Query 038150
Match_columns 488
No_of_seqs 340 out of 3981
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 13:41:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 9.5E-25 3.3E-29 232.6 11.5 273 156-451 394-722 (768)
2 3v47_A TOLL-like receptor 5B a 99.9 2.4E-24 8.1E-29 216.1 12.7 288 154-485 28-406 (455)
3 1ogq_A PGIP-2, polygalacturona 99.9 3.6E-25 1.2E-29 210.4 6.0 253 156-448 50-306 (313)
4 4fcg_A Uncharacterized protein 99.9 2E-24 6.7E-29 206.5 9.5 221 156-443 81-311 (328)
5 3rgz_A Protein brassinosteroid 99.9 3.3E-24 1.1E-28 228.5 11.1 271 156-452 343-699 (768)
6 4fcg_A Uncharacterized protein 99.9 2.5E-24 8.5E-29 205.8 9.1 208 234-482 95-309 (328)
7 3o6n_A APL1; leucine-rich repe 99.9 7.2E-24 2.5E-28 208.1 10.4 135 154-305 43-179 (390)
8 4eco_A Uncharacterized protein 99.9 8.4E-23 2.9E-27 212.8 16.4 301 148-485 239-598 (636)
9 3oja_B Anopheles plasmodium-re 99.9 1.5E-23 5.1E-28 217.1 9.3 134 155-305 50-185 (597)
10 1ogq_A PGIP-2, polygalacturona 99.9 4.2E-24 1.4E-28 203.0 4.6 251 179-487 50-304 (313)
11 4ecn_A Leucine-rich repeat pro 99.9 3E-22 1E-26 212.7 17.9 285 154-485 489-838 (876)
12 2id5_A Lingo-1, leucine rich r 99.9 2.3E-22 7.7E-27 202.9 13.2 248 154-444 30-283 (477)
13 4fmz_A Internalin; leucine ric 99.9 6.2E-22 2.1E-26 191.2 15.6 268 153-485 63-344 (347)
14 4fmz_A Internalin; leucine ric 99.9 1E-21 3.4E-26 189.7 15.9 272 153-485 41-322 (347)
15 2id5_A Lingo-1, leucine rich r 99.9 6E-23 2E-27 207.1 7.4 277 153-485 53-331 (477)
16 4eco_A Uncharacterized protein 99.9 2E-22 6.7E-27 210.0 11.5 289 149-484 199-546 (636)
17 3t6q_A CD180 antigen; protein- 99.9 1E-22 3.6E-27 211.7 9.2 277 156-485 278-558 (606)
18 2ft3_A Biglycan; proteoglycan, 99.9 4.2E-22 1.4E-26 191.1 12.4 263 156-485 54-331 (332)
19 1xku_A Decorin; proteoglycan, 99.9 6.9E-22 2.4E-26 189.4 12.6 243 156-444 52-304 (330)
20 3t6q_A CD180 antigen; protein- 99.9 4.2E-22 1.4E-26 207.1 11.7 254 154-444 31-361 (606)
21 3v47_A TOLL-like receptor 5B a 99.9 5.7E-22 2E-26 198.7 12.1 147 161-331 15-163 (455)
22 4ecn_A Leucine-rich repeat pro 99.9 1.7E-21 5.9E-26 206.8 15.3 292 149-485 441-787 (876)
23 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-21 8.1E-26 208.6 15.5 266 154-451 22-355 (844)
24 2ft3_A Biglycan; proteoglycan, 99.9 3.3E-21 1.1E-25 184.8 14.9 268 157-485 34-305 (332)
25 2z7x_B TOLL-like receptor 1, v 99.9 9.5E-22 3.2E-26 200.6 11.1 113 156-279 21-150 (520)
26 1xku_A Decorin; proteoglycan, 99.8 3.9E-21 1.3E-25 184.1 12.6 249 157-454 32-283 (330)
27 1o6v_A Internalin A; bacterial 99.8 1.3E-20 4.3E-25 189.4 16.8 242 154-443 66-341 (466)
28 2z7x_B TOLL-like receptor 1, v 99.8 1.1E-21 3.9E-26 200.0 9.1 126 159-305 3-129 (520)
29 3vq2_A TLR4, TOLL-like recepto 99.8 2.7E-21 9.2E-26 201.0 11.6 136 154-305 30-167 (606)
30 1ziw_A TOLL-like receptor 3; i 99.8 4.2E-21 1.4E-25 202.4 12.7 134 154-305 23-159 (680)
31 3bz5_A Internalin-J, INLJ; leu 99.8 1.1E-20 3.8E-25 188.5 14.3 232 155-450 41-303 (457)
32 3vq2_A TLR4, TOLL-like recepto 99.8 1.4E-21 4.8E-26 203.2 8.1 269 155-485 284-556 (606)
33 1o6v_A Internalin A; bacterial 99.8 1.6E-20 5.5E-25 188.6 15.0 121 154-299 44-164 (466)
34 2z81_A CD282 antigen, TOLL-lik 99.8 1E-20 3.5E-25 194.3 13.8 91 348-450 332-426 (549)
35 3o6n_A APL1; leucine-rich repe 99.8 1E-20 3.5E-25 185.7 12.8 245 177-451 43-312 (390)
36 3oja_B Anopheles plasmodium-re 99.8 1.1E-20 3.8E-25 195.6 12.7 279 177-485 49-356 (597)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.9E-20 6.6E-25 192.6 14.2 126 155-303 51-181 (562)
38 2z66_A Variable lymphocyte rec 99.8 8E-21 2.7E-25 180.0 9.5 245 161-444 12-259 (306)
39 3zyi_A Leucine-rich repeat-con 99.8 2.1E-20 7.3E-25 186.9 12.8 242 160-444 58-301 (452)
40 3zyj_A Leucine-rich repeat-con 99.8 2.9E-20 9.9E-25 185.3 12.9 241 159-444 46-290 (440)
41 1ozn_A Reticulon 4 receptor; N 99.8 9.8E-21 3.4E-25 177.4 8.5 222 159-423 14-238 (285)
42 2z81_A CD282 antigen, TOLL-lik 99.8 3.6E-20 1.2E-24 190.2 13.2 126 346-485 357-508 (549)
43 3j0a_A TOLL-like receptor 5; m 99.8 4.5E-20 1.5E-24 198.6 13.5 277 160-484 8-348 (844)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-20 3.7E-25 194.6 7.9 129 156-305 31-160 (562)
45 3bz5_A Internalin-J, INLJ; leu 99.8 1.4E-19 4.9E-24 180.5 15.0 208 174-444 37-244 (457)
46 2z63_A TOLL-like receptor 4, v 99.8 2.7E-20 9.3E-25 192.0 9.9 59 156-216 52-111 (570)
47 3zyi_A Leucine-rich repeat-con 99.8 2.3E-19 7.8E-24 179.5 14.8 245 181-485 56-301 (452)
48 2z80_A TOLL-like receptor 2, v 99.8 2.3E-20 7.9E-25 180.5 6.9 250 156-444 52-312 (353)
49 2z80_A TOLL-like receptor 2, v 99.8 4.6E-20 1.6E-24 178.4 8.7 232 155-422 75-313 (353)
50 2z63_A TOLL-like receptor 4, v 99.8 2.9E-20 1E-24 191.8 7.3 252 154-444 26-358 (570)
51 1ziw_A TOLL-like receptor 3; i 99.8 2.9E-19 9.9E-24 188.3 15.0 255 161-444 9-283 (680)
52 1wwl_A Monocyte differentiatio 99.8 6.1E-21 2.1E-25 181.2 1.1 247 157-444 44-307 (312)
53 3zyj_A Leucine-rich repeat-con 99.8 5.5E-19 1.9E-23 176.1 14.6 244 181-485 45-290 (440)
54 2z66_A Variable lymphocyte rec 99.8 1.2E-19 4E-24 171.9 9.3 244 182-485 10-259 (306)
55 1wwl_A Monocyte differentiatio 99.8 6.3E-20 2.2E-24 174.2 5.7 250 175-485 39-307 (312)
56 3o53_A Protein LRIM1, AGAP0063 99.8 9.7E-20 3.3E-24 173.3 4.5 240 176-485 31-273 (317)
57 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-18 7.9E-23 177.0 13.4 233 156-485 61-295 (622)
58 4g8a_A TOLL-like receptor 4; l 99.8 8.6E-19 2.9E-23 183.1 10.4 133 154-303 50-185 (635)
59 2ca6_A RAN GTPase-activating p 99.8 7.3E-20 2.5E-24 179.3 1.2 256 169-444 22-314 (386)
60 1ozn_A Reticulon 4 receptor; N 99.8 4.5E-18 1.5E-22 159.2 13.2 219 182-444 14-236 (285)
61 3oja_A Leucine-rich immune mol 99.8 2.4E-19 8.4E-24 180.4 4.2 214 178-444 33-248 (487)
62 3o53_A Protein LRIM1, AGAP0063 99.7 9.8E-19 3.4E-23 166.3 7.8 238 179-485 10-248 (317)
63 1h6u_A Internalin H; cell adhe 99.7 1.4E-17 4.9E-22 157.5 14.3 196 177-451 39-234 (308)
64 3oja_A Leucine-rich immune mol 99.7 2.4E-18 8.3E-23 173.1 8.8 223 196-485 21-248 (487)
65 1z7x_W Ribonuclease inhibitor; 99.7 9.9E-20 3.4E-24 182.7 -2.2 243 156-421 28-295 (461)
66 1jl5_A Outer protein YOPM; leu 99.7 6.2E-18 2.1E-22 168.5 10.0 240 155-450 10-273 (454)
67 2z62_A TOLL-like receptor 4, v 99.7 3.5E-18 1.2E-22 159.2 7.3 119 169-305 20-138 (276)
68 3rfs_A Internalin B, repeat mo 99.7 3.9E-17 1.3E-21 151.7 13.7 202 201-451 37-240 (272)
69 1z7x_W Ribonuclease inhibitor; 99.7 2.4E-19 8.4E-24 179.9 -1.4 265 157-444 86-381 (461)
70 2o6q_A Variable lymphocyte rec 99.7 8.1E-17 2.8E-21 149.4 15.2 88 345-444 128-216 (270)
71 2z62_A TOLL-like receptor 4, v 99.7 2.7E-17 9.1E-22 153.2 11.0 203 205-444 28-235 (276)
