
Q 038149 149 TSLTSLFLQGNSFSEGFKHNKGLV-NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCL-SNLTYL 226 (844)
Q Consensus 149 ~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L 226 (844)
.++++|+|.+|.|+. +. .+. .+.+|+.|+|++|.|+ .+ +.+..+++|++|++++|+|+.. ...+ ..+++|
T Consensus 19 ~~~~~L~L~~n~I~~--Ie--~L~~~l~~L~~L~Ls~N~I~-~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L 90 (175)
T PF14580_consen 19 VKLRELNLRGNQIST--IE--NLGATLDKLEVLDLSNNQIT-KL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccc--cc--chhhhhcCCCEEECCCCCCc-cc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence 344555555555532 21 233 3556666666666665 23 2456666666666666666643 2233 346667
Q ss_pred CEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCcc--ChhhhcCCCCCCEEEcc
Q 038149 227 RVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESF--PLSVLANHSRLEVFQLS 282 (844)
Q Consensus 227 ~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~--~~~~l~~l~~L~~L~l~ 282 (844)
++|++++|++...-....+..+++|++|++.+|.+...- -...+..+++|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777777776653222244566677777777777665321 12245666777766543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=1.5e-10 Score=109.13 Aligned_cols=127 Identities=36% Similarity=0.383 Sum_probs=40.3
Q ss_pred CCCCCEEeCCCCCCCCCchhhhc-CCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 038149 124 LKQLKILNIGYNSFNESLVPLLT-SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNL 202 (844)
Q Consensus 124 l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 202 (844)
..+++.|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+. +. .+..+++|++|++++|+|+ .+.......+++|
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~--l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK--LE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----T--T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc--cc--CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 33445555555544332 1233 34555555555555533 22 4556666667777777666 3332111346677
Q ss_pred cEEEccCCcCCcC-CcccccCCCCCCEEECcCCCCCCCCC---hhhhcCCCCCCeEecCC
Q 038149 203 VELNINENEFDGL-LPQCLSNLTYLRVLDLSSNKLSGNLP---LSVIANLTSLEYLSLFD 258 (844)
Q Consensus 203 ~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p---~~~l~~l~~L~~L~L~~ 258 (844)
++|++++|+|... .-..+..+++|++|++.+|.++ ..+ ...+..+|+|+.||-..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEE
Confidence 7777777766543 1244566777777777777766 222 13456778888887543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6e-11 Score=121.78 Aligned_cols=234 Identities=21% Similarity=0.177 Sum_probs=146.2
Q ss_pred EEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCch-hhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCE
Q 038149 101 VLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLV-PLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEV 179 (844)
Q Consensus 101 ~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 179 (844)
.+.+++-.+..+.-++....=+++++|+.+.|.++.+..... .....|++++.|||++|-+..-..-......+++|+.
T Consensus 97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~ 176 (505)
T KOG3207|consen 97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLEN 176 (505)
T ss_pred HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchh
Confidence 334444444443332222333567778888887776643222 4566788888888888876431111233456788888
Q ss_pred EEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCc-ccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCC
Q 038149 180 LDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP-QCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFD 258 (844)
Q Consensus 180 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~ 258 (844)
|+|+.|++........-..+++|+.|.|+.|.++...- .....+|+|+.|+|..|... .+-.....-+..|++|||++
T Consensus 177 LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 177 LNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSN 255 (505)
T ss_pred cccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccC
Confidence 88888877643333333456788888888888774322 22346788888888888532 11113345567788888888
Q ss_pred CcccCccChhhhcCCCCCCEEEccCccccCCCCCC-------CCCCcccEEEccCCCCCcC-cChhhhcCCCCCEEEccC
Q 038149 259 NHFQESFPLSVLANHSRLEVFQLSRLQVETENFPW-------LPKFQLKVLNLRHCNISGT-IPRFLQYQYDFRYIDLSD 330 (844)
Q Consensus 259 n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-------~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~ 330 (844)
|++...-.....+.++.|+.|.++.+.+......- ...++|+.|++..|++..- .-..+..+.+|+.|.+..
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 87765443345777888888888888777654432 2356899999999988431 223456677888888888
Q ss_pred Ccccc
Q 038149 331 NNLVD 335 (844)
Q Consensus 331 n~l~~ 335 (844)
|.+..
T Consensus 336 n~ln~ 340 (505)
T KOG3207|consen 336 NYLNK 340 (505)
T ss_pred ccccc
Confidence 88764
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=2.3e-11 Score=121.55 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=44.6
Q ss_pred CceEEEeeCcCcccCCCCCCCCCcccCCCCccCCCCCcEEeCCCCCCCCCCcccc-------ccccCCCCCCCEEeCCCC
Q 038149 63 GRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKA-------YNTSRSLKQLKILNIGYN 135 (844)
Q Consensus 63 ~~V~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-------~~~l~~l~~L~~L~Ls~n 135 (844)
..+++|+|+|+.+.. ... ..-...+.+.+.|+..++|+- ++|....+. ..++..+++|++||||.|
T Consensus 30 ~s~~~l~lsgnt~G~-EAa-----~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGT-EAA-----RAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred CceEEEeccCCchhH-HHH-----HHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 456667776665410 000 011223455566666666543 333332221 134445556666666666
Q ss_pred CCCCCchh----hhcCCCCCCEEECCCCCC
Q 038149 136 SFNESLVP----LLTSLTSLTSLFLQGNSF 161 (844)
Q Consensus 136 ~l~~~~~~----~l~~l~~L~~L~Ls~n~l 161 (844)
.+....+. .+..++.|++|.|.+|.+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 65433332 234556666666666655
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=4.5e-11 Score=119.49 Aligned_cols=187 Identities=20% Similarity=0.251 Sum_probs=100.9
Q ss_pred cCCCCcEEeCcCcccCCcCCcc----ccCCCCcCEecCCCCcCcccc-------------cccccCCCCCcEEEccCccc
Q 038149 441 SCVSLEFMNLSHNYFDGQIFPK----YMNLAKLVFLFLNDNQFTGRL-------------EVGLLNASSLYVLDVSNNML 503 (844)
Q Consensus 441 ~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~ls~n~l 503 (844)
.+++|++++||+|-+.-..++. +..+..|++|.|.+|.+...- .......+.|+++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3445555555555544332222 234555666666666554111 11123356788888888877
Q ss_pred CcC----CChhhhcCCCCCEEeCCCCccccc----CCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccc
Q 038149 504 SGQ----LPRWIGKFSNLDVLLMSRNSFEGD----VSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLS 575 (844)
Q Consensus 504 ~~~----~p~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 575 (844)
... +...|...+.|+.+.++.|.+... +...+..++.|++|||.+|-++.....
