Query 038150
Match_columns 488
No_of_seqs 340 out of 3981
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.3E-30 1.2E-34 267.9 5.3 264 34-331 368-677 (889)
2 PLN00113 leucine-rich repeat r 99.9 1.2E-23 2.7E-28 231.2 14.2 262 154-444 67-343 (968)
3 PLN00113 leucine-rich repeat r 99.9 2.6E-23 5.6E-28 228.6 11.9 298 156-485 140-463 (968)
4 PLN03210 Resistant to P. syrin 99.9 3.9E-21 8.4E-26 211.9 17.5 128 156-303 589-716 (1153)
5 KOG0444 Cytoskeletal regulator 99.8 3.1E-23 6.7E-28 198.6 -4.0 285 156-487 78-375 (1255)
6 PLN03210 Resistant to P. syrin 99.8 4.6E-19 1E-23 195.6 16.3 299 154-487 556-882 (1153)
7 KOG4658 Apoptotic ATPase [Sign 99.8 1.2E-18 2.6E-23 183.0 12.8 203 239-451 567-788 (889)
8 KOG0472 Leucine-rich repeat pr 99.7 9.6E-20 2.1E-24 166.3 -1.3 91 376-485 425-539 (565)
9 KOG0444 Cytoskeletal regulator 99.7 3.8E-19 8.3E-24 170.8 0.1 243 146-427 93-379 (1255)
10 KOG4194 Membrane glycoprotein 99.7 9.9E-18 2.1E-22 160.0 2.1 280 153-484 99-402 (873)
11 KOG0618 Serine/threonine phosp 99.7 3.1E-18 6.7E-23 171.7 -3.0 213 234-487 255-489 (1081)
12 KOG4194 Membrane glycoprotein 99.6 2.6E-17 5.6E-22 157.2 0.4 272 155-485 124-427 (873)
13 KOG0472 Leucine-rich repeat pr 99.6 5.7E-18 1.2E-22 154.8 -4.4 240 156-444 68-308 (565)
14 cd00116 LRR_RI Leucine-rich re 99.6 6E-16 1.3E-20 148.6 1.4 281 172-485 16-318 (319)
15 KOG0617 Ras suppressor protein 99.5 1.5E-16 3.3E-21 129.0 -3.6 165 202-431 30-194 (264)
16 PRK15370 E3 ubiquitin-protein 99.5 4E-14 8.6E-19 147.0 8.9 221 156-444 199-426 (754)
17 cd00116 LRR_RI Leucine-rich re 99.5 6.4E-15 1.4E-19 141.4 -0.6 267 184-485 3-289 (319)
18 KOG0618 Serine/threonine phosp 99.4 1.4E-14 3.1E-19 145.8 -1.6 218 179-445 241-488 (1081)
19 PRK15370 E3 ubiquitin-protein 99.4 5.2E-13 1.1E-17 138.8 8.8 225 157-452 179-406 (754)
20 PRK15387 E3 ubiquitin-protein 99.4 9.2E-13 2E-17 136.2 9.7 114 156-304 222-335 (788)
21 KOG0617 Ras suppressor protein 99.4 2.8E-14 6.1E-19 116.0 -2.9 150 153-329 30-180 (264)
22 PRK15387 E3 ubiquitin-protein 99.3 1.6E-11 3.5E-16 127.1 10.7 214 154-444 240-456 (788)
23 KOG4237 Extracellular matrix p 99.3 1.2E-12 2.5E-17 120.2 1.4 263 153-444 64-357 (498)
24 KOG4237 Extracellular matrix p 99.1 3.3E-12 7.1E-17 117.3 -2.8 257 169-452 59-340 (498)
25 KOG0532 Leucine-rich repeat (L 99.0 1.9E-11 4.2E-16 117.3 -3.0 197 153-421 72-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.0 5.2E-11 1.1E-15 114.4 -1.3 210 161-443 55-270 (722)
27 KOG1909 Ran GTPase-activating 99.0 2.5E-10 5.3E-15 103.7 2.7 248 174-444 25-309 (382)
28 KOG1259 Nischarin, modulator o 98.8 1.6E-09 3.5E-14 96.4 3.2 84 346-444 325-410 (490)
29 KOG1909 Ran GTPase-activating 98.8 3.2E-10 7E-15 103.0 -1.3 257 197-485 22-309 (382)
30 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3.1E-14 101.6 1.7 201 143-362 108-313 (505)
31 COG4886 Leucine-rich repeat (L 98.7 5.6E-09 1.2E-13 103.3 3.6 107 176-302 113-220 (394)
32 COG4886 Leucine-rich repeat (L 98.7 7.7E-09 1.7E-13 102.3 4.0 198 183-428 97-295 (394)
33 KOG2120 SCF ubiquitin ligase, 98.7 5.6E-10 1.2E-14 99.2 -4.9 182 268-484 186-373 (419)
34 KOG1259 Nischarin, modulator o 98.7 2.2E-09 4.8E-14 95.6 -1.4 42 380-422 368-411 (490)
35 KOG3207 Beta-tubulin folding c 98.6 8.9E-09 1.9E-13 96.4 0.3 210 201-444 117-337 (505)
36 PF14580 LRR_9: Leucine-rich r 98.6 1.2E-08 2.5E-13 86.9 0.7 106 177-304 17-126 (175)
37 PLN03150 hypothetical protein; 98.5 8.7E-08 1.9E-12 99.5 5.6 71 234-304 433-503 (623)
38 PF14580 LRR_9: Leucine-rich r 98.5 1.1E-07 2.4E-12 80.9 4.3 81 349-444 41-124 (175)
39 KOG4341 F-box protein containi 98.5 7.3E-09 1.6E-13 96.4 -3.6 146 289-452 292-445 (483)
40 KOG2120 SCF ubiquitin ligase, 98.4 1.4E-08 3E-13 90.5 -3.1 183 244-444 186-374 (419)
41 PLN03150 hypothetical protein; 98.4 4.8E-07 1E-11 94.0 6.8 107 180-302 419-526 (623)
42 KOG4341 F-box protein containi 98.4 5.9E-08 1.3E-12 90.5 -0.5 89 157-257 139-230 (483)
43 KOG0531 Protein phosphatase 1, 98.1 7E-07 1.5E-11 88.6 0.2 108 175-304 91-199 (414)
44 PF13855 LRR_8: Leucine rich r 98.0 3.1E-06 6.7E-11 58.9 2.7 59 386-444 1-60 (61)
45 KOG3665 ZYG-1-like serine/thre 98.0 3.9E-06 8.5E-11 87.2 3.8 138 205-363 122-263 (699)
46 PF13855 LRR_8: Leucine rich r 98.0 5.9E-06 1.3E-10 57.5 3.2 59 205-278 1-60 (61)
47 COG5238 RNA1 Ran GTPase-activa 97.9 4.5E-06 9.8E-11 73.8 2.4 248 176-444 27-314 (388)
48 KOG2982 Uncharacterized conser 97.9 1.1E-05 2.5E-10 72.3 4.9 206 176-441 68-287 (418)
49 KOG1859 Leucine-rich repeat pr 97.9 1.4E-06 3.1E-11 86.9 -2.0 109 197-330 179-287 (1096)
50 PRK15386 type III secretion pr 97.9 6.9E-05 1.5E-09 72.0 9.3 66 201-286 48-113 (426)
51 KOG3665 ZYG-1-like serine/thre 97.9 6E-06 1.3E-10 85.8 2.1 109 179-303 122-232 (699)
52 PRK15386 type III secretion pr 97.8 8.9E-05 1.9E-09 71.3 8.9 138 239-421 48-188 (426)
53 KOG0531 Protein phosphatase 1, 97.8 2.2E-06 4.8E-11 85.1 -2.3 215 177-444 70-288 (414)
54 KOG1859 Leucine-rich repeat pr 97.6 1.8E-06 3.9E-11 86.2 -5.4 17 201-217 105-121 (1096)
55 PF12799 LRR_4: Leucine Rich r 97.6 7.3E-05 1.6E-09 47.7 3.1 19 235-253 16-34 (44)
56 KOG2982 Uncharacterized conser 97.6 8.4E-05 1.8E-09 66.9 4.3 190 202-449 68-265 (418)
57 COG5238 RNA1 Ran GTPase-activa 97.4 0.00015 3.2E-09 64.5 3.9 256 200-483 25-312 (388)
58 PF12799 LRR_4: Leucine Rich r 97.3 0.00027 5.8E-09 45.1 3.3 34 387-421 2-35 (44)
59 KOG1644 U2-associated snRNP A' 97.2 0.0006 1.3E-08 58.1 5.0 106 350-483 42-149 (233)
60 PF00931 NB-ARC: NB-ARC domain 97.2 0.00035 7.5E-09 65.9 3.8 37 81-118 246-282 (287)
61 KOG4579 Leucine-rich repeat (L 97.1 0.00013 2.9E-09 58.0 0.5 53 244-298 78-130 (177)
62 KOG1947 Leucine rich repeat pr 97.0 0.00012 2.6E-09 74.5 -1.1 117 177-303 186-307 (482)
63 KOG1947 Leucine rich repeat pr 96.7 0.00045 9.7E-09 70.3 -0.0 29 406-435 358-389 (482)
64 KOG4579 Leucine-rich repeat (L 96.6 0.0017 3.6E-08 51.9 2.9 87 157-262 54-141 (177)
65 KOG2739 Leucine-rich acidic nu 96.5 0.00085 1.8E-08 59.6 0.8 17 344-360 59-75 (260)
66 KOG2123 Uncharacterized conser 96.3 0.0002 4.4E-09 63.8 -4.5 58 384-444 39-99 (388)
67 KOG2123 Uncharacterized conser 96.1 0.001 2.3E-08 59.5 -0.9 99 178-297 18-123 (388)
68 KOG2739 Leucine-rich acidic nu 95.8 0.0027 5.9E-08 56.5 0.3 13 203-215 63-75 (260)
69 KOG3864 Uncharacterized conser 95.1 0.0022 4.9E-08 54.7 -2.6 66 379-444 118-187 (221)
70 KOG1644 U2-associated snRNP A' 95.0 0.02 4.3E-07 49.1 3.0 105 205-331 42-149 (233)
71 PF00560 LRR_1: Leucine Rich R 94.3 0.023 5E-07 30.0 1.1 10 207-216 2-11 (22)
72 PF00560 LRR_1: Leucine Rich R 94.3 0.017 3.8E-07 30.4 0.6 21 244-265 1-21 (22)
73 KOG3864 Uncharacterized conser 91.9 0.012 2.7E-07 50.3 -3.5 75 339-424 114-190 (221)
74 KOG4308 LRR-containing protein 91.5 0.0065 1.4E-07 60.8 -6.5 197 181-399 89-303 (478)
75 PF13504 LRR_7: Leucine rich r 90.5 0.17 3.8E-06 24.6 1.3 11 206-216 2-12 (17)
76 KOG0473 Leucine-rich repeat pr 90.1 0.028 6.1E-07 49.3 -3.0 84 201-301 38-121 (326)
77 PF13306 LRR_5: Leucine rich r 88.3 0.95 2.1E-05 36.3 4.9 97 381-488 30-129 (129)
78 PF12061 DUF3542: Protein of u 85.7 1.1 2.4E-05 41.2 4.1 54 6-60 318-373 (402)
79 smart00369 LRR_TYP Leucine-ric 80.5 1.3 2.8E-05 24.2 1.6 11 206-216 3-13 (26)
80 smart00370 LRR Leucine-rich re 80.5 1.3 2.8E-05 24.2 1.6 11 206-216 3-13 (26)
81 KOG4308 LRR-containing protein 79.7 0.11 2.3E-06 52.3 -5.2 219 158-398 89-330 (478)
82 KOG0473 Leucine-rich repeat pr 77.0 0.27 5.9E-06 43.3 -2.7 84 176-278 39-122 (326)
83 smart00367 LRR_CC Leucine-rich 74.1 1.7 3.7E-05 23.7 0.9 15 473-487 1-15 (26)
84 PF07544 Med9: RNA polymerase 63.3 16 0.00034 26.9 4.3 47 4-53 23-69 (83)
85 PF13516 LRR_6: Leucine Rich r 60.3 2 4.3E-05 22.9 -0.6 10 244-253 3-12 (24)
86 PF13306 LRR_5: Leucine rich r 57.1 25 0.00053 27.9 5.1 69 381-454 7-77 (129)
87 smart00364 LRR_BAC Leucine-ric 55.5 7.8 0.00017 21.3 1.2 14 387-400 3-16 (26)
88 TIGR02501 type_III_yscE type I 54.3 73 0.0016 22.3 6.9 57 4-61 8-64 (67)
89 PF05055 DUF677: Protein of un 52.2 73 0.0016 30.5 7.9 58 5-62 260-317 (336)
90 PF06657 Cep57_MT_bd: Centroso 50.8 52 0.0011 23.9 5.2 31 2-32 17-47 (79)
91 KOG3763 mRNA export factor TAP 50.0 7.7 0.00017 39.0 1.1 84 347-440 215-308 (585)
92 PF08614 ATG16: Autophagy prot 49.4 47 0.001 29.0 5.8 89 6-119 99-188 (194)
93 PF00512 HisKA: His Kinase A ( 48.2 75 0.0016 21.7 5.8 50 12-61 11-61 (68)
94 PF12875 DUF3826: Protein of u 42.2 30 0.00065 29.5 3.2 48 8-55 96-150 (188)
95 smart00368 LRR_RI Leucine rich 41.5 19 0.00042 20.0 1.4 12 205-216 2-13 (28)
96 PHA02067 hypothetical protein 40.0 1.2E+02 0.0026 26.4 6.5 59 9-71 39-97 (221)
97 smart00365 LRR_SD22 Leucine-ri 37.4 28 0.0006 19.1 1.6 12 205-216 2-13 (26)
98 KOG3763 mRNA export factor TAP 36.5 12 0.00025 37.8 -0.0 86 383-480 215-307 (585)
99 PF09869 DUF2096: Uncharacteri 35.5 1.2E+02 0.0026 25.5 5.6 44 9-54 49-92 (169)
100 PRK10869 recombination and rep 34.0 1.9E+02 0.004 30.2 8.2 40 24-63 249-288 (553)
101 PF12178 INCENP_N: Chromosome 32.7 85 0.0018 19.1 3.2 24 20-49 14-37 (38)
102 PF05508 Ran-binding: RanGTP-b 31.8 76 0.0016 29.6 4.4 52 10-61 85-143 (302)
103 PRK14722 flhF flagellar biosyn 29.4 3.8E+02 0.0082 26.3 9.0 46 7-52 38-90 (374)
104 smart00806 AIP3 Actin interact 29.1 84 0.0018 30.9 4.4 41 3-48 251-291 (426)
105 KOG4657 Uncharacterized conser 28.9 3.5E+02 0.0076 24.0 7.6 66 4-70 88-164 (246)
106 PF10975 DUF2802: Protein of u 26.6 2.4E+02 0.0051 20.0 5.9 54 6-60 2-55 (70)
107 PF02671 PAH: Paired amphipath 26.4 1.7E+02 0.0038 18.4 4.3 26 36-61 19-44 (47)
108 PRK11020 hypothetical protein; 25.8 3.2E+02 0.007 21.3 6.2 50 6-56 2-51 (118)
109 PRK05703 flhF flagellar biosyn 25.7 3.3E+02 0.0072 27.2 8.1 44 6-49 127-174 (424)
110 PF13907 DUF4208: Domain of un 24.7 2.6E+02 0.0057 21.3 5.7 49 12-61 16-64 (100)
111 PF11348 DUF3150: Protein of u 23.0 1.2E+02 0.0027 27.8 4.2 58 5-63 84-144 (257)
112 PRK12727 flagellar biosynthesi 22.9 3.8E+02 0.0082 27.8 7.8 44 8-51 259-307 (559)
113 TIGR03499 FlhF flagellar biosy 22.5 4.3E+02 0.0093 24.6 7.8 14 139-152 196-209 (282)
114 smart00388 HisKA His Kinase A 22.3 2.3E+02 0.0049 18.3 5.0 48 13-61 12-59 (66)
115 PF10167 NEP: Uncharacterised 21.8 1.3E+02 0.0027 23.9 3.4 26 35-60 50-75 (118)
116 PRK06995 flhF flagellar biosyn 20.9 5.8E+02 0.012 26.0 8.7 14 139-152 258-271 (484)
117 PF14515 HOASN: Haem-oxygenase 20.9 1.5E+02 0.0033 21.2 3.3 20 104-123 73-92 (93)
118 PF08581 Tup_N: Tup N-terminal 20.5 3.5E+02 0.0075 19.7 7.1 63 3-68 5-71 (79)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.96 E-value=5.3e-30 Score=267.94 Aligned_cols=264 Identities=26% Similarity=0.293 Sum_probs=185.7
Q ss_pred CcHHHHHHHHHHHHhhhc-hHHH--HHHHHHhhhhhhhccCcCcccccccccccccceeecccccCCCcccccchhhhHH
Q 038150 34 KDKAVRHWLGRLKYASYD-IEDV--LDEWITGRRKLQIEGGIGENALIAPHKKKKVRFCFRASCLGFKTEEFGFKQVFLR 110 (488)
Q Consensus 34 ~~~~v~~w~~~lr~~~yd-~eD~--id~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~cf~~~cs~fped~~i~~~~l~~ 110 (488)
....+.+|.+....+.-. +.+. .++..+.+++.+++ .++.++|.||+| ||+|||||+|.++.++.
T Consensus 368 ~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd-----------~L~~~lK~CFLy-calFPED~~I~~e~Li~ 435 (889)
T KOG4658|consen 368 CKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYD-----------NLPEELKSCFLY-CALFPEDYEIKKEKLIE 435 (889)
T ss_pred CCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHh-----------hhhHHHHHHHHh-hccCCcccccchHHHHH
Confidence 345577898887765322 3333 45666677777777 457899999999 99999999999999999
Q ss_pred HHHHHHHHHHH-------HHHHHHHhhhccccccc--------------------------------cccccCCC-CCC-
Q 038150 111 HDIANKIKEMN-------EELHDIATQKDIQNECF--------------------------------SMAINGSE-EPN- 149 (488)
Q Consensus 111 ~~ia~~i~~i~-------~~l~~i~~~~~~~~~~~--------------------------------~~~~~g~~-~~~- 149 (488)
+||||||.+-. +.-.++...-.+..++. ...++..+ |..
T Consensus 436 yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~ 515 (889)
T KOG4658|consen 436 YWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE 515 (889)
T ss_pred HHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc
Confidence 99999963210 00000000000000000 00111111 111
Q ss_pred -CcccccccceeeEEEEecCCcCccccccccCcceecccccch-hhhhhHHHHHhcCCccceeecCCCcccccccCCccc
Q 038150 150 -ATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSL-LNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVP 227 (488)
Q Consensus 150 -~t~~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~-~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp 227 (488)
....+...+|++++..+....++... .+++|++|.+.+|.. +.. ....+|..++.||||||++|.- .+
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~-----l~--- 585 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSS-----LS--- 585 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCc-----cC---
Confidence 11245567788888888776666443 567899999999853 444 5666799999999999999873 44
Q ss_pred ccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCC
Q 038150 228 RNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGV 307 (488)
Q Consensus 228 ~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~ 307 (488)
++|++|+.|.+||+|++++ +.+..+|.++++|++|.||++..+.....+|..+..|++|++|.+.......
T Consensus 586 ------~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-- 656 (889)
T KOG4658|consen 586 ------KLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-- 656 (889)
T ss_pred ------cCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc--
Confidence 8999999999999999999 5589999999999999999999988666666666779999999987665222
Q ss_pred CCCcccCcccccCCCccccccccc
Q 038150 308 DGRKACRLESLKNLEHLQVCGISR 331 (488)
Q Consensus 308 ~~~~~~~~~~l~~L~~L~~L~~~~ 331 (488)
....+.++.+|.+|+.+.+..
T Consensus 657 ---~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 657 ---DKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ---chhhHHhhhcccchhhheeec
Confidence 345667778888888877643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.2e-23 Score=231.15 Aligned_cols=262 Identities=19% Similarity=0.266 Sum_probs=157.1
Q ss_pred ccccceeeEEEEecC-CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCccccc-cc
Q 038150 154 LDEKVRHLMLIFSKA-ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRN-IE 231 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~-i~ 231 (488)
...+|+.+++..+.. ..++..+..+++|++|++++| .+.+..++..+..+++||+|+|++|.+ .+.+|.. +.
T Consensus 67 ~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l-----~~~~p~~~l~ 140 (968)
T PLN00113 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNF-----TGSIPRGSIP 140 (968)
T ss_pred CCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCcc-----ccccCccccC
Confidence 345788888887765 455667788999999999987 454313334455888999999998886 4444431 11
Q ss_pred Cc------------cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCce
Q 038150 232 KL------------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF 299 (488)
Q Consensus 232 ~l------------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 299 (488)
+| .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++.
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 11 567778888888888888876666777778888888888888877666777777788888888777
Q ss_pred eecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh
Q 038150 300 HVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL 379 (488)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 379 (488)
.|...+. ....+.++++|+.|++....-. ...+..+.++++|+.|++++|.+.+ .+|
T Consensus 221 ~n~l~~~-------~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~------------~~p 277 (968)
T PLN00113 221 YNNLSGE-------IPYEIGGLTSLNHLDLVYNNLT----GPIPSSLGNLKNLQYLFLYQNKLSG------------PIP 277 (968)
T ss_pred CCccCCc-------CChhHhcCCCCCEEECcCceec----cccChhHhCCCCCCEEECcCCeeec------------cCc
Confidence 7765431 2233455566666655433211 1123455666666666666665532 223
Q ss_pred hhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 380 EALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 380 ~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
.++..+++|+.|++++|.+...+|.++..+++|+.|++++|.....+|. ++.+++|+.|++++|.
T Consensus 278 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 3344444444444444444333444444444444444444444333333 4444444444444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=2.6e-23 Score=228.61 Aligned_cols=298 Identities=20% Similarity=0.183 Sum_probs=139.2
Q ss_pred ccceeeEEEEecC-CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150 156 EKVRHLMLIFSKA-ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV 234 (488)
Q Consensus 156 ~~vr~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~ 234 (488)
..++.+++..+.. ..+|..++++++|++|++.+| .+.. .+|..+.++++|++|+|++|.+ .+ .