72 3qfl_A MLA10; coiled-coil, (CC 99.7 3.6E-18 1.2E-22 134.2 3.9 64 1-64 18-83 (115)
73 4glp_A Monocyte differentiatio 99.7 2E-17 6.8E-22 156.8 9.8 231 179-444 64-305 (310)
74 1p9a_G Platelet glycoprotein I 99.7 3.4E-17 1.2E-21 153.4 11.1 199 175-444 6-206 (290)
75 2ast_B S-phase kinase-associat 99.7 1.9E-18 6.5E-23 165.8 2.2 223 158-420 49-282 (336)
76 1jl5_A Outer protein YOPM; leu 99.7 6.3E-17 2.2E-21 161.2 12.6 216 179-444 131-368 (454)
77 2ast_B S-phase kinase-associat 99.7 6.1E-18 2.1E-22 162.3 5.1 226 179-443 47-282 (336)
78 3rfs_A Internalin B, repeat mo 99.7 3.4E-17 1.2E-21 152.0 9.9 73 344-435 175-248 (272)
79 2ca6_A RAN GTPase-activating p 99.7 4E-18 1.4E-22 166.9 3.6 270 154-444 30-341 (386)
80 1h6u_A Internalin H; cell adhe 99.7 1E-16 3.5E-21 151.6 12.2 192 201-485 37-228 (308)
81 2xwt_C Thyrotropin receptor; s 99.7 1.8E-17 6.3E-22 150.8 6.6 200 206-487 32-239 (239)
82 1p9a_G Platelet glycoprotein I 99.7 5E-17 1.7E-21 152.2 9.3 199 154-422 8-207 (290)
83 2o6q_A Variable lymphocyte rec 99.7 9.6E-17 3.3E-21 148.8 10.2 200 158-424 18-219 (270)
84 3g06_A SSPH2 (leucine-rich rep 99.7 3.5E-16 1.2E-20 160.8 12.4 214 154-444 79-295 (622)
85 3goz_A Leucine-rich repeat-con 99.7 6E-17 2.1E-21 156.9 5.8 247 171-444 14-295 (362)
86 4glp_A Monocyte differentiatio 99.6 3E-16 1E-20 148.6 9.9 206 241-485 89-305 (310)
87 1h6t_A Internalin B; cell adhe 99.6 4.3E-16 1.5E-20 146.0 10.5 149 239-422 64-212 (291)
88 2xwt_C Thyrotropin receptor; s 99.6 1.8E-16 6.3E-21 144.2 6.0 207 167-444 22-237 (239)
89 4g8a_A TOLL-like receptor 4; l 99.6 6.8E-16 2.3E-20 161.1 10.7 169 260-444 390-578 (635)
90 1m9s_A Internalin B; cell inva 99.6 1.4E-15 4.9E-20 156.1 12.8 173 201-424 39-211 (605)
91 3m19_A Variable lymphocyte rec 99.6 3.1E-15 1.1E-19 137.1 13.4 62 243-304 35-96 (251)
92 3ogk_B Coronatine-insensitive 99.6 1.1E-16 3.7E-21 165.9 2.8 213 237-485 214-447 (592)
93 3goz_A Leucine-rich repeat-con 99.6 6.9E-17 2.4E-21 156.5 1.2 246 153-425 19-299 (362)
94 3ogk_B Coronatine-insensitive 99.6 4E-16 1.4E-20 161.6 4.0 110 176-302 189-304 (592)
95 1h6t_A Internalin B; cell adhe 99.6 9.8E-15 3.3E-19 136.7 12.1 176 238-450 41-216 (291)
96 3m19_A Variable lymphocyte rec 99.6 1.6E-14 5.3E-19 132.4 13.0 174 243-444 14-190 (251)
97 2p1m_B Transport inhibitor res 99.6 1E-15 3.5E-20 158.6 4.8 61 156-216 105-167 (594)
98 1xeu_A Internalin C; cellular 99.6 8.2E-15 2.8E-19 135.0 9.6 148 238-444 36-183 (263)
99 1m9s_A Internalin B; cell inva 99.5 6.7E-15 2.3E-19 151.1 8.7 176 238-450 38-213 (605)
100 4ay9_X Follicle-stimulating ho 99.5 6.6E-15 2.3E-19 141.8 7.5 101 161-278 14-115 (350)
101 4ezg_A Putative uncharacterize 99.5 1.1E-14 3.6E-19 128.2 8.1 151 240-444 41-192 (197)
102 4ezg_A Putative uncharacterize 99.5 2.6E-14 8.8E-19 125.7 9.6 153 201-422 40-193 (197)
103 1dce_A Protein (RAB geranylger 99.5 1.2E-15 4.3E-20 155.6 0.6 204 176-440 346-567 (567)
104 3cvr_A Invasion plasmid antige 99.5 3.4E-14 1.2E-18 144.3 10.6 179 205-450 59-247 (571)
105 1dce_A Protein (RAB geranylger 99.5 7.7E-17 2.6E-21 164.5 -9.6 204 202-481 346-567 (567)
106 2p1m_B Transport inhibitor res 99.5 6.8E-16 2.3E-20 159.9 -2.9 231 177-442 103-347 (594)
107 3cvr_A Invasion plasmid antige 99.5 2.7E-14 9.3E-19 145.0 6.7 181 157-427 60-247 (571)
108 4ay9_X Follicle-stimulating ho 99.5 1.1E-13 3.6E-18 133.3 9.4 242 176-483 7-255 (350)
109 2o6s_A Variable lymphocyte rec 99.4 7.2E-14 2.4E-18 124.0 5.9 106 179-302 28-135 (208)
110 1xeu_A Internalin C; cellular 99.4 9.3E-14 3.2E-18 127.9 6.1 170 177-400 17-186 (263)
111 2o6s_A Variable lymphocyte rec 99.4 7.7E-13 2.6E-17 117.3 11.7 154 243-451 28-183 (208)
112 4b8c_D Glucose-repressible alc 99.4 5.2E-14 1.8E-18 148.1 4.7 195 153-420 170-369 (727)
113 3e6j_A Variable lymphocyte rec 99.4 1.2E-12 4.1E-17 117.9 12.3 131 243-422 40-171 (229)
114 2v9t_B SLIT homolog 2 protein 99.4 1.1E-12 3.7E-17 117.4 9.8 59 243-302 32-91 (220)
115 3e6j_A Variable lymphocyte rec 99.4 1.6E-12 5.6E-17 117.0 10.6 149 245-444 21-170 (229)
116 2xot_A Amphoterin-induced prot 99.4 5.6E-13 1.9E-17 128.8 7.0 62 346-421 132-200 (361)
117 2v9t_B SLIT homolog 2 protein 99.4 2.1E-12 7.2E-17 115.5 9.8 148 246-444 14-163 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 1.8E-12 6.2E-17 115.9 9.1 130 245-422 34-165 (220)
119 2v70_A SLIT-2, SLIT homolog 2 99.3 3.5E-12 1.2E-16 114.0 9.6 150 245-444 13-164 (220)
120 2ell_A Acidic leucine-rich nuc 99.3 2.7E-12 9.1E-17 109.6 7.9 132 154-305 22-161 (168)
121 2xot_A Amphoterin-induced prot 99.3 3.9E-12 1.3E-16 122.9 7.6 171 207-444 20-200 (361)
122 4b8c_D Glucose-repressible alc 99.3 1.9E-12 6.4E-17 136.3 3.9 115 171-305 216-330 (727)
123 2je0_A Acidic leucine-rich nuc 99.2 3.3E-12 1.1E-16 106.7 3.9 125 155-299 16-148 (149)
124 2ell_A Acidic leucine-rich nuc 99.2 1.3E-11 4.3E-16 105.4 7.4 41 380-421 114-158 (168)
125 2je0_A Acidic leucine-rich nuc 99.2 1.9E-11 6.4E-16 102.1 8.2 128 243-419 17-149 (149)
126 1ds9_A Outer arm dynein; leuci 99.2 1.6E-12 5.4E-17 114.3 -0.8 157 201-416 14-180 (198)
127 1w8a_A SLIT protein; signaling 99.2 1.4E-11 4.9E-16 107.5 4.0 129 159-305 11-140 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.1 2.2E-11 7.6E-16 104.7 3.8 127 154-302 17-151 (176)
129 1w8a_A SLIT protein; signaling 99.1 7.7E-11 2.6E-15 102.8 7.2 128 208-400 11-140 (192)
130 1a9n_A U2A', U2A'; complex (nu 99.1 1.1E-10 3.8E-15 100.3 5.6 40 381-421 108-151 (176)
131 1ds9_A Outer arm dynein; leuci 99.1 3.9E-12 1.3E-16 111.8 -3.7 141 197-392 40-180 (198)
132 2wfh_A SLIT homolog 2 protein 99.1 1.2E-10 4.2E-15 101.6 5.7 125 160-304 14-139 (193)
133 2wfh_A SLIT homolog 2 protein 99.1 4.2E-10 1.4E-14 98.1 9.0 127 208-399 13-139 (193)
134 2o6r_A Variable lymphocyte rec 99.0 3.2E-10 1.1E-14 97.5 6.4 126 159-305 10-138 (177)
135 3sb4_A Hypothetical leucine ri 99.0 1.3E-09 4.5E-14 103.7 8.8 252 178-453 24-316 (329)
136 2o6r_A Variable lymphocyte rec 98.9 2.8E-09 9.5E-14 91.5 8.7 39 383-422 97-136 (177)
137 2r9u_A Variable lymphocyte rec 98.8 1.7E-09 5.9E-14 92.5 3.2 64 238-303 52-117 (174)
138 3un9_A NLR family member X1; l 98.8 9.7E-10 3.3E-14 106.1 1.3 70 345-422 178-251 (372)
139 3un9_A NLR family member X1; l 98.8 1.7E-09 5.9E-14 104.3 2.3 52 341-400 202-253 (372)
140 3sb4_A Hypothetical leucine ri 98.7 1.8E-08 6.1E-13 95.8 7.7 64 385-453 225-292 (329)
141 2r9u_A Variable lymphocyte rec 98.7 2.6E-08 8.9E-13 85.1 7.2 82 350-444 33-116 (174)
142 3g39_A Variable lymphocyte rec 98.7 2.8E-08 9.6E-13 84.5 7.1 83 350-444 30-113 (170)
143 3g39_A Variable lymphocyte rec 98.7 1.2E-08 4.2E-13 86.8 4.7 104 181-305 11-116 (170)