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~------------------ 231 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV------------------ 231 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH------------------
Confidence 632 223456677888888888876422 223466777777777777766532211
Q ss_pred cccCccccCCCCCCEEECCCCcCCcccchhh-----hCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEcCCCcc
Q 038149 576 GTIPNALLQSSQLTTLDLRDNEFSGNIAHLI-----NEDSNLRALLLRGNNLQGN----IPEPLCHLRKLAIVDISYNTL 646 (844)
Q Consensus 576 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l-----~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l 646 (844)
.+...+..+++|++|++++|.+...-...+ ...++|++|.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 232 -~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 232 -ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 122334444555555555555543222222 2345666666666666521 223344466677777777776
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.6e-10 Score=118.77 Aligned_cols=211 Identities=21% Similarity=0.175 Sum_probs=105.7
Q ss_pred ccEEEccCCCCCcCcC-hhhhcCCCCCEEEccCCcccccCch-hHhhcCCCCcEEEcCCCcccccccCC--CCCCCCCEE
Q 038149 299 LKVLNLRHCNISGTIP-RFLQYQYDFRYIDLSDNNLVDTFPT-WLLQNNTKLEIMFLFNNFLTGNLQLP--NSKRNLPHL 374 (844)
Q Consensus 299 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~L~~L 374 (844)
|+++.|+++.+..... .....+++++.|||+.|-+....+. .+...+++|+.|+++.|.+....... ..++.|+.|
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL 202 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence 4444555554432211 3455677777777777766543221 34456666776666666665332111 145666677
Q ss_pred EccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCCh-hhhhcCCCCcEEeCcCc
Q 038149 375 VISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPK-HFLTSCVSLEFMNLSHN 453 (844)
Q Consensus 375 ~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~Ls~n 453 (844)
.++.|.++..--..+...+|+|+.|++..|.....-......+..|+.|||++|++.. .+. .....++.|+.|+++.+
T Consensus 203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhcccc
Confidence 7777766543333333446777777777764222222233444556666666666542 221 11234455555555555
Q ss_pred ccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcC-CChhhhcCCCCCEEeCCCCccc
Q 038149 454 YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQ-LPRWIGKFSNLDVLLMSRNSFE 528 (844)
Q Consensus 454 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~ 528 (844)
.+...-.+.. ..-.-...+++|++|++..|++... .-..+..+++|+.|.+..|.++
T Consensus 282 gi~si~~~d~------------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 282 GIASIAEPDV------------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred CcchhcCCCc------------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 4443211110 0000023346666666666666421 1123444556666666666665
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=9.2e-11 Score=114.20 Aligned_cols=203 Identities=25% Similarity=0.231 Sum_probs=109.0
Q ss_pred ccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCccccc
Q 038149 93 FVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLV 172 (844)
Q Consensus 93 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 172 (844)
+..|++|..+.+|.+.-..+.. ....-+.|+++...+..+... +.+--.+.+....-+.-....|... ..+-
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~~-----~~~~kptl~t~~v~~s~~~~~--~~l~pe~~~~D~~~~E~~t~~G~~~-~~~d 281 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIVD-----IELLKPTLQTICVHNTTIQDV--PSLLPETILADPSGSEPSTSNGSAL-VSAD 281 (490)
T ss_pred hHHhhhhheeeeeccchhheec-----eeecCchhheeeeeccccccc--ccccchhhhcCccCCCCCccCCceE-Eecc
Confidence 4456677777777765333221 112235677777766544321 1111111111111111111122111 1222
Q ss_pred CCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCC
Q 038149 173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLE 252 (844)
Q Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~ 252 (844)
.-+.|+.+|||+|.|+ .+. +.+.-.+.++.|++++|.+..+ ..+..+++|+.|||++|.++ .+. ++-.++-+.+
T Consensus 282 TWq~LtelDLS~N~I~-~iD-ESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~-Gwh~KLGNIK 355 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QID-ESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECV-GWHLKLGNIK 355 (490)
T ss_pred hHhhhhhccccccchh-hhh-hhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhh-hhHhhhcCEe
Confidence 3345666777777665 343 3355566777777777776643 23666677777777777666 444 5555666677
Q ss_pred eEecCCCcccCccChhhhcCCCCCCEEEccCccccCCC--CCCCCCCcccEEEccCCCCCcC
Q 038149 253 YLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETEN--FPWLPKFQLKVLNLRHCNISGT 312 (844)
Q Consensus 253 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~L~~n~l~~~ 312 (844)
.|.|+.|.+.. .+.++++-+|..|++++|+|.... .....++-|+.+.|.+|.+.+.
T Consensus 356 tL~La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeehhhhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 77777776542 123556666777777777766432 2334455677888888887754
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.96 E-value=6.6e-10 Score=78.39 Aligned_cols=43 Identities=28% Similarity=0.639 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhhhcccccccccccccccCCCcCCCCCCCCCCCceEec
Q 038149 12 LDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCN 59 (844)
Q Consensus 12 ~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~C~w~gv~c~ 59 (844)
+++|++||++||+++.. ++. +.+.+|+.....+||+|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~---~~~--~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNN---DPS--GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT----SC---CCCTT--TT--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhccc---ccC--cccccCCCcCCCCCeeeccEEeC
Confidence 36899999999999975 243 78999986423699999999996
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=6.3e-10 Score=123.18 Aligned_cols=85 Identities=21% Similarity=0.234 Sum_probs=51.1
Q ss_pred ceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccccc---CCcc-ccCCCCCCEE
Q 038149 708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQ---IPPE-LGELSFLAIF 783 (844)
Q Consensus 708 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~---ip~~-l~~l~~L~~L 783 (844)
|+.+++++|++. .++..+..+..+..|++++|++... ..+.....+..+..+.|.+... .... ......+..+
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 566677777766 4445566667777777777777632 1244555666666666665521 1221 4556667777
Q ss_pred EccCCcccccCC
Q 038149 784 NVSYNNLSGTVP 795 (844)
Q Consensus 784 ~ls~N~l~g~ip 795 (844)
.+.+|......+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 777777766554
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=4.3e-09 Score=124.17 Aligned_cols=130 Identities=30% Similarity=0.328 Sum_probs=74.0
Q ss_pred CCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCC--CCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccC
Q 038149 96 FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNS--FNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVN 173 (844)
Q Consensus 96 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 173 (844)
....|...+-+|.+..+.. -..+++|++|-+..|. +.......|..++.|++|||++|.- -+.+| ..++.
T Consensus 522 ~~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP-~~I~~ 593 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLP-SSIGE 593 (889)
T ss_pred hhheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCC-hHHhh
Confidence 3455566665555544332 1233456666666664 4444555566666666666666542 23344 55666
Q ss_pred CCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCC
Q 038149 174 LRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNK 235 (844)
Q Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 235 (844)
|-+||+|++++..+. .+| ..+.+++.|.+|++..+.-...+|..+..+++|++|.+....
T Consensus 594 Li~LryL~L~~t~I~-~LP-~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLP-SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhcccccCCCcc-ccc-hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 666666666666665 444 346666666666666665444445555556666666665443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=5.9e-09 Score=80.64 Aligned_cols=59 Identities=41% Similarity=0.541 Sum_probs=30.7
Q ss_pred ccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCc
Q 038149 731 EIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNN 789 (844)
Q Consensus 731 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~ 789 (844)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554333445555555555555555554444555555555555555554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=7.3e-09 Score=80.13 Aligned_cols=61 Identities=41% Similarity=0.524 Sum_probs=56.1
Q ss_pred ccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcc
Q 038149 706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL 766 (844)
Q Consensus 706 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 766 (844)
++|++|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3688999999999966567889999999999999999988889999999999999999986
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=1.6e-09 Score=120.06 Aligned_cols=245 Identities=28% Similarity=0.305 Sum_probs=112.7
Q ss_pred CCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCC
Q 038149 95 PFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNL 174 (844)
Q Consensus 95 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 174 (844)
.+..++.+++..|.+..+. ..+..+++|+.|++..|.+..+.. .+..+++|++|++++|.|+. + ..+..+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~--i--~~l~~l 139 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK--L--EGLSTL 139 (414)
T ss_pred HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhhccc-chhhhhcchheecccccccc--c--cchhhc
Confidence 3444445555555444311 234455555555555555533211 14445555555555555532 1 234444
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCc-ccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCe
Q 038149 175 RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP-QCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEY 253 (844)
Q Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~ 253 (844)
+.|+.|++++|.++ .+ ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+. .+. .+..+..+..