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~~~~l~~L~~L~L~~n~l-----~~---------~ 203 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVG-KIPNSLTNLTSLEFLTLASNQL-----VG---------Q 203 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccc-cCChhhhhCcCCCeeeccCCCC-----cC---------c
Confidence 3455555555554 345555666666666666665 3333 4555566666666666666664 44 3
Q ss_pred CchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCC----
Q 038150 235 LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGR---- 310 (488)
Q Consensus 235 lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~---- 310 (488)
+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++..|.+.+..+..
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 283 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283 (968)
T ss_pred CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc
Confidence 4444555555555555554444445555555555555555555444444444555555555555444433210000
Q ss_pred -------------cccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHH
Q 038150 311 -------------KACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQL 377 (488)
Q Consensus 311 -------------~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 377 (488)
.......+.++++|+.|.+....-.. ..+..+..+++|+.|++++|.+. ..
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~------------~~ 347 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG----KIPVALTSLPRLQVLQLWSNKFS------------GE 347 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC----cCChhHhcCCCCCEEECcCCCCc------------Cc
Confidence 00011112233333333332211100 11233444455555555555443 23
Q ss_pred HhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCC
Q 038150 378 LLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGI 456 (488)
Q Consensus 378 ~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 456 (488)
+|..+..+++|+.|++++|.+...+|.++..+++|+.|++++|.....+|. ++.+++|+.|++++|.....+|..+...
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 344444555555555555554433455555555555555555554444444 5555566666665554322333221111
Q ss_pred CCCCC-------CCCCCCcccccCcccccccccccc
Q 038150 457 ESDHH-------GSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 457 ~~~~~-------~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
..... -..........+|+|+.|.+.+|.
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 10000 000001113457888888888764
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=3.9e-21 Score=211.94 Aligned_cols=128 Identities=30% Similarity=0.368 Sum_probs=95.5
Q ss_pred ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150 156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL 235 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l 235 (488)
..+|.+.+..+....+|..+ ...+|+.|++.++ .+. .++..+..+++|++|+|+++.. .+ .+
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~--~L~~~~~~l~~Lk~L~Ls~~~~-----l~---------~i 650 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLE--KLWDGVHSLTGLRNIDLRGSKN-----LK---------EI 650 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-ccc--ccccccccCCCCCEEECCCCCC-----cC---------cC
Confidence 34566666666666777655 5789999999997 555 4566678899999999998864 55 34
Q ss_pred chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecC
Q 038150 236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSA 303 (488)
Q Consensus 236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 303 (488)
| .++.+++|++|++++|..+..+|..++++++|++|++++|.....+|..+ ++++|++|++.+|..
T Consensus 651 p-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 651 P-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred C-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence 4 36677888888888887778888888888888888888877677777765 677888887776643
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=3.1e-23 Score=198.61 Aligned_cols=285 Identities=20% Similarity=0.185 Sum_probs=157.4
Q ss_pred ccceeeEEEEecC--CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150 156 EKVRHLMLIFSKA--ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL 233 (488)
Q Consensus 156 ~~vr~l~l~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l 233 (488)
..+|.+.+..+.. ..+|..+..+..|.+|+++.| .+. ..|..+...+++-||+||+|. +.
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~--EvP~~LE~AKn~iVLNLS~N~------Ie--------- 139 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLR--EVPTNLEYAKNSIVLNLSYNN------IE--------- 139 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchh-hhh--hcchhhhhhcCcEEEEcccCc------cc---------
Confidence 4445444444444 445666666677777777765 454 355556666777777777776 55
Q ss_pred cCchhh-hhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150 234 VLPETL-CELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA 312 (488)
Q Consensus 234 ~lp~~i-~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 312 (488)
.+|.++ -+|..|-+|||+.|. +..+|+.+..|..|++|.+++|.+.-.-...+-.|++|++|++++.+..- .
T Consensus 140 tIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl------~ 212 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL------D 212 (1255)
T ss_pred cCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh------h
Confidence 333333 366667777777744 66677777777777777777766322111234445666666666554432 2
Q ss_pred cCcccccCCCccccccc--ccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCE
Q 038150 313 CRLESLKNLEHLQVCGI--SRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKE 390 (488)
Q Consensus 313 ~~~~~l~~L~~L~~L~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 390 (488)
.....+..|.+|+.+++ +.+.. ++..+-++.+|+.|.+++|.++.. --..+...+|++
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~-------vPecly~l~~LrrLNLS~N~iteL-------------~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPI-------VPECLYKLRNLRRLNLSGNKITEL-------------NMTEGEWENLET 272 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCc-------chHHHhhhhhhheeccCcCceeee-------------eccHHHHhhhhh
Confidence 23334444555555444 33333 335666778888888888876422 112222345666
Q ss_pred EEeccccCCCCCchHHHhccCCcEEeecCCCCCC-CCCC-CCCCCCcCeeeecccccceeeCccccCCCCCC------CC
Q 038150 391 LEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCE-QLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDH------HG 462 (488)
Q Consensus 391 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~------~~ 462 (488)
|.++.|.++. +|..+..+++|+.|.+.+|...- .+|+ +|+|.+|+.+...++. ++-+|+++..+...+ ..
T Consensus 273 LNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 273 LNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccc
Confidence 6666666665 66666666666666666555332 2454 5555555555554433 444444322211000 00
Q ss_pred CCCCCcccccCcccccccccccccC
Q 038150 463 SSSSSSVIIAFPKLKSLSIEVLREL 487 (488)
Q Consensus 463 ~~~~~~~~~~~p~L~~L~l~~~p~L 487 (488)
-..-.....-+|.|+.|++++.|+|
T Consensus 351 LiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 351 LITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred eeechhhhhhcCCcceeeccCCcCc
Confidence 0000111345788999999988886
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=4.6e-19 Score=195.58 Aligned_cols=299 Identities=22% Similarity=0.193 Sum_probs=197.2
Q ss_pred ccccceeeEEEEecC-------CcCccccccc-cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCc
Q 038150 154 LDEKVRHLMLIFSKA-------ASLPISTLRV-KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPE 225 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~-------~~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~ 225 (488)
....++.+.+..... ..+|..+..+ .+||.|.+.++ .+. .+|..| ...+|++|+++++. +.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~--~lP~~f-~~~~L~~L~L~~s~------l~- 624 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLR--CMPSNF-RPENLVKLQMQGSK------LE- 624 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCC--CCCCcC-CccCCcEEECcCcc------cc-
Confidence 345666676654421 2345555554 46999999886 444 466655 57899999999998 55
Q ss_pred ccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150 226 VPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 226 lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~ 305 (488)
.+|..+..+++|++|++++|..+..+| .++.+++|++|++.+|.....+|..++++++|+.|++.+|....
T Consensus 625 --------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 625 --------KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred --------ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence 667778889999999999988788887 58899999999999998888999999999999999998875433
Q ss_pred CCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhc----------c----
Q 038150 306 GVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERR----------K---- 371 (488)
Q Consensus 306 ~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----------~---- 371 (488)
. .+..+ ++++|+.|.+.++..+.... ....+|+.|+++++.+........ .
T Consensus 696 ~----Lp~~i----~l~sL~~L~Lsgc~~L~~~p-------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 696 I----LPTGI----NLKSLYRLNLSGCSRLKSFP-------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760 (1153)
T ss_pred c----cCCcC----CCCCCCEEeCCCCCCccccc-------cccCCcCeeecCCCccccccccccccccccccccccchh
Confidence 2 12221 56677777776654433211 113456666666665422110000 0
Q ss_pred ---ccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeeccccccee
Q 038150 372 ---NEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKR 448 (488)
Q Consensus 372 ---~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 448 (488)
+......+.....+++|+.|.+++|.....+|.+++.+++|+.|+|++|..++.+|....+++|+.|++++|..+..
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence 00000001112234689999999987666689999999999999999999888888755789999999999988776
Q ss_pred eCccccCCCCCC---CCCCCCCcccccCcccccccccccccC
Q 038150 449 VGDEFLGIESDH---HGSSSSSSVIIAFPKLKSLSIEVLREL 487 (488)
Q Consensus 449 ~~~~~~~~~~~~---~~~~~~~~~~~~~p~L~~L~l~~~p~L 487 (488)
+|.......... ..-.......+.+++|+.|.+.+|++|
T Consensus 841 ~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 841 FPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred ccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence 653211110000 000111112445667777777666665
No 7
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.78 E-value=1.2e-18 Score=183.02 Aligned_cols=203 Identities=22% Similarity=0.235 Sum_probs=142.6
Q ss_pred hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150 239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL 318 (488)
Q Consensus 239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l 318 (488)
+..++.|++||+++|.....+|..++.|.+||+|+++++. +..+|.++++|+.|.+|++..+.... ......
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~-------~~~~i~ 638 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLE-------SIPGIL 638 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccc-------cccchh
Confidence 6679999999999999999999999999999999999998 67899999999999999998775433 112333
Q ss_pred cCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCc---hhhhhh---------hc-cccchHHHhhhCCCC
Q 038150 319 KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKE---EEEEGE---------RR-KNEDNQLLLEALRPP 385 (488)
Q Consensus 319 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~---------~~-~~~~~~~~~~~~~~~ 385 (488)
..|++|+.|.+.... ..........+.++++|+.+.+..... ...... .. ........+..+..+
T Consensus 639 ~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l 716 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL 716 (889)
T ss_pred hhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccc
Confidence 447777777665433 122233345556777777777754432 000000 00 112223344566778
Q ss_pred CCCCEEEeccccCCCCCchHH-----Hh-ccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCc
Q 038150 386 LNLKELEIEYYRGNTVFPSWM-----TS-LTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGD 451 (488)
Q Consensus 386 ~~L~~L~l~~~~~~~~lp~~~-----~~-l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 451 (488)
.+|+.|.+.+|.+.+....|. .. |+++..+.+.+|....++.+..-.|+|+.|.+..|..++.+..
T Consensus 717 ~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 717 GNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence 899999999988865222221 12 6778888888888888777766679999999999997777643
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=9.6e-20 Score=166.26 Aligned_cols=91 Identities=19% Similarity=0.228 Sum_probs=59.1
Q ss_pred HHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCC----------------------CCCCC-C-CCC
Q 038150 376 QLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCEN----------------------CEQLP-P-LGK 431 (488)
Q Consensus 376 ~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~----------------------~~~~~-~-l~~ 431 (488)
..+|..++.+++|..|++++|.... +|..++.+-.|+.|+|+.|++ .+.++ . ++.
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred ccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 3344455556666666666666665 666666666666666666643 12222 2 566
Q ss_pred CCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150 432 LQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 432 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
+.+|.+|++.++. +..+|.+ .|.+.+|++|.+++.|
T Consensus 504 m~nL~tLDL~nNd-lq~IPp~-----------------LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQNND-LQQIPPI-----------------LGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCCCc-hhhCChh-----------------hccccceeEEEecCCc
Confidence 7788888886655 7777765 6678888888888765
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=3.8e-19 Score=170.81 Aligned_cols=243 Identities=23% Similarity=0.233 Sum_probs=143.9
Q ss_pred CCCCCcccccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCc
Q 038150 146 EEPNATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPE 225 (488)
Q Consensus 146 ~~~~~t~~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~ 225 (488)
.|+....+..+.+..++++.+...+.|..+..-+++-+|++++| .+.. ++...|-++.-|-+||||+|. ...
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~Iet-IPn~lfinLtDLLfLDLS~Nr------Le~ 164 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIET-IPNSLFINLTDLLFLDLSNNR------LEM 164 (1255)
T ss_pred CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-cccc-CCchHHHhhHhHhhhccccch------hhh
Confidence 34444445566777888888888888888888888888888887 5554 555567778888888888887 664
Q ss_pred ccccccCc----------------------------------------cCchhhhhhccCcEeecCCCCCcccCchhhcc
Q 038150 226 VPRNIEKL----------------------------------------VLPETLCELYNLEKLDISDCFNLKELPEGIGK 265 (488)
Q Consensus 226 lp~~i~~l----------------------------------------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~ 265 (488)
+|..+.+| .+|.++..|.||+.+|++.|+ +..+|..+-+
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~ 243 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYK 243 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhh
Confidence 55444333 445555555555555555533 4445555555
Q ss_pred ccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccc----ccCCCChhhh
Q 038150 266 LINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR----LGDVSDVGEA 341 (488)
Q Consensus 266 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~----~~~~~~~~~~ 341 (488)
+.+|+.|++++|. ++.+--.++.+.+|++|+++.|+... .|. .+.+|++|+.|..+. +++++
T Consensus 244 l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~-----LP~---avcKL~kL~kLy~n~NkL~FeGiP----- 309 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTV-----LPD---AVCKLTKLTKLYANNNKLTFEGIP----- 309 (1255)
T ss_pred hhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhcc-----chH---HHhhhHHHHHHHhccCcccccCCc-----
Confidence 5555555555554 33333334455555555555554433 222 223334444433322 22322
Q ss_pred hHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCC
Q 038150 342 KRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCE 421 (488)
Q Consensus 342 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 421 (488)
..++++.+|+.+...+|.+ +.+|++++.+..|+.|.|+.|++.+ +|..|.-++.|..|++..|+
T Consensus 310 --SGIGKL~~Levf~aanN~L-------------ElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 310 --SGIGKLIQLEVFHAANNKL-------------ELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred --cchhhhhhhHHHHhhcccc-------------ccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence 4555566666666666654 5556666666666666666666666 66666666666666666666
Q ss_pred CCCCCC
Q 038150 422 NCEQLP 427 (488)
Q Consensus 422 ~~~~~~ 427 (488)
.+.-+|
T Consensus 374 nLVMPP 379 (1255)
T KOG0444|consen 374 NLVMPP 379 (1255)
T ss_pred CccCCC
Confidence 655544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=9.9e-18 Score=160.03 Aligned_cols=280 Identities=19% Similarity=0.232 Sum_probs=166.7
Q ss_pred cccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
++..+++.+++..+....+|.......+|..|++.+| .+.. .-.+.+..++.||+||||.|. +..+|..
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~s-v~se~L~~l~alrslDLSrN~------is~i~~~--- 167 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISS-VTSEELSALPALRSLDLSRNL------ISEIPKP--- 167 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeecc-cccc-ccHHHHHhHhhhhhhhhhhch------hhcccCC---
Confidence 5566667777777777777766556667788888776 4444 445567778888888888887 5544432
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCc-hhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCC
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELP-EGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGR 310 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~ 310 (488)
.+| .=.++++|+|++|. ++.+- ..+..+.+|-.|.++.|. +..+| ..+.+|+.|+.|++..|.+.-.
T Consensus 168 -sfp----~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iriv---- 236 (873)
T KOG4194|consen 168 -SFP----AKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIV---- 236 (873)
T ss_pred -CCC----CCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeee----
Confidence 222 22456666666654 33332 245556666666666666 33444 3355566666666655543320
Q ss_pred cccCcccccCCCccccccc--ccccCCCC------------------hhhhhHhhcccCCCCCceeecccCchhhhhhhc
Q 038150 311 KACRLESLKNLEHLQVCGI--SRLGDVSD------------------VGEAKRLELDKKKYLSSLTLWFDKEEEEEGERR 370 (488)
Q Consensus 311 ~~~~~~~l~~L~~L~~L~~--~~~~~~~~------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 370 (488)
.......+ ++|+.|.+ +.+..+.+ .......++-+++.|+.|++++|.+.
T Consensus 237 e~ltFqgL---~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~------- 306 (873)
T KOG4194|consen 237 EGLTFQGL---PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ------- 306 (873)
T ss_pred hhhhhcCc---hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-------
Confidence 01111222 22222211 11111110 01111245566777888888888764
Q ss_pred cccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeeccccccee
Q 038150 371 KNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKR 448 (488)
Q Consensus 371 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~ 448 (488)
.--++.|...+.|+.|+|+.|.+.+.-+..+..+..|+.|.+++|.. +.+.. +..+.+|++|+++++..--.
T Consensus 307 -----rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 307 -----RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred -----eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence 33456777788888888888888884466777888888888888873 33332 66788999999988873222
Q ss_pred eCccccCCCCCCCCCCCCCcccccCccccccccccc
Q 038150 449 VGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVL 484 (488)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 484 (488)
+.+.... ..++|+|++|.+.+.
T Consensus 381 IEDaa~~--------------f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 381 IEDAAVA--------------FNGLPSLRKLRLTGN 402 (873)
T ss_pred Eecchhh--------------hccchhhhheeecCc
Confidence 3222111 346999999998763
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=3.1e-18 Score=171.67 Aligned_cols=213 Identities=24% Similarity=0.246 Sum_probs=149.5
Q ss_pred cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150 234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC 313 (488)
Q Consensus 234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 313 (488)
.+|+.++.+.+|+.+++.+|. +..+|..+..+++|+.|.+..|. ...+|...+++++|++|++..|.+.. .+.
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~-----lp~ 327 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPS-----LPD 327 (1081)
T ss_pred cchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccc-----cch
Confidence 678888888888888888865 57888888888888888888888 67788888889999999998887655 222
Q ss_pred CcccccCCCc-cccccccc--ccCCC------------------ChhhhhHhhcccCCCCCceeecccCchhhhhhhccc
Q 038150 314 RLESLKNLEH-LQVCGISR--LGDVS------------------DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKN 372 (488)
Q Consensus 314 ~~~~l~~L~~-L~~L~~~~--~~~~~------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 372 (488)
... ..+.. |+.+.... .+..+ ...+.....+.+.++|+.|++++|++
T Consensus 328 ~~l--~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL---------- 395 (1081)
T KOG0618|consen 328 NFL--AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL---------- 395 (1081)
T ss_pred HHH--hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc----------
Confidence 111 11100 12111110 00000 01223445677889999999999987
Q ss_pred cchHHHhh-hCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCc
Q 038150 373 EDNQLLLE-ALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGD 451 (488)
Q Consensus 373 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 451 (488)
..+|+ .+.++..|+.|.|+||.+.+ +|..+..++.|+.|...+|. +..+|.+..++.|+.++++.|. ++.+..
T Consensus 396 ---~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N~-L~~~~l 469 (1081)
T KOG0618|consen 396 ---NSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCNN-LSEVTL 469 (1081)
T ss_pred ---ccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecccch-hhhhhh
Confidence 33443 46678889999999999998 99988889999988877766 5567788889999999997654 655532
Q ss_pred cccCCCCCCCCCCCCCcccccCcccccccccccccC
Q 038150 452 EFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLREL 487 (488)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p~L 487 (488)
.. .-.-|+||+|++.|.+++
T Consensus 470 ~~----------------~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 470 PE----------------ALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hh----------------hCCCcccceeeccCCccc
Confidence 21 111279999999988754
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=2.6e-17 Score=157.19 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=166.0
Q ss_pred cccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150 155 DEKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL 233 (488)
Q Consensus 155 ~~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l 233 (488)
...+.++.+..+.+.++. ..+..++.||+|+++.| .+.. .....|..-.++++|+|++|. ++.+-.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~-i~~~sfp~~~ni~~L~La~N~------It~l~~----- 190 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISE-IPKPSFPAKVNIKKLNLASNR------ITTLET----- 190 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhc-ccCCCCCCCCCceEEeecccc------cccccc-----
Confidence 345677777777665553 23555677777777776 4443 333335555667777777776 332211
Q ss_pred cCchhhhhhccCcEeecCCCCCcccCchh-hccccccceeeccCCCC-----------------------CCCCCCC-CC
Q 038150 234 VLPETLCELYNLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTNS-----------------------LRYMPVG-IG 288 (488)
Q Consensus 234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~-----------------------~~~lp~~-i~ 288 (488)
..+..|.+|-+|.|+.|. ++.+|.. +.+|++|+.|++..|.+ +..+-++ +-
T Consensus 191 ---~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 191 ---GHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred ---ccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 223344455555555533 4444432 33355555555555442 2222222 33
Q ss_pred CcccccccCceeecCCCCCCCCcccCcccccCCCccccccccc--ccCCCChhhhhHhhcccCCCCCceeecccCchhhh
Q 038150 289 RLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR--LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEE 366 (488)
Q Consensus 289 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 366 (488)
.|.++++|++..|+... -.-+-+-+|+.|+.|+++. ++.+. ...+..+++|+.|++++|+++
T Consensus 267 ~l~kme~l~L~~N~l~~-------vn~g~lfgLt~L~~L~lS~NaI~rih------~d~WsftqkL~~LdLs~N~i~--- 330 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQA-------VNEGWLFGLTSLEQLDLSYNAIQRIH------IDSWSFTQKLKELDLSSNRIT--- 330 (873)
T ss_pred eecccceeecccchhhh-------hhcccccccchhhhhccchhhhheee------cchhhhcccceeEeccccccc---
Confidence 44455555554444332 0112233455555555432 22222 356677899999999999985
Q ss_pred hhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCC----CCCCCCCcCeeeecc
Q 038150 367 GERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLP----PLGKLQSLENLHIWR 442 (488)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~~ 442 (488)
+.-++++..+..|++|.|+.|.+...--..+..+++|+.|++.+|.....+. .+..+|+|+.|.+.+
T Consensus 331 ---------~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 331 ---------RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred ---------cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 3334567778899999999998876223456689999999999998654332 256699999999998
Q ss_pred cccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150 443 MESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 443 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
+. ++.++...+ .+|+.|+.|++.+.+
T Consensus 402 Nq-lk~I~krAf----------------sgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 402 NQ-LKSIPKRAF----------------SGLEALEHLDLGDNA 427 (873)
T ss_pred ce-eeecchhhh----------------ccCcccceecCCCCc
Confidence 87 999986542 368999999988754
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=5.7e-18 Score=154.80 Aligned_cols=240 Identities=22% Similarity=0.209 Sum_probs=156.0
Q ss_pred ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150 156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL 235 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l 235 (488)
..+..+.+..+...+.|+.++.+..+..|+.+.| .+. .+|+.+.++..|+.|+.++|. .. .+
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls--~lp~~i~s~~~l~~l~~s~n~------~~---------el 129 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLS--ELPEQIGSLISLVKLDCSSNE------LK---------EL 129 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHh--hccHHHhhhhhhhhhhccccc------ee---------ec
Confidence 3444667777777888888888888899988887 454 477778889999999999988 45 55
Q ss_pred chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCc
Q 038150 236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL 315 (488)
Q Consensus 236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 315 (488)
|++|+.+..|..|+..+|. +..+|.+++++.+|..|++.+|. ...+|+..-+|+.|++|+...|.... ..