144 2ra8_A Uncharacterized protein 98.5 1.4E-07 4.8E-12 90.2 7.1 66 348-422 250-319 (362)
145 2ra8_A Uncharacterized protein 98.5 6.6E-08 2.3E-12 92.5 3.6 200 198-421 132-341 (362)
146 2ifg_A High affinity nerve gro 98.4 1.8E-07 6.2E-12 89.5 4.3 95 167-279 20-115 (347)
147 2ifg_A High affinity nerve gro 98.4 3E-07 1E-11 87.9 5.5 104 183-305 12-117 (347)
148 3e4g_A ATP synthase subunit S, 98.2 1.6E-07 5.4E-12 79.1 -0.3 89 349-449 60-155 (176)
149 4fdw_A Leucine rich hypothetic 98.2 3.8E-06 1.3E-10 81.6 9.4 226 175-450 132-361 (401)
150 3e4g_A ATP synthase subunit S, 98.1 4E-07 1.4E-11 76.6 0.5 87 323-425 62-154 (176)
151 4fdw_A Leucine rich hypothetic 98.0 2.7E-05 9.2E-10 75.6 11.0 222 178-454 112-342 (401)
152 3rw6_A Nuclear RNA export fact 97.9 1.1E-05 3.9E-10 73.0 5.8 108 177-299 139-259 (267)
153 1io0_A Tropomodulin; LRR prote 97.7 5.7E-06 2E-10 71.1 1.0 94 339-440 25-128 (185)
154 1io0_A Tropomodulin; LRR prote 97.5 1.9E-05 6.4E-10 67.9 1.4 70 344-421 87-162 (185)
155 3rw6_A Nuclear RNA export fact 97.4 0.00017 5.7E-09 65.3 5.2 83 176-275 167-259 (267)
156 4fs7_A Uncharacterized protein 97.2 0.0019 6.5E-08 62.5 11.6 68 381-453 292-361 (394)
157 4fs7_A Uncharacterized protein 96.7 0.0022 7.4E-08 62.1 6.6 215 174-442 157-375 (394)
158 4gt6_A Cell surface protein; l 96.4 0.0074 2.5E-07 58.3 8.0 55 382-440 284-341 (394)
159 4gt6_A Cell surface protein; l 94.2 0.2 6.7E-06 48.1 9.8 83 345-444 283-368 (394)
160 1pgv_A TMD-1, tropomodulin TMD 94.1 0.02 6.8E-07 48.9 2.2 72 341-420 89-167 (197)
161 4h09_A Hypothetical leucine ri 93.6 0.67 2.3E-05 44.0 12.3 70 381-454 281-352 (379)
162 2a5y_B CED-4; apoptosis; HET: 93.5 0.013 4.4E-07 59.3 -0.1 38 76-118 368-418 (549)
163 1pgv_A TMD-1, tropomodulin TMD 93.1 0.11 3.8E-06 44.2 5.1 44 378-421 62-109 (197)
164 4h09_A Hypothetical leucine ri 92.6 0.96 3.3E-05 42.9 11.7 60 345-418 281-341 (379)
165 3rfe_A Platelet glycoprotein I 89.2 0.71 2.4E-05 36.3 5.8 34 244-278 32-66 (130)
166 1vt4_I APAF-1 related killer D 86.8 0.12 3.9E-06 55.5 -0.2 35 81-116 365-400 (1221)
167 3rfe_A Platelet glycoprotein I 86.6 0.65 2.2E-05 36.5 4.1 35 386-421 31-66 (130)
168 3sfz_A APAF-1, apoptotic pepti 83.5 1 3.6E-05 50.1 5.5 35 81-116 374-408 (1249)
169 3okq_A BUD site selection prot 72.0 6.1 0.00021 30.8 5.0 42 3-49 55-96 (141)
170 4abx_A DNA repair protein RECN 60.6 38 0.0013 27.7 8.2 34 32-65 83-116 (175)
171 2lw1_A ABC transporter ATP-bin 58.2 41 0.0014 24.0 7.0 58 4-61 24-81 (89)
172 3viq_A SWI5-dependent recombin 51.6 38 0.0013 25.9 6.1 52 5-56 10-63 (122)
173 1z6t_A APAF-1, apoptotic prote 51.3 4.4 0.00015 40.9 1.1 34 81-115 374-407 (591)
174 3ro3_B Minsc, peptide of prote 37.1 22 0.00077 17.4 1.7 13 36-48 8-20 (22)
175 3kdw_A Putative sugar binding 36.1 26 0.00089 29.1 3.1 49 8-56 124-179 (221)
176 3mtu_A Tropomyosin alpha-1 cha 34.4 43 0.0015 23.0 3.7 25 6-30 6-30 (75)
177 1wmi_B RELB, hypothetical prot 34.2 31 0.0011 22.1 2.5 49 6-54 8-61 (67)
178 1pq1_B BCL2-like protein 11; B 33.7 55 0.0019 17.9 3.1 22 110-131 5-26 (33)
179 2w6b_A RHO guanine nucleotide 32.7 59 0.002 20.5 3.6 24 4-27 12-35 (56)
180 1i6z_A BAG-family molecular ch 29.0 2E+02 0.0068 22.2 10.9 59 2-60 21-80 (135)
181 3l4f_A RHO guanine nucleotide 27.3 99 0.0034 20.1 4.1 46 5-50 10-56 (61)
182 3kj0_B BCL-2-like protein 11; 24.8 80 0.0028 16.2 3.0 18 110-127 7-24 (27)
183 2qfa_C Inner centromere protei 23.9 85 0.0029 19.1 3.1 25 20-50 18-42 (47)
184 3v86_A De novo design helix; c 22.0 89 0.003 15.7 3.7 22 6-27 4-25 (27)
185 3lqv_P Splicing factor 3B subu 20.3 24 0.00083 20.6 0.2 9 95-103 30-38 (39)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=9.5e-25 Score=232.62 Aligned_cols=273 Identities=16% Similarity=0.183 Sum_probs=159.2
Q ss_pred ccceeeEEEEecC-CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc-
Q 038150 156 EKVRHLMLIFSKA-ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL- 233 (488)
Q Consensus 156 ~~vr~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l- 233 (488)
..++.+.+..+.. +.+|..+.++++|++|++.+| .+.+ .+|..+..+++|++|++++|.+ .+.+|..+..+
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~L~L~~n~l-----~~~~p~~~~~l~ 466 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSG-TIPSSLGSLSKLRDLKLWLNML-----EGEIPQELMYVK 466 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-EEES-CCCGGGGGCTTCCEEECCSSCC-----CSCCCGGGGGCT
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCC-cccC-cccHHHhcCCCCCEEECCCCcc-----cCcCCHHHcCCC
Confidence 3456666665555 355666667777777777776 4443 4555567777777777777764 44344333222
Q ss_pred --------------cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCce
Q 038150 234 --------------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF 299 (488)
Q Consensus 234 --------------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 299 (488)
.+|..++++++|++|++++|.....+|..++.+++|++|++++|.+.+.+|..++++++|++|++.
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 344445555555555555544333455555555555555555555444445555555555555555
Q ss_pred eecCCCCCCCCcccCcccccCCCcccccc------ccc---------------ccCC------------------CChhh
Q 038150 300 HVSAGGGVDGRKACRLESLKNLEHLQVCG------ISR---------------LGDV------------------SDVGE 340 (488)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~------~~~---------------~~~~------------------~~~~~ 340 (488)
+|.+.+.. +..+.....+..+.... +.. +.+. .....
T Consensus 547 ~N~l~g~i----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 547 TNLFNGTI----PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp SSEEESBC----CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred CCccCCcC----ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 44443321 11111110000000000 000 0000 00000
Q ss_pred hhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCC
Q 038150 341 AKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSC 420 (488)
Q Consensus 341 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 420 (488)
..+..+..+++|+.|++++|.+. ..+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~------------g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLS------------GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCB------------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cCchhhhccccccEEECcCCccc------------ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence 11234556778888899888875 456778888899999999999888778999999999999999999
Q ss_pred CCCCCCCC-CCCCCCcCeeeecccccceeeCc
Q 038150 421 ENCEQLPP-LGKLQSLENLHIWRMESVKRVGD 451 (488)
Q Consensus 421 ~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~ 451 (488)
...+.+|. ++.+++|++|++++|.-...+|.