T Consensus 140 ~~L~~L~l~~N~i~-~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~--~~~~~~~l~~ 212 (414)
T KOG0531|consen 140 TLLKELNLSGNLIS-DI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIE--GLDLLKKLVL 212 (414)
T ss_pred cchhhheeccCcch-hc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-ccc--chHHHHHHHH
Confidence 44555555555554 11 223344555555555555443322 1 234444445555554443 221 2222333333
Q ss_pred EecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCC-CCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCc
Q 038149 254 LSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPW-LPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNN 332 (844)
Q Consensus 254 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 332 (844)
+++..|.++ ...... ....+|+.+++++|++.. .+..+..+..+..+++.+|+
T Consensus 213 ~~l~~n~i~-------------------------~~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 213 LSLLDNKIS-------------------------KLEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred hhcccccce-------------------------eccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcc
Confidence 344444333 221111 111136666777776653 22455566677777777776
Q ss_pred ccccCchhHhhcCCCCcEEEcCCCccccccc-----CCCCCCCCCEEEccCCcccccC
Q 038149 333 LVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ-----LPNSKRNLPHLVISNNSFIGKL 385 (844)
Q Consensus 333 l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~l~~n~l~~~~ 385 (844)
+...-.. ...+.+..+....+.+..... .....+.++...+..+......
T Consensus 267 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 267 ISNLEGL---ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred ccccccc---cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 6533221 133444445555555442211 1235567777777777665433
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=7.4e-08 Score=113.90 Aligned_cols=273 Identities=23% Similarity=0.191 Sum_probs=151.6
Q ss_pred CCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcc-cccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEe
Q 038149 346 TKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSF-IGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLD 424 (844)
Q Consensus 346 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l-~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 424 (844)
...+.+.+-+|.+.... ....++.|++|-+..|.. ...++..++..++.|+.||+++|.--+.+|..++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~-~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA-GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhcc-CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 44555555555554332 122445677777777752 3466666666788888888888766667888888888888888
Q ss_pred ccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcC--cccccccccCCCCCcEEEccCcc
Q 038149 425 LSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQF--TGRLEVGLLNASSLYVLDVSNNM 502 (844)
Q Consensus 425 Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~ls~n~ 502 (844)
+++..+. .+|..+ ..+..|.+|++..+.-...++.....+++|++|.+..-.. +...-..+..+..|+.+......
T Consensus 602 L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 8888885 677775 6778888888887765555556666688888887765432 22222334455556555554333
Q ss_pred cCcCCChhhhcCCCCC----EEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC------C-CCCCcEEECCC
Q 038149 503 LSGQLPRWIGKFSNLD----VLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS------N-HSSLRYLFPHN 571 (844)
Q Consensus 503 l~~~~p~~l~~l~~L~----~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~------~-~~~L~~L~l~~ 571 (844)
. .+-..+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+........ . .+++..+...+
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 2 1111122222222 2222222222 334456667777777777776643221110 0 11222222222
Q ss_pred CccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc
Q 038149 572 NSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN 625 (844)
Q Consensus 572 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 625 (844)
+..- ..+.+....++|+.|.+..+.....+......+..++.+.+..+.+.+.
T Consensus 757 ~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 757 CHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred cccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 2211 1222233446677777776666555555555555555555555555543
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=4.4e-09 Score=114.35 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.8
Q ss_pred CCCccCCCCCcEEeCCCCCCCC
Q 038149 90 MSLFVPFQELHVLDLSDNRFEG 111 (844)
Q Consensus 90 ~~~~~~l~~L~~L~Ls~n~i~~ 111 (844)
+-.+..|+.||+|.|.++.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred CceeccccceeeEEecCcchhh
Confidence 3457889999999999988764
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.38 E-value=1.6e-08 Score=87.54 Aligned_cols=64 Identities=30% Similarity=0.435 Sum_probs=33.5
Q ss_pred cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCcc
Q 038149 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE 773 (844)
Q Consensus 707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 773 (844)
.++.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|.-+..|.+|-.||.-.|.+- +||..
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 3445555555555 55555555555555555555555 44444555555555555555544 34433
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.3e-08 Score=99.67 Aligned_cols=88 Identities=20% Similarity=0.085 Sum_probs=45.0
Q ss_pred CCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCC
Q 038149 98 ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNL 177 (844)
Q Consensus 98 ~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 177 (844)
.|++||||+..|+...- ...++.|.+|+.|.|.++++.+.+...++.-.+|+.|+|+.+.=-+..-....+.+|+.|
T Consensus 186 Rlq~lDLS~s~it~stl---~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTL---HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHH---HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 46666666655543211 123455666666666666666666666666666666666655311100001223455555
Q ss_pred CEEEccCCcCC
Q 038149 178 EVLDLSGNRIT 188 (844)
Q Consensus 178 ~~L~Ls~n~l~ 188 (844)
..|+|+.|.++
T Consensus 263 ~~LNlsWc~l~ 273 (419)
T KOG2120|consen 263 DELNLSWCFLF 273 (419)
T ss_pred hhcCchHhhcc
Confidence 55555555444
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.2e-08 Score=96.10 Aligned_cols=131 Identities=20% Similarity=0.168 Sum_probs=60.6
Q ss_pred ccEEEccCCCCCcCcChhhhcCCCCCEEEccCC-cccccCchhHhhcCCCCcEEEcCCCccccccc---CCCCCCCCCEE
Q 038149 299 LKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDN-NLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ---LPNSKRNLPHL 374 (844)
Q Consensus 299 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~L~~L 374 (844)
|+.|.+.++++...+...+..-..|+.|+++.+ .++......++.+++.|..|+++.|.+..... +..--++|+.|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 333444444444444444555555555555543 23333334444555556666655555543210 11133555666
Q ss_pred EccCCccc--ccCChhhhcCCCCccEEEccCCc-CCCCCCccccccccCcEEeccCCc
Q 038149 375 VISNNSFI--GKLPENFGLILPELVYLDMSQNS-FEGSIPPSMGYMERLLFLDLSSNN 429 (844)
Q Consensus 375 ~l~~n~l~--~~~p~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 429 (844)
+++++.-. ..--..+...+|+|.+|||++|. ++......|..++.|++|.++.|.
