Query 038149
Match_columns 844
No_of_seqs 824 out of 4995
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 13:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.8E-94 1.6E-98 861.5 52.0 717 9-828 7-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-73 5.6E-78 683.6 48.0 655 97-813 50-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6.6E-60 2.3E-64 561.2 51.1 583 97-796 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 8.3E-59 2.8E-63 551.7 49.7 588 128-819 7-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 8.5E-55 2.9E-59 510.2 45.0 539 128-796 15-565 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.2E-53 4E-58 500.5 48.7 523 98-771 34-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1E-53 3.5E-58 501.0 42.1 520 97-796 32-563 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 6.6E-53 2.2E-57 494.2 39.5 541 128-819 14-563 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-52 7E-57 506.1 40.8 539 170-825 43-590 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 1E-50 3.5E-55 491.2 41.2 536 152-819 7-565 (844)
11 4eco_A Uncharacterized protein 100.0 9.7E-53 3.3E-57 492.0 19.5 86 11-109 27-117 (636)
12 4ecn_A Leucine-rich repeat pro 100.0 2.1E-50 7.1E-55 478.7 29.4 457 9-551 264-839 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 1.2E-48 4.1E-53 454.9 37.6 276 469-799 259-539 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 1.6E-47 5.6E-52 445.3 39.9 497 97-652 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-47 1.2E-51 440.2 32.3 346 392-797 146-516 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-46 5.9E-51 434.4 36.8 475 97-651 26-514 (549)
17 4eco_A Uncharacterized protein 100.0 1.8E-47 6E-52 447.5 23.7 431 298-793 82-602 (636)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-45 6.5E-50 422.4 25.8 439 200-795 21-485 (520)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-43 6E-48 417.2 42.8 520 98-768 53-581 (635)
20 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-43 7E-48 416.6 42.4 534 100-795 34-584 (635)
21 4ecn_A Leucine-rich repeat pro 100.0 9E-45 3.1E-49 430.5 28.1 437 297-795 323-844 (876)
22 2z7x_B TOLL-like receptor 1, v 100.0 2E-44 6.8E-49 414.0 28.5 458 128-651 3-485 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.8E-42 2.7E-46 395.6 27.7 463 123-652 29-515 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 8.2E-41 2.8E-45 377.3 29.6 375 373-800 14-417 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-41 1E-45 390.7 25.5 435 297-797 52-516 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 2.1E-39 7E-44 362.4 26.1 403 296-815 10-430 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 9.4E-40 3.2E-44 365.1 22.9 301 394-797 131-435 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 1.6E-38 5.5E-43 358.5 29.4 370 396-818 12-412 (455)
29 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-38 1.5E-42 335.0 19.0 295 10-357 2-302 (313)
30 2id5_A Lingo-1, leucine rich r 100.0 6.2E-37 2.1E-41 347.5 25.1 326 444-817 33-359 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 7.2E-37 2.5E-41 342.1 24.9 366 307-797 28-393 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-35 3.9E-40 332.4 29.6 358 92-535 37-394 (457)
33 1o6v_A Internalin A; bacterial 100.0 4E-35 1.4E-39 330.9 33.1 345 369-793 46-390 (466)
34 1o6v_A Internalin A; bacterial 100.0 9.7E-35 3.3E-39 327.8 31.2 345 393-815 45-389 (466)
35 1ogq_A PGIP-2, polygalacturona 100.0 7.6E-36 2.6E-40 317.6 18.5 260 491-824 50-313 (313)
36 3o6n_A APL1; leucine-rich repe 100.0 1.3E-34 4.4E-39 319.2 26.0 334 418-818 45-378 (390)
37 2id5_A Lingo-1, leucine rich r 100.0 1.8E-34 6.3E-39 327.1 27.5 261 369-654 32-292 (477)
38 3oja_B Anopheles plasmodium-re 100.0 1.7E-34 5.7E-39 335.8 26.2 335 417-818 50-384 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 8.7E-34 3E-38 312.6 25.9 311 95-457 43-353 (390)
40 4fmz_A Internalin; leucine ric 100.0 2.2E-32 7.5E-37 296.5 29.2 304 393-791 43-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 2.1E-32 7.3E-37 318.1 29.5 311 95-457 49-359 (597)
42 4fmz_A Internalin; leucine ric 100.0 5.4E-32 1.9E-36 293.4 30.8 305 367-767 42-346 (347)
43 1z7x_W Ribonuclease inhibitor; 100.0 7.2E-35 2.4E-39 329.3 -3.0 255 369-623 3-297 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 8.8E-31 3E-35 281.7 24.7 290 419-789 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-30 8.3E-35 278.3 26.3 294 395-741 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 3.1E-30 1.1E-34 277.2 26.8 291 419-789 32-330 (330)
47 1xku_A Decorin; proteoglycan, 100.0 1.2E-29 4E-34 272.7 29.2 295 395-741 32-330 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 3.6E-33 1.2E-37 315.4 -0.7 391 297-769 3-442 (461)
49 4fcg_A Uncharacterized protein 100.0 8.6E-31 2.9E-35 280.3 15.0 281 9-358 22-313 (328)
50 2z66_A Variable lymphocyte rec 100.0 1.3E-28 4.4E-33 261.7 17.2 251 470-795 10-265 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 1.4E-28 4.8E-33 266.9 15.7 280 442-796 30-319 (353)
52 2z66_A Variable lymphocyte rec 100.0 1.2E-27 4.2E-32 254.1 20.9 227 397-651 10-240 (306)
53 4fcg_A Uncharacterized protein 100.0 4.7E-28 1.6E-32 259.0 17.5 234 467-791 81-314 (328)
54 3ogk_B Coronatine-insensitive 100.0 5.3E-30 1.8E-34 299.1 2.4 400 318-788 109-548 (592)
55 2z80_A TOLL-like receptor 2, v 100.0 2.5E-28 8.6E-33 264.9 14.4 284 414-771 27-318 (353)
56 3ogk_B Coronatine-insensitive 100.0 1E-29 3.4E-34 296.8 3.3 381 367-793 110-528 (592)
57 3o53_A Protein LRIM1, AGAP0063 100.0 5.3E-29 1.8E-33 265.6 7.4 268 469-797 12-282 (317)
58 3zyi_A Leucine-rich repeat-con 99.9 3.3E-26 1.1E-30 257.0 28.0 250 469-794 56-306 (452)
59 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-27 1.1E-31 248.0 17.5 253 470-796 14-266 (285)
60 1ozn_A Reticulon 4 receptor; N 99.9 2E-26 6.8E-31 242.0 21.8 201 421-648 14-215 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 2.9E-26 9.8E-31 256.5 23.9 248 469-792 45-293 (440)
62 3o53_A Protein LRIM1, AGAP0063 99.9 3.9E-28 1.3E-32 258.8 6.9 269 419-773 11-282 (317)
63 1wwl_A Monocyte differentiatio 99.9 1.7E-28 5.6E-33 261.1 3.5 250 463-792 39-310 (312)
64 1wwl_A Monocyte differentiatio 99.9 2.3E-27 8E-32 252.2 11.1 212 413-652 38-270 (312)
65 3g06_A SSPH2 (leucine-rich rep 99.9 9.8E-26 3.4E-30 259.1 24.6 268 395-778 41-308 (622)
66 3oja_A Leucine-rich immune mol 99.9 2.7E-27 9.2E-32 267.1 10.9 235 491-786 34-270 (487)
67 3zyj_A Leucine-rich repeat-con 99.9 2.2E-25 7.5E-30 249.3 25.1 247 397-648 46-293 (440)
68 3zyi_A Leucine-rich repeat-con 99.9 2.2E-25 7.6E-30 250.2 25.2 249 396-649 56-305 (452)
69 3g06_A SSPH2 (leucine-rich rep 99.9 4.5E-25 1.6E-29 253.6 27.2 263 444-797 41-303 (622)
70 3oja_A Leucine-rich immune mol 99.9 1.7E-26 6E-31 260.4 11.9 245 514-818 33-286 (487)
71 2p1m_B Transport inhibitor res 99.9 5.1E-28 1.8E-32 282.4 -1.3 373 368-792 129-545 (594)
72 2p1m_B Transport inhibitor res 99.9 3.2E-27 1.1E-31 275.7 -0.6 378 367-792 103-520 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 5.2E-24 1.8E-28 222.3 21.9 227 496-797 12-243 (276)
74 2o6q_A Variable lymphocyte rec 99.9 8.2E-24 2.8E-28 219.9 23.1 216 48-286 2-217 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 1.4E-23 4.7E-28 219.2 19.6 229 471-771 11-241 (276)
76 2o6q_A Variable lymphocyte rec 99.9 8.4E-23 2.9E-27 212.2 22.2 206 541-796 18-223 (270)
77 3rfs_A Internalin B, repeat mo 99.9 1.1E-23 3.9E-28 218.9 14.4 162 581-797 80-241 (272)
78 3rfs_A Internalin B, repeat mo 99.9 1.7E-23 6E-28 217.6 15.1 227 469-779 21-247 (272)
79 1p9a_G Platelet glycoprotein I 99.9 1E-22 3.5E-27 213.3 20.6 206 535-794 6-211 (290)
80 1p9a_G Platelet glycoprotein I 99.9 1.6E-22 5.3E-27 212.0 20.8 203 511-768 6-209 (290)
81 3goz_A Leucine-rich repeat-con 99.9 4.2E-24 1.5E-28 232.2 6.1 182 448-648 3-210 (362)
82 2ca6_A RAN GTPase-activating p 99.9 1.6E-24 5.4E-29 238.1 2.3 241 484-795 25-320 (386)
83 3goz_A Leucine-rich repeat-con 99.9 4.9E-24 1.7E-28 231.7 5.9 260 472-794 3-300 (362)
84 3m19_A Variable lymphocyte rec 99.9 3.4E-22 1.1E-26 205.2 17.0 212 563-826 15-232 (251)
85 3m19_A Variable lymphocyte rec 99.9 9.6E-22 3.3E-26 201.8 19.7 192 49-264 3-194 (251)
86 2ca6_A RAN GTPase-activating p 99.9 5.9E-24 2E-28 233.5 3.1 246 459-771 24-320 (386)
87 2ast_B S-phase kinase-associat 99.9 4.6E-23 1.6E-27 222.0 7.5 249 493-797 49-312 (336)
88 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.7E-27 216.0 10.2 231 492-792 65-308 (310)
89 4glp_A Monocyte differentiatio 99.9 3E-22 1E-26 212.6 11.5 201 561-814 90-307 (310)
90 2ast_B S-phase kinase-associat 99.9 8.6E-23 3E-27 219.9 6.5 198 443-644 47-257 (336)
91 2xwt_C Thyrotropin receptor; s 99.9 2E-21 6.8E-26 198.0 14.1 200 562-811 31-236 (239)
92 2xwt_C Thyrotropin receptor; s 99.9 3.6E-21 1.2E-25 196.1 14.9 198 516-789 32-237 (239)
93 1h6u_A Internalin H; cell adhe 99.8 1.4E-20 4.9E-25 199.1 17.3 195 511-792 37-231 (308)
94 1h6u_A Internalin H; cell adhe 99.8 2.4E-20 8.1E-25 197.4 15.6 209 398-648 23-231 (308)
95 3cvr_A Invasion plasmid antige 99.8 9.8E-20 3.3E-24 206.6 17.1 189 515-778 59-254 (571)
96 3cvr_A Invasion plasmid antige 99.8 8.5E-20 2.9E-24 207.1 15.9 197 491-755 59-255 (571)
97 4ay9_X Follicle-stimulating ho 99.8 1.8E-19 6.2E-24 194.5 17.8 153 470-647 12-167 (350)
98 2o6s_A Variable lymphocyte rec 99.8 8.6E-20 3E-24 181.5 13.7 175 565-797 10-184 (208)
99 2o6s_A Variable lymphocyte rec 99.8 8.8E-20 3E-24 181.4 13.5 163 562-779 28-190 (208)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 9.1E-20 3.1E-24 182.6 11.1 157 589-796 14-171 (220)
101 4ay9_X Follicle-stimulating ho 99.8 5E-19 1.7E-23 191.0 17.8 241 397-645 12-257 (350)
102 2v9t_B SLIT homolog 2 protein 99.8 4E-19 1.4E-23 177.9 11.5 155 589-794 14-168 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-18 8.5E-23 172.1 15.0 156 565-771 14-170 (220)
104 3e6j_A Variable lymphocyte rec 99.8 3.6E-18 1.2E-22 172.2 15.3 157 588-796 21-177 (229)
105 1h6t_A Internalin B; cell adhe 99.8 4.1E-18 1.4E-22 178.5 16.2 169 562-792 46-214 (291)
106 2xot_A Amphoterin-induced prot 99.8 1.3E-18 4.3E-23 188.7 12.2 112 542-655 21-133 (361)
107 2v9t_B SLIT homolog 2 protein 99.8 4.8E-18 1.6E-22 170.0 15.2 153 565-768 14-166 (220)
108 2xot_A Amphoterin-induced prot 99.8 2.2E-18 7.4E-23 186.8 11.9 180 564-794 20-205 (361)
109 3e6j_A Variable lymphocyte rec 99.7 1.4E-17 4.9E-22 167.7 16.1 156 564-771 21-176 (229)
110 1m9s_A Internalin B; cell inva 99.7 7.1E-18 2.4E-22 193.6 14.7 190 444-648 22-211 (605)
111 1dce_A Protein (RAB geranylger 99.7 2E-20 6.7E-25 213.7 -8.1 78 706-785 486-567 (567)
112 1w8a_A SLIT protein; signaling 99.7 5.6E-18 1.9E-22 165.6 10.1 114 705-818 53-166 (192)
113 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.8E-22 164.4 11.7 155 583-792 41-195 (197)
114 1h6t_A Internalin B; cell adhe 99.7 1.3E-17 4.6E-22 174.6 12.9 171 415-623 43-213 (291)
115 1m9s_A Internalin B; cell inva 99.7 1.9E-17 6.4E-22 190.2 15.3 194 417-626 20-213 (605)
116 4ezg_A Putative uncharacterize 99.7 3E-17 1E-21 161.3 12.5 154 560-768 42-195 (197)
117 4b8c_D Glucose-repressible alc 99.7 4.5E-18 1.6E-22 200.5 7.4 124 530-656 215-338 (727)
118 1w8a_A SLIT protein; signaling 99.7 2.3E-17 7.7E-22 161.3 10.3 181 589-823 11-192 (192)
119 1dce_A Protein (RAB geranylger 99.7 4E-19 1.4E-23 202.9 -3.1 177 561-797 348-552 (567)
120 1xeu_A Internalin C; cellular 99.7 4E-17 1.4E-21 168.1 10.9 169 562-793 19-187 (263)
121 1xeu_A Internalin C; cellular 99.7 7.4E-17 2.5E-21 166.1 11.9 170 466-649 18-187 (263)
122 4b8c_D Glucose-repressible alc 99.7 1.2E-17 4.2E-22 196.7 6.7 146 506-655 215-362 (727)
123 2ell_A Acidic leucine-rich nuc 99.6 6.1E-16 2.1E-20 147.7 10.5 88 705-792 70-161 (168)
124 2ell_A Acidic leucine-rich nuc 99.6 8.3E-16 2.8E-20 146.8 11.1 139 584-773 22-165 (168)
125 2je0_A Acidic leucine-rich nuc 99.6 7.2E-16 2.5E-20 144.0 9.5 128 610-787 17-149 (149)
126 2wfh_A SLIT homolog 2 protein 99.6 1.1E-15 3.7E-20 149.2 10.3 90 705-794 53-142 (193)
127 3sb4_A Hypothetical leucine ri 99.6 8E-16 2.7E-20 164.4 9.4 100 539-640 226-327 (329)
128 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.9E-20 142.6 9.1 128 586-763 17-149 (149)
129 2o6r_A Variable lymphocyte rec 99.6 5.1E-15 1.8E-19 142.6 12.3 91 706-796 52-142 (177)
130 3sb4_A Hypothetical leucine ri 99.6 2.6E-15 8.8E-20 160.5 11.1 258 393-660 48-323 (329)
131 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4E-19 141.9 12.2 128 690-818 15-143 (193)
132 4fs7_A Uncharacterized protein 99.6 1.6E-13 5.6E-18 150.4 22.1 67 87-159 61-127 (394)
133 2o6r_A Variable lymphocyte rec 99.6 1.7E-14 5.9E-19 138.9 12.3 133 588-771 9-141 (177)
134 1ds9_A Outer arm dynein; leuci 99.5 1.8E-16 6.1E-21 155.9 -2.4 155 582-791 14-185 (198)
135 4fs7_A Uncharacterized protein 99.5 2.6E-13 8.9E-18 148.7 21.2 335 137-544 59-393 (394)
136 4fdw_A Leucine rich hypothetic 99.5 2.6E-13 8.9E-18 147.9 20.9 253 84-380 123-381 (401)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.9E-14 1E-18 137.1 10.6 83 707-791 65-153 (176)
138 4fdw_A Leucine rich hypothetic 99.5 1.4E-12 4.7E-17 142.2 22.5 241 492-790 136-382 (401)
139 1a9n_A U2A', U2A'; complex (nu 99.5 4.3E-14 1.5E-18 135.9 8.7 136 580-768 13-154 (176)
140 1ds9_A Outer arm dynein; leuci 99.5 8.5E-16 2.9E-20 151.0 -3.9 136 578-768 40-186 (198)
141 3g39_A Variable lymphocyte rec 99.4 2.5E-13 8.5E-18 129.5 10.4 92 706-797 30-121 (170)
142 3g39_A Variable lymphocyte rec 99.4 8.5E-13 2.9E-17 125.8 10.1 108 708-818 11-119 (170)
143 2r9u_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 124.1 10.4 107 689-795 16-122 (174)
144 2r9u_A Variable lymphocyte rec 99.4 1.7E-12 5.7E-17 124.1 9.9 107 709-818 15-122 (174)
145 4gt6_A Cell surface protein; l 99.3 1E-10 3.5E-15 128.0 23.9 334 138-550 52-389 (394)
146 4gt6_A Cell surface protein; l 99.3 3E-10 1E-14 124.2 24.7 156 119-285 57-216 (394)
147 3un9_A NLR family member X1; l 99.2 3.3E-13 1.1E-17 145.7 -2.0 69 706-774 183-259 (372)
148 2ifg_A High affinity nerve gro 99.2 2.3E-11 7.8E-16 130.9 9.9 88 705-793 30-118 (347)
149 2ifg_A High affinity nerve gro 99.2 2.4E-11 8.1E-16 130.8 7.7 107 710-818 12-120 (347)
150 3un9_A NLR family member X1; l 99.1 2.8E-12 9.5E-17 138.4 -0.8 135 394-528 72-224 (372)
151 4h09_A Hypothetical leucine ri 99.0 3.5E-08 1.2E-12 107.2 21.8 82 171-259 42-123 (379)
152 4h09_A Hypothetical leucine ri 98.9 1.1E-07 3.9E-12 103.2 23.2 128 142-282 39-166 (379)
153 2ra8_A Uncharacterized protein 98.8 3.9E-09 1.3E-13 112.7 6.2 64 705-768 251-321 (362)
154 2ra8_A Uncharacterized protein 98.7 4.4E-09 1.5E-13 112.3 4.6 40 705-744 278-321 (362)
155 3rw6_A Nuclear RNA export fact 98.6 2E-09 6.9E-14 108.7 -2.0 83 146-230 167-257 (267)
156 1io0_A Tropomodulin; LRR prote 98.4 3.9E-08 1.3E-12 94.6 0.8 123 93-237 32-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 3.3E-07 1.1E-11 92.5 5.9 66 728-795 168-237 (267)
158 1io0_A Tropomodulin; LRR prote 98.2 5E-07 1.7E-11 86.8 3.6 18 630-647 147-164 (185)
159 3e4g_A ATP synthase subunit S, 97.8 6.2E-06 2.1E-10 76.9 1.7 82 98-185 62-149 (176)
160 3e4g_A ATP synthase subunit S, 97.5 2.6E-05 8.8E-10 72.7 2.1 83 444-526 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00011 3.7E-09 69.9 1.1 67 95-161 39-110 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0017 5.8E-08 61.7 4.7 63 584-646 96-169 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.0042 1.4E-07 55.0 6.0 56 710-767 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.004 1.4E-07 55.1 5.5 58 733-792 11-69 (130)
165 2lz0_A Uncharacterized protein 53.9 13 0.00045 30.4 4.2 45 85-134 8-52 (100)
166 2lz0_A Uncharacterized protein 49.8 17 0.00058 29.7 4.2 15 194-208 37-51 (100)
167 3ox7_P MH027; urokinase-type p 21.7 30 0.001 18.6 0.7 10 49-58 6-15 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.8e-94 Score=861.51 Aligned_cols=717 Identities=30% Similarity=0.432 Sum_probs=524.9
Q ss_pred CCCcHHHHHHHHHhhhcccccccccccccccCCCcCCCCCCCCCCCceEecCCCCceEEEeeCcCcccCCCCCCCCCccc
Q 038149 9 KSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPII 88 (844)
Q Consensus 9 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~C~w~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~~~~ 88 (844)
..+.++||+|||+||+++.+ |. ++++|+. ++|||+|+||+|+ +|||++|+|++..+ .|.+ ..+
T Consensus 7 ~~~~~~~~~all~~k~~~~~----~~---~l~~W~~--~~~~C~w~gv~C~--~~~v~~L~L~~~~l--~g~~----~~l 69 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPD----KN---LLPDWSS--NKNPCTFDGVTCR--DDKVTSIDLSSKPL--NVGF----SAV 69 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSC----TT---SSTTCCT--TSCGGGSTTEEEE--TTEEEEEECTTSCC--CEEH----HHH
T ss_pred ccCCHHHHHHHHHHHhhCCC----cc---cccCCCC--CCCCcCCcceEEC--CCcEEEEECCCCCc--CCcc----Ccc
Confidence 34578999999999999964 42 6899974 4799999999998 69999999999876 3331 002
Q ss_pred CCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchh--hhcCCCCCCEEECCCCCCCCCCc
Q 038149 89 NMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVP--LLTSLTSLTSLFLQGNSFSEGFK 166 (844)
Q Consensus 89 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~ 166 (844)
++.+.++++|+.++++.+.+.... ..++++++|++|+|++|.+.+.+|. .++++++|++|+|++|.+ .+.+
T Consensus 70 -~~~l~~L~~L~~l~~~~~~~~~l~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~ 142 (768)
T 3rgz_A 70 -SSSLLSLTGLESLFLSNSHINGSV-----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPG 142 (768)
T ss_dssp -HHHTTTCTTCCEEECTTSCEEECC-----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE-ECCS
T ss_pred -ChhHhccCcccccCCcCCCcCCCc-----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc-CCcC
Confidence 246788899999999988764322 4689999999999999999998888 999999999999999998 4556
Q ss_pred CcccccCCCCCCEEEccCCcCCCCCcccc--cCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhh
Q 038149 167 HNKGLVNLRNLEVLDLSGNRITGSLIMQG--ICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSV 244 (844)
Q Consensus 167 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 244 (844)
+...+.++++|++|++++|++++..+... +.++++|++|++++|.+++..+ +.++++|++|++++|.+++.+| .
T Consensus 143 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-~- 218 (768)
T 3rgz_A 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-F- 218 (768)
T ss_dssp SCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCC-B-
T ss_pred CHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCc-c-
Confidence 64455899999999999999986544321 7899999999999999997765 3889999999999999998787 4
Q ss_pred hcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcC-CCC
Q 038149 245 IANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQ-YDF 323 (844)
Q Consensus 245 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L 323 (844)
++++++|++|++++|.+++.+| ..+.++++|++|++++|.+....... .+.+|++|++++|.+++.+|..+... ++|
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 9999999999999999998777 46888888888888777765433332 45566666666666666666655543 666
Q ss_pred CEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccC
Q 038149 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQ 403 (844)
Q Consensus 324 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~ 403 (844)
++|++++|++++.+|..+. .+++|++|++++|.+.|.+|......+++|++|++++
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~------------------------~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFG------------------------SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp SEEECCSSEEEECCCGGGG------------------------GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred CEEECcCCcCCCccchHHh------------------------cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 6666666666655555443 3345555566666666666655333466677777777
Q ss_pred CcCCCCCCccccccc-cCcEEeccCCcCCCCCChhhhhc-CCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcc
Q 038149 404 NSFEGSIPPSMGYME-RLLFLDLSSNNFSRDLPKHFLTS-CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTG 481 (844)
Q Consensus 404 n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 481 (844)
|.+++.+|..+..++ +|++|++++|.+++.+|..+... +++|++|++++|++++.+|..+..+++|++|++++|++++
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 766666666666665 66677777666666665544211 4566666666666666666666666666666666666666
Q ss_pred cccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-C
Q 038149 482 RLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-N 560 (844)
Q Consensus 482 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~ 560 (844)
.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++.+.+|..+ .
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 666666666666666666666666666666666666666666666666666666666666666666666665555544 5
Q ss_pred CCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCC--------------------
Q 038149 561 HSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN-------------------- 620 (844)
Q Consensus 561 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N-------------------- 620 (844)
+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+.....+..+.+..+
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 555555555555555555555666666666666666665555555555444443333221
Q ss_pred --cccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccc
Q 038149 621 --NLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYE 698 (844)
Q Consensus 621 --~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (844)
.+.+..+..+..++.+..++++.|.++|.+|..+++
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~------------------------------------------ 630 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN------------------------------------------ 630 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS------------------------------------------
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhc------------------------------------------
Confidence 122223333333344444444444444444444332
Q ss_pred cccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCC
Q 038149 699 SYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS 778 (844)
Q Consensus 699 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 778 (844)
+++|++|||++|+++|.+|.+++.+++|++|+|++|+++|.+|..|+++++|++|||++|+++|.+|..++.++
T Consensus 631 ------l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 631 ------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp ------SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred ------cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcCccCCCCCCCCCC
Q 038149 779 FLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNCSSELP 828 (844)
Q Consensus 779 ~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~~~ 828 (844)
+|++||+++|+++|.||..++|.+|...+|.|||++||+|+. +|.+..+
T Consensus 705 ~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp CCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred CCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 999999999999999999999999999999999999999986 8976554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-73 Score=683.62 Aligned_cols=655 Identities=27% Similarity=0.381 Sum_probs=498.1
Q ss_pred CCCcEEeCCCCCCCCC---CccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCc-cccc
Q 038149 97 QELHVLDLSDNRFEGW---EENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHN-KGLV 172 (844)
Q Consensus 97 ~~L~~L~Ls~n~i~~~---~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~l~ 172 (844)
.+++.|+|+++.+.|. .+ ..+.++++|+.++++.+.+.. .|..|+++++|++|+|++|.+ .+.+|. ..++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~----~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSL-SGPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHH----HHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEE-EEEGGGGGGGG
T ss_pred CcEEEEECCCCCcCCccCccC----hhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcC-CCcCCChHHHh
Confidence 4667777777766654 33 355666666666666665422 335566666666666666665 333331 1455
Q ss_pred CCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCccc---ccCCCCCCEEECcCCCCCCCCChhhhcCCC
Q 038149 173 NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQC---LSNLTYLRVLDLSSNKLSGNLPLSVIANLT 249 (844)
Q Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~ 249 (844)
++++|++|+|++|.+++.++...+.++++|++|++++|.+++..|.. +.++++|++|++++|.+++.+| +..++
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~ 200 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCV 200 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCT
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCC
Confidence 66666666666666555444433355566666666666655555544 4555556666666555554433 24555
Q ss_pred CCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEcc
Q 038149 250 SLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLS 329 (844)
Q Consensus 250 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 329 (844)
+|++|++++|.+.+.+|. +++++ +|++|++++|.+++.+|..+..+++|++|+++
T Consensus 201 ~L~~L~Ls~n~l~~~~~~--l~~l~-----------------------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF--LGDCS-----------------------ALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp TCCEEECCSSCCCSCCCB--CTTCC-----------------------SCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred cCCEEECcCCcCCCCCcc--cccCC-----------------------CCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 555555555555543332 33333 34445555555666666666666666666666
Q ss_pred CCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCC
Q 038149 330 DNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGS 409 (844)
Q Consensus 330 ~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~ 409 (844)
+|.+.+.+|. . .+++|++|++++|.+.+.+|..++..+++|++|++++|.+++.
T Consensus 256 ~n~l~~~~~~-------------------------~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 256 SNQFVGPIPP-------------------------L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp SSCCEESCCC-------------------------C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred CCcccCccCc-------------------------c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 6666554442 1 4678888899999988899988876569999999999999999
Q ss_pred CCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCC-CcCEecCCCCcCccccccccc
Q 038149 410 IPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLA-KLVFLFLNDNQFTGRLEVGLL 488 (844)
Q Consensus 410 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 488 (844)
+|..++.+++|++|++++|.+++.+|...+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+.
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 9999999999999999999999899988778999999999999999999999998887 999999999999998888887
Q ss_pred C--CCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCc
Q 038149 489 N--ASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLR 565 (844)
Q Consensus 489 ~--l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~ 565 (844)
. +++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+ .+++|+
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 7 7899999999999999999999999999999999999999999999999999999999999999888877 889999
Q ss_pred EEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCc
Q 038149 566 YLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNT 645 (844)
Q Consensus 566 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 645 (844)
+|++++|++++.+|..+..+++|++|++++|++++.+|.+++.+++|++|+|++|+++|.+|..++.+++|+.|++++|+
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCch
Q 038149 646 LNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSE 725 (844)
Q Consensus 646 l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 725 (844)
++|.+|.+++............+........................ ..........+..+..++++.|.+.|.+|..
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF--QGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC--TTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred cCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc--ccccchhhhccccccccccccceecccCchh
Confidence 99999999877653322111100000000000000000000000000 0000111123556677889999999999999
Q ss_pred hhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC-CcCCCcC
Q 038149 726 IGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK-GQFANFD 804 (844)
Q Consensus 726 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~ 804 (844)
++.+++|++|||++|+++|.+|.+|+++++|+.|||++|+++|.||..++.+++|++|||++|+++|.||.. +.+..+.
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 7777888
Q ss_pred ccccCCCCC
Q 038149 805 ESNYRGNPY 813 (844)
Q Consensus 805 ~~~~~gn~~ 813 (844)
.+.+.+|+.
T Consensus 708 ~L~ls~N~l 716 (768)
T 3rgz_A 708 EIDLSNNNL 716 (768)
T ss_dssp EEECCSSEE
T ss_pred EEECcCCcc
Confidence 888888864
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.6e-60 Score=561.16 Aligned_cols=583 Identities=22% Similarity=0.201 Sum_probs=375.7
Q ss_pred CCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCC
Q 038149 97 QELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRN 176 (844)
Q Consensus 97 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 176 (844)
+++++|++++|.++++.+ ..+.++++|++|+|++|.+++..|..|+++++|++|+|++|.+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--------------- 85 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL--------------- 85 (680)
T ss_dssp TTCSEEECCSSCCCCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC---------------
T ss_pred CCCcEEECCCCCCCCcCH----HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc---------------
Confidence 455555555555555443 3344555555555555555555555555555555555555544
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEec
Q 038149 177 LEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSL 256 (844)
Q Consensus 177 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L 256 (844)
+ .++...|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..| ..++++++|++|++
T Consensus 86 -----------~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 86 -----------S-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLL 152 (680)
T ss_dssp -----------C-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEEC
T ss_pred -----------C-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhhcccccCCEEEc
Confidence 4 3333334444555555555554444444445555555555555555543333 44445555555555
Q ss_pred CCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCccccc
Q 038149 257 FDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDT 336 (844)
Q Consensus 257 ~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 336 (844)
++|.+++..+ ..+... ...+|++|++++|.+++..|..+..+.+|+.++++++.+.+.
T Consensus 153 ~~n~l~~~~~-~~~~~~---------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~ 210 (680)
T 1ziw_A 153 SNNKIQALKS-EELDIF---------------------ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210 (680)
T ss_dssp CSSCCCCBCH-HHHGGG---------------------TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHH
T ss_pred cCCcccccCH-HHhhcc---------------------ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChh
Confidence 5554443222 111100 011344455555555555666666667777777777665533
Q ss_pred CchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCC--CCccEEEccCCcCCCCCCccc
Q 038149 337 FPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLIL--PELVYLDMSQNSFEGSIPPSM 414 (844)
Q Consensus 337 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~ 414 (844)
....+...+ ..++|++|++++|.+.+..|..+.. + ++|++|++++|.+++..|..+
T Consensus 211 ~~~~~~~~l---------------------~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~ 268 (680)
T 1ziw_A 211 LTEKLCLEL---------------------ANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSF 268 (680)
T ss_dssp HHHHHHHHH---------------------TTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTT
T ss_pred hHHHHHHHh---------------------hhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccc
Confidence 222221100 1234445555555544444444332 2 236666666666665555556
Q ss_pred cccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCc-----CC----ccccCCCCcCEecCCCCcCcccccc
Q 038149 415 GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQ-----IF----PKYMNLAKLVFLFLNDNQFTGRLEV 485 (844)
Q Consensus 415 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~----~~~~~l~~L~~L~L~~n~l~~~~~~ 485 (844)
+.+++|++|++++|.+++..|.. +..+++|++|++++|...+. +| ..+..+++|++|++++|.+.+..+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred cCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence 66666666666666665433333 35566666666665543321 11 2566777788888888888777777
Q ss_pred cccCCCCCcEEEccCcccCcC--CChhhhc--CCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCC-CC-
Q 038149 486 GLLNASSLYVLDVSNNMLSGQ--LPRWIGK--FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEF-SS- 559 (844)
Q Consensus 486 ~~~~l~~L~~L~ls~n~l~~~--~p~~l~~--l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~-~~- 559 (844)
.+..+++|++|++++|.+... .+..+.. .++|+.|++++|++++..|..+..+++|++|++++|.+.+.++. .+
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence 777788888888887765421 1222332 25788888888888888888888888888888888888776653 33
Q ss_pred CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCC--cccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCC
Q 038149 560 NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS--GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLA 637 (844)
Q Consensus 560 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 637 (844)
.+++|++|++++|++++..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 507 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccC
Confidence 7888888888888888888888999999999999999886 56788899999999999999999987788899999999
Q ss_pred EEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCc
Q 038149 638 IVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNE 717 (844)
Q Consensus 638 ~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 717 (844)
.|++++|++++..+..+.... ......+++|++|+|++|+
T Consensus 508 ~L~Ls~N~l~~~~~~~~~~~~----------------------------------------~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 508 ILDLQHNNLARLWKHANPGGP----------------------------------------IYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp EEECCSSCCGGGGSTTSTTSC----------------------------------------CCTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCCccccchhhccCCc----------------------------------------chhhcCCCCCCEEECCCCC
Confidence 999999998854333221100 0001126789999999999
Q ss_pred ccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCcccc-CCCCCCEEEccCCcccccCCC
Q 038149 718 LTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELG-ELSFLAIFNVSYNNLSGTVPN 796 (844)
Q Consensus 718 l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip~ 796 (844)
++...+..|+.+++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+.
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9944344689999999999999999977777789999999999999999998888787 789999999999999998875
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.3e-59 Score=551.72 Aligned_cols=588 Identities=21% Similarity=0.194 Sum_probs=455.1
Q ss_pred CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149 128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207 (844)
Q Consensus 128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 207 (844)
+.+++++++++. +|..+. +++++|+|++|.++. ++...|.++++|++|+|++|.+++ +++..++++++|++|+|
T Consensus 7 ~~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 7 EVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNL 80 (680)
T ss_dssp SEEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEEC
T ss_pred CeeECCCCCccc-cccccC--CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEEC
Confidence 467777777754 333333 567777777777643 444566777777777777777763 33445666777777777
Q ss_pred cCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCcccc
Q 038149 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVE 287 (844)
Q Consensus 208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~ 287 (844)
++|.+++..+..|+++++|++|++++|.++ .++...|+++++|++|++++|.+.+..+ ..+.++
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l-------------- 144 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQL-------------- 144 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCC--------------
T ss_pred CCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCc-hhhccc--------------
Confidence 777776555556777777777777777776 3333566677777777777776654433 223333
Q ss_pred CCCCCCCCCCcccEEEccCCCCCcCcChhhh--cCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCC
Q 038149 288 TENFPWLPKFQLKVLNLRHCNISGTIPRFLQ--YQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLP 365 (844)
Q Consensus 288 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~ 365 (844)
.+|++|++++|.+++..+..+. .+++|++|++++|.+.+..|..+. .+++|+.
T Consensus 145 ---------~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~--------------- 199 (680)
T 1ziw_A 145 ---------ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFG--------------- 199 (680)
T ss_dssp ---------TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG-GSSEECE---------------
T ss_pred ---------ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhh-hhhhhhh---------------
Confidence 3455566666677666666554 457888888888888776665553 4555544
Q ss_pred CCCCCCCEEEccCCcccccCChhhh--cCCCCccEEEccCCcCCCCCCcccccccc--CcEEeccCCcCCCCCChhhhhc
Q 038149 366 NSKRNLPHLVISNNSFIGKLPENFG--LILPELVYLDMSQNSFEGSIPPSMGYMER--LLFLDLSSNNFSRDLPKHFLTS 441 (844)
Q Consensus 366 ~~~~~L~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~~~ 441 (844)
|++.++.+.+.....+. ...++|++|++++|.+++..|..+..++. |++|++++|.+++..|. .+..
T Consensus 200 --------L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~ 270 (680)
T 1ziw_A 200 --------LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND-SFAW 270 (680)
T ss_dssp --------EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT-TTTT
T ss_pred --------hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc-cccC
Confidence 44444444322221111 02478999999999999988999988866 99999999999855444 4588
Q ss_pred CCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcc-----ccc----ccccCCCCCcEEEccCcccCcCCChhhh
Q 038149 442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTG-----RLE----VGLLNASSLYVLDVSNNMLSGQLPRWIG 512 (844)
Q Consensus 442 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~l~~L~~L~ls~n~l~~~~p~~l~ 512 (844)
+++|++|++++|++.+..+..+..+++|+.|++++|...+ .+| ..+..+++|++|++++|.+++..+..|.
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 350 (680)
T 1ziw_A 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350 (680)
T ss_dssp CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT
T ss_pred cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc
Confidence 9999999999999999999999999999999999886553 223 2678899999999999999999899999
Q ss_pred cCCCCCEEeCCCCccccc--CCccccC--CCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccC-ccccCCC
Q 038149 513 KFSNLDVLLMSRNSFEGD--VSVQLSN--LEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIP-NALLQSS 586 (844)
Q Consensus 513 ~l~~L~~L~ls~n~l~~~--~~~~l~~--l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p-~~l~~l~ 586 (844)
.+++|++|++++|.+... .+..+.. .+.|+.|++++|++.+..+..+ .+++|+.|++++|.+++.+| ..+..++
T Consensus 351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~ 430 (680)
T 1ziw_A 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430 (680)
T ss_dssp TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT
T ss_pred cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc
Confidence 999999999999986432 2223332 3689999999999998888766 89999999999999998776 7899999
Q ss_pred CCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccc--ccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccC
Q 038149 587 QLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQ--GNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKG 664 (844)
Q Consensus 587 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~ 664 (844)
+|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++..|..|.+
T Consensus 431 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-------- 502 (680)
T 1ziw_A 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG-------- 502 (680)
T ss_dssp TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc--------
Confidence 9999999999999888999999999999999999987 578999999999999999999999777776765
Q ss_pred cccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCC--------CchhhhccccCeEe
Q 038149 665 NYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI--------PSEIGYLGEIHALN 736 (844)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i--------p~~l~~l~~L~~L~ 736 (844)
+++|++|+|++|++++.. +..++.+++|++|+
T Consensus 503 ----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 503 ----------------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred ----------------------------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 457899999999998642 22478999999999
Q ss_pred ccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC-C-cCCCcCccccCCCCCC
Q 038149 737 LSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK-G-QFANFDESNYRGNPYL 814 (844)
Q Consensus 737 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~-~~~~~~~~~~~gn~~l 814 (844)
|++|+++...+..|+++++|+.|||++|++++..|..+..+++|+.|++++|++++.+|.. + .+.++....+.|||+.
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 9999999544457999999999999999999777777899999999999999999877754 2 5778889999999999
Q ss_pred cCccC
Q 038149 815 CGPAV 819 (844)
Q Consensus 815 c~~~~ 819 (844)
|+++.
T Consensus 623 c~c~~ 627 (680)
T 1ziw_A 623 CTCES 627 (680)
T ss_dssp BCCCC
T ss_pred cCCcc
Confidence 98763
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.5e-55 Score=510.24 Aligned_cols=539 Identities=22% Similarity=0.179 Sum_probs=370.6
Q ss_pred CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149 128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207 (844)
Q Consensus 128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 207 (844)
++++.++..++. +|..+. +.+++|+|++|.++. +++..|.++++|++|+|++|+++ .+.+..|.++++|++|+|
T Consensus 15 ~~~~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 15 KTYNCENLGLNE-IPGTLP--NSTECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp TEEECTTSCCSS-CCTTSC--TTCCEEECTTCCCSE--ECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred ceEECCCCCccc-CcCCCC--CcCcEEEccCCccCc--CChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeC
Confidence 467777766643 344343 256777777777743 33356677777777777777766 344455677777777777
Q ss_pred cCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCcccc
Q 038149 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVE 287 (844)
Q Consensus 208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~ 287 (844)
++|.+++..|.+|+++++|++|++++|.+++ ++...++++++|++|++++|.+.+...
T Consensus 89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~--------------------- 146 (606)
T 3t6q_A 89 TANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKL--------------------- 146 (606)
T ss_dssp TTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCC---------------------
T ss_pred CCCcccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCc---------------------
Confidence 7777766666667777777777777777663 322556666666666666666654211
Q ss_pred CCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCC--EEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCC
Q 038149 288 TENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFR--YIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLP 365 (844)
Q Consensus 288 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~ 365 (844)
..+..+.+|++|++++|.+++..+..+..+++|+ .|++++|.+.+..|..+. .
T Consensus 147 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~--~-------------------- 201 (606)
T 3t6q_A 147 ---PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD--S-------------------- 201 (606)
T ss_dssp ---CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT--T--------------------
T ss_pred ---ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh--h--------------------
Confidence 1122234566666677777766677777777777 777777777765554431 2
Q ss_pred CCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCC--
Q 038149 366 NSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCV-- 443 (844)
Q Consensus 366 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-- 443 (844)
.+|++|++++|. .++..+. .+..+....+....+.+ +... .++...+..+.
T Consensus 202 ---~~L~~L~l~~~~---~~~~~~~-~l~~~~l~~l~~~~~~~-----------~~~~---------~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 202 ---AVFQSLNFGGTQ---NLLVIFK-GLKNSTIQSLWLGTFED-----------MDDE---------DISPAVFEGLCEM 254 (606)
T ss_dssp ---CEEEEEECTTCS---CHHHHHH-HTTTCEEEEEECCCCTT-----------SCCC---------CCCGGGGGGGGGS
T ss_pred ---ccccccccCCch---hHHHHhh-hccccchhheechhhcc-----------cccc---------ccChhHhchhhcC
Confidence 234444444443 1122221 13333322222221111 0000 11112222222
Q ss_pred CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149 444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS 523 (844)
Q Consensus 444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls 523 (844)
+|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 5666666666666665556666667777777777666 456666667777777777777776666667777777777777
Q ss_pred CCcccccCCc-cccCCCCCCEEecCCCcCcccC--CCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCC
Q 038149 524 RNSFEGDVSV-QLSNLEVARILDISENKLYGPL--EFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFS 599 (844)
Q Consensus 524 ~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~--~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 599 (844)
+|.+.+.+|. .+..+++|++|++++|.+.+.. +..+ .+++|++|++++|++++..|..+..+++|++|++++|++.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 7777655544 3677777777777777776654 3333 6778888888888888788888889999999999999998
Q ss_pred cccch-hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCC---CchhhccccccccCcccccccccCC
Q 038149 600 GNIAH-LINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPI---PSCFTNISLWMEKGNYYNSTLSLAL 675 (844)
Q Consensus 600 ~~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~~~~~~~~~~~~~~~~~ 675 (844)
+..+. .+..+++|++|++++|++++..|..+..+++|+.|++++|++++.. +..+..
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~------------------- 474 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT------------------- 474 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG-------------------
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc-------------------
Confidence 77654 4888999999999999999888888999999999999999987622 223332
Q ss_pred CcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccC
Q 038149 676 PAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKM 755 (844)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 755 (844)
+++|++|+|++|++++..|..++.+++|++|+|++|++++.+|..+.++++
T Consensus 475 -----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 475 -----------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp -----------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred -----------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 568899999999999888999999999999999999999999999999999
Q ss_pred CCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCC
Q 038149 756 TESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN 796 (844)
Q Consensus 756 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 796 (844)
| .|++++|++++.+|..+..+++|+++++++|++.+.++.
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9 999999999998888899999999999999999987764
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-53 Score=500.55 Aligned_cols=523 Identities=21% Similarity=0.195 Sum_probs=317.6
Q ss_pred CCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCC
Q 038149 98 ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNL 177 (844)
Q Consensus 98 ~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 177 (844)
++++|++++|.++++.+ ..|+++++|++|+|++|.+.+..|..|+++++|++|+|++|.++. +++..|+++++|
T Consensus 34 ~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L 107 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQN----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF--MAETALSGPKAL 107 (606)
T ss_dssp TCCEEECTTCCCSEECT----TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE--ECTTTTSSCTTC
T ss_pred cCcEEEccCCccCcCCh----hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc--cChhhhcccccc
Confidence 67888888888777665 567777788888888887777777777777777777777777743 333567777777
Q ss_pred CEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCC--eEe
Q 038149 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLE--YLS 255 (844)
Q Consensus 178 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~--~L~ 255 (844)
++|++++|+++ .+++..++++++|++|++++|.+++..+..+..+++|++|++++|.++ .++...++.+++|+ +|+
T Consensus 108 ~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 108 KHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp CEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEE
T ss_pred cEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEe
Confidence 77777777776 343445677777777777777776644344444777777777777776 33335666666666 666
Q ss_pred cCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccc
Q 038149 256 LFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVD 335 (844)
Q Consensus 256 L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 335 (844)
+++|.+.+..+. .+...+|++|++++|. ..+..+..+..++...+....+.