T Consensus 691 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 88888887 88889999999998885555654
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.4e-24 Score=216.14 Aligned_cols=288 Identities=17% Similarity=0.132 Sum_probs=175.9
Q ss_pred ccccceeeEEEEecCCcC-ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 154 LDEKVRHLMLIFSKAASL-PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
....+++++++.+....+ |..+.++++|++|++.+|. +.....+..|.++++|++|+|++|.+ .+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l-----~~-------- 93 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQF-----LQ-------- 93 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTT-----CE--------
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCcc-----Cc--------
Confidence 447789999998888666 6678899999999999973 33214456688999999999999984 32
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCchh--hccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecCCCCCCC
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELPEG--IGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAGGGVDG 309 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~--l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~ 309 (488)
..|..++++++|++|++++|......|.. ++.+++|++|++++|.+....|.. ++++++|++|++.+|.+.+..+.
T Consensus 94 -~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 94 -LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp -ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred -cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 33556777777888888776644434444 677777888888777755544554 67777777777777765542211
Q ss_pred CcccC---------------------------cccccCCCcccccccccccCCCChh-----------------------
Q 038150 310 RKACR---------------------------LESLKNLEHLQVCGISRLGDVSDVG----------------------- 339 (488)
Q Consensus 310 ~~~~~---------------------------~~~l~~L~~L~~L~~~~~~~~~~~~----------------------- 339 (488)
..... ...+..+++|+.|++....-.....
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence 10000 0001122344444443321100000
Q ss_pred ------------------------------------hhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCC
Q 038150 340 ------------------------------------EAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALR 383 (488)
Q Consensus 340 ------------------------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (488)
...+..+..+++|+.|++++|.+. ...+..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~ 320 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN------------KIDDNAFW 320 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC------------EECTTTTT
T ss_pred ccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc------------ccChhHhc
Confidence 001223444555555555555543 22244566
Q ss_pred CCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCC
Q 038150 384 PPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHG 462 (488)
Q Consensus 384 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 462 (488)
.+++|+.|++++|.+....|..++.+++|++|++++|......|. ++.+++|++|++++|. ++.++.+.
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~--------- 390 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGI--------- 390 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTT---------
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhH---------
Confidence 666777777777766654456666677777777777765554444 6667777777776665 55554432
Q ss_pred CCCCCcccccCcccccccccccc
Q 038150 463 SSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 463 ~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
.+.+++|++|.+.++|
T Consensus 391 -------~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 391 -------FDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -------TTTCTTCCEEECCSSC
T ss_pred -------hccCCcccEEEccCCC
Confidence 3468899999998654
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=3.6e-25 Score=210.39 Aligned_cols=253 Identities=20% Similarity=0.186 Sum_probs=208.8
Q ss_pred ccceeeEEEEecCC---cCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 156 EKVRHLMLIFSKAA---SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 156 ~~vr~l~l~~~~~~---~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
.+|+++++..+... .+|..+.++++|++|++.+++.+.+ .+|..|.++++|++|++++|.+ .+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l-----~~-------- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNV-----SG-------- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECC-----EE--------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCee-----CC--------
Confidence 57899999998885 6899999999999999996225554 5677799999999999999995 44
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcc-cccccCceeecCCCCCCCCc
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLT-GLRTLGEFHVSAGGGVDGRK 311 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~-~L~~L~l~~~~~~~~~~~~~ 311 (488)
.+|..++++++|++|++++|.....+|..++.+++|++|++++|.+...+|..+++++ +|++|++.+|.+.+.
T Consensus 116 -~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~----- 189 (313)
T 1ogq_A 116 -AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK----- 189 (313)
T ss_dssp -ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-----
T ss_pred -cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-----
Confidence 5778899999999999999886668999999999999999999997768899999998 999999999876532
Q ss_pred ccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEE
Q 038150 312 ACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKEL 391 (488)
Q Consensus 312 ~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 391 (488)
....+..++ |+.|.+....-. ...+..+..+++|+.|++++|.+... +..+..+++|+.|
T Consensus 190 --~~~~~~~l~-L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~l~~L~~L 249 (313)
T 1ogq_A 190 --IPPTFANLN-LAFVDLSRNMLE----GDASVLFGSDKNTQKIHLAKNSLAFD-------------LGKVGLSKNLNGL 249 (313)
T ss_dssp --CCGGGGGCC-CSEEECCSSEEE----ECCGGGCCTTSCCSEEECCSSEECCB-------------GGGCCCCTTCCEE
T ss_pred --CChHHhCCc-ccEEECcCCccc----CcCCHHHhcCCCCCEEECCCCceeee-------------cCcccccCCCCEE
Confidence 223344444 777777543211 11346778899999999999987532 2347788999999
Q ss_pred EeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeeccccccee
Q 038150 392 EIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKR 448 (488)
Q Consensus 392 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 448 (488)
++++|.+...+|.++..+++|++|++++|...+.+|..+.+++|+.|++.+|+.+-.
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 999999986699999999999999999999888899888999999999999984443
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2e-24 Score=206.53 Aligned_cols=221 Identities=22% Similarity=0.281 Sum_probs=160.9
Q ss_pred ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150 156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL 235 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l 235 (488)
..++.+++..+....+|..+.++++|++|++.+| .+. .+|..+.++++|++|+|++|. +. .+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n~------l~---------~l 142 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARNP------LR---------AL 142 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESCC------CC---------CC
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCCc------cc---------cC
Confidence 4567777777777777777777777777777776 444 345556777777777777776 33 45
Q ss_pred chhhhhhccCcEeecCCCCCcccCchhhcc---------ccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCC
Q 038150 236 PETLCELYNLEKLDISDCFNLKELPEGIGK---------LINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGG 306 (488)
Q Consensus 236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~---------L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~ 306 (488)
|..++++++|++|++++|...+.+|..++. +++|++|++++|.+ ..+|..++++++|++|++.+|.+.+
T Consensus 143 p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCc-
Confidence 666777777777777777666677766554 66777777776663 3666666667777777666654332
Q ss_pred CCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCC
Q 038150 307 VDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPL 386 (488)
Q Consensus 307 ~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (488)
++ ..+..+++|+.|++++|.+. ..+|..+..++
T Consensus 221 ----------------------------l~-------~~l~~l~~L~~L~Ls~n~~~------------~~~p~~~~~l~ 253 (328)
T 4fcg_A 221 ----------------------------LG-------PAIHHLPKLEELDLRGCTAL------------RNYPPIFGGRA 253 (328)
T ss_dssp ----------------------------CC-------GGGGGCTTCCEEECTTCTTC------------CBCCCCTTCCC
T ss_pred ----------------------------Cc-------hhhccCCCCCEEECcCCcch------------hhhHHHhcCCC
Confidence 11 24566778888888887764 44567788899
Q ss_pred CCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeeccc
Q 038150 387 NLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRM 443 (488)
Q Consensus 387 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~ 443 (488)
+|+.|++++|...+.+|.+++.+++|++|+|++|...+.+|. ++.+++|+.+.+..+
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 999999999888777898899999999999999999998887 889999999888654
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=3.3e-24 Score=228.48 Aligned_cols=271 Identities=17% Similarity=0.152 Sum_probs=190.8
Q ss_pred ccceeeEEEEecCC-cCcccccccc-Ccceecccccc-------------------------hhhhhhHHHHHhcCCccc
Q 038150 156 EKVRHLMLIFSKAA-SLPISTLRVK-RMRTLLINDHS-------------------------LLNAAILEELFRELTSLR 208 (488)
Q Consensus 156 ~~vr~l~l~~~~~~-~~~~~~~~~~-~Lr~L~l~~~~-------------------------~~~~~~~~~~~~~l~~Lr 208 (488)
..++.+.+..+... .+|..+..++ +|++|++++|. .+.+ .+|..+.++++|+
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELV 421 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE-ECCGGGGGCTTCC
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc-ccCHHHhcCCCCC
Confidence 45556666655542 4555554444 55555555541 2222 3344455555555
Q ss_pred eeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCC
Q 038150 209 ALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIG 288 (488)
Q Consensus 209 ~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~ 288 (488)
+|++++|.+ .+ .+|..++.+++|++|++++|.....+|..++.+++|++|++++|.+...+|..++
T Consensus 422 ~L~Ls~N~l-----~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 422 SLHLSFNYL-----SG---------TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp EEECCSSEE-----ES---------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred EEECcCCcc-----cC---------cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 555555553 22 5677888888899999988876668888888888999999988887777888888
Q ss_pred CcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhh
Q 038150 289 RLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGE 368 (488)
Q Consensus 289 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 368 (488)
++++|++|++.+|.+.+. ....+..+++|+.|.+....-. ...+..+..+++|+.|++++|.+.+.++.
T Consensus 488 ~l~~L~~L~L~~N~l~~~-------~p~~~~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGE-------IPKWIGRLENLAILKLSNNSFS----GNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GCTTCCEEECCSSCCCSC-------CCGGGGGCTTCCEEECCSSCCE----EECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cCCCCCEEEccCCccCCc-------CChHHhcCCCCCEEECCCCccc----CcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 889999998888877642 2334556677777777544321 12346778889999999999887644332
Q ss_pred hcc----------------------------------------------------------ccchHHHhhhCCCCCCCCE
Q 038150 369 RRK----------------------------------------------------------NEDNQLLLEALRPPLNLKE 390 (488)
Q Consensus 369 ~~~----------------------------------------------------------~~~~~~~~~~~~~~~~L~~ 390 (488)
... +......|..+..+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 100 1111223445667789999
Q ss_pred EEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCcc
Q 038150 391 LEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDE 452 (488)
Q Consensus 391 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~ 452 (488)
|++++|.+.+.+|.+++.+++|+.|++++|...+.+|. ++.+++|+.|++++|.-...+|..
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 99999999987999999999999999999999989997 999999999999999855566654
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.5e-24 Score=205.80 Aligned_cols=208 Identities=21% Similarity=0.250 Sum_probs=138.3
Q ss_pred cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150 234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC 313 (488)
Q Consensus 234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 313 (488)
.+|..++++++|++|++++|. +..+|..++++++|++|++++|.+. .+|..++++++|++|++.+|...+.. +.