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 66655211 00011122335666666666653 332223344455556666666655
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=1.7e-08 Score=109.86 Aligned_cols=128 Identities=28% Similarity=0.297 Sum_probs=98.5
Q ss_pred CCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEec
Q 038149 394 PELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLF 473 (844)
Q Consensus 394 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 473 (844)
..|...+.++|.+. .+..++.-++.|+.|+|++|+++. +. .+..|+.|++|||++|.+....-.....+. |+.|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH--HHHhcccccccccccchhccccccchhhhh-heeee
Confidence 46778888899887 667788888899999999999874 33 467899999999999998765433444454 99999
Q ss_pred CCCCcCcccccccccCCCCCcEEEccCcccCcCCC-hhhhcCCCCCEEeCCCCccc
Q 038149 474 LNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLP-RWIGKFSNLDVLLMSRNSFE 528 (844)
Q Consensus 474 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~ 528 (844)
+++|.++. -.++.++.+|+.||+++|-+.+.-. ..++.+..|+.|+|.+|.+-
T Consensus 239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99998873 3457788999999999998775211 23567788899999999874
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=2.3e-07 Score=90.94 Aligned_cols=112 Identities=25% Similarity=0.221 Sum_probs=64.9
Q ss_pred CCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCc-ccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCE
Q 038149 150 SLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLI-MQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRV 228 (844)
Q Consensus 150 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 228 (844)
.++.|.+.++.|.+...-...-..++.++.+||.+|.|+..-. ...+.+++.|++|+|+.|.+...+...=....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4445555555553311111112356777788888887763211 122457788888888888776543221134567788
Q ss_pred EECcCCCCCCCCChhhhcCCCCCCeEecCCCcc
Q 038149 229 LDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHF 261 (844)
Q Consensus 229 L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l 261 (844)
|-|.+..+...-....+..++.+++|+++.|.+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 877777665333334556677777777777744
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=2.4e-07 Score=80.42 Aligned_cols=89 Identities=25% Similarity=0.382 Sum_probs=52.5
Q ss_pred CcEEECCCCccccccCcccc---CCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 038149 564 LRYLFPHNNSLSGTIPNALL---QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVD 640 (844)
Q Consensus 564 L~~L~l~~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 640 (844)
+..++|++|++- .+++... ....|+..+|++|.+....+..-...+.++.|++++|+++ .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 344555555543 3333332 3345556677777777443333344556777777777777 6666677777777777
Q ss_pred cCCCccccCCCchhh
Q 038149 641 ISYNTLNGPIPSCFT 655 (844)
Q Consensus 641 Ls~N~l~~~~p~~~~ 655 (844)
++.|++. ..|+.+.
T Consensus 107 l~~N~l~-~~p~vi~ 120 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIA 120 (177)
T ss_pred cccCccc-cchHHHH
Confidence 7777765 4444443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=6.3e-07 Score=86.83 Aligned_cols=92 Identities=22% Similarity=0.280 Sum_probs=42.9
Q ss_pred CCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCC---CCCch-------hhhcCCCCCCEEECCCCCCCCCC
Q 038149 96 FQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSF---NESLV-------PLLTSLTSLTSLFLQGNSFSEGF 165 (844)
Q Consensus 96 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~~-------~~l~~l~~L~~L~Ls~n~l~~~~ 165 (844)
+..+..+|||+|.|...........+.+-++|+..+++.-.. .+.++ +++-.|++|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455566666666655443333344555556666666654211 11222 23344555555555555553222
Q ss_pred cC--cccccCCCCCCEEEccCCcC
Q 038149 166 KH--NKGLVNLRNLEVLDLSGNRI 187 (844)
Q Consensus 166 ~~--~~~l~~l~~L~~L~Ls~n~l 187 (844)
++ ...++.-+.|++|.+++|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC
Confidence 21 12233444455555555443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=2.8e-06 Score=83.53 Aligned_cols=196 Identities=20% Similarity=0.164 Sum_probs=89.5
Q ss_pred cCCCCcEEeCcCcccCCc--CCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCc-CCChhhhcCCCC
Q 038149 441 SCVSLEFMNLSHNYFDGQ--IFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSG-QLPRWIGKFSNL 517 (844)
Q Consensus 441 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L 517 (844)
.++.++.+||.+|.|++. +...+.++|.|++|+++.|.+...+...-....+|++|-+.+..+.- ..-..+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 344445555555554432 22223445555555555555543222111223455555555544431 122234455566
Q ss_pred CEEeCCCCcccccC--CccccCC-CCCCEEecCC---------CcCcccCCCCCCCCCCcEEECCCCccccc-cCccccC
Q 038149 518 DVLLMSRNSFEGDV--SVQLSNL-EVARILDISE---------NKLYGPLEFSSNHSSLRYLFPHNNSLSGT-IPNALLQ 584 (844)
Q Consensus 518 ~~L~ls~n~l~~~~--~~~l~~l-~~L~~L~ls~---------n~l~~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~l~~ 584 (844)
+.|.++.|.+.... ....... +.+++|..-. |++.. ..+++..+.+..|.+... -.+.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r------~Fpnv~sv~v~e~PlK~~s~ek~se~ 222 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR------IFPNVNSVFVCEGPLKTESSEKGSEP 222 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh------hcccchheeeecCcccchhhcccCCC
Confidence 66666666322100 0000000 1122222222 22211 234455555555554322 1233445
Q ss_pred CCCCCEEECCCCcCCccc-chhhhCCCCCCEEEccCCcccccCCc------ccCCCCCCCEEEcC
Q 038149 585 SSQLTTLDLRDNEFSGNI-AHLINEDSNLRALLLRGNNLQGNIPE------PLCHLRKLAIVDIS 642 (844)
Q Consensus 585 l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~Ls 642 (844)
++.+..|+|+.|+|..-- -+.+..++.|..|.+++|.+...+.. -++.+++++.|+=+
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 556667777777776322 24566777777777777776533221 24566666666533
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.91 E-value=5.3e-07 Score=92.80 Aligned_cols=135 Identities=18% Similarity=0.132 Sum_probs=60.8
Q ss_pred cCCCCCEEEccCCcccc-cCchhHhhcCCCCcEEEcCCCcccccc---cCCCCCCCCCEEEccCCcccccC-ChhhhcCC
Q 038149 319 YQYDFRYIDLSDNNLVD-TFPTWLLQNNTKLEIMFLFNNFLTGNL---QLPNSKRNLPHLVISNNSFIGKL-PENFGLIL 393 (844)
Q Consensus 319 ~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~~l 393 (844)
.+..|+.++.+++...+ ..-..+.++..+|+.+.+..++.-... .+...++.|+.+++.++...... -......+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 35567777777654322 222334456666666666666532211 11224555555555555432111 11122235
Q ss_pred CCccEEEccCCcC-CCC----CCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCc
Q 038149 394 PELVYLDMSQNSF-EGS----IPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN 453 (844)
Q Consensus 394 ~~L~~L~Ls~n~l-~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 453 (844)
+.|+.+.+++|.. ++. ....-..+..|..+.++++..+.+-.......+++|+.+++-++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 5566666665532 111 01111234445555555555433322233344444444444443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=4.4e-05 Score=81.20 Aligned_cols=73 Identities=14% Similarity=0.259 Sum_probs=40.8
Q ss_pred CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCC-cccccCCcccCCCCCCCE
Q 038149 560 NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN-NLQGNIPEPLCHLRKLAI 638 (844)
Q Consensus 560 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~ 638 (844)
.+..++.|++++|.++ .+|. -..+|++|+++++.--..+|+.+. ++|++|++++| .+. .+|. .|+.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence 3566777777777666 4452 123577777776443335555442 46777777776 333 3443 3555
Q ss_pred EEcCCCc
Q 038149 639 VDISYNT 645 (844)
Q Consensus 639 L~Ls~N~ 645 (844)
|+++.+.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 5555544
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.3e-05 Score=56.60 Aligned_cols=35 Identities=37% Similarity=0.618 Sum_probs=13.3
Q ss_pred cCeEeccCcccccccCcccccccCCCEEeCCCCccc
Q 038149 732 IHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767 (844)
Q Consensus 732 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 767 (844)
|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444 23333444444444444444433
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=2.1e-05 Score=55.50 Aligned_cols=36 Identities=47% Similarity=0.721 Sum_probs=32.3
Q ss_pred cceEEEeecCcccCCCCchhhhccccCeEeccCcccc
Q 038149 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLS 743 (844)
Q Consensus 707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 743 (844)
+|++|++++|+++ .+|.++++|++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 6899999999999 78888999999999999999998
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.2e-05 Score=92.97 Aligned_cols=149 Identities=30% Similarity=0.365 Sum_probs=75.3
Q ss_pred CCCCEEeCCCCCC-CCCchhhhc-CCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 038149 125 KQLKILNIGYNSF-NESLVPLLT-SLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNL 202 (844)
Q Consensus 125 ~~L~~L~Ls~n~l-~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 202 (844)
.+|++||+++... ...-|..++ -+|+|+.|.+++-.+....+. ....++++|+.||+|+..++ .+ .+++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNIS-NL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCCCcc-Cc--HHHhccccH
Confidence 3566666666532 222333333 356666666666555332211 23455666666666666665 22 456666666
Q ss_pred cEEEccCCcCCc-CCcccccCCCCCCEEECcCCCCCCCCC---h---hhhcCCCCCCeEecCCCcccCccChhhhcCCCC
Q 038149 203 VELNINENEFDG-LLPQCLSNLTYLRVLDLSSNKLSGNLP---L---SVIANLTSLEYLSLFDNHFQESFPLSVLANHSR 275 (844)
Q Consensus 203 ~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p---~---~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 275 (844)
++|.+.+=.+.. ..-..+.++++|++||+|..... ..+ . +.-..+|+|+.||.++..+.+.+-...+...++
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 666665544432 11223455666666666665443 111 0 111236666666666665554433333444444
Q ss_pred CCE
Q 038149 276 LEV 278 (844)
Q Consensus 276 L~~ 278 (844)
|+.