T Consensus 186 l~~n~l~~~~~~-------------------------~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~- 236 (606)
T 3t6q_A 186 LNGNDIAGIEPG-------------------------AFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE- 236 (606)
T ss_dssp CTTCCCCEECTT-------------------------TTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT-
T ss_pred cCCCccCccChh-------------------------HhhhccccccccCCch---hHHHHhhhccccchhheechhhc-
Confidence 666666543331 1222234555555543 23333333333332222211111
Q ss_pred cCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCcccc
Q 038149 336 TFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMG 415 (844)
Q Consensus 336 ~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 415 (844)
.+....+.. ....... -.+|++|++++|.+++..+..+.
T Consensus 237 ----------------------------------~~~~~~i~~-----~~~~~l~--~~~L~~L~l~~n~l~~~~~~~~~ 275 (606)
T 3t6q_A 237 ----------------------------------DMDDEDISP-----AVFEGLC--EMSVESINLQKHYFFNISSNTFH 275 (606)
T ss_dssp ----------------------------------TSCCCCCCG-----GGGGGGG--GSEEEEEECTTCCCSSCCTTTTT
T ss_pred ----------------------------------cccccccCh-----hHhchhh--cCceeEEEeecCccCccCHHHhc
Confidence 000111111 1111111 12567777777777766666677
Q ss_pred ccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccc-cccCCCCCc
Q 038149 416 YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEV-GLLNASSLY 494 (844)
Q Consensus 416 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 494 (844)
.+++|++|++++|.++ .+|..+ ..+++|++|++++|++.+..+..+..+++|++|++++|.+.+.++. .+..+++|+
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred cccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 7777777777777765 565543 4566666666666666655555666666666666666666544433 255566666
Q ss_pred EEEccCcccCcCC--ChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCC
Q 038149 495 VLDVSNNMLSGQL--PRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNN 572 (844)
Q Consensus 495 ~L~ls~n~l~~~~--p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n 572 (844)
+|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+.
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------- 418 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ--------------- 418 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC---------------
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc---------------
Confidence 6666666665443 44555666666666666666555555555555555555555555433222
Q ss_pred ccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc---CCcccCCCCCCCEEEcCCCccccC
Q 038149 573 SLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN---IPEPLCHLRKLAIVDISYNTLNGP 649 (844)
Q Consensus 573 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~ 649 (844)
..+..+++|++|++++|.+++..|..++.+++|++|++++|++++. .+..+..+++|+.|++++|++++.
T Consensus 419 -------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 419 -------SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp -------CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred -------hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 2255566666666666666665666666666666666666666542 224566667777777777777666
Q ss_pred CCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhc
Q 038149 650 IPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYL 729 (844)
Q Consensus 650 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 729 (844)
.|..|++ +++|++|||++|++++.+|..+..+
T Consensus 492 ~~~~~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 492 DQHAFTS------------------------------------------------LKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp CTTTTTT------------------------------------------------CTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred Chhhhcc------------------------------------------------ccCCCEEECCCCccCcCChhHhCcc
Confidence 6665544 3456777777777777777777777
Q ss_pred cccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCC
Q 038149 730 GEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP 771 (844)
Q Consensus 730 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 771 (844)
+.| +|+|++|++++.+|..++.+++|+.|++++|.+++..+
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 777 77777777777777777777777777777777776544
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-53 Score=501.05 Aligned_cols=520 Identities=21% Similarity=0.173 Sum_probs=268.2
Q ss_pred CCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCC
Q 038149 97 QELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRN 176 (844)
Q Consensus 97 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 176 (844)
+++++|++++|.+++..+ ..+.++++|++|++++|.+++..|..|+++++|++|+|++|.++. +++..|+++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS----YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS--FSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC--CCTTSSTTCTT
T ss_pred CCcCEEECCCCCcCEeCh----hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc--cChhhcCCccc
Confidence 455666666665555544 345555555555555555555555555555555555555555532 22234455555
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCc-CCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCC---
Q 038149 177 LEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDG-LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLE--- 252 (844)
Q Consensus 177 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~--- 252 (844)
|++|++++|.++ .+++..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..| ..++.+++|+
T Consensus 106 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~~l 183 (606)
T 3vq2_A 106 LENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLRENPQVN 183 (606)
T ss_dssp CCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHHHCTTCC
T ss_pred CCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-hhhhhhhcccccc
Confidence 555555555544 2232334445555555555554443 234444444444444444444442222 3333322222
Q ss_pred -eEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCC-cCcChhhhcCCCCCEEEccC
Q 038149 253 -YLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNIS-GTIPRFLQYQYDFRYIDLSD 330 (844)
Q Consensus 253 -~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~ 330 (844)
+|++++|.+. ......+...+|++|++++|.+. +..|..+.
T Consensus 184 ~~L~l~~n~l~-------------------------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~------------ 226 (606)
T 3vq2_A 184 LSLDMSLNPID-------------------------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ------------ 226 (606)
T ss_dssp CEEECTTCCCC-------------------------EECTTTTTTCEEEEEEEESCCSCHHHHHHHHH------------
T ss_pred ceeeccCCCcc-------------------------eeCcccccCceeeeeeccCCccchhHHHHHhc------------
Confidence 3333333332 11111222223444444444443 22333444
Q ss_pred CcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEc-cCCcCCCC
Q 038149 331 NNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDM-SQNSFEGS 409 (844)
Q Consensus 331 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L-s~n~l~~~ 409 (844)
+++.++.+.+..+.+.... .+.. +.+..+..... -.++.+++ ..+.+.+.
T Consensus 227 -------------~l~~L~~l~l~~~~~~~~~-------~l~~-------~~~~~~~~l~~--l~l~~l~l~~~~~~~~~ 277 (606)
T 3vq2_A 227 -------------NLAGLHVHRLILGEFKDER-------NLEI-------FEPSIMEGLCD--VTIDEFRLTYTNDFSDD 277 (606)
T ss_dssp -------------TTTTCEEEEEEEECCTTSC-------CCSC-------CCGGGGTTGGG--SEEEEEEECCCTTCCGG
T ss_pred -------------cccccccccccccccccCC-------cccc-------cChHHhhhhhh--ccHhheecccccccccc
Confidence 4444444443332222110 0000 00011111111 13445555 44555555
Q ss_pred CCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccC
Q 038149 410 IPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLN 489 (844)
Q Consensus 410 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 489 (844)
+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|
T Consensus 278 ~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n------------ 338 (606)
T 3vq2_A 278 IVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMN------------ 338 (606)
T ss_dssp GGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESC------------
T ss_pred ccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCC------------
Confidence 554 555666666666666653 344 234445555555555555 2333 22 4444444444444
Q ss_pred CCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccccc--CCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEE
Q 038149 490 ASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGD--VSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYL 567 (844)
Q Consensus 490 l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~--~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L 567 (844)
+..+.+ .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+
T Consensus 339 ------------~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-------------- 390 (606)
T 3vq2_A 339 ------------KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-------------- 390 (606)
T ss_dssp ------------SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--------------
T ss_pred ------------cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc--------------
Confidence 332222 233445555555555554433 24444444445544444444331
Q ss_pred ECCCCccccccCccccCCCCCCEEECCCCcCCcccc-hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCcc
Q 038149 568 FPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA-HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTL 646 (844)
Q Consensus 568 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 646 (844)
+|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+..+++|+.|++++|++
T Consensus 391 ----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 391 ----------MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp ----------ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred ----------chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 23334444555555555555554444 4455555666666666666655566666666666666666666
Q ss_pred ccC-CCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCch
Q 038149 647 NGP-IPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSE 725 (844)
Q Consensus 647 ~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 725 (844)
++. +|..++. +++|++|+|++|++++.+|..
T Consensus 461 ~~~~~~~~~~~------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 461 KDNTLSNVFAN------------------------------------------------TTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp GGGEECSCCTT------------------------------------------------CTTCCEEECTTSCCCEECTTT
T ss_pred CCcchHHhhcc------------------------------------------------CCCCCEEECCCCcCCccChhh
Confidence 652 4444443 345667777777777777777
Q ss_pred hhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCC-CCCEEEccCCcccccCCC
Q 038149 726 IGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS-FLAIFNVSYNNLSGTVPN 796 (844)
Q Consensus 726 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip~ 796 (844)
++.+++|++|+|++|++++.+|..++++++|+.|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 788888888888888888888888888888888888888888 6777788886 588888888888877764
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.6e-53 Score=494.20 Aligned_cols=541 Identities=19% Similarity=0.170 Sum_probs=369.9
Q ss_pred CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149 128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207 (844)
Q Consensus 128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 207 (844)
++++.+++.++.. |..+. ++|++|+|++|.++. ++...|.++++|++|++++|.++ .+++..|.++++|++|+|
T Consensus 14 ~~~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 14 ITYQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TEEECTTSCCSSC-CTTSC--TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CceEccCCCcccC-CCCCC--CCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeEC
Confidence 4566666666432 22222 455555555555532 22234444455555555554444 232333444444444444
Q ss_pred cCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCcccc
Q 038149 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVE 287 (844)
Q Consensus 208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~ 287 (844)
++|.+++..|.+|+++++|++|++++|.+++ ++...++++++|++|++++|
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n---------------------------- 138 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHN---------------------------- 138 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSS----------------------------
T ss_pred CCCcccccChhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCC----------------------------
Confidence 4444444444444444444444444444442 22133444444444444443
Q ss_pred CCCCCCCCCCcccEEEccCCCCCc-CcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCC
Q 038149 288 TENFPWLPKFQLKVLNLRHCNISG-TIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPN 366 (844)
Q Consensus 288 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 366 (844)
.+.+ .+|..++++++|++|++++|++++..|..+. .+.+|+
T Consensus 139 --------------------~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~----------------- 180 (606)
T 3vq2_A 139 --------------------FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENP----------------- 180 (606)
T ss_dssp --------------------CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH-HHHHCT-----------------
T ss_pred --------------------cccceechHhHhhcCCCCEEEccCCcceecChhhhh-hhhccc-----------------
Confidence 3332 3577888888999999999988876555433 222111
Q ss_pred CCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCC-CCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCC
Q 038149 367 SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFE-GSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSL 445 (844)
Q Consensus 367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 445 (844)
..+.+|++++|.+.+. +...+. ..+|++|++++|.++ +..|..+..++.|+.+++..+.+.+.. .+
T Consensus 181 --~~l~~L~l~~n~l~~~-~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~---------~l 247 (606)
T 3vq2_A 181 --QVNLSLDMSLNPIDFI-QDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER---------NL 247 (606)
T ss_dssp --TCCCEEECTTCCCCEE-CTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC---------CC
T ss_pred --cccceeeccCCCccee-Cccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCC---------cc
Confidence 1244566666666533 322222 235666666666554 234445555555555555433332100 00
Q ss_pred cEEeCcCcccCCcCCccccCCCCcCEecC-CCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCC
Q 038149 446 EFMNLSHNYFDGQIFPKYMNLAKLVFLFL-NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR 524 (844)
Q Consensus 446 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~ 524 (844)
.. +....+..+..+ .++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|++|++++
T Consensus 248 ~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 248 EI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIR 316 (606)
T ss_dssp SC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEES
T ss_pred cc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEccc
Confidence 00 000111112222 4556666 66777777776 778888888888888886 455 778888899999999
Q ss_pred CcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccc--cCccccCCCCCCEEECCCCcCCccc
Q 038149 525 NSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGT--IPNALLQSSQLTTLDLRDNEFSGNI 602 (844)
Q Consensus 525 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~ 602 (844)
|.+ +.+| .+ .+++|++|++++|+..+.. ....+++|++|++++|.+++. +|..+..+++|++|++++|.+++ +
T Consensus 317 n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~ 391 (606)
T 3vq2_A 317 CQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-M 391 (606)
T ss_dssp CCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-E
T ss_pred ccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-c
Confidence 888 5777 45 8888999999988666555 233788999999999999866 48899999999999999999985 6
Q ss_pred chhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccc
Q 038149 603 AHLINEDSNLRALLLRGNNLQGNIP-EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNR 681 (844)
Q Consensus 603 ~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 681 (844)
|..+..+++|++|++++|++.+..| ..+..+++|+.|++++|++++..|..+.+
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------- 446 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG------------------------- 446 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-------------------------
Confidence 6889999999999999999998887 68999999999999999999888888765
Q ss_pred ccccceeeeeeeccccccccccccccceEEEeecCcccC-CCCchhhhccccCeEeccCcccccccCcccccccCCCEEe
Q 038149 682 ESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG-DIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMD 760 (844)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 760 (844)
+++|++|++++|++++ .+|..++.+++|++|+|++|++++.+|..|+++++|++|+
T Consensus 447 -----------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 447 -----------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp -----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred -----------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 4688999999999998 4799999999999999999999999999999999999999
Q ss_pred CCCCcccccCCccccCCCCCCEEEccCCcccccCCCC-CcCC-CcCccccCCCCCCcCccC
Q 038149 761 LSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK-GQFA-NFDESNYRGNPYLCGPAV 819 (844)
Q Consensus 761 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~-~~~~~~~~gn~~lc~~~~ 819 (844)
|++|++++.+|..+..+++|++|++++|+++ .+|.. ..+. .+....+.|||..|++++
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999999999999999999999 56654 4443 478889999999998764
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-52 Score=506.07 Aligned_cols=539 Identities=18% Similarity=0.177 Sum_probs=351.7
Q ss_pred cccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCCh-hhhcCC
Q 038149 170 GLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPL-SVIANL 248 (844)
Q Consensus 170 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~l~~l 248 (844)
.|.++++|++|+|++|...+.+++..|.++++|++|+|++|.+++..|.+|+++++|++|+|++|.+++.+|. ..++++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 4444444444444444333344344455555555555555555555555555555555555555555543331 124555
Q ss_pred CCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcC--CCCCEE
Q 038149 249 TSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQ--YDFRYI 326 (844)
Q Consensus 249 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L 326 (844)
++|++|++++|.+.+..+...++++++|++ |++++|.+++..+..+..+ ++|+.|
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~-----------------------L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKS-----------------------IDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCE-----------------------EEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCE-----------------------EECCCCcCCeeCHHHcccccCCccceE
Confidence 555555555555544333223333333332 2233333333344444444 556666
Q ss_pred EccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcC--CCCccEEEccCC
Q 038149 327 DLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLI--LPELVYLDMSQN 404 (844)
Q Consensus 327 ~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~--l~~L~~L~Ls~n 404 (844)
++++|.+.+..|..+. .+++ +.....|++|++++|.+.+.++..+... ...++.+.++.+
T Consensus 180 ~L~~n~l~~~~~~~~~-~~~~-----------------~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWG-KCMN-----------------PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp EECCSBSCCCCCCCCC-SSSC-----------------TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred ECCCCccccccccchh-hcCC-----------------ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 6666665554443221 1100 0011235555555555555555444332 245666666644
Q ss_pred cCCCCCCccccccccCcEEeccCCcCCCCCChhhhhc--CCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCccc
Q 038149 405 SFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTS--CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGR 482 (844)
Q Consensus 405 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 482 (844)
.+... +..+.+.+ .....+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus 242 ~~~~~---------------~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 242 IMGAG---------------FGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp CCBCS---------------SSCSSSTT-GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred ccccc---------------ccccccCC-CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC
Confidence 33211 11222321 11222233 36889999999998888888888999999999999999888
Q ss_pred ccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCC
Q 038149 483 LEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHS 562 (844)
Q Consensus 483 ~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~ 562 (844)
.+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.. .++
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~ 381 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIP 381 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCC
T ss_pred ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCC
Confidence 8888889999999999999998888888999999999999999998888888899999999999999887432 267
Q ss_pred CCcEEECCCCccccccCccccCCCCCCEEECCCCcCCccc-chhhhCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEE
Q 038149 563 SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI-AHLINEDSNLRALLLRGNNLQGNIPE-PLCHLRKLAIVD 640 (844)
Q Consensus 563 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~ 640 (844)
+|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+..+++|++|+|++|++++..+. .+..+++|+.|+
T Consensus 382 ~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~ 457 (844)
T 3j0a_A 382 SIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457 (844)
T ss_dssp SCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCE
T ss_pred CcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccccc
Confidence 8999999999988 55544 467899999999998643 34466889999999999999865443 456688999999
Q ss_pred cCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccC
Q 038149 641 ISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG 720 (844)
Q Consensus 641 Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g 720 (844)
+++|.+++..+..+.. -....+++|+.|||++|++++
T Consensus 458 Ls~N~l~~~~~~~~~~-------------------------------------------~~~~~l~~L~~L~Ls~N~l~~ 494 (844)
T 3j0a_A 458 LGENMLQLAWETELCW-------------------------------------------DVFEGLSHLQVLYLNHNYLNS 494 (844)
T ss_dssp EESCCCSSSCCSCCCS-------------------------------------------SCSSCBCCEECCCCCHHHHTT
T ss_pred CCCCccccccccccch-------------------------------------------hhhcCcccccEEECCCCcccc
Confidence 9999987433221100 000115678899999999998
Q ss_pred CCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcC
Q 038149 721 DIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQF 800 (844)
Q Consensus 721 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 800 (844)
.+|..+..+++|+.|+|++|+|++..|..+. ++|+.|||++|++++.+|..+. +|+.+++++|++.+.++..
T Consensus 495 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~--- 566 (844)
T 3j0a_A 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS--- 566 (844)
T ss_dssp CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC---
T ss_pred cChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH---
Confidence 8888899999999999999999977777666 8899999999999998887754 6889999999998877643
Q ss_pred CCcCccccCCCCCCcCccCCCCCCC
Q 038149 801 ANFDESNYRGNPYLCGPAVRKNCSS 825 (844)
Q Consensus 801 ~~~~~~~~~gn~~lc~~~~~~~c~~ 825 (844)
.|......+|..+||.+....|..
T Consensus 567 -~f~~~~~~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 567 -TFINWLNHTNVTIAGPPADIYCVY 590 (844)
T ss_dssp -SHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred -HHHHHHHhcCcccccccccCccCC
Confidence 222222345666677665556754
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-50 Score=491.20 Aligned_cols=536 Identities=19% Similarity=0.183 Sum_probs=400.4
Q ss_pred CEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCC-cccccCCCCCCEEE
Q 038149 152 TSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL-PQCLSNLTYLRVLD 230 (844)
Q Consensus 152 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 230 (844)
+..+.+++.++. +|. -.++|++|+|++|.++ .+.+..|.++++|++|+|++|...+.+ |.+|+++++|++|+
T Consensus 7 ~~~dcs~~~L~~--vP~----lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 7 RIAFYRFCNLTQ--VPQ----VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp EEEEESCCCSSC--CCS----SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred eEEEccCCCCCC--CCC----CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 356667777754 552 3467888888888877 444456778888888888887544443 67778888888888
Q ss_pred CcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChh-hhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCC
Q 038149 231 LSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLS-VLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNI 309 (844)
Q Consensus 231 Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~-~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l 309 (844)
|++|.+++..| ..|+++++|++|++++|.+.+.++.. .+.+++ +|++|++++|.+
T Consensus 80 Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~-----------------------~L~~L~Ls~N~l 135 (844)
T 3j0a_A 80 LGSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-----------------------ALTRLDLSKNQI 135 (844)
T ss_dssp CTTCCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS-----------------------SCCEEEEESCCC
T ss_pred CCCCcCcccCH-hHccCCcccCEeeCcCCCCCcccccCccccccC-----------------------CCCEEECCCCcc
Confidence 88888775445 77778888888888888777644321 234444 455556666666
Q ss_pred CcCcC-hhhhcCCCCCEEEccCCcccccCchhHhhcC--CCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCC
Q 038149 310 SGTIP-RFLQYQYDFRYIDLSDNNLVDTFPTWLLQNN--TKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLP 386 (844)
Q Consensus 310 ~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p 386 (844)
++..+ ..|+++++|++|++++|.+.+..+..+. .+ ++|+ .|+++.|.+.+..|
T Consensus 136 ~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~-----------------------~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLS-----------------------FFSLAANSLYSRVS 191 (844)
T ss_dssp CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSC-----------------------CCEECCSBSCCCCC
T ss_pred cccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccc-----------------------eEECCCCccccccc
Confidence 65543 5678888888888888888777666553 22 3343 34444444433333
Q ss_pred hhhhcCCC------CccEEEccCCcCCCCCCcccccc---ccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCC
Q 038149 387 ENFGLILP------ELVYLDMSQNSFEGSIPPSMGYM---ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG 457 (844)
Q Consensus 387 ~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 457 (844)
..+.. ++ .|++|++++|.+++.++..+... ++++.+.++.+.+... +..+.+.+
T Consensus 192 ~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~----------------~~~~~l~~ 254 (844)
T 3j0a_A 192 VDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG----------------FGFHNIKD 254 (844)
T ss_dssp CCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS----------------SSCSSSTT
T ss_pred cchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc----------------ccccccCC
Confidence 32221 12 36777777776666665555432 4455555554433211 11233333
Q ss_pred cCCccccCC--CCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccc
Q 038149 458 QIFPKYMNL--AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQL 535 (844)
Q Consensus 458 ~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l 535 (844)
.....|..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..|..+++|++|++++|.+++..|..+
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 333344443 789999999999998889999999999999999999999989999999999999999999998889999
Q ss_pred cCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCE
Q 038149 536 SNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRA 614 (844)
Q Consensus 536 ~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 614 (844)
..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+++ ++ .+++|+.|++++|+++ .+|.. ..+++.
T Consensus 335 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~ 405 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANL 405 (844)
T ss_dssp SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCE
T ss_pred cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccce
Confidence 999999999999999987777656 79999999999999984 32 3789999999999998 45543 568999
Q ss_pred EEccCCcccccC-CcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeee
Q 038149 615 LLLRGNNLQGNI-PEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMA 693 (844)
Q Consensus 615 L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (844)
|++++|++++.. +..+..+++|+.|+|++|++++..+.....
T Consensus 406 L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------- 448 (844)
T 3j0a_A 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS------------------------------------- 448 (844)
T ss_dssp EECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC-------------------------------------
T ss_pred eecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc-------------------------------------
Confidence 999999998642 234568999999999999998654432110
Q ss_pred ccccccccccccccceEEEeecCccc-----CCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149 694 KNRYESYKGDVLKYMTGLDLSSNELT-----GDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768 (844)
Q Consensus 694 ~~~~~~~~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 768 (844)
.+++|+.|+|++|.++ +..|..+..+++|++|+|++|++++.+|..|.++++|+.|+|++|++++
T Consensus 449 ----------~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 449 ----------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp ----------SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred ----------cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 1467899999999997 4556778999999999999999999999999999999999999999998
Q ss_pred cCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcCccC
Q 038149 769 QIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAV 819 (844)
Q Consensus 769 ~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~ 819 (844)
..|..+. ++|+.|++++|+++|.+|.. |..+....+.|||+.|++++
T Consensus 519 l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 519 LSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred cChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 7777666 89999999999999999964 66788899999999998864
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.7e-53 Score=492.02 Aligned_cols=86 Identities=23% Similarity=0.218 Sum_probs=58.8
Q ss_pred CcHHHHHHHHHhhhcccccccccc--cccccCCCcCCCCCCCCCC---CceEecCCCCceEEEeeCcCcccCCCCCCCCC
Q 038149 11 CLDSERIGLLEIKAFIKSVSDMQY--ADAILVSWVDNRTSDCCTW---ERIKCNATTGRVMELSLDSAIQVDSDDVNDGF 85 (844)
Q Consensus 11 c~~~~~~~ll~~k~~~~~~~~~~~--~~~~l~~W~~~~~~~~C~w---~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~ 85 (844)
....|++||.+||+++....-... +.....+|+. +++||.| .||+|+.. |||++|+|+++.+ .|.+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~--~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l--~g~l---- 97 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF--NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGA--SGRV---- 97 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC--SSCGGGTTCCTTEEECTT-CCEEEEECTTSCC--EEEE----
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC--CCCcccccCCCCeEEcCC-CCEEEEEecCccc--CCcC----
Confidence 345799999999999865210000 0123568975 3799999 99999864 9999999999877 4433
Q ss_pred cccCCCCccCCCCCcEEeCCCCCC
Q 038149 86 PIINMSLFVPFQELHVLDLSDNRF 109 (844)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~Ls~n~i 109 (844)
++.|+++++|++|+|++|.+
T Consensus 98 ----p~~l~~L~~L~~L~Ls~N~~ 117 (636)
T 4eco_A 98 ----PDAIGQLTELEVLALGSHGE 117 (636)
T ss_dssp ----CGGGGGCTTCCEEESCCGGG
T ss_pred ----ChHHhcCccceEEECcCCcc
Confidence 24567777777777777754
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-50 Score=478.72 Aligned_cols=457 Identities=20% Similarity=0.234 Sum_probs=255.9
Q ss_pred CCCcHHHHHHHHHhhhcccccccccccccccCCCcCCC---CCCC--CCC------------CceEecCCCCceEEEeeC
Q 038149 9 KSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNR---TSDC--CTW------------ERIKCNATTGRVMELSLD 71 (844)
Q Consensus 9 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~---~~~~--C~w------------~gv~c~~~~~~V~~l~L~ 71 (844)
..+..+|++||++||+++.+ | +|+.+. ..+| |.| .||+|+. .+||++|+|+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~----~-------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls 331 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDG----K-------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLA 331 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTG----G-------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECT
T ss_pred cccchHHHHHHHHHHHHcCC----C-------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECc
Confidence 45667899999999999853 2 786542 1355 999 9999986 7999999999
Q ss_pred cCcccCCCCCCCCCcccCCCCccCCCCCcEEeC-CCCCCCCCCcccccc-------------------------------
Q 038149 72 SAIQVDSDDVNDGFPIINMSLFVPFQELHVLDL-SDNRFEGWEENKAYN------------------------------- 119 (844)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~------------------------------- 119 (844)
++.+ .|.+ ++.|+++++|++|+| ++|.+.|..+.....
T Consensus 332 ~~~L--~G~i--------p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 332 GFGA--KGRV--------PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TTCC--EEEE--------CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred cCCC--CCcC--------chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 9988 4544 357899999999999 888766542210000
Q ss_pred --------------cc--CCCCCCCEEeCCC--CCCCCCchhhhcCCCCCCEEECCCCCCCCC----------------C
Q 038149 120 --------------TS--RSLKQLKILNIGY--NSFNESLVPLLTSLTSLTSLFLQGNSFSEG----------------F 165 (844)
Q Consensus 120 --------------~l--~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----------------~ 165 (844)
.+ .....++.+.+.. |.+++ +|..|+++++|++|+|++|.++.. .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00 1111222222222 45544 555666666666666666665320 1
Q ss_pred cCccccc--CCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCc-CCc-CCcccccCCC-------CCCEEECcCC
Q 038149 166 KHNKGLV--NLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENE-FDG-LLPQCLSNLT-------YLRVLDLSSN 234 (844)
Q Consensus 166 ~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~Ls~n 234 (844)
+| ..++ ++++|++|+|++|.+.+.+| ..++++++|++|+|++|+ +++ .+|..+++++ +|++|++++|
T Consensus 481 iP-~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 EN-EELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TT-SCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CC-hhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 33 2333 55555555555555544444 234555555555555554 444 4444333332 5555555555
Q ss_pred CCCCCCChh--hhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcC
Q 038149 235 KLSGNLPLS--VIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGT 312 (844)
Q Consensus 235 ~l~~~~p~~--~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~ 312 (844)
.++ .+| . .++++++|++|++++|.+. .+| .+..+.+|+.|++++|++. .
T Consensus 559 ~L~-~ip-~~~~l~~L~~L~~L~Ls~N~l~-~lp-------------------------~~~~L~~L~~L~Ls~N~l~-~ 609 (876)
T 4ecn_A 559 NLE-EFP-ASASLQKMVKLGLLDCVHNKVR-HLE-------------------------AFGTNVKLTDLKLDYNQIE-E 609 (876)
T ss_dssp CCC-BCC-CHHHHTTCTTCCEEECTTSCCC-BCC-------------------------CCCTTSEESEEECCSSCCS-C
T ss_pred cCC-ccC-ChhhhhcCCCCCEEECCCCCcc-cch-------------------------hhcCCCcceEEECcCCccc-c
Confidence 554 444 3 4555555555555555444 333 3333445666677777776 6
Q ss_pred cChhhhcCCC-CCEEEccCCcccccCchhHhhcCC--CCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhh
Q 038149 313 IPRFLQYQYD-FRYIDLSDNNLVDTFPTWLLQNNT--KLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENF 389 (844)
Q Consensus 313 ~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 389 (844)
+|..+..+++ |++|++++|++. .+|..+. .++ +|+.|++++|.+.+ .+|...
T Consensus 610 lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g-----------------------~ip~l~ 664 (876)
T 4ecn_A 610 IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGS-----------------------EGRNIS 664 (876)
T ss_dssp CCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTT-----------------------TSSSCS
T ss_pred chHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCC-----------------------ccccch
Confidence 6777777777 888888888776 5564432 221 24444444444433 222110
Q ss_pred ---h-cCCCCccEEEccCCcCCCCCCccc-cccccCcEEeccCCcCCCCCChhhhhcC-------CCCcEEeCcCcccCC
Q 038149 390 ---G-LILPELVYLDMSQNSFEGSIPPSM-GYMERLLFLDLSSNNFSRDLPKHFLTSC-------VSLEFMNLSHNYFDG 457 (844)
Q Consensus 390 ---~-~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-------~~L~~L~Ls~n~l~~ 457 (844)
. ..+++|++|++++|.++ .+|..+ ..+++|+.|++++|+++ .+|..++... ++|++|+|++|+++
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~- 741 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT- 741 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-
T ss_pred hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-
Confidence 0 01235556666666655 344433 25556666666666654 4555443322 26666666666666
Q ss_pred cCCcccc--CCCCcCEecCCCCcCcccccccccCCCCCcEEEccC------cccCcCCChhhhcCCCCCEEeCCCCcccc
Q 038149 458 QIFPKYM--NLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSN------NMLSGQLPRWIGKFSNLDVLLMSRNSFEG 529 (844)
Q Consensus 458 ~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~------n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 529 (844)
.+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|++++ |++.+.+|..+..+++|+.|++++|.+ +
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~ 819 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R 819 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-C
Confidence 4455554 66666666666666665 455566666666666655 555555555555566666666666555 4
Q ss_pred cCCccccCCCCCCEEecCCCcC
Q 038149 530 DVSVQLSNLEVARILDISENKL 551 (844)
Q Consensus 530 ~~~~~l~~l~~L~~L~ls~n~l 551 (844)
.+|..+. ++|+.|++++|++
T Consensus 820 ~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 820 KVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp BCCSCCC--SSSCEEECCSCTT
T ss_pred ccCHhhc--CCCCEEECCCCCC
Confidence 4444433 3455555555544
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-48 Score=454.90 Aligned_cols=276 Identities=17% Similarity=0.159 Sum_probs=225.4
Q ss_pred cCEecCCCC-cCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecC
Q 038149 469 LVFLFLNDN-QFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDIS 547 (844)
Q Consensus 469 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls 547 (844)
++.+++.++ .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|+++
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~ 333 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFT 333 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEE
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCc
Confidence 445555555 455556666666677777777777766 466666666 7777777777766 4443 356677777777
Q ss_pred CCcCcccCCCCCCCCCCcEEECCCCcccccc--CccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc
Q 038149 548 ENKLYGPLEFSSNHSSLRYLFPHNNSLSGTI--PNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN 625 (844)
Q Consensus 548 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 625 (844)
+|.+.+..+. ..+++|+.|++++|.+++.. |..+..+++|++|++++|++.+..+. +..+++|++|++++|++.+.
T Consensus 334 ~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 334 SNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp SCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred CCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 7777665554 46778888888888887554 77888999999999999999865555 88999999999999999987
Q ss_pred CC-cccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccc
Q 038149 626 IP-EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDV 704 (844)
Q Consensus 626 ~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (844)
.| ..+..+++|+.|++++|++++..|..+.+
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------------ 443 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------------------------------ 443 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------------------------------
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhc------------------------------------------------
Confidence 66 57889999999999999999888877765
Q ss_pred cccceEEEeecCccc-CCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEE
Q 038149 705 LKYMTGLDLSSNELT-GDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIF 783 (844)
Q Consensus 705 l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 783 (844)
+++|++|+|++|+++ +.+|..++.+++|++|+|++|++++..|..|+++++|++|++++|++++..|..+..+++|+.|
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 467899999999998 6899999999999999999999999999999999999999999999999888899999999999
Q ss_pred EccCCcccccCCCCCc
Q 038149 784 NVSYNNLSGTVPNKGQ 799 (844)
Q Consensus 784 ~ls~N~l~g~ip~~~~ 799 (844)
++++|+++|.+|....
T Consensus 524 ~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 524 WLHTNPWDCSCPRIDY 539 (570)
T ss_dssp ECCSSCBCCCTTTTHH
T ss_pred EecCCcccCCCcchHH
Confidence 9999999999997643
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-47 Score=445.34 Aligned_cols=497 Identities=22% Similarity=0.204 Sum_probs=369.6
Q ss_pred CCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCC
Q 038149 97 QELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRN 176 (844)
Q Consensus 97 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 176 (844)
+++++|++++|.++++.+ ..|.++++|++|+|++|++++..+..|+++++|++|+|++|.++. +++..|.++++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCCCCEECT----TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTT
T ss_pred ccccEEEccCCccCccCh----hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc--cCHhhhcCccc
Confidence 467777777777776655 456777777777777777777666777777777777777777643 44456777777
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCc-CCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCC----
Q 038149 177 LEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDG-LLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSL---- 251 (844)
Q Consensus 177 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L---- 251 (844)
|++|++++|+++ .++...++++++|++|++++|.+++ .+|..|+++++|++|++++|.++ .++...++.+++|
T Consensus 102 L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 102 LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp CCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCC
T ss_pred cccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhh
Confidence 777777777776 3444346677777777777777665 25666777777777777777776 3333556555555
Q ss_pred CeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCc-CcChhhhcCCCCCEEEccC
Q 038149 252 EYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISG-TIPRFLQYQYDFRYIDLSD 330 (844)
Q Consensus 252 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~ 330 (844)
++|++++|.+.+..+ ..+...+|+.|++++|.... .++..+..++.++...+..
T Consensus 180 ~~L~l~~n~l~~~~~-------------------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 180 LSLDLSLNPMNFIQP-------------------------GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp CEEECTTCCCCEECT-------------------------TTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred hhcccCCCCceecCH-------------------------HHhccCcceeEecccccccccchhhhhcCccccceeeecc
Confidence 566666666554332 12222245566666553321 2455566666666655543
Q ss_pred CcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCC-cccccCChhhhcCCCCccEEEccCCcCCCC
Q 038149 331 NNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNN-SFIGKLPENFGLILPELVYLDMSQNSFEGS 409 (844)
Q Consensus 331 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~ 409 (844)
..+.. ...++ .+....+.+. .--.++.++++.+ .+.+.+|..+.. +++|++|++++|.++ .
T Consensus 235 ~~~~~---------~~~l~--~~~~~~~~~l-----~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~ 296 (570)
T 2z63_A 235 GEFRN---------EGNLE--KFDKSALEGL-----CNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-R 296 (570)
T ss_dssp EECCC---------CSSCE--ECCTTTTGGG-----GGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-S
T ss_pred ccccC---------chhhh--hcchhhhccc-----cccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-h
Confidence 22211 00010 0111111100 0013556777777 666667776654 899999999999998 6
Q ss_pred CCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccc--cccc
Q 038149 410 IPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRL--EVGL 487 (844)
Q Consensus 410 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~ 487 (844)
+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+
T Consensus 297 l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~ 369 (570)
T 2z63_A 297 VKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD 369 (570)
T ss_dssp CCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred hhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc
Confidence 88888888 9999999999996 7775 4788999999999998876654 67899999999999998654 6778
Q ss_pred cCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCC-ccccCCCCCCEEecCCCcCcccCCCCC-CCCCCc
Q 038149 488 LNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS-VQLSNLEVARILDISENKLYGPLEFSS-NHSSLR 565 (844)
Q Consensus 488 ~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~ 565 (844)
..+++|++|++++|.+++..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+ .+++|+
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 8899999999999999865444 8999999999999999987766 568899999999999999998888766 899999
Q ss_pred EEECCCCccc-cccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149 566 YLFPHNNSLS-GTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN 644 (844)
Q Consensus 566 ~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 644 (844)
.|++++|.++ +.+|..+..+++|++|++++|++++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 9999999998 679999999999999999999999988999999999999999999999888888999999999999999
Q ss_pred ccccCCCc
Q 038149 645 TLNGPIPS 652 (844)
Q Consensus 645 ~l~~~~p~ 652 (844)
++++..|.
T Consensus 529 ~~~~~~~~ 536 (570)
T 2z63_A 529 PWDCSCPR 536 (570)
T ss_dssp CBCCCTTT
T ss_pred cccCCCcc
Confidence 99998875
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-47 Score=440.17 Aligned_cols=346 Identities=18% Similarity=0.185 Sum_probs=269.0
Q ss_pred CCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcC---CccccCCCC
Q 038149 392 ILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQI---FPKYMNLAK 468 (844)
Q Consensus 392 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~ 468 (844)
.+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..++..+++|++|++++|++++.. ......+++
T Consensus 146 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred cccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhc
Confidence 4677777778777777777777777888888888888774 566666667788888888888877642 122345677
Q ss_pred cCEecCCCCcCccccc----ccccCCCCCcEEEccCcccCcCC------ChhhhcCCCCCEEeCCCCccccc-----CCc
Q 038149 469 LVFLFLNDNQFTGRLE----VGLLNASSLYVLDVSNNMLSGQL------PRWIGKFSNLDVLLMSRNSFEGD-----VSV 533 (844)
Q Consensus 469 L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~ls~n~l~~~~------p~~l~~l~~L~~L~ls~n~l~~~-----~~~ 533 (844)
|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+.. ...+..+++|+.|.+.++.+... ++.
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~ 304 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence 8888888887775433 33456678888888888776531 12345677888888888876432 222
Q ss_pred cccCCCCCCEEecCCCcCcccCCCCC--CCCCCcEEECCCCccccccCc---cccCCCCCCEEECCCCcCCcccc--hhh
Q 038149 534 QLSNLEVARILDISENKLYGPLEFSS--NHSSLRYLFPHNNSLSGTIPN---ALLQSSQLTTLDLRDNEFSGNIA--HLI 606 (844)
Q Consensus 534 ~l~~l~~L~~L~ls~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~~--~~l 606 (844)
.+...++|+.|++++|.+. .+|... .+++|++|++++|++++.+|. .+..+++|++|++++|++++..+ ..+
T Consensus 305 ~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp HHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred hhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence 2334567899999999876 445433 588999999999999887643 47788999999999999986543 568
Q ss_pred hCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccc
Q 038149 607 NEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQR 686 (844)
Q Consensus 607 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (844)
..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+
T Consensus 384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-------------------------------- 429 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-------------------------------- 429 (549)
T ss_dssp GGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--------------------------------
T ss_pred hcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--------------------------------
Confidence 89999999999999999 788899999999999999999872 33221
Q ss_pred eeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcc
Q 038149 687 VEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL 766 (844)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 766 (844)
.++|++|||++|++++.+ +.+++|++|+|++|+|+ .+|. .+.+++|++|||++|++
T Consensus 430 ------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 430 ------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQL 485 (549)
T ss_dssp ------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCC
T ss_pred ------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCcc
Confidence 246889999999999753 47889999999999999 7887 57899999999999999
Q ss_pred cccCCccccCCCCCCEEEccCCcccccCCCC
Q 038149 767 NGQIPPELGELSFLAIFNVSYNNLSGTVPNK 797 (844)
Q Consensus 767 ~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 797 (844)
++.+|..+..+++|++|++++|+++|.+|..
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred CCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 9999999999999999999999999988853
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-46 Score=434.39 Aligned_cols=475 Identities=19% Similarity=0.152 Sum_probs=313.0
Q ss_pred CCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCC
Q 038149 97 QELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRN 176 (844)
Q Consensus 97 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 176 (844)
++|++|++++|.+++..+ ..+.++++|++|++++|++++..|..|+++++|++|+|++|.++. ++...|+++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH----GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCCCEECS----STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS--CCHHHHTTCTT
T ss_pred CCccEEECcCCccCccCh----hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc--cCHHHhccCCC
Confidence 789999999999988776 578899999999999999999888999999999999999999854 55566899999
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcC-CcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEe
Q 038149 177 LEVLDLSGNRITGSLIMQGICDLKNLVELNINENEF-DGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLS 255 (844)
Q Consensus 177 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~ 255 (844)
|++|++++|.+++.-.+..+.++++|++|++++|.+ ....+..|+++++|++|++++|.+++.+| ..++++++|++|+
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~ 178 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHLT 178 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-hhhhccccCceEe
Confidence 999999999998422234688999999999999984 44444689999999999999999997777 8899999999999
Q ss_pred cCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccc
Q 038149 256 LFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVD 335 (844)
Q Consensus 256 L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 335 (844)
+++|.+. .++...+..+++|++|++++|.+....+... .....+++|+.|++++|.+.+
T Consensus 179 l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------------------~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 179 LHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPL--------------------PVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp EECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCC--------------------SSCCCCCCCCEEEEESCEEEH
T ss_pred cccCccc-ccchhhHhhcccccEEEccCCcccccccccc--------------------chhhhhhcccceeccccccch
Confidence 9999875 4454455667777777777776655321110 111234455555555555544
Q ss_pred cCchhHh---hcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCC----
Q 038149 336 TFPTWLL---QNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEG---- 408 (844)
Q Consensus 336 ~~p~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~---- 408 (844)
..+..+. ..+++|+.+++++|.+.+...... ........+++++.|++.++.+..
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~ 299 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP------------------SESDVVSELGKVETVTIRRLHIPQFYLF 299 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC------------------CTTTCCCCCTTCCEEEEESCBCSCGGGS
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccc------------------cchhhhhhhcccccccccccccchhhhc
Confidence 4333322 123344444444443332211100 000000124555556555554432
Q ss_pred -CCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCc---cccCCCCcCEecCCCCcCccccc
Q 038149 409 -SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFP---KYMNLAKLVFLFLNDNQFTGRLE 484 (844)
Q Consensus 409 -~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~ 484 (844)
.++..+...++|+.|++++|.+. .+|..++..+++|++|++++|++.+.++. .+..+++|++|++++|++++..+
T Consensus 300 ~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 378 (549)
T 2z81_A 300 YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378 (549)
T ss_dssp CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence 11222334456677777777764 56666655666666666666666654322 24445555555555555553321
Q ss_pred --ccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCC
Q 038149 485 --VGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHS 562 (844)
Q Consensus 485 --~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~ 562 (844)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++ .... . ..+
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~------------------------~l~~-~-~~~ 431 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR------------------------VVKT-C-IPQ 431 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS------------------------CCCT-T-SCT
T ss_pred chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc------------------------cccc-h-hcC
Confidence 23444555555555555554 34444444444455444444443 2111 1 124
Q ss_pred CCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcC
Q 038149 563 SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDIS 642 (844)
Q Consensus 563 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 642 (844)
+|+.|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|+.|+++
T Consensus 432 ~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 432 TLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp TCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred CceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence 5667777777666532 46788899999999888 5665 4678899999999999998888889999999999999
Q ss_pred CCccccCCC
Q 038149 643 YNTLNGPIP 651 (844)
Q Consensus 643 ~N~l~~~~p 651 (844)
+|++++..|
T Consensus 506 ~N~~~~~~~ 514 (549)
T 2z81_A 506 TNPWDCSCP 514 (549)
T ss_dssp SSCBCCCHH
T ss_pred CCCccCCCc
Confidence 999988777
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-47 Score=447.50 Aligned_cols=431 Identities=17% Similarity=0.260 Sum_probs=344.3
Q ss_pred cccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcc------cc------cCchhHhhcCCCCcEEEcCCCcccccccCC
Q 038149 298 QLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNL------VD------TFPTWLLQNNTKLEIMFLFNNFLTGNLQLP 365 (844)
Q Consensus 298 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l------~~------~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~ 365 (844)
+++.|+|+++.+.|.+|..++++++|++|++++|.+ .+ .+|.... ..++ +++.++.+.+.....
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~---~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK---QKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHH---HHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHH---HHHH-hhHHHhhhccCchhh
Confidence 688999999999999999999999999999999976 22 3333221 2222 333333332211100
Q ss_pred --------------------CCCCCCCEEEcc--CCcccccCChhhhcCCCCccEEEccCCcCCCC--------------
Q 038149 366 --------------------NSKRNLPHLVIS--NNSFIGKLPENFGLILPELVYLDMSQNSFEGS-------------- 409 (844)
Q Consensus 366 --------------------~~~~~L~~L~l~--~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~-------------- 409 (844)
.....++.+.+. .|.++| +|..++. +++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence 011223333332 578887 8888765 89999999999999875
Q ss_pred ---CCcccc--ccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcc-cCC-cCCccccCC------CCcCEecCCC
Q 038149 410 ---IPPSMG--YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNY-FDG-QIFPKYMNL------AKLVFLFLND 476 (844)
Q Consensus 410 ---~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~L~~ 476 (844)
+|..++ ++++|++|++++|.+.+.+|..+ ..+++|++|++++|+ +++ .+|..+..+ ++|++|++++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 888888 99999999999999888888765 688999999999998 887 778777765 8999999999
Q ss_pred CcCcccccc--cccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCC-CCEEecCCCcCcc
Q 038149 477 NQFTGRLEV--GLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEV-ARILDISENKLYG 553 (844)
Q Consensus 477 n~l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~-L~~L~ls~n~l~~ 553 (844)
|+++ .+|. .+..+++|++|++++|+++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.+.