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~----p~ 168 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL----PE 168 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCC----CS
T ss_pred hcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcccc----Ch
Confidence 344444455555555555543 3355555555555555555555432 44555555555555555554433321 11
Q ss_pred Cc------ccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCC
Q 038150 314 RL------ESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLN 387 (488)
Q Consensus 314 ~~------~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (488)
.+ ..+..+++|+.|.+....- . .++..+..+++|+.|++++|.+. .+|..+..+++
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l-~----~lp~~l~~l~~L~~L~L~~N~l~-------------~l~~~l~~l~~ 230 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGI-R----SLPASIANLQNLKSLKIRNSPLS-------------ALGPAIHHLPK 230 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECC-C----CCCGGGGGCTTCCEEEEESSCCC-------------CCCGGGGGCTT
T ss_pred hHhhccchhhhccCCCCCEEECcCCCc-C----cchHhhcCCCCCCEEEccCCCCC-------------cCchhhccCCC
Confidence 11 1133455555555433221 1 12245778899999999999874 34567888999
Q ss_pred CCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCC
Q 038150 388 LKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSS 466 (488)
Q Consensus 388 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 466 (488)
|+.|++++|...+.+|.+++.+++|++|++++|...+.+|. ++.+++|++|++++|..+..+|..
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-------------- 296 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-------------- 296 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG--------------
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH--------------
Confidence 99999999988887999999999999999999999999987 899999999999999988888876
Q ss_pred CcccccCccccccccc
Q 038150 467 SSVIIAFPKLKSLSIE 482 (488)
Q Consensus 467 ~~~~~~~p~L~~L~l~ 482 (488)
.+.+++|+.+.+.
T Consensus 297 ---l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 297 ---IAQLPANCIILVP 309 (328)
T ss_dssp ---GGGSCTTCEEECC
T ss_pred ---HhhccCceEEeCC
Confidence 3456677766554
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=7.2e-24 Score=208.12 Aligned_cols=135 Identities=17% Similarity=0.102 Sum_probs=108.5
Q ss_pred ccccceeeEEEEecCCcCccc-cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 154 LDEKVRHLMLIFSKAASLPIS-TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
....++.+.+..+....+|.. +..+++|++|++.+| .+.. ..+..|..+++|++|++++|. +..
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~L~~n~------l~~------- 107 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEE-IDTYAFAYAHTIQKLYMGFNA------IRY------- 107 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC------CCC-------
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccc-cChhhccCCCCcCEEECCCCC------CCc-------
Confidence 346788999998888888865 578999999999997 5554 555568999999999999998 442
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCchh-hccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~ 305 (488)
..|..++++++|++|++++|. +..+|.. ++++++|++|++++|.+....|..++++++|++|++.+|.+..
T Consensus 108 -~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 108 -LPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp -CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred -CCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 234557889999999999975 6677776 4889999999999998655556678999999999998887654
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=8.4e-23 Score=212.79 Aligned_cols=301 Identities=15% Similarity=0.148 Sum_probs=178.5
Q ss_pred CCCccc--ccccceeeEEEEecC-CcCccccccccCcceecccccchhhhhhHHHHHhcC------CccceeecCCCccc
Q 038150 148 PNATNA--LDEKVRHLMLIFSKA-ASLPISTLRVKRMRTLLINDHSLLNAAILEELFREL------TSLRALDFGGSYHS 218 (488)
Q Consensus 148 ~~~t~~--~~~~vr~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l------~~Lr~L~Ls~~~~~ 218 (488)
+..... ....++++.+..+.. ..+|..+.++++|++|++++|..+.+..+|..+.++ ++|++|++++|.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-- 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-- 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc--
Confidence 444444 678899999999875 788999999999999999998525532467777776 999999999999
Q ss_pred ccccCCcccc--cccCc---------------cCchhhhhhccCcEeecCCCCCcccCchhhccccc-cceeeccCCCCC
Q 038150 219 TRLLTPEVPR--NIEKL---------------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLIN-VKHLLNRGTNSL 280 (488)
Q Consensus 219 ~~~~~~~lp~--~i~~l---------------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~-L~~L~l~~~~~~ 280 (488)
+..+|. .++++ .+| .++.+++|++|++++|. +..+|..++.+++ |++|++++|.+.
T Consensus 317 ----l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 317 ----LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp ----CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS
T ss_pred ----CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc
Confidence 555555 34333 344 45555555555555543 3355555555555 666666555533
Q ss_pred CCCCCCCCCcc--cccccCceeecCCCCCCCCcccCcccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCcee
Q 038150 281 RYMPVGIGRLT--GLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLT 356 (488)
Q Consensus 281 ~~lp~~i~~L~--~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~ 356 (488)
.+|..++.++ +|++|++.+|.+.+..+..........-.+.+|+.|.+... ..++. ..+..+++|+.|+
T Consensus 391 -~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~------~~~~~l~~L~~L~ 463 (636)
T 4eco_A 391 -YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK------ELFSTGSPLSSIN 463 (636)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT------HHHHTTCCCSEEE
T ss_pred -ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH------HHHccCCCCCEEE
Confidence 5555544433 55555555555443211111100000003445555555332 22221 2223355555555
Q ss_pred ecccCchhhhhh-------------------hccccchHHHhhhCC--CCCCCCEEEeccccCCCCCchHHHhccCCcEE
Q 038150 357 LWFDKEEEEEGE-------------------RRKNEDNQLLLEALR--PPLNLKELEIEYYRGNTVFPSWMTSLTNLKSL 415 (488)
Q Consensus 357 l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 415 (488)
+++|.+...... ...+.. ..+|..+. .+++|+.|++++|.+.. +|.+++.+++|+.|
T Consensus 464 Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L 541 (636)
T 4eco_A 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541 (636)
T ss_dssp CCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC-CBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred CCCCCCCCcCHHHhccccccccccCCccEEECcCCcC-CccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence 555554311100 001111 24555555 67777777777777777 77777777778877
Q ss_pred eec------CCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150 416 DLS------SCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 416 ~l~------~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
+++ +|...+.+|. ++.+++|++|++++|. ++.+|.. .+++|+.|+++++|
T Consensus 542 ~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-------------------~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-------------------ITPNISVLDIKDNP 598 (636)
T ss_dssp ECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-------------------CCTTCCEEECCSCT
T ss_pred ECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-------------------HhCcCCEEECcCCC
Confidence 774 4555556665 7777778888887776 4555543 24789999988875
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.5e-23 Score=217.14 Aligned_cols=134 Identities=17% Similarity=0.106 Sum_probs=101.0
Q ss_pred cccceeeEEEEecCCcCccc-cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150 155 DEKVRHLMLIFSKAASLPIS-TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL 233 (488)
Q Consensus 155 ~~~vr~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l 233 (488)
...++.+.+..+....+|.. +..+++|++|++.+| .+.. ..+..|..+++|++|+|++|. +..
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~------l~~-------- 113 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEE-IDTYAFAYAHTIQKLYMGFNA------IRY-------- 113 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC------CCC--------
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCC-CChHHhcCCCCCCEEECCCCc------CCC--------
Confidence 35667788877777777764 567889999999887 4554 555568889999999999988 432
Q ss_pred cCchhhhhhccCcEeecCCCCCcccCchh-hccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150 234 VLPETLCELYNLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~ 305 (488)
..|..++++++|++|++++|. +..+|.. ++++++|++|++++|.+....|..++++++|++|++++|.+.+
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 114 LPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 223456788888999998875 5667665 4888889999988888666556678888888888888876654
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=4.2e-24 Score=202.99 Aligned_cols=251 Identities=16% Similarity=0.081 Sum_probs=200.0
Q ss_pred cCcceecccccchhhh-hhHHHHHhcCCccceeecCC-CcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150 179 KRMRTLLINDHSLLNA-AILEELFRELTSLRALDFGG-SYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL 256 (488)
Q Consensus 179 ~~Lr~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~Ls~-~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~ 256 (488)
.++++|++.++ .+.+ ..+|..+.++++|++|++++ +.+ .+ .+|..++++++|++|++++|...
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-----~~---------~~p~~l~~l~~L~~L~Ls~n~l~ 114 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNL-----VG---------PIPPAIAKLTQLHYLYITHTNVS 114 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTE-----ES---------CCCGGGGGCTTCSEEEEEEECCE
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcc-----cc---------cCChhHhcCCCCCEEECcCCeeC
Confidence 58999999997 4432 02456689999999999995 775 55 67888999999999999998866
Q ss_pred ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCC-cccccccccccCC
Q 038150 257 KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLE-HLQVCGISRLGDV 335 (488)
Q Consensus 257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~~~~~~~~ 335 (488)
..+|..++++++|++|++++|.+...+|..++++++|++|++.+|.+.+ .....+..+. +|+.|.+....-.