T Consensus 130 ~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~t--------lP 199 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLET--------LP 199 (565)
T ss_pred CchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhc--------CC
Confidence 6666666666666666643 56666666666666666666665 34444444346666666655554332 23
Q ss_pred ccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCC-CCCCCCEEEec
Q 038150 316 ESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALR-PPLNLKELEIE 394 (488)
Q Consensus 316 ~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~ 394 (488)
.+++.+.+|..|.+....-. +...+.++..|..|+++.|.+ ..+|.... .+++|..|++.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~------~lPef~gcs~L~Elh~g~N~i-------------~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR------FLPEFPGCSLLKELHVGENQI-------------EMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred hhhcchhhhHHHHhhhcccc------cCCCCCccHHHHHHHhcccHH-------------HhhHHHHhcccccceeeecc
Confidence 34444444544444322110 012455666677777777765 44454443 67777777777
Q ss_pred cccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150 395 YYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 395 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 444 (488)
.|.+.+ +|..+..+.+|.+|++++|.+..-.+.+|++ .|+.|.+.+++
T Consensus 261 dNklke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 261 DNKLKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccccc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 777777 7777777777888888777755544457777 77777777776
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.56 E-value=6e-16 Score=148.58 Aligned_cols=281 Identities=19% Similarity=0.144 Sum_probs=179.4
Q ss_pred ccccccccCcceecccccchhhh---hhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEe
Q 038150 172 PISTLRVKRMRTLLINDHSLLNA---AILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKL 248 (488)
Q Consensus 172 ~~~~~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L 248 (488)
...+..+.+|+.|.+.++ .+.. ..++..+...+.++.|+++++. .+..+..+. .++..+..+++|+.|
T Consensus 16 ~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~------~~~~~~~~~--~~~~~l~~~~~L~~L 86 (319)
T cd00116 16 TELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNE------TGRIPRGLQ--SLLQGLTKGCGLQEL 86 (319)
T ss_pred HHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccc------cCCcchHHH--HHHHHHHhcCceeEE
Confidence 344556677899999887 3321 1355667778889999998887 332222211 355667778899999
Q ss_pred ecCCCCCcccCchhhccccc---cceeeccCCCCCC----CCCCCCCCc-ccccccCceeecCCCCCCCCcccCcccccC
Q 038150 249 DISDCFNLKELPEGIGKLIN---VKHLLNRGTNSLR----YMPVGIGRL-TGLRTLGEFHVSAGGGVDGRKACRLESLKN 320 (488)
Q Consensus 249 ~l~~~~~~~~lp~~l~~L~~---L~~L~l~~~~~~~----~lp~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 320 (488)
++++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++.+|.+.+.. .......+..
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~ 163 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS---CEALAKALRA 163 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH---HHHHHHHHHh
Confidence 99998765556666666655 9999999887441 222345566 88899999888766411 1122334556
Q ss_pred CCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150 321 LEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT 400 (488)
Q Consensus 321 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 400 (488)
+++|+.|.+....-.......+...+..+++|+.|++++|.+.... ...+...+..+++|+.|++++|.+..
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--------~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG--------ASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH--------HHHHHHHhcccCCCCEEecCCCcCch
Confidence 6677777775543222222334455666789999999999875332 24566677788999999999987764
Q ss_pred CCchHHH-h----ccCCcEEeecCCCCCC----CCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCccc
Q 038150 401 VFPSWMT-S----LTNLKSLDLSSCENCE----QLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVI 470 (488)
Q Consensus 401 ~lp~~~~-~----l~~L~~L~l~~~~~~~----~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 470 (488)
.-+..+. . .+.|++|++++|.... .+.. +..+++|+++++++|. +...+...+... .
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~------------~ 302 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAES------------L 302 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHH------------H
Confidence 1222222 2 3799999999997652 1222 5566899999998887 333322211111 3
Q ss_pred ccC-cccccccccccc
Q 038150 471 IAF-PKLKSLSIEVLR 485 (488)
Q Consensus 471 ~~~-p~L~~L~l~~~p 485 (488)
..+ +.|++|++.+-|
T Consensus 303 ~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 303 LEPGNELESLWVKDDS 318 (319)
T ss_pred hhcCCchhhcccCCCC
Confidence 345 788888876643
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.5e-16 Score=129.04 Aligned_cols=165 Identities=22% Similarity=0.246 Sum_probs=125.2
Q ss_pred hcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC
Q 038150 202 RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR 281 (488)
Q Consensus 202 ~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~ 281 (488)
-.+.++.-|-||+|. +. .+|..|..|.+|+.|++.+|. ++++|..++.|++|++|++.-|+ ..
T Consensus 30 f~~s~ITrLtLSHNK------l~---------~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~ 92 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK------LT---------VVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LN 92 (264)
T ss_pred cchhhhhhhhcccCc------ee---------ecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hh
Confidence 345667777888888 44 677888889999999998854 88899999999999999998887 67
Q ss_pred CCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccC
Q 038150 282 YMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDK 361 (488)
Q Consensus 282 ~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 361 (488)
.+|.++|.++-|+.|++..|...... . +..+-.++.|+-|+++.|.
T Consensus 93 ~lprgfgs~p~levldltynnl~e~~------l----------------------------pgnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 93 ILPRGFGSFPALEVLDLTYNNLNENS------L----------------------------PGNFFYMTTLRALYLGDND 138 (264)
T ss_pred cCccccCCCchhhhhhcccccccccc------C----------------------------CcchhHHHHHHHHHhcCCC
Confidence 78899999999999998877654310 0 0111223456667777776
Q ss_pred chhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCC
Q 038150 362 EEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGK 431 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~ 431 (488)
+ +.+|..++.+++|+.|.+..|...+ +|..++.+..|+.|.|.+|+...-.|.++.
T Consensus 139 f-------------e~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 139 F-------------EILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred c-------------ccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 5 6778888889999999998888887 899999999999999998885444444544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=4e-14 Score=147.04 Aligned_cols=221 Identities=19% Similarity=0.231 Sum_probs=122.7
Q ss_pred ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150 156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL 235 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l 235 (488)
..++.+.+..+....+|..+. ++|++|++.+| .+. .+|..+. .+|+.|+|++|. +. .+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~Lt--sLP~~l~--~~L~~L~Ls~N~------L~---------~L 256 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLT--SIPATLP--DTIQEMELSINR------IT---------EL 256 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccc--cCChhhh--ccccEEECcCCc------cC---------cC
Confidence 456667776666666665442 46777777765 344 2343332 357777777776 44 33
Q ss_pred chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCc
Q 038150 236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL 315 (488)
Q Consensus 236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 315 (488)
|..+. .+|++|++++|. +..+|..+. .+|++|++++|. ...+|..+. ++|+.|++.+|.+.. .+..+
T Consensus 257 P~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l 323 (754)
T PRK15370 257 PERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTA-----LPETL 323 (754)
T ss_pred ChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCcccc-----CCccc
Confidence 43332 367777777654 556665553 467777777776 344554432 466777776665543 12111
Q ss_pred ccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEe
Q 038150 316 ESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEI 393 (488)
Q Consensus 316 ~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 393 (488)
.++|+.|.+... ..++ ..+ .++|+.|++++|.+. .+|..+ +++|+.|+|
T Consensus 324 -----~~sL~~L~Ls~N~Lt~LP-------~~l--~~sL~~L~Ls~N~L~-------------~LP~~l--p~~L~~LdL 374 (754)
T PRK15370 324 -----PPGLKTLEAGENALTSLP-------ASL--PPELQVLDVSKNQIT-------------VLPETL--PPTITTLDV 374 (754)
T ss_pred -----cccceeccccCCccccCC-------hhh--cCcccEEECCCCCCC-------------cCChhh--cCCcCEEEC
Confidence 134444444332 2222 111 256777777777653 233333 246777777
Q ss_pred ccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-----CCCCCCcCeeeecccc
Q 038150 394 EYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-----LGKLQSLENLHIWRME 444 (488)
Q Consensus 394 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-----l~~l~~L~~L~l~~~~ 444 (488)
++|.+.. +|..+. .+|+.|++++|.+. .+|. .+.+|.+..|.+.+|+
T Consensus 375 s~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 375 SRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 7777665 666543 35777777776643 3442 2334667777777665
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=6.4e-15 Score=141.45 Aligned_cols=267 Identities=20% Similarity=0.130 Sum_probs=177.4
Q ss_pred ecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc------c
Q 038150 184 LLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL------K 257 (488)
Q Consensus 184 L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~------~ 257 (488)
|++.++ .+....+...+..+.+|++|+++++.+ ...-.. .++..+...++|++|+++++... .
T Consensus 3 l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~l-----~~~~~~-----~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~ 71 (319)
T cd00116 3 LSLKGE-LLKTERATELLPKLLCLQVLRLEGNTL-----GEEAAK-----ALASALRPQPSLKELCLSLNETGRIPRGLQ 71 (319)
T ss_pred cccccC-cccccchHHHHHHHhhccEEeecCCCC-----cHHHHH-----HHHHHHhhCCCceEEeccccccCCcchHHH
Confidence 555554 343225667788888899999999984 211000 45667778888999999997543 1
Q ss_pred cCchhhccccccceeeccCCCCCCCCCCCCCCccc---ccccCceeecCCCCCCCCcccCcccccCC-Cccccccccccc
Q 038150 258 ELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTG---LRTLGEFHVSAGGGVDGRKACRLESLKNL-EHLQVCGISRLG 333 (488)
Q Consensus 258 ~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~---L~~L~l~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~~~~~~ 333 (488)
.++..+..+++|++|++++|.+....+..+..+.+ |++|++.+|...+.. .......+..+ ++|+.+.+..+.
T Consensus 72 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~---~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 72 SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG---LRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH---HHHHHHHHHhCCCCceEEEcCCCc
Confidence 24456778899999999999865555555555554 999999988765311 12222345566 788888887665
Q ss_pred CCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC----CchHHHhc
Q 038150 334 DVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV----FPSWMTSL 409 (488)
Q Consensus 334 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l 409 (488)
-.......+...+..+++|+.|++++|.+.+.. ...++..+...++|+.|++++|.+... ++..+..+
T Consensus 149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 149 LEGASCEALAKALRANRDLKELNLANNGIGDAG--------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred CCchHHHHHHHHHHhCCCcCEEECcCCCCchHH--------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 433334455667778899999999999876321 144555666678999999999987641 33445578
Q ss_pred cCCcEEeecCCCCCCC-CCCC-----CCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccc
Q 038150 410 TNLKSLDLSSCENCEQ-LPPL-----GKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEV 483 (488)
Q Consensus 410 ~~L~~L~l~~~~~~~~-~~~l-----~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 483 (488)
++|++|++++|..... +..+ ...+.|++|++.+|. ++..+...+... ...+++|+.+++.+
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~------------~~~~~~L~~l~l~~ 287 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEV------------LAEKESLLELDLRG 287 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHH------------HhcCCCccEEECCC
Confidence 8999999999985541 1111 135899999999986 332111111011 34567899988876
Q ss_pred cc
Q 038150 484 LR 485 (488)
Q Consensus 484 ~p 485 (488)
++
T Consensus 288 N~ 289 (319)
T cd00116 288 NK 289 (319)
T ss_pred CC
Confidence 53
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.42 E-value=1.4e-14 Score=145.79 Aligned_cols=218 Identities=24% Similarity=0.222 Sum_probs=148.2
Q ss_pred cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCccc
Q 038150 179 KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKE 258 (488)
Q Consensus 179 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~ 258 (488)
.+|.+++++.+ .+. .+|+++..+.+|..|+..+|.+ . .+|..+...++|+.|.+.+|. ++.
T Consensus 241 ~nl~~~dis~n-~l~--~lp~wi~~~~nle~l~~n~N~l------~---------~lp~ri~~~~~L~~l~~~~ne-l~y 301 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLS--NLPEWIGACANLEALNANHNRL------V---------ALPLRISRITSLVSLSAAYNE-LEY 301 (1081)
T ss_pred ccceeeecchh-hhh--cchHHHHhcccceEecccchhH------H---------hhHHHHhhhhhHHHHHhhhhh-hhh
Confidence 56666666665 344 2456666666666666666663 2 444555555555555555532 444
Q ss_pred CchhhccccccceeeccCCCCCCCCCCC--------------------------CCCcccccccCceeecCCCCCCCCcc
Q 038150 259 LPEGIGKLINVKHLLNRGTNSLRYMPVG--------------------------IGRLTGLRTLGEFHVSAGGGVDGRKA 312 (488)
Q Consensus 259 lp~~l~~L~~L~~L~l~~~~~~~~lp~~--------------------------i~~L~~L~~L~l~~~~~~~~~~~~~~ 312 (488)
+|+....++.|++|++..|. +..+|+. =..++.|+.|.+.+|...+
T Consensus 302 ip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd------- 373 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD------- 373 (1081)
T ss_pred CCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc-------
Confidence 55555555555555555444 2222221 1235567777777777664
Q ss_pred cCcccccCCCccccccccc--ccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCE
Q 038150 313 CRLESLKNLEHLQVCGISR--LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKE 390 (488)
Q Consensus 313 ~~~~~l~~L~~L~~L~~~~--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 390 (488)
..+..+.+..+|+.|.+.+ +..+++ ..+.++..|+.|.+++|++ ..+|..+..++.|++
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpa------s~~~kle~LeeL~LSGNkL-------------~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPA------SKLRKLEELEELNLSGNKL-------------TTLPDTVANLGRLHT 434 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCH------HHHhchHHhHHHhcccchh-------------hhhhHHHHhhhhhHH
Confidence 4566778889999988754 455664 6788899999999999998 777889999999999
Q ss_pred EEeccccCCCCCchHHHhccCCcEEeecCCCCCCC-CCC-CCCCCCcCeeeeccccc
Q 038150 391 LEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQ-LPP-LGKLQSLENLHIWRMES 445 (488)
Q Consensus 391 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~-l~~l~~L~~L~l~~~~~ 445 (488)
|...+|.+.. +| .+..++.|+.+|++.|..... +|. ... |+|++|++++|..
T Consensus 435 L~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 435 LRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 9999999887 88 788999999999998875443 333 222 8999999999984
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=5.2e-13 Score=138.76 Aligned_cols=225 Identities=19% Similarity=0.260 Sum_probs=160.4
Q ss_pred cceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCc
Q 038150 157 KVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLP 236 (488)
Q Consensus 157 ~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp 236 (488)
....+.+.......+|..+ .++++.|++.+| .+. .+|..+ +.+|++|++++|. +. .+|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N-~Lt--sLP~~l--~~nL~~L~Ls~N~------Lt---------sLP 236 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI--PEQITTLILDNN-ELK--SLPENL--QGNIKTLYANSNQ------LT---------SIP 236 (754)
T ss_pred CceEEEeCCCCcCcCCccc--ccCCcEEEecCC-CCC--cCChhh--ccCCCEEECCCCc------cc---------cCC
Confidence 3456777777777788655 368999999998 565 355544 3589999999998 55 444
Q ss_pred hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcc
Q 038150 237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLE 316 (488)
Q Consensus 237 ~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 316 (488)
..+. .+|+.|++++|. +..+|..+. .+|+.|++++|. +..+|..+. ++|++|++++|.+.. .+..+
T Consensus 237 ~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~-----LP~~l- 302 (754)
T PRK15370 237 ATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRT-----LPAHL- 302 (754)
T ss_pred hhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcccc-----Ccccc-
Confidence 4433 479999999976 678888765 589999999988 456887664 589999999987664 22211
Q ss_pred cccCCCccccccccc--ccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEec
Q 038150 317 SLKNLEHLQVCGISR--LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIE 394 (488)
Q Consensus 317 ~l~~L~~L~~L~~~~--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 394 (488)
. ++|+.|.+.. +..++. .+ .++|+.|++++|.++ .+|..+ +++|+.|+++
T Consensus 303 --p--~sL~~L~Ls~N~Lt~LP~-------~l--~~sL~~L~Ls~N~Lt-------------~LP~~l--~~sL~~L~Ls 354 (754)
T PRK15370 303 --P--SGITHLNVQSNSLTALPE-------TL--PPGLKTLEAGENALT-------------SLPASL--PPELQVLDVS 354 (754)
T ss_pred --h--hhHHHHHhcCCccccCCc-------cc--cccceeccccCCccc-------------cCChhh--cCcccEEECC
Confidence 1 2455555533 232221 11 267999999999874 344444 3699999999
Q ss_pred cccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCcc
Q 038150 395 YYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDE 452 (488)
Q Consensus 395 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~ 452 (488)
+|.+.. +|..+ .++|++|+|++|... .+|. +. ++|+.|++++|. +..+|..
T Consensus 355 ~N~L~~-LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~-L~~LP~s 406 (754)
T PRK15370 355 KNQITV-LPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNN-LVRLPES 406 (754)
T ss_pred CCCCCc-CChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCC-cccCchh
Confidence 999887 88765 379999999999855 5664 43 479999998876 6677654
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=9.2e-13 Score=136.21 Aligned_cols=114 Identities=21% Similarity=0.144 Sum_probs=65.2
Q ss_pred ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150 156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL 235 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l 235 (488)
..++.+.+..+....+|.. .++|++|++.+| .+.. +|. ..++|+.|++++|. +. .+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~Lts--LP~---lp~sL~~L~Ls~N~------L~---------~L 277 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTS--LPV---LPPGLLELSIFSNP------LT---------HL 277 (788)
T ss_pred cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCc--ccC---cccccceeeccCCc------hh---------hh
Confidence 3566666666666666642 466777777775 4442 332 23566777777776 33 23
Q ss_pred chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCC
Q 038150 236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAG 304 (488)
Q Consensus 236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~ 304 (488)
|.. ..+|+.|++++|. +..+|.. +++|++|++++|.+ ..+|... .+|+.|.+.+|.+.
T Consensus 278 p~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~lp---~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 278 PAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPALP---SELCKLWAYNNQLT 335 (788)
T ss_pred hhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCcc-ccCCCCc---ccccccccccCccc
Confidence 321 2456777787764 6666642 46778888887763 3455422 24555555555443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=2.8e-14 Score=115.95 Aligned_cols=150 Identities=20% Similarity=0.262 Sum_probs=89.7
Q ss_pred cccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
++...++++.++.+....+|..+..+.+|.+|.+.+| .+. .+|..+++++.||.|+++-|. ..
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie--~lp~~issl~klr~lnvgmnr------l~-------- 92 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIE--ELPTSISSLPKLRILNVGMNR------LN-------- 92 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhh--hcChhhhhchhhhheecchhh------hh--------
Confidence 4445666666666666666666667777777777665 555 355566777777777776666 33
Q ss_pred ccCchhhhhhccCcEeecCCCCCcc-cCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCc
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLK-ELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK 311 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~-~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~ 311 (488)
.+|..+|.++-|+.||+++|+..+ .+|..+-.|+.|+.|++++|. .+.+|..++++++||.|.+..|....
T Consensus 93 -~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~------ 164 (264)
T KOG0617|consen 93 -ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLS------ 164 (264)
T ss_pred -cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhh------
Confidence 455666666666666666654332 356556566666666666665 35556666666666666665554332
Q ss_pred ccCcccccCCCccccccc
Q 038150 312 ACRLESLKNLEHLQVCGI 329 (488)
Q Consensus 312 ~~~~~~l~~L~~L~~L~~ 329 (488)
...+++.|++|+.|.+
T Consensus 165 --lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 165 --LPKEIGDLTRLRELHI 180 (264)
T ss_pred --CcHHHHHHHHHHHHhc
Confidence 2334444445555544
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=1.6e-11 Score=127.13 Aligned_cols=214 Identities=23% Similarity=0.182 Sum_probs=147.6
Q ss_pred ccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150 154 LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL 233 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l 233 (488)
....++.+.++.+....+|.. .++|++|++.+| .+. .+|.. ...|+.|++++|. +.
T Consensus 240 lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~L~--~Lp~l---p~~L~~L~Ls~N~------Lt--------- 295 (788)
T PRK15387 240 LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-PLT--HLPAL---PSGLCKLWIFGNQ------LT--------- 295 (788)
T ss_pred CCCCCcEEEecCCccCcccCc---ccccceeeccCC-chh--hhhhc---hhhcCEEECcCCc------cc---------
Confidence 356788999999988888753 478999999997 555 35543 3568899999998 55
Q ss_pred cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150 234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC 313 (488)
Q Consensus 234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 313 (488)
.+|. .+++|++|++++|. +..+|.. ..+|+.|++++|. +..+|.. ..+|++|++++|.+.. .+.