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 9998 7787 88899999999999999998888 8888999999999999988 77888888888 999999999988
Q ss_pred cCCCCC-C--CCCCcEEECCCCccccccCcccc-------CCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccc
Q 038149 554 PLEFSS-N--HSSLRYLFPHNNSLSGTIPNALL-------QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQ 623 (844)
Q Consensus 554 ~~~~~~-~--~~~L~~L~l~~n~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 623 (844)
.+|..+ . +++|+.|++++|.+++.+|..+. .+++|++|++++|++++..+..+..+++|++|+|++|+++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 566554 3 34799999999999988888888 7788999999999998554455667899999999999998
Q ss_pred ccCCcccCCC--------CCCCEEEcCCCccccCCCchhh--ccccccccCcccccccccCCCcccccccccceeeeeee
Q 038149 624 GNIPEPLCHL--------RKLAIVDISYNTLNGPIPSCFT--NISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMA 693 (844)
Q Consensus 624 ~~~p~~l~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (844)
.+|..+... ++|+.|+|++|+++ .+|..+. .
T Consensus 471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~------------------------------------- 511 (636)
T 4eco_A 471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT------------------------------------- 511 (636)
T ss_dssp -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT-------------------------------------
T ss_pred -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc-------------------------------------
Confidence 666654432 28999999999988 6776654 3
Q ss_pred ccccccccccccccceEEEeecCcccCCCCchhhhccccCeEec------cCcccccccCcccccccCCCEEeCCCCccc
Q 038149 694 KNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNL------SNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767 (844)
Q Consensus 694 ~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 767 (844)
+++|+.|+|++|++++ +|..++.+++|++|+| ++|++.+.+|..++++++|+.|+|++|++
T Consensus 512 -----------l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l- 578 (636)
T 4eco_A 512 -----------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI- 578 (636)
T ss_dssp -----------CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -----------CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence 5678899999999997 8999999999999999 56788889999999999999999999999
Q ss_pred ccCCccccCCCCCCEEEccCCccccc
Q 038149 768 GQIPPELGELSFLAIFNVSYNNLSGT 793 (844)
Q Consensus 768 ~~ip~~l~~l~~L~~L~ls~N~l~g~ 793 (844)
+.+|..+. ++|++|++++|++...
T Consensus 579 ~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 579 RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CccCHhHh--CcCCEEECcCCCCccc
Confidence 68888766 7899999999987643
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=422.42 Aligned_cols=439 Identities=21% Similarity=0.250 Sum_probs=228.0
Q ss_pred CCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEE
Q 038149 200 KNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVF 279 (844)
Q Consensus 200 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 279 (844)
++|++|++++|.+++..|..|.++++|++|++++|++++..| ..|+++++|++|++++|.++ .+|.. .++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~----- 90 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKLV-KISCH---PTV----- 90 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCCC-EEECC---CCC-----
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCcee-ecCcc---ccC-----
Confidence 444444444444444444444444444444444444442223 44444444444444444443 12210 111
Q ss_pred EccCccccCCCCCCCCCCcccEEEccCCCCCc-CcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcc
Q 038149 280 QLSRLQVETENFPWLPKFQLKVLNLRHCNISG-TIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358 (844)
Q Consensus 280 ~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l 358 (844)
+|++|++++|.+++ .+|..++.+++|++|++++|.+.+. .+. .
T Consensus 91 ------------------~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~-~-------------- 134 (520)
T 2z7x_B 91 ------------------NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVL-P-------------- 134 (520)
T ss_dssp ------------------CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGG-G--------------
T ss_pred ------------------CccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hcc-c--------------
Confidence 23334444444443 3567777888888888888877541 111 1
Q ss_pred cccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCc--cEEEccCCcC--CCCCCccccccc-cCcEEeccCCcCCCC
Q 038149 359 TGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPEL--VYLDMSQNSF--EGSIPPSMGYME-RLLFLDLSSNNFSRD 433 (844)
Q Consensus 359 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~l~-~L~~L~Ls~n~l~~~ 433 (844)
+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.
T Consensus 135 ----------------------------------l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~ 180 (520)
T 2z7x_B 135 ----------------------------------IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180 (520)
T ss_dssp ----------------------------------GTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCC
T ss_pred ----------------------------------cccceeeEEEeecccccccccccccccccccceEEEEeccCcchhh
Confidence 2222 4444444444 344444444333 222345555555544
Q ss_pred CChhhhhcCCCCcEEeCcCcc-------cCCcCCccccCCCCcCEecCCCCcCccccccccc---CCCCCcEEEccCccc
Q 038149 434 LPKHFLTSCVSLEFMNLSHNY-------FDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL---NASSLYVLDVSNNML 503 (844)
Q Consensus 434 ~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~ls~n~l 503 (844)
++...+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+.+..+..+. ..++|++|++++|++
T Consensus 181 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 259 (520)
T 2z7x_B 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259 (520)
T ss_dssp CCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEE
T ss_pred hhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccc
Confidence 444444444555555555443 222222 334444444444444444322111110 123455555555555
Q ss_pred CcCCChhh-----hcCCCCCEEeCCCCcccccCC-ccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccc
Q 038149 504 SGQLPRWI-----GKFSNLDVLLMSRNSFEGDVS-VQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGT 577 (844)
Q Consensus 504 ~~~~p~~l-----~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 577 (844)
+|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ +...+|+.|++++|.+.+.
T Consensus 260 ~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~--------------------~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI--------------------FSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp ESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH--------------------HHTCCCSEEEEESSCCCCC
T ss_pred cCccccchhhcccccCceeEeccccccce--ecchhhhhcc--------------------cccCceeEEEcCCCccccc
Confidence 54444444 4444444444444444 222 122111 0012344444444443321
Q ss_pred cCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccc--cCCcccCCCCCCCEEEcCCCccccCCCch-h
Q 038149 578 IPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQG--NIPEPLCHLRKLAIVDISYNTLNGPIPSC-F 654 (844)
Q Consensus 578 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~ 654 (844)
. .+..+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|.. +
T Consensus 318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 1 11345556666666666665555556666666666666666654 34455666666666666666666544442 2
Q ss_pred hccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCe
Q 038149 655 TNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHA 734 (844)
Q Consensus 655 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 734 (844)
.. +++|++|++++|++++.+|..+. ++|++
T Consensus 396 ~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~ 425 (520)
T 2z7x_B 396 SW------------------------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKV 425 (520)
T ss_dssp CC------------------------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCE
T ss_pred cc------------------------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCE
Confidence 21 34567777777777766666554 67778
Q ss_pred EeccCcccccccCcccccccCCCEEeCCCCcccccCCcc-ccCCCCCCEEEccCCcccccCC
Q 038149 735 LNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVSYNNLSGTVP 795 (844)
Q Consensus 735 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip 795 (844)
|+|++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++.++
T Consensus 426 L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 888888887 77777778888888888888887 45554 7788888888888888887665
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-43 Score=417.18 Aligned_cols=520 Identities=22% Similarity=0.201 Sum_probs=277.0
Q ss_pred CCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCC
Q 038149 98 ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNL 177 (844)
Q Consensus 98 ~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 177 (844)
++++|||++|.|+++.+ ..|.++++|++|+|++|+++++.+.+|.++++|++|+|++|+++. ++...|.++++|
T Consensus 53 ~~~~LdLs~N~i~~l~~----~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L 126 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSL 126 (635)
T ss_dssp TCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTC
T ss_pred CCCEEEeeCCCCCCCCH----HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCC
Confidence 56666666666666555 455666666666666666666555566666666666666665533 444445555555
Q ss_pred CEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcC-CcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEec
Q 038149 178 EVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGL-LPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSL 256 (844)
Q Consensus 178 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L 256 (844)
++|+|++|+++ .++...|+++++|++|++++|.+++. .|..++.+++|++|++++|++++..+ ..+..+.+++.
T Consensus 127 ~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~l~~--- 201 (635)
T 4g8a_A 127 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPL--- 201 (635)
T ss_dssp CEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTT---
T ss_pred CEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-ccccchhhhhh---
Confidence 55555555555 34434455555555555555555432 34445555555555555555542222 33332222111
Q ss_pred CCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCccccc
Q 038149 257 FDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDT 336 (844)
Q Consensus 257 ~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 336 (844)
. ...++++.|.+....+..+ ....++.+++.+|.....
T Consensus 202 ------------------~-----------------------~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~ 239 (635)
T 4g8a_A 202 ------------------L-----------------------NLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLN 239 (635)
T ss_dssp ------------------C-----------------------CCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHH
T ss_pred ------------------h-----------------------hhhhhcccCcccccCcccc-cchhhhhhhhhccccccc
Confidence 0 1122222333322222211 112233344444433322
Q ss_pred CchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCC---CCCCcc
Q 038149 337 FPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFE---GSIPPS 413 (844)
Q Consensus 337 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~---~~~~~~ 413 (844)
++...+..+..++...+..+...... .++. .....+ ..+..+...++..+... ..++..
T Consensus 240 ~~~~~~~~l~~l~~~~l~~~~~~~~~-------~l~~----------~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~ 301 (635)
T 4g8a_A 240 VMKTCIQGLAGLEVHRLVLGEFRNEG-------NLEK----------FDKSAL-EGLCNLTIEEFRLAYLDYYLDGIIDL 301 (635)
T ss_dssp HHHHHHHTTTTCEEEEEEEECCTTSC-------CCSC----------CCTTTT-GGGGGSEEEEEEEECCCSCEEECTTT
T ss_pred ccchhhcCCccccccccccccccccc-------cccc----------cccccc-ccccchhhhhhhhhhhcccccchhhh
Confidence 33333334444443333222211110 0000 000000 01223333333332221 122334
Q ss_pred ccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCC
Q 038149 414 MGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSL 493 (844)
Q Consensus 414 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 493 (844)
+..+.+++.+++.++.+.+ ++. +....+++.|++.+|.+....+. .++.|+.+++.+|.+.... ....+++|
T Consensus 302 ~~~~~~l~~l~~~~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L 373 (635)
T 4g8a_A 302 FNCLTNVSSFSLVSVTIER-VKD--FSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSL 373 (635)
T ss_dssp TGGGTTCSEEEEESCEEEE-CGG--GGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTC
T ss_pred hhhhccccccccccccccc-ccc--cccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--cccccccc
Confidence 4455566666666666542 222 23455666666666665543322 2344555555555544221 22344555
Q ss_pred cEEEccCcccCc--CCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCC
Q 038149 494 YVLDVSNNMLSG--QLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHN 571 (844)
Q Consensus 494 ~~L~ls~n~l~~--~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~ 571 (844)
+.+++++|.+.. ..+..+..+.+|+.+++..|.... .+..+..+++ |+.+++..
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~-----------------------L~~l~l~~ 429 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQ-----------------------LEHLDFQH 429 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTT-----------------------CCEEECTT
T ss_pred ccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccccc-----------------------ccchhhhh
Confidence 555555555432 233444445555555555554432 2223444444 44444444
Q ss_pred Ccccccc-CccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccc-ccCCcccCCCCCCCEEEcCCCccccC
Q 038149 572 NSLSGTI-PNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQ-GNIPEPLCHLRKLAIVDISYNTLNGP 649 (844)
Q Consensus 572 n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ 649 (844)
+...... +..+..+++++.+++++|.+.+..+..+..++.|++|++++|++. +.+|..+..+++|++|+|++|++++.
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 4443332 234566677777777777777777777777777777777777643 45677777888888888888888877
Q ss_pred CCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhc
Q 038149 650 IPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYL 729 (844)
Q Consensus 650 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 729 (844)
.|..|.+ +++|++|+|++|+|++..|..+..+
T Consensus 510 ~~~~f~~------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 510 SPTAFNS------------------------------------------------LSSLQVLNMSHNNFFSLDTFPYKCL 541 (635)
T ss_dssp CTTTTTT------------------------------------------------CTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred ChHHHcC------------------------------------------------CCCCCEEECCCCcCCCCChhHHhCC
Confidence 7777665 4567788888888887777778888
Q ss_pred cccCeEeccCcccccccCcccccc-cCCCEEeCCCCcccc
Q 038149 730 GEIHALNLSNNFLSGSIPRSFSNL-KMTESMDLSYNKLNG 768 (844)
Q Consensus 730 ~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~Ls~N~l~~ 768 (844)
++|++|||++|+|++..|..+..+ ++|+.|+|++|.++.
T Consensus 542 ~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 888888888888888888888877 678888888888774
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-43 Score=416.57 Aligned_cols=534 Identities=21% Similarity=0.187 Sum_probs=351.1
Q ss_pred cEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCE
Q 038149 100 HVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEV 179 (844)
Q Consensus 100 ~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 179 (844)
++.+.++-+++.++. .+ -+.+++|||++|+|++..+.+|.++++|++|+|++|.|+. ++..+|.++++|++
T Consensus 34 ~~~~c~~~~l~~vP~-----~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~ 104 (635)
T 4g8a_A 34 ITYQCMELNFYKIPD-----NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLST 104 (635)
T ss_dssp TEEECTTSCCSSCCS-----SS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCE
T ss_pred CEEECCCCCcCccCC-----CC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCE
Confidence 345666666666543 11 1468888888888887777788888888888888887754 55566777777777
Q ss_pred EEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCC-CCChhhhcCCCCCCeEecCC
Q 038149 180 LDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG-NLPLSVIANLTSLEYLSLFD 258 (844)
Q Consensus 180 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~l~~l~~L~~L~L~~ 258 (844)
|+|++|+++ .+++..|.++++|++|+|++|.+++..+..|+++++|++|++++|.+++ .+| ..++.+++|++|++++
T Consensus 105 L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 105 LILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSS 182 (635)
T ss_dssp EECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCS
T ss_pred EEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCc-hhhccchhhhhhcccC
Confidence 777777776 5565667777777777777777776666667777777777777777753 234 5566666666666666
Q ss_pred CcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCC----CCCEEEccCCccc
Q 038149 259 NHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQY----DFRYIDLSDNNLV 334 (844)
Q Consensus 259 n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~----~L~~L~Ls~n~l~ 334 (844)
|++++. .+..+..+. ....++++.|.+.
T Consensus 183 N~l~~~------------------------------------------------~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 183 NKIQSI------------------------------------------------YCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp SCCCEE------------------------------------------------CGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred cccccc------------------------------------------------ccccccchhhhhhhhhhhhcccCccc
Confidence 665432 222333222 2346777777776
Q ss_pred ccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCC------C
Q 038149 335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFE------G 408 (844)
Q Consensus 335 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~------~ 408 (844)
...+..+ . ...++.+++.+|.....++......++.++...+..+... .
T Consensus 215 ~i~~~~~--~-----------------------~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 215 FIQPGAF--K-----------------------EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp EECTTTT--T-----------------------TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ccCcccc--c-----------------------chhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 4433322 1 1223345555554433333333334566665555433221 1
Q ss_pred CCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCccccccccc
Q 038149 409 SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLL 488 (844)
Q Consensus 409 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 488 (844)
.....+..+..+...++..+...... ......+..+.+++.+.+.++.+....+ +.
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~----------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~ 325 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYL----------------------DGIIDLFNCLTNVSSFSLVSVTIERVKD--FS 325 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCE----------------------EECTTTTGGGTTCSEEEEESCEEEECGG--GG
T ss_pred ccccccccccchhhhhhhhhhhcccc----------------------cchhhhhhhhcccccccccccccccccc--cc
Confidence 22223333334443333332221100 0112233344555555555555543222 33
Q ss_pred CCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCccc--CCCCC-CCCCCc
Q 038149 489 NASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGP--LEFSS-NHSSLR 565 (844)
Q Consensus 489 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~~-~~~~L~ 565 (844)
....++.|++.+|.+.+..+ ..+..|+.+++.+|...... ....+++|+.+++++|.+... .+... ...+|+
T Consensus 326 ~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 400 (635)
T 4g8a_A 326 YNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK 400 (635)
T ss_dssp SCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCC
T ss_pred cchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhh
Confidence 45566666666666654332 23456666666666554322 234566677777777766432 22222 566777
Q ss_pred EEECCCCccccccCccccCCCCCCEEECCCCcCCcccc-hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149 566 YLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA-HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN 644 (844)
Q Consensus 566 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 644 (844)
.+++..+... ..+..+..+++|+.+++++|......+ ..+..+++++.++++.|++.+..|..+..++.|+.|++++|
T Consensus 401 ~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N 479 (635)
T 4g8a_A 401 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479 (635)
T ss_dssp EEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred hhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence 8888777776 455667888999999999888765544 56788899999999999999888888999999999999999
Q ss_pred cccc-CCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCC
Q 038149 645 TLNG-PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP 723 (844)
Q Consensus 645 ~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 723 (844)
++.+ .+|..|.. +++|++|||++|++++.+|
T Consensus 480 ~~~~~~~~~~~~~------------------------------------------------l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 480 SFQENFLPDIFTE------------------------------------------------LRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp EEGGGEECSCCTT------------------------------------------------CTTCCEEECTTSCCCEECT
T ss_pred ccccccCchhhhh------------------------------------------------ccccCEEECCCCccCCcCh
Confidence 7543 45555544 4678899999999998889
Q ss_pred chhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCC-CCCCEEEccCCcccccCC
Q 038149 724 SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGEL-SFLAIFNVSYNNLSGTVP 795 (844)
Q Consensus 724 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip 795 (844)
..|+.+++|++|+|++|+|++..|..|+++++|++|||++|+|++..|..+..+ ++|++|++++|++++...
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999998888899999999999999999999999999888 689999999999988654
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9e-45 Score=430.46 Aligned_cols=437 Identities=17% Similarity=0.218 Sum_probs=352.4
Q ss_pred CcccEEEccCCCCCcCcChhhhcCCCCCEEEc-cCCcccccCchhHhhcCCCCc-----EEE-------c---CCCccc-
Q 038149 297 FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDL-SDNNLVDTFPTWLLQNNTKLE-----IMF-------L---FNNFLT- 359 (844)
Q Consensus 297 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~-----~L~-------l---~~n~l~- 359 (844)
.+++.|+|+++.+.|.+|..++++++|++|+| ++|.+.|..|.........+. .+. + ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46899999999999999999999999999999 888887764422100000000 000 0 000000
Q ss_pred -------cc---ccC-CCCCCCCCEEEccC--CcccccCChhhhcCCCCccEEEccCCcCCC-----------------C
Q 038149 360 -------GN---LQL-PNSKRNLPHLVISN--NSFIGKLPENFGLILPELVYLDMSQNSFEG-----------------S 409 (844)
Q Consensus 360 -------~~---~~~-~~~~~~L~~L~l~~--n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~-----------------~ 409 (844)
.. ..+ ......++.+.+.. |.+++ +|..++. +++|++|+|++|.+++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00 000 01223444444544 88887 8988775 9999999999999998 3
Q ss_pred CCcccc--ccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcc-cCC-cCCccccCCC-------CcCEecCCCCc
Q 038149 410 IPPSMG--YMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNY-FDG-QIFPKYMNLA-------KLVFLFLNDNQ 478 (844)
Q Consensus 410 ~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~ 478 (844)
+|..++ .+++|++|+|++|.+.+.+|..+ ..+++|++|++++|+ +++ .+|..+..++ +|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 888887 99999999999999999999765 789999999999998 888 7776665554 99999999999
Q ss_pred Ccccccc--cccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCC-CCEEecCCCcCcccC
Q 038149 479 FTGRLEV--GLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEV-ARILDISENKLYGPL 555 (844)
Q Consensus 479 l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~-L~~L~ls~n~l~~~~ 555 (844)
++ .+|. .+..+++|++|++++|+++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 99 7888 8999999999999999999 788 8999999999999999999 88888999999 999999999998 56
Q ss_pred CCCC-CC--CCCcEEECCCCccccccCccc---c--CCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCC
Q 038149 556 EFSS-NH--SSLRYLFPHNNSLSGTIPNAL---L--QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIP 627 (844)
Q Consensus 556 ~~~~-~~--~~L~~L~l~~n~l~~~~p~~l---~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p 627 (844)
|..+ .. ++|+.|++++|++++.+|... . .+++|+.|++++|+++...+..+..+++|+.|+|++|+++ .+|
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 6555 33 459999999999998776432 2 3458999999999999544444568999999999999999 777
Q ss_pred cccCCCC--------CCCEEEcCCCccccCCCchhh--ccccccccCcccccccccCCCcccccccccceeeeeeecccc
Q 038149 628 EPLCHLR--------KLAIVDISYNTLNGPIPSCFT--NISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRY 697 (844)
Q Consensus 628 ~~l~~l~--------~L~~L~Ls~N~l~~~~p~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (844)
..+.... +|+.|+|++|+++ .+|..+. .
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~----------------------------------------- 751 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT----------------------------------------- 751 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT-----------------------------------------
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc-----------------------------------------
Confidence 7655433 8999999999998 7777664 3
Q ss_pred ccccccccccceEEEeecCcccCCCCchhhhccccCeEeccC------cccccccCcccccccCCCEEeCCCCcccccCC
Q 038149 698 ESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSN------NFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP 771 (844)
Q Consensus 698 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 771 (844)
+++|+.|+|++|++++ +|..++.+++|+.|+|++ |++.+.+|..|+++++|+.|+|++|++ +.+|
T Consensus 752 -------l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 752 -------LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp -------CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred -------CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 5689999999999997 899999999999999976 889999999999999999999999999 7999
Q ss_pred ccccCCCCCCEEEccCCcccccCC
Q 038149 772 PELGELSFLAIFNVSYNNLSGTVP 795 (844)
Q Consensus 772 ~~l~~l~~L~~L~ls~N~l~g~ip 795 (844)
..+. ++|+.|||++|++...-+
T Consensus 823 ~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 823 EKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp SCCC--SSSCEEECCSCTTCEEEC
T ss_pred Hhhc--CCCCEEECCCCCCCccCh
Confidence 9876 699999999999876544
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-44 Score=413.96 Aligned_cols=458 Identities=19% Similarity=0.194 Sum_probs=300.5
Q ss_pred CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149 128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207 (844)
Q Consensus 128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 207 (844)
++||+++|+++. +|..+. ++|++|++++|.++. +++..|.++++|++|+|++|+++ .+++..|+++++|++|+|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISE--LWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCC--CCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccc--cChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEec
Confidence 578889988875 555554 788888888888854 44467888888888888888887 454567888888888888
Q ss_pred cCCcCCcCCcccccCCCCCCEEECcCCCCCC-CCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccc
Q 038149 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSG-NLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQV 286 (844)
Q Consensus 208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i 286 (844)
++|.++. +|.. .+++|++|++++|.+++ .+| ..++++++|++|++++|.+.+ ..+..+++|
T Consensus 77 s~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L---------- 138 (520)
T 2z7x_B 77 SHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPIC-KEFGNMSQLKFLGLSTTHLEK----SSVLPIAHL---------- 138 (520)
T ss_dssp CSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCC-GGGGGCTTCCEEEEEESSCCG----GGGGGGTTS----------
T ss_pred CCCceee-cCcc--ccCCccEEeccCCccccccch-hhhccCCcceEEEecCcccch----hhccccccc----------
Confidence 8888884 5554 78888888888888875 356 678888888888888888765 235555555
Q ss_pred cCCCCCCCCCCcccEEEccCCCC--CcCcChhhhcCC-CCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCc------
Q 038149 287 ETENFPWLPKFQLKVLNLRHCNI--SGTIPRFLQYQY-DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF------ 357 (844)
Q Consensus 287 ~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~------ 357 (844)
+|++|++++|.+ .+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.
T Consensus 139 -----------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 207 (520)
T 2z7x_B 139 -----------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207 (520)
T ss_dssp -----------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH
T ss_pred -----------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc
Confidence 124444444444 444444444433 222345555555555554444455555555555554
Q ss_pred -ccccccCCCCCCCCCEEEccCCcccccCChhhhc--CCCCccEEEccCCcCCCCCCccc-----cccccCcEEeccCCc
Q 038149 358 -LTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGL--ILPELVYLDMSQNSFEGSIPPSM-----GYMERLLFLDLSSNN 429 (844)
Q Consensus 358 -l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~ 429 (844)
+.+..+....+++|++|++++|.+.+..+..+.. ..++|++|++++|++++.+|..+ +.+++|+.+++++|.
T Consensus 208 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence 3332222335566777777777665533222211 14578888888888888888877 788888888888888
Q ss_pred CCCCCChhhhhcC---CCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCc-
Q 038149 430 FSRDLPKHFLTSC---VSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSG- 505 (844)
Q Consensus 430 l~~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~- 505 (844)
+ .+|...+..+ .+|+.|++++|.+..... +..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363 (520)
T ss_dssp C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred e--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence 7 5663322333 567777777777654321 1455566666666666665555555556666666666666554
Q ss_pred -CCChhhhcCCCCCEEeCCCCcccccCCcc-ccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCcccc
Q 038149 506 -QLPRWIGKFSNLDVLLMSRNSFEGDVSVQ-LSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALL 583 (844)
Q Consensus 506 -~~p~~l~~l~~L~~L~ls~n~l~~~~~~~-l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~ 583 (844)
.+|..+..+++|++|++++|.+.+.+|.. +. .+++|+.|++++|++++.+|..+.
T Consensus 364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~-----------------------~l~~L~~L~Ls~N~l~~~~~~~l~ 420 (520)
T 2z7x_B 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-----------------------WTKSLLSLNMSSNILTDTIFRCLP 420 (520)
T ss_dssp HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC-----------------------CCTTCCEEECCSSCCCGGGGGSCC
T ss_pred ccchHHHhhCCCCCEEECCCCcCCcccccchhc-----------------------cCccCCEEECcCCCCCcchhhhhc
Confidence 33444555555555555555555433322 33 345555555666666556655553
Q ss_pred CCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcc-cCCCCCCCEEEcCCCccccCCC
Q 038149 584 QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP-LCHLRKLAIVDISYNTLNGPIP 651 (844)
Q Consensus 584 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p 651 (844)
++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus 421 --~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 421 --PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp --TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 67888999999888 67777778899999999999998 45654 8889999999999999987655
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.8e-42 Score=395.62 Aligned_cols=463 Identities=22% Similarity=0.230 Sum_probs=275.5
Q ss_pred CCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 038149 123 SLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNL 202 (844)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 202 (844)
.+...+++++++|++++ +|..+. ++|++|++++|.++. ++...|.++++|++|+|++|+++ .+++..|.++++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 102 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE--LRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDL 102 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC--CCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTC
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc--cChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCC
Confidence 34455888888888876 444443 678888888887754 44467777777888888777777 4444567777777
Q ss_pred cEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCC-CCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEc
Q 038149 203 VELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSG-NLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQL 281 (844)
Q Consensus 203 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 281 (844)
++|+|++|.++. +|.. .+++|++|++++|++++ .+| ..++++++|++|++++|.+.+. .+..+++|
T Consensus 103 ~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p-~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L----- 169 (562)
T 3a79_B 103 EYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVC-KEFGNLTKLTFLGLSAAKFRQL----DLLPVAHL----- 169 (562)
T ss_dssp CEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCC-GGGGGCTTCCEEEEECSBCCTT----TTGGGTTS-----
T ss_pred CEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCch-HhhcccCcccEEecCCCccccC----chhhhhhc-----
Confidence 777777777773 4444 67777777777777763 233 5677777777777777776541 23333333
Q ss_pred cCccccCCCCCCCCCCcccEEEccCCCC--CcCcChhhhcCC-CCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCc-
Q 038149 282 SRLQVETENFPWLPKFQLKVLNLRHCNI--SGTIPRFLQYQY-DFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF- 357 (844)
Q Consensus 282 ~~~~i~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~- 357 (844)
+|++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|.
T Consensus 170 ----------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 170 ----------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp ----------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred ----------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence 234555555555 445555554433 111345555555555554444455555555555553
Q ss_pred ----ccccccCCCCCCCCCEEEccCCccccc----CChhhhcCCCCccEEEccCCcCCCCCCccc-----cccccCcEEe
Q 038149 358 ----LTGNLQLPNSKRNLPHLVISNNSFIGK----LPENFGLILPELVYLDMSQNSFEGSIPPSM-----GYMERLLFLD 424 (844)
Q Consensus 358 ----l~~~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~ 424 (844)
+.+.......+++|+.+++.++.+.+. ++.... .++|++|++++|.+++.+|..+ ..++.|+.++
T Consensus 234 ~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311 (562)
T ss_dssp THHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred ccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence 111111112345555565555544332 122221 3478888888888877777766 6666666666
Q ss_pred ccCCcCCCCCChhhhhc---CCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCc
Q 038149 425 LSSNNFSRDLPKHFLTS---CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNN 501 (844)
Q Consensus 425 Ls~n~l~~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 501 (844)
++.+.+ .+|...+.. ..+|++|++++|.+..... ...+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 312 ~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 312 VKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp EEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred ccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 666666 455332222 2456666666666543211 134444555555555544444444444444444444444
Q ss_pred ccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCC-C-CCCCCcEEECCCCccccccC
Q 038149 502 MLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS-S-NHSSLRYLFPHNNSLSGTIP 579 (844)
Q Consensus 502 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~-~-~~~~L~~L~l~~n~l~~~~p 579 (844)
++++.. .+|..+..+++|++|++++|++.+.+|.. + .+++|+.|++++|++++.+|
T Consensus 388 ~l~~~~----------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 388 GLKNFF----------------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CCCBTT----------------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred CcCCcc----------------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 444311 12334455555555555555555433322 2 45666666666666666665
Q ss_pred ccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcc-cCCCCCCCEEEcCCCccccCCCc
Q 038149 580 NALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP-LCHLRKLAIVDISYNTLNGPIPS 652 (844)
Q Consensus 580 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~ 652 (844)
..+. ++|++|++++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|+.|++++|++.+..|.
T Consensus 446 ~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 5543 67888899988888 56776678889999999999998 55655 88899999999999999876654
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.2e-41 Score=377.26 Aligned_cols=375 Identities=19% Similarity=0.214 Sum_probs=321.9
Q ss_pred EEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcC
Q 038149 373 HLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSH 452 (844)
Q Consensus 373 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 452 (844)
.++.+++.+. .+|. + .++|++|++++|.+++..|..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4555555554 5665 2 478999999999998888888999999999999999988778777778899999999999
Q ss_pred cccCCcCCccccCCCCcCEecCCCCcCccccccc--ccCCCCCcEEEccCcccCcCCChh-hhcCCCCCEEeCCCCcccc
Q 038149 453 NYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVG--LLNASSLYVLDVSNNMLSGQLPRW-IGKFSNLDVLLMSRNSFEG 529 (844)
Q Consensus 453 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~ls~n~l~~ 529 (844)
|++++..|..+.++++|++|++++|++++..+.. +..+++|++|++++|++++..|.. +..+++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9999888889999999999999999998765554 888999999999999999887776 8899999999999999998
Q ss_pred cCCccccCC--CCCCEEecCCCcCcccCCCC---------CCCCCCcEEECCCCccccccCccccCC---CCCCEEECCC
Q 038149 530 DVSVQLSNL--EVARILDISENKLYGPLEFS---------SNHSSLRYLFPHNNSLSGTIPNALLQS---SQLTTLDLRD 595 (844)
Q Consensus 530 ~~~~~l~~l--~~L~~L~ls~n~l~~~~~~~---------~~~~~L~~L~l~~n~l~~~~p~~l~~l---~~L~~L~Ls~ 595 (844)
..+..+..+ ..|+.|++++|.+.+..+.. ..+++|+.|++++|++++..|..+... ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 888888766 68899999999987755442 245789999999999998888877655 8899999999
Q ss_pred CcCCcc----------cchhhhC--CCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcccccccc
Q 038149 596 NEFSGN----------IAHLINE--DSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEK 663 (844)
Q Consensus 596 N~l~~~----------~~~~l~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~ 663 (844)
|.+.+. .+..+.. .++|++|++++|++++.+|..+..+++|+.|++++|++++..|..|++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------- 321 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------- 321 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-------
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-------
Confidence 865542 1222222 368999999999999999999999999999999999999888877765
Q ss_pred CcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccc
Q 038149 664 GNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLS 743 (844)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 743 (844)
+++|++|+|++|++++..|..++.+++|++|+|++|+++
T Consensus 322 -----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 322 -----------------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 457899999999999888999999999999999999999
Q ss_pred cccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcC
Q 038149 744 GSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQF 800 (844)
Q Consensus 744 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 800 (844)
+..|..|+++++|++|+|++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 999999999999999999999999877778899999999999999999999965433
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-41 Score=390.69 Aligned_cols=435 Identities=19% Similarity=0.201 Sum_probs=327.1
Q ss_pred CcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEc
Q 038149 297 FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVI 376 (844)
Q Consensus 297 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 376 (844)
.+|++|++++|.+++..+..|..+++|++|++++|++++..|..+. .+++|++|++++|.++..... .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 3566777777777776777777788888888888877766665554 677777777777777754332 6788888888
Q ss_pred cCCcccc-cCChhhhcCCCCccEEEccCCcCCCCCCccccccccC--cEEeccCCcC--CCCCChhhhhcCC-CCcEEeC
Q 038149 377 SNNSFIG-KLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERL--LFLDLSSNNF--SRDLPKHFLTSCV-SLEFMNL 450 (844)
Q Consensus 377 ~~n~l~~-~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~~l~-~L~~L~L 450 (844)
++|.+.+ .+|..+.. +++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+ ..+. ..-.+++
T Consensus 129 s~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l-~~l~~~~l~l~l 203 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL-QIPNTTVLHLVF 203 (562)
T ss_dssp CSSCCSBCCCCGGGGG-CTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE-EECCEEEEEEEE
T ss_pred CCCCccccCchHhhcc-cCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc-cccCcceEEEEe
Confidence 8888775 34455554 78888888888888753 34555555 8888888888 66666543 2322 1225577
Q ss_pred cCcccCCcCCc-cccCCCCcCEecCCCCcC-----cccccccccCCCCCcEEEccCcccCcC----CChhhhcCCCCCEE
Q 038149 451 SHNYFDGQIFP-KYMNLAKLVFLFLNDNQF-----TGRLEVGLLNASSLYVLDVSNNMLSGQ----LPRWIGKFSNLDVL 520 (844)
Q Consensus 451 s~n~l~~~~~~-~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L 520 (844)
++|.+.+.++. .+..+++|+.+++++|+. .+ ....+..++.|+.++++++.+.+. ++..+ ..++|++|
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L 281 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYL 281 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEE
Confidence 77877765443 456778888888888752 22 223466778888888888777642 12222 24589999
Q ss_pred eCCCCcccccCCccc-----cCCCCCCEEecCCCcCcccCCCCC-----CCCCCcEEECCCCccccccCccccCCCCCCE
Q 038149 521 LMSRNSFEGDVSVQL-----SNLEVARILDISENKLYGPLEFSS-----NHSSLRYLFPHNNSLSGTIPNALLQSSQLTT 590 (844)
Q Consensus 521 ~ls~n~l~~~~~~~l-----~~l~~L~~L~ls~n~l~~~~~~~~-----~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 590 (844)
++++|.+++.+|..+ ..++.|+.++++.+.+ .+|... ...+|+.|++++|.+.... ....+++|++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 357 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTF 357 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceE
Confidence 999999988888877 6677777777777766 333211 2357999999999876332 1267889999
Q ss_pred EECCCCcCCcccchhhhCCCCCCEEEccCCcccc--cCCcccCCCCCCCEEEcCCCccccCCCch-hhccccccccCccc
Q 038149 591 LDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQG--NIPEPLCHLRKLAIVDISYNTLNGPIPSC-FTNISLWMEKGNYY 667 (844)
Q Consensus 591 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~~~~~~~~~ 667 (844)
|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|.. +..
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~----------- 426 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW----------- 426 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC-----------
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC-----------
Confidence 9999999999889999999999999999999986 34567899999999999999998766654 322
Q ss_pred ccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccC
Q 038149 668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP 747 (844)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip 747 (844)
+++|++|+|++|++++.+|..+. ++|++|+|++|+++ .+|
T Consensus 427 -------------------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip 466 (562)
T 3a79_B 427 -------------------------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIP 466 (562)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCC
T ss_pred -------------------------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccC
Confidence 46789999999999988887765 78999999999999 788
Q ss_pred cccccccCCCEEeCCCCcccccCCcc-ccCCCCCCEEEccCCcccccCCCC
Q 038149 748 RSFSNLKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVSYNNLSGTVPNK 797 (844)
Q Consensus 748 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~~ 797 (844)
..+..+++|+.|||++|+++ .+|.. +..+++|++|++++|++.|.+|..
T Consensus 467 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp TTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred hhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 88889999999999999999 56766 999999999999999999987743
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-39 Score=362.40 Aligned_cols=403 Identities=23% Similarity=0.253 Sum_probs=191.8
Q ss_pred CCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCC-------------cEEEcCCCcccccc
Q 038149 296 KFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKL-------------EIMFLFNNFLTGNL 362 (844)
Q Consensus 296 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L-------------~~L~l~~n~l~~~~ 362 (844)
..+|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..+. .+.+| +.+++++|.+++..
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 34678888888888 67888888888888888888888888887654 45543 66666666666532
Q ss_pred cCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcC
Q 038149 363 QLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSC 442 (844)
Q Consensus 363 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 442 (844)
. ..++|++|++++|.+.+ +|.. +++|++|++++|++++ ++.. .++|++|++++|++++ +|. +..+
T Consensus 88 ~---~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~--~~~l 152 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPE--LQNS 152 (454)
T ss_dssp S---CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCC--CTTC
T ss_pred C---CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Ccc--cCCC
Confidence 2 23566666666666664 4432 3566666666666653 2221 1466666666666653 552 4566
Q ss_pred CCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeC
Q 038149 443 VSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLM 522 (844)
Q Consensus 443 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 522 (844)
++|++|++++|++++ +|.. .++|++|++++|++++ +| .+..+++|++|++++|++++ +|.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 666666666666654 2322 2366666666666664 34 45666666666666666664 3322 245666666
Q ss_pred CCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCccc
Q 038149 523 SRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI 602 (844)
Q Consensus 523 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 602 (844)
++|.+. .+| .+..+++|++|++++|++.+. |. .+++|+.|++++|++++ +|.. .++|++|++++|++++.
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~--~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l- 292 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD--LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL- 292 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc--cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-
Confidence 666665 444 356666666666666666542 22 23566666666666653 3432 25566666666666541
Q ss_pred chhhhCCCCCCEEEccCCcccccCCcccCCC-CCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccc
Q 038149 603 AHLINEDSNLRALLLRGNNLQGNIPEPLCHL-RKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNR 681 (844)
Q Consensus 603 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 681 (844)
|.. .++|++|++++|++++ ++ .+ ++|+.|++++|++++ +|..
T Consensus 293 ~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---------------------------- 335 (454)
T 1jl5_A 293 SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---------------------------- 335 (454)
T ss_dssp SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc----------------------------
Confidence 111 1456666666666653 12 12 356666666666653 3322
Q ss_pred ccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCccccc--ccCcccccccCCCEE
Q 038149 682 ESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSG--SIPRSFSNLKMTESM 759 (844)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L 759 (844)
+++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.+++.+
T Consensus 336 -----------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L------ 382 (454)
T 1jl5_A 336 -----------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL------ 382 (454)
T ss_dssp -----------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE------
T ss_pred -----------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh------
Confidence 234556666666666 4554 35666666666666665 555554432
Q ss_pred eCCCCcccccCCccccCCCCCCEEEccCCcccc--cCCCCCcCCCcCccccCCCCCCc
Q 038149 760 DLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG--TVPNKGQFANFDESNYRGNPYLC 815 (844)
Q Consensus 760 ~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~ip~~~~~~~~~~~~~~gn~~lc 815 (844)
+.|.+.|.+|.. +++|++|++++|+++| .+|.. +....+.+|..-|
T Consensus 383 --~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s-----l~~L~~~~~~~~~ 430 (454)
T 1jl5_A 383 --RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES-----VEDLRMNSERVVD 430 (454)
T ss_dssp --ECCC----------------------------------------------------
T ss_pred --hhcccccccccc---cCcCCEEECCCCcCCccccchhh-----HhheeCcCcccCC
Confidence 235555555543 3788999999999988 67753 3444555554433
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.4e-40 Score=365.14 Aligned_cols=301 Identities=23% Similarity=0.330 Sum_probs=165.0
Q ss_pred CCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEec
Q 038149 394 PELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLF 473 (844)
Q Consensus 394 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 473 (844)
++|++|++++|++++ +| .++.+++|++|++++|++++ +|.. .++|++|++++|++++ +| .+..+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 456666666666653 44 36666666666666666653 4432 2466666666666665 23 466666677777
Q ss_pred CCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcc
Q 038149 474 LNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG 553 (844)
Q Consensus 474 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 553 (844)
+++|++++ +|.. .++|++|++++|+++ .+|. ++.+++|++|++++|++++ +|.. .++|++|++++|++.+
T Consensus 202 l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 202 ADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred CCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence 77766664 3322 246777777777776 4553 6677777777777777764 3322 3667777777777765
Q ss_pred cCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCC
Q 038149 554 PLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHL 633 (844)
Q Consensus 554 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 633 (844)
+|. .+++|+.|++++|++++ +|.. .++|++|++++|++++ ++. ..++|++|++++|++++ +|.. +
T Consensus 272 -l~~--~~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~ 336 (454)
T 1jl5_A 272 -LPE--LPQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---P 336 (454)
T ss_dssp -CCC--CCTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---C
T ss_pred -cCc--ccCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---C
Confidence 332 23677888888887775 2221 2578888888888875 221 12588889999988885 6654 5
Q ss_pred CCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEe
Q 038149 634 RKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDL 713 (844)
Q Consensus 634 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 713 (844)
++|+.|++++|+++ .+|. + +++|++|++
T Consensus 337 ~~L~~L~L~~N~l~-~lp~-~--------------------------------------------------l~~L~~L~L 364 (454)
T 1jl5_A 337 PRLERLIASFNHLA-EVPE-L--------------------------------------------------PQNLKQLHV 364 (454)
T ss_dssp TTCCEEECCSSCCS-CCCC-C--------------------------------------------------CTTCCEEEC
T ss_pred CcCCEEECCCCccc-cccc-h--------------------------------------------------hhhccEEEC
Confidence 78889999999887 3444 1 356888999
Q ss_pred ecCcccC--CCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc--cCCccccCCCCCCEEEccCCc
Q 038149 714 SSNELTG--DIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG--QIPPELGELSFLAIFNVSYNN 789 (844)
Q Consensus 714 s~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~ls~N~ 789 (844)
++|++++ .+|.+++. |+.|++.|.+|.. +++|+.||+++|++++ .+|.+ ++.|.+.+|.
T Consensus 365 ~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~ 427 (454)
T 1jl5_A 365 EYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSER 427 (454)
T ss_dssp CSSCCSSCCCCCTTCCE--------EECCC--------------------------------------------------
T ss_pred CCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcc
Confidence 9999998 77776654 3457788888874 5788999999999987 77754 4566788999
Q ss_pred ccccCCCC
Q 038149 790 LSGTVPNK 797 (844)
Q Consensus 790 l~g~ip~~ 797 (844)
+.+.+|..