T Consensus 115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-------~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-------AIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-------ECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC-------cCCHHHhhhhhcCcEEECcCCeee
Confidence 6899999999999999999999777889999999999999999987653 2234555665 7777777543211
Q ss_pred CChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEE
Q 038150 336 SDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSL 415 (488)
Q Consensus 336 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 415 (488)
...+..+..++ |+.|++++|.+. ...+..+..+++|+.|++++|.+.. .+..+..+++|++|
T Consensus 188 ----~~~~~~~~~l~-L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~l~~L~~L 249 (313)
T 1ogq_A 188 ----GKIPPTFANLN-LAFVDLSRNMLE------------GDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSKNLNGL 249 (313)
T ss_dssp ----EECCGGGGGCC-CSEEECCSSEEE------------ECCGGGCCTTSCCSEEECCSSEECC-BGGGCCCCTTCCEE
T ss_pred ----ccCChHHhCCc-ccEEECcCCccc------------CcCCHHHhcCCCCCEEECCCCceee-ecCcccccCCCCEE
Confidence 01224556666 999999999875 3456788999999999999999887 44447889999999
Q ss_pred eecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccccC
Q 038150 416 DLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLREL 487 (488)
Q Consensus 416 ~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p~L 487 (488)
++++|...+.+|. ++.+++|++|++++|.-...+|. .+.+++|+.|.+.+.|.+
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~------------------~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------------------GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC------------------STTGGGSCGGGTCSSSEE
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC------------------CccccccChHHhcCCCCc
Confidence 9999998777876 89999999999999974335543 346899999999998754
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=3e-22 Score=212.66 Aligned_cols=285 Identities=17% Similarity=0.155 Sum_probs=164.7
Q ss_pred ccccceeeEEEEecC-CcCccccccccCcceecccccchhhhhhHHHHHhcCC-------ccceeecCCCcccccccCCc
Q 038150 154 LDEKVRHLMLIFSKA-ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELT-------SLRALDFGGSYHSTRLLTPE 225 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-------~Lr~L~Ls~~~~~~~~~~~~ 225 (488)
....++.+.+..+.. ..+|..+.++++|++|++++|..+.+..+|..+.++. +|++|+|++|. +..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~------L~~ 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN------LEE 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC------CCB
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc------CCc
Confidence 667899999999874 7889999999999999999985254324666666665 99999999999 444
Q ss_pred ccccccCccCch--hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCccc-ccccCceeec
Q 038150 226 VPRNIEKLVLPE--TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTG-LRTLGEFHVS 302 (488)
Q Consensus 226 lp~~i~~l~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~-L~~L~l~~~~ 302 (488)
+ |. .++++++|++|++++|. +..+| .++++++|++|++++|.+. .+|..++++++ |++|++.+|.
T Consensus 563 i---------p~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 563 F---------PASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp C---------CCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred c---------CChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 4 44 55555566666666544 33555 5555555666666555533 55555555555 5555555554
Q ss_pred CCCCCCCC----------------------cccCccccc--CCCccccccccccc--CCCChhhhhHhhcccCCCCCcee
Q 038150 303 AGGGVDGR----------------------KACRLESLK--NLEHLQVCGISRLG--DVSDVGEAKRLELDKKKYLSSLT 356 (488)
Q Consensus 303 ~~~~~~~~----------------------~~~~~~~l~--~L~~L~~L~~~~~~--~~~~~~~~~~~~l~~l~~L~~L~ 356 (488)
+.. .+.. .+.....+. .+.+|+.|.++... .++ ...+..+++|+.|+
T Consensus 631 L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp------~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 631 LKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP------TELFATGSPISTII 703 (876)
T ss_dssp CCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC------HHHHHTTCCCSEEE
T ss_pred CCc-CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC------HHHHccCCCCCEEE
Confidence 432 1100 000001111 11244444443221 111 11223455555555
Q ss_pred ecccCchhhhhh-------------------hccccchHHHhhhCC--CCCCCCEEEeccccCCCCCchHHHhccCCcEE
Q 038150 357 LWFDKEEEEEGE-------------------RRKNEDNQLLLEALR--PPLNLKELEIEYYRGNTVFPSWMTSLTNLKSL 415 (488)
Q Consensus 357 l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 415 (488)
+++|.+...... ...+.. ..+|..+. .+++|+.|+|++|.+.. +|..++.+++|+.|
T Consensus 704 Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp CCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred CCCCcCCccChHHhccccccccccCCccEEECCCCCC-ccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 555554311100 000111 13455554 66677777777776666 66666677777777
Q ss_pred eecC------CCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150 416 DLSS------CENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 416 ~l~~------~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
+|++ |.....+|. ++.+++|+.|++++|. +..+|.. .+++|+.|+|+++|
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-------------------l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-------------------LTPQLYILDIADNP 838 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-------------------CCSSSCEEECCSCT
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh-------------------hcCCCCEEECCCCC
Confidence 7755 444555554 6667777777777665 3555433 24688888888876
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=202.90 Aligned_cols=248 Identities=21% Similarity=0.179 Sum_probs=162.4
Q ss_pred ccccceeeEEEEecCCcC-ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 154 LDEKVRHLMLIFSKAASL-PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
....++.+++..+....+ +..+.++++|++|++.+| .+.. ..|..|.++++|++|+|++|. +.
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~L~~n~------l~-------- 93 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSA-VEPGAFNNLFNLRTLGLRSNR------LK-------- 93 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC------CC--------
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCE-eChhhhhCCccCCEEECCCCc------CC--------
Confidence 345788999998888776 457888999999999997 5554 556778999999999999998 55
Q ss_pred ccCch-hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCc
Q 038150 233 LVLPE-TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK 311 (488)
Q Consensus 233 l~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~ 311 (488)
.+|. .++++++|++|++++|......|..+..+++|++|++++|.+....|..++++++|++|++.+|.+.. .
T Consensus 94 -~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~ 167 (477)
T 2id5_A 94 -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-----I 167 (477)
T ss_dssp -SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-----C
T ss_pred -ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-----c
Confidence 3333 35788899999999987555567778889999999999988655556778889999999998886654 1
Q ss_pred ccCcccccCCCccccccccccc--CCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCC
Q 038150 312 ACRLESLKNLEHLQVCGISRLG--DVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLK 389 (488)
Q Consensus 312 ~~~~~~l~~L~~L~~L~~~~~~--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 389 (488)
....+.++++|+.|.+.... .+. ...+..+++|+.|++++|... ..++.......+|+
T Consensus 168 --~~~~l~~l~~L~~L~l~~n~i~~~~------~~~~~~l~~L~~L~l~~~~~~------------~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 168 --PTEALSHLHGLIVLRLRHLNINAIR------DYSFKRLYRLKVLEISHWPYL------------DTMTPNCLYGLNLT 227 (477)
T ss_dssp --CHHHHTTCTTCCEEEEESCCCCEEC------TTCSCSCTTCCEEEEECCTTC------------CEECTTTTTTCCCS
T ss_pred --ChhHhcccCCCcEEeCCCCcCcEeC------hhhcccCcccceeeCCCCccc------------cccCcccccCcccc
Confidence 12335566666666654322 111 134556666777777665432 12223333333555
Q ss_pred EEEeccccCCCCCc-hHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 390 ELEIEYYRGNTVFP-SWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 390 ~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
.|++++|.+.. +| ..+..+++|+.|++++|......+. +..+++|+.|++++|.
T Consensus 228 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 228 SLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp EEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred EEECcCCcccc-cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 55555555554 43 3344555555555555553332222 4455555555555543
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=6.2e-22 Score=191.15 Aligned_cols=268 Identities=16% Similarity=0.169 Sum_probs=153.8
Q ss_pred cccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
.....++.+++..+....++. +..+++|++|++.+| .+.. ++ .+..+++|++|++++|. +.
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~--~~-~~~~l~~L~~L~l~~n~------i~-------- 123 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITD--IS-ALQNLTNLRELYLNEDN------IS-------- 123 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCC--CG-GGTTCTTCSEEECTTSC------CC--------
T ss_pred hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccC--ch-HHcCCCcCCEEECcCCc------cc--------
Confidence 345677888888887777765 778888888888887 4443 33 37788888888888887 44
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCC--
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGR-- 310 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~-- 310 (488)
.+|. +..+++|++|++++|.....++ .+..+++|++|++++|... .++. ++.+++|++|++.+|.+.+...-.
T Consensus 124 -~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l 198 (347)
T 4fmz_A 124 -DISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDISPLASL 198 (347)
T ss_dssp -CCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCCGGGGGC
T ss_pred -Cchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCcccccccccCC
Confidence 2333 5566667777776665444443 3666666666666666532 2222 556666666666655443310000
Q ss_pred -----------cccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh
Q 038150 311 -----------KACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL 379 (488)
Q Consensus 311 -----------~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 379 (488)
....+..+..+++|+.|.+.+..-... ..+..+++|+.|++++|.+.. +
T Consensus 199 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~-------------~- 258 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL------SPLANLSQLTWLEIGTNQISD-------------I- 258 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCC-------------C-
T ss_pred CccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC------cchhcCCCCCEEECCCCccCC-------------C-
Confidence 000001133344444444433221110 114455555555555555421 1
Q ss_pred hhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCC
Q 038150 380 EALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIES 458 (488)
Q Consensus 380 ~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 458 (488)
+.+..+++|+.|++++|.+.. +| .+..+++|+.|++++|......+. ++.+++|++|++++|+ +..++.
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~------- 328 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP------- 328 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-------
T ss_pred hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-------
Confidence 345556666666666666655 43 355666677777776665444443 5666777777776665 333321
Q ss_pred CCCCCCCCCcccccCcccccccccccc
Q 038150 459 DHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 459 ~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
.+.+|+|++|++.+++
T Consensus 329 -----------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 -----------LASLSKMDSADFANQV 344 (347)
T ss_dssp -----------GGGCTTCSEESSSCC-
T ss_pred -----------hhhhhccceeehhhhc
Confidence 4468899999988875
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1e-21 Score=189.71 Aligned_cols=272 Identities=19% Similarity=0.186 Sum_probs=170.6
Q ss_pred cccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
.....++++.+..+....++ .+..+++|++|++.+| .+.. ++. +..+++|++|++++|. +.
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n-~i~~--~~~-~~~l~~L~~L~L~~n~------i~-------- 101 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGN-QITD--ISP-LSNLVKLTNLYIGTNK------IT-------- 101 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSSC------CC--------
T ss_pred hhcccccEEEEeCCccccch-hhhhcCCccEEEccCC-cccc--chh-hhcCCcCCEEEccCCc------cc--------
Confidence 35678889999988888887 4788999999999998 5553 333 8999999999999998 44
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA 312 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 312 (488)
.+| .++.+++|++|++++|. +..+|. +..+++|++|++++|.....++ .++++++|++|++.++....