T Consensus 296 ~LP~---~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~Ls~-----LP~ 359 (788)
T PRK15387 296 SLPV---LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQLAS-----LPT 359 (788)
T ss_pred cccc---cccccceeECCCCc-cccCCCC---cccccccccccCc-ccccccc---ccccceEecCCCccCC-----CCC
Confidence 3443 23679999999975 6667653 2457788888887 4456642 2578999998887765 332
Q ss_pred CcccccCCCccccccc--ccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEE
Q 038150 314 RLESLKNLEHLQVCGI--SRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKEL 391 (488)
Q Consensus 314 ~~~~l~~L~~L~~L~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 391 (488)
.. .+|..|.+ +.+..++. ...+|+.|++++|.+. .+|.. +++|+.|
T Consensus 360 lp------~~L~~L~Ls~N~L~~LP~----------l~~~L~~LdLs~N~Lt-------------~LP~l---~s~L~~L 407 (788)
T PRK15387 360 LP------SELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLT-------------SLPVL---PSELKEL 407 (788)
T ss_pred CC------cccceehhhccccccCcc----------cccccceEEecCCccc-------------CCCCc---ccCCCEE
Confidence 22 22333333 33333331 1256888999988874 22322 3578899
Q ss_pred EeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 392 EIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 392 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
++++|.+.. +|.. +.+|+.|++++|.+ +.+|. ++.+++|+.|++++|+
T Consensus 408 dLS~N~Lss-IP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 408 MVSGNRLTS-LPML---PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred EccCCcCCC-CCcc---hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCC
Confidence 999988887 7763 34678888888875 45776 8888999999998887
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=1.2e-12 Score=120.20 Aligned_cols=263 Identities=17% Similarity=0.144 Sum_probs=169.5
Q ss_pred cccccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCC-CcccccccCCcccccc
Q 038150 153 ALDEKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGG-SYHSTRLLTPEVPRNI 230 (488)
Q Consensus 153 ~~~~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~-~~~~~~~~~~~lp~~i 230 (488)
..+.....+.+..+.+..+|. .|+.+++||.|+++.| .+.. +-|..|..++.|-.|-+.+ |+ +.++|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~-I~p~AF~GL~~l~~Lvlyg~Nk------I~~l~k-- 133 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISF-IAPDAFKGLASLLSLVLYGNNK------ITDLPK-- 133 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhh-cChHhhhhhHhhhHHHhhcCCc------hhhhhh--
Confidence 445666789999999988875 5788999999999998 7777 7888899999988776666 66 775554
Q ss_pred cCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCC-CCCCcccccccCceeecCCCCCC-
Q 038150 231 EKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFHVSAGGGVD- 308 (488)
Q Consensus 231 ~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~~- 308 (488)
..+++|..|+.|.+.-|...-.....+..|++|..|.+.+|. ...++. .+..+.+++++++..+.+.....
T Consensus 134 ------~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 134 ------GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred ------hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcccccccc
Confidence 347789999999998876444455678999999999999987 566665 47888999999887765221100
Q ss_pred ----CCcccCcccccCCCccc-----ccccccc---------cCCC------C--hhhhhHhhcccCCCCCceeecccCc
Q 038150 309 ----GRKACRLESLKNLEHLQ-----VCGISRL---------GDVS------D--VGEAKRLELDKKKYLSSLTLWFDKE 362 (488)
Q Consensus 309 ----~~~~~~~~~l~~L~~L~-----~L~~~~~---------~~~~------~--~~~~~~~~l~~l~~L~~L~l~~~~~ 362 (488)
........+.+..+-.. .-.++.. +..+ + ...--...++.+++|++|++++|++
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 00000000011110000 0001000 0000 0 0000123477889999999999988
Q ss_pred hhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeec
Q 038150 363 EEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIW 441 (488)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~ 441 (488)
+.. -..++.....++.|.|..|.+...--..+..+.+|+.|++++|++..-.|. +..+.+|.+|.+-
T Consensus 287 ~~i------------~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 287 TRI------------EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred chh------------hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 633 345666677777777777766642233455677777777777776555554 6666677777665
Q ss_pred ccc
Q 038150 442 RME 444 (488)
Q Consensus 442 ~~~ 444 (488)
.++
T Consensus 355 ~Np 357 (498)
T KOG4237|consen 355 SNP 357 (498)
T ss_pred cCc
Confidence 544
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=3.3e-12 Score=117.32 Aligned_cols=257 Identities=16% Similarity=0.234 Sum_probs=163.3
Q ss_pred CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEe
Q 038150 169 ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKL 248 (488)
Q Consensus 169 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L 248 (488)
.++|..+. +....+.+..| .++. .++..|+.++.||.||||+|. +.. --|..+..|..|..|
T Consensus 59 ~eVP~~LP--~~tveirLdqN-~I~~-iP~~aF~~l~~LRrLdLS~N~------Is~--------I~p~AF~GL~~l~~L 120 (498)
T KOG4237|consen 59 TEVPANLP--PETVEIRLDQN-QISS-IPPGAFKTLHRLRRLDLSKNN------ISF--------IAPDAFKGLASLLSL 120 (498)
T ss_pred ccCcccCC--CcceEEEeccC-Cccc-CChhhccchhhhceecccccc------hhh--------cChHhhhhhHhhhHH
Confidence 55554332 45567778776 6776 778889999999999999999 443 346788899999999
Q ss_pred ecCCCCCcccCchh-hccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccc
Q 038150 249 DISDCFNLKELPEG-IGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVC 327 (488)
Q Consensus 249 ~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 327 (488)
-+.+++.+..+|.+ ++.|..|+.|.+.-|.........+..|++|..|.+.+|.+..- .. ..+..+..++.+
T Consensus 121 vlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i-----~~--~tf~~l~~i~tl 193 (498)
T KOG4237|consen 121 VLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI-----CK--GTFQGLAAIKTL 193 (498)
T ss_pred HhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhh-----cc--ccccchhccchH
Confidence 88887779999975 69999999999988874444445688999999999988865541 11 112223333332
Q ss_pred ccc--------cccCCCChhhhhHhhcccCCCCCceeecccCchhh-----------hhh-hccccc-hHHHh-hhCCCC
Q 038150 328 GIS--------RLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEE-----------EGE-RRKNED-NQLLL-EALRPP 385 (488)
Q Consensus 328 ~~~--------~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------~~~-~~~~~~-~~~~~-~~~~~~ 385 (488)
.+. ++....+.....+..++.........+.+.++... .+. ....+. ....| .-+..+
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence 221 11111111111112222222222222222211100 000 000000 01111 226678
Q ss_pred CCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCcc
Q 038150 386 LNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDE 452 (488)
Q Consensus 386 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~ 452 (488)
++|++|++++|.+...-+.|+.....++.|.+..|.+ ..+.. +..+..|+.|++.++. ++.+..+
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l-~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~ 340 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL-EFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPG 340 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH-HHHHHHhhhccccceeeeecCCe-eEEEecc
Confidence 9999999999999986688999999999999999874 33332 7789999999999987 6666443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1.9e-11 Score=117.35 Aligned_cols=197 Identities=24% Similarity=0.279 Sum_probs=132.3
Q ss_pred cccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
+........+++.+....+|..+..|..|..+.+..| .+. .+|..+.++..|.+|||+.|. ..
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r--~ip~~i~~L~~lt~l~ls~Nq------lS-------- 134 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIR--TIPEAICNLEALTFLDLSSNQ------LS-------- 134 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cce--ecchhhhhhhHHHHhhhccch------hh--------
Confidence 4444445566666666777777777777777777665 333 466667777777777777777 33
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA 312 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 312 (488)
.+|..++.|+ |+.|.+++|+ ++.+|..++.+.+|.+|+.+.|. +..+|..++.+.+|+.|.+..|.... .
T Consensus 135 -~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~-----l- 204 (722)
T KOG0532|consen 135 -HLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLED-----L- 204 (722)
T ss_pred -cCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhh-----C-
Confidence 5566666665 6777777743 67777777777777777777776 55667777777777777766655433 1
Q ss_pred cCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150 313 CRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE 392 (488)
Q Consensus 313 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 392 (488)
+..+.. =.|..|++++|++ ..+|-.+..|+.|+.|.
T Consensus 205 ------------------------------p~El~~-LpLi~lDfScNki-------------s~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 205 ------------------------------PEELCS-LPLIRLDFSCNKI-------------SYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred ------------------------------CHHHhC-CceeeeecccCce-------------eecchhhhhhhhheeee
Confidence 122332 2377888888887 66788888888999999
Q ss_pred eccccCCCCCchHHH---hccCCcEEeecCCC
Q 038150 393 IEYYRGNTVFPSWMT---SLTNLKSLDLSSCE 421 (488)
Q Consensus 393 l~~~~~~~~lp~~~~---~l~~L~~L~l~~~~ 421 (488)
|.+|.+.. .|..|. ...=.++|++.-|.
T Consensus 241 LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 241 LENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 98888876 666654 34445677777774
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=5.2e-11 Score=114.45 Aligned_cols=210 Identities=22% Similarity=0.249 Sum_probs=157.2
Q ss_pred eEEEEecCCcCcccc--ccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchh
Q 038150 161 LMLIFSKAASLPIST--LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPET 238 (488)
Q Consensus 161 l~l~~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~ 238 (488)
+.+.+.....||..- ..+..-...+++.| .+. .+|..+..|..|..+.|..|. +. .+|..
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~--elp~~~~~f~~Le~liLy~n~------~r---------~ip~~ 116 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFS--ELPEEACAFVSLESLILYHNC------IR---------TIPEA 116 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhcccc-ccc--cCchHHHHHHHHHHHHHHhcc------ce---------ecchh
Confidence 445555555565332 23444456677776 555 467778888888888888887 44 67888
Q ss_pred hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150 239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL 318 (488)
Q Consensus 239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l 318 (488)
+++|..|.+|||+.|. +..+|..++.|+ |+.|-+++|+ .+.+|.+|+.+..|..|+.+.|.+..
T Consensus 117 i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~s------------- 180 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQS------------- 180 (722)
T ss_pred hhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhh-------------
Confidence 8999999999999964 788888888765 8888888887 67889889988888888887775443
Q ss_pred cCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC
Q 038150 319 KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG 398 (488)
Q Consensus 319 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 398 (488)
++..+..+..|+.|.+..|+. ..+|+.+..+ .|.+|+++.|.+
T Consensus 181 -----------------------lpsql~~l~slr~l~vrRn~l-------------~~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 181 -----------------------LPSQLGYLTSLRDLNVRRNHL-------------EDLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred -----------------------chHHhhhHHHHHHHHHhhhhh-------------hhCCHHHhCC-ceeeeecccCce
Confidence 235566677777788888876 6677888755 599999999999
Q ss_pred CCCCchHHHhccCCcEEeecCCCCCCCCCC----CCCCCCcCeeeeccc
Q 038150 399 NTVFPSWMTSLTNLKSLDLSSCENCEQLPP----LGKLQSLENLHIWRM 443 (488)
Q Consensus 399 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~----l~~l~~L~~L~l~~~ 443 (488)
.. +|..+..+..|++|.|.+|+ ++..|. .|..-=.++|++.-|
T Consensus 224 s~-iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 SY-LPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ee-cchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 98 99999999999999999998 555554 344455567777666
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.97 E-value=2.5e-10 Score=103.70 Aligned_cols=248 Identities=17% Similarity=0.122 Sum_probs=170.7
Q ss_pred ccccccCcceecccccchhhh---hhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCch-------hhhhhc
Q 038150 174 STLRVKRMRTLLINDHSLLNA---AILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE-------TLCELY 243 (488)
Q Consensus 174 ~~~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~-------~i~~L~ 243 (488)
....+..+..++++||+ ++. ..+...+.+.+.||..++|... .+.+-. .+|+ .+-..+
T Consensus 25 ~~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~f------tGR~~~-----Ei~e~L~~l~~aL~~~~ 92 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMF------TGRLKD-----EIPEALKMLSKALLGCP 92 (382)
T ss_pred HhcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhh------cCCcHH-----HHHHHHHHHHHHHhcCC
Confidence 34457788999999983 332 1355567888899999998764 443222 3343 344567
Q ss_pred cCcEeecCCCCCcccCchh----hccccccceeeccCCCCCCC-------------CCCCCCCcccccccCceeecCCCC
Q 038150 244 NLEKLDISDCFNLKELPEG----IGKLINVKHLLNRGTNSLRY-------------MPVGIGRLTGLRTLGEFHVSAGGG 306 (488)
Q Consensus 244 ~L~~L~l~~~~~~~~lp~~----l~~L~~L~~L~l~~~~~~~~-------------lp~~i~~L~~L~~L~l~~~~~~~~ 306 (488)
+|++|+||+|-+-..-++. +.+...|+||++.+|.+... .-+-++.-+.|+++....|+..+.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 8999999998755444443 45678999999999874311 112245567899998888877663
Q ss_pred CCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCC
Q 038150 307 VDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPL 386 (488)
Q Consensus 307 ~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (488)
. .......+...+.|+.+.+...+.-+....++...+..+++|+.|++..|.++... ...+...++.++
T Consensus 173 g---a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg--------s~~LakaL~s~~ 241 (382)
T KOG1909|consen 173 G---ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG--------SVALAKALSSWP 241 (382)
T ss_pred c---HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH--------HHHHHHHhcccc
Confidence 2 11222334445666666665554444444678889999999999999999876442 266667788889
Q ss_pred CCCEEEeccccCCCCCchHHH-----hccCCcEEeecCCCCCCCC----C-CCCCCCCcCeeeecccc
Q 038150 387 NLKELEIEYYRGNTVFPSWMT-----SLTNLKSLDLSSCENCEQL----P-PLGKLQSLENLHIWRME 444 (488)
Q Consensus 387 ~L~~L~l~~~~~~~~lp~~~~-----~l~~L~~L~l~~~~~~~~~----~-~l~~l~~L~~L~l~~~~ 444 (488)
+|+.|.++.|.....-...+. ..|+|+.|.+.+|.+..+- . .+...|.|+.|+|++|.
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 999999999987653222222 5799999999999876642 1 25568999999999997
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=1.6e-09 Score=96.40 Aligned_cols=84 Identities=26% Similarity=0.163 Sum_probs=39.9
Q ss_pred cccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCC-
Q 038150 346 LDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCE- 424 (488)
Q Consensus 346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~- 424 (488)
+..+.+|+.|++++|.+ ..+-.|-..+.|.++|.+++|.+.+ ...++.+-+|..|++++|++.+
T Consensus 325 La~L~~L~~LDLS~N~L-------------s~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLL-------------AECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred hhhcccceEeecccchh-------------HhhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhH
Confidence 44455555555555544 2222333344455555555554442 2224445555555555554322
Q ss_pred -CCCCCCCCCCcCeeeecccc
Q 038150 425 -QLPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 425 -~~~~l~~l~~L~~L~l~~~~ 444 (488)
.+-.+|++|.|+++.+.+++
T Consensus 390 deV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 390 DEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred HHhcccccccHHHHHhhcCCC
Confidence 12225555555555555555
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.84 E-value=3.2e-10 Score=102.95 Aligned_cols=257 Identities=21% Similarity=0.177 Sum_probs=170.3
Q ss_pred HHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc----ccCchhh-------cc
Q 038150 197 LEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL----KELPEGI-------GK 265 (488)
Q Consensus 197 ~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~----~~lp~~l-------~~ 265 (488)
+-+.+..+..+..++||+|.+ ...-.. .+-+.+.+.+.|+.-++++- +. .++|..+ -.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~-----G~EAa~-----~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~ 90 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTF-----GTEAAR-----AIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLG 90 (382)
T ss_pred HHHHhcccCceEEEeccCCch-----hHHHHH-----HHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhc
Confidence 444578889999999999985 322111 22344566778888888762 22 2355443 34
Q ss_pred ccccceeeccCCCCCCCCCCC----CCCcccccccCceeecCCCCCCCCcccCc------ccccCCCcccccccccccCC
Q 038150 266 LINVKHLLNRGTNSLRYMPVG----IGRLTGLRTLGEFHVSAGGGVDGRKACRL------ESLKNLEHLQVCGISRLGDV 335 (488)
Q Consensus 266 L~~L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~l~~~~~~~~~~~~~~~~~------~~l~~L~~L~~L~~~~~~~~ 335 (488)
.++|+.|++++|-+....+++ |.+.++|++|.+.+|.+...........+ ...++-+.|+.+.+....-.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 569999999999876555544 46789999999988876542211112211 22344566777666433333
Q ss_pred CChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC----CchHHHhccC
Q 038150 336 SDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV----FPSWMTSLTN 411 (488)
Q Consensus 336 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~ 411 (488)
.....++...+..++.|+.+.+..|.+... ....+...+..+++|+.|+|..|.+... +...+..+++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~e--------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPE--------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCc--------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 344556667788889999999999987532 2256677888999999999999987642 2233446789
Q ss_pred CcEEeecCCCCCCCC----C-C-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150 412 LKSLDLSSCENCEQL----P-P-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 412 L~~L~l~~~~~~~~~----~-~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
|+.|.+++|.....- . . -...|+|+.|.+.+|. ++.-....+... ....|.|+.|.+.+|.
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~------------~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAAC------------MAEKPDLEKLNLNGNR 309 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHH------------HhcchhhHHhcCCccc
Confidence 999999999865431 1 1 3458999999999987 333322222222 4458999999998874
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.4e-09 Score=101.59 Aligned_cols=201 Identities=14% Similarity=0.055 Sum_probs=124.5
Q ss_pred cCCCCCCCcccccccceeeEEEEecCCcCcc--ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCccccc
Q 038150 143 NGSEEPNATNALDEKVRHLMLIFSKAASLPI--STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTR 220 (488)
Q Consensus 143 ~g~~~~~~t~~~~~~vr~l~l~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~ 220 (488)
+||+.+.+...+.+++|.+++..+.....+. ....|+++|.|++++|-......+-.....+++|+.|+|+.|.+.+-
T Consensus 108 iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 108 IGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred ecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 4555555555677888999998887755552 56679999999999983333334556678999999999999985211
Q ss_pred ccCCcccccccCccCchhhhhhccCcEeecCCCCCccc-CchhhccccccceeeccCCCCCCCCCCCCCCcccccccCce
Q 038150 221 LLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKE-LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF 299 (488)
Q Consensus 221 ~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 299 (488)
.+ . ..-..+.+|+.|.++.|..... +-..+..+++|..|++..|.....-......+..|++|++.
T Consensus 188 --~~---------s--~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 188 --IS---------S--NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred --cc---------c--cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 11 0 1123688999999999975432 32334567899999999885222222234457889999999
Q ss_pred eecCCCCCCCCcccCcccccCCCccccccccccc--CCCChhhhhHhhcccCCCCCceeecccCc
Q 038150 300 HVSAGGGVDGRKACRLESLKNLEHLQVCGISRLG--DVSDVGEAKRLELDKKKYLSSLTLWFDKE 362 (488)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 362 (488)
+|.... .......+.++.|+.|.+..++ .+....-........+++|+.|.+..|++
T Consensus 255 ~N~li~------~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 255 NNNLID------FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred CCcccc------cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 887665 2222344455555555543322 11111111112233455666666666654
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.74 E-value=5.6e-09 Score=103.27 Aligned_cols=107 Identities=27% Similarity=0.371 Sum_probs=67.9
Q ss_pred ccccCcceecccccchhhhhhHHHHHhcCC-ccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCC
Q 038150 176 LRVKRMRTLLINDHSLLNAAILEELFRELT-SLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCF 254 (488)
Q Consensus 176 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~ 254 (488)
..++.+..|.+.++ .+. .++.....+. +|+.|+++++. +. .+|..++.+++|+.|++++|.
T Consensus 113 ~~~~~l~~L~l~~n-~i~--~i~~~~~~~~~nL~~L~l~~N~------i~---------~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 113 LELTNLTSLDLDNN-NIT--DIPPLIGLLKSNLKELDLSDNK------IE---------SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred hcccceeEEecCCc-ccc--cCccccccchhhcccccccccc------hh---------hhhhhhhccccccccccCCch
Confidence 34466777777665 343 2444344553 77777777776 44 455566777777777777754
Q ss_pred CcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeec
Q 038150 255 NLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS 302 (488)
Q Consensus 255 ~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 302 (488)
+..+|...+.+++|+.|++++|. ...+|..++.+..|++|.+..+.
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc
Confidence 66666666677777777777776 45566655556667777766663
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=7.7e-09 Score=102.31 Aligned_cols=198 Identities=28% Similarity=0.293 Sum_probs=142.9
Q ss_pred eecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhc-cCcEeecCCCCCcccCch
Q 038150 183 TLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELY-NLEKLDISDCFNLKELPE 261 (488)
Q Consensus 183 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~-~L~~L~l~~~~~~~~lp~ 261 (488)
.+....+ .+.. ... .+..+..+..|++.++. +. .+|..++.+. +|+.|++++|. +..+|.
T Consensus 97 ~l~~~~~-~~~~-~~~-~~~~~~~l~~L~l~~n~------i~---------~i~~~~~~~~~nL~~L~l~~N~-i~~l~~ 157 (394)
T COG4886 97 SLDLNLN-RLRS-NIS-ELLELTNLTSLDLDNNN------IT---------DIPPLIGLLKSNLKELDLSDNK-IESLPS 157 (394)
T ss_pred eeecccc-cccc-Cch-hhhcccceeEEecCCcc------cc---------cCccccccchhhcccccccccc-hhhhhh
Confidence 5666665 3311 222 25667899999999998 66 6666777775 99999999965 888888
Q ss_pred hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhh
Q 038150 262 GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEA 341 (488)
Q Consensus 262 ~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~ 341 (488)
.++.+++|+.|++++|. +..+|...+.+++|+.|+++++.+.. .+..+ ..+..|..+.+..-..+.
T Consensus 158 ~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~i~~-----l~~~~---~~~~~L~~l~~~~N~~~~----- 223 (394)
T COG4886 158 PLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKISD-----LPPEI---ELLSALEELDLSNNSIIE----- 223 (394)
T ss_pred hhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCCcccc-----Cchhh---hhhhhhhhhhhcCCccee-----
Confidence 89999999999999998 67778777789999999999987665 22222 233445555554332111
Q ss_pred hHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCC
Q 038150 342 KRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCE 421 (488)
Q Consensus 342 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 421 (488)
....+.++.++..+.+..+++ ..++..++.+++|+.|.+++|.+.. ++. ++.+.+|+.|+++++.
T Consensus 224 ~~~~~~~~~~l~~l~l~~n~~-------------~~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 224 LLSSLSNLKNLSGLELSNNKL-------------EDLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred cchhhhhcccccccccCCcee-------------eeccchhccccccceeccccccccc-ccc-ccccCccCEEeccCcc
Confidence 224566677777777777765 3335677788888999988888887 655 7788888999988888
Q ss_pred CCCCCCC
Q 038150 422 NCEQLPP 428 (488)
Q Consensus 422 ~~~~~~~ 428 (488)
....++.