T Consensus 428 ~~~~~~~~ 435 (454)
T 1jl5_A 428 VVDPYEFA 435 (454)
T ss_dssp --------
T ss_pred cCCccccC
Confidence 98887754
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-38 Score=358.48 Aligned_cols=370 Identities=20% Similarity=0.248 Sum_probs=319.8
Q ss_pred ccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcC-CccccCCCCcCEecC
Q 038149 396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQI-FPKYMNLAKLVFLFL 474 (844)
Q Consensus 396 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L 474 (844)
-+.++.+++.++ .+|. + .++|++|++++|.+++..|.. +..+++|++|++++|.+.+.+ +..|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 346888888887 6666 3 378999999999998654544 589999999999999997554 567899999999999
Q ss_pred CCCcCcccccccccCCCCCcEEEccCcccCcCCChh--hhcCCCCCEEeCCCCcccccCCcc-ccCCCCCCEEecCCCcC
Q 038149 475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRW--IGKFSNLDVLLMSRNSFEGDVSVQ-LSNLEVARILDISENKL 551 (844)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~--l~~l~~L~~L~ls~n~l~~~~~~~-l~~l~~L~~L~ls~n~l 551 (844)
++|++++..|..+.++++|++|++++|++++.+|.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999999865554 899999999999999999887876 89999999999999999
Q ss_pred cccCCCCC---CCCCCcEEECCCCccccccCcc--------ccCCCCCCEEECCCCcCCcccchhhhCC---CCCCEEEc
Q 038149 552 YGPLEFSS---NHSSLRYLFPHNNSLSGTIPNA--------LLQSSQLTTLDLRDNEFSGNIAHLINED---SNLRALLL 617 (844)
Q Consensus 552 ~~~~~~~~---~~~~L~~L~l~~n~l~~~~p~~--------l~~l~~L~~L~Ls~N~l~~~~~~~l~~l---~~L~~L~L 617 (844)
.+..+..+ ....|+.|++++|.+.+..+.. +..+++|++|++++|++++..|..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 98877765 3378999999999998655443 3366899999999999999888887654 89999999
Q ss_pred cCCcccccC----------CcccC--CCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccccccc
Q 038149 618 RGNNLQGNI----------PEPLC--HLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQ 685 (844)
Q Consensus 618 ~~N~l~~~~----------p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (844)
++|.+.+.. +..+. ..++|+.|++++|.+++.+|..++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------------- 297 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH----------------------------- 297 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-----------------------------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-----------------------------
Confidence 999765431 11222 2368999999999999888887765
Q ss_pred ceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCc
Q 038149 686 RVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNK 765 (844)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 765 (844)
+++|++|+|++|++++..|..++.+++|++|+|++|.+++..|..|+++++|++|||++|+
T Consensus 298 -------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 298 -------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp -------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC
T ss_pred -------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc
Confidence 4688999999999999889999999999999999999998889999999999999999999
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCCCC-CcCCCcCccccCCCCCCcCcc
Q 038149 766 LNGQIPPELGELSFLAIFNVSYNNLSGTVPNK-GQFANFDESNYRGNPYLCGPA 818 (844)
Q Consensus 766 l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lc~~~ 818 (844)
+++..|..+..+++|++|++++|++++..|.. ..+..+..+.+.|||..|.++
T Consensus 359 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 359 IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999999999999999999866554 677788899999999999876
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.4e-38 Score=334.96 Aligned_cols=295 Identities=25% Similarity=0.366 Sum_probs=207.3
Q ss_pred CCcHHHHHHHHHhhhcccccccccccccccCCCcCCCCCCCCC--CCceEecCCC--CceEEEeeCcCcccCCCCCCCCC
Q 038149 10 SCLDSERIGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCT--WERIKCNATT--GRVMELSLDSAIQVDSDDVNDGF 85 (844)
Q Consensus 10 ~c~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~C~--w~gv~c~~~~--~~V~~l~L~~~~~~~~~~~~~~~ 85 (844)
.|.++|++||++||+++.+ | ..+++|.. ++|||. |.||.|+..+ ++|+.|+|+++.+ .|..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~----~---~~l~~W~~--~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l--~~~~---- 66 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGN----P---TTLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--PKPY---- 66 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTC----C---GGGTTCCT--TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--SSCE----
T ss_pred CCCHHHHHHHHHHHHhcCC----c---ccccCCCC--CCCCCcCCCcceEeCCCCCCceEEEEECCCCCc--cCCc----
Confidence 6999999999999999954 3 25899965 368998 9999998655 8999999998876 3310
Q ss_pred cccCCCCccCCCCCcEEeCCC-CCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCC
Q 038149 86 PIINMSLFVPFQELHVLDLSD-NRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEG 164 (844)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 164 (844)
.-+..|..+++|++|++++ |.+.+..+ ..++++++|++|++++|.+++.+|..|.++++|++|++++|.+ .+
T Consensus 67 --~~~~~l~~l~~L~~L~L~~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~ 139 (313)
T 1ogq_A 67 --PIPSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SG 139 (313)
T ss_dssp --ECCGGGGGCTTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-ES
T ss_pred --ccChhHhCCCCCCeeeCCCCCcccccCC----hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc-CC
Confidence 1134566777777777774 66666555 4566777777777777777766777777777777777777776 33
Q ss_pred CcCcccccCCCCCCEEEccCCcCCCCCcccccCCCC-CCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChh
Q 038149 165 FKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLK-NLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLS 243 (844)
Q Consensus 165 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 243 (844)
.+| ..+.++++|++|++++|++++.++. .+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++.+| .
T Consensus 140 ~~p-~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-~ 215 (313)
T 1ogq_A 140 TLP-PSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-V 215 (313)
T ss_dssp CCC-GGGGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-G
T ss_pred cCC-hHHhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-H
Confidence 344 4566677777777777776655443 466665 677777777777666666666665 7777777777665444 6
Q ss_pred hhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCC
Q 038149 244 VIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDF 323 (844)
Q Consensus 244 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 323 (844)
.+.++++|++|++++|.+++.++. +. ..++|++|++++|++++.+|.++..+++|
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~~~~--~~-----------------------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 270 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFDLGK--VG-----------------------LSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCBGGG--CC-----------------------CCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECCCCceeeecCc--cc-----------------------ccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence 666677777777777666554432 22 23456677778888888888888888889
Q ss_pred CEEEccCCcccccCchhHhhcCCCCcEEEcCCCc
Q 038149 324 RYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNF 357 (844)
Q Consensus 324 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~ 357 (844)
++|++++|++++.+|.. ..+++|+.+++.+|.
T Consensus 271 ~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp CEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred CEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence 99999988888888865 356666666666655
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.2e-37 Score=347.46 Aligned_cols=326 Identities=18% Similarity=0.112 Sum_probs=213.3
Q ss_pred CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149 444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS 523 (844)
Q Consensus 444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls 523 (844)
+++.|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 44455555555544444445555555555555555554445555555555555555555554444445555555555555
Q ss_pred CCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCccc
Q 038149 524 RNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNI 602 (844)
Q Consensus 524 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 602 (844)
+|.+.+..+..+..+++|++|++++|.+.+..+..+ .+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 555555555555555555555555555555444433 5556666666666666555566777778888888888877776
Q ss_pred chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccc
Q 038149 603 AHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRE 682 (844)
Q Consensus 603 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (844)
+..+..+++|++|++++|++.+.+|.......+|+.|++++|++++..+..+..
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-------------------------- 246 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH-------------------------- 246 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT--------------------------
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC--------------------------
Confidence 777777788888888887777777776666677888888888877433334443
Q ss_pred cccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCC
Q 038149 683 SSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLS 762 (844)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls 762 (844)
+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 247 ----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 247 ----------------------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp ----------------------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred ----------------------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 4567788888888887777778888888888888888888778888888888888888
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcCc
Q 038149 763 YNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGP 817 (844)
Q Consensus 763 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~ 817 (844)
+|++++..+..+..+++|+.|++++|++.+..+....+.......+.|+...|..
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCC
Confidence 8888876666778888888888888888776543322233333455666666643
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.2e-37 Score=342.09 Aligned_cols=366 Identities=19% Similarity=0.167 Sum_probs=194.3
Q ss_pred CCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCC
Q 038149 307 CNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLP 386 (844)
Q Consensus 307 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p 386 (844)
+...+..+..++.+++|++|++++|.+++. | .+ ..+++|+.|++++|.+++.. ...
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l-~~l~~L~~L~Ls~n~l~~~~--~~~------------------- 83 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GI-EKLTGLTKLICTSNNITTLD--LSQ------------------- 83 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TG-GGCTTCSEEECCSSCCSCCC--CTT-------------------
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcccC-h-hh-cccCCCCEEEccCCcCCeEc--ccc-------------------
Confidence 334444555677777888888888877753 4 22 35566666655555555421 223
Q ss_pred hhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCC
Q 038149 387 ENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNL 466 (844)
Q Consensus 387 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 466 (844)
+++|++|++++|.+++. + ++.+++|++|++++|++++ +| +..+++|++|++++|++++. .+..+
T Consensus 84 ------l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l 147 (457)
T 3bz5_A 84 ------NTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHN 147 (457)
T ss_dssp ------CTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTC
T ss_pred ------CCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccC
Confidence 34444444444444432 1 4444444444444444432 22 23444444444444444442 13444
Q ss_pred CCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEec
Q 038149 467 AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDI 546 (844)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 546 (844)
++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..+++|+.|++++|.+++. .+..+++|++|++
T Consensus 148 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~L 219 (457)
T 3bz5_A 148 TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDC 219 (457)
T ss_dssp TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEEC
T ss_pred CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEEC
Confidence 44455555444333222 24444555555555555543 22 44455555555555555433 2444555555555
Q ss_pred CCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccC
Q 038149 547 SENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNI 626 (844)
Q Consensus 547 s~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 626 (844)
++|++.+ +| ...+++|+.|++++|++++.. +..+++|+.|++++| +|+.|++++|++.+.+
T Consensus 220 s~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 220 SSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF 280 (457)
T ss_dssp CSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE
T ss_pred cCCcccc-cC-ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc
Confidence 5555544 22 224455555555555555432 234455555555543 2344555555555554
Q ss_pred CcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccc
Q 038149 627 PEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLK 706 (844)
Q Consensus 627 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 706 (844)
| ++.+++|+.|++++|++.+.+|....+++. +.....+
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~----------------------------------------L~l~~~~ 318 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITE----------------------------------------LDLSQNP 318 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC----------------------------------------CCCTTCT
T ss_pred c--ccccccCCEEECCCCcccceeccCCCcceE----------------------------------------echhhcc
Confidence 4 344555666666666555555432222110 0111134
Q ss_pred cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEcc
Q 038149 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVS 786 (844)
Q Consensus 707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls 786 (844)
+|++|++++|+++| ++ ++.+++|++|++++|++++ ++.|+.|++++|+++|. ..+..|..++++
T Consensus 319 ~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~ 382 (457)
T 3bz5_A 319 KLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLT 382 (457)
T ss_dssp TCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred cCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccc
Confidence 67778888888886 33 7778888888888888875 24566677888888776 244566777888
Q ss_pred CCcccccCCCC
Q 038149 787 YNNLSGTVPNK 797 (844)
Q Consensus 787 ~N~l~g~ip~~ 797 (844)
+|+++|.||..
T Consensus 383 ~N~l~g~ip~~ 393 (457)
T 3bz5_A 383 NNSLTIAVSPD 393 (457)
T ss_dssp TTBEEEECCTT
T ss_pred cCcEEEEcChh
Confidence 88888888764
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-35 Score=332.42 Aligned_cols=358 Identities=20% Similarity=0.176 Sum_probs=249.5
Q ss_pred CccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccc
Q 038149 92 LFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGL 171 (844)
Q Consensus 92 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l 171 (844)
.+..+++|++|++++|.+++.+ .++.+++|++|++++|.+++. | ++.+++|++|++++|.++. ++ +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~--~~---~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT------GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN--LD---V 102 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT------TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC--CC---C
T ss_pred ChhHcCCCCEEEccCCCcccCh------hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce--ee---c
Confidence 5667888999999999888752 467889999999999998775 3 8889999999999998854 32 7
Q ss_pred cCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCC
Q 038149 172 VNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSL 251 (844)
Q Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L 251 (844)
+++++|++|++++|++++ ++ ++.+++|++|++++|.+++. .++++++|++|++++|+..+.++ +..+++|
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L 172 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQL 172 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTC
T ss_pred CCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcC
Confidence 788999999999999884 43 78889999999999998874 37888999999999996655664 7788899
Q ss_pred CeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCC
Q 038149 252 EYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDN 331 (844)
Q Consensus 252 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 331 (844)
++|++++|.+++ +| +..+++|+.|++++|.++.. .+..+++|++|++++|++++ +| +..+++|++|++++|
T Consensus 173 ~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 173 TTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred CEEECCCCccce-ec---cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence 999999998876 34 67778888888888877765 34455677888888888776 44 677778888888888
Q ss_pred cccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCC
Q 038149 332 NLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIP 411 (844)
Q Consensus 332 ~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~ 411 (844)
++++..+ ..+++|+.++++.| +|+.|++++|.+.+.+|.. .+++|++|++++|...+.+|
T Consensus 244 ~l~~~~~----~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~~~---~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 244 PLTELDV----STLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQAE---GCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CCSCCCC----TTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEECT---TCTTCCCCCCTTCTTCCEEE
T ss_pred cCCCcCH----HHCCCCCEEeccCC-------------CCCEEECCCCccCCccccc---ccccCCEEECCCCcccceec
Confidence 7776432 25666666666554 3445666666666666532 35666667776666555544
Q ss_pred ccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCC
Q 038149 412 PSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNAS 491 (844)
Q Consensus 412 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 491 (844)
. ..++|+.|++++| ++|++|++++|++++. .+..+++|+.|++++|++++ ++
T Consensus 304 ~---~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~ 355 (457)
T 3bz5_A 304 C---QAAGITELDLSQN--------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FS 355 (457)
T ss_dssp C---TTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CT
T ss_pred c---CCCcceEechhhc--------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cc
Confidence 3 2233444433332 4566666666666653 25566666666666666653 23
Q ss_pred CCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccc
Q 038149 492 SLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQL 535 (844)
Q Consensus 492 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l 535 (844)
.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..+
T Consensus 356 ~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 356 SVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp TGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred ccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 455555666666543 234445556666666666665543
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4e-35 Score=330.90 Aligned_cols=345 Identities=21% Similarity=0.256 Sum_probs=244.5
Q ss_pred CCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEE
Q 038149 369 RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFM 448 (844)
Q Consensus 369 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 448 (844)
++++.|++.++.+. .+|. +. .+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++. +..+++|++|
T Consensus 46 ~~l~~L~l~~~~i~-~l~~-~~-~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEE
T ss_pred ccccEEecCCCCCc-cCcc-hh-hhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCcccc-Chh--hcCCCCCCEE
Confidence 34555555555544 3443 22 366777777777776643 32 6677777777777777753 333 4667777777
Q ss_pred eCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccc
Q 038149 449 NLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE 528 (844)
Q Consensus 449 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 528 (844)
++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+.. .+..+++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 777777665432 66777777777777776643 2 36667777777775 4444332 2677777777777777766
Q ss_pred ccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhC
Q 038149 529 GDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINE 608 (844)
Q Consensus 529 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~ 608 (844)
+. ..+..+++|++|++++|.+.+..+ ...+++|+.|++++|++++. ..+..+++|++|++++|.+++..+ +..
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 43 236677777777777777766544 33567788888888877743 357788888888888888886655 778
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccccccccee
Q 038149 609 DSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVE 688 (844)
Q Consensus 609 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (844)
+++|++|++++|++++..+ +..+++|+.|++++|++++..| ++.
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~-------------------------------- 307 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN-------------------------------- 307 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG--------------------------------
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC--------------------------------
Confidence 8888888888888886543 7788888888888888875433 222
Q ss_pred eeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149 689 VKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768 (844)
Q Consensus 689 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 768 (844)
+++|+.|+|++|++++..| ++.+++|+.|++++|.+++. ..++++++|+.|++++|++++
T Consensus 308 ----------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 308 ----------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp ----------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred ----------------CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 5678889999998887665 77888999999999988864 468888999999999999988
Q ss_pred cCCccccCCCCCCEEEccCCccccc
Q 038149 769 QIPPELGELSFLAIFNVSYNNLSGT 793 (844)
Q Consensus 769 ~ip~~l~~l~~L~~L~ls~N~l~g~ 793 (844)
.+| +..+++|+.|++++|++++.
T Consensus 368 ~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG--GTTCTTCCEEECCCEEEECC
T ss_pred cch--hhcCCCCCEEeccCCcccCC
Confidence 776 78888999999999988873
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.7e-35 Score=327.80 Aligned_cols=345 Identities=24% Similarity=0.312 Sum_probs=298.0
Q ss_pred CCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEe
Q 038149 393 LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFL 472 (844)
Q Consensus 393 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 472 (844)
+++++.|+++++.+. .+| .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 578999999999998 455 48899999999999999974 554 6899999999999999987654 8999999999
Q ss_pred cCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCc
Q 038149 473 FLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLY 552 (844)
Q Consensus 473 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 552 (844)
++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|+++ |.+.+.. .+..+++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 999999997644 8899999999999999986 44 58999999999996 5555443 3889999999999999987
Q ss_pred ccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149 553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH 632 (844)
Q Consensus 553 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 632 (844)
+. +....+++|++|++++|.+++..| +..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..
T Consensus 191 ~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 64 334488999999999999997665 78899999999999999864 468899999999999999997655 889
Q ss_pred CCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEE
Q 038149 633 LRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLD 712 (844)
Q Consensus 633 l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 712 (844)
+++|+.|++++|++++..| +.. +++|+.|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~------------------------------------------------l~~L~~L~ 293 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAG------------------------------------------------LTALTNLE 293 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTT------------------------------------------------CTTCSEEE
T ss_pred CCCCCEEECCCCccCcccc--ccC------------------------------------------------CCccCeEE
Confidence 9999999999999986443 332 56899999
Q ss_pred eecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149 713 LSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG 792 (844)
Q Consensus 713 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 792 (844)
+++|++++..| ++.+++|+.|+|++|++++..| ++.+++|+.|++++|++++. ..+..+++|++|++++|++++
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 99999996544 8899999999999999998776 88999999999999999975 578999999999999999999
Q ss_pred cCCCCCcCCCcCccccCCCCCCc
Q 038149 793 TVPNKGQFANFDESNYRGNPYLC 815 (844)
Q Consensus 793 ~ip~~~~~~~~~~~~~~gn~~lc 815 (844)
.+| ...+..+..+.+.+|+...
T Consensus 368 ~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 368 LTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CGG-GTTCTTCCEEECCCEEEEC
T ss_pred cch-hhcCCCCCEEeccCCcccC
Confidence 988 5667778888888887655
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.6e-36 Score=317.64 Aligned_cols=260 Identities=32% Similarity=0.520 Sum_probs=226.9
Q ss_pred CCCcEEEccCcccCc--CCChhhhcCCCCCEEeCCC-CcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEE
Q 038149 491 SSLYVLDVSNNMLSG--QLPRWIGKFSNLDVLLMSR-NSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYL 567 (844)
Q Consensus 491 ~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~ls~-n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L 567 (844)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----------------- 112 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN----------------- 112 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----------------
Confidence 568888888888887 7788888888888888884 77777777777777666666666555
Q ss_pred ECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCC-CCCEEEcCCCcc
Q 038149 568 FPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLR-KLAIVDISYNTL 646 (844)
Q Consensus 568 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l 646 (844)
+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++
T Consensus 113 ------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 113 ------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ------CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred ------eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 4456777788888899999999998888888898999999999999999988999999988 899999999999
Q ss_pred ccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchh
Q 038149 647 NGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI 726 (844)
Q Consensus 647 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 726 (844)
++.+|..+.. +. |++|+|++|++++.+|..+
T Consensus 187 ~~~~~~~~~~------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 187 TGKIPPTFAN------------------------------------------------LN-LAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp EEECCGGGGG------------------------------------------------CC-CSEEECCSSEEEECCGGGC
T ss_pred eccCChHHhC------------------------------------------------Cc-ccEEECcCCcccCcCCHHH
Confidence 9888888765 22 7889999999999999999
Q ss_pred hhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCcc
Q 038149 727 GYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDES 806 (844)
Q Consensus 727 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~ 806 (844)
+.+++|++|+|++|.+++.+|. +..+++|++|+|++|+++|.+|..+..+++|++|++++|+++|.+|..+++..+...
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l 296 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChH
Confidence 9999999999999999987776 889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcCccCCCCCC
Q 038149 807 NYRGNPYLCGPAVRKNCS 824 (844)
Q Consensus 807 ~~~gn~~lc~~~~~~~c~ 824 (844)
.+.|||++||.|+. .|.
T Consensus 297 ~l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 297 AYANNKCLCGSPLP-ACT 313 (313)
T ss_dssp GTCSSSEEESTTSS-CCC
T ss_pred HhcCCCCccCCCCC-CCC
Confidence 99999999998875 573
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-34 Score=319.23 Aligned_cols=334 Identities=21% Similarity=0.175 Sum_probs=190.0
Q ss_pred ccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEE
Q 038149 418 ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLD 497 (844)
Q Consensus 418 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 497 (844)
++++.|++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34444444444442 34444444444444444444444444444444444455555555544444444444455555555
Q ss_pred ccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccc
Q 038149 498 VSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGT 577 (844)
Q Consensus 498 ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 577 (844)
+++|+++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. ...+++|+.|++++|.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE-
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc-
Confidence 5555554332233344555555555555554444444555555555555555544321 1134455555555555542
Q ss_pred cCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcc
Q 038149 578 IPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNI 657 (844)
Q Consensus 578 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 657 (844)
+...++|++|++++|++... |.. ..++|++|++++|++++. ..+..+++|+.|++++|.+++..|..|..
T Consensus 201 ----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~- 270 (390)
T 3o6n_A 201 ----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK- 270 (390)
T ss_dssp ----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT-
T ss_pred ----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc-
Confidence 12234566666666666533 221 235666666666666643 45666667777777777766655655544
Q ss_pred ccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEec
Q 038149 658 SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNL 737 (844)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 737 (844)
+++|++|+|++|+++ .+|..+..+++|++|+|
T Consensus 271 -----------------------------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 271 -----------------------------------------------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp -----------------------------------------------CSSCCEEECCSSCCC-EEECSSSCCTTCCEEEC
T ss_pred -----------------------------------------------cccCCEEECCCCcCc-ccCcccCCCCCCCEEEC
Confidence 345667777777776 35555667777888888
Q ss_pred cCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcCc
Q 038149 738 SNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGP 817 (844)
Q Consensus 738 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~ 817 (844)
++|+++ .+|..++.+++|+.|++++|+++.. | +..+++|++|++++|++.+... ...+..+....+.+++..|..
T Consensus 303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCT
T ss_pred CCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceecc
Confidence 888777 5666677778888888888887743 3 6677888888888888877432 234555666677888888875
Q ss_pred c
Q 038149 818 A 818 (844)
Q Consensus 818 ~ 818 (844)
+
T Consensus 378 ~ 378 (390)
T 3o6n_A 378 D 378 (390)
T ss_dssp T
T ss_pred c
Confidence 4
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=327.13 Aligned_cols=261 Identities=19% Similarity=0.162 Sum_probs=124.1
Q ss_pred CCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEE
Q 038149 369 RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFM 448 (844)
Q Consensus 369 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 448 (844)
+++++|++++|.+.+..+..+. .+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|...+..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 3445555555554433333332 2455555555555555444444555555555555555543 3443333444555555
Q ss_pred eCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccc
Q 038149 449 NLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE 528 (844)
Q Consensus 449 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 528 (844)
++++|++.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 55555554444444444555555555555544444444444455555555555444433334444444555555544444
Q ss_pred ccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhC
Q 038149 529 GDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINE 608 (844)
Q Consensus 529 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~ 608 (844)
+..+..+..+++|++|++++|.. .+.+|.......+|++|++++|++++..+..+..
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~-----------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPY-----------------------LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTT-----------------------CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred EeChhhcccCcccceeeCCCCcc-----------------------ccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 44444444444444444444443 3334433333344555555555555333344445
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchh
Q 038149 609 DSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCF 654 (844)
Q Consensus 609 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 654 (844)
+++|++|+|++|++++..+..+..+++|+.|+|++|++++..|..|
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 5555555555555554444444555555555555555544444433
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-34 Score=335.83 Aligned_cols=335 Identities=21% Similarity=0.181 Sum_probs=218.1
Q ss_pred cccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEE
Q 038149 417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVL 496 (844)
Q Consensus 417 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 496 (844)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 344555555555553 4555545555555555555555555555555555556666666665555555555555666666
Q ss_pred EccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccc
Q 038149 497 DVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSG 576 (844)
Q Consensus 497 ~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 576 (844)
++++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|++|++++|.+.+.. ...+++|+.|++++|.+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence 66666665444444555666666666666665555555666666666666666555431 1145566666666666553
Q ss_pred ccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhc
Q 038149 577 TIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN 656 (844)
Q Consensus 577 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 656 (844)
+...++|+.|++++|.+....+. + .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..|+.
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 23345677777777777643322 2 2567777777777775 356777777888888888777777766655
Q ss_pred cccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEe
Q 038149 657 ISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALN 736 (844)
Q Consensus 657 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 736 (844)
+++|+.|+|++|++++ +|..++.+++|+.|+
T Consensus 277 ------------------------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 277 ------------------------------------------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 307 (597)
T ss_dssp ------------------------------------------------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEE
T ss_pred ------------------------------------------------ccCCCEEECCCCCCCC-CCcccccCCCCcEEE
Confidence 3467778888888874 566677788888888
Q ss_pred ccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcC
Q 038149 737 LSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCG 816 (844)
Q Consensus 737 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~ 816 (844)
|++|.++ .+|..++.+++|+.|+|++|.+++. | +..+++|+.|++++|+++|..+. ..+..+....+.+++..|+
T Consensus 308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~ 382 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK 382 (597)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCC
T ss_pred CCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCC
Confidence 8888888 6777788888888888888888754 3 67778899999999999876432 3456667777889999997
Q ss_pred cc
Q 038149 817 PA 818 (844)
Q Consensus 817 ~~ 818 (844)
.+
T Consensus 383 ~~ 384 (597)
T 3oja_B 383 ID 384 (597)
T ss_dssp TT
T ss_pred cc
Confidence 63
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.7e-34 Score=312.56 Aligned_cols=311 Identities=23% Similarity=0.273 Sum_probs=239.0
Q ss_pred CCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCC
Q 038149 95 PFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNL 174 (844)
Q Consensus 95 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 174 (844)
.++++++|+++++.+..+++ ..+..+++|++|++++|.+.+..+..|+.+++|++|+|++|.++. +++..+.++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNV 116 (390)
T ss_dssp GGCCCSEEEEESCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTC
T ss_pred ccCCceEEEecCCchhhCCh----hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc--CCHHHhcCC
Confidence 46899999999999888766 557889999999999999998888899999999999999999954 555678999
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeE
Q 038149 175 RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL 254 (844)
Q Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L 254 (844)
++|++|++++|.++ .++...+.++++|++|++++|.+++..+..|+++++|++|++++|.++ .++ +..+++|++|
T Consensus 117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L 191 (390)
T 3o6n_A 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHA 191 (390)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEE
T ss_pred CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---ccccccccee
Confidence 99999999999998 677766899999999999999999888888999999999999999998 454 6678999999
Q ss_pred ecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCccc
Q 038149 255 SLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLV 334 (844)
Q Consensus 255 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 334 (844)
++++|.+.+ +...+.|+.|++++|.+....... ..+|+.|++++|.+++. .++..+++|++|++++|.+.
T Consensus 192 ~l~~n~l~~------~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 192 NVSYNLLST------LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp ECCSSCCSE------EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ecccccccc------cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence 999998864 344568899999998877654332 35788889988888764 57888888888888888888
Q ss_pred ccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccc
Q 038149 335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM 414 (844)
Q Consensus 335 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 414 (844)
+..|..+. .+++|+.|++++|.+++....... +++|++|++++|+++ .+|..+
T Consensus 262 ~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-------------------------l~~L~~L~L~~n~l~-~~~~~~ 314 (390)
T 3o6n_A 262 KIMYHPFV-KMQRLERLYISNNRLVALNLYGQP-------------------------IPTLKVLDLSHNHLL-HVERNQ 314 (390)
T ss_dssp EEESGGGT-TCSSCCEEECCSSCCCEEECSSSC-------------------------CTTCCEEECCSSCCC-CCGGGH
T ss_pred CcChhHcc-ccccCCEEECCCCcCcccCcccCC-------------------------CCCCCEEECCCCcce-ecCccc
Confidence 77666554 566666666666655543222222 556666666666665 445555
Q ss_pred cccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCC
Q 038149 415 GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG 457 (844)
Q Consensus 415 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 457 (844)
..+++|++|++++|.++ .++ +..+++|++|++++|.+..
T Consensus 315 ~~l~~L~~L~L~~N~i~-~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIV-TLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp HHHTTCSEEECCSSCCC-CCC---CCTTCCCSEEECCSSCEEH
T ss_pred cccCcCCEEECCCCccc-eeC---chhhccCCEEEcCCCCccc
Confidence 56666666666666664 333 2455666666666666554
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.2e-32 Score=296.51 Aligned_cols=304 Identities=20% Similarity=0.312 Sum_probs=187.1
Q ss_pred CCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEe
Q 038149 393 LPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFL 472 (844)
Q Consensus 393 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 472 (844)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. +.+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4566666666666652 33 3556666666666666664 3333 45566666666666655542 245555555555
Q ss_pred cCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCc
Q 038149 473 FLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLY 552 (844)
Q Consensus 473 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 552 (844)
++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~--------------- 175 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IAN--------------- 175 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGG---------------
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hcc---------------
Confidence 555555553322 4455555555555554332222 24555555555555555443222 334
Q ss_pred ccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149 553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH 632 (844)
Q Consensus 553 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 632 (844)
+++|+.|++++|.+++. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..
T Consensus 176 --------l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~ 241 (347)
T 4fmz_A 176 --------LTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241 (347)
T ss_dssp --------CTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred --------CCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence 44555555555555432 22 6667777777777777775444 6677777777777777774433 677
Q ss_pred CCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEE
Q 038149 633 LRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLD 712 (844)
Q Consensus 633 l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 712 (844)
+++|+.|++++|.+++. ..+.. +++|++|+
T Consensus 242 l~~L~~L~l~~n~l~~~--~~~~~------------------------------------------------l~~L~~L~ 271 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI--NAVKD------------------------------------------------LTKLKMLN 271 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTT------------------------------------------------CTTCCEEE
T ss_pred CCCCCEEECCCCccCCC--hhHhc------------------------------------------------CCCcCEEE
Confidence 77778888887777642 12221 45677888
Q ss_pred eecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCccc
Q 038149 713 LSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS 791 (844)
Q Consensus 713 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 791 (844)
+++|++++ +| .+..+++|+.|++++|.+++..|..++.+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 272 l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 272 VGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888874 33 47778888888888888888788888888888888888888886655 777888888888888774
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-32 Score=318.12 Aligned_cols=311 Identities=22% Similarity=0.257 Sum_probs=244.0
Q ss_pred CCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCC
Q 038149 95 PFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNL 174 (844)
Q Consensus 95 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 174 (844)
.+++++.|++++|.+..+++ ..+..+++|++|+|++|.+.+..+..|+.+++|++|+|++|.++. +++..|+++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNV 122 (597)
T ss_dssp GGCCCSEEEESSCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTC
T ss_pred cCCCceEEEeeCCCCCCcCH----HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC--CCHHHHcCC
Confidence 46789999999999988776 567889999999999999999888999999999999999999954 555778999
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeE
Q 038149 175 RNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYL 254 (844)
Q Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L 254 (844)
++|++|+|++|.++ .++...|.++++|++|+|++|.+++..|..|+++++|++|++++|.++ .++ +..+++|++|
T Consensus 123 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~~L 197 (597)
T 3oja_B 123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHA 197 (597)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCSEE
T ss_pred CCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhhhh
Confidence 99999999999998 677777899999999999999999988989999999999999999998 455 5678999999
Q ss_pred ecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCccc
Q 038149 255 SLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLV 334 (844)
Q Consensus 255 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 334 (844)
++++|.+.+ +.....|+.|++++|.+........ .+|+.|++++|.+++ +.++..+++|++|++++|.+.
T Consensus 198 ~l~~n~l~~------l~~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 198 NVSYNLLST------LAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp ECCSSCCSE------EECCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred hcccCcccc------ccCCchhheeeccCCcccccccccC--CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 999998874 4455689999999998775544332 478899999998886 467888889999999999888
Q ss_pred ccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccc
Q 038149 335 DTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSM 414 (844)
Q Consensus 335 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 414 (844)
+..|..+. .+++|+.|++++|.+++. |..+. .+++|++|++++|.++ .+|..+
T Consensus 268 ~~~~~~~~-~l~~L~~L~Ls~N~l~~l------------------------~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~ 320 (597)
T 3oja_B 268 KIMYHPFV-KMQRLERLYISNNRLVAL------------------------NLYGQ-PIPTLKVLDLSHNHLL-HVERNQ 320 (597)
T ss_dssp EEESGGGT-TCSSCCEEECTTSCCCEE------------------------ECSSS-CCTTCCEEECCSSCCC-CCGGGH
T ss_pred CCCHHHhc-CccCCCEEECCCCCCCCC------------------------Ccccc-cCCCCcEEECCCCCCC-ccCccc
Confidence 77776664 566666665555555443 22222 2566666666666666 456666
Q ss_pred cccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCC
Q 038149 415 GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDG 457 (844)
Q Consensus 415 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 457 (844)
..+++|++|++++|.+++ ++ +..+++|+.|++++|.+.+
T Consensus 321 ~~l~~L~~L~L~~N~l~~-~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp HHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCSSCEEH
T ss_pred ccCCCCCEEECCCCCCCC-cC---hhhcCCCCEEEeeCCCCCC
Confidence 666666777777666653 33 2455667777777776654
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.4e-32 Score=293.40 Aligned_cols=305 Identities=22% Similarity=0.323 Sum_probs=238.7
Q ss_pred CCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCc
Q 038149 367 SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLE 446 (844)
Q Consensus 367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 446 (844)
.+++|++|+++++.+. .++. +. .+++|++|++++|.+++ ++. +..+++|++|++++|.++ .++. +..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred hcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence 5789999999999987 4554 33 48999999999999985 444 999999999999999997 4553 68999999
Q ss_pred EEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCc
Q 038149 447 FMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS 526 (844)
Q Consensus 447 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~ 526 (844)
+|++++|.+.+..+ +..+++|++|++++|......+. +..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 99999999987543 88999999999999976655444 8899999999999999986543 8899999999999999
Q ss_pred ccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhh
Q 038149 527 FEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLI 606 (844)
Q Consensus 527 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l 606 (844)
+.+..+ +..+++|+++++++|.+.+.. + +..+++|++|++++|++++..+ +
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~-----------------------~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDIT-----------------------P--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCG-----------------------G--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred cccccc--ccCCCccceeecccCCCCCCc-----------------------h--hhcCCcCCEEEccCCccCCCcc--h
Confidence 875443 666777777777776654322 2 5566677777777777765433 6
Q ss_pred hCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccc
Q 038149 607 NEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQR 686 (844)
Q Consensus 607 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (844)
..+++|++|++++|++++. ..+..+++|+.|++++|++++. | .+..
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~------------------------------ 285 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNN------------------------------ 285 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGG------------------------------
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcC------------------------------
Confidence 6777777777777777643 4577778888888888877643 2 2222
Q ss_pred eeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcc
Q 038149 687 VEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKL 766 (844)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 766 (844)
+++|+.|++++|++++..|..++.+++|++|++++|.+++..| ++.+++|+.||+++|.+
T Consensus 286 ------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 286 ------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp ------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 4678888999998888888888889999999999999987666 88889999999999987
Q ss_pred c
Q 038149 767 N 767 (844)
Q Consensus 767 ~ 767 (844)
+
T Consensus 346 ~ 346 (347)
T 4fmz_A 346 K 346 (347)
T ss_dssp -
T ss_pred c
Confidence 5
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=7.2e-35 Score=329.29 Aligned_cols=255 Identities=19% Similarity=0.162 Sum_probs=146.1
Q ss_pred CCCCEEEccCCcccccCChhhhcCCCCccEEEccCCcCCC----CCCccccccccCcEEeccCCcCCCCCChhhhhcCC-
Q 038149 369 RNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQNSFEG----SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCV- 443 (844)
Q Consensus 369 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~- 443 (844)
++|++|++++|.+.......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4566777777776654444434457788888888888764 24556677788888888888876544555555555
Q ss_pred ---CCcEEeCcCcccCC----cCCccccCCCCcCEecCCCCcCcccccccc-----cCCCCCcEEEccCcccCcC----C
Q 038149 444 ---SLEFMNLSHNYFDG----QIFPKYMNLAKLVFLFLNDNQFTGRLEVGL-----LNASSLYVLDVSNNMLSGQ----L 507 (844)
Q Consensus 444 ---~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~ls~n~l~~~----~ 507 (844)
+|++|++++|+++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|++++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 58888888887764 345666777777777777777764433322 1245677777777777653 2
Q ss_pred ChhhhcCCCCCEEeCCCCcccccCCcccc-----CCCCCCEEecCCCcCccc----CCCCC-CCCCCcEEECCCCccccc
Q 038149 508 PRWIGKFSNLDVLLMSRNSFEGDVSVQLS-----NLEVARILDISENKLYGP----LEFSS-NHSSLRYLFPHNNSLSGT 577 (844)
Q Consensus 508 p~~l~~l~~L~~L~ls~n~l~~~~~~~l~-----~l~~L~~L~ls~n~l~~~----~~~~~-~~~~L~~L~l~~n~l~~~ 577 (844)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+... ++..+ .+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 45556667777777777776544333332 244566666666655432 11111 334444444444444332
Q ss_pred c-----CccccCCCCCCEEECCCCcCCcc----cchhhhCCCCCCEEEccCCccc
Q 038149 578 I-----PNALLQSSQLTTLDLRDNEFSGN----IAHLINEDSNLRALLLRGNNLQ 623 (844)
Q Consensus 578 ~-----p~~l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~ 623 (844)
. +..+..+++|++|++++|++++. ++..+..+++|++|++++|+++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 1 11111344444444444444432 3333444444444444444443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8.8e-31 Score=281.67 Aligned_cols=290 Identities=20% Similarity=0.221 Sum_probs=195.4
Q ss_pred cCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEc
Q 038149 419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDV 498 (844)
Q Consensus 419 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 498 (844)
+++.++++++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 6788888888875 677644 357778888888777766667777777777777777777766777777777777777
Q ss_pred cCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccccc
Q 038149 499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTI 578 (844)
Q Consensus 499 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 578 (844)
++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. .+..
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~ 165 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---------------------SGFE 165 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---------------------GGSC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---------------------CCCC
Confidence 777776 4454433 677777777777766555566666666666666666532 1133
Q ss_pred CccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccc
Q 038149 579 PNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNIS 658 (844)
Q Consensus 579 p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 658 (844)
+..+..+ +|++|++++|++++ +|..+. ++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-- 239 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-- 239 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--
T ss_pred cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--
Confidence 4444444 56666666666654 343332 56777777777777666666777777777777777777655555543
Q ss_pred cccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEecc
Q 038149 659 LWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLS 738 (844)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 738 (844)
+++|++|+|++|+++ .+|..++.+++|++|+++
T Consensus 240 ----------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 240 ----------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp ----------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred ----------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 346677777777777 677777777778888888
Q ss_pred CcccccccCcccccc------cCCCEEeCCCCccc--ccCCccccCCCCCCEEEccCCc
Q 038149 739 NNFLSGSIPRSFSNL------KMTESMDLSYNKLN--GQIPPELGELSFLAIFNVSYNN 789 (844)
Q Consensus 739 ~N~l~~~ip~~l~~l------~~L~~L~Ls~N~l~--~~ip~~l~~l~~L~~L~ls~N~ 789 (844)
+|++++..+..|... .+|+.|++++|.+. +..|..+..++.|+.+++++|+
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888776666666543 56778888888776 5667777778888888887774
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.4e-30 Score=278.26 Aligned_cols=294 Identities=23% Similarity=0.265 Sum_probs=227.2
Q ss_pred CccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecC
Q 038149 395 ELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFL 474 (844)
Q Consensus 395 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 474 (844)
+++.++++++.++ .+|..+. ++|++|++++|.+++ ++...+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5888888888887 6666553 688899999998864 54444578899999999999998888888889999999999
Q ss_pred CCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccc--ccCCccccCCCCCCEEecCCCcCc
Q 038149 475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFE--GDVSVQLSNLEVARILDISENKLY 552 (844)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~--~~~~~~l~~l~~L~~L~ls~n~l~ 552 (844)
++|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999988 4555443 89999999999999777777899999999999999986 3677778777 8999999999987
Q ss_pred ccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149 553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH 632 (844)
Q Consensus 553 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 632 (844)
+. |... .++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 186 ~l-~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 186 GI-PKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp SC-CSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred cc-Cccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 63 3322 368888899999888877788888889999999999988877778888889999999999888 77888888
Q ss_pred CCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEE
Q 038149 633 LRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLD 712 (844)
Q Consensus 633 l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 712 (844)
+++|+.|++++|++++..+..|..... ......++.|+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~------------------------------------------~~~~~~l~~L~ 300 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGF------------------------------------------GVKRAYYNGIS 300 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSC------------------------------------------CSSSCCBSEEE
T ss_pred CccCCEEECCCCCCCccChhHcccccc------------------------------------------ccccccccceE
Confidence 888888888888888655555543210 00023566677
Q ss_pred eecCccc--CCCCchhhhccccCeEeccCcc
Q 038149 713 LSSNELT--GDIPSEIGYLGEIHALNLSNNF 741 (844)
Q Consensus 713 Ls~N~l~--g~ip~~l~~l~~L~~L~Ls~N~ 741 (844)
+++|.+. +..|..+..+++|+.|++++|+
T Consensus 301 l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eecCcccccccCcccccccchhhhhhccccc
Confidence 7777765 4555566666666666666653
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.1e-30 Score=277.24 Aligned_cols=291 Identities=20% Similarity=0.234 Sum_probs=163.9
Q ss_pred cCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEc
Q 038149 419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDV 498 (844)
Q Consensus 419 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 498 (844)
+++.++++++.++ .+|..+ .+.+++|++++|++++..+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3455555555553 344322 244555555555555544445555555555555555555554555555555555555
Q ss_pred cCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccccc
Q 038149 499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTI 578 (844)
Q Consensus 499 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 578 (844)
++|+++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. .+..
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~ 163 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---------------------SGIE 163 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---------------------GGBC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc---------------------cCcC
Confidence 555555 3333322 455555555555555444455555555555555554421 1133
Q ss_pred CccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccc
Q 038149 579 PNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNIS 658 (844)
Q Consensus 579 p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 658 (844)
+..+..+++|++|++++|+++. +|..+. ++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 238 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-- 238 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--
T ss_pred hhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--
Confidence 4445555555555555555553 333222 56666666666666555666666666666666666666554444433
Q ss_pred cccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEecc
Q 038149 659 LWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLS 738 (844)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 738 (844)
+++|++|+|++|+++ .+|..+..+++|++|+++
T Consensus 239 ----------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 239 ----------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp ----------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred ----------------------------------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 345666777777776 666667777777777777
Q ss_pred CcccccccCccccc------ccCCCEEeCCCCcccc--cCCccccCCCCCCEEEccCCc
Q 038149 739 NNFLSGSIPRSFSN------LKMTESMDLSYNKLNG--QIPPELGELSFLAIFNVSYNN 789 (844)
Q Consensus 739 ~N~l~~~ip~~l~~------l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~ls~N~ 789 (844)
+|++++..+..|.. ...|+.|++++|.+.. ..|..+..+..++.+++++|+
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77777655555543 3667777777777653 455677777777777777774
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.2e-29 Score=272.70 Aligned_cols=295 Identities=19% Similarity=0.200 Sum_probs=210.3
Q ss_pred CccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecC
Q 038149 395 ELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFL 474 (844)
Q Consensus 395 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 474 (844)
+++.++++++.++ .+|..+. +.+++|++++|.++ .++...+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4566666666665 4454432 46677777777775 344434466777777777777777666677777777777777
Q ss_pred CCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccc--cCCccccCCCCCCEEecCCCcCc
Q 038149 475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEG--DVSVQLSNLEVARILDISENKLY 552 (844)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~ 552 (844)
++|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 777776 3444442 678888888888887767778888888888888888753 56677888888888888888876
Q ss_pred ccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149 553 GPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH 632 (844)
Q Consensus 553 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 632 (844)
.. |... .++|+.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 185 ~l-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 185 TI-PQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp SC-CSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred cC-Cccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 43 3222 278888888888888887888889999999999999998877778888999999999999988 78888888
Q ss_pred CCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEE
Q 038149 633 LRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLD 712 (844)
Q Consensus 633 l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 712 (844)
+++|++|++++|++++..+..|..... ......++.|+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~------------------------------------------~~~~~~l~~l~ 299 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGY------------------------------------------NTKKASYSGVS 299 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSC------------------------------------------CTTSCCCSEEE
T ss_pred CCCcCEEECCCCcCCccChhhcCCccc------------------------------------------ccccccccceE
Confidence 999999999999988655555543210 00124566777
Q ss_pred eecCcccC--CCCchhhhccccCeEeccCcc
Q 038149 713 LSSNELTG--DIPSEIGYLGEIHALNLSNNF 741 (844)
Q Consensus 713 Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~ 741 (844)
+++|.+.. ..|..+..+..++.++|++|+
T Consensus 300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred eecCcccccccCccccccccceeEEEecccC
Confidence 77777652 345566666667777776664
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.6e-33 Score=315.38 Aligned_cols=391 Identities=16% Similarity=0.112 Sum_probs=232.6
Q ss_pred CcccEEEccCCCCCcCcCh-hhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEE
Q 038149 297 FQLKVLNLRHCNISGTIPR-FLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLV 375 (844)
Q Consensus 297 ~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 375 (844)
++|++|++++|+++..... .+..+++|++|++++|++.+.....+.. ....+++|++|+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~--------------------~l~~~~~L~~L~ 62 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS--------------------ALRVNPALAELN 62 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH--------------------HHHTCTTCCEEE
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH--------------------HHHhCCCcCEEe
Confidence 3577888888887654433 3677788888888888776432211110 011335566666
Q ss_pred ccCCcccccCChhhhcCCC----CccEEEccCCcCCC----CCCccccccccCcEEeccCCcCCCCCChhhhh----cCC
Q 038149 376 ISNNSFIGKLPENFGLILP----ELVYLDMSQNSFEG----SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLT----SCV 443 (844)
Q Consensus 376 l~~n~l~~~~p~~~~~~l~----~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----~l~ 443 (844)
+++|.+.+..+..+...++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. ..+
T Consensus 63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 6666655544444444444 68888888888774 34667778888888888888876433333222 244
Q ss_pred CCcEEeCcCcccCCcC----CccccCCCCcCEecCCCCcCccccccccc-----CCCCCcEEEccCcccCcC----CChh
Q 038149 444 SLEFMNLSHNYFDGQI----FPKYMNLAKLVFLFLNDNQFTGRLEVGLL-----NASSLYVLDVSNNMLSGQ----LPRW 510 (844)
Q Consensus 444 ~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~----~p~~ 510 (844)
+|++|++++|++++.. +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 6777777777776532 33444556666677766666543333222 244666666666666542 3455
Q ss_pred hhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccc----cCccccCC
Q 038149 511 IGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGT----IPNALLQS 585 (844)
Q Consensus 511 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~----~p~~l~~l 585 (844)
+..+++|++|++++|.+.+.....+. +... .+++|++|++++|.+++. ++..+..+
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred HHhCCCccEEeccCCcCChHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 55566666666666655432111100 0000 244555555556655543 56777788
Q ss_pred CCCCEEECCCCcCCcccchhhhC-----CCCCCEEEccCCccccc----CCcccCCCCCCCEEEcCCCccccCCCchhhc
Q 038149 586 SQLTTLDLRDNEFSGNIAHLINE-----DSNLRALLLRGNNLQGN----IPEPLCHLRKLAIVDISYNTLNGPIPSCFTN 656 (844)
Q Consensus 586 ~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 656 (844)
++|++|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|+.|++++|++++..+..+..