T Consensus 102 -~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~------- 169 (347)
T 4fmz_A 102 -DIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD------- 169 (347)
T ss_dssp -CCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-------
T ss_pred -Cch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-------
Confidence 333 58899999999999976 667765 8999999999999997555544 48999999999999887654
Q ss_pred cCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhh----------hccccchHHHhhhC
Q 038150 313 CRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGE----------RRKNEDNQLLLEAL 382 (488)
Q Consensus 313 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~~~~~~~~~ 382 (488)
+..+..+++|+.|.+....-... ..+..+++|+.|++++|.+...... ...+.. ..++. +
T Consensus 170 --~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l-~~~~~-~ 239 (347)
T 4fmz_A 170 --VTPIANLTDLYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI-TDLSP-L 239 (347)
T ss_dssp --CGGGGGCTTCSEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCGG-G
T ss_pred --chhhccCCCCCEEEccCCccccc------ccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc-CCCcc-h
Confidence 12255667777766654432111 1144455555555555544321000 000000 01111 4
Q ss_pred CCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCccccCCCCCCCC
Q 038150 383 RPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHG 462 (488)
Q Consensus 383 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 462 (488)
..+++|+.|++++|.+.. + ..+..+++|++|++++|.. ..++.++.+++|+.|++++|. +...+..
T Consensus 240 ~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------- 305 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQI-SDISVLNNLSQLNSLFLNNNQ-LGNEDME---------- 305 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSC-CCGGGHH----------
T ss_pred hcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCcc-CCChhhcCCCCCCEEECcCCc-CCCcChh----------
Confidence 444555555555554443 3 2344555555555555542 223334455555555555554 2222111
Q ss_pred CCCCCcccccCcccccccccccc
Q 038150 463 SSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 463 ~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
..+.+|+|++|.+++|+
T Consensus 306 ------~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 306 ------VIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ------HHHTCTTCSEEECCSSS
T ss_pred ------HhhccccCCEEEccCCc
Confidence 13457888888887765
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=6e-23 Score=207.14 Aligned_cols=277 Identities=20% Similarity=0.172 Sum_probs=201.0
Q ss_pred cccccceeeEEEEecCCcC-ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCccccccc
Q 038150 153 ALDEKVRHLMLIFSKAASL-PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIE 231 (488)
Q Consensus 153 ~~~~~vr~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~ 231 (488)
.....++.+.+..+....+ |..+.++++|++|++.+| .+.. ..+..|.++++|++|+|++|.+ ..
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~i------~~------ 118 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKL-IPLGVFTGLSNLTKLDISENKI------VI------ 118 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCS-CCTTSSTTCTTCCEEECTTSCC------CE------
T ss_pred cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCc-cCcccccCCCCCCEEECCCCcc------cc------
Confidence 4457888999988877665 667889999999999997 5554 4445578899999999999984 32
Q ss_pred CccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCc
Q 038150 232 KLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK 311 (488)
Q Consensus 232 ~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~ 311 (488)
..|..+..+++|++|++++|......|..+..+++|++|++++|.+....+..++++++|+.|++.+|.+..
T Consensus 119 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~------ 190 (477)
T 2id5_A 119 --LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA------ 190 (477)
T ss_dssp --ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE------
T ss_pred --CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE------
Confidence 345567888999999999977545556678899999999999988544333458889999999998887654
Q ss_pred ccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEE
Q 038150 312 ACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKEL 391 (488)
Q Consensus 312 ~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 391 (488)
.....+..+++|+.|.+......... +.......+|+.|++++|.+... .+..+..+++|+.|
T Consensus 191 -~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L 253 (477)
T 2id5_A 191 -IRDYSFKRLYRLKVLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTAV------------PYLAVRHLVYLRFL 253 (477)
T ss_dssp -ECTTCSCSCTTCCEEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCSC------------CHHHHTTCTTCCEE
T ss_pred -eChhhcccCcccceeeCCCCcccccc----CcccccCccccEEECcCCccccc------------CHHHhcCccccCee
Confidence 11234566777777777654433221 12223345888999998887422 12456778889999
Q ss_pred EeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCccc
Q 038150 392 EIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVI 470 (488)
Q Consensus 392 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 470 (488)
+|++|.+....+..+..+++|+.|++++|......|. +..+++|+.|++++|. ++.++... .
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~----------------~ 316 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESV----------------F 316 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGG----------------B
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhH----------------c
Confidence 9998888774455677888999999988886665555 7888999999998885 66665543 2
Q ss_pred ccCcccccccccccc
Q 038150 471 IAFPKLKSLSIEVLR 485 (488)
Q Consensus 471 ~~~p~L~~L~l~~~p 485 (488)
..+++|+.|.+.++|
T Consensus 317 ~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 317 HSVGNLETLILDSNP 331 (477)
T ss_dssp SCGGGCCEEECCSSC
T ss_pred CCCcccCEEEccCCC
Confidence 357888888887664
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=2e-22 Score=210.01 Aligned_cols=289 Identities=12% Similarity=0.114 Sum_probs=181.5
Q ss_pred CCcccccccceeeEEEEecCCc------------------Cccccc--cccCcceecccccchhhhhhHHHHHhcCCccc
Q 038150 149 NATNALDEKVRHLMLIFSKAAS------------------LPISTL--RVKRMRTLLINDHSLLNAAILEELFRELTSLR 208 (488)
Q Consensus 149 ~~t~~~~~~vr~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr 208 (488)
.........++.+++..+.... +|..++ ++++|++|++.+| .+.+ .+|..+.++++|+
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~ 276 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLT-KLPTFLKALPEMQ 276 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCS-SCCTTTTTCSSCC
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCc-cChHHHhcCCCCC
Confidence 3334556788899999888866 888888 8999999999987 4444 5777788999999
Q ss_pred eeecCCCc-ccccccCCcccccccCccCchhhhhh------ccCcEeecCCCCCcccCch--hhccccccceeeccCCCC
Q 038150 209 ALDFGGSY-HSTRLLTPEVPRNIEKLVLPETLCEL------YNLEKLDISDCFNLKELPE--GIGKLINVKHLLNRGTNS 279 (488)
Q Consensus 209 ~L~Ls~~~-~~~~~~~~~lp~~i~~l~lp~~i~~L------~~L~~L~l~~~~~~~~lp~--~l~~L~~L~~L~l~~~~~ 279 (488)
+|++++|. + .+. .+|..++.+ ++|++|++++|. +..+|. .++++++|++|++++|.+
T Consensus 277 ~L~Ls~n~~l-----~~~--------~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 277 LINVACNRGI-----SGE--------QLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp EEECTTCTTS-----CHH--------HHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCC
T ss_pred EEECcCCCCC-----ccc--------cchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcC
Confidence 99999997 4 320 255666665 888888888876 447887 788888888888888876
Q ss_pred CCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCc-ccccccccc--cCCCChhhhhHhhcccC--CCCCc
Q 038150 280 LRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEH-LQVCGISRL--GDVSDVGEAKRLELDKK--KYLSS 354 (488)
Q Consensus 280 ~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~~~~~--~~~~~~~~~~~~~l~~l--~~L~~ 354 (488)
.+.+| .++++++|++|++.+|.+.. .+.. +..+++ |+.|.+... ..++ ..+..+ ++|+.
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~~-----lp~~---l~~l~~~L~~L~Ls~N~l~~lp-------~~~~~~~l~~L~~ 406 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQITE-----IPAN---FCGFTEQVENLSFAHNKLKYIP-------NIFDAKSVSVMSA 406 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEEE-----CCTT---SEEECTTCCEEECCSSCCSSCC-------SCCCTTCSSCEEE
T ss_pred ccchh-hhCCCCCCCEEECCCCcccc-----ccHh---hhhhcccCcEEEccCCcCcccc-------hhhhhcccCccCE
Confidence 55777 78888888888887776543 2333 344444 555555332 2222 233333 36777
Q ss_pred eeecccCchhhhhhhccccchHHHhhhCC-------CCCCCCEEEeccccCCCCCchHHH-hccCCcEEeecCCCCCCCC
Q 038150 355 LTLWFDKEEEEEGERRKNEDNQLLLEALR-------PPLNLKELEIEYYRGNTVFPSWMT-SLTNLKSLDLSSCENCEQL 426 (488)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~~ 426 (488)
|++++|.+. ...|..+. .+++|+.|++++|.+.. +|..+. .+++|++|++++|... .+
T Consensus 407 L~Ls~N~l~------------~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i 472 (636)
T 4eco_A 407 IDFSYNEIG------------SVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EI 472 (636)
T ss_dssp EECCSSCTT------------TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred EECcCCcCC------------CcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-Cc
Confidence 777777664 22344444 55567777777776665 555443 4666777777666654 44
Q ss_pred CC-C-C-------CCCCcCeeeecccccceeeCcccc--CCCCCCC------CCCCCCcccccCccccccccccc
Q 038150 427 PP-L-G-------KLQSLENLHIWRMESVKRVGDEFL--GIESDHH------GSSSSSSVIIAFPKLKSLSIEVL 484 (488)
Q Consensus 427 ~~-l-~-------~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~------~~~~~~~~~~~~p~L~~L~l~~~ 484 (488)
|. . . .+++|+.|++++|. +..+|..+. ....... .-.+.....+.+++|+.|.++++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSC
T ss_pred CHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCC
Confidence 43 1 1 12266666666664 445554432 1110000 00011122456778888888553
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1e-22 Score=211.71 Aligned_cols=277 Identities=16% Similarity=0.112 Sum_probs=134.1
Q ss_pred ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150 156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL 235 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l 235 (488)
..++.+++..+....+|..+..+++|++|++.+| .+.. ..+..+..+++|++|++++|.+ .+ .+
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~~-----~~---------~~ 341 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFEN-LCQISASNFPSLTHLSIKGNTK-----RL---------EL 341 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSB-GGGGCGGGCTTCSEEECCSCSS-----CC---------BC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCc-CchhhhhccCcCCEEECCCCCc-----cc---------cc
Confidence 3444444444444444444444455555555444 2222 2333344455555555555442 22 11
Q ss_pred c-hhhhhhccCcEeecCCCCCcccC--chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150 236 P-ETLCELYNLEKLDISDCFNLKEL--PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA 312 (488)
Q Consensus 236 p-~~i~~L~~L~~L~l~~~~~~~~l--p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 312 (488)
| ..++.+++|++|++++|...... |..++.+++|++|++++|......|..++++++|++|++.+|...+.