T Consensus 289 ~~~~~~~ 295 (394)
T COG4886 289 LSNALPL 295 (394)
T ss_pred ccccchh
Confidence 7666554
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.6e-10 Score=99.18 Aligned_cols=182 Identities=19% Similarity=0.147 Sum_probs=96.3
Q ss_pred ccceeeccCCCCCCC-CCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhc
Q 038150 268 NVKHLLNRGTNSLRY-MPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLEL 346 (488)
Q Consensus 268 ~L~~L~l~~~~~~~~-lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l 346 (488)
.|+||+++...+... +-.-+..+.+|+.|.+.++...+ .....+.+-.+|+.++++.+.++.+. +....+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-------~I~~~iAkN~~L~~lnlsm~sG~t~n--~~~ll~ 256 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-------PIVNTIAKNSNLVRLNLSMCSGFTEN--ALQLLL 256 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-------HHHHHHhccccceeeccccccccchh--HHHHHH
Confidence 356666655432211 11113445556666665555443 22334444555666666665555432 334456
Q ss_pred ccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCC---CCCchHHHhccCCcEEeecCCCCC
Q 038150 347 DKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN---TVFPSWMTSLTNLKSLDLSSCENC 423 (488)
Q Consensus 347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~lp~~~~~l~~L~~L~l~~~~~~ 423 (488)
.+++.|..|.++||.+.... ...+...++ ++|+.|.|+||.-. ..+..-...+|+|.+|++++|..+
T Consensus 257 ~scs~L~~LNlsWc~l~~~~--------Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEK--------VTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred HhhhhHhhcCchHhhccchh--------hhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 66777777777777654221 011222222 36777777775322 112222235677777777777665
Q ss_pred CCC--CCCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCccccccccccc
Q 038150 424 EQL--PPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVL 484 (488)
Q Consensus 424 ~~~--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 484 (488)
+.- ..+-+|+.|++|.++.|. .++++.+ .. .+..|.|.+|++.+|
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY---~i~p~~~-~~------------l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCY---DIIPETL-LE------------LNSKPSLVYLDVFGC 373 (419)
T ss_pred CchHHHHHHhcchheeeehhhhc---CCChHHe-ee------------eccCcceEEEEeccc
Confidence 541 125667777777777776 3333322 11 456777777777765
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=2.2e-09 Score=95.55 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=21.8
Q ss_pred hhCCCCCCCCEEEeccccCCCCC--chHHHhccCCcEEeecCCCC
Q 038150 380 EALRPPLNLKELEIEYYRGNTVF--PSWMTSLTNLKSLDLSSCEN 422 (488)
Q Consensus 380 ~~~~~~~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~ 422 (488)
..+..+-+|..|++++|++.. + ...||++|.|.++.+.+|+.
T Consensus 368 SGL~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCc
Confidence 344445555555555555543 2 22355555566555555553
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=8.9e-09 Score=96.37 Aligned_cols=210 Identities=16% Similarity=0.043 Sum_probs=109.5
Q ss_pred HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCccc--CchhhccccccceeeccCCC
Q 038150 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKE--LPEGIGKLINVKHLLNRGTN 278 (488)
Q Consensus 201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~--lp~~l~~L~~L~~L~l~~~~ 278 (488)
-+++..||...|..+. ++..+. . .....|++++.|||+.|-+... +-.-...|++|+.|+++.|.
T Consensus 117 Qsn~kkL~~IsLdn~~------V~~~~~-----~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR------VEDAGI-----E--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhhHHhhhheeecCcc------ccccch-----h--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence 4678889999998888 553221 0 3566788899999988642222 22344677888888888887
Q ss_pred CCCCCCCC-CCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceee
Q 038150 279 SLRYMPVG-IGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTL 357 (488)
Q Consensus 279 ~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 357 (488)
+..-.-.. -.-+++|+.|.+..|.+.. .....-+...++|..|.+...+++.. .......++.|+.|+|
T Consensus 184 l~~~~~s~~~~~l~~lK~L~l~~CGls~------k~V~~~~~~fPsl~~L~L~~N~~~~~----~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 184 LSNFISSNTTLLLSHLKQLVLNSCGLSW------KDVQWILLTFPSLEVLYLEANEIILI----KATSTKILQTLQELDL 253 (505)
T ss_pred ccCCccccchhhhhhhheEEeccCCCCH------HHHHHHHHhCCcHHHhhhhcccccce----ecchhhhhhHHhhccc
Confidence 43221111 1245667777776665543 11222233445555554433221110 0012223455666666
Q ss_pred cccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC-CchH-----HHhccCCcEEeecCCCC--CCCCCCC
Q 038150 358 WFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV-FPSW-----MTSLTNLKSLDLSSCEN--CEQLPPL 429 (488)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-lp~~-----~~~l~~L~~L~l~~~~~--~~~~~~l 429 (488)
++|++-. .....-.+.++.|+.|.++.+.+... .|+. ...+++|++|.+..|+. ...+-.+
T Consensus 254 s~N~li~-----------~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 254 SNNNLID-----------FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred cCCcccc-----------cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence 6665421 11112344556666666666554431 2222 22466666666666664 2222234
Q ss_pred CCCCCcCeeeecccc
Q 038150 430 GKLQSLENLHIWRME 444 (488)
Q Consensus 430 ~~l~~L~~L~l~~~~ 444 (488)
..+++|+.|.+..++
T Consensus 323 ~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 323 RTLENLKHLRITLNY 337 (505)
T ss_pred hccchhhhhhccccc
Confidence 445556666554443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=1.2e-08 Score=86.88 Aligned_cols=106 Identities=23% Similarity=0.296 Sum_probs=27.7
Q ss_pred cccCcceecccccchhhhhhHHHHHh-cCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCC
Q 038150 177 RVKRMRTLLINDHSLLNAAILEELFR-ELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255 (488)
Q Consensus 177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~ 255 (488)
+..++|.|++.++ .+ . .+ +.+. .+.+|++|+|++|. +.. + +.+..+++|++|++++|.
T Consensus 17 n~~~~~~L~L~~n-~I-~-~I-e~L~~~l~~L~~L~Ls~N~------I~~---------l-~~l~~L~~L~~L~L~~N~- 75 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QI-S-TI-ENLGATLDKLEVLDLSNNQ------ITK---------L-EGLPGLPRLKTLDLSNNR- 75 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--------S------------TT----TT--EEE--SS--
T ss_pred ccccccccccccc-cc-c-cc-cchhhhhcCCCEEECCCCC------Ccc---------c-cCccChhhhhhcccCCCC-
Confidence 4445666666665 11 1 11 2233 34566666666666 332 1 234556666666666654
Q ss_pred cccCchhh-ccccccceeeccCCCCCCCCC--CCCCCcccccccCceeecCC
Q 038150 256 LKELPEGI-GKLINVKHLLNRGTNSLRYMP--VGIGRLTGLRTLGEFHVSAG 304 (488)
Q Consensus 256 ~~~lp~~l-~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~ 304 (488)
++.++..+ ..+++|++|++++|.+ ..+- ..++.+++|+.|++.+|.++
T Consensus 76 I~~i~~~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 76 ISSISEGLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCccccchHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCccc
Confidence 55554444 3466666666666653 2211 22445556666666555443
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=8.7e-08 Score=99.55 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=35.5
Q ss_pred cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCC
Q 038150 234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAG 304 (488)
Q Consensus 234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~ 304 (488)
.+|..++.+++|++|+|++|...+.+|..++.+++|+.|++++|.+...+|..+++|++|++|++.+|.+.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 34444555555555555554433445555555555555555555544444555555555555555544443
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=1.1e-07 Score=80.90 Aligned_cols=81 Identities=26% Similarity=0.261 Sum_probs=35.1
Q ss_pred CCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHH-HhccCCcEEeecCCCCCC--C
Q 038150 349 KKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWM-TSLTNLKSLDLSSCENCE--Q 425 (488)
Q Consensus 349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~--~ 425 (488)
+.+|+.|++++|.+... +.+..+++|+.|.+++|.+.. ++..+ ..+|+|++|++++|.... +
T Consensus 41 l~~L~~L~Ls~N~I~~l--------------~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~ 105 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--------------EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNE 105 (175)
T ss_dssp -TT--EEE-TTS--S----------------TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCC
T ss_pred hcCCCEEECCCCCCccc--------------cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHH
Confidence 56777888888876422 456667888888888888887 65545 368888888888887433 2
Q ss_pred CCCCCCCCCcCeeeecccc
Q 038150 426 LPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 426 ~~~l~~l~~L~~L~l~~~~ 444 (488)
+..+..+|+|+.|++.+||
T Consensus 106 l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 106 LEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp CGGGGG-TT--EEE-TT-G
T ss_pred hHHHHcCCCcceeeccCCc
Confidence 3336778888888888887
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.48 E-value=7.3e-09 Score=96.41 Aligned_cols=146 Identities=21% Similarity=0.088 Sum_probs=81.4
Q ss_pred CcccccccCceeecCCCCCCCCcccCccccc-CCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhh
Q 038150 289 RLTGLRTLGEFHVSAGGGVDGRKACRLESLK-NLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEG 367 (488)
Q Consensus 289 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (488)
.+..||.|+..++...+ ...+..|+ +..+|+.+.+..+..+.+.. +...-.++.+|+.+++..+....+
T Consensus 292 ~c~~lq~l~~s~~t~~~------d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--ft~l~rn~~~Le~l~~e~~~~~~d-- 361 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDIT------DEVLWALGQHCHNLQVLELSGCQQFSDRG--FTMLGRNCPHLERLDLEECGLITD-- 361 (483)
T ss_pred hhhHhhhhcccCCCCCc------hHHHHHHhcCCCceEEEeccccchhhhhh--hhhhhcCChhhhhhcccccceehh--
Confidence 35566666665554332 23333332 24566666665555433211 112223466777777766654322
Q ss_pred hhccccchHHHhhhCCCCCCCCEEEeccccCCCCC-----chHHHhccCCcEEeecCCCCCCCCC--CCCCCCCcCeeee
Q 038150 368 ERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF-----PSWMTSLTNLKSLDLSSCENCEQLP--PLGKLQSLENLHI 440 (488)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-----p~~~~~l~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l 440 (488)
..+.+--.+++.|+.|.++.|...++. ...-.....|..+.+++|+...+-. .+..+++|+.+++
T Consensus 362 --------~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 362 --------GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred --------hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 233344456778888888877554322 1111245678888888888666532 2677788888888
Q ss_pred cccccceeeCcc
Q 038150 441 WRMESVKRVGDE 452 (488)
Q Consensus 441 ~~~~~l~~~~~~ 452 (488)
.+|..+..-+..
T Consensus 434 ~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 434 IDCQDVTKEAIS 445 (483)
T ss_pred echhhhhhhhhH
Confidence 888765554433
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.4e-08 Score=90.50 Aligned_cols=183 Identities=19% Similarity=0.101 Sum_probs=107.7
Q ss_pred cCcEeecCCCCCcc--cCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCc-ccccC
Q 038150 244 NLEKLDISDCFNLK--ELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL-ESLKN 320 (488)
Q Consensus 244 ~L~~L~l~~~~~~~--~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~ 320 (488)
.|++|||+... ++ .+-.-+..+.+|+.|.+.++.....+...|.+-.+|+.|+++.+.--. ...+ --+.+
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t------~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT------ENALQLLLSS 258 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc------hhHHHHHHHh
Confidence 46777777632 32 233344666777777777776555555556667777777776654322 1111 12456
Q ss_pred CCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150 321 LEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT 400 (488)
Q Consensus 321 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 400 (488)
++.|..|++.|+.-..+...+....+ -++|..|.++++.-.-. ...+.--...+++|.+|+|+.|....
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~---------~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQ---------KSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhh---------hhHHHHHHHhCCceeeeccccccccC
Confidence 66777777777765444333333322 35678888887752100 01112223457888888888865442
Q ss_pred -CCchHHHhccCCcEEeecCCCCCCC--CCCCCCCCCcCeeeecccc
Q 038150 401 -VFPSWMTSLTNLKSLDLSSCENCEQ--LPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 401 -~lp~~~~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~ 444 (488)
..-..+..|+.|++|.++.|..... +..+...|+|.+|++.+|-
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 2333455788888888888874432 2236778888888888773
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=4.8e-07 Score=94.05 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=90.9
Q ss_pred CcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccC
Q 038150 180 RMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKEL 259 (488)
Q Consensus 180 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~l 259 (488)
.++.|++.++ .+.+ .+|..+.++++|+.|+|++|.+ .+ .+|..++.+++|++|++++|.....+
T Consensus 419 ~v~~L~L~~n-~L~g-~ip~~i~~L~~L~~L~Ls~N~l-----~g---------~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 419 FIDGLGLDNQ-GLRG-FIPNDISKLRHLQSINLSGNSI-----RG---------NIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred EEEEEECCCC-Cccc-cCCHHHhCCCCCCEEECCCCcc-----cC---------cCChHHhCCCCCCEEECCCCCCCCCC
Confidence 4788999987 5665 6777899999999999999986 55 67888999999999999999877889
Q ss_pred chhhccccccceeeccCCCCCCCCCCCCCCc-ccccccCceeec
Q 038150 260 PEGIGKLINVKHLLNRGTNSLRYMPVGIGRL-TGLRTLGEFHVS 302 (488)
Q Consensus 260 p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L-~~L~~L~l~~~~ 302 (488)
|..++++++|++|++++|.+.+.+|..++.+ .++..+++.+|.
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999999999999999888999887754 466677766664
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.37 E-value=5.9e-08 Score=90.51 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=44.1
Q ss_pred cceeeEEEEecCCcC---ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150 157 KVRHLMLIFSKAASL---PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL 233 (488)
Q Consensus 157 ~vr~l~l~~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l 233 (488)
.++.+++.++..... -....+++++..|.+.++..++....-..-..++.|++|+|..|.. +.+.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~-----iT~~------- 206 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS-----ITDV------- 206 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch-----hHHH-------
Confidence 344555555544221 1123456666666666665555534444444566666666666542 2210
Q ss_pred cCchhhhhhccCcEeecCCCCCcc
Q 038150 234 VLPETLCELYNLEKLDISDCFNLK 257 (488)
Q Consensus 234 ~lp~~i~~L~~L~~L~l~~~~~~~ 257 (488)
.+-.-...+++|++|+++.|..+.
T Consensus 207 ~Lk~la~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 207 SLKYLAEGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred HHHHHHHhhhhHHHhhhccCchhh
Confidence 111122345666666666665443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=7e-07 Score=88.63 Aligned_cols=108 Identities=21% Similarity=0.266 Sum_probs=60.2
Q ss_pred cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCC
Q 038150 175 TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCF 254 (488)
Q Consensus 175 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~ 254 (488)
+..+.++..|++.+| .+.. +...+..+++|++|++++|. +.++ ..+..+..|+.|++.+|.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N~------I~~i----------~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFNK------ITKL----------EGLSTLTLLKELNLSGNL 151 (414)
T ss_pred cccccceeeeecccc-chhh--cccchhhhhcchheeccccc------cccc----------cchhhccchhhheeccCc
Confidence 455666677777665 4432 32224566677777777776 3322 345556666777777754
Q ss_pred CcccCchhhccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecCC
Q 038150 255 NLKELPEGIGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAG 304 (488)
Q Consensus 255 ~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~ 304 (488)
+..+ ..+..+++|+.+++++|.. ..+... +..+.+|+.+.+..+.+.
T Consensus 152 -i~~~-~~~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 152 -ISDI-SGLESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred -chhc-cCCccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCchh
Confidence 4444 2445566666677766653 222221 355666666666655443
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=3.1e-06 Score=58.89 Aligned_cols=59 Identities=25% Similarity=0.359 Sum_probs=41.5
Q ss_pred CCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 386 LNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 386 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
++|+.|++++|.+...-+.++..+++|++|++++|....-.+. +..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4677888888877762335677788888888887775433333 7778888888887775
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=3.9e-06 Score=87.21 Aligned_cols=138 Identities=25% Similarity=0.171 Sum_probs=71.4
Q ss_pred CccceeecCCCcccccccCCcccccccCccCchhhh-hhccCcEeecCCCCCc-ccCchhhccccccceeeccCCCCCCC
Q 038150 205 TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC-ELYNLEKLDISDCFNL-KELPEGIGKLINVKHLLNRGTNSLRY 282 (488)
Q Consensus 205 ~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~-~L~~L~~L~l~~~~~~-~~lp~~l~~L~~L~~L~l~~~~~~~~ 282 (488)
.+|++||++|... +.. .-|..+| .||+|+.|.+++-... .++-.-..++++|..|++++++ +..
T Consensus 122 ~nL~~LdI~G~~~----~s~---------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~n 187 (699)
T KOG3665|consen 122 QNLQHLDISGSEL----FSN---------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISN 187 (699)
T ss_pred HhhhhcCccccch----hhc---------cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccC
Confidence 4566777766542 111 2233344 3566777766663221 1222334566677777777765 222
Q ss_pred CCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCCh--hhhhHhhcccCCCCCceeeccc
Q 038150 283 MPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDV--GEAKRLELDKKKYLSSLTLWFD 360 (488)
Q Consensus 283 lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~ 360 (488)
+ .++++|++|++|.+.+-.+.. ...+.++-+|++|+.|+++.-...... .....+.-..+++|+.|+.++.
T Consensus 188 l-~GIS~LknLq~L~mrnLe~e~------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 188 L-SGISRLKNLQVLSMRNLEFES------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred c-HHHhccccHHHHhccCCCCCc------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 2 566777777777665554443 334555666666666666544332221 1122233334566666666665
Q ss_pred Cch
Q 038150 361 KEE 363 (488)
Q Consensus 361 ~~~ 363 (488)
.+.
T Consensus 261 di~ 263 (699)
T KOG3665|consen 261 DIN 263 (699)
T ss_pred chh
Confidence 543
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.98 E-value=5.9e-06 Score=57.46 Aligned_cols=59 Identities=31% Similarity=0.484 Sum_probs=34.5
Q ss_pred CccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCC
Q 038150 205 TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTN 278 (488)
Q Consensus 205 ~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~ 278 (488)
++|++|++++|. +..+|. ..+.++++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~------l~~i~~--------~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK------LTEIPP--------DSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST------ESEECT--------TTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC------CCccCH--------HHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 356677777766 442221 245566677777777654 444443 45666777777766654
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.94 E-value=4.5e-06 Score=73.82 Aligned_cols=248 Identities=19% Similarity=0.123 Sum_probs=153.0
Q ss_pred ccccCcceecccccchhhh---hhHHHHHhcCCccceeecCCCcccccccCCcccc----cccCccCchhhhhhccCcEe
Q 038150 176 LRVKRMRTLLINDHSLLNA---AILEELFRELTSLRALDFGGSYHSTRLLTPEVPR----NIEKLVLPETLCELYNLEKL 248 (488)
Q Consensus 176 ~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~----~i~~l~lp~~i~~L~~L~~L 248 (488)
..+..+..++++||. ++. ..+...+.+-.+|++.+++.-. .+..-+ .+. .+...+-++++|++.
T Consensus 27 ~~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~f------tgr~kde~~~~L~--~Ll~aLlkcp~l~~v 97 (388)
T COG5238 27 EMMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAF------TGRDKDELYSNLV--MLLKALLKCPRLQKV 97 (388)
T ss_pred HhhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhh------hcccHHHHHHHHH--HHHHHHhcCCcceee
Confidence 346788899999983 332 1344456677889999988764 443222 111 233445678999999
Q ss_pred ecCCCCCcccCchh----hccccccceeeccCCCCCCCCCC-CC-------------CCcccccccCceeecCCCCCCCC
Q 038150 249 DISDCFNLKELPEG----IGKLINVKHLLNRGTNSLRYMPV-GI-------------GRLTGLRTLGEFHVSAGGGVDGR 310 (488)
Q Consensus 249 ~l~~~~~~~~lp~~----l~~L~~L~~L~l~~~~~~~~lp~-~i-------------~~L~~L~~L~l~~~~~~~~~~~~ 310 (488)
+|+.|.+....|+. +++-+.|.||.+++|.. +.+.. .| ..-+.|++.....|++.++.
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs--- 173 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS--- 173 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc---
Confidence 99998876666654 45668899999999874 22221 12 23466777776666655421
Q ss_pred cccCcccccCCCcccccccccccCCCC-hhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCC
Q 038150 311 KACRLESLKNLEHLQVCGISRLGDVSD-VGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLK 389 (488)
Q Consensus 311 ~~~~~~~l~~L~~L~~L~~~~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 389 (488)
...+...+..-..|+.+.+...+.-+. ........+..+++|+.|++..|.++... +..+...++..+.|+
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g--------S~~La~al~~W~~lr 245 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG--------SRYLADALCEWNLLR 245 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh--------HHHHHHHhcccchhh
Confidence 111112222334566655544333222 12233345566788999999988776432 255556667777889
Q ss_pred EEEeccccCCCCCchH----HH--hccCCcEEeecCCCCCCC------CCC--CCCCCCcCeeeecccc
Q 038150 390 ELEIEYYRGNTVFPSW----MT--SLTNLKSLDLSSCENCEQ------LPP--LGKLQSLENLHIWRME 444 (488)
Q Consensus 390 ~L~l~~~~~~~~lp~~----~~--~l~~L~~L~l~~~~~~~~------~~~--l~~l~~L~~L~l~~~~ 444 (488)
.|.+..|-.+..-... +. ..|+|..|...+|..-.. ++. -+++|-|..|.+.+|.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 9999888665421111 11 468899888887765443 222 3568899999988776
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=1.1e-05 Score=72.29 Aligned_cols=206 Identities=15% Similarity=0.125 Sum_probs=103.7
Q ss_pred ccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCC
Q 038150 176 LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255 (488)
Q Consensus 176 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~ 255 (488)
..+.+++.|++.+|..-++..+...+.+++.|++|+++.|.+... ++ .+| -.+.+|++|-|.+..
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~---------~lp---~p~~nl~~lVLNgT~- 132 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IK---------SLP---LPLKNLRVLVLNGTG- 132 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--cc---------cCc---ccccceEEEEEcCCC-
Confidence 356788888888873333334555677888888888888874211 22 222 234567777777632
Q ss_pred cc--cCchhhccccccceeeccCCCCCCCC--CCCCCCcc-cccccCceeecCCCCCCCCcccCcccccCCCcccccccc
Q 038150 256 LK--ELPEGIGKLINVKHLLNRGTNSLRYM--PVGIGRLT-GLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS 330 (488)
Q Consensus 256 ~~--~lp~~l~~L~~L~~L~l~~~~~~~~l--p~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 330 (488)
+. .....+..++.++.|+++.|...... ...+...+ .+++|+...| +..++.+
T Consensus 133 L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c----------------------~~~~w~~ 190 (418)
T KOG2982|consen 133 LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC----------------------LEQLWLN 190 (418)
T ss_pred CChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCc----------------------HHHHHHH
Confidence 22 23334455666666666655311000 01111111 2233322222 1111111
Q ss_pred cccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCC--chHHHh
Q 038150 331 RLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF--PSWMTS 408 (488)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l--p~~~~~ 408 (488)
. ...-.-.+++..+-+..+.+.. ........+++.+--|.|+.+.+.. + ...+..