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 89999999999887655544433 26888888888887754 4556666778888888888776544443332
Q ss_pred cccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccC----CCCchhhhcccc
Q 038149 657 ISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG----DIPSEIGYLGEI 732 (844)
Q Consensus 657 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g----~ip~~l~~l~~L 732 (844)
.- . ...+.|++|+|++|++++ .+|..+..+++|
T Consensus 364 ~l------------------------------------------~-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 364 GL------------------------------------------G-QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp HH------------------------------------------T-STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred HH------------------------------------------c-CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 10 0 002467777777777775 667777777777
Q ss_pred CeEeccCcccccccCcccc-----cccCCCEEeCCCCccccc
Q 038149 733 HALNLSNNFLSGSIPRSFS-----NLKMTESMDLSYNKLNGQ 769 (844)
Q Consensus 733 ~~L~Ls~N~l~~~ip~~l~-----~l~~L~~L~Ls~N~l~~~ 769 (844)
++|++++|++++.-...+. ...+|+.|++.++.....
T Consensus 401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 7777777777654222221 123455555555554433
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=8.6e-31 Score=280.28 Aligned_cols=281 Identities=19% Similarity=0.202 Sum_probs=172.5
Q ss_pred CCCcHHHHHHHHHhhhcccccccccccccccCCCc---CCCCCCCCCCCceEecCCCCceEEEeeCcCcccCCCCCCCCC
Q 038149 9 KSCLDSERIGLLEIKAFIKSVSDMQYADAILVSWV---DNRTSDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGF 85 (844)
Q Consensus 9 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~---~~~~~~~C~w~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~ 85 (844)
..+..+|++||++||+++.. ++. +.+++|. .. ..++|.|.|+.|......+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~---~~~--~~~~~w~~~~~~-~~~~~~~~g~~~~~~~~~l-------------------- 75 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNA---DRN--RWHSAWRQANSN-NPQIETRTGRALKATADLL-------------------- 75 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHH---CCT--THHHHHHHHTTT-CTTSCCSHHHHHHHHHHHH--------------------
T ss_pred cccCchHHHHHHHHHHhccC---Cch--hhhhhhcccccc-cccccccCCcchhhhHHHH--------------------
Confidence 34677899999999999854 233 5678894 22 4689999999996310000
Q ss_pred cccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCC
Q 038149 86 PIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGF 165 (844)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 165 (844)
.....+++++|+|++|.+..++ ..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .
T Consensus 76 ------~~~~~~~l~~L~L~~n~l~~lp-----~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~ 141 (328)
T 4fcg_A 76 ------EDATQPGRVALELRSVPLPQFP-----DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--A 141 (328)
T ss_dssp ------HHHTSTTCCEEEEESSCCSSCC-----SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--C
T ss_pred ------hcccccceeEEEccCCCchhcC-----hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--c
Confidence 0011234444555555544332 23444566666666666665 45555666666666666666654 2
Q ss_pred cCcccccCCCCCCEEEccCCcCCCCCccc--------ccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCC
Q 038149 166 KHNKGLVNLRNLEVLDLSGNRITGSLIMQ--------GICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLS 237 (844)
Q Consensus 166 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 237 (844)
+| ..+.++++|++|++++|.+.+.++.. .+.++++|++|++++|.++ .+|..++++++|++|++++|.++
T Consensus 142 lp-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 142 LP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp CC-GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred Cc-HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 44 34566666666666665555444432 1234677777777777776 56666777777777777777776
Q ss_pred CCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhh
Q 038149 238 GNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFL 317 (844)
Q Consensus 238 ~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 317 (844)
.+| ..+..+++|++|++++|.+.+.+|. .+..++ +|++|++++|.+.+.+|..+
T Consensus 220 -~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~-----------------------~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 220 -ALG-PAIHHLPKLEELDLRGCTALRNYPP-IFGGRA-----------------------PLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp -CCC-GGGGGCTTCCEEECTTCTTCCBCCC-CTTCCC-----------------------CCCEEECTTCTTCCBCCTTG
T ss_pred -cCc-hhhccCCCCCEEECcCCcchhhhHH-HhcCCC-----------------------CCCEEECCCCCchhhcchhh
Confidence 455 4566777777777777766665552 233333 34455556666666677777
Q ss_pred hcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcc
Q 038149 318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFL 358 (844)
Q Consensus 318 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l 358 (844)
..+++|++|++++|++.+.+|.++. .+++|+.+.+..+.+
T Consensus 274 ~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQ 313 (328)
T ss_dssp GGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECCGGGS
T ss_pred hcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCCHHHH
Confidence 7777788888888777777777765 666666666655443
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.3e-28 Score=261.66 Aligned_cols=251 Identities=22% Similarity=0.247 Sum_probs=175.7
Q ss_pred CEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCccccc--CCccccCCCCCCEEecC
Q 038149 470 VFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGD--VSVQLSNLEVARILDIS 547 (844)
Q Consensus 470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~--~~~~l~~l~~L~~L~ls 547 (844)
+.++.+++.++ .+|..+ .++|++|++++|+++...+..|..+++|++|++++|.++.. .+..+..+++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L------ 80 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL------ 80 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC------
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc------
Confidence 35666666665 334333 25666666666666643334456666666666666665522 23334444444
Q ss_pred CCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccc-hhhhCCCCCCEEEccCCcccccC
Q 038149 548 ENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA-HLINEDSNLRALLLRGNNLQGNI 626 (844)
Q Consensus 548 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~ 626 (844)
++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..
T Consensus 81 -----------------~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 81 -----------------KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp -----------------CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred -----------------CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 45555555554 455667777788888888887775544 56777788888888888888777
Q ss_pred CcccCCCCCCCEEEcCCCcccc-CCCchhhccccccccCcccccccccCCCcccccccccceeeeeeecccccccccccc
Q 038149 627 PEPLCHLRKLAIVDISYNTLNG-PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVL 705 (844)
Q Consensus 627 p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 705 (844)
|..+..+++|+.|++++|.+++ .+|..+.. +
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------------------------l 174 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------------------------------------------L 174 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTT------------------------------------------------C
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhh------------------------------------------------C
Confidence 7778888888888888888775 45555543 4
Q ss_pred ccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCC-CCCEEE
Q 038149 706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS-FLAIFN 784 (844)
Q Consensus 706 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ 784 (844)
++|++|+|++|++++..|..+..+++|++|+|++|.+++..+..+..+++|+.|||++|++++..|..+..++ +|++|+
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 5678888888888877788888888888888888888877777788888888888888888888888888884 888888
Q ss_pred ccCCcccccCC
Q 038149 785 VSYNNLSGTVP 795 (844)
Q Consensus 785 ls~N~l~g~ip 795 (844)
+++|++++..+
T Consensus 255 L~~N~~~~~c~ 265 (306)
T 2z66_A 255 LTQNDFACTCE 265 (306)
T ss_dssp CTTCCEECSGG
T ss_pred ccCCCeecccC
Confidence 88888887644
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-28 Score=266.92 Aligned_cols=280 Identities=16% Similarity=0.147 Sum_probs=178.2
Q ss_pred CCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEe
Q 038149 442 CVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLL 521 (844)
Q Consensus 442 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 521 (844)
|+.....+++++.++.. |..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 44445566666666532 33222 3566666666666654444556666666666666666655555566666666666
Q ss_pred CCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccC-ccccCCCCCCEEECCCC-cCC
Q 038149 522 MSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIP-NALLQSSQLTTLDLRDN-EFS 599 (844)
Q Consensus 522 ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~ 599 (844)
+++|.+++..+..+..+++|++|++++|++ ++..+ ..+..+++|++|++++| .+.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----------------------~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-----------------------KTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCC-----------------------SSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCC-----------------------cccCchhhhccCCCCcEEECCCCcccc
Confidence 666666544333455555555555555554 42222 25666677777777776 355
Q ss_pred cccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccc
Q 038149 600 GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAED 679 (844)
Q Consensus 600 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 679 (844)
+..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~----------------------- 219 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD----------------------- 219 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHH-----------------------
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhh-----------------------
Confidence 555566777777777777777777777777777777777777777764 33332211
Q ss_pred ccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhh---hccccCeEeccCccccc----ccCccccc
Q 038149 680 NRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIG---YLGEIHALNLSNNFLSG----SIPRSFSN 752 (844)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~l~~ 752 (844)
.+++|+.|++++|++++..+..+. ....++.++|+++.+++ .+|..+++
T Consensus 220 ------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 220 ------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275 (353)
T ss_dssp ------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred ------------------------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence 135677778888877765544433 34566777777777765 47778888
Q ss_pred ccCCCEEeCCCCcccccCCcc-ccCCCCCCEEEccCCcccccCCC
Q 038149 753 LKMTESMDLSYNKLNGQIPPE-LGELSFLAIFNVSYNNLSGTVPN 796 (844)
Q Consensus 753 l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~ 796 (844)
+++|+.||+++|+++ .+|.. +..+++|++|++++|++.|.+|.
T Consensus 276 l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 276 ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 888999999999888 56665 48888999999999998887774
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=254.10 Aligned_cols=227 Identities=21% Similarity=0.216 Sum_probs=99.1
Q ss_pred cEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCc--CCccccCCCCcCEecC
Q 038149 397 VYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQ--IFPKYMNLAKLVFLFL 474 (844)
Q Consensus 397 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 474 (844)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..++..+++|++|++++|+++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 34555555555 3443332 35555555555554 44444445555555555555555422 1233334444444444
Q ss_pred CCCcCcccccccccCCCCCcEEEccCcccCcCCC-hhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcc
Q 038149 475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLP-RWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYG 553 (844)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 553 (844)
++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---- 160 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN---- 160 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC----
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC----
Confidence 444444 233334444444444444444443222 23344444444444444443333333333333333333333
Q ss_pred cCCCCCCCCCCcEEECCCCcccc-ccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCC
Q 038149 554 PLEFSSNHSSLRYLFPHNNSLSG-TIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCH 632 (844)
Q Consensus 554 ~~~~~~~~~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 632 (844)
.+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..
T Consensus 161 -------------------~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 161 -------------------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp -------------------EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred -------------------ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 3332 23344444444444444444444443444444444444444444444333333444
Q ss_pred CCCCCEEEcCCCccccCCC
Q 038149 633 LRKLAIVDISYNTLNGPIP 651 (844)
Q Consensus 633 l~~L~~L~Ls~N~l~~~~p 651 (844)
+++|+.|++++|++++..|
T Consensus 222 l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CTTCCEEECTTSCCCBCSS
T ss_pred cccCCEeECCCCCCcccCH
Confidence 4444444444444443333
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.7e-28 Score=259.03 Aligned_cols=234 Identities=19% Similarity=0.224 Sum_probs=134.7
Q ss_pred CCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEec
Q 038149 467 AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDI 546 (844)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 546 (844)
+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45555555555555 44444555555555555555555 45555555555555555555555 44545555555555555
Q ss_pred CCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccC
Q 038149 547 SENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNI 626 (844)
Q Consensus 547 s~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 626 (844)
++|.+.+.+|..+. .. .++..+ ..+++|++|+|++|+++ .+
T Consensus 158 ~~n~~~~~~p~~~~-----~~---------~~~~~~------------------------~~l~~L~~L~L~~n~l~-~l 198 (328)
T 4fcg_A 158 RACPELTELPEPLA-----ST---------DASGEH------------------------QGLVNLQSLRLEWTGIR-SL 198 (328)
T ss_dssp EEETTCCCCCSCSE-----EE---------C-CCCE------------------------EESTTCCEEEEEEECCC-CC
T ss_pred CCCCCccccChhHh-----hc---------cchhhh------------------------ccCCCCCEEECcCCCcC-cc
Confidence 55444433332210 00 011122 23555555555555555 55
Q ss_pred CcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccc
Q 038149 627 PEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLK 706 (844)
Q Consensus 627 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 706 (844)
|..+..+++|+.|++++|++++ +|..++. ++
T Consensus 199 p~~l~~l~~L~~L~L~~N~l~~-l~~~l~~------------------------------------------------l~ 229 (328)
T 4fcg_A 199 PASIANLQNLKSLKIRNSPLSA-LGPAIHH------------------------------------------------LP 229 (328)
T ss_dssp CGGGGGCTTCCEEEEESSCCCC-CCGGGGG------------------------------------------------CT
T ss_pred hHhhcCCCCCCEEEccCCCCCc-Cchhhcc------------------------------------------------CC
Confidence 5555556666666666666553 3333433 34
Q ss_pred cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEcc
Q 038149 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVS 786 (844)
Q Consensus 707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls 786 (844)
+|++|+|++|++.+.+|..++.+++|++|+|++|++.+.+|..++++++|+.|+|++|++.+.+|..+..+++|+.+++.
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 56666666666666667667777777777777777777777777777777777777777777777777777777777776
Q ss_pred CCccc
Q 038149 787 YNNLS 791 (844)
Q Consensus 787 ~N~l~ 791 (844)
.|.+.
T Consensus 310 ~~~~~ 314 (328)
T 4fcg_A 310 PHLQA 314 (328)
T ss_dssp GGGSC
T ss_pred HHHHH
Confidence 65543
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.3e-30 Score=299.09 Aligned_cols=400 Identities=12% Similarity=0.025 Sum_probs=192.6
Q ss_pred hcCCCCCEEEccCCcccccCchhHhhcCCC-CcEEEcCCCcccccc---cCCCCCCCCCEEEccCCcccccCChh---hh
Q 038149 318 QYQYDFRYIDLSDNNLVDTFPTWLLQNNTK-LEIMFLFNNFLTGNL---QLPNSKRNLPHLVISNNSFIGKLPEN---FG 390 (844)
Q Consensus 318 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~-L~~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~n~l~~~~p~~---~~ 390 (844)
..+++|++|++++|.+++..+.++...++. |+.|++++|...... .+...+++|++|++++|.+.+.-..+ +.
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 367778888888777766666655533333 666665555411100 01113445555555555443331111 11
Q ss_pred cCCCCccEEEccCCcCCC----CCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCC
Q 038149 391 LILPELVYLDMSQNSFEG----SIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNL 466 (844)
Q Consensus 391 ~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 466 (844)
..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+ ++. .+..+++|++|+++.......
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~-------- 258 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIG-------- 258 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTT--------
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccc--------
Confidence 224555555555555541 122223344555555555555432 332 234445555555543211100
Q ss_pred CCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCC-ccccCCCCCCEEe
Q 038149 467 AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS-VQLSNLEVARILD 545 (844)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ 545 (844)
.+..+..+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+
T Consensus 259 -------------~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 259 -------------MPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp -------------CTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred -------------hHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 011222334444555555554322 2344444455555555555555433222 2234455555555
Q ss_pred cCCCcCcccCCCCC-CCCCCcEEECCC-----------Cccccc-cCccccCCCCCCEEECCCCcCCcccchhhhC-CCC
Q 038149 546 ISENKLYGPLEFSS-NHSSLRYLFPHN-----------NSLSGT-IPNALLQSSQLTTLDLRDNEFSGNIAHLINE-DSN 611 (844)
Q Consensus 546 ls~n~l~~~~~~~~-~~~~L~~L~l~~-----------n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~ 611 (844)
++++...+.++... .+++|++|++++ +.+++. ++.....+++|++|+++.|.+++..+..+.. +++
T Consensus 325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 404 (592)
T 3ogk_B 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404 (592)
T ss_dssp EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCS
T ss_pred ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCC
Confidence 54221111111111 334444444441 333322 2222344667777777666666655555544 667
Q ss_pred CCEEEcc----CCccccc-----CCcccCCCCCCCEEEcCCCc--cccCCCchhhccccccccCcccccccccCCCcccc
Q 038149 612 LRALLLR----GNNLQGN-----IPEPLCHLRKLAIVDISYNT--LNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDN 680 (844)
Q Consensus 612 L~~L~L~----~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 680 (844)
|++|+++ .|++++. ++..+..+++|+.|++++|. +++..+..++.
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~------------------------ 460 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ------------------------ 460 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH------------------------
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH------------------------
Confidence 7777774 5555532 22334556667777776543 33322222211
Q ss_pred cccccceeeeeeeccccccccccccccceEEEeecCcccC-CCCchhhhccccCeEeccCcccccc-cCcccccccCCCE
Q 038149 681 RESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG-DIPSEIGYLGEIHALNLSNNFLSGS-IPRSFSNLKMTES 758 (844)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~ 758 (844)
.+++|++|+|++|++++ .++..+..+++|++|+|++|.+++. ++..+..+++|++
T Consensus 461 -----------------------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 461 -----------------------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp -----------------------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred -----------------------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 13456777777777765 3344456667777777777776644 3333456677777
Q ss_pred EeCCCCcccccCCcccc-CCCCCCEEEccCC
Q 038149 759 MDLSYNKLNGQIPPELG-ELSFLAIFNVSYN 788 (844)
Q Consensus 759 L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N 788 (844)
|+|++|++++.-...+. .++.+....+..+
T Consensus 518 L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 518 LWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 77777776654333332 4455544444433
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=264.93 Aligned_cols=284 Identities=18% Similarity=0.165 Sum_probs=204.8
Q ss_pred ccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCC
Q 038149 414 MGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSL 493 (844)
Q Consensus 414 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 493 (844)
-..|+.....+++++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 344566667899999996 788755 3689999999999998877789999999999999999998888889999999
Q ss_pred cEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCC-ccccCCCCCCEEecCCCc-CcccCCCCC-CCCCCcEEECC
Q 038149 494 YVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS-VQLSNLEVARILDISENK-LYGPLEFSS-NHSSLRYLFPH 570 (844)
Q Consensus 494 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~-l~~~~~~~~-~~~~L~~L~l~ 570 (844)
++|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +....+..+ .+++|++|+++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 999999999997666669999999999999999985544 478888889988888884 433333322 44555555555
Q ss_pred CCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCC
Q 038149 571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPI 650 (844)
Q Consensus 571 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 650 (844)
+|++++..|..+..+++|++|++++|++....+..+.. +++|+.|++++|++++..
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV------------------------TSSVECLELRDTDLDTFH 238 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH------------------------TTTEEEEEEESCBCTTCC
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh------------------------cccccEEECCCCcccccc
Confidence 55555444555555555555555555544222222333 445555555555554433
Q ss_pred CchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccC----CCCchh
Q 038149 651 PSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTG----DIPSEI 726 (844)
Q Consensus 651 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g----~ip~~l 726 (844)
+..+.... ....++.++|+++.+++ .+|..+
T Consensus 239 ~~~l~~~~---------------------------------------------~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 239 FSELSTGE---------------------------------------------TNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp CC---------------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred cccccccc---------------------------------------------ccchhhccccccccccCcchhhhHHHH
Confidence 32221100 02345567777777765 578889
Q ss_pred hhccccCeEeccCcccccccCcc-cccccCCCEEeCCCCcccccCC
Q 038149 727 GYLGEIHALNLSNNFLSGSIPRS-FSNLKMTESMDLSYNKLNGQIP 771 (844)
Q Consensus 727 ~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip 771 (844)
+.+++|++|+|++|+++ .+|.. |+++++|++|+|++|.+++..|
T Consensus 274 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999999999999999 66666 5899999999999999997654
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1e-29 Score=296.75 Aligned_cols=381 Identities=14% Similarity=0.029 Sum_probs=267.3
Q ss_pred CCCCCCEEEccCCcccccCChhhhcCCCC-ccEEEccCCc-CCC-CCCccccccccCcEEeccCCcCCCCCCh---hhhh
Q 038149 367 SKRNLPHLVISNNSFIGKLPENFGLILPE-LVYLDMSQNS-FEG-SIPPSMGYMERLLFLDLSSNNFSRDLPK---HFLT 440 (844)
Q Consensus 367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~-L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~ 440 (844)
.+++|++|++++|.+.+..+..+...++. |++|++++|. ++. .++.....+++|++|++++|.+++.... .+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 45677777777777666555555443444 8888888876 211 1222334678888888888887654221 2446
Q ss_pred cCCCCcEEeCcCcccCCc----CCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccC---cCCChhhhc
Q 038149 441 SCVSLEFMNLSHNYFDGQ----IFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLS---GQLPRWIGK 513 (844)
Q Consensus 441 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~---~~~p~~l~~ 513 (844)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ ++..+..+++|++|+++.+... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 778888888888888632 23345578888888888888875 5667788888888888764332 234456777
Q ss_pred CCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCC--CCCCCCcEEECCCCccccccCccccCCCCCCEE
Q 038149 514 FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS--SNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTL 591 (844)
Q Consensus 514 l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~--~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 591 (844)
+++|+.|.++++. .+.+|..+..+++|++|++++|.+.+..... ..+++|+.|+++++-..+.++.....+++|++|
T Consensus 269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 8889999888753 3456777788889999999998865433321 267889999888443333445555678889999
Q ss_pred ECC-----------CCcCCcc-cchhhhCCCCCCEEEccCCcccccCCcccCC-CCCCCEEEcC----CCccccCCCc-h
Q 038149 592 DLR-----------DNEFSGN-IAHLINEDSNLRALLLRGNNLQGNIPEPLCH-LRKLAIVDIS----YNTLNGPIPS-C 653 (844)
Q Consensus 592 ~Ls-----------~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~~p~-~ 653 (844)
+++ .|.+++. ++.....+++|++|+++.|++++..+..+.. +++|+.|+++ .|.+++.... .
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 998 3566643 2333566889999999888888776666665 8888999886 5666542111 1
Q ss_pred hhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecC--cccCCCCchhhh-cc
Q 038149 654 FTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSN--ELTGDIPSEIGY-LG 730 (844)
Q Consensus 654 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N--~l~g~ip~~l~~-l~ 730 (844)
+..+ ...+++|++|+|+++ .+++..+..++. ++
T Consensus 428 ~~~~--------------------------------------------~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 428 VRSL--------------------------------------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp HHHH--------------------------------------------HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred HHHH--------------------------------------------HHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 1110 011568999999854 477776666665 89
Q ss_pred ccCeEeccCccccc-ccCcccccccCCCEEeCCCCccccc-CCccccCCCCCCEEEccCCccccc
Q 038149 731 EIHALNLSNNFLSG-SIPRSFSNLKMTESMDLSYNKLNGQ-IPPELGELSFLAIFNVSYNNLSGT 793 (844)
Q Consensus 731 ~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~N~l~g~ 793 (844)
+|++|+|++|.+++ .++..+..+++|++|++++|.+++. ++.....+++|++|++++|++++.
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 99999999999987 4566668899999999999999865 455557899999999999998754
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5.3e-29 Score=265.55 Aligned_cols=268 Identities=21% Similarity=0.198 Sum_probs=205.0
Q ss_pred cCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCC
Q 038149 469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE 548 (844)
Q Consensus 469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~ 548 (844)
++..+++.+.+.......+..+++|++|++++|++++..|..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444555555554444445555667777777777776666667777777777777777765544 66777777777777
Q ss_pred CcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCc
Q 038149 549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPE 628 (844)
Q Consensus 549 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~ 628 (844)
|.+.+.. ..++|+.|++++|++++..+.. +++|++|++++|++++..+..++.+++|++|++++|++++..+.
T Consensus 90 n~l~~l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NYVQELL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SEEEEEE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred Ccccccc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 7766433 2367888888888887655443 56789999999999887777888889999999999999887777
Q ss_pred ccC-CCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeecccccccccccccc
Q 038149 629 PLC-HLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKY 707 (844)
Q Consensus 629 ~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 707 (844)
.+. .+++|+.|++++|.+++. |... .+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~~~-------------------------------------------------~l~~ 192 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KGQV-------------------------------------------------VFAK 192 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-ECCC-------------------------------------------------CCTT
T ss_pred HHhhccCcCCEEECCCCcCccc-cccc-------------------------------------------------cccc
Confidence 664 688999999999988743 1110 1467
Q ss_pred ceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccc-ccCCccccCCCCCCEEEcc
Q 038149 708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN-GQIPPELGELSFLAIFNVS 786 (844)
Q Consensus 708 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls 786 (844)
|++|+|++|+++ .+|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus 193 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 899999999999 45666999999999999999999 68888999999999999999999 8889999999999999999
Q ss_pred -CCcccccCCCC
Q 038149 787 -YNNLSGTVPNK 797 (844)
Q Consensus 787 -~N~l~g~ip~~ 797 (844)
.+.+.|..|..
T Consensus 271 ~~~~l~~~~~~~ 282 (317)
T 3o53_A 271 TVKKLTGQNEEE 282 (317)
T ss_dssp HHHHHHSSSSCC
T ss_pred CchhccCCchhc
Confidence 55678777654
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.3e-26 Score=256.96 Aligned_cols=250 Identities=19% Similarity=0.174 Sum_probs=158.3
Q ss_pred cCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCC
Q 038149 469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE 548 (844)
Q Consensus 469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~ 548 (844)
...++.++..++ .+|..+ .+++++|++++|.+++..|..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666666665 345443 35677777777777766666677777777777777777666666666666666666666
Q ss_pred CcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCc-ccccCC
Q 038149 549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN-LQGNIP 627 (844)
Q Consensus 549 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~p 627 (844)
|.+.+ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+ +....+
T Consensus 133 n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 133 NWLTV-----------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp SCCSB-----------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CcCCc-----------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 66553 333445555556666666666554444555566666666666533 332223
Q ss_pred cccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeecccccccccccccc
Q 038149 628 EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKY 707 (844)
Q Consensus 628 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 707 (844)
..+..+++|+.|+|++|++++. |. +.. +++
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~-~~-~~~------------------------------------------------l~~ 219 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDM-PN-LTP------------------------------------------------LVG 219 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSC-CC-CTT------------------------------------------------CTT
T ss_pred hhccCCCCCCEEECCCCccccc-cc-ccc------------------------------------------------ccc
Confidence 3466666666666666666532 21 111 346
Q ss_pred ceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccC
Q 038149 708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSY 787 (844)
Q Consensus 708 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 787 (844)
|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 66777777777766677777777777777777777777777777777777777777777766666667777777777777
Q ss_pred CcccccC
Q 038149 788 NNLSGTV 794 (844)
Q Consensus 788 N~l~g~i 794 (844)
|++.+..
T Consensus 300 Np~~CdC 306 (452)
T 3zyi_A 300 NPWNCDC 306 (452)
T ss_dssp SCEECST
T ss_pred CCcCCCC
Confidence 7765543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.2e-27 Score=248.03 Aligned_cols=253 Identities=20% Similarity=0.203 Sum_probs=130.2
Q ss_pred CEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCC
Q 038149 470 VFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISEN 549 (844)
Q Consensus 470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n 549 (844)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34555555555 233322 345566666666555544455555555555555555555554555555555555555554
Q ss_pred cCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcc
Q 038149 550 KLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEP 629 (844)
Q Consensus 550 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~ 629 (844)
.. ++...|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..
T Consensus 91 ~~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 91 AQ----------------------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp TT----------------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CC----------------------ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence 41 22223444555555555555555555544555555555555555555555444444
Q ss_pred cCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccce
Q 038149 630 LCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMT 709 (844)
Q Consensus 630 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 709 (844)
+..+++|+.|++++|++++..+..|.. +++|+
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------------l~~L~ 180 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRG------------------------------------------------LHSLD 180 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTT------------------------------------------------CTTCC
T ss_pred hccCCCccEEECCCCcccccCHHHhcC------------------------------------------------ccccC
Confidence 555555555555555555333333322 23455
Q ss_pred EEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCc
Q 038149 710 GLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNN 789 (844)
Q Consensus 710 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~ 789 (844)
+|+|++|++++..|..++.+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+.. .-...++.+..+.+.
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~ 259 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSE 259 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECC
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCc
Confidence 5555555555555555555556666666666665544445555566666666666555433211 111223334455556
Q ss_pred ccccCCC
Q 038149 790 LSGTVPN 796 (844)
Q Consensus 790 l~g~ip~ 796 (844)
+.+..|.
T Consensus 260 ~~c~~p~ 266 (285)
T 1ozn_A 260 VPCSLPQ 266 (285)
T ss_dssp CBEEESG
T ss_pred cccCCch
Confidence 6555554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2e-26 Score=241.99 Aligned_cols=201 Identities=18% Similarity=0.185 Sum_probs=119.4
Q ss_pred cEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccC
Q 038149 421 LFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSN 500 (844)
Q Consensus 421 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 500 (844)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777777775 566533 46777777777777776666677777777777777777766666677777777777777
Q ss_pred cc-cCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccC
Q 038149 501 NM-LSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIP 579 (844)
Q Consensus 501 n~-l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p 579 (844)
|. +.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------- 146 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----------------------- 146 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-----------------------
Confidence 75 655556666667777777777776666556666666666666666665543333
Q ss_pred ccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCcccc
Q 038149 580 NALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNG 648 (844)
Q Consensus 580 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 648 (844)
..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 333444444444444444443333334444444444444444444444444444444444444444443
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.9e-26 Score=256.45 Aligned_cols=248 Identities=20% Similarity=0.202 Sum_probs=156.5
Q ss_pred cCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCC
Q 038149 469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE 548 (844)
Q Consensus 469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~ 548 (844)
...++..+..++ .+|..+ .++++.|++++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456667776666 455544 36677777777777766667777777777777777777766666677777777777666
Q ss_pred CcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCc-ccccCC
Q 038149 549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNN-LQGNIP 627 (844)
Q Consensus 549 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~p 627 (844)
|++.... +..|..+++|++|++++|++.+..+..+..+++|++|++++|+ +....+
T Consensus 122 n~l~~~~-----------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 122 NRLTTIP-----------------------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp SCCSSCC-----------------------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CcCCeeC-----------------------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 6665433 3344555555555555555554444455555555555555533 222223
Q ss_pred cccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeecccccccccccccc
Q 038149 628 EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKY 707 (844)
Q Consensus 628 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 707 (844)
..|..+++|+.|++++|+++ .+|. +.. +++
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~-~~~~-~~~------------------------------------------------l~~ 208 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLR-EIPN-LTP------------------------------------------------LIK 208 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCS-SCCC-CTT------------------------------------------------CSS
T ss_pred chhhcccccCeecCCCCcCc-cccc-cCC------------------------------------------------Ccc
Confidence 34556666666666666655 2221 111 345
Q ss_pred ceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccC
Q 038149 708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSY 787 (844)
Q Consensus 708 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 787 (844)
|++|||++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 66677777777766666777777777777777777766666777777777777777777766666667777777777777
Q ss_pred Ccccc
Q 038149 788 NNLSG 792 (844)
Q Consensus 788 N~l~g 792 (844)
|++.+
T Consensus 289 Np~~C 293 (440)
T 3zyj_A 289 NPWNC 293 (440)
T ss_dssp SCEEC
T ss_pred CCccC
Confidence 77654
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.9e-28 Score=258.85 Aligned_cols=269 Identities=20% Similarity=0.196 Sum_probs=193.8
Q ss_pred cCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEc
Q 038149 419 RLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDV 498 (844)
Q Consensus 419 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 498 (844)
+++..+++.+.+. ..+..++..+++|++|++++|++++..+..+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4556677777764 4455555666777777777777777666667777777777777777765443 666666777777
Q ss_pred cCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccccc
Q 038149 499 SNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTI 578 (844)
Q Consensus 499 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 578 (844)
++|++++.. ..++|++|++++|.+++..+ . .+++|+.|++++|++++..
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~------------------------~--~~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSC------------------------S--RGQGKKNIYLANNKITMLR 136 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEE------------------------C--CCSSCEEEECCSSCCCSGG
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCc------------------------c--ccCCCCEEECCCCCCCCcc
Confidence 776665321 23555556555555543322 2 1345666667777777666
Q ss_pred CccccCCCCCCEEECCCCcCCcccchhh-hCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcc
Q 038149 579 PNALLQSSQLTTLDLRDNEFSGNIAHLI-NEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNI 657 (844)
Q Consensus 579 p~~l~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 657 (844)
+..+..+++|++|++++|++++..+..+ ..+++|++|+|++|++++. | ....+++|+.|++++|++++. |..+..
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~- 212 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQS- 212 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGG-
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcc-
Confidence 7777888888888888888887777666 4688899999999988855 3 234588999999999998853 333543
Q ss_pred ccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEec
Q 038149 658 SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNL 737 (844)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 737 (844)
+++|++|+|++|+++ .+|..+..+++|+.|++
T Consensus 213 -----------------------------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 213 -----------------------------------------------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (317)
T ss_dssp -----------------------------------------------GTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred -----------------------------------------------cCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence 457889999999998 67888999999999999
Q ss_pred cCcccc-cccCcccccccCCCEEeCC-CCcccccCCcc
Q 038149 738 SNNFLS-GSIPRSFSNLKMTESMDLS-YNKLNGQIPPE 773 (844)
Q Consensus 738 s~N~l~-~~ip~~l~~l~~L~~L~Ls-~N~l~~~ip~~ 773 (844)
++|.++ +.+|..++.+++|+.|+++ .+.++|..|..
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 999998 7888899999999999999 45677766654
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.7e-28 Score=261.12 Aligned_cols=250 Identities=19% Similarity=0.220 Sum_probs=161.7
Q ss_pred ccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCccc-CcCCChhhh-------cCCCCCEEeCCCCcccccCCcc
Q 038149 463 YMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNML-SGQLPRWIG-------KFSNLDVLLMSRNSFEGDVSVQ 534 (844)
Q Consensus 463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l-~~~~p~~l~-------~l~~L~~L~ls~n~l~~~~~~~ 534 (844)
++..++|+.+++++|.+ .+|..+... |+.|++++|.+ ...+|..+. ++++|++|++++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34556677777777777 455544332 77777777777 334555544 5677777777777777666665
Q ss_pred c--cCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCC-----CCCCEEECCCCcCCcccchhhh
Q 038149 535 L--SNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS-----SQLTTLDLRDNEFSGNIAHLIN 607 (844)
Q Consensus 535 l--~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~~~~l~ 607 (844)
+ ..+++|++|++++|++.+. |..+..+ ++|++|++++|++.+..|..++
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR------------------------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS------------------------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred HHHhcCCCccEEEccCCCCcch------------------------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 4 5666666666666665543 3444433 5666666666666665556666
Q ss_pred CCCCCCEEEccCCccccc--CCccc--CCCCCCCEEEcCCCcccc--CCCchhhccccccccCcccccccccCCCccccc
Q 038149 608 EDSNLRALLLRGNNLQGN--IPEPL--CHLRKLAIVDISYNTLNG--PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNR 681 (844)
Q Consensus 608 ~l~~L~~L~L~~N~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 681 (844)
.+++|++|++++|++.+. +|..+ ..+++|+.|++++|++++ .++..+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-------------------------- 224 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA-------------------------- 224 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH--------------------------
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH--------------------------
Confidence 666666666666665543 22233 667777777777777762 1111110
Q ss_pred ccccceeeeeeeccccccccccccccceEEEeecCcccCCCC-chhhhccccCeEeccCcccccccCcccccccCCCEEe
Q 038149 682 ESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP-SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMD 760 (844)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 760 (844)
..+++|++|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+. ++|++||
T Consensus 225 ---------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~ 280 (312)
T 1wwl_A 225 ---------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLD 280 (312)
T ss_dssp ---------------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEE
T ss_pred ---------------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEE
Confidence 013567778888888877664 34556778888888888887 7777766 7788888
Q ss_pred CCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149 761 LSYNKLNGQIPPELGELSFLAIFNVSYNNLSG 792 (844)
Q Consensus 761 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 792 (844)
|++|++++. |. +..+++|++|++++|++++
T Consensus 281 Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 281 LSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 888888865 65 7788888888888888775
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.3e-27 Score=252.22 Aligned_cols=212 Identities=20% Similarity=0.251 Sum_probs=131.2
Q ss_pred cccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccC-CcCCcccc-------CCCCcCEecCCCCcCccccc
Q 038149 413 SMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFD-GQIFPKYM-------NLAKLVFLFLNDNQFTGRLE 484 (844)
Q Consensus 413 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~ 484 (844)
.++..++|++|++++|.+ .+|..+... |+.|++++|++. ..++..+. ++++|++|++++|++++.+|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 345566777777777777 566655432 677777777773 33443333 56677777777777776666
Q ss_pred ccc--cCCCCCcEEEccCcccCcCCChhhhcC-----CCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCC
Q 038149 485 VGL--LNASSLYVLDVSNNMLSGQLPRWIGKF-----SNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEF 557 (844)
Q Consensus 485 ~~~--~~l~~L~~L~ls~n~l~~~~p~~l~~l-----~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 557 (844)
..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+.++
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~- 190 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG- 190 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH-
Confidence 655 6677777777777777765 6666655 666777776666666555666666666666666555432210
Q ss_pred CCCCCCCcEEECCCCccccccCccc--cCCCCCCEEECCCCcCCc--ccc-hhhhCCCCCCEEEccCCcccccCC-cccC
Q 038149 558 SSNHSSLRYLFPHNNSLSGTIPNAL--LQSSQLTTLDLRDNEFSG--NIA-HLINEDSNLRALLLRGNNLQGNIP-EPLC 631 (844)
Q Consensus 558 ~~~~~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~--~~~-~~l~~l~~L~~L~L~~N~l~~~~p-~~l~ 631 (844)
.|..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|++++.+| ..+.
T Consensus 191 --------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 191 --------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp --------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred --------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 12223 566777777777777773 122 334566777777777777776554 3444
Q ss_pred CCCCCCEEEcCCCccccCCCc
Q 038149 632 HLRKLAIVDISYNTLNGPIPS 652 (844)
Q Consensus 632 ~l~~L~~L~Ls~N~l~~~~p~ 652 (844)
.+++|+.|+|++|+++ .+|.
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCS
T ss_pred hcCCCCEEECCCCccC-hhhh
Confidence 5666666666666665 4443
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=9.8e-26 Score=259.10 Aligned_cols=268 Identities=25% Similarity=0.307 Sum_probs=133.9
Q ss_pred CccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecC
Q 038149 395 ELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFL 474 (844)
Q Consensus 395 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 474 (844)
.++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++.. |. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence 4666666666666 4555443 56666666666664 4443 345555555555555432 21 3344444444
Q ss_pred CCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCccc
Q 038149 475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGP 554 (844)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 554 (844)
++|.+++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++|.+.+.
T Consensus 109 s~N~l~~-------------------------l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 109 FSNPLTH-------------------------LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL 156 (622)
T ss_dssp CSCCCCC-------------------------CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred cCCcCCC-------------------------CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc
Confidence 4444442 222 23444444444444432 2221 24444444444444321
Q ss_pred CCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCC
Q 038149 555 LEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLR 634 (844)
Q Consensus 555 ~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 634 (844)
|. .+.+|+.|++++|.+++ +| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|.. ++
T Consensus 157 -~~--~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~ 221 (622)
T 3g06_A 157 -PA--LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PS 221 (622)
T ss_dssp -CC--CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CT
T ss_pred -CC--ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CC
Confidence 11 12345555555555542 33 234556666666666553 2321 345666666666655 33332 24
Q ss_pred CCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEee
Q 038149 635 KLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLS 714 (844)
Q Consensus 635 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 714 (844)
+|+.|++++|++++ +|.. +++|+.|+|+
T Consensus 222 ~L~~L~Ls~N~L~~-lp~~---------------------------------------------------l~~L~~L~Ls 249 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LPVL---------------------------------------------------PSELKELMVS 249 (622)
T ss_dssp TCCEEECCSSCCSC-CCCC---------------------------------------------------CTTCCEEECC
T ss_pred CCCEEEccCCccCc-CCCC---------------------------------------------------CCcCcEEECC
Confidence 55666666665553 2210 2345556666
Q ss_pred cCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCC
Q 038149 715 SNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS 778 (844)
Q Consensus 715 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 778 (844)
+|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|.+++.+|..+..++
T Consensus 250 ~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 250 GNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 66665 4444 3455666666666665 5555566666666666666666655555554443
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-27 Score=267.06 Aligned_cols=235 Identities=22% Similarity=0.206 Sum_probs=171.1
Q ss_pred CCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECC
Q 038149 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPH 570 (844)
Q Consensus 491 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~ 570 (844)
++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+..+ .++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 356666666666666555666666666666666666665444 6666666666666666654332 2567777777
Q ss_pred CCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEcCCCccccC
Q 038149 571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLC-HLRKLAIVDISYNTLNGP 649 (844)
Q Consensus 571 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ 649 (844)
+|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|+|++|++++.+|..+. .+++|+.|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 7777755543 346788888888888877777788888888888888888877777775 678888888888888754
Q ss_pred CCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhc
Q 038149 650 IPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYL 729 (844)
Q Consensus 650 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 729 (844)
.+.. .+++|+.|+|++|++++ +|..++.+
T Consensus 185 ~~~~--------------------------------------------------~l~~L~~L~Ls~N~l~~-~~~~~~~l 213 (487)
T 3oja_A 185 KGQV--------------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSA 213 (487)
T ss_dssp ECCC--------------------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred cccc--------------------------------------------------cCCCCCEEECCCCCCCC-CCHhHcCC
Confidence 2111 14578888888888885 45558888
Q ss_pred cccCeEeccCcccccccCcccccccCCCEEeCCCCccc-ccCCccccCCCCCCEEEcc
Q 038149 730 GEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN-GQIPPELGELSFLAIFNVS 786 (844)
Q Consensus 730 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls 786 (844)
++|+.|+|++|.|++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888888888888884 7778888888888888888887 7777888888888888776
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.2e-25 Score=249.30 Aligned_cols=247 Identities=18% Similarity=0.135 Sum_probs=171.4
Q ss_pred cEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCC
Q 038149 397 VYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLND 476 (844)
Q Consensus 397 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 476 (844)
..++.++..++ .+|..+. ++++.|+|++|++.+ ++...+..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 44555555554 3444333 455556666665542 3333345556666666666666555555566666666666666
Q ss_pred CcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCc-ccccCCccccCCCCCCEEecCCCcCcccC
Q 038149 477 NQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS-FEGDVSVQLSNLEVARILDISENKLYGPL 555 (844)
Q Consensus 477 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 555 (844)
|+++...+..|..+++|++|++++|++++..+..|..+++|++|++++|. +....+..|.++++|++|++++|.+. .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 66665555556666666666666666665555566666777777776643 33333345667777777777777775 34
Q ss_pred CCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCC
Q 038149 556 EFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRK 635 (844)
Q Consensus 556 ~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 635 (844)
|....+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++
T Consensus 201 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 44447788888888888888888889999999999999999999888888999999999999999999777778889999
Q ss_pred CCEEEcCCCcccc
Q 038149 636 LAIVDISYNTLNG 648 (844)
Q Consensus 636 L~~L~Ls~N~l~~ 648 (844)
|+.|+|++|++..
T Consensus 281 L~~L~L~~Np~~C 293 (440)
T 3zyj_A 281 LERIHLHHNPWNC 293 (440)
T ss_dssp CCEEECCSSCEEC
T ss_pred CCEEEcCCCCccC
Confidence 9999999998864
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.2e-25 Score=250.18 Aligned_cols=249 Identities=18% Similarity=0.117 Sum_probs=185.0
Q ss_pred ccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCC
Q 038149 396 LVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLN 475 (844)
Q Consensus 396 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 475 (844)
...++.++..++ .+|..+. +++++|++++|.+++ ++...+..+++|++|++++|++++..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 345555555555 3454333 456666666666653 333334566666666666666666666666677777777777
Q ss_pred CCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCc-ccccCCccccCCCCCCEEecCCCcCccc
Q 038149 476 DNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNS-FEGDVSVQLSNLEVARILDISENKLYGP 554 (844)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 554 (844)
+|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|. +....+..+.++++|++|++++|.+.+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 777776555666777777777777777776656667777777777777744 3333344577778888888888887653
Q ss_pred CCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCC
Q 038149 555 LEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLR 634 (844)
Q Consensus 555 ~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 634 (844)
|....+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|++|+|++|++++..+..+..++
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 4445788899999999999988899999999999999999999998899999999999999999999987778889999
Q ss_pred CCCEEEcCCCccccC
Q 038149 635 KLAIVDISYNTLNGP 649 (844)
Q Consensus 635 ~L~~L~Ls~N~l~~~ 649 (844)
+|+.|+|++|++...
T Consensus 291 ~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 291 YLVELHLHHNPWNCD 305 (452)
T ss_dssp TCCEEECCSSCEECS
T ss_pred CCCEEEccCCCcCCC
Confidence 999999999998743
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4.5e-25 Score=253.58 Aligned_cols=263 Identities=25% Similarity=0.230 Sum_probs=208.0
Q ss_pred CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149 444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS 523 (844)
Q Consensus 444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls 523 (844)
+++.|++++|.++ .+|..+. ++|+.|++++|.++. +|. .+++|++|++++|+++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4555555555555 2333332 567777777777663 343 4688999999999988 4555 67899999999
Q ss_pred CCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccc
Q 038149 524 RNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA 603 (844)
Q Consensus 524 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 603 (844)
+|.+++. |. .+++|+.|++++|++.+. |. .+++|++|++++|++++ +|. ...+|+.|++++|++++ +|
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~l-p~--~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV--LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCcC-CC--CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc
Confidence 9999864 43 578899999999999863 33 35899999999999985 454 34689999999999995 55
Q ss_pred hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccccc
Q 038149 604 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRES 683 (844)
Q Consensus 604 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (844)
..+++|++|++++|++++ +|.. +++|+.|++++|.++ .+|..
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~------------------------------ 219 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL------------------------------ 219 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC------------------------------
T ss_pred ---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC------------------------------
Confidence 457899999999999985 5543 478999999999987 33321
Q ss_pred ccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCC
Q 038149 684 SQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSY 763 (844)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~ 763 (844)
+++|+.|+|++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++
T Consensus 220 ---------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 220 ---------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp ---------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred ---------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence 3478999999999995 77 45689999999999999 5776 678999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcccccCCCC
Q 038149 764 NKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK 797 (844)
Q Consensus 764 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 797 (844)
|+|+ .+|..+..+++|+.|++++|+++|.+|..