T Consensus 277 L~~ 279 (699)
T KOG3665|consen 277 LQQ 279 (699)
T ss_pred Hhh
Confidence 443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=8.6e-06 Score=94.17 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=25.3
Q ss_pred hcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcC
Q 038149 318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLF 354 (844)
Q Consensus 318 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~ 354 (844)
..+++|+.||.|++.+.+.+-+.+...-++|+.+.+-
T Consensus 247 ~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred ccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 3467888888888887777666666666666654443
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.58 E-value=4.4e-05 Score=74.40 Aligned_cols=217 Identities=20% Similarity=0.164 Sum_probs=142.9
Q ss_pred CCceEEEeeCcCcccCCCCCCCCCcccCCCCccCCCCCcEEeCCCCCCCCCCcccc-------ccccCCCCCCCEEeCCC
Q 038149 62 TGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKA-------YNTSRSLKQLKILNIGY 134 (844)
Q Consensus 62 ~~~V~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-------~~~l~~l~~L~~L~Ls~ 134 (844)
...+++++|+|+.+. .... .--...+++-++|++.++++- ++|...++. ..++.+|++|+..+||.
T Consensus 29 ~d~~~evdLSGNtig--tEA~----e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 29 MDELVEVDLSGNTIG--TEAM----EELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred hcceeEEeccCCccc--HHHH----HHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 346889999998761 1100 000124566788888888864 445444432 25677899999999999
Q ss_pred CCCCCCchh----hhcCCCCCCEEECCCCCCCCCCcCcc-------------cccCCCCCCEEEccCCcCCCCCc----c
Q 038149 135 NSFNESLVP----LLTSLTSLTSLFLQGNSFSEGFKHNK-------------GLVNLRNLEVLDLSGNRITGSLI----M 193 (844)
Q Consensus 135 n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~-------------~l~~l~~L~~L~Ls~n~l~~~~~----~ 193 (844)
|.|....|+ .++.-+.|++|.+++|.+. .+... ...+-+.|++.....|++.. -+ .
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG--p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a 178 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLG--PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSA 178 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCCCC--ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHH
Confidence 988655554 4677899999999999863 22211 22455789999999999862 22 1
Q ss_pred cccCCCCCCcEEEccCCcCCcCC-----cccccCCCCCCEEECcCCCCCCCCC----hhhhcCCCCCCeEecCCCcccCc
Q 038149 194 QGICDLKNLVELNINENEFDGLL-----PQCLSNLTYLRVLDLSSNKLSGNLP----LSVIANLTSLEYLSLFDNHFQES 264 (844)
Q Consensus 194 ~~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~~p----~~~l~~l~~L~~L~L~~n~l~~~ 264 (844)
..+..-.+|+++.+..|.|.-.. -..+..+.+|+.||+..|.++- .. ...+...+.|+.|.+.+|-++..
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~-~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL-EGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh-hhHHHHHHHhcccchhhhccccchhhccc
Confidence 22334468999999999775321 1123467899999999998872 21 13455677799999999987753
Q ss_pred cChhhhc-----CCCCCCEEEccCccccCC
Q 038149 265 FPLSVLA-----NHSRLEVFQLSRLQVETE 289 (844)
Q Consensus 265 ~~~~~l~-----~l~~L~~L~l~~~~i~~~ 289 (844)
-....+. ..++|..|...+|.+...
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 3333222 346777888887765543
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.57 E-value=5.6e-06 Score=85.46 Aligned_cols=38 Identities=21% Similarity=0.090 Sum_probs=21.1
Q ss_pred cCCCCcEEEcCCCccccccc--CCCCCCCCCEEEccCCcc
Q 038149 344 NNTKLEIMFLFNNFLTGNLQ--LPNSKRNLPHLVISNNSF 381 (844)
Q Consensus 344 ~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l 381 (844)
.+..|+.+.++++..+.... ....+++|+.+++.+++-
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 34556666666665543221 223566777777766653
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00035 Score=74.45 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=50.9
Q ss_pred ccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCC-cCCcccchhhhCCCCCC
Q 038149 535 LSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDN-EFSGNIAHLINEDSNLR 613 (844)
Q Consensus 535 l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~ 613 (844)
+..+.+++.|++++|.+... |. -+.+|+.|.+++|.-...+|+.+ ..+|+.|++++| .+. .+| .+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccc
Confidence 44567888888888876543 32 34568888888765444666655 257888888888 443 444 3577
Q ss_pred EEEccCCcc
Q 038149 614 ALLLRGNNL 622 (844)
Q Consensus 614 ~L~L~~N~l 622 (844)
.|+++++..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 777776654
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=0.0002 Score=67.07 Aligned_cols=105 Identities=26% Similarity=0.371 Sum_probs=55.2
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEe
Q 038149 176 NLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLS 255 (844)
Q Consensus 176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~ 255 (844)
+...+||++|.+. .+ +.|..++.|.+|.|.+|+|+.+.|.--.-+++|+.|.|.+|++..--....+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4455666666654 22 24556666666666666666554443334556666666666655211122355566666666
Q ss_pred cCCCcccCcc--ChhhhcCCCCCCEEEccC
Q 038149 256 LFDNHFQESF--PLSVLANHSRLEVFQLSR 283 (844)
Q Consensus 256 L~~n~l~~~~--~~~~l~~l~~L~~L~l~~ 283 (844)
+-+|.....- -...+..+++|+.||..+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666554211 111244455555555544
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.45 E-value=0.00024 Score=64.59 Aligned_cols=103 Identities=19% Similarity=0.304 Sum_probs=38.3
Q ss_pred chhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccc
Q 038149 141 LVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCL 220 (844)
Q Consensus 141 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 220 (844)
....|.++++|+.+.+..+ +.. ++...|.++..|+.+.+.. .+. .++...|..+++|+.+++..+ +.......|
T Consensus 27 ~~~~F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f 100 (129)
T PF13306_consen 27 GENAFSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSF 100 (129)
T ss_dssp -TTTTTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BEEHTTTT
T ss_pred Chhhccccccccccccccc-ccc--cceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-ccEEchhhh
Confidence 3334444444444444443 212 3334455555556665544 222 233344555666666666544 443444555
Q ss_pred cCCCCCCEEECcCCCCCCCCChhhhcCCCCCC
Q 038149 221 SNLTYLRVLDLSSNKLSGNLPLSVIANLTSLE 252 (844)
Q Consensus 221 ~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~ 252 (844)
.++ +|+.+.+.. .+. .++...|.++++|+
T Consensus 101 ~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 101 SNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp TT--T--EEE-TT-B-S-S----GGG------
T ss_pred cCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 555 666666654 333 44445666665553
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.43 E-value=0.00029 Score=63.99 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=31.7
Q ss_pred cCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhh
Q 038149 166 KHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVI 245 (844)
Q Consensus 166 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l 245 (844)
+....|.++++|+.+++..+ +. .+....|.++++|+.+.+.. .+.......|..+++|+.+++..+ +. .++...|
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f 100 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSF 100 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTT
T ss_pred eChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhh
Confidence 33344455555555555443 32 33334444554455555543 222233334444555555555433 32 3333444
Q ss_pred cCCCCCCeEecC
Q 038149 246 ANLTSLEYLSLF 257 (844)
Q Consensus 246 ~~l~~L~~L~L~ 257 (844)
.++ +|+.+.+.