T Consensus 191 ~-----------~~l~r~Fpnv~sv~v~e~PlK~-----------~s~ek~se~~p~~~~LnL~~~~ids-wasvD~Ln~ 247 (418)
T KOG2982|consen 191 K-----------NKLSRIFPNVNSVFVCEGPLKT-----------ESSEKGSEPFPSLSCLNLGANNIDS-WASVDALNG 247 (418)
T ss_pred H-----------HhHHhhcccchheeeecCcccc-----------hhhcccCCCCCcchhhhhccccccc-HHHHHHHcC
Confidence 0 0111123445555555554321 2222445555666666666655443 2 223456
Q ss_pred ccCCcEEeecCCCCCCCCCC-------CCCCCCcCeeeec
Q 038150 409 LTNLKSLDLSSCENCEQLPP-------LGKLQSLENLHIW 441 (488)
Q Consensus 409 l~~L~~L~l~~~~~~~~~~~-------l~~l~~L~~L~l~ 441 (488)
++.|+.|.+++++.+..+.. +++|++++.|+=+
T Consensus 248 f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 248 FPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 78888888888876665431 5677787777654
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.88 E-value=1.4e-06 Score=86.86 Aligned_cols=109 Identities=24% Similarity=0.215 Sum_probs=71.6
Q ss_pred HHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccC
Q 038150 197 LEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRG 276 (488)
Q Consensus 197 ~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~ 276 (488)
+.+.+.-++.|+.|||++|.+ . --..+..|++|++|||++|. +..+|.--..-.+|+.|.+++
T Consensus 179 mD~SLqll~ale~LnLshNk~-----~-----------~v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKF-----T-----------KVDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhh-----h-----------hhHHHHhcccccccccccch-hccccccchhhhhheeeeecc
Confidence 455566778888888888885 2 22367778888888888864 666664221123488888888
Q ss_pred CCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccc
Q 038150 277 TNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS 330 (488)
Q Consensus 277 ~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 330 (488)
|.. ..+ .+|.+|.+|+.|+++.|-+.+ ...+.-+..|..|+.|++.
T Consensus 242 N~l-~tL-~gie~LksL~~LDlsyNll~~------hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 242 NAL-TTL-RGIENLKSLYGLDLSYNLLSE------HSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred cHH-Hhh-hhHHhhhhhhccchhHhhhhc------chhhhHHHHHHHHHHHhhc
Confidence 763 332 567888888888888876554 3334444555556666553
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=6.9e-05 Score=72.02 Aligned_cols=66 Identities=24% Similarity=0.360 Sum_probs=48.5
Q ss_pred HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL 280 (488)
Q Consensus 201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~ 280 (488)
+..+.+++.|++++|. +..+| .+| .+|+.|.+++|..+..+|..+. .+|++|.+++|..+
T Consensus 48 ~~~~~~l~~L~Is~c~------L~sLP------~LP------~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 48 IEEARASGRLYIKDCD------IESLP------VLP------NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEI 107 (426)
T ss_pred HHHhcCCCEEEeCCCC------CcccC------CCC------CCCcEEEccCCCCcccCCchhh--hhhhheEccCcccc
Confidence 5667889999999997 66443 122 3588999999888888886553 68899999988556
Q ss_pred CCCCCC
Q 038150 281 RYMPVG 286 (488)
Q Consensus 281 ~~lp~~ 286 (488)
..+|..
T Consensus 108 ~sLP~s 113 (426)
T PRK15386 108 SGLPES 113 (426)
T ss_pred cccccc
Confidence 666653
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=6e-06 Score=85.83 Aligned_cols=109 Identities=25% Similarity=0.272 Sum_probs=53.1
Q ss_pred cCcceecccccchhhhhhHHHHH-hcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc
Q 038150 179 KRMRTLLINDHSLLNAAILEELF-RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK 257 (488)
Q Consensus 179 ~~Lr~L~l~~~~~~~~~~~~~~~-~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~ 257 (488)
.+|++|++.|...+.. .++..+ ..||.||.|.+++-.+ ..+ .+-.-..++++|..||++++ .+.
T Consensus 122 ~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~~~~-----~~~--------dF~~lc~sFpNL~sLDIS~T-nI~ 186 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISGRQF-----DND--------DFSQLCASFPNLRSLDISGT-NIS 186 (699)
T ss_pred HhhhhcCccccchhhc-cHHHHHhhhCcccceEEecCcee-----cch--------hHHHHhhccCccceeecCCC-Ccc
Confidence 5566666666544443 333322 3356666666665443 110 11112235566666666663 355
Q ss_pred cCchhhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecC
Q 038150 258 ELPEGIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSA 303 (488)
Q Consensus 258 ~lp~~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~ 303 (488)
.+ .+++.|++|+.|.+.+-.+.. ..-..+.+|++|+.|+++....
T Consensus 187 nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 187 NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 55 556666666666655533221 0112345566666666655443
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=8.9e-05 Score=71.27 Aligned_cols=138 Identities=20% Similarity=0.235 Sum_probs=81.2
Q ss_pred hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150 239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL 318 (488)
Q Consensus 239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l 318 (488)
+..+.++++|++++| .+..+| . -..+|++|.+++|.....+|..+ .++|++|.+.+|..... .+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s----LP~----- 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG----LPE----- 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc----ccc-----
Confidence 456799999999998 588888 2 23579999999988777777655 36899999987632210 121
Q ss_pred cCCCcccccccc--cccCCCChhhhhHhhcccC-CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecc
Q 038150 319 KNLEHLQVCGIS--RLGDVSDVGEAKRLELDKK-KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEY 395 (488)
Q Consensus 319 ~~L~~L~~L~~~--~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 395 (488)
+|..|.+. .+..+ ..+ ++|+.|.+.+++.... ..++. .-+++|+.|.+++
T Consensus 113 ----sLe~L~L~~n~~~~L-----------~~LPssLk~L~I~~~n~~~~----------~~lp~--~LPsSLk~L~Is~ 165 (426)
T PRK15386 113 ----SVRSLEIKGSATDSI-----------KNVPNGLTSLSINSYNPENQ----------ARIDN--LISPSLKTLSLTG 165 (426)
T ss_pred ----ccceEEeCCCCCccc-----------ccCcchHhheeccccccccc----------ccccc--ccCCcccEEEecC
Confidence 23333332 11111 111 3456666643321000 11111 1246888888888
Q ss_pred ccCCCCCchHHHhccCCcEEeecCCC
Q 038150 396 YRGNTVFPSWMTSLTNLKSLDLSSCE 421 (488)
Q Consensus 396 ~~~~~~lp~~~~~l~~L~~L~l~~~~ 421 (488)
|.... +|..+. .+|+.|+++.+.
T Consensus 166 c~~i~-LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 166 CSNII-LPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCccc-Cccccc--ccCcEEEecccc
Confidence 77654 554322 588888887653
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=2.2e-06 Score=85.10 Aligned_cols=215 Identities=27% Similarity=0.266 Sum_probs=129.7
Q ss_pred cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150 177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL 256 (488)
Q Consensus 177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~ 256 (488)
.+..+..+.+..+ .+.. ....+..+..|.+|++..|. +. .+...+..+++|++|++++|. +
T Consensus 70 ~l~~l~~l~l~~n-~i~~--~~~~l~~~~~l~~l~l~~n~------i~---------~i~~~l~~~~~L~~L~ls~N~-I 130 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAK--ILNHLSKLKSLEALDLYDNK------IE---------KIENLLSSLVNLQVLDLSFNK-I 130 (414)
T ss_pred HhHhHHhhccchh-hhhh--hhcccccccceeeeeccccc------hh---------hcccchhhhhcchheeccccc-c
Confidence 4556666666664 4432 23336788889999998888 44 233337788899999999964 6
Q ss_pred ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc--ccCCCcccccccccccC
Q 038150 257 KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES--LKNLEHLQVCGISRLGD 334 (488)
Q Consensus 257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~~~~~~~ 334 (488)
+.+ .++..++.|+.|++.+|.+ ..+ .++..+++|+.+++.++.+.. +.. +..+.+++.+.+.....
T Consensus 131 ~~i-~~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~~l~l~~n~i~~---------ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 131 TKL-EGLSTLTLLKELNLSGNLI-SDI-SGLESLKSLKLLDLSYNRIVD---------IENDELSELISLEELDLGGNSI 198 (414)
T ss_pred ccc-cchhhccchhhheeccCcc-hhc-cCCccchhhhcccCCcchhhh---------hhhhhhhhccchHHHhccCCch
Confidence 666 4677788899999998873 333 456668888888888887654 222 34555555544432221
Q ss_pred CCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCC--CCEEEeccccCCCCCchHHHhccCC
Q 038150 335 VSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLN--LKELEIEYYRGNTVFPSWMTSLTNL 412 (488)
Q Consensus 335 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~lp~~~~~l~~L 412 (488)
.. ...+..+..+..+++..|.+... ..+..+.. |+.++++++.+.. .+..+..+.++
T Consensus 199 ~~------i~~~~~~~~l~~~~l~~n~i~~~--------------~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l 257 (414)
T KOG0531|consen 199 RE------IEGLDLLKKLVLLSLLDNKISKL--------------EGLNELVMLHLRELYLSGNRISR-SPEGLENLKNL 257 (414)
T ss_pred hc------ccchHHHHHHHHhhcccccceec--------------cCcccchhHHHHHHhcccCcccc-ccccccccccc
Confidence 11 12223334444445555554311 22222333 8888888888876 54556677888
Q ss_pred cEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150 413 KSLDLSSCENCEQLPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 413 ~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 444 (488)
..|++.++.... ...+...+.+..+....++
T Consensus 258 ~~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 258 PVLDLSSNRISN-LEGLERLPKLSELWLNDNK 288 (414)
T ss_pred cccchhhccccc-cccccccchHHHhccCcch
Confidence 888888776322 2224444555555555444
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=1.8e-06 Score=86.19 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=9.9
Q ss_pred HhcCCccceeecCCCcc
Q 038150 201 FRELTSLRALDFGGSYH 217 (488)
Q Consensus 201 ~~~l~~Lr~L~Ls~~~~ 217 (488)
+..+..||+|.|.+|.+
T Consensus 105 ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDL 121 (1096)
T ss_pred eccccceeeEEecCcch
Confidence 44555666666666653
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=7.3e-05 Score=47.67 Aligned_cols=19 Identities=47% Similarity=0.702 Sum_probs=8.8
Q ss_pred CchhhhhhccCcEeecCCC
Q 038150 235 LPETLCELYNLEKLDISDC 253 (488)
Q Consensus 235 lp~~i~~L~~L~~L~l~~~ 253 (488)
+|..+++|++|++|++++|
T Consensus 16 l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 16 LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp HGGHGTTCTTSSEEEETSS
T ss_pred cCchHhCCCCCCEEEecCC
Confidence 3333444444444444443
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=8.4e-05 Score=66.88 Aligned_cols=190 Identities=16% Similarity=0.047 Sum_probs=110.6
Q ss_pred hcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc---cCchhhccccccceeeccCCC
Q 038150 202 RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK---ELPEGIGKLINVKHLLNRGTN 278 (488)
Q Consensus 202 ~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~---~lp~~l~~L~~L~~L~l~~~~ 278 (488)
..+..++.|||.+|.+ .+.. ++-.-+.+|++|++|+++.|.... .+| .-+.+|+.|-+.++.
T Consensus 68 ~~~~~v~elDL~~N~i------SdWs------eI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLI------SDWS------EIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG 132 (418)
T ss_pred HHhhhhhhhhcccchh------ccHH------HHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC
Confidence 4578899999999984 2110 111223478999999999976322 233 345788888888766
Q ss_pred CCCC-CCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceee
Q 038150 279 SLRY-MPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTL 357 (488)
Q Consensus 279 ~~~~-lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 357 (488)
.... ....+..++.++.|+++.|.... +.+..-...+ . .+.+..|+.
T Consensus 133 L~w~~~~s~l~~lP~vtelHmS~N~~rq---------------------~n~Dd~c~e~-~----------s~~v~tlh~ 180 (418)
T KOG2982|consen 133 LSWTQSTSSLDDLPKVTELHMSDNSLRQ---------------------LNLDDNCIED-W----------STEVLTLHQ 180 (418)
T ss_pred CChhhhhhhhhcchhhhhhhhccchhhh---------------------hccccccccc-c----------chhhhhhhc
Confidence 4322 22346778888888887774321 1111000000 0 012333333
Q ss_pred cccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCch--HHHhccCCcEEeecCCCCCC--CCCCCCCCC
Q 038150 358 WFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS--WMTSLTNLKSLDLSSCENCE--QLPPLGKLQ 433 (488)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~--~~~~l~~l~ 433 (488)
..|..... .....-..-++|+..+.+..|.+.+ ... ....+|.+.-|.++.+.+-. .+..+.++|
T Consensus 181 ~~c~~~~w----------~~~~~l~r~Fpnv~sv~v~e~PlK~-~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~ 249 (418)
T KOG2982|consen 181 LPCLEQLW----------LNKNKLSRIFPNVNSVFVCEGPLKT-ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP 249 (418)
T ss_pred CCcHHHHH----------HHHHhHHhhcccchheeeecCcccc-hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc
Confidence 33322100 1111122336788989888887665 222 22356777778887776433 344588999
Q ss_pred CcCeeeecccccceee
Q 038150 434 SLENLHIWRMESVKRV 449 (488)
Q Consensus 434 ~L~~L~l~~~~~l~~~ 449 (488)
+|..|.+.+++....+
T Consensus 250 ~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 250 QLVDLRVSENPLSDPL 265 (418)
T ss_pred hhheeeccCCcccccc
Confidence 9999999999865555
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.41 E-value=0.00015 Score=64.53 Aligned_cols=256 Identities=17% Similarity=0.059 Sum_probs=154.5
Q ss_pred HHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc----cCc-------hhhccccc
Q 038150 200 LFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK----ELP-------EGIGKLIN 268 (488)
Q Consensus 200 ~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~----~lp-------~~l~~L~~ 268 (488)
.+..+..+..++||+|.+ ...-.. .+...|.+-.+|+..+++.- +.+ ++| +.+-++++
T Consensus 25 el~~~d~~~evdLSGNti-----gtEA~e-----~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~ 93 (388)
T COG5238 25 ELEMMDELVEVDLSGNTI-----GTEAME-----ELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPR 93 (388)
T ss_pred HHHhhcceeEEeccCCcc-----cHHHHH-----HHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCc
Confidence 356689999999999984 332211 23345666788998888762 222 233 35567899
Q ss_pred cceeeccCCCCCCCCCCC----CCCcccccccCceeecCCCCCCCCcccCcccc------cCCCcccccccccccCCCCh
Q 038150 269 VKHLLNRGTNSLRYMPVG----IGRLTGLRTLGEFHVSAGGGVDGRKACRLESL------KNLEHLQVCGISRLGDVSDV 338 (488)
Q Consensus 269 L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l------~~L~~L~~L~~~~~~~~~~~ 338 (488)
|+..++++|.+....|+. |++-+.|.+|.+.+|.......+++...+..+ .+-+.|+...+....-....
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence 999999999887766654 56778999999988876553333333333333 23455665444222212223
Q ss_pred hhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCch----HHHhccCCcE
Q 038150 339 GEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS----WMTSLTNLKS 414 (488)
Q Consensus 339 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~ 414 (488)
.......+....+|+.+.+..|.+... .....+...+..+.+|+.|+|..|.++-.-.. .+..-+.|+.
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpe-------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPE-------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcc-------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 344455666668899999999987532 11244455667788999999999877631111 1112356899
Q ss_pred EeecCCCCCCCCC-------CCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccc
Q 038150 415 LDLSSCENCEQLP-------PLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEV 483 (488)
Q Consensus 415 L~l~~~~~~~~~~-------~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 483 (488)
|.+.+|-....-. .--..|+|..|....+..-..+-.... . .....+++|-|..|.+.+
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~-l---------~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDIS-L---------NEFEQDAVPLLVDLERNG 312 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeec-h---------hhhhhcccHHHHHHHHcc
Confidence 9999997554311 112368888888776651111100000 0 011156788888877764
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.32 E-value=0.00027 Score=45.07 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=19.4
Q ss_pred CCCEEEeccccCCCCCchHHHhccCCcEEeecCCC
Q 038150 387 NLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCE 421 (488)
Q Consensus 387 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 421 (488)
+|+.|++++|.+.. +|..++.+++|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCC
Confidence 55666666666655 55555666666666666664
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.0006 Score=58.10 Aligned_cols=106 Identities=25% Similarity=0.276 Sum_probs=71.5
Q ss_pred CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCC--CCC
Q 038150 350 KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCE--QLP 427 (488)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~~ 427 (488)
.+...++++.|.+. -.+.+..++.|.+|.+.+|.+...-|.--..+|+|+.|.+.+|.+.. ++.
T Consensus 42 d~~d~iDLtdNdl~--------------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~ 107 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--------------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD 107 (233)
T ss_pred cccceecccccchh--------------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc
Confidence 34566777777642 23567778899999999998887345444467889999999887433 455
Q ss_pred CCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccc
Q 038150 428 PLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEV 483 (488)
Q Consensus 428 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 483 (488)
.+..+|.|++|.+-+++ ++.... +-.. ..-.+|+|+.|++.+
T Consensus 108 pLa~~p~L~~Ltll~Np-v~~k~~-YR~y------------vl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNP-VEHKKN-YRLY------------VLYKLPSLRTLDFQK 149 (233)
T ss_pred hhccCCccceeeecCCc-hhcccC-ceeE------------EEEecCcceEeehhh
Confidence 57788999999998887 222211 0000 044688888888765
No 60
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.15 E-value=0.00035 Score=65.86 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=32.5
Q ss_pred ccccccceeecccccCCCcccccchhhhHHHHHHHHHH
Q 038150 81 HKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANKIK 118 (488)
Q Consensus 81 ~~~~~lk~cf~~~cs~fped~~i~~~~l~~~~ia~~i~ 118 (488)
.++...|.||.| ||+||+++.|.++.++++|+|+|+.
T Consensus 246 ~L~~~~~~~f~~-L~~f~~~~~i~~~~li~lW~~e~~i 282 (287)
T PF00931_consen 246 SLPDELRRCFLY-LSIFPEGVPIPRERLIRLWVAEGFI 282 (287)
T ss_dssp SSHTCCHHHHHH-GGGSGTTS-EEHHHHHHHHTT-HHT
T ss_pred cCCccHHHHHhh-CcCCCCCceECHHHHHHHHHHCCCC
Confidence 357799999999 9999999999999999999999984
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.13 E-value=0.00013 Score=58.01 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=26.6
Q ss_pred cCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCc
Q 038150 244 NLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGE 298 (488)
Q Consensus 244 ~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 298 (488)
.+++|++..|. +..+|.++..++.|+.|+++.|. ....|..+..|.+|-.|+.
T Consensus 78 t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 78 TATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred hhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence 45555555532 55555555555555555555555 2334444444444444443
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.99 E-value=0.00012 Score=74.46 Aligned_cols=117 Identities=20% Similarity=0.215 Sum_probs=62.1
Q ss_pred cccCcceecccccchhhhhhHHHHHhcCCccceeecCCC-cccccccCCcccccccCccCchhhhhhccCcEeecCCCCC
Q 038150 177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGS-YHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255 (488)
Q Consensus 177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~-~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~ 255 (488)
.++.|+.|.+.++..+....+......+++|+.|+++++ .. ....+. ..+.....+.+|+.|++++|..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLL-----ITLSPL-----LLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccc-----cccchh-----HhhhhhhhcCCcCccchhhhhc
Confidence 357777777777655543234455677778888888763 21 111111 1122334557777777777654
Q ss_pred cccC-chhhc-cccccceeeccCCCCCC--CCCCCCCCcccccccCceeecC
Q 038150 256 LKEL-PEGIG-KLINVKHLLNRGTNSLR--YMPVGIGRLTGLRTLGEFHVSA 303 (488)
Q Consensus 256 ~~~l-p~~l~-~L~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~ 303 (488)
+... -..+. .+++|++|.+..|.... .+-....++++|++|++..+..
T Consensus 256 isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 256 VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 3321 11222 25677777766665211 1111134566677777766544
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.66 E-value=0.00045 Score=70.31 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=16.9
Q ss_pred HHhccCCcEEeecCCCCCCCCC--C-CCCCCCc
Q 038150 406 MTSLTNLKSLDLSSCENCEQLP--P-LGKLQSL 435 (488)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~~--~-l~~l~~L 435 (488)
+..+++|+.+.+..|. ..... . +..+|.|
T Consensus 358 ~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL 389 (482)
T ss_pred HhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence 4467777777777776 33322 2 4555555
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.61 E-value=0.0017 Score=51.89 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=50.3
Q ss_pred cceeeEEEEecCCcCccccc-cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150 157 KVRHLMLIFSKAASLPISTL-RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL 235 (488)
Q Consensus 157 ~vr~l~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l 235 (488)
.+..++++.+...+||..+. +++.+.+|++.+| .+.. +|..+..++.||.|+++.|.+ . ..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisd--vPeE~Aam~aLr~lNl~~N~l------~---------~~ 115 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISD--VPEELAAMPALRSLNLRFNPL------N---------AE 115 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhh--chHHHhhhHHhhhcccccCcc------c---------cc
Confidence 33445666666666665543 3346666666665 4442 444466666666666666663 2 55
Q ss_pred chhhhhhccCcEeecCCCCCcccCchh
Q 038150 236 PETLCELYNLEKLDISDCFNLKELPEG 262 (488)
Q Consensus 236 p~~i~~L~~L~~L~l~~~~~~~~lp~~ 262 (488)
|..|..|.+|-+|+..+|. ..++|..