T Consensus 271 N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp SCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 9999 88999999999999999999999988763
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-26 Score=260.40 Aligned_cols=245 Identities=19% Similarity=0.171 Sum_probs=205.7
Q ss_pred CCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEEC
Q 038149 514 FSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDL 593 (844)
Q Consensus 514 l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 593 (844)
+++|+.|++++|.+++..|..|..+++|++|++++|.+.+..+ ...+++|++|++++|.+++..+ .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 3489999999999999888999999999999999999988776 4489999999999999985432 389999999
Q ss_pred CCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCccccccccc
Q 038149 594 RDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSL 673 (844)
Q Consensus 594 s~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~ 673 (844)
++|.+++..+. .+++|++|+|++|++++..|..++.+++|+.|+|++|.+++.+|..+..
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----------------- 166 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----------------- 166 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-----------------
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-----------------
Confidence 99999987664 4688999999999999999999999999999999999999888877652
Q ss_pred CCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccc
Q 038149 674 ALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNL 753 (844)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 753 (844)
.+++|++|+|++|.+++. |. +..+++|++|+|++|.+++. |..++.+
T Consensus 167 ------------------------------~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 213 (487)
T 3oja_A 167 ------------------------------SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSA 213 (487)
T ss_dssp ------------------------------GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGG
T ss_pred ------------------------------hCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCC-CHhHcCC
Confidence 156899999999999965 33 44699999999999999964 5559999
Q ss_pred cCCCEEeCCCCcccccCCccccCCCCCCEEEccCCccc-ccCCCC-CcCCCcCccccC-------CCCCCcCcc
Q 038149 754 KMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLS-GTVPNK-GQFANFDESNYR-------GNPYLCGPA 818 (844)
Q Consensus 754 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~ip~~-~~~~~~~~~~~~-------gn~~lc~~~ 818 (844)
++|+.|||++|.+++ +|..+..+++|+.|++++|++. +.+|.. +.+..+...... +|+..|.++
T Consensus 214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 999999999999995 7888999999999999999998 555532 223233333332 677777654
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=5.1e-28 Score=282.44 Aligned_cols=373 Identities=16% Similarity=0.101 Sum_probs=201.0
Q ss_pred CCCCCEEEccCC-cccccCChhhhcCCCCccEEEccCCcCCCCCCcccc----ccccCcEEeccCCc--CCCCCChhhhh
Q 038149 368 KRNLPHLVISNN-SFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMG----YMERLLFLDLSSNN--FSRDLPKHFLT 440 (844)
Q Consensus 368 ~~~L~~L~l~~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~--l~~~~~~~~~~ 440 (844)
+++|++|++++| .+.......+...+++|++|++++|.+++..+..+. .+++|++|++++|. +.......+..
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 445555555555 222221122222356666666666665544333332 44466666666664 11111112223
Q ss_pred cCCCCcEEeCcCc-ccCCcCCccccCCCCcCEecCCCCc-------CcccccccccCCCCCcEE-EccCcccCcCCChhh
Q 038149 441 SCVSLEFMNLSHN-YFDGQIFPKYMNLAKLVFLFLNDNQ-------FTGRLEVGLLNASSLYVL-DVSNNMLSGQLPRWI 511 (844)
Q Consensus 441 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L-~ls~n~l~~~~p~~l 511 (844)
.+++|++|++++| .+.+ ++..+..+++|++|++..+. +.+ ++..+.++++|+.| .+.+... +.++..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~ 285 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVY 285 (594)
T ss_dssp HCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGH
T ss_pred hCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHH
Confidence 4566666666665 2222 44445556666666644332 222 23345666666666 3333222 2344444
Q ss_pred hcCCCCCEEeCCCCcccccC-CccccCCCCCCEEecCCCcCcc-cCCCCC-CCCCCcEEECC---------CCccccccC
Q 038149 512 GKFSNLDVLLMSRNSFEGDV-SVQLSNLEVARILDISENKLYG-PLEFSS-NHSSLRYLFPH---------NNSLSGTIP 579 (844)
Q Consensus 512 ~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~-~~~~~~-~~~~L~~L~l~---------~n~l~~~~p 579 (844)
..+++|++|++++|.+++.. ...+..+++|++|++++| +.. .++... .+++|+.|++. .+.+++...
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 55666777777766654332 222445666677766666 221 111111 35666666662 234443333
Q ss_pred cccc-CCCCCCEEECCCCcCCcccchhhh-CCCCCCEEEcc--C----Ccccc-----cCCcccCCCCCCCEEEcCCCcc
Q 038149 580 NALL-QSSQLTTLDLRDNEFSGNIAHLIN-EDSNLRALLLR--G----NNLQG-----NIPEPLCHLRKLAIVDISYNTL 646 (844)
Q Consensus 580 ~~l~-~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~L~--~----N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l 646 (844)
..+. .+++|++|+++.|.+++..+..+. .+++|++|+++ + +.+++ .++..+..+++|+.|++++ .+
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 3333 367777777777777765555554 47778888777 3 44441 1122245667777777765 44
Q ss_pred ccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchh
Q 038149 647 NGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI 726 (844)
Q Consensus 647 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 726 (844)
++..+..++. .+++|+.|+|++|.+++..+..+
T Consensus 444 ~~~~~~~l~~-----------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l 476 (594)
T 2p1m_B 444 TDKVFEYIGT-----------------------------------------------YAKKMEMLSVAFAGDSDLGMHHV 476 (594)
T ss_dssp CHHHHHHHHH-----------------------------------------------HCTTCCEEEEESCCSSHHHHHHH
T ss_pred cHHHHHHHHH-----------------------------------------------hchhccEeeccCCCCcHHHHHHH
Confidence 4332222221 14567888888888876555555
Q ss_pred -hhccccCeEeccCcccccccCc-ccccccCCCEEeCCCCcccccCCccc-cCCCCCCEEEccCCcccc
Q 038149 727 -GYLGEIHALNLSNNFLSGSIPR-SFSNLKMTESMDLSYNKLNGQIPPEL-GELSFLAIFNVSYNNLSG 792 (844)
Q Consensus 727 -~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~ls~N~l~g 792 (844)
..+++|++|+|++|.+++..+. .+..+++|+.|++++|+++......+ ..++.|+...+..+.-..
T Consensus 477 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence 5678888888888888655444 34457888888888888765444444 456777666666554433
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.2e-27 Score=275.73 Aligned_cols=378 Identities=15% Similarity=0.054 Sum_probs=256.6
Q ss_pred CCCCCCEEEccCCcccccCChhhhcCCCCccEEEccCC-cCCCC-CCccccccccCcEEeccCCcCCCCCChh---hhhc
Q 038149 367 SKRNLPHLVISNNSFIGKLPENFGLILPELVYLDMSQN-SFEGS-IPPSMGYMERLLFLDLSSNNFSRDLPKH---FLTS 441 (844)
Q Consensus 367 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~~ 441 (844)
.+++|++|++++|.+.+..+..+...+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+.. +...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 45678888888887776666666544789999999888 45432 3444457888999999998876543322 2235
Q ss_pred CCCCcEEeCcCcc--cCCc-CCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCc-------ccCcCCChhh
Q 038149 442 CVSLEFMNLSHNY--FDGQ-IFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNN-------MLSGQLPRWI 511 (844)
Q Consensus 442 l~~L~~L~Ls~n~--l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n-------~l~~~~p~~l 511 (844)
+++|++|++++|. ++.. +......+++|++|++++|...+.++..+..+++|++|+++.+ .+.+ ++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH
Confidence 6789999998886 2211 1111245688899999888333336777777888888885544 3343 34467
Q ss_pred hcCCCCCEE-eCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCC--CCCCCCcEEECCCCccccc-cCccccCCCC
Q 038149 512 GKFSNLDVL-LMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFS--SNHSSLRYLFPHNNSLSGT-IPNALLQSSQ 587 (844)
Q Consensus 512 ~~l~~L~~L-~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~--~~~~~L~~L~l~~n~l~~~-~p~~l~~l~~ 587 (844)
.++++|+.| .+.+... +.++..+..+++|++|++++|.+.+..... ..+++|+.|++++| ++.. ++.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 888888888 4443322 344555556788999999988865432221 16788899988888 4322 2333345788
Q ss_pred CCEEEC---------CCCcCCcccchhh-hCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEcC--C----CccccCC
Q 038149 588 LTTLDL---------RDNEFSGNIAHLI-NEDSNLRALLLRGNNLQGNIPEPLC-HLRKLAIVDIS--Y----NTLNGPI 650 (844)
Q Consensus 588 L~~L~L---------s~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~ 650 (844)
|++|++ +.+.+++.....+ ..+++|++|.++.|++++..+..+. .+++|+.|+++ + +.+++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 888888 3345554433333 3478888888888888766555554 47888888888 3 3443211
Q ss_pred Cc-hhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhh-
Q 038149 651 PS-CFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGY- 728 (844)
Q Consensus 651 p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~- 728 (844)
.. .+..+ ...+++|+.|+|++ .+++..+..++.
T Consensus 420 ~~~~~~~l--------------------------------------------~~~~~~L~~L~L~~-~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 420 LDIGFGAI--------------------------------------------VEHCKDLRRLSLSG-LLTDKVFEYIGTY 454 (594)
T ss_dssp THHHHHHH--------------------------------------------HHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred hhhHHHHH--------------------------------------------HhhCCCccEEeecC-cccHHHHHHHHHh
Confidence 11 11100 01256899999987 777766667766
Q ss_pred ccccCeEeccCcccccccCccc-ccccCCCEEeCCCCcccccCCc-cccCCCCCCEEEccCCcccc
Q 038149 729 LGEIHALNLSNNFLSGSIPRSF-SNLKMTESMDLSYNKLNGQIPP-ELGELSFLAIFNVSYNNLSG 792 (844)
Q Consensus 729 l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~ls~N~l~g 792 (844)
+++|++|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. ....+++|++|++++|+++.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 8999999999999987766666 7799999999999999766554 44568999999999999853
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.2e-24 Score=222.34 Aligned_cols=227 Identities=22% Similarity=0.220 Sum_probs=164.6
Q ss_pred EEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccc
Q 038149 496 LDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLS 575 (844)
Q Consensus 496 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 575 (844)
.+..+..++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++| +++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-----------------------~l~ 65 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----------------------EIQ 65 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-----------------------CCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-----------------------cCC
Confidence 444444454 3444332 35666666666665555445555555555555555 444
Q ss_pred cccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccC-CCchh
Q 038149 576 GTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGP-IPSCF 654 (844)
Q Consensus 576 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~ 654 (844)
+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++++. +|..+
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~ 145 (276)
T 2z62_A 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh
Confidence 44555677777888888888888777777778888888888888888866666788888888888888888763 56666
Q ss_pred hccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccC-
Q 038149 655 TNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIH- 733 (844)
Q Consensus 655 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~- 733 (844)
++ +++|++|+|++|++++..+..+..++.|+
T Consensus 146 ~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 146 SN------------------------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp GG------------------------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred cc------------------------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 55 45778888888888877777788777777
Q ss_pred ---eEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC
Q 038149 734 ---ALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK 797 (844)
Q Consensus 734 ---~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 797 (844)
.|++++|.+++..+..+. ..+|+.|+|++|++++..+..+..+++|+.|++++|++++..|..
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 889999999865555444 458999999999999776677889999999999999999888754
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=8.2e-24 Score=219.88 Aligned_cols=216 Identities=22% Similarity=0.302 Sum_probs=167.2
Q ss_pred CCCCCCCceEecCCCCceEEEeeCcCcccCCCCCCCCCcccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCC
Q 038149 48 SDCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQL 127 (844)
Q Consensus 48 ~~~C~w~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L 127 (844)
.++|.|.|+.|.- .+.++.+++++..+. .+ + ..+ .+++++|++++|.+.++.+ ..+.++++|
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~---~i-------p-~~~--~~~l~~L~l~~n~l~~~~~----~~~~~l~~L 63 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT---AI-------P-SNI--PADTKKLDLQSNKLSSLPS----KAFHRLTKL 63 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS---SC-------C-SCC--CTTCSEEECCSSCCSCCCT----TSSSSCTTC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC---cc-------C-CCC--CCCCCEEECcCCCCCeeCH----HHhcCCCCC
Confidence 4799999999974 345677888887761 11 1 111 2578999999999888766 567888999
Q ss_pred CEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEc
Q 038149 128 KILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNI 207 (844)
Q Consensus 128 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 207 (844)
++|++++|.++...+..|.++++|++|++++|.++. ++...+.++++|++|++++|+++ .+++..|..+++|++|++
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA--LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSL 140 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC--CCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc--CCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEEC
Confidence 999999999988777778889999999999998854 55567788889999999998887 556666888889999999
Q ss_pred cCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccc
Q 038149 208 NENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQV 286 (844)
Q Consensus 208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i 286 (844)
++|.+++..+..|..+++|++|++++|.++ .++...|.++++|++|++++|.+++ ++...+..+++|+.|++++|.+
T Consensus 141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCe
Confidence 999888777677888888999999888888 4554678888888888888888874 4444566666666666655543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.4e-23 Score=219.17 Aligned_cols=229 Identities=21% Similarity=0.162 Sum_probs=168.6
Q ss_pred EecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCc
Q 038149 471 FLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENK 550 (844)
Q Consensus 471 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~ 550 (844)
.++..+..+. .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4455555555 456554 3689999999999998877789999999999999999998777778888888888877776
Q ss_pred CcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc-CCcc
Q 038149 551 LYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN-IPEP 629 (844)
Q Consensus 551 l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~ 629 (844)
+.+ ..+..+..+++|++|++++|++.+..+..++.+++|++|++++|++++. +|..
T Consensus 88 l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 88 IQS-----------------------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp CCE-----------------------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred cCc-----------------------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 654 3344556666667777777766665555666777777777777777653 5777
Q ss_pred cCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccce
Q 038149 630 LCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMT 709 (844)
Q Consensus 630 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 709 (844)
+..+++|+.|++++|++++..+..+..+.. ++.+.
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---------------------------------------------L~~l~ 179 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ---------------------------------------------MPLLN 179 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHT---------------------------------------------CTTCC
T ss_pred hccCCCCCEEECCCCCCCcCCHHHhhhhhh---------------------------------------------ccccc
Confidence 777888888888888887666665554321 12222
Q ss_pred -EEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCC
Q 038149 710 -GLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP 771 (844)
Q Consensus 710 -~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 771 (844)
+|++++|++++..+..+ ...+|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|
T Consensus 180 l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 180 LSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 68889998885444444 44589999999999997666677889999999999999986543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=8.4e-23 Score=212.22 Aligned_cols=206 Identities=25% Similarity=0.244 Sum_probs=162.8
Q ss_pred CCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCC
Q 038149 541 ARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN 620 (844)
Q Consensus 541 L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 620 (844)
.+.++++++.+.. +|... .+.++.|++++|++++..+..|..+++|++|++++|+++...+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4455555555543 22221 245777777777777666667888888888888888888666666788888999999998
Q ss_pred cccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccc
Q 038149 621 NLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESY 700 (844)
Q Consensus 621 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (844)
++++..+..+..+++|+.|++++|++++..|..|..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------- 131 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-------------------------------------------- 131 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT--------------------------------------------
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc--------------------------------------------
Confidence 888766677888899999999999888766666554
Q ss_pred cccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCC
Q 038149 701 KGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFL 780 (844)
Q Consensus 701 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 780 (844)
+++|++|+|++|++++..+..++.+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|
T Consensus 132 ----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 132 ----LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp ----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ----CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 4578899999999986666668899999999999999997777788999999999999999997767778899999
Q ss_pred CEEEccCCcccccCCC
Q 038149 781 AIFNVSYNNLSGTVPN 796 (844)
Q Consensus 781 ~~L~ls~N~l~g~ip~ 796 (844)
+.|++++|++.+..+.
T Consensus 208 ~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 208 KMLQLQENPWDCTCNG 223 (270)
T ss_dssp CEEECCSSCBCCSSSS
T ss_pred CEEEecCCCeeCCCcc
Confidence 9999999999876653
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.1e-23 Score=218.94 Aligned_cols=162 Identities=25% Similarity=0.248 Sum_probs=120.6
Q ss_pred cccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccc
Q 038149 581 ALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLW 660 (844)
Q Consensus 581 ~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~ 660 (844)
.+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---- 155 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK---- 155 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc----
Confidence 4555666666666666666555556666677777777777776666666677777777777777777555544443
Q ss_pred cccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCc
Q 038149 661 MEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNN 740 (844)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 740 (844)
+++|++|++++|++++..|..++.+++|++|++++|
T Consensus 156 --------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 156 --------------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 456778888888888766667788888899999999
Q ss_pred ccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC
Q 038149 741 FLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK 797 (844)
Q Consensus 741 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 797 (844)
++++..|..++.+++|+.|++++|.+.+.. +.|+.++++.|+++|.+|..
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence 998877777888999999999999887654 46888899999999999875
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.7e-23 Score=217.56 Aligned_cols=227 Identities=19% Similarity=0.180 Sum_probs=131.7
Q ss_pred cCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCC
Q 038149 469 LVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISE 548 (844)
Q Consensus 469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~ 548 (844)
+..+.+.++.+.... ....+++|+.|++++|.++. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 334444444444322 23345566666666666552 22 355566666666666665532 2344444454444444
Q ss_pred CcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCc
Q 038149 549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPE 628 (844)
Q Consensus 549 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~ 628 (844)
|.+ ++..+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+.
T Consensus 95 n~l-----------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 95 NQL-----------------------QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp SCC-----------------------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred Ccc-----------------------CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 444 333344455555666666666666655555556666666666666666655555
Q ss_pred ccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccc
Q 038149 629 PLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYM 708 (844)
Q Consensus 629 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 708 (844)
.+..+++|+.|++++|++++..|..++. +++|
T Consensus 152 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------------l~~L 183 (272)
T 3rfs_A 152 VFDKLTNLTELDLSYNQLQSLPEGVFDK------------------------------------------------LTQL 183 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------------------CTTC
T ss_pred HhccCccCCEEECCCCCcCccCHHHhcC------------------------------------------------CccC
Confidence 5566666666666666666544444433 3456
Q ss_pred eEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCC
Q 038149 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSF 779 (844)
Q Consensus 709 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 779 (844)
++|++++|++++..|..++.+++|++|++++|.+.+.. ++|+.|+++.|+++|.+|..++.+..
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCcccccCC
Confidence 66777777777666666677777777777777766443 35677777777777777777666543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1e-22 Score=213.33 Aligned_cols=206 Identities=21% Similarity=0.180 Sum_probs=180.2
Q ss_pred ccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCE
Q 038149 535 LSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRA 614 (844)
Q Consensus 535 l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 614 (844)
+..+++++.++++++.+... |... .+.++.|++++|.+++..+..+..+++|++|++++|.+++..+. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcC-CCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 66788999999999999754 3332 37899999999999988889999999999999999999965443 78999999
Q ss_pred EEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeec
Q 038149 615 LLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAK 694 (844)
Q Consensus 615 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (844)
|++++|+++ .+|..+..+++|+.|++++|++++..|..|.+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------- 122 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence 999999998 78888999999999999999999776677765
Q ss_pred cccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccc
Q 038149 695 NRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPEL 774 (844)
Q Consensus 695 ~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 774 (844)
+++|++|+|++|++++..+..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..+
T Consensus 123 ----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 123 ----------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp ----------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred ----------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 457899999999999777777899999999999999999666667789999999999999999 789999
Q ss_pred cCCCCCCEEEccCCcccccC
Q 038149 775 GELSFLAIFNVSYNNLSGTV 794 (844)
Q Consensus 775 ~~l~~L~~L~ls~N~l~g~i 794 (844)
..+..|+.+++++|++.+..
T Consensus 192 ~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTCCCSEEECCSCCBCCSG
T ss_pred cccccCCeEEeCCCCccCcC
Confidence 99999999999999997643
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.6e-22 Score=211.97 Aligned_cols=203 Identities=22% Similarity=0.162 Sum_probs=172.6
Q ss_pred hhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCC
Q 038149 511 IGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLT 589 (844)
Q Consensus 511 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 589 (844)
+..+++++++++++|.++ .+|..+. +.+++|++++|.+.+..+..+ .+++|+.|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 567889999999999998 4555443 689999999999987766655 889999999999999865433 7889999
Q ss_pred EEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCccccc
Q 038149 590 TLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNS 669 (844)
Q Consensus 590 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~ 669 (844)
+|++++|+++ .+|..+..+++|++|++++|++++..|..|..+++|+.|+|++|++++..+..|..
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------- 146 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP------------- 146 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-------------
Confidence 9999999998 67888889999999999999999777788999999999999999998666555544
Q ss_pred ccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcc
Q 038149 670 TLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRS 749 (844)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 749 (844)
+++|+.|+|++|++++..+..+..+++|+.|+|++|+|+ .+|..
T Consensus 147 -----------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~ 190 (290)
T 1p9a_G 147 -----------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190 (290)
T ss_dssp -----------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred -----------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh
Confidence 457899999999999655566788999999999999999 78888
Q ss_pred cccccCCCEEeCCCCcccc
Q 038149 750 FSNLKMTESMDLSYNKLNG 768 (844)
Q Consensus 750 l~~l~~L~~L~Ls~N~l~~ 768 (844)
+..+.+|+.|+|++|.+..
T Consensus 191 ~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 191 FFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTCCCSEEECCSCCBCC
T ss_pred hcccccCCeEEeCCCCccC
Confidence 9899999999999999864
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4.2e-24 Score=232.17 Aligned_cols=182 Identities=20% Similarity=0.159 Sum_probs=80.7
Q ss_pred EeCcCcccCCcCCccccCCCCcCEecCCCCcCccccc----ccccCCC-CCcEEEccCcccCcCCChhhhcC-----CCC
Q 038149 448 MNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLE----VGLLNAS-SLYVLDVSNNMLSGQLPRWIGKF-----SNL 517 (844)
Q Consensus 448 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~ls~n~l~~~~p~~l~~l-----~~L 517 (844)
+.+++|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3445555554444443334445555555555544333 3344444 45555555555544444444332 445
Q ss_pred CEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCC-CCCcEEECCCCccccccCcccc----C-CCCCCEE
Q 038149 518 DVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNH-SSLRYLFPHNNSLSGTIPNALL----Q-SSQLTTL 591 (844)
Q Consensus 518 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~l~----~-l~~L~~L 591 (844)
++|++++|.+++..+..+... .... ++|++|++++|++++..+..+. . .++|++|
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~-------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 143 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKT-------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHH-------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred cEEECcCCcCChHHHHHHHHH-------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence 555555554443333322111 0011 3444444444444433332222 2 2355555
Q ss_pred ECCCCcCCccc----chhhhCCC-CCCEEEccCCcccccCCccc----CCC-CCCCEEEcCCCcccc
Q 038149 592 DLRDNEFSGNI----AHLINEDS-NLRALLLRGNNLQGNIPEPL----CHL-RKLAIVDISYNTLNG 648 (844)
Q Consensus 592 ~Ls~N~l~~~~----~~~l~~l~-~L~~L~L~~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~ 648 (844)
++++|++++.. +..+..++ +|++|+|++|++++..+..+ ..+ ++|+.|||++|.+++
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 55555555322 22333333 55555555555554443322 222 355666666665553
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.6e-24 Score=238.06 Aligned_cols=241 Identities=19% Similarity=0.239 Sum_probs=155.3
Q ss_pred cccccCCCCCcEEEccCcccCcCCCh----hhhcCCCCCEEeCCCCc---ccccCCccc-------cCCCCCCEEecCCC
Q 038149 484 EVGLLNASSLYVLDVSNNMLSGQLPR----WIGKFSNLDVLLMSRNS---FEGDVSVQL-------SNLEVARILDISEN 549 (844)
Q Consensus 484 ~~~~~~l~~L~~L~ls~n~l~~~~p~----~l~~l~~L~~L~ls~n~---l~~~~~~~l-------~~l~~L~~L~ls~n 549 (844)
+..+..+++|++|++++|.+++..+. .+..+++|++|++++|. +.+.+|..+ ..+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~----------- 93 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC----------- 93 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-----------
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-----------
Confidence 33444555666666666665543222 24455556666665542 233333332 344
Q ss_pred cCcccCCCCCCCCCCcEEECCCCcccc----ccCccccCCCCCCEEECCCCcCCcccchhhh----CC---------CCC
Q 038149 550 KLYGPLEFSSNHSSLRYLFPHNNSLSG----TIPNALLQSSQLTTLDLRDNEFSGNIAHLIN----ED---------SNL 612 (844)
Q Consensus 550 ~l~~~~~~~~~~~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~----~l---------~~L 612 (844)
++|++|++++|.+++ .+|..+..+++|++|+|++|.++...+..+. .+ ++|
T Consensus 94 ------------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 94 ------------PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp ------------TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred ------------CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence 455555555555554 3566677777777777777777644333333 33 778
Q ss_pred CEEEccCCccc-ccCC---cccCCCCCCCEEEcCCCcccc-----CCCchhhccccccccCcccccccccCCCccccccc
Q 038149 613 RALLLRGNNLQ-GNIP---EPLCHLRKLAIVDISYNTLNG-----PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRES 683 (844)
Q Consensus 613 ~~L~L~~N~l~-~~~p---~~l~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (844)
++|+|++|+++ +.+| ..+..+++|+.|++++|+++. .+|..+..
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~--------------------------- 214 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY--------------------------- 214 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG---------------------------
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc---------------------------
Confidence 88888888776 3344 356667788888888887752 11212222
Q ss_pred ccceeeeeeeccccccccccccccceEEEeecCccc----CCCCchhhhccccCeEeccCcccccc----cCcccc--cc
Q 038149 684 SQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELT----GDIPSEIGYLGEIHALNLSNNFLSGS----IPRSFS--NL 753 (844)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~--~l 753 (844)
+++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. +|..+. .+
T Consensus 215 ---------------------~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 273 (386)
T 2ca6_A 215 ---------------------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273 (386)
T ss_dssp ---------------------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred ---------------------CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence 457788888888885 56777888888888888888888866 566663 38
Q ss_pred cCCCEEeCCCCcccc----cCCccc-cCCCCCCEEEccCCcccccCC
Q 038149 754 KMTESMDLSYNKLNG----QIPPEL-GELSFLAIFNVSYNNLSGTVP 795 (844)
Q Consensus 754 ~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~ls~N~l~g~ip 795 (844)
++|+.|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888888888888887 477777 568888888888888887664
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4.9e-24 Score=231.69 Aligned_cols=260 Identities=20% Similarity=0.173 Sum_probs=180.9
Q ss_pred ecCCCCcCcccccccccCCCCCcEEEccCcccCcCCC----hhhhcCC-CCCEEeCCCCcccccCCccccCCCCCCEEec
Q 038149 472 LFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLP----RWIGKFS-NLDVLLMSRNSFEGDVSVQLSNLEVARILDI 546 (844)
Q Consensus 472 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p----~~l~~l~-~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 546 (844)
+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 4556666666666555555556666666666665444 4555555 56666666666555444433332
Q ss_pred CCCcCcccCCCCCC-CCCCcEEECCCCccccccCcc----ccCC-CCCCEEECCCCcCCcccchhhhC-----CCCCCEE
Q 038149 547 SENKLYGPLEFSSN-HSSLRYLFPHNNSLSGTIPNA----LLQS-SQLTTLDLRDNEFSGNIAHLINE-----DSNLRAL 615 (844)
Q Consensus 547 s~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~p~~----l~~l-~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L 615 (844)
... .++|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+.. .++|++|
T Consensus 75 -----------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 143 (362)
T 3goz_A 75 -----------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143 (362)
T ss_dssp -----------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred -----------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence 001 145566666666666555553 4444 89999999999999877765543 3699999
Q ss_pred EccCCcccccC----CcccCCCC-CCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeee
Q 038149 616 LLRGNNLQGNI----PEPLCHLR-KLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVK 690 (844)
Q Consensus 616 ~L~~N~l~~~~----p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (844)
+|++|++++.. +..+..++ +|+.|+|++|++++..+..+...-
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-------------------------------- 191 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL-------------------------------- 191 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------
Confidence 99999998543 44455565 999999999999987776665420
Q ss_pred eeecccccccccccc-ccceEEEeecCcccCC----CCchhhhc-cccCeEeccCcccccccC----cccccccCCCEEe
Q 038149 691 FMAKNRYESYKGDVL-KYMTGLDLSSNELTGD----IPSEIGYL-GEIHALNLSNNFLSGSIP----RSFSNLKMTESMD 760 (844)
Q Consensus 691 ~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~g~----ip~~l~~l-~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~L~ 760 (844)
... ++|++|||++|++++. ++..+..+ ++|++|+|++|.+++..+ ..+..+++|+.|+
T Consensus 192 ------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 192 ------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp ------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred ------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 002 3789999999999963 56666664 599999999999997554 3457789999999
Q ss_pred CCCCccccc-------CCccccCCCCCCEEEccCCcccccC
Q 038149 761 LSYNKLNGQ-------IPPELGELSFLAIFNVSYNNLSGTV 794 (844)
Q Consensus 761 Ls~N~l~~~-------ip~~l~~l~~L~~L~ls~N~l~g~i 794 (844)
|++|.+.+. ++..+..+++|+.||+++|++.+..
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 999995533 3446788899999999999998763
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=3.4e-22 Score=205.22 Aligned_cols=212 Identities=19% Similarity=0.185 Sum_probs=158.3
Q ss_pred CCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcC
Q 038149 563 SLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDIS 642 (844)
Q Consensus 563 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 642 (844)
..+.++++++.++ .+|..+. +.++.|++++|++++..+..+..+++|++|+|++|++++..|..+..+++|+.|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456666666666 5565554 578888888888888777788888888888888888888777788888899999999
Q ss_pred CCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCC
Q 038149 643 YNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI 722 (844)
Q Consensus 643 ~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i 722 (844)
+|++++..|..|.. +++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~------------------------------------------------l~~L~~L~L~~N~l~~~~ 123 (251)
T 3m19_A 92 NNQLASLPLGVFDH------------------------------------------------LTQLDKLYLGGNQLKSLP 123 (251)
T ss_dssp TSCCCCCCTTTTTT------------------------------------------------CTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhHhcc------------------------------------------------cCCCCEEEcCCCcCCCcC
Confidence 99888666555544 457888999999999666
Q ss_pred CchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCC
Q 038149 723 PSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFAN 802 (844)
Q Consensus 723 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~ 802 (844)
+..+..+++|++|+|++|+|++..|..|+.+++|+.|+|++|++++..|..+..+++|++|++++|++++..+....+..
T Consensus 124 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~ 203 (251)
T 3m19_A 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQ 203 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHH
T ss_pred hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHH
Confidence 66778899999999999999977777899999999999999999988888899999999999999999887443311111
Q ss_pred ------cCccccCCCCCCcCccCCCCCCCC
Q 038149 803 ------FDESNYRGNPYLCGPAVRKNCSSE 826 (844)
Q Consensus 803 ------~~~~~~~gn~~lc~~~~~~~c~~~ 826 (844)
.......|+. +|+.+-...|...
T Consensus 204 ~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 204 WIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp HHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred HHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 1111233443 5655555567654
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=9.6e-22 Score=201.82 Aligned_cols=192 Identities=28% Similarity=0.372 Sum_probs=158.8
Q ss_pred CCCCCCceEecCCCCceEEEeeCcCcccCCCCCCCCCcccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCC
Q 038149 49 DCCTWERIKCNATTGRVMELSLDSAIQVDSDDVNDGFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLK 128 (844)
Q Consensus 49 ~~C~w~gv~c~~~~~~V~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~ 128 (844)
+||.|.|++|.. ..+.+++++..+. .+ + ..+ .+++++|+|++|.+.+..+ ..+.++++|+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~---~~-------p-~~~--~~~l~~L~L~~n~l~~~~~----~~~~~l~~L~ 62 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD---SV-------P-SGI--PADTEKLDLQSTGLATLSD----ATFRGLTKLT 62 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS---SC-------C-SCC--CTTCCEEECTTSCCCCCCT----TTTTTCTTCC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc---cc-------C-CCC--CCCCCEEEccCCCcCccCH----hHhcCcccCC
Confidence 699999999963 2345778777651 11 1 111 2589999999999998877 5788999999
Q ss_pred EEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEcc
Q 038149 129 ILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNIN 208 (844)
Q Consensus 129 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~ 208 (844)
+|+|++|.+++..+..|.++++|++|+|++|.++. ++...|..+++|++|+|++|+++ .++...+..+++|++|+|+
T Consensus 63 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcCCccCHhHhccCCcCCEEECCCCcccc--cChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECc
Confidence 99999999999888889999999999999999964 55567889999999999999998 6666678889999999999
Q ss_pred CCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCc
Q 038149 209 ENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQES 264 (844)
Q Consensus 209 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~ 264 (844)
+|.+++..+..|+++++|++|++++|+++ .++...+..+++|++|++++|.+.+.
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999877778999999999999999998 45547888999999999999988764
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5.9e-24 Score=233.50 Aligned_cols=246 Identities=16% Similarity=0.198 Sum_probs=174.2
Q ss_pred CCccccCCCCcCEecCCCCcCccccc----ccccCCCCCcEEEccCc---ccCcCCChhh-------hcCCCCCEEeCCC
Q 038149 459 IFPKYMNLAKLVFLFLNDNQFTGRLE----VGLLNASSLYVLDVSNN---MLSGQLPRWI-------GKFSNLDVLLMSR 524 (844)
Q Consensus 459 ~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~ls~n---~l~~~~p~~l-------~~l~~L~~L~ls~ 524 (844)
++..+..+++|++|++++|.++...+ ..+..+++|++|++++| ++++.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45667789999999999999987643 44778999999999996 4555666655 6899999999999
Q ss_pred Ccccc----cCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCC---------CCCCEE
Q 038149 525 NSFEG----DVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQS---------SQLTTL 591 (844)
Q Consensus 525 n~l~~----~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l---------~~L~~L 591 (844)
|.+.+ .++..+..+++|++|++++|.+....+. .++..+..+ ++|++|
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-------------------KIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-------------------HHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-------------------HHHHHHHHHhhhhhcccCCCCcEE
Confidence 99987 4666778888888888888877432221 112222222 667777
Q ss_pred ECCCCcCC-cccc---hhhhCCCCCCEEEccCCccc--c---cCCcccCCCCCCCEEEcCCCccc----cCCCchhhccc
Q 038149 592 DLRDNEFS-GNIA---HLINEDSNLRALLLRGNNLQ--G---NIPEPLCHLRKLAIVDISYNTLN----GPIPSCFTNIS 658 (844)
Q Consensus 592 ~Ls~N~l~-~~~~---~~l~~l~~L~~L~L~~N~l~--~---~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~ 658 (844)
++++|+++ +.++ ..+..+++|++|++++|+++ | ..|..+..+++|+.|+|++|.++ +.+|..+..
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-- 242 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-- 242 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG--
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc--
Confidence 77777765 3334 34556677777777777766 2 33446667777777777777775 334444433
Q ss_pred cccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC----CCchhhh--cccc
Q 038149 659 LWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD----IPSEIGY--LGEI 732 (844)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~----ip~~l~~--l~~L 732 (844)
+++|++|+|++|++++. +|..+.. +++|
T Consensus 243 ----------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L 276 (386)
T 2ca6_A 243 ----------------------------------------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276 (386)
T ss_dssp ----------------------------------------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred ----------------------------------------------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe
Confidence 34677777887777754 4555633 7888
Q ss_pred CeEeccCccccc----ccCccc-ccccCCCEEeCCCCcccccCC
Q 038149 733 HALNLSNNFLSG----SIPRSF-SNLKMTESMDLSYNKLNGQIP 771 (844)
Q Consensus 733 ~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~Ls~N~l~~~ip 771 (844)
++|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 277 ~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888888888887 477777 667888888888888887664
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.6e-23 Score=222.00 Aligned_cols=249 Identities=18% Similarity=0.205 Sum_probs=165.9
Q ss_pred CcEEEccCcccCcCCChhhhcC--CCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCccc-CCCCC-CCCCCcEEE
Q 038149 493 LYVLDVSNNMLSGQLPRWIGKF--SNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGP-LEFSS-NHSSLRYLF 568 (844)
Q Consensus 493 L~~L~ls~n~l~~~~p~~l~~l--~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~~~~-~~~~L~~L~ 568 (844)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++... .+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 444444444443 2333333 4555555555555444333 33455555555555554432 22222 455666666
Q ss_pred CCCCccccccCccccCCCCCCEEECCCC-cCCc-ccchhhhCCCCCCEEEccCC-ccccc-CCcccCCCC-CCCEEEcCC
Q 038149 569 PHNNSLSGTIPNALLQSSQLTTLDLRDN-EFSG-NIAHLINEDSNLRALLLRGN-NLQGN-IPEPLCHLR-KLAIVDISY 643 (844)
Q Consensus 569 l~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~-~~~~~l~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls~ 643 (844)
+++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666666677777888888888888888 6765 36677788888888888888 88754 566677888 889999988
Q ss_pred C--ccc-cCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCc-cc
Q 038149 644 N--TLN-GPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNE-LT 719 (844)
Q Consensus 644 N--~l~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~ 719 (844)
| .++ +.+|..+.. +++|++|++++|. ++
T Consensus 205 ~~~~~~~~~l~~~~~~------------------------------------------------~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRR------------------------------------------------CPNLVHLDLSDSVMLK 236 (336)
T ss_dssp CGGGSCHHHHHHHHHH------------------------------------------------CTTCSEEECTTCTTCC
T ss_pred CcccCCHHHHHHHHhh------------------------------------------------CCCCCEEeCCCCCcCC
Confidence 8 444 233443332 5678899999998 77
Q ss_pred CCCCchhhhccccCeEeccCcc-cccccCcccccccCCCEEeCCCCcccccCCccccCC-CCCCEEEccCCcccccCCCC
Q 038149 720 GDIPSEIGYLGEIHALNLSNNF-LSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGEL-SFLAIFNVSYNNLSGTVPNK 797 (844)
Q Consensus 720 g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip~~ 797 (844)
+..+..++.+++|++|++++|. ++......++++++|+.|++++| ++. ..+..+ ..|..|++++|+++|..|..
T Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 7788888999999999999995 33332336888999999999998 332 234444 34777789999999988864
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=215.99 Aligned_cols=231 Identities=16% Similarity=0.141 Sum_probs=139.3
Q ss_pred CCcEEEccCcccCcC----CChhhhcCCCCCEEeCCCCcccccCCccc--cCCCCCCEEecCCCcCcccCCCCCCCCCCc
Q 038149 492 SLYVLDVSNNMLSGQ----LPRWIGKFSNLDVLLMSRNSFEGDVSVQL--SNLEVARILDISENKLYGPLEFSSNHSSLR 565 (844)
Q Consensus 492 ~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~~~~~l--~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~ 565 (844)
.++.+.+.++.++.. ++. +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------ 137 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------ 137 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH------
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH------
Confidence 455555555554321 111 1234557777777777776666666 666777777777776654332110
Q ss_pred EEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc--C--CcccCCCCCCCEEEc
Q 038149 566 YLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN--I--PEPLCHLRKLAIVDI 641 (844)
Q Consensus 566 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~L 641 (844)
...+..+++|++|++++|++.+..+..++.+++|++|+|++|++.+. + +..+..+++|++|+|
T Consensus 138 -------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 138 -------------ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp -------------HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred -------------HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence 01233455666666666666655555666666666666666665432 1 222356677777777
Q ss_pred CCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC
Q 038149 642 SYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD 721 (844)
Q Consensus 642 s~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 721 (844)
++|+++. +|.....+ ...+++|++|||++|++++.
T Consensus 205 s~N~l~~-l~~~~~~l--------------------------------------------~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 205 RNTGMET-PTGVCAAL--------------------------------------------AAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CSSCCCC-HHHHHHHH--------------------------------------------HHHTCCCSSEECTTSCCCCC
T ss_pred CCCCCCc-hHHHHHHH--------------------------------------------HhcCCCCCEEECCCCCCCcc
Confidence 7777752 22210000 00145677788888888777
Q ss_pred CCchhhhc---cccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149 722 IPSEIGYL---GEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG 792 (844)
Q Consensus 722 ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 792 (844)
+|..+..+ ++|++|+|++|+|+ .+|..+. ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 67777666 57888888888887 6677664 6888888888888753 33 5677888888888888753
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3e-22 Score=212.58 Aligned_cols=201 Identities=22% Similarity=0.298 Sum_probs=166.9
Q ss_pred CCCCcEEECCCCccccccCccc--cCCCCCCEEECCCCcCCcccc----hhhhCCCCCCEEEccCCcccccCCcccCCCC
Q 038149 561 HSSLRYLFPHNNSLSGTIPNAL--LQSSQLTTLDLRDNEFSGNIA----HLINEDSNLRALLLRGNNLQGNIPEPLCHLR 634 (844)
Q Consensus 561 ~~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 634 (844)
.++|++|++++|.+++..|..+ ..+++|++|++++|++++..+ ..+..+++|++|+|++|++.+..|..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557788888888888888887 889999999999999997555 3446799999999999999988889999999
Q ss_pred CCCEEEcCCCccccC--CCc--hhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceE
Q 038149 635 KLAIVDISYNTLNGP--IPS--CFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTG 710 (844)
Q Consensus 635 ~L~~L~Ls~N~l~~~--~p~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 710 (844)
+|++|+|++|++.+. ++. +++ .+++|++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~------------------------------------------------~l~~L~~ 201 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPH------------------------------------------------KFPAIQN 201 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTT------------------------------------------------SSCCCCS
T ss_pred CCCEEECCCCCCccchhhhHHHhhh------------------------------------------------cCCCCCE
Confidence 999999999998642 111 111 1568999
Q ss_pred EEeecCcccCCCCc----hhhhccccCeEeccCcccccccCcccccc---cCCCEEeCCCCcccccCCccccCCCCCCEE
Q 038149 711 LDLSSNELTGDIPS----EIGYLGEIHALNLSNNFLSGSIPRSFSNL---KMTESMDLSYNKLNGQIPPELGELSFLAIF 783 (844)
Q Consensus 711 LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 783 (844)
|+|++|+++ .+|. .++.+++|++|+|++|++++.+|..++.+ ++|++|+|++|+++ .+|..+. ++|++|
T Consensus 202 L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 202 LALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp CBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred EECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 999999997 4444 25788999999999999999889888887 69999999999999 7888875 899999
Q ss_pred EccCCcccccCCCCCcCCCcCccccCCCCCC
Q 038149 784 NVSYNNLSGTVPNKGQFANFDESNYRGNPYL 814 (844)
Q Consensus 784 ~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~l 814 (844)
++++|++++. |....+..+..+.+.||+..
T Consensus 278 ~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 278 DLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred ECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 9999999973 44456778888899999753
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=8.6e-23 Score=219.86 Aligned_cols=198 Identities=16% Similarity=0.129 Sum_probs=117.8
Q ss_pred CCCcEEeCcCcccCCcCCccccCC--CCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcC-CChhhhcCCCCCE
Q 038149 443 VSLEFMNLSHNYFDGQIFPKYMNL--AKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQ-LPRWIGKFSNLDV 519 (844)
Q Consensus 443 ~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~ 519 (844)
..++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34778888888776 3445555 7788888888888766554 45678888888888887765 6777788888888
Q ss_pred EeCCCCcccccCCccccCCCCCCEEecCCC-cCccc-CCCCC-CCCCCcEEECCCC-ccccc-cCccccCCC-CCCEEEC
Q 038149 520 LLMSRNSFEGDVSVQLSNLEVARILDISEN-KLYGP-LEFSS-NHSSLRYLFPHNN-SLSGT-IPNALLQSS-QLTTLDL 593 (844)
Q Consensus 520 L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n-~l~~~-~~~~~-~~~~L~~L~l~~n-~l~~~-~p~~l~~l~-~L~~L~L 593 (844)
|++++|.+++..+..+..+++|++|++++| .+++. ++... .+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 888888887777777777777777777777 44421 22211 3444444554444 44432 333444444 4444444
Q ss_pred CCC--cCC-cccchhhhCCCCCCEEEccCCc-ccccCCcccCCCCCCCEEEcCCC
Q 038149 594 RDN--EFS-GNIAHLINEDSNLRALLLRGNN-LQGNIPEPLCHLRKLAIVDISYN 644 (844)
Q Consensus 594 s~N--~l~-~~~~~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N 644 (844)
++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 444 232 2333444444444444444444 33333334444444444444444
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2e-21 Score=197.96 Aligned_cols=200 Identities=20% Similarity=0.168 Sum_probs=130.5
Q ss_pred CCCcEEECCCCccccccCccccCCCCCCEEECCCCc-CCcccchhhhCCCCCCEEEccC-CcccccCCcccCCCCCCCEE
Q 038149 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE-FSGNIAHLINEDSNLRALLLRG-NNLQGNIPEPLCHLRKLAIV 639 (844)
Q Consensus 562 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L 639 (844)
.+|+.|++++|++++..+..|..+++|++|++++|+ +++..+..+..+++|++|++++ |++++..+..|..+++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 356666666666665555567777777777777775 6655555677777777777776 77776656667777777777
Q ss_pred EcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecC-cc
Q 038149 640 DISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSN-EL 718 (844)
Q Consensus 640 ~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N-~l 718 (844)
++++|++++ +|. |..+.. +..|++|++++| ++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~---------------------------------------------L~~L~~L~l~~N~~l 143 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYS---------------------------------------------TDIFFILEITDNPYM 143 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCB---------------------------------------------CCSEEEEEEESCTTC
T ss_pred eCCCCCCcc-ccc-cccccc---------------------------------------------cccccEEECCCCcch
Confidence 777777764 444 433210 122347777777 77
Q ss_pred cCCCCchhhhccccC-eEeccCcccccccCcccccccCCCEEeCCCCc-ccccCCccccCC-CCCCEEEccCCcccccCC
Q 038149 719 TGDIPSEIGYLGEIH-ALNLSNNFLSGSIPRSFSNLKMTESMDLSYNK-LNGQIPPELGEL-SFLAIFNVSYNNLSGTVP 795 (844)
Q Consensus 719 ~g~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip 795 (844)
++..+..|..+++|+ +|++++|+++ .+|......++|+.|++++|+ +++..+..+..+ ++|+.|++++|++++ +|
T Consensus 144 ~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~ 221 (239)
T 2xwt_C 144 TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LP 221 (239)
T ss_dssp CEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CC
T ss_pred hhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CC
Confidence 755555677777777 7777777777 455443333677777777774 776656667777 777777777777764 44
Q ss_pred CCCcCCCcCccccCCC
Q 038149 796 NKGQFANFDESNYRGN 811 (844)
Q Consensus 796 ~~~~~~~~~~~~~~gn 811 (844)
.. .|..+..+.+.++
T Consensus 222 ~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 222 SK-GLEHLKELIARNT 236 (239)
T ss_dssp CT-TCTTCSEEECTTC
T ss_pred hh-HhccCceeeccCc
Confidence 33 4555665555544
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.6e-21 Score=196.07 Aligned_cols=198 Identities=18% Similarity=0.182 Sum_probs=135.7
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCC
Q 038149 516 NLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRD 595 (844)
Q Consensus 516 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 595 (844)
+|++|++++|.+++..+..|.++++|++|++++|+. +++..+..|..+++|++|++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~----------------------l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT----------------------LQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS----------------------CCEECTTTEESCTTCCEEEEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC----------------------cceeCHhHcCCCcCCcEEECCC
Confidence 566666666666655555555555555555555541 4434444667777777777777
Q ss_pred -CcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCC---EEEcCCC-ccccCCCchhhccccccccCcccccc
Q 038149 596 -NEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLA---IVDISYN-TLNGPIPSCFTNISLWMEKGNYYNST 670 (844)
Q Consensus 596 -N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~~~~~~~~~~~~ 670 (844)
|++++..+..|..+++|++|++++|++++ +|. +..+++|+ .|++++| .+++..+..|.+
T Consensus 90 ~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~-------------- 153 (239)
T 2xwt_C 90 TRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG-------------- 153 (239)
T ss_dssp ETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT--------------
T ss_pred CCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc--------------
Confidence 77776666677777777777777777774 555 67777777 8888888 776555545544
Q ss_pred cccCCCcccccccccceeeeeeeccccccccccccccce-EEEeecCcccCCCCchhhhccccCeEeccCcc-cccccCc
Q 038149 671 LSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMT-GLDLSSNELTGDIPSEIGYLGEIHALNLSNNF-LSGSIPR 748 (844)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~ 748 (844)
+++|+ +|++++|+++ .+|......++|+.|+|++|+ +++..+.