T Consensus 101 ~~~-~l~~i~~~ 111 (129)
T PF13306_consen 101 SNC-NLKEINIP 111 (129)
T ss_dssp TT--T--EEE-T
T ss_pred cCC-CceEEEEC
Confidence 444 45555444
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00029 Score=66.06 Aligned_cols=106 Identities=25% Similarity=0.257 Sum_probs=55.1
Q ss_pred CCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCC
Q 038149 98 ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNL 177 (844)
Q Consensus 98 ~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 177 (844)
....+||++|.+... ..|..++.|.+|.|++|+|+.+.|.--.-+++|+.|.|.+|+|..
T Consensus 43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-------------- 102 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-------------- 102 (233)
T ss_pred ccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh--------------
Confidence 344566666665544 235556666666666666655555444444555555555555422
Q ss_pred CEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCC---cccccCCCCCCEEECcCCC
Q 038149 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL---PQCLSNLTYLRVLDLSSNK 235 (844)
Q Consensus 178 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~Ls~n~ 235 (844)
--..+.+..|++|++|.+-+|.++..- --.+.++++|++||+..-.
T Consensus 103 ------------l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 103 ------------LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ------------hhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 111122444555555555555443221 1234566777777766543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00048 Score=67.54 Aligned_cols=87 Identities=28% Similarity=0.347 Sum_probs=48.5
Q ss_pred CCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCC--CCCCCchhhhcCCCCCCEEECCCCCCCCCCcCccccc
Q 038149 95 PFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYN--SFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLV 172 (844)
Q Consensus 95 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 172 (844)
.+..|+.|++.+..++.. ..+-.+++|++|.+|.| ++.+..+.....+++|++|++++|++.. .-....+.
T Consensus 41 ~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~ 113 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLK 113 (260)
T ss_pred cccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhh
Confidence 344555666665555543 33556777777777777 4544444444555777777777776631 01112344
Q ss_pred CCCCCCEEEccCCcCC
Q 038149 173 NLRNLEVLDLSGNRIT 188 (844)
Q Consensus 173 ~l~~L~~L~Ls~n~l~ 188 (844)
.+.+|..|++.+|..+
T Consensus 114 ~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVT 129 (260)
T ss_pred hhcchhhhhcccCCcc
Confidence 5555555555555544
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.00058 Score=67.01 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=30.9
Q ss_pred chhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCC--cCCCCCcccccCCCCCCcEEEccCCcCC
Q 038149 141 LVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGN--RITGSLIMQGICDLKNLVELNINENEFD 213 (844)
Q Consensus 141 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 213 (844)
+......+..|+.|++.+..+++ ...+-.+++|++|.+|.| ++.+.+..- ...+++|++|+++.|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt----~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT----LTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceee----cccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc
Confidence 33334444555555555554432 123444555555555555 333322221 223355555555555544
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.21 E-value=0.00059 Score=77.90 Aligned_cols=63 Identities=21% Similarity=0.125 Sum_probs=32.7
Q ss_pred CCCccEEEccCCc-CCCCCCccccc-cccCcEEeccCCc-CCCCCChhhhhcCCCCcEEeCcCccc
Q 038149 393 LPELVYLDMSQNS-FEGSIPPSMGY-MERLLFLDLSSNN-FSRDLPKHFLTSCVSLEFMNLSHNYF 455 (844)
Q Consensus 393 l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l 455 (844)
+++|+.|+++++. +++..-..+.. +++|+.|.+.++. ++...-..+...++.|++|+++.+..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4566666666665 44332222222 5566666655555 44333334445566666666665543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.00038 Score=68.33 Aligned_cols=82 Identities=26% Similarity=0.189 Sum_probs=35.8
Q ss_pred CCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccCh----hhhcC
Q 038149 197 CDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPL----SVLAN 272 (844)
Q Consensus 197 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~----~~l~~ 272 (844)
.+|+.|++|.|+-|.|+.. ..+..|++|+.|+|..|.|...-...-+.++++|+.|.|..|.-.|..+. ..+.-
T Consensus 38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 3444444444444444432 22444445555555554444211112334555555555555544433221 23444
Q ss_pred CCCCCEEE
Q 038149 273 HSRLEVFQ 280 (844)
Q Consensus 273 l~~L~~L~ 280 (844)
+++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 55555543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.00084 Score=65.99 Aligned_cols=85 Identities=21% Similarity=0.129 Sum_probs=51.2
Q ss_pred CCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEe
Q 038149 370 NLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMN 449 (844)
Q Consensus 370 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 449 (844)
+.+.|+..+|.+.+ -.+...++.|+.|.|+-|+|+.. ..+..|++|++|+|..|.|...-.-..+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccH---HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 44455555555442 12334577777888888877633 34677777888888777775322223455667777777
Q ss_pred CcCcccCCcC
Q 038149 450 LSHNYFDGQI 459 (844)
Q Consensus 450 Ls~n~l~~~~ 459 (844)
|..|.-.+..
T Consensus 95 L~ENPCc~~a 104 (388)
T KOG2123|consen 95 LDENPCCGEA 104 (388)
T ss_pred hccCCccccc
Confidence 7766555443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.78 E-value=0.0044 Score=36.24 Aligned_cols=18 Identities=56% Similarity=0.792 Sum_probs=7.5
Q ss_pred cCeEeccCcccccccCccc
Q 038149 732 IHALNLSNNFLSGSIPRSF 750 (844)
Q Consensus 732 L~~L~Ls~N~l~~~ip~~l 750 (844)
|++|||++|+|+ .+|.+|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344333
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.75 E-value=0.0028 Score=72.33 Aligned_cols=135 Identities=24% Similarity=0.112 Sum_probs=84.6
Q ss_pred cCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCC-CCCCC----chhhhcCCCCCCEEECCCCC-CCCCCcC
Q 038149 94 VPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYN-SFNES----LVPLLTSLTSLTSLFLQGNS-FSEGFKH 167 (844)
Q Consensus 94 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~-l~~~~~~ 167 (844)
..++.|+.|.+.++.-... .........+++|+.|+++++ ..... .......+++|+.|+++++. ++...+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l- 261 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITD--DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL- 261 (482)
T ss_pred hhCchhhHhhhcccccCCh--hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-
Confidence 3478899998887743221 111245678899999999873 22111 12345667999999999988 433111
Q ss_pred cccc-cCCCCCCEEEccCCc-CCCCCcccccCCCCCCcEEEccCCcCCcC--CcccccCCCCCCEEECc
Q 038149 168 NKGL-VNLRNLEVLDLSGNR-ITGSLIMQGICDLKNLVELNINENEFDGL--LPQCLSNLTYLRVLDLS 232 (844)
Q Consensus 168 ~~~l-~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls 232 (844)
..+ ..+++|++|.+.++. ++..-.......++.|++|+++++..... +.....++++|+.|.+.