T Consensus 116 p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 116 PRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred hHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 5666666666666666643 4445443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.00085 Score=59.62 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=8.2
Q ss_pred hhcccCCCCCceeeccc
Q 038150 344 LELDKKKYLSSLTLWFD 360 (488)
Q Consensus 344 ~~l~~l~~L~~L~l~~~ 360 (488)
..+..+++|+.|.++.|
T Consensus 59 ~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDN 75 (260)
T ss_pred ccCCCcchhhhhcccCC
Confidence 33444445555555554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.0002 Score=63.84 Aligned_cols=58 Identities=24% Similarity=0.157 Sum_probs=26.5
Q ss_pred CCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC---CCCCCCcCeeeecccc
Q 038150 384 PPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP---LGKLQSLENLHIWRME 444 (488)
Q Consensus 384 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~---l~~l~~L~~L~l~~~~ 444 (488)
.|+.|+.|.|+-|.+++ + ..+..+.+|+.|+|..|.+ .++.. +.++|+|++|-|..|+
T Consensus 39 kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhHhhccCC
Confidence 34455555555555543 2 2234455555555544432 22221 4445555555555444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.001 Score=59.48 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=47.2
Q ss_pred ccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc
Q 038150 178 VKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK 257 (488)
Q Consensus 178 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~ 257 (488)
+.+++.|++-|| .+++ + ..+.+++.|.||.||-|. +. -.+.+..+++|+.|+|+.|. +.
T Consensus 18 l~~vkKLNcwg~-~L~D--I-sic~kMp~lEVLsLSvNk------Is----------sL~pl~rCtrLkElYLRkN~-I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDD--I-SICEKMPLLEVLSLSVNK------IS----------SLAPLQRCTRLKELYLRKNC-IE 76 (388)
T ss_pred HHHhhhhcccCC-CccH--H-HHHHhcccceeEEeeccc------cc----------cchhHHHHHHHHHHHHHhcc-cc
Confidence 344455555554 3332 1 124455666666666555 22 12345555566666665543 33
Q ss_pred cCc--hhhccccccceeeccCCCCCCCCCC-----CCCCcccccccC
Q 038150 258 ELP--EGIGKLINVKHLLNRGTNSLRYMPV-----GIGRLTGLRTLG 297 (488)
Q Consensus 258 ~lp--~~l~~L~~L~~L~l~~~~~~~~lp~-----~i~~L~~L~~L~ 297 (488)
.+. ..+.++++|+.|-+..|...+.-+. .+.-|++|+.|+
T Consensus 77 sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 77 SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 322 2345556666666655543333222 134456666655
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.79 E-value=0.0027 Score=56.49 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=6.0
Q ss_pred cCCccceeecCCC
Q 038150 203 ELTSLRALDFGGS 215 (488)
Q Consensus 203 ~l~~Lr~L~Ls~~ 215 (488)
.+++|+.|.+|.|
T Consensus 63 ~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 63 KLPKLKKLELSDN 75 (260)
T ss_pred CcchhhhhcccCC
Confidence 3444444444444
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.0022 Score=54.73 Aligned_cols=66 Identities=27% Similarity=0.357 Sum_probs=29.4
Q ss_pred hhhCCCCCCCCEEEeccccCCCCC-chHHH-hccCCcEEeecCCCCCCCCC--CCCCCCCcCeeeecccc
Q 038150 379 LEALRPPLNLKELEIEYYRGNTVF-PSWMT-SLTNLKSLDLSSCENCEQLP--PLGKLQSLENLHIWRME 444 (488)
Q Consensus 379 ~~~~~~~~~L~~L~l~~~~~~~~l-p~~~~-~l~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~ 444 (488)
.+.+..++.++.|.+.+|.-..+. -..++ -.++|+.|+|++|+..++-. .+..+++|+.|.|.+.+
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 344444555555555554332100 00011 23455555555555444422 24555555555555544
No 70
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.04 E-value=0.02 Score=49.11 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=59.1
Q ss_pred CccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhcc-ccccceeeccCCCCCCCC
Q 038150 205 TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGK-LINVKHLLNRGTNSLRYM 283 (488)
Q Consensus 205 ~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~-L~~L~~L~l~~~~~~~~l 283 (488)
.+.-.+||+.|. +..+ ..+..+..|.+|.+..|. +..+-+.+.. +++|..|.+.+|.+ ..+
T Consensus 42 d~~d~iDLtdNd------l~~l----------~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi-~~l 103 (233)
T KOG1644|consen 42 DQFDAIDLTDND------LRKL----------DNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSI-QEL 103 (233)
T ss_pred cccceecccccc------hhhc----------ccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcch-hhh
Confidence 345667777777 3322 123366777777777755 5555445543 45677777777763 222
Q ss_pred C--CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccc
Q 038150 284 P--VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR 331 (488)
Q Consensus 284 p--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~ 331 (488)
. ..+..++.|++|.+-+|..+.. .......+-.+++|+.|++..
T Consensus 104 ~dl~pLa~~p~L~~Ltll~Npv~~k----~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 104 GDLDPLASCPKLEYLTLLGNPVEHK----KNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhcchhccCCccceeeecCCchhcc----cCceeEEEEecCcceEeehhh
Confidence 1 2355667777777766655441 112233445566666665543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.34 E-value=0.023 Score=29.96 Aligned_cols=10 Identities=40% Similarity=0.647 Sum_probs=5.6
Q ss_pred cceeecCCCc
Q 038150 207 LRALDFGGSY 216 (488)
Q Consensus 207 Lr~L~Ls~~~ 216 (488)
|++||+++|.
T Consensus 2 L~~Ldls~n~ 11 (22)
T PF00560_consen 2 LEYLDLSGNN 11 (22)
T ss_dssp ESEEEETSSE
T ss_pred ccEEECCCCc
Confidence 5555555555
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.29 E-value=0.017 Score=30.43 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=12.0
Q ss_pred cCcEeecCCCCCcccCchhhcc
Q 038150 244 NLEKLDISDCFNLKELPEGIGK 265 (488)
Q Consensus 244 ~L~~L~l~~~~~~~~lp~~l~~ 265 (488)
+|++|++++|. +..+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 35666666663 4466655443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=0.012 Score=50.35 Aligned_cols=75 Identities=20% Similarity=0.097 Sum_probs=50.7
Q ss_pred hhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCC-CCCCCEEEeccccC-CCCCchHHHhccCCcEEe
Q 038150 339 GEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRP-PLNLKELEIEYYRG-NTVFPSWMTSLTNLKSLD 416 (488)
Q Consensus 339 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~-~~~lp~~~~~l~~L~~L~ 416 (488)
...-...+.+++.++.|.+.++.-- .....+.+++ .++|+.|+|++|.- ++.--.++..+++|+.|.
T Consensus 114 ~~eGle~L~~l~~i~~l~l~~ck~~-----------dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 114 MYEGLEHLRDLRSIKSLSLANCKYF-----------DDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred HHHHHHHHhccchhhhheeccccch-----------hhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3344566777777888888777532 2333444444 56999999998854 433467888999999999
Q ss_pred ecCCCCCC
Q 038150 417 LSSCENCE 424 (488)
Q Consensus 417 l~~~~~~~ 424 (488)
|.+-+...
T Consensus 183 l~~l~~v~ 190 (221)
T KOG3864|consen 183 LYDLPYVA 190 (221)
T ss_pred hcCchhhh
Confidence 88755433
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.50 E-value=0.0065 Score=60.83 Aligned_cols=197 Identities=19% Similarity=0.112 Sum_probs=97.2
Q ss_pred cceecccccchhhh---hhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhh-ccCcEeecCCCCCc
Q 038150 181 MRTLLINDHSLLNA---AILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCEL-YNLEKLDISDCFNL 256 (488)
Q Consensus 181 Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L-~~L~~L~l~~~~~~ 256 (488)
+..|.+.+|. +.. ..+...+.....|..|++++|.+ +. .... .+-..+... ..|++|++..|...
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n~l------~~--~g~~--~l~~~l~~~~~~l~~L~l~~c~l~ 157 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGNNL------GD--EGAR--LLCEGLRLPQCLLQTLELVSCSLT 157 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccCCC------cc--HhHH--HHHhhcccchHHHHHHHhhccccc
Confidence 6777777763 222 13455567778899999999884 31 1000 011111121 45667777776533
Q ss_pred c----cCchhhccccccceeeccCCCCCC----CCCCCCC----CcccccccCceeecCCCCCCCCcccCcccccCCCc-
Q 038150 257 K----ELPEGIGKLINVKHLLNRGTNSLR----YMPVGIG----RLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEH- 323 (488)
Q Consensus 257 ~----~lp~~l~~L~~L~~L~l~~~~~~~----~lp~~i~----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~- 323 (488)
. .+...+.+...++.++++.|.+.. .++..+. ...++++|.+.++...... ....-..+...++
T Consensus 158 ~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~---c~~l~~~l~~~~~~ 234 (478)
T KOG4308|consen 158 SEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS---CALLDEVLASGESL 234 (478)
T ss_pred ccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH---HHHHHHHHhccchh
Confidence 2 245566667778888888776421 1122222 4567777777666544311 0111122233333
Q ss_pred ccccccccccCCCChhhhhHhhcccC-CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCC
Q 038150 324 LQVCGISRLGDVSDVGEAKRLELDKK-KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN 399 (488)
Q Consensus 324 L~~L~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 399 (488)
++.+++.....-+...+.+...+..+ ..++.++++.|.+... ....+.+.+..++.++.|.+.++...
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~--------~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEK--------GVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcccc--------chHHHHHHHhhhHHHHHhhcccCccc
Confidence 33333322221111222333334444 4556666666655432 12444455555556666666655544
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.55 E-value=0.17 Score=24.64 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=4.6
Q ss_pred ccceeecCCCc
Q 038150 206 SLRALDFGGSY 216 (488)
Q Consensus 206 ~Lr~L~Ls~~~ 216 (488)
+|++|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34555555554
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.09 E-value=0.028 Score=49.28 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=45.3
Q ss_pred HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL 280 (488)
Q Consensus 201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~ 280 (488)
+..+....+||++.+.+ - .+-..++.++.|..|+++.|. +..+|.+.+.+..++++.+..|. .
T Consensus 38 i~~~kr~tvld~~s~r~------v---------n~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~ 100 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL------V---------NLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-H 100 (326)
T ss_pred hhccceeeeehhhhhHH------H---------hhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-h
Confidence 44555556666665552 1 233344555555566665532 55556666666666666555554 4
Q ss_pred CCCCCCCCCcccccccCceee
Q 038150 281 RYMPVGIGRLTGLRTLGEFHV 301 (488)
Q Consensus 281 ~~lp~~i~~L~~L~~L~l~~~ 301 (488)
...|...++++.+++++.-.+
T Consensus 101 ~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 101 SQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred hhCCccccccCCcchhhhccC
Confidence 455555555666655555443
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.27 E-value=0.95 Score=36.34 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=39.7
Q ss_pred hCCCCCCCCEEEeccccCCCCCc-hHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCccccCCC
Q 038150 381 ALRPPLNLKELEIEYYRGNTVFP-SWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDEFLGIE 457 (488)
Q Consensus 381 ~~~~~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 457 (488)
.+..+++|+.+.+.+. ... ++ ..+..+++|+.+.+.+ ....++. +..+++|+.+.+.. .+..++...+...
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~ 103 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC 103 (129)
T ss_dssp TTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT-
T ss_pred hccccccccccccccc-ccc-cceeeeecccccccccccc--cccccccccccccccccccccCc--cccEEchhhhcCC
Confidence 4566667888887664 333 33 2344566778887754 2333332 55677888777743 2556655433221
Q ss_pred CCCCCCCCCCcccccCcccccccccccccCC
Q 038150 458 SDHHGSSSSSSVIIAFPKLKSLSIEVLRELE 488 (488)
Q Consensus 458 ~~~~~~~~~~~~~~~~p~L~~L~l~~~p~L~ 488 (488)
......-...+..+....+.+|++||
T Consensus 104 -----~l~~i~~~~~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 104 -----NLKEINIPSNITKIEENAFKNCTKLK 129 (129)
T ss_dssp -----T--EEE-TTB-SS----GGG------
T ss_pred -----CceEEEECCCccEECCccccccccCC
Confidence 00111112345566677778888876
No 78
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=85.68 E-value=1.1 Score=41.25 Aligned_cols=54 Identities=20% Similarity=0.378 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-hhh-ccCcHHHHHHHHHHHHhhhchHHHHHHHH
Q 038150 6 GVEKEVKSLTSHLQAIQAVLDDA-EEK-QVKDKAVRHWLGRLKYASYDIEDVLDEWI 60 (488)
Q Consensus 6 ~v~~~i~~l~~eL~~~~~~L~~a-~~~-~~~~~~v~~w~~~lr~~~yd~eD~id~~~ 60 (488)
-++.+++-++.|++.+|.||+.. ++. ...++ .+.++.++-..||.+|-++|...
T Consensus 318 flKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 318 FLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeeeeehhh
Confidence 46889999999999999999986 442 34444 89999999999999999999875
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.50 E-value=1.3 Score=24.19 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=5.4
Q ss_pred ccceeecCCCc
Q 038150 206 SLRALDFGGSY 216 (488)
Q Consensus 206 ~Lr~L~Ls~~~ 216 (488)
+|++|+|++|.
T Consensus 3 ~L~~L~L~~N~ 13 (26)
T smart00369 3 NLRELDLSNNQ 13 (26)
T ss_pred CCCEEECCCCc
Confidence 44455555544
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.50 E-value=1.3 Score=24.19 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=5.4
Q ss_pred ccceeecCCCc
Q 038150 206 SLRALDFGGSY 216 (488)
Q Consensus 206 ~Lr~L~Ls~~~ 216 (488)
+|++|+|++|.
T Consensus 3 ~L~~L~L~~N~ 13 (26)
T smart00370 3 NLRELDLSNNQ 13 (26)
T ss_pred CCCEEECCCCc
Confidence 44455555544
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=79.72 E-value=0.11 Score=52.30 Aligned_cols=219 Identities=20% Similarity=0.094 Sum_probs=134.2
Q ss_pred ceeeEEEEecCCcC-----ccccccccCcceecccccchhhhhhHH---HHHhcC-CccceeecCCCcccccccCCcccc
Q 038150 158 VRHLMLIFSKAASL-----PISTLRVKRMRTLLINDHSLLNAAILE---ELFREL-TSLRALDFGGSYHSTRLLTPEVPR 228 (488)
Q Consensus 158 vr~l~l~~~~~~~~-----~~~~~~~~~Lr~L~l~~~~~~~~~~~~---~~~~~l-~~Lr~L~Ls~~~~~~~~~~~~lp~ 228 (488)
+.++.+..+..... -..+.....|..|++.+|. +++.... ..+... ..+++|++..|.. ...-..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l-----~~~g~~ 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSCSL-----TSEGAA 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcccc-----cccchH
Confidence 55666666655332 2345567889999999984 3331222 223333 4578888888874 221111
Q ss_pred cccCccCchhhhhhccCcEeecCCCCCcc----cCchhhc----cccccceeeccCCCCCCC----CCCCCCCccc-ccc
Q 038150 229 NIEKLVLPETLCELYNLEKLDISDCFNLK----ELPEGIG----KLINVKHLLNRGTNSLRY----MPVGIGRLTG-LRT 295 (488)
Q Consensus 229 ~i~~l~lp~~i~~L~~L~~L~l~~~~~~~----~lp~~l~----~L~~L~~L~l~~~~~~~~----lp~~i~~L~~-L~~ 295 (488)
.+.+.+....+++.++++.|.... .++..+. ...++++|++.+|..... +-..+...++ +..
T Consensus 163 -----~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e 237 (478)
T KOG4308|consen 163 -----PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE 237 (478)
T ss_pred -----HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH
Confidence 455667778899999999986542 1334444 478899999999874311 1112455555 777
Q ss_pred cCceeecCCCCCCCCcccCcccccCC-CcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccc
Q 038150 296 LGEFHVSAGGGVDGRKACRLESLKNL-EHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNED 374 (488)
Q Consensus 296 L~l~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 374 (488)
|++..|...+.. .......+..+ ..++.+++............+...+..+.+++.+.++.|.+.....
T Consensus 238 l~l~~n~l~d~g---~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~------- 307 (478)
T KOG4308|consen 238 LDLASNKLGDVG---VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV------- 307 (478)
T ss_pred HHHHhcCcchHH---HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH-------
Confidence 888888766421 11122333444 5567777665555555556677888888999999999998764422
Q ss_pred hHHHhhhCCCCCCCCEEEeccccC
Q 038150 375 NQLLLEALRPPLNLKELEIEYYRG 398 (488)
Q Consensus 375 ~~~~~~~~~~~~~L~~L~l~~~~~ 398 (488)
....+.+.....+..+.+.++..
T Consensus 308 -~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 308 -ELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred -HHHHHHhhhcccchhhhccccCc
Confidence 44455555556677777775443
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.98 E-value=0.27 Score=43.30 Aligned_cols=84 Identities=20% Similarity=0.139 Sum_probs=48.4
Q ss_pred ccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCC
Q 038150 176 LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255 (488)
Q Consensus 176 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~ 255 (488)
..++....|+++.| .+- .+...|+.+..|.-||++.+. +. .+|+..+.+..+.++++..|.
T Consensus 39 ~~~kr~tvld~~s~-r~v--n~~~n~s~~t~~~rl~~sknq------~~---------~~~~d~~q~~e~~~~~~~~n~- 99 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSN-RLV--NLGKNFSILTRLVRLDLSKNQ------IK---------FLPKDAKQQRETVNAASHKNN- 99 (326)
T ss_pred hccceeeeehhhhh-HHH--hhccchHHHHHHHHHhccHhh------Hh---------hChhhHHHHHHHHHHHhhccc-
Confidence 34566666666665 222 233345555666666666666 44 455556666666666665533
Q ss_pred cccCchhhccccccceeeccCCC
Q 038150 256 LKELPEGIGKLINVKHLLNRGTN 278 (488)
Q Consensus 256 ~~~lp~~l~~L~~L~~L~l~~~~ 278 (488)
.+..|.+.++++++++++..++.
T Consensus 100 ~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 100 HSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hhhCCccccccCCcchhhhccCc
Confidence 55666666666666666665554
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.06 E-value=1.7 Score=23.74 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=13.2
Q ss_pred CcccccccccccccC
Q 038150 473 FPKLKSLSIEVLREL 487 (488)
Q Consensus 473 ~p~L~~L~l~~~p~L 487 (488)
+|+|+.|+|.+|+++
T Consensus 1 c~~L~~L~l~~C~~i 15 (26)
T smart00367 1 CPNLRELDLSGCTNI 15 (26)
T ss_pred CCCCCEeCCCCCCCc
Confidence 479999999999975
No 84
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=63.26 E-value=16 Score=26.89 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=37.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhhchH
Q 038150 4 VVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIE 53 (488)
Q Consensus 4 ~~~v~~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~yd~e 53 (488)
.+.+...+-.|+..|..+++++...+. .+.++..|..+++++--.++
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpg---i~~s~eeq~~~i~~Le~~i~ 69 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPG---IDRSVEEQEEEIEELEEQIR 69 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC---ccCCHHHHHHHHHHHHHHHH
Confidence 456788899999999999999998866 46678888888877654443
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=60.30 E-value=2 Score=22.87 Aligned_cols=10 Identities=60% Similarity=0.853 Sum_probs=3.2
Q ss_pred cCcEeecCCC
Q 038150 244 NLEKLDISDC 253 (488)
Q Consensus 244 ~L~~L~l~~~ 253 (488)
+|++|+|++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 3444444443
No 86
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=57.11 E-value=25 Score=27.89 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=37.4
Q ss_pred hCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCcccc
Q 038150 381 ALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDEFL 454 (488)
Q Consensus 381 ~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~ 454 (488)
.+..+++|+.+.+.. .....-...+..+++|+.+.+.+. ...++. +..+++|+.+.+.+ .+..++...+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccc
Confidence 355667888888874 233312334567779999999874 455544 77788899999965 4666665443
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=55.51 E-value=7.8 Score=21.29 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=6.8
Q ss_pred CCCEEEeccccCCC
Q 038150 387 NLKELEIEYYRGNT 400 (488)
Q Consensus 387 ~L~~L~l~~~~~~~ 400 (488)
+|+.|.+++|.+.+
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 44455555554444
No 88
>TIGR02501 type_III_yscE type III secretion system protein, YseE family. Members of this family are found exclusively in type III secretion appparatus gene clusters in bacteria. Those bacteria with a protein from this family tend to target animal cells, as does Yersinia pestis. This protein is small (about 70 amino acids) and not well characterized.
Probab=54.33 E-value=73 Score=22.30 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=41.6
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhhchHHHHHHHHH
Q 038150 4 VVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWIT 61 (488)
Q Consensus 4 ~~~v~~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~yd~eD~id~~~~ 61 (488)
+++..+.++.++..|...++.++..=.....-.+.+.|.. +.++..-+++||+-+.+
T Consensus 8 L~~~~~~~~~~~~~L~~a~~~lk~qL~~~~tp~qYq~l~~-~~~A~~aA~~II~~l~~ 64 (67)
T TIGR02501 8 LSHADTAARAIIEQLEAALAELKEQLSRGGDPQQYQEWQL-LADAIEAAIKIIEILTG 64 (67)
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4555666788888888888777776666665566677765 66778889999988765
No 89
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=52.16 E-value=73 Score=30.52 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=46.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhhchHHHHHHHHHh
Q 038150 5 VGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWITG 62 (488)
Q Consensus 5 ~~v~~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~yd~eD~id~~~~~ 62 (488)
-.++.-|.+|++|++.|.+..+.+-++......++.=++++++-.-.-.+-++|..-+
T Consensus 260 dTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeeh 317 (336)
T PF05055_consen 260 DTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEH 317 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3467789999999999999999998887767778888888888766666666666643
No 90
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=50.78 E-value=52 Score=23.88 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=24.4
Q ss_pred cchhcHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 038150 2 KLVVGVEKEVKSLTSHLQAIQAVLDDAEEKQ 32 (488)
Q Consensus 2 ~l~~~v~~~i~~l~~eL~~~~~~L~~a~~~~ 32 (488)
.+++++++++..++.++..+++.++..+...