T Consensus 154 ----------------------------------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 154 ----------------------------------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp ----------------------------------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred ----------------------------------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHH
Confidence 44677 8888888887 566544444788888888884 8866667
Q ss_pred ccccc-cCCCEEeCCCCcccccCCccccCCCCCCEEEccCCc
Q 038149 749 SFSNL-KMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNN 789 (844)
Q Consensus 749 ~l~~l-~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~ 789 (844)
.|..+ ++|+.||+++|+++ .+|.. .+++|+.|+++++.
T Consensus 199 ~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred HhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 78888 88888888888888 45544 67778888887763
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.4e-20 Score=199.10 Aligned_cols=195 Identities=17% Similarity=0.290 Sum_probs=106.1
Q ss_pred hhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCE
Q 038149 511 IGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTT 590 (844)
Q Consensus 511 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 590 (844)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-------------------------~~~l~~L~~ 89 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-------------------------LKNLTKITE 89 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-------------------------GTTCCSCCE
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-------------------------HccCCCCCE
Confidence 3456677777777777764 33 45666666666666666553332 444555555
Q ss_pred EECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccc
Q 038149 591 LDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNST 670 (844)
Q Consensus 591 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~ 670 (844)
|++++|++++. + .+..+++|++|++++|++++. + .+..+++|+.|++++|++++..+ ++.
T Consensus 90 L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~-------------- 149 (308)
T 1h6u_A 90 LELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG-------------- 149 (308)
T ss_dssp EECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG--------------
T ss_pred EEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC--------------
Confidence 55555555432 2 344555555555555555532 2 25555555555555555543221 211
Q ss_pred cccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCccc
Q 038149 671 LSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSF 750 (844)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 750 (844)
+++|++|+|++|++++ ++. +..+++|+.|++++|++++..+ +
T Consensus 150 ----------------------------------l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l 191 (308)
T 1h6u_A 150 ----------------------------------LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--L 191 (308)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred ----------------------------------CCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--h
Confidence 3455556666666553 232 5556666666666666654332 5
Q ss_pred ccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149 751 SNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG 792 (844)
Q Consensus 751 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 792 (844)
..+++|+.|+|++|++++..| +..+++|+.|++++|++++
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 556666666666666654332 5566666666666666654
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.4e-20 Score=197.39 Aligned_cols=209 Identities=22% Similarity=0.275 Sum_probs=122.7
Q ss_pred EEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCC
Q 038149 398 YLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDN 477 (844)
Q Consensus 398 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 477 (844)
.+.+..+.+++.+ ....+++|++|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN 95 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence 3344445544322 2445667777777777665 3442 3556666666666666655432 556666666666666
Q ss_pred cCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCC
Q 038149 478 QFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEF 557 (844)
Q Consensus 478 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 557 (844)
++++. + .+..+++|++|++++|++++. + .+..+++|++|++++|.+++..+ +..+
T Consensus 96 ~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l------------------- 150 (308)
T 1h6u_A 96 PLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGL------------------- 150 (308)
T ss_dssp CCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGC-------------------
T ss_pred cCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCC-------------------
Confidence 65542 2 355555666666666655532 2 25555555555555555543322 4444
Q ss_pred CCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCC
Q 038149 558 SSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLA 637 (844)
Q Consensus 558 ~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 637 (844)
++|+.|++++|++++. +. +..+++|+.|++++|++++..+ +..+++|++|++++|++++.. .+..+++|+
T Consensus 151 ----~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~ 220 (308)
T 1h6u_A 151 ----TNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLF 220 (308)
T ss_dssp ----TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCC
T ss_pred ----CCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCC
Confidence 4455555555555532 22 6667777777777777775433 667777777777777777544 267777777
Q ss_pred EEEcCCCcccc
Q 038149 638 IVDISYNTLNG 648 (844)
Q Consensus 638 ~L~Ls~N~l~~ 648 (844)
.|++++|++++
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 77777777763
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=9.8e-20 Score=206.57 Aligned_cols=189 Identities=24% Similarity=0.361 Sum_probs=125.6
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECC
Q 038149 515 SNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLR 594 (844)
Q Consensus 515 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls 594 (844)
.+++.|++++|.+++ +|..+ .++|++|++++|.+. .+| ..+++|+.|++++|++++ +|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 378888888888876 55544 367888888888877 444 346777777777777775 555 444 67777777
Q ss_pred CCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccC
Q 038149 595 DNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLA 674 (844)
Q Consensus 595 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~ 674 (844)
+|++++ +|. .+++|++|+|++|++++ +|. .+++|+.|+|++|+|++ +|. |.
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------- 179 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------- 179 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-------------------
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-------------------
Confidence 777775 444 46777777777777774 554 45667777777777764 443 31
Q ss_pred CCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhcccc-------CeEeccCcccccccC
Q 038149 675 LPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEI-------HALNLSNNFLSGSIP 747 (844)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~l~~~ip 747 (844)
++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|
T Consensus 180 -------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp 223 (571)
T 3cvr_A 180 -------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIP 223 (571)
T ss_dssp -------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCC
T ss_pred -------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecC
Confidence 24666777777777 5665 443 55 67777777776 566
Q ss_pred cccccccCCCEEeCCCCcccccCCccccCCC
Q 038149 748 RSFSNLKMTESMDLSYNKLNGQIPPELGELS 778 (844)
Q Consensus 748 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 778 (844)
..+..+++|+.|+|++|++++.+|..+..++
T Consensus 224 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp GGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 6666677777777777777776666665543
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=8.5e-20 Score=207.06 Aligned_cols=197 Identities=25% Similarity=0.295 Sum_probs=161.7
Q ss_pred CCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECC
Q 038149 491 SSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPH 570 (844)
Q Consensus 491 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~ 570 (844)
.+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. + ..+|+.|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l-~~~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L-PASLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C-CTTCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h-hcCCCEEECC
Confidence 389999999999986 67655 378999999999998 566 457899999999999988 555 3 2299999999
Q ss_pred CCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCC
Q 038149 571 NNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPI 650 (844)
Q Consensus 571 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 650 (844)
+|++++ +|. .+++|+.|++++|++++ +|. .+++|++|+|++|++++ +|. +. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999996 666 68899999999999996 565 57899999999999996 777 66 89999999999998 66
Q ss_pred CchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhcc
Q 038149 651 PSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLG 730 (844)
Q Consensus 651 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 730 (844)
|. |.. . + ....+.|+.|+|++|+|+ .+|..+..++
T Consensus 196 p~-~~~-~-L-----------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~ 230 (571)
T 3cvr_A 196 PA-VPV-R-N-----------------------------------------HHSEETEIFFRCRENRIT-HIPENILSLD 230 (571)
T ss_dssp CC-CC---------------------------------------------------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred hh-HHH-h-h-----------------------------------------hcccccceEEecCCCcce-ecCHHHhcCC
Confidence 65 432 0 0 000234689999999999 7899999999
Q ss_pred ccCeEeccCcccccccCcccccccC
Q 038149 731 EIHALNLSNNFLSGSIPRSFSNLKM 755 (844)
Q Consensus 731 ~L~~L~Ls~N~l~~~ip~~l~~l~~ 755 (844)
+|+.|+|++|.+++.+|..+..++.
T Consensus 231 ~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 9999999999999999999888765
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.8e-19 Score=194.52 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=76.0
Q ss_pred CEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCC-ccccCCCCCCEEecCC
Q 038149 470 VFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVS-VQLSNLEVARILDISE 548 (844)
Q Consensus 470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~ 548 (844)
++++.++++++ .+|..+ .+++++|++++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++..
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~----- 83 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE----- 83 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE-----
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh-----
Confidence 34555555555 344433 3455666666666654333445555566666666555544333 23444444432
Q ss_pred CcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccC-CcccccCC
Q 038149 549 NKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRG-NNLQGNIP 627 (844)
Q Consensus 549 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~p 627 (844)
.+.+.+|+++...|..|..+++|++|++++|++.+..+..+....++..|++.+ +++....+
T Consensus 84 -----------------~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 84 -----------------IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146 (350)
T ss_dssp -----------------EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred -----------------hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc
Confidence 233334444444455555555555555555555544444444444555555543 34443333
Q ss_pred cccCCCC-CCCEEEcCCCccc
Q 038149 628 EPLCHLR-KLAIVDISYNTLN 647 (844)
Q Consensus 628 ~~l~~l~-~L~~L~Ls~N~l~ 647 (844)
..+..+. .++.|+|++|+|+
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCC
T ss_pred cchhhcchhhhhhcccccccc
Confidence 3444442 3555666666655
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=8.6e-20 Score=181.45 Aligned_cols=175 Identities=23% Similarity=0.242 Sum_probs=135.0
Q ss_pred cEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149 565 RYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN 644 (844)
Q Consensus 565 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 644 (844)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555555555 444433 357888888888888766667788888888888888888666666788888888888888
Q ss_pred ccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCc
Q 038149 645 TLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPS 724 (844)
Q Consensus 645 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 724 (844)
++++..+..|.+ +++|++|+|++|++++..+.
T Consensus 87 ~l~~~~~~~~~~------------------------------------------------l~~L~~L~L~~N~l~~~~~~ 118 (208)
T 2o6s_A 87 QLQSLPNGVFDK------------------------------------------------LTQLKELALNTNQLQSLPDG 118 (208)
T ss_dssp CCCCCCTTTTTT------------------------------------------------CTTCCEEECCSSCCCCCCTT
T ss_pred cCCccCHhHhcC------------------------------------------------ccCCCEEEcCCCcCcccCHh
Confidence 887555554544 45788888999988876666
Q ss_pred hhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCC
Q 038149 725 EIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNK 797 (844)
Q Consensus 725 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 797 (844)
.+..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+. ++.|++|+++.|+++|.+|..
T Consensus 119 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCT
T ss_pred HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeecc
Confidence 788889999999999999877776788899999999999988754 457889999999999999864
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=8.8e-20 Score=181.38 Aligned_cols=163 Identities=21% Similarity=0.176 Sum_probs=120.6
Q ss_pred CCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 038149 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDI 641 (844)
Q Consensus 562 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 641 (844)
++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666777777776555566777788888888888887666666777888888888888887666666778888888888
Q ss_pred CCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC
Q 038149 642 SYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD 721 (844)
Q Consensus 642 s~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 721 (844)
++|++++..+..|.. +++|++|+|++|++++.
T Consensus 108 ~~N~l~~~~~~~~~~------------------------------------------------l~~L~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDK------------------------------------------------LTQLKDLRLYQNQLKSV 139 (208)
T ss_dssp CSSCCCCCCTTTTTT------------------------------------------------CTTCCEEECCSSCCSCC
T ss_pred CCCcCcccCHhHhcc------------------------------------------------CCcCCEEECCCCcccee
Confidence 888887555544443 45677888888888866
Q ss_pred CCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCC
Q 038149 722 IPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSF 779 (844)
Q Consensus 722 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 779 (844)
.+..+..+++|++|++++|.+.+. +++|+.|+++.|+++|.+|..++.++.
T Consensus 140 ~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 140 PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 666678888888888888877643 446788888888888888887776654
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=9.1e-20 Score=182.56 Aligned_cols=157 Identities=20% Similarity=0.179 Sum_probs=119.3
Q ss_pred CEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEcCCCccccCCCchhhccccccccCccc
Q 038149 589 TTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIP-EPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYY 667 (844)
Q Consensus 589 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~ 667 (844)
+.+++++|.++. +|..+ ...+++|+|++|++++..| ..|..+++|+.|+|++|+|++..|..|.+
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 356666666663 45433 2345677777777776544 34677777778888877777666655554
Q ss_pred ccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccC
Q 038149 668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP 747 (844)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip 747 (844)
+++|++|+|++|++++..|..|..+++|++|+|++|+|++..|
T Consensus 80 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 80 -------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred -------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH
Confidence 4467788888888887777778888888888888888888888
Q ss_pred cccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCC
Q 038149 748 RSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN 796 (844)
Q Consensus 748 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 796 (844)
..|..+++|+.|+|++|++++..|..+..+++|++|++++|++++..+-
T Consensus 123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 8888888999999999999888888888889999999999998887663
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=5e-19 Score=191.04 Aligned_cols=241 Identities=17% Similarity=0.085 Sum_probs=155.1
Q ss_pred cEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCC-ccccCCCCcCE-ecC
Q 038149 397 VYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIF-PKYMNLAKLVF-LFL 474 (844)
Q Consensus 397 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L 474 (844)
++++.++++++ .+|..+ .+++++|+|++|+++ .+|...|.++++|++|+|++|++.+.++ ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34555555555 445444 245666666666664 4555545566666666666666544333 34556666554 444
Q ss_pred CCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCC-CcccccCCccccCCC-CCCEEecCCCcCc
Q 038149 475 NDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSR-NSFEGDVSVQLSNLE-VARILDISENKLY 552 (844)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~-n~l~~~~~~~l~~l~-~L~~L~ls~n~l~ 552 (844)
.+|+++...|..|..+++|++|++++|++++..+..+....++..+++.+ +.+....+..|..+. .++.|++++|++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 55666666666677777777777777777755555555666666777754 345544445555554 5777888888887
Q ss_pred ccCCCCCCCCCCcEEECCC-CccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccC
Q 038149 553 GPLEFSSNHSSLRYLFPHN-NSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLC 631 (844)
Q Consensus 553 ~~~~~~~~~~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 631 (844)
...+..+...+|+.+++.+ |.++...+..|..+++|++||+++|+++...+.. +.+|+.|.+.++.--..+| .+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 6666666677888888875 5555333456889999999999999998554444 4566666665554444677 478
Q ss_pred CCCCCCEEEcCCCc
Q 038149 632 HLRKLAIVDISYNT 645 (844)
Q Consensus 632 ~l~~L~~L~Ls~N~ 645 (844)
.+++|+.++++++.
T Consensus 244 ~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 244 KLVALMEASLTYPS 257 (350)
T ss_dssp TCCSCCEEECSCHH
T ss_pred hCcChhhCcCCCCc
Confidence 89999999998754
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=4e-19 Score=177.90 Aligned_cols=155 Identities=20% Similarity=0.243 Sum_probs=98.6
Q ss_pred CEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccc
Q 038149 589 TTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYN 668 (844)
Q Consensus 589 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~ 668 (844)
+.++++++.++ .+|..+. ++|++|++++|++++..+..|..+++|+.|+|++|++++..|..|.+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 34555555555 2343332 45666666666666555556666666666666666666555555544
Q ss_pred cccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCc
Q 038149 669 STLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPR 748 (844)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 748 (844)
+++|++|+|++|++++..+..|..+++|++|+|++|+|++..|.
T Consensus 79 ------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 122 (220)
T 2v9t_B 79 ------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 122 (220)
T ss_dssp ------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence 34566666666666644444456677777777777777776677
Q ss_pred ccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccC
Q 038149 749 SFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTV 794 (844)
Q Consensus 749 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 794 (844)
.|..+++|+.|+|++|++++..+..+..+++|++|++++|++.+..
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 7777777777777777777666666777777777777777776543
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=172.09 Aligned_cols=156 Identities=21% Similarity=0.217 Sum_probs=130.1
Q ss_pred cEEECCCCccccccCccccCCCCCCEEECCCCcCCcccc-hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCC
Q 038149 565 RYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA-HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISY 643 (844)
Q Consensus 565 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 643 (844)
+.+++++|.++ .+|..+. ..+++|++++|++++..+ ..+..+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46666777666 4565553 346788888888887654 4578889999999999999888778899999999999999
Q ss_pred CccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCC
Q 038149 644 NTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP 723 (844)
Q Consensus 644 N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 723 (844)
|++++..|..|.. +++|++|+|++|++++..|
T Consensus 91 N~l~~~~~~~~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 91 NRLENVQHKMFKG------------------------------------------------LESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp SCCCCCCGGGGTT------------------------------------------------CSSCCEEECTTSCCCCBCT
T ss_pred CccCccCHhHhcC------------------------------------------------CcCCCEEECCCCcCCeECH
Confidence 9998777766655 4578899999999998889
Q ss_pred chhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCC
Q 038149 724 SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP 771 (844)
Q Consensus 724 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 771 (844)
..+..+++|++|+|++|+|++..|..|..+++|+.|+|++|.+++..+
T Consensus 123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999999999999999998889999999999999999999987654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=3.6e-18 Score=172.18 Aligned_cols=157 Identities=24% Similarity=0.231 Sum_probs=118.6
Q ss_pred CCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCccc
Q 038149 588 LTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYY 667 (844)
Q Consensus 588 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~ 667 (844)
-+.++.++++++ .+|..+ .++|++|+|++|++++..|..+..+++|+.|+|++|+|++..+..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 355666666666 344433 267777777777777777777777777888888888776444444443
Q ss_pred ccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccC
Q 038149 668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP 747 (844)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip 747 (844)
+++|++|+|++|++++..+..+..+++|++|+|++|+|+ .+|
T Consensus 87 -------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp 128 (229)
T 3e6j_A 87 -------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP 128 (229)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred -------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence 456778888888888666666788888888888888888 788
Q ss_pred cccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCC
Q 038149 748 RSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPN 796 (844)
Q Consensus 748 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 796 (844)
..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+.
T Consensus 129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 8888888999999999998877667788889999999999998877663
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=4.1e-18 Score=178.50 Aligned_cols=169 Identities=20% Similarity=0.322 Sum_probs=105.7
Q ss_pred CCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 038149 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDI 641 (844)
Q Consensus 562 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 641 (844)
++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|++++ +| .+..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 344444444444442 22 35556666666666666665433 6666666666666666664 22 3666777777777
Q ss_pred CCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC
Q 038149 642 SYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD 721 (844)
Q Consensus 642 s~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 721 (844)
++|++++. ..+.. +++|++|++++|++++.
T Consensus 120 ~~n~i~~~--~~l~~------------------------------------------------l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 120 EHNGISDI--NGLVH------------------------------------------------LPQLESLYLGNNKITDI 149 (291)
T ss_dssp TTSCCCCC--GGGGG------------------------------------------------CTTCCEEECCSSCCCCC
T ss_pred CCCcCCCC--hhhcC------------------------------------------------CCCCCEEEccCCcCCcc
Confidence 77766542 12221 44667777777777743
Q ss_pred CCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149 722 IPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG 792 (844)
Q Consensus 722 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 792 (844)
..++.+++|++|++++|++++..| +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred --hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 456777777777777777775444 7777777777777777774 34 36777777777777777765
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.3e-18 Score=188.67 Aligned_cols=112 Identities=22% Similarity=0.116 Sum_probs=62.0
Q ss_pred CEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCcccc-CCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCC
Q 038149 542 RILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALL-QSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGN 620 (844)
Q Consensus 542 ~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 620 (844)
+.++++++.+.. +|... ...++.|++++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~-iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSS-CCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666666653 22221 23455666666666655555554 5566666666666666555555555666666666666
Q ss_pred cccccCCcccCCCCCCCEEEcCCCccccCCCchhh
Q 038149 621 NLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFT 655 (844)
Q Consensus 621 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 655 (844)
++++..+..|..+++|+.|+|++|+|++..|..|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 133 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE 133 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC
Confidence 66555455555556666666666655544444443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=4.8e-18 Score=170.01 Aligned_cols=153 Identities=22% Similarity=0.220 Sum_probs=126.6
Q ss_pred cEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCC
Q 038149 565 RYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYN 644 (844)
Q Consensus 565 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 644 (844)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666666 5565543 67888888888888777778888889999999999998888888999999999999999
Q ss_pred ccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCc
Q 038149 645 TLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPS 724 (844)
Q Consensus 645 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 724 (844)
+|++..+..|.. +++|++|+|++|++++..|.
T Consensus 91 ~l~~l~~~~f~~------------------------------------------------l~~L~~L~L~~N~l~~~~~~ 122 (220)
T 2v9t_B 91 KITELPKSLFEG------------------------------------------------LFSLQLLLLNANKINCLRVD 122 (220)
T ss_dssp CCCCCCTTTTTT------------------------------------------------CTTCCEEECCSSCCCCCCTT
T ss_pred cCCccCHhHccC------------------------------------------------CCCCCEEECCCCCCCEeCHH
Confidence 988544444544 45788999999999988888
Q ss_pred hhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149 725 EIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768 (844)
Q Consensus 725 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 768 (844)
.|..+++|++|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999999999999999998888889999999999999999875
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=2.2e-18 Score=186.84 Aligned_cols=180 Identities=25% Similarity=0.211 Sum_probs=151.2
Q ss_pred CcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhh-CCCCCCEEEccCCcccccCCcccCCCCCCCEEEcC
Q 038149 564 LRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLIN-EDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDIS 642 (844)
Q Consensus 564 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 642 (844)
-+.++++++.++ .+|..+. ..++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 368999999998 5776654 4589999999999988888887 89999999999999998888889999999999999
Q ss_pred CCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCC
Q 038149 643 YNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI 722 (844)
Q Consensus 643 ~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i 722 (844)
+|+|++..+..|.+ +++|+.|+|++|++++..
T Consensus 97 ~N~l~~~~~~~~~~------------------------------------------------l~~L~~L~L~~N~i~~~~ 128 (361)
T 2xot_A 97 SNHLHTLDEFLFSD------------------------------------------------LQALEVLLLYNNHIVVVD 128 (361)
T ss_dssp SSCCCEECTTTTTT------------------------------------------------CTTCCEEECCSSCCCEEC
T ss_pred CCcCCcCCHHHhCC------------------------------------------------CcCCCEEECCCCcccEEC
Confidence 99998766666654 457899999999999888
Q ss_pred CchhhhccccCeEeccCcccccccCccc---ccccCCCEEeCCCCcccccCCccccCCCC--CCEEEccCCcccccC
Q 038149 723 PSEIGYLGEIHALNLSNNFLSGSIPRSF---SNLKMTESMDLSYNKLNGQIPPELGELSF--LAIFNVSYNNLSGTV 794 (844)
Q Consensus 723 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~--L~~L~ls~N~l~g~i 794 (844)
|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..+..++. ++.|++++|++.+..
T Consensus 129 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 129 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 8899999999999999999995444444 67999999999999999766677888877 488999999998653
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.4e-17 Score=167.72 Aligned_cols=156 Identities=21% Similarity=0.227 Sum_probs=131.3
Q ss_pred CcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCC
Q 038149 564 LRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISY 643 (844)
Q Consensus 564 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 643 (844)
.+.++.+++.++ .+|..+. ++|++|++++|++++..|..+..+++|++|+|++|+++...+..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777766 5665543 7899999999999988888899999999999999999866667788999999999999
Q ss_pred CccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCC
Q 038149 644 NTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP 723 (844)
Q Consensus 644 N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 723 (844)
|+|++..+..|.. +++|++|+|++|+++ .+|
T Consensus 98 N~l~~l~~~~~~~------------------------------------------------l~~L~~L~Ls~N~l~-~lp 128 (229)
T 3e6j_A 98 NQLTVLPSAVFDR------------------------------------------------LVHLKELFMCCNKLT-ELP 128 (229)
T ss_dssp SCCCCCCTTTTTT------------------------------------------------CTTCCEEECCSSCCC-SCC
T ss_pred CcCCccChhHhCc------------------------------------------------chhhCeEeccCCccc-ccC
Confidence 9998666655554 467899999999999 889
Q ss_pred chhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCC
Q 038149 724 SEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIP 771 (844)
Q Consensus 724 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 771 (844)
..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|.+.+..+
T Consensus 129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999999999999999999997777789999999999999999986543
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=7.1e-18 Score=193.62 Aligned_cols=190 Identities=19% Similarity=0.265 Sum_probs=132.5
Q ss_pred CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCC
Q 038149 444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMS 523 (844)
Q Consensus 444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls 523 (844)
.+..+.+..+.+.+..+ +..++.|+.|++++|.+... + .+..+++|+.|+|++|++++..| +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 45555666666665432 45677888888888888743 3 47778888888888888886544 7788888888888
Q ss_pred CCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccc
Q 038149 524 RNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIA 603 (844)
Q Consensus 524 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 603 (844)
+|.+.+. + .+..+++|+.|++++|.+.+. +....+++|+.|++++|.+++. ..+..+++|+.|+|++|++.+..|
T Consensus 96 ~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 96 ENKIKDL-S-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SSCCCCC-T-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCCC-h-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 8888752 3 577778888888888877653 3333667777777777777654 456677777777777777776555
Q ss_pred hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCcccc
Q 038149 604 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNG 648 (844)
Q Consensus 604 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 648 (844)
+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 66677777777777777643 346667777777777777653
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=2e-20 Score=213.70 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=47.4
Q ss_pred ccceEEEeecCcccCCCCchhhhccccCeEeccCccccccc-CcccccccCCCEEeCCCCcccccCCcc---ccCCCCCC
Q 038149 706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSI-PRSFSNLKMTESMDLSYNKLNGQIPPE---LGELSFLA 781 (844)
Q Consensus 706 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~ip~~---l~~l~~L~ 781 (844)
++|+.|+|++|++++ +| .++.+++|++|+|++|+|++.+ |..++.+++|+.|+|++|++++.+|.. +..+++|+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 355566666666664 55 5666666666666666666555 666666666666666666666554422 23356666
Q ss_pred EEEc
Q 038149 782 IFNV 785 (844)
Q Consensus 782 ~L~l 785 (844)
+||+
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 6653
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=5.6e-18 Score=165.64 Aligned_cols=114 Identities=21% Similarity=0.293 Sum_probs=75.9
Q ss_pred cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEE
Q 038149 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFN 784 (844)
Q Consensus 705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 784 (844)
+++|++|+|++|++++..|..|+.+++|++|+|++|+|++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 34566777777777766677777777777777777777777777777777777777777777777777777777777777
Q ss_pred ccCCcccccCCCCCcCCCcCccccCCCCCCcCcc
Q 038149 785 VSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPA 818 (844)
Q Consensus 785 ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~ 818 (844)
+++|+++|..|.......+....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 7777777766532211112223344555556543
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.1e-17 Score=164.41 Aligned_cols=155 Identities=17% Similarity=0.244 Sum_probs=103.2
Q ss_pred cCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccc
Q 038149 583 LQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWME 662 (844)
Q Consensus 583 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~ 662 (844)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|+.|++++|++++..|..++.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 44556666777766666 344 4666667777777777554 2335666777777777777776555555443
Q ss_pred cCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCccc
Q 038149 663 KGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFL 742 (844)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 742 (844)
+++|++|++++|++++..|..++.+++|++|++++|.+
T Consensus 111 ------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~ 148 (197)
T 4ezg_A 111 ------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148 (197)
T ss_dssp ------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB
T ss_pred ------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC
Confidence 34667777777777776777777777888888888873
Q ss_pred ccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149 743 SGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG 792 (844)
Q Consensus 743 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 792 (844)
.+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 149 i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 149 ITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 33555 57778888888888888775 44 67778888888888887754
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=1.3e-17 Score=174.56 Aligned_cols=171 Identities=20% Similarity=0.212 Sum_probs=75.6
Q ss_pred cccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCc
Q 038149 415 GYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLY 494 (844)
Q Consensus 415 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 494 (844)
..+++|+.|++++|.+. .++. +..+++|++|++++|++++..+ +..+++|++|++++|.+++
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~------------- 104 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD------------- 104 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-------------
T ss_pred hhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-------------
Confidence 44555555555555554 2332 3445555555555555544322 4444444444444444442
Q ss_pred EEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcc
Q 038149 495 VLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSL 574 (844)
Q Consensus 495 ~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l 574 (844)
+| .+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. +....+++|+.|++++|++
T Consensus 105 ------------~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 105 ------------LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp ------------GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC
T ss_pred ------------Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc
Confidence 11 234444444444444444321 1233344444444444433321 1111233333333334444
Q ss_pred ccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccc
Q 038149 575 SGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQ 623 (844)
Q Consensus 575 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 623 (844)
++..+ +..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 33222 44555555555555555532 2 2455555555555555554
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.9e-17 Score=190.17 Aligned_cols=194 Identities=20% Similarity=0.195 Sum_probs=167.4
Q ss_pred cccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEE
Q 038149 417 MERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVL 496 (844)
Q Consensus 417 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 496 (844)
+..+..+.+..+.+.+.++ ...+++|+.|++++|.+... +.+..+++|+.|+|++|.+.+..+ +..+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 4456677888888875554 35778999999999999864 368899999999999999997665 8899999999
Q ss_pred EccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCcccc
Q 038149 497 DVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSG 576 (844)
Q Consensus 497 ~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 576 (844)
+|++|.+++ +| .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+. +....+++|+.|+|++|.+++
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC
Confidence 999999985 44 689999999999999999864 4588999999999999999876 444489999999999999997
Q ss_pred ccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccC
Q 038149 577 TIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNI 626 (844)
Q Consensus 577 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 626 (844)
..| +..+++|+.|+|++|++++. + .+..+++|+.|+|++|++.+..
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCC
T ss_pred chh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCc
Confidence 766 89999999999999999974 3 5899999999999999998643
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3e-17 Score=161.30 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=122.3
Q ss_pred CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEE
Q 038149 560 NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIV 639 (844)
Q Consensus 560 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 639 (844)
.+++|+.|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..|..++.+++|+.|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3455666666666666 455 57888889999999997653 3468889999999999999998888889999999999
Q ss_pred EcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCccc
Q 038149 640 DISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELT 719 (844)
Q Consensus 640 ~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 719 (844)
++++|++++..|..++. +++|++|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~------------------------------------------------l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 118 DISHSAHDDSILTKINT------------------------------------------------LPKVNSIDLSYNGAI 149 (197)
T ss_dssp ECCSSBCBGGGHHHHTT------------------------------------------------CSSCCEEECCSCTBC
T ss_pred EecCCccCcHhHHHHhh------------------------------------------------CCCCCEEEccCCCCc
Confidence 99999998777776655 457889999999844
Q ss_pred CCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149 720 GDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768 (844)
Q Consensus 720 g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 768 (844)
+.+| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 150 ~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 150 TDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 4676 68999999999999999985 44 78999999999999999864
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=4.5e-18 Score=200.45 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=77.9
Q ss_pred cCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCC
Q 038149 530 DVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINED 609 (844)
Q Consensus 530 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l 609 (844)
..+..+..++.|+.|+|++|.+....+..+.+++|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+|..++.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3455666677777777777776532223336666777777777776 66666677777777777777766 556666667
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhc
Q 038149 610 SNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTN 656 (844)
Q Consensus 610 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 656 (844)
++|++|+|++|.++ .+|..|+.+++|+.|+|++|+|++.+|..+..
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 77777777777665 56666666777777777777776666666544
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2.3e-17 Score=161.32 Aligned_cols=181 Identities=22% Similarity=0.284 Sum_probs=111.6
Q ss_pred CEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEEcCCCccccCCCchhhccccccccCccc
Q 038149 589 TTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPE-PLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYY 667 (844)
Q Consensus 589 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~ 667 (844)
+.+++++|+++ .+|..+. .+|++|++++|++++..+. .+..+++|++|+|++|+|++..|..|.+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 45666666664 3444332 2666777777776655443 3667777777777777777666666654
Q ss_pred ccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccC
Q 038149 668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP 747 (844)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip 747 (844)
+++|++|+|++|++++..|..|..+++|++|+|++|+|++.+|
T Consensus 77 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 77 -------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp -------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred -------------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence 3467777777777777777777888888888888888888888
Q ss_pred cccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccccCCCCCcCCCcCccccCCCCCCcCccCCCCC
Q 038149 748 RSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGTVPNKGQFANFDESNYRGNPYLCGPAVRKNC 823 (844)
Q Consensus 748 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~~~~c 823 (844)
..|+.+++|++|+|++|.+++..+...- ...++...+..+...+..|.. +....-.++..+...|..+....|
T Consensus 120 ~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~~~~~c 192 (192)
T 1w8a_A 120 GSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSENSEGC 192 (192)
T ss_dssp TSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC---CC
T ss_pred HHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCCCCCCC
Confidence 8888888888888888888876542110 011222233444444444443 222333345556666655433333
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4e-19 Score=202.89 Aligned_cols=177 Identities=19% Similarity=0.173 Sum_probs=143.9
Q ss_pred CCCCcEEECCCCccccccCccccCCCCCCEEECCCCc-------------CCcccchhhhCCCCCCEEE-ccCCc-----
Q 038149 561 HSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNE-------------FSGNIAHLINEDSNLRALL-LRGNN----- 621 (844)
Q Consensus 561 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-------------l~~~~~~~l~~l~~L~~L~-L~~N~----- 621 (844)
.+.|+.|++++|+++ .+|..++++++|+.|++++|. +.+.+|..++.+++|+.|+ ++.|.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 455666666666665 667777777777777776664 5566777777788888777 55553
Q ss_pred --------ccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeee
Q 038149 622 --------LQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMA 693 (844)
Q Consensus 622 --------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (844)
++.. |. ..|+.|+|++|.|++ +|. ++.
T Consensus 427 ~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~------------------------------------- 461 (567)
T 1dce_A 427 SKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQ------------------------------------- 461 (567)
T ss_dssp HHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGG-------------------------------------
T ss_pred hhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccc-------------------------------------
Confidence 3322 11 258999999999986 565 654
Q ss_pred ccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccC-Cc
Q 038149 694 KNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQI-PP 772 (844)
Q Consensus 694 ~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~ 772 (844)
+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+|++ +| .++++++|+.|+|++|+|++.+ |.
T Consensus 462 -----------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 462 -----------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp -----------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG
T ss_pred -----------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH
Confidence 568899999999999 899999999999999999999996 77 8999999999999999999887 99
Q ss_pred cccCCCCCCEEEccCCcccccCCCC
Q 038149 773 ELGELSFLAIFNVSYNNLSGTVPNK 797 (844)
Q Consensus 773 ~l~~l~~L~~L~ls~N~l~g~ip~~ 797 (844)
.+..+++|+.|++++|++++.+|..
T Consensus 528 ~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 528 PLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp GGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred HHhcCCCCCEEEecCCcCCCCccHH
Confidence 9999999999999999999988765
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=4e-17 Score=168.14 Aligned_cols=169 Identities=19% Similarity=0.184 Sum_probs=116.2
Q ss_pred CCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 038149 562 SSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDI 641 (844)
Q Consensus 562 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 641 (844)
..+..++++++.+++. + .+..+++|++|++++|+++. ++ .+..+++|++|+|++|++++..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3444555556665533 2 45667777777777777763 34 56777777777777777775433 777777777777
Q ss_pred CCCccccCCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC
Q 038149 642 SYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD 721 (844)
Q Consensus 642 s~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 721 (844)
++|++++ +|... .++|++|+|++|++++
T Consensus 93 ~~N~l~~-l~~~~--------------------------------------------------~~~L~~L~L~~N~l~~- 120 (263)
T 1xeu_A 93 NRNRLKN-LNGIP--------------------------------------------------SACLSRLFLDNNELRD- 120 (263)
T ss_dssp CSSCCSC-CTTCC--------------------------------------------------CSSCCEEECCSSCCSB-
T ss_pred CCCccCC-cCccc--------------------------------------------------cCcccEEEccCCccCC-
Confidence 7777763 22110 0356778888888874
Q ss_pred CCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCccccc
Q 038149 722 IPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSGT 793 (844)
Q Consensus 722 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 793 (844)
+| .++.+++|++|+|++|++++. | .++.+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 121 ~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 121 TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 33 477788888888888888753 3 577888888888888888765 5677788888888888888765
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=7.4e-17 Score=166.13 Aligned_cols=170 Identities=24% Similarity=0.305 Sum_probs=122.2
Q ss_pred CCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEe
Q 038149 466 LAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILD 545 (844)
Q Consensus 466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 545 (844)
+.++..+++++|.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 444555666666665332 3555666777777777666 344 56667777777777777765444 66777777777
Q ss_pred cCCCcCcccCCCCCCCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCccccc
Q 038149 546 ISENKLYGPLEFSSNHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGN 625 (844)
Q Consensus 546 ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 625 (844)
+++|++.+..+.. . ++|+.|++++|++++. ..+..+++|++|++++|++++. + .+..+++|++|++++|++++.
T Consensus 92 L~~N~l~~l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 92 VNRNRLKNLNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSCCTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCCcCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 7777776533322 3 7788888888888753 3588889999999999999864 3 688889999999999999866
Q ss_pred CCcccCCCCCCCEEEcCCCccccC
Q 038149 626 IPEPLCHLRKLAIVDISYNTLNGP 649 (844)
Q Consensus 626 ~p~~l~~l~~L~~L~Ls~N~l~~~ 649 (844)
..+..+++|+.|++++|++++.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 6788899999999999998755
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.2e-17 Score=196.74 Aligned_cols=146 Identities=21% Similarity=0.138 Sum_probs=99.9
Q ss_pred CCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccC
Q 038149 506 QLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQ 584 (844)
Q Consensus 506 ~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~ 584 (844)
..|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+ .+++|+.|+|++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34555566666666666666655 44544556666666666666665 444433 5666777777777777 67888899
Q ss_pred CCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCC-CCEEEcCCCccccCCCchhh
Q 038149 585 SSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRK-LAIVDISYNTLNGPIPSCFT 655 (844)
Q Consensus 585 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~ 655 (844)
+++|++|+|++|.++ .+|..|+.+++|++|+|++|++++.+|..+..+.. +..++|++|.++|.+|..+.
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 999999999999997 67888999999999999999999888887755422 22467888888887777553
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=6.1e-16 Score=147.74 Aligned_cols=88 Identities=22% Similarity=0.194 Sum_probs=62.4
Q ss_pred cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccc-cCcccccccCCCEEeCCCCcccccCC---ccccCCCCC
Q 038149 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGS-IPRSFSNLKMTESMDLSYNKLNGQIP---PELGELSFL 780 (844)
Q Consensus 705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~ip---~~l~~l~~L 780 (844)
+++|++|+|++|++++.+|..+..+++|++|+|++|.+++. .+..++.+++|+.|++++|++++..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 44667777777777766677666777777777777777753 22667777778888888887775544 467777888
Q ss_pred CEEEccCCcccc
Q 038149 781 AIFNVSYNNLSG 792 (844)
Q Consensus 781 ~~L~ls~N~l~g 792 (844)
++|++++|.+..
T Consensus 150 ~~L~l~~n~~~~ 161 (168)
T 2ell_A 150 TYLDGYDREDQE 161 (168)
T ss_dssp CEETTEETTSCB
T ss_pred cEecCCCCChhh
Confidence 888888877753
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=8.3e-16 Score=146.82 Aligned_cols=139 Identities=24% Similarity=0.199 Sum_probs=120.5
Q ss_pred CCCCCCEEECCCCcCC-cccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccc
Q 038149 584 QSSQLTTLDLRDNEFS-GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWME 662 (844)
Q Consensus 584 ~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~ 662 (844)
..++|++|++++|+++ +.+|..+..+++|++|++++|++++. ..+..+++|+.|++++|++++.+|..+.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------ 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence 3478999999999998 78888889999999999999999865 78899999999999999999877777655
Q ss_pred cCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCC-CchhhhccccCeEeccCcc
Q 038149 663 KGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDI-PSEIGYLGEIHALNLSNNF 741 (844)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~L~Ls~N~ 741 (844)
+++|++|+|++|++++.. +..++.+++|++|++++|.
T Consensus 94 ------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 94 ------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp ------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred ------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 467899999999999532 2789999999999999999
Q ss_pred cccccC---cccccccCCCEEeCCCCcccccCCcc
Q 038149 742 LSGSIP---RSFSNLKMTESMDLSYNKLNGQIPPE 773 (844)
Q Consensus 742 l~~~ip---~~l~~l~~L~~L~Ls~N~l~~~ip~~ 773 (844)
+++..+ ..+..+++|+.||+++|.+. .+|.+
T Consensus 132 l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 132 VTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp GGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred CcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 996655 48899999999999999987 56654
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=7.2e-16 Score=143.96 Aligned_cols=128 Identities=18% Similarity=0.207 Sum_probs=84.9
Q ss_pred CCCCEEEccCCccc-ccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCcccccccccCCCccccccccccee
Q 038149 610 SNLRALLLRGNNLQ-GNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVE 688 (844)
Q Consensus 610 ~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (844)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------- 62 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-------------------------------- 62 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC--------------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc--------------------------------
Confidence 45666666666665 55666666666666666666666543 22222
Q ss_pred eeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccc-cCcccccccCCCEEeCCCCccc
Q 038149 689 VKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGS-IPRSFSNLKMTESMDLSYNKLN 767 (844)
Q Consensus 689 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~ 767 (844)
+++|++|+|++|++++.+|..++.+++|++|++++|.+++. .|..++.+++|++|++++|+++
T Consensus 63 ----------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 63 ----------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ----------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ----------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 44667777777777766777777777777777777777753 3466777777777777777777
Q ss_pred ccCC---ccccCCCCCCEEEccC
Q 038149 768 GQIP---PELGELSFLAIFNVSY 787 (844)
Q Consensus 768 ~~ip---~~l~~l~~L~~L~ls~ 787 (844)
+..+ ..+..+++|++||+++
T Consensus 127 ~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 127 NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GSTTHHHHHHHHCTTCCEETTBC
T ss_pred chHHHHHHHHHHCCCcccccCCC
Confidence 6555 4677777777777753
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=149.22 Aligned_cols=90 Identities=26% Similarity=0.263 Sum_probs=67.1
Q ss_pred cccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEE
Q 038149 705 LKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFN 784 (844)
Q Consensus 705 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 784 (844)
+++|++|||++|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 34566777777777766666777777788888888888777777778888888888888888765555677788888888
Q ss_pred ccCCcccccC
Q 038149 785 VSYNNLSGTV 794 (844)
Q Consensus 785 ls~N~l~g~i 794 (844)
+++|++.+..