T Consensus 262 -~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 262 -SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred -HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 222 238899999988887 56433344456788999999998865311 22223456666665543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.56 E-value=0.0046 Score=36.16 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=14.2
Q ss_pred CCCEEeCCCCcccccCCccccC
Q 038149 755 MTESMDLSYNKLNGQIPPELGE 776 (844)
Q Consensus 755 ~L~~L~Ls~N~l~~~ip~~l~~ 776 (844)
+|++|||++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 66666554
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.67 E-value=0.0047 Score=59.28 Aligned_cols=84 Identities=23% Similarity=0.230 Sum_probs=74.2
Q ss_pred cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEE
Q 038149 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFN 784 (844)
Q Consensus 705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 784 (844)
+...+.||++.|++- ..-..+..++.|..||++.|.+. -.|..++++..+..+++..|.++ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 446788999999987 55667888899999999999998 78999999999999999999998 7899999999999999
Q ss_pred ccCCccc
Q 038149 785 VSYNNLS 791 (844)
Q Consensus 785 ls~N~l~ 791 (844)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999864
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.42 E-value=0.0024 Score=70.99 Aligned_cols=190 Identities=26% Similarity=0.251 Sum_probs=100.0
Q ss_pred CcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhh----cCC-CCCCEEECCCCCCCCCCc--Ccccc
Q 038149 99 LHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLL----TSL-TSLTSLFLQGNSFSEGFK--HNKGL 171 (844)
Q Consensus 99 L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l-~~L~~L~Ls~n~l~~~~~--~~~~l 171 (844)
+..|.|.+|.+...........+.....|..|++++|.+.+.....+ ... ..|++|++..|.++.... ....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66666666666655554444556666667777777776653222222 222 455666666666532110 02334
Q ss_pred cCCCCCCEEEccCCcCCC--C-Ccccc----cCCCCCCcEEEccCCcCCcC----CcccccCCCC-CCEEECcCCCCCCC
Q 038149 172 VNLRNLEVLDLSGNRITG--S-LIMQG----ICDLKNLVELNINENEFDGL----LPQCLSNLTY-LRVLDLSSNKLSGN 239 (844)
Q Consensus 172 ~~l~~L~~L~Ls~n~l~~--~-~~~~~----l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~-L~~L~Ls~n~l~~~ 239 (844)
.....++.+|++.|.+.. . ..... +....++++|.+.+|.++.. ....+...+. ++.|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456666677777666531 0 00111 23456677777777766532 1122333444 55677777766522
Q ss_pred CC---hhhhcCC-CCCCeEecCCCcccCccC---hhhhcCCCCCCEEEccCccccC
Q 038149 240 LP---LSVIANL-TSLEYLSLFDNHFQESFP---LSVLANHSRLEVFQLSRLQVET 288 (844)
Q Consensus 240 ~p---~~~l~~l-~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~l~~~~i~~ 288 (844)
.- ...+..+ ..+++++++.|.+...-. ...+..+..++.+.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 10 0123334 456777777777664322 1234555677777777776543
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.07 E-value=0.0019 Score=71.76 Aligned_cols=113 Identities=26% Similarity=0.279 Sum_probs=72.7
Q ss_pred CCCCEEeCCCCCCCCCch----hhhcCCCCCCEEECCCCCCCCCCcC--cccccCC-CCCCEEEccCCcCCCCCc---cc
Q 038149 125 KQLKILNIGYNSFNESLV----PLLTSLTSLTSLFLQGNSFSEGFKH--NKGLVNL-RNLEVLDLSGNRITGSLI---MQ 194 (844)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~l-~~L~~L~Ls~n~l~~~~~---~~ 194 (844)
..+..|.|.+|.+..... ..+..+..|+.|++++|.+...... ...+... ..|++|++..|.+++.-. .+
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 348899999999976444 4567889999999999998531111 1122332 567889999998874221 23
Q ss_pred ccCCCCCCcEEEccCCcCCcC----Cccccc----CCCCCCEEECcCCCCC
Q 038149 195 GICDLKNLVELNINENEFDGL----LPQCLS----NLTYLRVLDLSSNKLS 237 (844)
Q Consensus 195 ~l~~l~~L~~L~L~~n~l~~~----~~~~l~----~l~~L~~L~Ls~n~l~ 237 (844)
.+.....++.++++.|.+... ++..+. ...++++|.+++|.++
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 455678888888888876421 222222 3456666666666654
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.01 E-value=0.25 Score=26.69 Aligned_cols=11 Identities=73% Similarity=1.059 Sum_probs=3.5
Q ss_pred CCEEECcCCCC
Q 038149 226 LRVLDLSSNKL 236 (844)
Q Consensus 226 L~~L~Ls~n~l 236 (844)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.84 E-value=0.55 Score=28.56 Aligned_cols=21 Identities=52% Similarity=0.706 Sum_probs=12.3
Q ss_pred CCCCEEECcCCCCCCCCChhhh
Q 038149 224 TYLRVLDLSSNKLSGNLPLSVI 245 (844)
Q Consensus 224 ~~L~~L~Ls~n~l~~~~p~~~l 245 (844)
++|++|+|++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5554433
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.84 E-value=0.55 Score=28.56 Aligned_cols=21 Identities=52% Similarity=0.706 Sum_probs=12.3
Q ss_pred CCCCEEECcCCCCCCCCChhhh
Q 038149 224 TYLRVLDLSSNKLSGNLPLSVI 245 (844)
Q Consensus 224 ~~L~~L~Ls~n~l~~~~p~~~l 245 (844)
++|++|+|++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5554433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.40 E-value=0.044 Score=52.84 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=55.5
Q ss_pred cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccc
Q 038149 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767 (844)
Q Consensus 705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 767 (844)
++.+..||++.|++. -.|.+++++..++.+++.+|+.+ ..|.+++.++.++++++-.|.+.