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~ 47 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYKQMDPSL 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3678888999988888888888888766543
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.96 E-value=7.7 Score=39.00 Aligned_cols=84 Identities=17% Similarity=0.088 Sum_probs=52.4
Q ss_pred ccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHH--hccCCcEEeecCCCCCC
Q 038150 347 DKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMT--SLTNLKSLDLSSCENCE 424 (488)
Q Consensus 347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~--~l~~L~~L~l~~~~~~~ 424 (488)
.+.+.+.++.++.|++... +.+..-....|+|..|+|++|......-.++. ....|++|.+.+|+..+
T Consensus 215 ~n~p~i~sl~lsnNrL~~L----------d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHL----------DALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhch----------hhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3456777788888876533 33333334567899999998833321233343 34568888889998777
Q ss_pred CCCC----C----CCCCCcCeeee
Q 038150 425 QLPP----L----GKLQSLENLHI 440 (488)
Q Consensus 425 ~~~~----l----~~l~~L~~L~l 440 (488)
.... + ..+|+|..|+=
T Consensus 285 tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 285 TFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred chhhhHHHHHHHHHhcchheeecC
Confidence 6431 2 25788877654
No 92
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=49.37 E-value=47 Score=29.00 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHhhhchHHHHHHHHHhhhhhhhccCcCccccccccccc
Q 038150 6 GVEKEVKSLTSHLQAIQAVLDDAEEK-QVKDKAVRHWLGRLKYASYDIEDVLDEWITGRRKLQIEGGIGENALIAPHKKK 84 (488)
Q Consensus 6 ~v~~~i~~l~~eL~~~~~~L~~a~~~-~~~~~~v~~w~~~lr~~~yd~eD~id~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (488)
.+..+++.++.++..-..-|...+.. ......++.+..++++....++++-|++..--+....- -.
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~-------------e~ 165 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML-------------EE 165 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
Confidence 34455666666666666666665544 23355678889999999999999999988544333221 11
Q ss_pred ccceeecccccCCCcccccchhhhHHHHHHHHHHH
Q 038150 85 KVRFCFRASCLGFKTEEFGFKQVFLRHDIANKIKE 119 (488)
Q Consensus 85 ~lk~cf~~~cs~fped~~i~~~~l~~~~ia~~i~~ 119 (488)
.++.. .-....|+.+||+.+-.+
T Consensus 166 k~~~l------------~~En~~Lv~Rwm~~k~~e 188 (194)
T PF08614_consen 166 KLRKL------------EEENRELVERWMQRKAQE 188 (194)
T ss_dssp HHHHH------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 11111 225678999999877654
No 93
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=48.17 E-value=75 Score=21.69 Aligned_cols=50 Identities=20% Similarity=0.445 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhh-hccCcHHHHHHHHHHHHhhhchHHHHHHHHH
Q 038150 12 KSLTSHLQAIQAVLDDAEE-KQVKDKAVRHWLGRLKYASYDIEDVLDEWIT 61 (488)
Q Consensus 12 ~~l~~eL~~~~~~L~~a~~-~~~~~~~v~~w~~~lr~~~yd~eD~id~~~~ 61 (488)
.+|++=|..|..+++-... ....++..+.++..++..+..+.++++++..
T Consensus 11 Helr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 61 (68)
T PF00512_consen 11 HELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLD 61 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888888888887 4444555689999999999999999988764
No 94
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=42.18 E-value=30 Score=29.45 Aligned_cols=48 Identities=13% Similarity=0.279 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHhhh-ccCcHHHHHHHHHHHHhhhchHHH
Q 038150 8 EKEVKSLTSHLQ------AIQAVLDDAEEK-QVKDKAVRHWLGRLKYASYDIEDV 55 (488)
Q Consensus 8 ~~~i~~l~~eL~------~~~~~L~~a~~~-~~~~~~v~~w~~~lr~~~yd~eD~ 55 (488)
+++|+.+++.++ +|+++++.+-.- +....++..|+.+.|+.|-|+++.
T Consensus 96 ~~Qie~vkd~mTyg~v~~T~k~y~~mvP~Lteeek~~I~~~L~eARE~A~D~~~~ 150 (188)
T PF12875_consen 96 EEQIEQVKDGMTYGVVPFTYKGYLDMVPSLTEEEKAQILTWLKEAREFAMDAKSS 150 (188)
T ss_dssp HHHHHHHHHHCTTTHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHHTTSSSH
T ss_pred HHHHHHHHccccceehhhhHHHHHHHcCcccHHHHHHHHHHHHHHHHHhccccch
Confidence 467888888765 567777765443 344567899999999999999875
No 95
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=41.53 E-value=19 Score=19.98 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=7.5
Q ss_pred CccceeecCCCc
Q 038150 205 TSLRALDFGGSY 216 (488)
Q Consensus 205 ~~Lr~L~Ls~~~ 216 (488)
++|++|+|++|.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 356666666666
No 96
>PHA02067 hypothetical protein
Probab=39.95 E-value=1.2e+02 Score=26.42 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhhchHHHHHHHHHhhhhhhhccC
Q 038150 9 KEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWITGRRKLQIEGG 71 (488)
Q Consensus 9 ~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~yd~eD~id~~~~~~~~~~~~~~ 71 (488)
.++..|-.+|......+.++.. . ....+.|++. |+..++..|+-+.|..++.++...+.
T Consensus 39 peLS~LD~~LA~aY~aar~~pa--L-kaeQR~WLK~-RNaC~k~~CL~~aYq~RIaELq~~~~ 97 (221)
T PHA02067 39 PELSMMDQQLADAYKVVRHIPE--V-KADQKTFIKD-RNSAPSLGDLKDLMRDRIIELEIIAE 97 (221)
T ss_pred HHHHHHHHHHHHHHHHHhcchH--H-HHHHHHHHHH-hhccCChHHHHHHHHHHHHHHHHhhh
Confidence 3566777777776655543321 2 3335789987 99999999999999999888875543
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=37.40 E-value=28 Score=19.14 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=6.2
Q ss_pred CccceeecCCCc
Q 038150 205 TSLRALDFGGSY 216 (488)
Q Consensus 205 ~~Lr~L~Ls~~~ 216 (488)
.+|++|+|++|.
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 345555555554
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.50 E-value=12 Score=37.81 Aligned_cols=86 Identities=24% Similarity=0.224 Sum_probs=54.1
Q ss_pred CCCCCCCEEEeccccCCC--CCchHHHhccCCcEEeecCCCCC-CCCCCCC--CCCCcCeeeecccccceeeCc--cccC
Q 038150 383 RPPLNLKELEIEYYRGNT--VFPSWMTSLTNLKSLDLSSCENC-EQLPPLG--KLQSLENLHIWRMESVKRVGD--EFLG 455 (488)
Q Consensus 383 ~~~~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~-~~~~~l~--~l~~L~~L~l~~~~~l~~~~~--~~~~ 455 (488)
.+.+.+..+.|++|++.. .+.......|+|..|+|++|... ...++++ +...|++|-+.+|+.-+.... +.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 456789999999987764 02222235789999999998322 2223333 246689999999984444321 1111
Q ss_pred CCCCCCCCCCCCcccccCccccccc
Q 038150 456 IESDHHGSSSSSSVIIAFPKLKSLS 480 (488)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~p~L~~L~ 480 (488)
. ....||+|..|+
T Consensus 295 ~------------i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 A------------IRELFPKLLRLD 307 (585)
T ss_pred H------------HHHhcchheeec
Confidence 1 145799988875
No 99
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.52 E-value=1.2e+02 Score=25.48 Aligned_cols=44 Identities=27% Similarity=0.370 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhhchHH
Q 038150 9 KEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIED 54 (488)
Q Consensus 9 ~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~yd~eD 54 (488)
+.+....++|..+|..|-+... ...+-.+.|++.+..+....++
T Consensus 49 ~~L~~ae~~Ln~vQ~~L~~l~d--~~~d~~~~~l~km~kA~rgE~~ 92 (169)
T PF09869_consen 49 KELKDAEKELNSVQSILFDLCD--EGEDYRKKWLDKMKKASRGELV 92 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHhccchh
Confidence 4566677778888887777665 4466678888888887766655
No 100
>PRK10869 recombination and repair protein; Provisional
Probab=33.97 E-value=1.9e+02 Score=30.16 Aligned_cols=40 Identities=20% Similarity=0.013 Sum_probs=28.2
Q ss_pred HHHHHhhhccCcHHHHHHHHHHHHhhhchHHHHHHHHHhh
Q 038150 24 VLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWITGR 63 (488)
Q Consensus 24 ~L~~a~~~~~~~~~v~~w~~~lr~~~yd~eD~id~~~~~~ 63 (488)
+++.++.-...|+.+......+.++.|.++|+.+++..+.
T Consensus 249 ~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 288 (553)
T PRK10869 249 AKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYL 288 (553)
T ss_pred HHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344467778888889999999999988887544
No 101
>PF12178 INCENP_N: Chromosome passenger complex (CPC) protein INCENP N terminal; InterPro: IPR022006 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. INCENP is a regulatory protein in the chromosome passenger complex. It is involved in regulation of the catalytic protein Aurora B. It performs this function in association with two other proteins - Survivin and Borealin. These proteins form a tight three-helical bundle. The N-terminal domain is the domain involved in formation of this three helical bundle. ; PDB: 2QFA_C.
Probab=32.71 E-value=85 Score=19.10 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHhh
Q 038150 20 AIQAVLDDAEEKQVKDKAVRHWLGRLKYAS 49 (488)
Q Consensus 20 ~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~ 49 (488)
.++.|+.+++.+.. .|++++.+-|
T Consensus 14 Kl~efl~~vd~~d~------vWLeEI~eeA 37 (38)
T PF12178_consen 14 KLQEFLCNVDNKDM------VWLEEIQEEA 37 (38)
T ss_dssp HHHHHHHHHHHTHH------HHHHHHHHHH
T ss_pred HHHHHHHhccchhh------HHHHHHHHhc
Confidence 45667777765543 6888887655
No 102
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=31.84 E-value=76 Score=29.62 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-------hccCcHHHHHHHHHHHHhhhchHHHHHHHHH
Q 038150 10 EVKSLTSHLQAIQAVLDDAEE-------KQVKDKAVRHWLGRLKYASYDIEDVLDEWIT 61 (488)
Q Consensus 10 ~i~~l~~eL~~~~~~L~~a~~-------~~~~~~~v~~w~~~lr~~~yd~eD~id~~~~ 61 (488)
-+..|+.++..+..-++.+.. .+.....++.-.+.++++...+||++.-...
T Consensus 85 L~~~L~~eI~~f~~~l~~~~~~~e~~~~~~~~~~~i~~V~~~ik~LL~rId~aiPlinL 143 (302)
T PF05508_consen 85 LTKDLRREIDSFDERLEEAAEKEELSKSSENQKESIKKVERYIKDLLARIDDAIPLINL 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 344555555555555554443 3444566777888889999999998877664
No 103
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.44 E-value=3.8e+02 Score=26.26 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=28.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhh------hccCcHHHHHHHHHHHHhhhch
Q 038150 7 VEKEVK-SLTSHLQAIQAVLDDAEE------KQVKDKAVRHWLGRLKYASYDI 52 (488)
Q Consensus 7 v~~~i~-~l~~eL~~~~~~L~~a~~------~~~~~~~v~~w~~~lr~~~yd~ 52 (488)
+++.+. .++.||..|+..|+..-. .+..++....|.+.|.+.-++.
T Consensus 38 ~~~~~~~~~~~El~~lr~ll~~~~~~~~w~~~~~~~p~~~~l~~~L~~~g~~~ 90 (374)
T PRK14722 38 IERIVNDTVMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSA 90 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhccCcHHHHHHHHHHHCCCCH
Confidence 344443 778888888888875321 1224555677888777776654
No 104
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=29.13 E-value=84 Score=30.85 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=30.0
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHh
Q 038150 3 LVVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYA 48 (488)
Q Consensus 3 l~~~v~~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~ 48 (488)
-+..|.++|...+.+|..|+.|++..... =-|.|..+|..+
T Consensus 251 qLe~v~kdi~~a~keL~~m~~~i~~eKP~-----WkKiWE~EL~~V 291 (426)
T smart00806 251 QLETVQKELETARKELKKMEEYIDIEKPI-----WKKIWEAELDKV 291 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChH-----HHHHHHHHHHHH
Confidence 46778999999999999999999865221 136777776443
No 105
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.88 E-value=3.5e+02 Score=24.04 Aligned_cols=66 Identities=24% Similarity=0.339 Sum_probs=41.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHhhhccCc-HHH----------HHHHHHHHHhhhchHHHHHHHHHhhhhhhhcc
Q 038150 4 VVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKD-KAV----------RHWLGRLKYASYDIEDVLDEWITGRRKLQIEG 70 (488)
Q Consensus 4 ~~~v~~~i~~l~~eL~~~~~~L~~a~~~~~~~-~~v----------~~w~~~lr~~~yd~eD~id~~~~~~~~~~~~~ 70 (488)
+.+++++|...+.|++.+.+-+++.+....+. +.+ ++-.-..+.-.||++..++-|.. ++-+++.+
T Consensus 88 q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a~wy~d-yLGleie~ 164 (246)
T KOG4657|consen 88 QMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQDSADIHEAASWYND-YLGLEIEA 164 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH-hcCceeee
Confidence 45788999999999999988888755332111 111 11122224457888888888884 34445553
No 106
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=26.61 E-value=2.4e+02 Score=19.95 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhhchHHHHHHHH
Q 038150 6 GVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWI 60 (488)
Q Consensus 6 ~v~~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~yd~eD~id~~~ 60 (488)
|+...+..++..|..+..-+...+..+........-.+-+ ..-.|+++++.++.
T Consensus 2 g~g~~l~~l~~~l~~l~~~~~~~~~~d~~~~~Y~~A~klv-~~Ga~~~el~~~Cg 55 (70)
T PF10975_consen 2 GMGQRLAELEQQLKQLEDQQEELEQRDPDSPLYSQAIKLV-RQGASVEELMEECG 55 (70)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHH-HcCCCHHHHHHHcC
Confidence 6778888888888888888877776655555444433333 34688888887654
No 107
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=26.43 E-value=1.7e+02 Score=18.38 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHH
Q 038150 36 KAVRHWLGRLKYASYDIEDVLDEWIT 61 (488)
Q Consensus 36 ~~v~~w~~~lr~~~yd~eD~id~~~~ 61 (488)
....++..++..+..+-.|.+++|..
T Consensus 19 ~~~~~v~~~v~~Ll~~hpdLl~~F~~ 44 (47)
T PF02671_consen 19 ISRSEVIEEVSELLRGHPDLLEEFNR 44 (47)
T ss_dssp SCHHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCHHHHHHHHh
Confidence 33567888999999999999999874
No 108
>PRK11020 hypothetical protein; Provisional
Probab=25.76 E-value=3.2e+02 Score=21.28 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhhchHHHH
Q 038150 6 GVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVL 56 (488)
Q Consensus 6 ~v~~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~yd~eD~i 56 (488)
.++.||+.|.+.|...+.-+..|..+.. .+.+....+++-.+.-.|+-+-
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rgd-~~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRGD-AEKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999888888877755 4456677777666666665543
No 109
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=25.66 E-value=3.3e+02 Score=27.21 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhc----cCcHHHHHHHHHHHHhh
Q 038150 6 GVEKEVKSLTSHLQAIQAVLDDAEEKQ----VKDKAVRHWLGRLKYAS 49 (488)
Q Consensus 6 ~v~~~i~~l~~eL~~~~~~L~~a~~~~----~~~~~v~~w~~~lr~~~ 49 (488)
+...++..|++||..|+..|...-... ..++..+.|.+.|.+.-
T Consensus 127 ~~~~~~~~l~~el~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~g 174 (424)
T PRK05703 127 VVQKELDELRDELKELKNLLEDQLSGLRQVERIPPEFAELYKRLKRSG 174 (424)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHCC
Confidence 345678889999999998888654332 23444455555555443
No 110
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=24.68 E-value=2.6e+02 Score=21.25 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhhchHHHHHHHHH
Q 038150 12 KSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWIT 61 (488)
Q Consensus 12 ~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~yd~eD~id~~~~ 61 (488)
...+..|.-++..|+....... +-.-++|+..+|.....|-|-||....
T Consensus 16 ~~ck~~m~Pvkk~LkkL~~~~~-~l~~~e~a~~lk~~L~~IG~~I~~~l~ 64 (100)
T PF13907_consen 16 DECKELMRPVKKSLKKLKKPKK-GLPRKERAKILKKELLKIGDFIDSILK 64 (100)
T ss_pred HHHHHHhHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777776665522 222358898888888888888877663
No 111
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.04 E-value=1.2e+02 Score=27.80 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=40.3
Q ss_pred hcHHHHHHHHHHHHHH-HHHHHHHHhhh--ccCcHHHHHHHHHHHHhhhchHHHHHHHHHhh
Q 038150 5 VGVEKEVKSLTSHLQA-IQAVLDDAEEK--QVKDKAVRHWLGRLKYASYDIEDVLDEWITGR 63 (488)
Q Consensus 5 ~~v~~~i~~l~~eL~~-~~~~L~~a~~~--~~~~~~v~~w~~~lr~~~yd~eD~id~~~~~~ 63 (488)
-++.++++.++.+... .+.||.+.++- ++.++ .-+|.+.+|+.+...|+|-..|.+..
T Consensus 84 ~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~-~pew~~~Ir~~~~~~~~v~~r~~F~~ 144 (257)
T PF11348_consen 84 EELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDR-HPEWADIIRRAAPPAEDVRSRFSFSW 144 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ChHHHHHHHhcCCCHHHHHhhcccee
Confidence 4566778888888774 46777766543 22233 25688899999999999888776543
No 112
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.88 E-value=3.8e+02 Score=27.76 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-----hhccCcHHHHHHHHHHHHhhhc
Q 038150 8 EKEVKSLTSHLQAIQAVLDDAE-----EKQVKDKAVRHWLGRLKYASYD 51 (488)
Q Consensus 8 ~~~i~~l~~eL~~~~~~L~~a~-----~~~~~~~~v~~w~~~lr~~~yd 51 (488)
.+++..|+.||..|+.+|+.-- +...+++.-..+++.|.+.-++
T Consensus 259 ~~~l~~m~~El~~lR~lle~q~~~l~~~~~~~~P~~~~l~~~L~~~Gvs 307 (559)
T PRK12727 259 DEELKQLRGELALMRQMIEREMNRLTDERLRGSPVRAQALELMDDYGFD 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccChHHHHHHHHHHHCCCC
Confidence 3567788888888888887411 1123345455666666665554
No 113
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=22.48 E-value=4.3e+02 Score=24.61 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=11.3
Q ss_pred cccccCCCCCCCcc
Q 038150 139 SMAINGSEEPNATN 152 (488)
Q Consensus 139 ~~~~~g~~~~~~t~ 152 (488)
...++|..|.|||+
T Consensus 196 vi~~vGptGvGKTT 209 (282)
T TIGR03499 196 VIALVGPTGVGKTT 209 (282)
T ss_pred EEEEECCCCCCHHH
Confidence 34568999999998
No 114
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=22.33 E-value=2.3e+02 Score=18.27 Aligned_cols=48 Identities=17% Similarity=0.357 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhhchHHHHHHHHH
Q 038150 13 SLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWIT 61 (488)
Q Consensus 13 ~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~yd~eD~id~~~~ 61 (488)
+++.-|..+..+++........++ ....++.+++.+-.++++++++..
T Consensus 12 el~~pl~~i~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~ 59 (66)
T smart00388 12 ELRTPLTAIRGYLELLEDTELSEE-QREYLETILRSAERLLRLINDLLD 59 (66)
T ss_pred hccCcHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777666554232233 367777788888888888877763
No 115
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=21.77 E-value=1.3e+02 Score=23.89 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHhhhchHHHHHHHH
Q 038150 35 DKAVRHWLGRLKYASYDIEDVLDEWI 60 (488)
Q Consensus 35 ~~~v~~w~~~lr~~~yd~eD~id~~~ 60 (488)
...+..|-.++....||+||.+....
T Consensus 50 k~~v~~~~~~~~g~~~D~eya~~aVk 75 (118)
T PF10167_consen 50 KKEVQELSQELQGACYDLEYAISAVK 75 (118)
T ss_pred HHHHHHHHHHhccceecHHHHHHHHH
Confidence 45589999999999999999988766
No 116
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=20.92 E-value=5.8e+02 Score=26.05 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=11.6
Q ss_pred cccccCCCCCCCcc
Q 038150 139 SMAINGSEEPNATN 152 (488)
Q Consensus 139 ~~~~~g~~~~~~t~ 152 (488)
...++|..|.||||
T Consensus 258 Vi~LvGpnGvGKTT 271 (484)
T PRK06995 258 VFALMGPTGVGKTT 271 (484)
T ss_pred EEEEECCCCccHHH
Confidence 34568999999998
No 117
>PF14515 HOASN: Haem-oxygenase-associated N-terminal helices; PDB: 3BJD_B.
Probab=20.90 E-value=1.5e+02 Score=21.21 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=15.3
Q ss_pred chhhhHHHHHHHHHHHHHHH
Q 038150 104 FKQVFLRHDIANKIKEMNEE 123 (488)
Q Consensus 104 ~~~~l~~~~ia~~i~~i~~~ 123 (488)
......|+|||..+..+.++
T Consensus 73 ~~T~~TRRW~A~~iYrVEeR 92 (93)
T PF14515_consen 73 VPTAPTRRWMASAIYRVEER 92 (93)
T ss_dssp GGGHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhhc
Confidence 45667899999999766554
No 118
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.46 E-value=3.5e+02 Score=19.69 Aligned_cols=63 Identities=14% Similarity=0.365 Sum_probs=37.2
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhhchHH----HHHHHHHhhhhhhh
Q 038150 3 LVVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIED----VLDEWITGRRKLQI 68 (488)
Q Consensus 3 l~~~v~~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~yd~eD----~id~~~~~~~~~~~ 68 (488)
|+-.|+.+...+-.++...++-=++.+.+ . ..++.+ +..+|..+|+.|. +-+.|+-++.+++.
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~k-i-~~Qi~E-m~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~ 71 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHK-I-NSQIQE-MQQIRQKVYELEQAHRKMKQQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-H-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666665544444433 1 122222 4568888999885 45777777776654
Done!