T Consensus 133 L~~N~~~C~c 142 (193)
T 2wfh_A 133 IGANPLYCDC 142 (193)
T ss_dssp CCSSCEECSG
T ss_pred eCCCCeecCC
Confidence 8888877644
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=8e-16 Score=164.42 Aligned_cols=100 Identities=18% Similarity=0.095 Sum_probs=58.9
Q ss_pred CCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCC-EEECCCCcCCcccchhhhCCCCCCEEE
Q 038149 539 EVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLT-TLDLRDNEFSGNIAHLINEDSNLRALL 616 (844)
Q Consensus 539 ~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 616 (844)
++|+.+++++|.+....+..+ .+.+|+.+++.+| ++...+.+|.+|++|+ .+++.+ .++...+.+|.++++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 344444444444333333323 3444444444444 4434455667777777 777766 56655566777777777777
Q ss_pred ccCCcccccCCcccCCCCCCCEEE
Q 038149 617 LRGNNLQGNIPEPLCHLRKLAIVD 640 (844)
Q Consensus 617 L~~N~l~~~~p~~l~~l~~L~~L~ 640 (844)
+++|+++...+.+|.++++|+.++
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eCCCccCccchhhhcCCcchhhhc
Confidence 777777766666777777777765
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.1e-15 Score=142.65 Aligned_cols=128 Identities=22% Similarity=0.206 Sum_probs=102.1
Q ss_pred CCCCEEECCCCcCC-cccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccC
Q 038149 586 SQLTTLDLRDNEFS-GNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKG 664 (844)
Q Consensus 586 ~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~ 664 (844)
++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------- 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------- 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence 56777888888777 66777777788888888888888755 67788888888888888888777766654
Q ss_pred cccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCC-CCchhhhccccCeEeccCcccc
Q 038149 665 NYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGD-IPSEIGYLGEIHALNLSNNFLS 743 (844)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~ 743 (844)
+++|++|++++|++++. .|..++.+++|++|++++|.++
T Consensus 87 ----------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 87 ----------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ----------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ----------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 45788899999998863 3478889999999999999998
Q ss_pred cccC---cccccccCCCEEeCCC
Q 038149 744 GSIP---RSFSNLKMTESMDLSY 763 (844)
Q Consensus 744 ~~ip---~~l~~l~~L~~L~Ls~ 763 (844)
+..+ ..++.+++|+.||+++
T Consensus 127 ~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 127 NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GSTTHHHHHHHHCTTCCEETTBC
T ss_pred chHHHHHHHHHHCCCcccccCCC
Confidence 7665 5788999999999874
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=5.1e-15 Score=142.61 Aligned_cols=91 Identities=21% Similarity=0.204 Sum_probs=65.9
Q ss_pred ccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEc
Q 038149 706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNV 785 (844)
Q Consensus 706 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l 785 (844)
++|++|++++|++++..+..++.+++|++|+|++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 45666667767666555555677777777788877777666666777888888888888887655555677888888888
Q ss_pred cCCcccccCCC
Q 038149 786 SYNNLSGTVPN 796 (844)
Q Consensus 786 s~N~l~g~ip~ 796 (844)
++|++.|.+|.
T Consensus 132 ~~N~~~~~~~~ 142 (177)
T 2o6r_A 132 HTNPWDCSCPR 142 (177)
T ss_dssp CSSCBCCCHHH
T ss_pred cCCCeeccCcc
Confidence 88888876663
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=2.6e-15 Score=160.46 Aligned_cols=258 Identities=12% Similarity=0.011 Sum_probs=153.5
Q ss_pred CCCccEEEccCCcCC--CCCCccccccccCcEEeccCCcCCCCCChhhhhc--------CCCCcEEeCcCcccCCcCCcc
Q 038149 393 LPELVYLDMSQNSFE--GSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTS--------CVSLEFMNLSHNYFDGQIFPK 462 (844)
Q Consensus 393 l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~ 462 (844)
+++|++|||++|++. ..... .++.++.+.+..| .+|...|.+ |++|+.+++.+ .++.+...+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 556666666666665 11111 1122333444443 344445555 66777777766 666555566
Q ss_pred ccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcc----cCcCCChhhhcCCCCC-EEeCCCCccc-ccCCcccc
Q 038149 463 YMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNM----LSGQLPRWIGKFSNLD-VLLMSRNSFE-GDVSVQLS 536 (844)
Q Consensus 463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~----l~~~~p~~l~~l~~L~-~L~ls~n~l~-~~~~~~l~ 536 (844)
|.+|++|+.+++.+|.+....+..|..+.++..+....+. ....-...|.++..|+ .+.+....-. ......-.
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 6667777777777766665556666666666655554421 1222233455555555 3444322110 00000011
Q ss_pred CCCCCCEEecCCCcCcccCCCCC-CCCCCcEEECCCCccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCC-E
Q 038149 537 NLEVARILDISENKLYGPLEFSS-NHSSLRYLFPHNNSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLR-A 614 (844)
Q Consensus 537 ~l~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~ 614 (844)
...+++.+.+.++-......... .+++|+.+++++|+++...+.+|.+|++|+.+++.+| ++...+.+|.++++|+ .
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 23445555555432111111111 3678888888888888666777888888888888887 7766677888888888 8
Q ss_pred EEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccc
Q 038149 615 LLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLW 660 (844)
Q Consensus 615 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~ 660 (844)
+++.+ +++..-+.+|.++++|+.++++.|+++..-+.+|.++..+
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 88888 6765667888888888888888888886666677776543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=141.90 Aligned_cols=128 Identities=23% Similarity=0.313 Sum_probs=112.8
Q ss_pred eeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccccc
Q 038149 690 KFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQ 769 (844)
Q Consensus 690 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 769 (844)
..++.+.+..++....+.+++|+|++|+++ .+|..+..+++|++|+|++|.|++..|..|.++++|++|+|++|+|++.
T Consensus 15 l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93 (193)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred EEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence 344556666666666778999999999999 8899999999999999999999988888999999999999999999998
Q ss_pred CCccccCCCCCCEEEccCCcccccCCCC-CcCCCcCccccCCCCCCcCcc
Q 038149 770 IPPELGELSFLAIFNVSYNNLSGTVPNK-GQFANFDESNYRGNPYLCGPA 818 (844)
Q Consensus 770 ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lc~~~ 818 (844)
.|..|..+++|++|++++|++++..+.. ..+..+..+.+.|||..|++.
T Consensus 94 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 8889999999999999999999765543 567788889999999999765
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=1.6e-13 Score=150.35 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=40.3
Q ss_pred ccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCC
Q 038149 87 IINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGN 159 (844)
Q Consensus 87 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 159 (844)
.+...+|.++++|+.+++..+ ++.+.. .+|.++++|+.+++..+ ++.+...+|.++++|+.+.+..+
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~----~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGE----FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECT----TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcch----hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence 345566777777777777633 555444 45666777777777543 44445555666666666555443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=1.7e-14 Score=138.87 Aligned_cols=133 Identities=22% Similarity=0.204 Sum_probs=92.9
Q ss_pred CCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhccccccccCccc
Q 038149 588 LTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISLWMEKGNYY 667 (844)
Q Consensus 588 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~~~~~~ 667 (844)
.+.+++++|+++. +|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 74 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK----------- 74 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence 3556666666663 33322 256777777777777555556677777777777777777544444443
Q ss_pred ccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccC
Q 038149 668 NSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIP 747 (844)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip 747 (844)
+++|++|+|++|++++..+..+..+++|++|++++|++++..+
T Consensus 75 -------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 117 (177)
T 2o6r_A 75 -------------------------------------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117 (177)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -------------------------------------CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence 4567778888888886666667788888888888888886655
Q ss_pred cccccccCCCEEeCCCCcccccCC
Q 038149 748 RSFSNLKMTESMDLSYNKLNGQIP 771 (844)
Q Consensus 748 ~~l~~l~~L~~L~Ls~N~l~~~ip 771 (844)
..+..+++|+.|+|++|.+++..|
T Consensus 118 ~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 118 GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcCCcccCEEEecCCCeeccCc
Confidence 567788888888888888886554
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=1.8e-16 Score=155.94 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=117.5
Q ss_pred ccCCCCCCEEECCCCcCCcccch------hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhh
Q 038149 582 LLQSSQLTTLDLRDNEFSGNIAH------LINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFT 655 (844)
Q Consensus 582 l~~l~~L~~L~Ls~N~l~~~~~~------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 655 (844)
+.....++.++++.+.+++.+|. .+..+++|++|++++|++++ +| .+..+++|+.|++++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44455666667777777666665 78888888888888888885 66 7888888888888888887 5565443
Q ss_pred ccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeE
Q 038149 656 NISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHAL 735 (844)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 735 (844)
. +++|++|+|++|++++ +| .++.+++|++|
T Consensus 91 ~------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 91 V------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVL 120 (198)
T ss_dssp H------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred c------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence 3 3578888899988885 55 68888889999
Q ss_pred eccCcccccccC-cccccccCCCEEeCCCCcccccCCcc----------ccCCCCCCEEEccCCccc
Q 038149 736 NLSNNFLSGSIP-RSFSNLKMTESMDLSYNKLNGQIPPE----------LGELSFLAIFNVSYNNLS 791 (844)
Q Consensus 736 ~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~ 791 (844)
++++|++++..+ ..+..+++|++|++++|.+++.+|.. +..+++|++|| +|.++
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 999998885332 46888888889999988888777653 77888888887 55554
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=2.6e-13 Score=148.75 Aligned_cols=335 Identities=12% Similarity=0.079 Sum_probs=181.6
Q ss_pred CCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCC
Q 038149 137 FNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLL 216 (844)
Q Consensus 137 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 216 (844)
++.+...+|.++++|+.+.+..+ ++. +...+|.+|++|+.+++..+ ++ .+...+|.++.+|+.+.+..+ +....
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~--I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VRE--IGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCE--ECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccC--cchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeec
Confidence 44566677888888888888754 433 56677888888888888654 44 555667777888877766644 44445
Q ss_pred cccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCCCCC
Q 038149 217 PQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPWLPK 296 (844)
Q Consensus 217 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~ 296 (844)
..+|.++..++....... . .+...+|.++++|+.+.+..+.. .++...+.++.+|+.+.+..+
T Consensus 133 ~~aF~~~~~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~------------ 195 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGV--T-VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN------------ 195 (394)
T ss_dssp TTTTTTCCCSEEECCTTC--C-EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT------------
T ss_pred ceeeecccccccccCccc--c-ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC------------
Confidence 556666654333332222 2 33345677777777777765431 244445666666665544332
Q ss_pred CcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCEEEc
Q 038149 297 FQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPHLVI 376 (844)
Q Consensus 297 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 376 (844)
+......+|..+..|+.+.+..+... +....+ ... +|+.+.+
T Consensus 196 ------------~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~-~~~-----------------------~l~~i~i 237 (394)
T 4fs7_A 196 ------------LKIIRDYCFAECILLENMEFPNSLYY--LGDFAL-SKT-----------------------GVKNIII 237 (394)
T ss_dssp ------------CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTT-TTC-----------------------CCCEEEE
T ss_pred ------------ceEeCchhhccccccceeecCCCceE--eehhhc-ccC-----------------------CCceEEE
Confidence 22222334455555555554443221 111111 223 3333333
Q ss_pred cCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccC
Q 038149 377 SNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFD 456 (844)
Q Consensus 377 ~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 456 (844)
.... ..+....+..+..++.+.+..+... .....+..+..++.+....+. ++...+..+.+|+.+.+..+ +.
T Consensus 238 p~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~ 309 (394)
T 4fs7_A 238 PDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VK 309 (394)
T ss_dssp CTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CC
T ss_pred CCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccccc-cc
Confidence 3221 1222233333555555555554332 334455556666665554432 23334556666666666543 44
Q ss_pred CcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCcccc
Q 038149 457 GQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLS 536 (844)
Q Consensus 457 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~ 536 (844)
.+...+|.++.+|+.+++.++ ++.....+|.++++|+.+++..+ ++.+-..+|.+|.+|+.+++..+- . .+...|.
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~ 385 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFE 385 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBC
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-Ehhheec
Confidence 444455666666666666543 44444556666777777777655 554455667777777777775542 2 2234566
Q ss_pred CCCCCCEE
Q 038149 537 NLEVARIL 544 (844)
Q Consensus 537 ~l~~L~~L 544 (844)
++++|+.+
T Consensus 386 ~c~~L~~I 393 (394)
T 4fs7_A 386 DTTKFKWI 393 (394)
T ss_dssp TTCEEEEE
T ss_pred CCCCCcEE
Confidence 66666553
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=2.6e-13 Score=147.92 Aligned_cols=253 Identities=10% Similarity=0.090 Sum_probs=116.6
Q ss_pred CCcccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCC
Q 038149 84 GFPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSE 163 (844)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 163 (844)
++..+...+|.+. +|+.+++..+ +..+.. .+|.++ +|+.+.+.. .+..+...+|.++++|+.+++++|.++.
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~----~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~ 194 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGD----MAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK 194 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECT----TTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE
T ss_pred ccCEehHhhcccC-CccEEEeCCC-ccEECH----HhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE
Confidence 3334444455543 4555555443 443333 233332 355555543 4444444555555555555555555433
Q ss_pred CCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChh
Q 038149 164 GFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLS 243 (844)
Q Consensus 164 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 243 (844)
++...|. +.+|+.+.+..+ ++ .+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++ .++..
T Consensus 195 --I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~ 265 (401)
T 4fdw_A 195 --LPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-NIASR 265 (401)
T ss_dssp --ECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-EECTT
T ss_pred --echhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-EEChh
Confidence 3433443 355555555432 33 344445555555555555543 33334444444 455555552 3333 44444
Q ss_pred hhcCCCCCCeEecCCCccc----CccChhhhcCCCCCCEEEccCccccCCCCCCCCCCcccEEEccCCCCCcCcChhhhc
Q 038149 244 VIANLTSLEYLSLFDNHFQ----ESFPLSVLANHSRLEVFQLSRLQVETENFPWLPKFQLKVLNLRHCNISGTIPRFLQY 319 (844)
Q Consensus 244 ~l~~l~~L~~L~L~~n~l~----~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 319 (844)
+|.++++|+.+++.++.+. ..++...|.++++|+. +.+. +.+......+|..
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~-----------------------l~l~-~~i~~I~~~aF~~ 321 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR-----------------------FEIP-ESIRILGQGLLGG 321 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE-----------------------ECCC-TTCCEECTTTTTT
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe-----------------------EEeC-CceEEEhhhhhcC
Confidence 5555555555555544332 1133344444555544 4444 2244444455555
Q ss_pred CCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCccccccc-CCCCC-CCCCEEEccCCc
Q 038149 320 QYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQ-LPNSK-RNLPHLVISNNS 380 (844)
Q Consensus 320 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~-~~L~~L~l~~n~ 380 (844)
+++|+.+++..+ ++ .+....+.++ +|+.+.+.+|....... .+..+ .+++.|.+..+.
T Consensus 322 c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 322 NRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 555555555433 32 2222223344 55555555554433211 11223 356667666554
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.9e-14 Score=137.07 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=41.2
Q ss_pred cceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCc--ccccccCCCEEeCCCCcccccCCcc----ccCCCCC
Q 038149 707 YMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPR--SFSNLKMTESMDLSYNKLNGQIPPE----LGELSFL 780 (844)
Q Consensus 707 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~L~Ls~N~l~~~ip~~----l~~l~~L 780 (844)
+|++|+|++|++++..|..++.+++|++|+|++|+++ .+|. .++.+++|+.|++++|.++ .+|.. +..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 3444444444444322222345555555555555553 3343 4555555555555555555 33442 5555566
Q ss_pred CEEEccCCccc
Q 038149 781 AIFNVSYNNLS 791 (844)
Q Consensus 781 ~~L~ls~N~l~ 791 (844)
++||+++|...
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 66666655544
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=1.4e-12 Score=142.24 Aligned_cols=241 Identities=13% Similarity=0.092 Sum_probs=134.1
Q ss_pred CCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCccccCCCCCCEEecCCCcCcccCCCCCCCCCCcEEECCC
Q 038149 492 SLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSVQLSNLEVARILDISENKLYGPLEFSSNHSSLRYLFPHN 571 (844)
Q Consensus 492 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~ 571 (844)
+|+.+++..+ ++.+-..+|.++ +|+.+.+.+ .+....+.+|.+|++|+.+++++|.+.......+.+.+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 3444444333 332333334442 344444443 3333334445555555555555555444333334445556666553
Q ss_pred CccccccCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCcccc---
Q 038149 572 NSLSGTIPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNG--- 648 (844)
Q Consensus 572 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--- 648 (844)
+ ++.....+|.+|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++..-+.+|.++++|+.+++.+|.+..
T Consensus 213 ~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~ 288 (401)
T 4fdw_A 213 T-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPE 288 (401)
T ss_dssp T-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred c-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence 3 44455566777777777777764 44444555655 677777773 44554556677777777777777765531
Q ss_pred --CCCchhhccccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCchh
Q 038149 649 --PIPSCFTNISLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEI 726 (844)
Q Consensus 649 --~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 726 (844)
.-+.+|.+ +++|+.++|. +.++..-...|
T Consensus 289 ~~I~~~aF~~------------------------------------------------c~~L~~l~l~-~~i~~I~~~aF 319 (401)
T 4fdw_A 289 AMIHPYCLEG------------------------------------------------CPKLARFEIP-ESIRILGQGLL 319 (401)
T ss_dssp CEECTTTTTT------------------------------------------------CTTCCEECCC-TTCCEECTTTT
T ss_pred cEECHHHhhC------------------------------------------------CccCCeEEeC-CceEEEhhhhh
Confidence 11112222 4456666666 34553444566
Q ss_pred hhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCC-CCCEEEccCCcc
Q 038149 727 GYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS-FLAIFNVSYNNL 790 (844)
Q Consensus 727 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l 790 (844)
.++++|+.++|..| ++..-+.+|.++ +|+.+++++|.+....+..|..++ .++.+.+..+.+
T Consensus 320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 77777777777544 555556667777 777777777777655555666663 566666665543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4.3e-14 Score=135.91 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=114.9
Q ss_pred ccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcccc
Q 038149 580 NALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNISL 659 (844)
Q Consensus 580 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 659 (844)
..+..+.+|++|++++|+++. +|......++|++|++++|++++. ..+..+++|+.|++++|++++..|..+..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~--- 86 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA--- 86 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH---
T ss_pred HhcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc---
Confidence 346778999999999999995 465444445999999999999975 68899999999999999998654454454
Q ss_pred ccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCCc--hhhhccccCeEec
Q 038149 660 WMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPS--EIGYLGEIHALNL 737 (844)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~L 737 (844)
+++|++|+|++|+++ .+|. .++.+++|+.|++
T Consensus 87 ---------------------------------------------l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 87 ---------------------------------------------LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp ---------------------------------------------CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEEC
T ss_pred ---------------------------------------------CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEe
Confidence 568899999999997 6776 8899999999999
Q ss_pred cCcccccccCcc----cccccCCCEEeCCCCcccc
Q 038149 738 SNNFLSGSIPRS----FSNLKMTESMDLSYNKLNG 768 (844)
Q Consensus 738 s~N~l~~~ip~~----l~~l~~L~~L~Ls~N~l~~ 768 (844)
++|.++ .+|.. ++.+++|+.||+++|.+..
T Consensus 121 ~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 121 LRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999998 56764 8999999999999998764
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=8.5e-16 Score=151.04 Aligned_cols=136 Identities=21% Similarity=0.210 Sum_probs=114.7
Q ss_pred cCccccCCCCCCEEECCCCcCCcccchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcCCCccccCCCchhhcc
Q 038149 578 IPNALLQSSQLTTLDLRDNEFSGNIAHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLAIVDISYNTLNGPIPSCFTNI 657 (844)
Q Consensus 578 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 657 (844)
+|..+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ +| .+..
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~- 113 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK- 113 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH-
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc-
Confidence 44488999999999999999996 66 8889999999999999998 678888888999999999999985 34 3433
Q ss_pred ccccccCcccccccccCCCcccccccccceeeeeeeccccccccccccccceEEEeecCcccCCCC-chhhhccccCeEe
Q 038149 658 SLWMEKGNYYNSTLSLALPAEDNRESSQRVEVKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIP-SEIGYLGEIHALN 736 (844)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ 736 (844)
+++|++|++++|++++..+ ..+..+++|++|+
T Consensus 114 -----------------------------------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 114 -----------------------------------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp -----------------------------------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred -----------------------------------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 5678999999999995322 4789999999999
Q ss_pred ccCcccccccCcc----------cccccCCCEEeCCCCcccc
Q 038149 737 LSNNFLSGSIPRS----------FSNLKMTESMDLSYNKLNG 768 (844)
Q Consensus 737 Ls~N~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~~ 768 (844)
+++|.+++.+|.. +..+++|+.|| +|.++.
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999999887764 88999999998 677663
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=2.5e-13 Score=129.49 Aligned_cols=92 Identities=21% Similarity=0.175 Sum_probs=84.3
Q ss_pred ccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEc
Q 038149 706 KYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNV 785 (844)
Q Consensus 706 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l 785 (844)
+.+++|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 46789999999999888999999999999999999999877778899999999999999999877778999999999999
Q ss_pred cCCcccccCCCC
Q 038149 786 SYNNLSGTVPNK 797 (844)
Q Consensus 786 s~N~l~g~ip~~ 797 (844)
++|++++..+..
T Consensus 110 ~~N~~~c~c~~l 121 (170)
T 3g39_A 110 LNNPWDCACSDI 121 (170)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCCCCCchhH
Confidence 999999877643
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=8.5e-13 Score=125.75 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=97.0
Q ss_pred ceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccC
Q 038149 708 MTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSY 787 (844)
Q Consensus 708 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 787 (844)
.+.+|+++|+++ .+|..+. +.|++|+|++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 468999999999 6887764 8999999999999998899999999999999999999987777889999999999999
Q ss_pred CcccccCCC-CCcCCCcCccccCCCCCCcCcc
Q 038149 788 NNLSGTVPN-KGQFANFDESNYRGNPYLCGPA 818 (844)
Q Consensus 788 N~l~g~ip~-~~~~~~~~~~~~~gn~~lc~~~ 818 (844)
|++++..|. -..+..+..+.+.+||..|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999987775 3677888899999999999864
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=1.7e-12 Score=124.07 Aligned_cols=107 Identities=19% Similarity=0.148 Sum_probs=89.1
Q ss_pred eeeeeccccccccccccccceEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccc
Q 038149 689 VKFMAKNRYESYKGDVLKYMTGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNG 768 (844)
Q Consensus 689 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 768 (844)
...++++.+..++....+.|+.|+|++|++++..|..|+.+++|++|+|++|+|++..+..|+++++|+.|||++|+|++
T Consensus 16 ~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~ 95 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95 (174)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce
Confidence 45566777777777777889999999999998888889999999999999999997666667889999999999999996
Q ss_pred cCCccccCCCCCCEEEccCCcccccCC
Q 038149 769 QIPPELGELSFLAIFNVSYNNLSGTVP 795 (844)
Q Consensus 769 ~ip~~l~~l~~L~~L~ls~N~l~g~ip 795 (844)
..+..+..+++|++|++++|++.+..+
T Consensus 96 l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 96 IPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred eCHHHhccccCCCEEEeCCCCcccccc
Confidence 666668889999999999999887654
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=1.7e-12 Score=124.13 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=95.9
Q ss_pred eEEEeecCcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCC
Q 038149 709 TGLDLSSNELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYN 788 (844)
Q Consensus 709 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 788 (844)
+.+++++|+++ .+|..+. +.|++|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67999999997 8888775 89999999999999999999999999999999999999866667899999999999999
Q ss_pred cccccCCC-CCcCCCcCccccCCCCCCcCcc
Q 038149 789 NLSGTVPN-KGQFANFDESNYRGNPYLCGPA 818 (844)
Q Consensus 789 ~l~g~ip~-~~~~~~~~~~~~~gn~~lc~~~ 818 (844)
++++..|. -..+..+..+.+.||+.-|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99976665 3667888899999999998764
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.33 E-value=1e-10 Score=128.01 Aligned_cols=334 Identities=10% Similarity=0.120 Sum_probs=158.3
Q ss_pred CCCchhhhcCCC-CCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCc---CCCCCcccccCCCCCCcEEEccCCcCC
Q 038149 138 NESLVPLLTSLT-SLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNR---ITGSLIMQGICDLKNLVELNINENEFD 213 (844)
Q Consensus 138 ~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~~l~~l~~L~~L~L~~n~l~ 213 (844)
+.+...+|.+++ .|+.+.+..+ ++. +...+|.+|++|+.+.+..|. ++ .+...+|.++.+|+.+.+..+ ++
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~--Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTE--IGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCE--ECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CS
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeE--EhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cc
Confidence 345556777774 5888888754 333 556677888888888777653 43 455566777777777766544 44
Q ss_pred cCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEccCccccCCCCCC
Q 038149 214 GLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLSRLQVETENFPW 293 (844)
Q Consensus 214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~ 293 (844)
.+...+|..+.+|+.+.+..+ +. .++...|..+.+|+.+.+..+- . .+....+.. .
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF~~-~------------------- 182 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDSV-T-AIEERAFTG-T------------------- 182 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTTC-C-EECTTTTTT-C-------------------
T ss_pred eehhhhhhhhcccccccccce-ee-eecccceeccccccccccccee-e-Eeccccccc-c-------------------
Confidence 445566677777777777543 22 4454566666667666665431 1 122222222 2
Q ss_pred CCCCcccEEEccCCCCCcCcChhhhcCCCCCEEEccCCcccccCchhHhhcCCCCcEEEcCCCcccccccCCCCCCCCCE
Q 038149 294 LPKFQLKVLNLRHCNISGTIPRFLQYQYDFRYIDLSDNNLVDTFPTWLLQNNTKLEIMFLFNNFLTGNLQLPNSKRNLPH 373 (844)
Q Consensus 294 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 373 (844)
.|+.+.+..+ +......+|..+..++........... ....++........... .......+..
T Consensus 183 ----~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 246 (394)
T 4gt6_A 183 ----ALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALI----------RYPSQREDPA 246 (394)
T ss_dssp ----CCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEE----------ECCTTCCCSE
T ss_pred ----ceeEEEECCc-ccccccchhhhccccceeccccccccc-ccceeeccccccccccc----------ccccccccce
Confidence 3444444332 122333455555566655554433221 11111100000000000 0001111222
Q ss_pred EEccCCcccccCChhhhcCCCCccEEEccCCcCCCCCCccccccccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCc
Q 038149 374 LVISNNSFIGKLPENFGLILPELVYLDMSQNSFEGSIPPSMGYMERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHN 453 (844)
Q Consensus 374 L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 453 (844)
+.+.. .++..-..+|.++..|+.+.+..+.. .+....|.++++|+.+.+. +
T Consensus 247 ~~ip~--------------------------~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~ 297 (394)
T 4gt6_A 247 FKIPN--------------------------GVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-S 297 (394)
T ss_dssp EECCT--------------------------TEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-T
T ss_pred EEcCC--------------------------cceEcccceeeecccccEEecccccc--eecCcccccccccccccCC-C
Confidence 22211 11111223444445555555543332 2334444555555555553 2
Q ss_pred ccCCcCCccccCCCCcCEecCCCCcCcccccccccCCCCCcEEEccCcccCcCCChhhhcCCCCCEEeCCCCcccccCCc
Q 038149 454 YFDGQIFPKYMNLAKLVFLFLNDNQFTGRLEVGLLNASSLYVLDVSNNMLSGQLPRWIGKFSNLDVLLMSRNSFEGDVSV 533 (844)
Q Consensus 454 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~ 533 (844)
.+..+....|.+|.+|+.+.+..+ ++.+...+|.++++|+.+.+..+ ++.+-..+|.+|++|+.+++.++.... .
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~ 372 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---N 372 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---H
T ss_pred cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---h
Confidence 333333445555555666555543 33344455666666666666443 443444566666666666666654321 2
Q ss_pred cccCCCCCCEEecCCCc
Q 038149 534 QLSNLEVARILDISENK 550 (844)
Q Consensus 534 ~l~~l~~L~~L~ls~n~ 550 (844)
.+..+.+|+.+.+..+.
T Consensus 373 ~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 373 AISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCBCCCCC---------
T ss_pred hhhccCCCCEEEeCCCC
Confidence 34555666666655443
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.29 E-value=3e-10 Score=124.23 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=117.9
Q ss_pred cccCCCC-CCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCC---CCCCCcCcccccCCCCCCEEEccCCcCCCCCccc
Q 038149 119 NTSRSLK-QLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNS---FSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQ 194 (844)
Q Consensus 119 ~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 194 (844)
.+|.+++ .|+.+.+.. .++.+...+|.++++|+.+.+..+. ++. +...+|.++.+|+.+.+..+ ++ .+...
T Consensus 57 ~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~--Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~ 131 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKK--IGRQAFMFCSELTDIPILDS-VT-EIDSE 131 (394)
T ss_dssp TTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCE--ECTTTTTTCTTCCBCGGGTT-CS-EECTT
T ss_pred hhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeE--echhhchhcccceeeccCCc-cc-eehhh
Confidence 5677775 599999975 4778888999999999999998764 433 56678999999999988765 43 56677
Q ss_pred ccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCC
Q 038149 195 GICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHS 274 (844)
Q Consensus 195 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 274 (844)
.|..+.+|+.+.+..+ +..+...+|..+..|+.+.+..+ ++ .+....|.. .+|+.+.+..+.. .+....+..+.
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af~~c~ 205 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAKVT--RIGTNAFSECF 205 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTTCC--EECTTTTTTCT
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCccc--ccccchhhhcc
Confidence 8999999999999754 44466778999999999999765 44 566566654 6799998876532 23335577777
Q ss_pred CCCEEEccCcc
Q 038149 275 RLEVFQLSRLQ 285 (844)
Q Consensus 275 ~L~~L~l~~~~ 285 (844)
.++........
T Consensus 206 ~l~~~~~~~~~ 216 (394)
T 4gt6_A 206 ALSTITSDSES 216 (394)
T ss_dssp TCCEEEECCSS
T ss_pred ccceecccccc
Confidence 77776655443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=3.3e-13 Score=145.66 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=37.3
Q ss_pred ccceEEEeecCcccC----CCCchhhhccccCeEeccCcccccc----cCcccccccCCCEEeCCCCcccccCCccc
Q 038149 706 KYMTGLDLSSNELTG----DIPSEIGYLGEIHALNLSNNFLSGS----IPRSFSNLKMTESMDLSYNKLNGQIPPEL 774 (844)
Q Consensus 706 ~~L~~LdLs~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 774 (844)
++|++|||++|.+++ .++..+...+.|++|+|++|.|+.. ++..+...++|++|||++|.|+..-...+
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 345566666666553 1234445555666666666666542 33334445666666666666654443333
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=2.3e-11 Score=130.91 Aligned_cols=88 Identities=23% Similarity=0.216 Sum_probs=53.5
Q ss_pred cccceEEEeec-CcccCCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEE
Q 038149 705 LKYMTGLDLSS-NELTGDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIF 783 (844)
Q Consensus 705 l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 783 (844)
+++|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|++..|..|++|++|+.|||++|+|++..|..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34466666664 666655555666666666666666666666666666666666666666666654444444444 6666
Q ss_pred EccCCccccc
Q 038149 784 NVSYNNLSGT 793 (844)
Q Consensus 784 ~ls~N~l~g~ 793 (844)
++.+|++.+.
T Consensus 109 ~l~~N~~~c~ 118 (347)
T 2ifg_A 109 VLSGNPLHCS 118 (347)
T ss_dssp ECCSSCCCCC
T ss_pred EeeCCCccCC
Confidence 6666666543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=2.4e-11 Score=130.78 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=93.0
Q ss_pred EEEeecC-cccCCCCchhhhccccCeEeccC-cccccccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccC
Q 038149 710 GLDLSSN-ELTGDIPSEIGYLGEIHALNLSN-NFLSGSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSY 787 (844)
Q Consensus 710 ~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 787 (844)
.++.+++ +|+ .+|. +..+++|+.|+|++ |+|++..|..|++|++|+.|||++|+|++..|..|..|++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4788888 888 6888 99999999999996 999988888999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCcCCCcCccccCCCCCCcCcc
Q 038149 788 NNLSGTVPNKGQFANFDESNYRGNPYLCGPA 818 (844)
Q Consensus 788 N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~ 818 (844)
|+|++..|.......+..+.+.+|+.-|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 9999766654333347888899999988764
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=2.8e-12 Score=138.39 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=59.0
Q ss_pred CCccEEEccCCcCCCCCCcccccc-----ccCcEEeccCCcCCCCCChhhhhcCCCCcEEeCcCcccCCcCCccc-----
Q 038149 394 PELVYLDMSQNSFEGSIPPSMGYM-----ERLLFLDLSSNNFSRDLPKHFLTSCVSLEFMNLSHNYFDGQIFPKY----- 463 (844)
Q Consensus 394 ~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----- 463 (844)
+.|++|++++|.++......+... ++|++|+|++|.++......+...+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 445555555555543222222211 4555555555555432222233333445555555555543222221
Q ss_pred cCCCCcCEecCCCCcCccc----ccccccCCCCCcEEEccCcccCcC----CChhhhcCCCCCEEeCCCCccc
Q 038149 464 MNLAKLVFLFLNDNQFTGR----LEVGLLNASSLYVLDVSNNMLSGQ----LPRWIGKFSNLDVLLMSRNSFE 528 (844)
Q Consensus 464 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~ 528 (844)
...+.|++|+|++|.++.. ++..+...++|++|++++|.+++. ++..+...++|++|++++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 1234455555555555421 222233445555555555555431 1233344445555555555544
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.96 E-value=3.5e-08 Score=107.22 Aligned_cols=82 Identities=9% Similarity=0.097 Sum_probs=48.8
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCcccccCCCCCCEEECcCCCCCCCCChhhhcCCCC
Q 038149 171 LVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLSNLTYLRVLDLSSNKLSGNLPLSVIANLTS 250 (844)
Q Consensus 171 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~ 250 (844)
+....+|+.+.+... ++ .|...+|.+|.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++ .++..+|... +
T Consensus 42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-D 114 (379)
T ss_dssp GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-C
T ss_pred cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-C
Confidence 445567777777643 33 555666777777777777643 555555666665 5666665433 33 4554455443 5
Q ss_pred CCeEecCCC
Q 038149 251 LEYLSLFDN 259 (844)
Q Consensus 251 L~~L~L~~n 259 (844)
|+.+.+..+
T Consensus 115 L~~i~lp~~ 123 (379)
T 4h09_A 115 LDDFEFPGA 123 (379)
T ss_dssp CSEEECCTT
T ss_pred cccccCCCc
Confidence 666666543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.91 E-value=1.1e-07 Score=103.17 Aligned_cols=128 Identities=10% Similarity=0.123 Sum_probs=81.7
Q ss_pred hhhhcCCCCCCEEECCCCCCCCCCcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCccccc
Q 038149 142 VPLLTSLTSLTSLFLQGNSFSEGFKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLPQCLS 221 (844)
Q Consensus 142 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 221 (844)
.+++....+|+.+.+... +++ ++..+|.+|.+|+.++|..+ ++ .+...+|.++ +|+.+.+..+ +..+...+|.
T Consensus 39 ~~~~~~~~~i~~v~ip~~-vt~--Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~ 111 (379)
T 4h09_A 39 IPWYKDRDRISEVRVNSG-ITS--IGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ 111 (379)
T ss_dssp STTGGGGGGCSEEEECTT-EEE--ECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTT
T ss_pred ccccccccCCEEEEeCCC-ccC--hHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceec
Confidence 355777788999998764 323 66788999999999999754 55 6777788887 6888887654 5545556676
Q ss_pred CCCCCCEEECcCCCCCCCCChhhhcCCCCCCeEecCCCcccCccChhhhcCCCCCCEEEcc
Q 038149 222 NLTYLRVLDLSSNKLSGNLPLSVIANLTSLEYLSLFDNHFQESFPLSVLANHSRLEVFQLS 282 (844)
Q Consensus 222 ~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 282 (844)
.+ +|+.+.+..+- + .+....|.++ +|+...+..+- + .+....+..+..++...+.
T Consensus 112 ~~-~L~~i~lp~~~-~-~i~~~~F~~~-~l~~~~~~~~v-~-~i~~~~f~~~~~l~~~~~~ 166 (379)
T 4h09_A 112 GT-DLDDFEFPGAT-T-EIGNYIFYNS-SVKRIVIPKSV-T-TIKDGIGYKAENLEKIEVS 166 (379)
T ss_dssp TC-CCSEEECCTTC-C-EECTTTTTTC-CCCEEEECTTC-C-EECSCTTTTCTTCCEEEEC
T ss_pred cC-CcccccCCCcc-c-cccccccccc-eeeeeecccee-e-ccccchhcccccccccccc
Confidence 54 79999987653 3 4443455554 46555554331 1 1222334555555554443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=3.9e-09 Score=112.70 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=33.7
Q ss_pred cccceEEEeecCcccCCCCchhh---hccccCeEeccCcccccc----cCcccccccCCCEEeCCCCcccc
Q 038149 705 LKYMTGLDLSSNELTGDIPSEIG---YLGEIHALNLSNNFLSGS----IPRSFSNLKMTESMDLSYNKLNG 768 (844)
Q Consensus 705 l~~L~~LdLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~ 768 (844)
+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 45566666666665543333332 345566666666665542 33333455566666666665553
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=4.4e-09 Score=112.27 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=20.2
Q ss_pred cccceEEEeecCcccCC----CCchhhhccccCeEeccCccccc
Q 038149 705 LKYMTGLDLSSNELTGD----IPSEIGYLGEIHALNLSNNFLSG 744 (844)
Q Consensus 705 l~~L~~LdLs~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~~ 744 (844)
++.|++|||+.|.+++. ++..+..+++|+.|+|++|.++.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 34555555555555542 23333445555555555555543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.62 E-value=2e-09 Score=108.71 Aligned_cols=83 Identities=25% Similarity=0.257 Sum_probs=47.1
Q ss_pred cCCCCCCEEECCCCCCCCC-CcCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCcEEEccCCcCCcCCc-------
Q 038149 146 TSLTSLTSLFLQGNSFSEG-FKHNKGLVNLRNLEVLDLSGNRITGSLIMQGICDLKNLVELNINENEFDGLLP------- 217 (844)
Q Consensus 146 ~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~------- 217 (844)
.++++|++|+|++|.++.. .++ ..+..+++|++|+|++|++++.-....+..+ +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 4456666666666666331 111 2344666677777777766632122223333 77777777777765444
Q ss_pred ccccCCCCCCEEE
Q 038149 218 QCLSNLTYLRVLD 230 (844)
Q Consensus 218 ~~l~~l~~L~~L~ 230 (844)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2356677787776
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=3.9e-08 Score=94.57 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=58.4
Q ss_pred ccCCCCCcEEeCCCC-CCCCCCccccccccCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEECCCCCCCCCCcCcccc
Q 038149 93 FVPFQELHVLDLSDN-RFEGWEENKAYNTSRSLKQLKILNIGYNSFNESLVPLLTSLTSLTSLFLQGNSFSEGFKHNKGL 171 (844)
Q Consensus 93 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l 171 (844)
+...+.|++|+|++| .+.......+...+...++|++|+|++|.+.......++ ..+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~----------------------~~L 89 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA----------------------EML 89 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH----------------------HHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH----------------------HHH
Confidence 344555666666665 554433222333444555555555555555432211111 122
Q ss_pred cCCCCCCEEEccCCcCCCCC---cccccCCCCCCcEEEc--cCCcCCcC----CcccccCCCCCCEEECcCCCCC
Q 038149 172 VNLRNLEVLDLSGNRITGSL---IMQGICDLKNLVELNI--NENEFDGL----LPQCLSNLTYLRVLDLSSNKLS 237 (844)
Q Consensus 172 ~~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~ 237 (844)
...+.|++|+|++|.+...- ....+...+.|++|+| ++|.+... +...+...+.|++|++++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 33344555555555443110 1123444555666666 55655543 2233444566777777776653
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=3.3e-07 Score=92.52 Aligned_cols=66 Identities=27% Similarity=0.288 Sum_probs=33.0
Q ss_pred hccccCeEeccCccccc--ccCcccccccCCCEEeCCCCcccccCCccccCCC--CCCEEEccCCcccccCC
Q 038149 728 YLGEIHALNLSNNFLSG--SIPRSFSNLKMTESMDLSYNKLNGQIPPELGELS--FLAIFNVSYNNLSGTVP 795 (844)
Q Consensus 728 ~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~g~ip 795 (844)
+++.|++|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. .|+.|+|++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34555555555555554 3344445555555555555555543 2222222 55555555555555554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=5e-07 Score=86.78 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=9.5
Q ss_pred cCCCCCCCEEEcCCCccc
Q 038149 630 LCHLRKLAIVDISYNTLN 647 (844)
Q Consensus 630 l~~l~~L~~L~Ls~N~l~ 647 (844)
+...+.|+.|+|++|.+.
T Consensus 147 L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEeccCCCCC
Confidence 334455566666665553
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=6.2e-06 Score=76.91 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=42.9
Q ss_pred CCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCCCC-CCCCchhhhcCC----CCCCEEECCCCC-CCCCCcCcccc
Q 038149 98 ELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGYNS-FNESLVPLLTSL----TSLTSLFLQGNS-FSEGFKHNKGL 171 (844)
Q Consensus 98 ~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~l 171 (844)
.|++||++++.++...- ..+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|. ++...+ ..+
T Consensus 62 ~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--~~L 135 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI--IAL 135 (176)
T ss_dssp CEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH--HHG
T ss_pred eEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH--HHH
Confidence 46677777666544322 455666666666666663 555444555543 246666665553 432111 233
Q ss_pred cCCCCCCEEEccCC
Q 038149 172 VNLRNLEVLDLSGN 185 (844)
Q Consensus 172 ~~l~~L~~L~Ls~n 185 (844)
.++++|++|+++++
T Consensus 136 ~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 136 HHFRNLKYLFLSDL 149 (176)
T ss_dssp GGCTTCCEEEEESC
T ss_pred hcCCCCCEEECCCC
Confidence 44555555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.53 E-value=2.6e-05 Score=72.74 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=40.6
Q ss_pred CCcEEeCcCcccCCcCCccccCCCCcCEecCCCCc-CcccccccccCC----CCCcEEEccCcc-cCcCCChhhhcCCCC
Q 038149 444 SLEFMNLSHNYFDGQIFPKYMNLAKLVFLFLNDNQ-FTGRLEVGLLNA----SSLYVLDVSNNM-LSGQLPRWIGKFSNL 517 (844)
Q Consensus 444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~ls~n~-l~~~~p~~l~~l~~L 517 (844)
.|+.|+++++.++......+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56666666666555444445555555555555553 443322223322 245555555552 443322334445555
Q ss_pred CEEeCCCCc
Q 038149 518 DVLLMSRNS 526 (844)
Q Consensus 518 ~~L~ls~n~ 526 (844)
+.|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.10 E-value=0.00011 Score=69.93 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=30.8
Q ss_pred CCCCCcEEeCCCC-CCCCCCccccccccCCCCCCCEEeCCCCCCCCC----chhhhcCCCCCCEEECCCCCC
Q 038149 95 PFQELHVLDLSDN-RFEGWEENKAYNTSRSLKQLKILNIGYNSFNES----LVPLLTSLTSLTSLFLQGNSF 161 (844)
Q Consensus 95 ~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l 161 (844)
.-+.|++|+|+++ .|.......+..++..-+.|+.|+|++|.+.+. +...+..-+.|++|+|+.|.|
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3455666666553 444332222334444555555555555555432 222233344444444444444
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.58 E-value=0.0017 Score=61.68 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=27.6
Q ss_pred CCCCCCEEECCCCcCCcc----cchhhhCCCCCCEEEccCC---cccc----cCCcccCCCCCCCEEEcCCCcc
Q 038149 584 QSSQLTTLDLRDNEFSGN----IAHLINEDSNLRALLLRGN---NLQG----NIPEPLCHLRKLAIVDISYNTL 646 (844)
Q Consensus 584 ~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N---~l~~----~~p~~l~~l~~L~~L~Ls~N~l 646 (844)
.-+.|++|+|++|.|... +.+.+..-+.|++|+|++| .+.. .+...+..-+.|+.|+++.|.+
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 334445555555544421 1222333344555555433 2221 1223344445566666665543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.42 E-value=0.0042 Score=55.03 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=34.6
Q ss_pred EEEeecCccc-CCCCchhhhccccCeEeccCcccccccCcccccccCCCEEeCCCCccc
Q 038149 710 GLDLSSNELT-GDIPSEIGYLGEIHALNLSNNFLSGSIPRSFSNLKMTESMDLSYNKLN 767 (844)
Q Consensus 710 ~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 767 (844)
.+|-+++.++ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777765 35554432 35667777777776544555666666666666666553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.35 E-value=0.004 Score=55.12 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=44.3
Q ss_pred CeEeccCcccc-cccCcccccccCCCEEeCCCCcccccCCccccCCCCCCEEEccCCcccc
Q 038149 733 HALNLSNNFLS-GSIPRSFSNLKMTESMDLSYNKLNGQIPPELGELSFLAIFNVSYNNLSG 792 (844)
Q Consensus 733 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 792 (844)
..++.+++.++ ..+|..+. ++|+.|||++|+|+..-+..|..+++|++|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36888888886 46675543 468888888888886666677888888888888888864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.90 E-value=13 Score=30.39 Aligned_cols=45 Identities=13% Similarity=0.046 Sum_probs=26.0
Q ss_pred CcccCCCCccCCCCCcEEeCCCCCCCCCCccccccccCCCCCCCEEeCCC
Q 038149 85 FPIINMSLFVPFQELHVLDLSDNRFEGWEENKAYNTSRSLKQLKILNIGY 134 (844)
Q Consensus 85 ~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~ 134 (844)
+..+...+|..++.|+.+.+..+ ++.+.. .+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~----~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYD----GMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCT----TSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcH----HHHhccCCccEEEEcC
Confidence 34556666777777777776643 344433 4555666666665543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.78 E-value=17 Score=29.74 Aligned_cols=15 Identities=13% Similarity=0.064 Sum_probs=6.6
Q ss_pred cccCCCCCCcEEEcc
Q 038149 194 QGICDLKNLVELNIN 208 (844)
Q Consensus 194 ~~l~~l~~L~~L~L~ 208 (844)
.+|.+|.+|+.+.+.
T Consensus 37 ~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 37 GMFSGCTALEKLILT 51 (100)
T ss_dssp TSSTTCTTCCCEEEC
T ss_pred HHHhccCCccEEEEc
Confidence 334444444444443
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.69 E-value=30 Score=18.57 Aligned_cols=10 Identities=20% Similarity=0.979 Sum_probs=7.3
Q ss_pred CCCCCCceEe
Q 038149 49 DCCTWERIKC 58 (844)
Q Consensus 49 ~~C~w~gv~c 58 (844)
.-|+|+|..-
T Consensus 6 gacswrglen 15 (23)
T 3ox7_P 6 GACSWRGLEN 15 (26)
T ss_pred cccccccchh
Confidence 4699998753
Done!