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 567788999999998 88999999999999999999998 89999999999999999999876
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.94 E-value=0.58 Score=28.46 Aligned_cols=14 Identities=50% Similarity=0.722 Sum_probs=6.6
Q ss_pred CCCCEEEccCCcCC
Q 038149 175 RNLEVLDLSGNRIT 188 (844)
Q Consensus 175 ~~L~~L~Ls~n~l~ 188 (844)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.94 E-value=0.58 Score=28.46 Aligned_cols=14 Identities=50% Similarity=0.722 Sum_probs=6.6
Q ss_pred CCCCEEEccCCcCC
Q 038149 175 RNLEVLDLSGNRIT 188 (844)
Q Consensus 175 ~~L~~L~Ls~n~l~ 188 (844)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.12 E-value=0.24 Score=29.57 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=4.1
Q ss_pred CCEEeCCCCccc
Q 038149 756 TESMDLSYNKLN 767 (844)
Q Consensus 756 L~~L~Ls~N~l~ 767 (844)
|++|+|++|+|+
T Consensus 4 L~~L~l~~n~i~ 15 (24)
T PF13516_consen 4 LETLDLSNNQIT 15 (24)
T ss_dssp -SEEE-TSSBEH
T ss_pred CCEEEccCCcCC
Confidence 344444444433
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.99 E-value=0.21 Score=29.75 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=11.3
Q ss_pred cccCeEeccCcccccccCcc
Q 038149 730 GEIHALNLSNNFLSGSIPRS 749 (844)
Q Consensus 730 ~~L~~L~Ls~N~l~~~ip~~ 749 (844)
++|++|+|++|.|++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 56677777777776554443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.72 E-value=0.37 Score=45.87 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=23.2
Q ss_pred CccEEEccCCcCCCCCCccccccccCcEEeccCCcC
Q 038149 395 ELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNF 430 (844)
Q Consensus 395 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 430 (844)
.++.+|-++..|..+--+.+..++.++.|.+.+|+-
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~ 137 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY 137 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccc
Confidence 466677777776655555566666666666666653
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.37 E-value=0.51 Score=44.98 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=37.7
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcC-Cccccc-CCCCCCEEECcCCC-CCCCCChhhhcCCCCCC
Q 038149 176 NLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL-LPQCLS-NLTYLRVLDLSSNK-LSGNLPLSVIANLTSLE 252 (844)
Q Consensus 176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~Ls~n~-l~~~~p~~~l~~l~~L~ 252 (844)
.++.+|-++..|. ..-.+.+.+++.++.|.+.+|.--+. .-+.++ -.++|+.|++++|. |+ .-....+..+++|+
T Consensus 102 ~IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence 3566666666665 22223345555555555555532211 001111 12456666666553 33 22234455555555
Q ss_pred eEecCC
Q 038149 253 YLSLFD 258 (844)
Q Consensus 253 ~L~L~~ 258 (844)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 555543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.65 E-value=2.3 Score=25.94 Aligned_cols=15 Identities=47% Similarity=0.601 Sum_probs=10.1
Q ss_pred ccCCCEEeCCCCccc
Q 038149 753 LKMTESMDLSYNKLN 767 (844)
Q Consensus 753 l~~L~~L~Ls~N~l~ 767 (844)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777765
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.04 E-value=18 Score=39.38 Aligned_cols=109 Identities=18% Similarity=0.067 Sum_probs=53.5
Q ss_pred CCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccc---cccccCcEEeccCCcCCCCCChhhh--hcC
Q 038149 368 KRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM---GYMERLLFLDLSSNNFSRDLPKHFL--TSC 442 (844)
Q Consensus 368 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~--~~l 442 (844)
-+.+++++++.|.+....|..+.. ..--+.++.|..+...-..+ ..-..+.+++++.|.....+|..+- ..-
T Consensus 164 npr~r~~dls~npi~dkvpihl~~---p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQ---PGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred cchhhhhccCCCcccccCCccccC---CCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 356677788888776666554422 11115566665543211111 1112467777777777666665431 112
Q ss_pred CCCcEEeCcCcccCC---cCCccccCCCCcCEecCCCCcC
Q 038149 443 VSLEFMNLSHNYFDG---QIFPKYMNLAKLVFLFLNDNQF 479 (844)
Q Consensus 443 ~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l 479 (844)
..++.++.+...+.- ..+..+..-+.++..+++.|..
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 234555555443321 1122233445566666666544
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.85 E-value=3.8 Score=24.95 Aligned_cols=12 Identities=50% Similarity=0.714 Sum_probs=5.8
Q ss_pred cCeEeccCcccc
Q 038149 732 IHALNLSNNFLS 743 (844)
Q Consensus 732 L~~L~Ls~N~l~ 743 (844)
|+.|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444455555444
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.71 E-value=6.9 Score=24.30 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=5.7
Q ss_pred CCCEEeCCCCCC
Q 038149 126 QLKILNIGYNSF 137 (844)
Q Consensus 126 ~L~~L~Ls~n~l 137 (844)
+|++|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.53 E-value=25 Score=39.25 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=5.5
Q ss_pred CCCEEEccCCcc
Q 038149 322 DFRYIDLSDNNL 333 (844)
Q Consensus 322 ~L~~L~Ls~n~l 333 (844)
.+..+.|++|++
T Consensus 219 ~i~sl~lsnNrL 230 (585)
T KOG3763|consen 219 EILSLSLSNNRL 230 (585)
T ss_pred ceeeeecccchh
Confidence 344444555544
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.08 E-value=16 Score=40.69 Aligned_cols=80 Identities=23% Similarity=0.207 Sum_probs=44.1
Q ss_pred CCCCCCEEeCCCCCCCC--CchhhhcCCCCCCEEECCCC--CCCCCCcCcccccC--CCCCCEEEccCCcCCCCCcc--c
Q 038149 123 SLKQLKILNIGYNSFNE--SLVPLLTSLTSLTSLFLQGN--SFSEGFKHNKGLVN--LRNLEVLDLSGNRITGSLIM--Q 194 (844)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~--~ 194 (844)
+.+.+..++|++|++.. .+...-...++|+.|+|++| .+.++ ..+.+ ...|+.|-+.+|.+...... +
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~----~el~K~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE----SELDKLKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch----hhhhhhcCCCHHHeeecCCccccchhhhHH
Confidence 45566677777776643 12222234577888888888 33221 12222 34577888899887642211 1
Q ss_pred c----cCCCCCCcEEE
Q 038149 195 G----ICDLKNLVELN 206 (844)
Q Consensus 195 ~----l~~l~~L~~L~ 206 (844)
. -..+|+|..||
T Consensus 292 yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHhcchheeec
Confidence 1 12467776664
No 93
>PF08093 Toxin_23: Magi 5 toxic peptide family; InterPro: IPR012628 This family consists of toxic peptides (Magi 5) found in the venom of the Hexathelidae spider. Magi 5 is the first spider toxin with binding affinity to site 4 of a mammalian sodium channel and the toxin has an insecticidal effect on larvae, causing paralysis when injected into the larvae.; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP3_A 1G9P_A 2GX1_A.
Probab=29.54 E-value=45 Score=20.83 Aligned_cols=17 Identities=35% Similarity=1.073 Sum_probs=10.2
Q ss_pred ccCCCcCCCCCCCCCCC
Q 038149 38 ILVSWVDNRTSDCCTWE 54 (844)
Q Consensus 38 ~l~~W~~~~~~~~C~w~ 54 (844)
.+..|.=++..|||-|.
T Consensus 3 ~l~~~~Cssdk~CCg~t 19 (30)
T PF08093_consen 3 VLTFWRCSSDKDCCGWT 19 (30)
T ss_dssp C-SSSB-SSCCCCCTT-
T ss_pred EeeceeecCCcccccCc
Confidence 45678544457999998
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=22.53 E-value=63 Score=19.41 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=5.1
Q ss_pred CCCCEEeCCCC
Q 038149 125 KQLKILNIGYN 135 (844)
Q Consensus 125 ~~L~~L~Ls~n 135 (844)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.00 E-value=55 Score=44.21 Aligned_cols=33 Identities=30% Similarity=0.237 Sum_probs=27.4
Q ss_pred eccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149 736 NLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768 (844)
Q Consensus 736 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 768 (844)
||++|+|+..-+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999996666678889999999999998763
Done!