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------ 415 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK------ 415 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC------
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc------
Confidence 1 12445555555555554422211 34455555555555555554344444555555555555555543320
Q ss_pred cCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150 313 CRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE 392 (488)
Q Consensus 313 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 392 (488)
.....+..+++|+.|.+....-.. ..+..+..+++|+.|++++|.+.+.. ...+..+..+++|+.|+
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~---------~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDI----SSEQLFDGLPALQHLNLQGNHFPKGN---------IQKTNSLQTLGRLEILV 482 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBT----TCTTTTTTCTTCCEEECTTCBCGGGE---------ECSSCGGGGCTTCCEEE
T ss_pred ccchhhhCcccCCEEECCCCccCC----cCHHHHhCCCCCCEEECCCCCCCccc---------cccchhhccCCCccEEE
Confidence 011123344455555443322110 11233455566666666666543210 01113345556666666
Q ss_pred eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccc
Q 038150 393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVII 471 (488)
Q Consensus 393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (488)
+++|.+....|..++.+++|++|++++|......|. ++.+++| .|++++|. +..++... .+
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~-l~~~~~~~----------------~~ 544 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH-ISIILPSL----------------LP 544 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC-CCCCCGGG----------------HH
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc-ccccCHhh----------------cc
Confidence 666665553455556666666666666655444443 5556666 66666554 33332221 34
Q ss_pred cCcccccccccccc
Q 038150 472 AFPKLKSLSIEVLR 485 (488)
Q Consensus 472 ~~p~L~~L~l~~~p 485 (488)
.+++|+.|++.++|
T Consensus 545 ~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 545 ILSQQRTINLRQNP 558 (606)
T ss_dssp HHHTSSEEECTTCC
T ss_pred cCCCCCEEeCCCCC
Confidence 67899999998876
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=4.2e-22 Score=191.07 Aligned_cols=263 Identities=16% Similarity=0.140 Sum_probs=157.7
Q ss_pred ccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150 156 EKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV 234 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~ 234 (488)
..++.++++.+....++ ..+.++++|++|++.+| .+.. ..+..|.++++|++|++++|. +..+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~------l~~l-------- 117 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISK-IHEKAFSPLRKLQKLYISKNH------LVEI-------- 117 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCE-ECGGGSTTCTTCCEEECCSSC------CCSC--------
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCc-cCHhHhhCcCCCCEEECCCCc------CCcc--------
Confidence 45666777666665553 35666777777777776 4443 445556777777777777776 4433
Q ss_pred CchhhhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCC--CCCCCCCCCcccccccCceeecCCCCCCCCc
Q 038150 235 LPETLCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSL--RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK 311 (488)
Q Consensus 235 lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~--~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~ 311 (488)
|..+. ++|++|++++|. +..+|. .++.+++|++|++++|... ...|..++.+ +|++|++.+|.+.. .
T Consensus 118 -~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-----l 187 (332)
T 2ft3_A 118 -PPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-----I 187 (332)
T ss_dssp -CSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-----C
T ss_pred -Ccccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-----c
Confidence 33332 567777777755 444443 4677777777777777643 2345556666 77777777766554 2
Q ss_pred ccCcccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCC
Q 038150 312 ACRLESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLK 389 (488)
Q Consensus 312 ~~~~~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 389 (488)
+..+. ++|+.|.+... ..+. +..+..+++|+.|++++|.+... .+..+..+++|+
T Consensus 188 ~~~~~-----~~L~~L~l~~n~i~~~~------~~~l~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~ 244 (332)
T 2ft3_A 188 PKDLP-----ETLNELHLDHNKIQAIE------LEDLLRYSKLYRLGLGHNQIRMI------------ENGSLSFLPTLR 244 (332)
T ss_dssp CSSSC-----SSCSCCBCCSSCCCCCC------TTSSTTCTTCSCCBCCSSCCCCC------------CTTGGGGCTTCC
T ss_pred Ccccc-----CCCCEEECCCCcCCccC------HHHhcCCCCCCEEECCCCcCCcC------------ChhHhhCCCCCC
Confidence 22211 45555555432 2221 24566777888888888776422 234566777888
Q ss_pred EEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCC------CCCcCeeeecccccce--eeCccccCCCCCC
Q 038150 390 ELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGK------LQSLENLHIWRMESVK--RVGDEFLGIESDH 460 (488)
Q Consensus 390 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~------l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~ 460 (488)
.|++++|.+.. +|.++..+++|++|++++|......+. +.. .++|+.|++.+|+ +. .++...
T Consensus 245 ~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~------- 315 (332)
T 2ft3_A 245 ELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPAT------- 315 (332)
T ss_dssp EEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGG-------
T ss_pred EEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc-ccccccCccc-------
Confidence 88888887776 777777888888888888775433222 222 4667888887776 22 121111
Q ss_pred CCCCCCCcccccCcccccccccccc
Q 038150 461 HGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 461 ~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
...+++|+.|.+.++.
T Consensus 316 ---------~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 ---------FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---------GTTBCCSTTEEC----
T ss_pred ---------ccccchhhhhhccccc
Confidence 3357788888887764
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=6.9e-22 Score=189.40 Aligned_cols=243 Identities=14% Similarity=0.073 Sum_probs=124.4
Q ss_pred ccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150 156 EKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV 234 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~ 234 (488)
..++.+++..+....++. .+.++++|++|++.+| .+.. ..|..|..+++|++|++++|. +..+|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~------l~~l~------- 116 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISK-ISPGAFAPLVKLERLYLSKNQ------LKELP------- 116 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCC-BCTTTTTTCTTCCEEECCSSC------CSBCC-------
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCe-eCHHHhcCCCCCCEEECCCCc------CCccC-------
Confidence 455566666655555543 4556666666666665 3333 334455666666666666665 33222
Q ss_pred CchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC--CCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150 235 LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR--YMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA 312 (488)
Q Consensus 235 lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 312 (488)
..+. ++|++|++++|......+..+.++++|++|++++|.... ..+..++++++|++|++.+|.+.. .+
T Consensus 117 --~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----l~ 187 (330)
T 1xku_A 117 --EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-----IP 187 (330)
T ss_dssp --SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-----CC
T ss_pred --hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-----CC
Confidence 2222 456666666654322233345666666666666665321 334455666666666666555443 12
Q ss_pred cCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150 313 CRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE 392 (488)
Q Consensus 313 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 392 (488)
..+ .++|+.|.+....- . ...+..+..+++|+.|++++|.+... .+..+..+++|+.|+
T Consensus 188 ~~~-----~~~L~~L~l~~n~l-~---~~~~~~~~~l~~L~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 188 QGL-----PPSLTELHLDGNKI-T---KVDAASLKGLNNLAKLGLSFNSISAV------------DNGSLANTPHLRELH 246 (330)
T ss_dssp SSC-----CTTCSEEECTTSCC-C---EECTGGGTTCTTCCEEECCSSCCCEE------------CTTTGGGSTTCCEEE
T ss_pred ccc-----cccCCEEECCCCcC-C---ccCHHHhcCCCCCCEEECCCCcCcee------------ChhhccCCCCCCEEE
Confidence 111 13444444432211 0 01123455566666666666655321 123445556666666
Q ss_pred eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CC------CCCCcCeeeecccc
Q 038150 393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LG------KLQSLENLHIWRME 444 (488)
Q Consensus 393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~------~l~~L~~L~l~~~~ 444 (488)
+++|.+.. +|.++..+++|++|++++|......+. +. ..+.|+.|++.+++
T Consensus 247 L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 247 LNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 66666654 666666666666666666654332211 21 23556666666655
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=4.2e-22 Score=207.14 Aligned_cols=254 Identities=13% Similarity=0.041 Sum_probs=168.4
Q ss_pred ccccceeeEEEEecCCcC-ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 154 LDEKVRHLMLIFSKAASL-PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
....++++++..+....+ |..+.++++|++|++++| .+.. ..|..|.++++|++|+|++|.+ ..
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~-~~~~~~~~l~~L~~L~Ls~n~l-----~~-------- 95 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYW-IHEDTFQSQHRLDTLVLTANPL-----IF-------- 95 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCE-ECTTTTTTCTTCCEEECTTCCC-----SE--------
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccce-eChhhccCccccCeeeCCCCcc-----cc--------
Confidence 345788898888888766 557888999999999987 5554 5667788999999999999984 33
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccC-chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCc
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKEL-PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK 311 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~ 311 (488)
..|..++++++|++|++++|. +..+ |..++++++|++|++++|.+...-+..+..+++|++|++.+|.+...
T Consensus 96 -~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----- 168 (606)
T 3t6q_A 96 -MAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL----- 168 (606)
T ss_dssp -ECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE-----
T ss_pred -cChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc-----
Confidence 335567777788888888765 4443 55677777888888877774432223334477777777777655431
Q ss_pred ccCcccccCCCccc--ccccccc--cCCC---------------------------------------------------
Q 038150 312 ACRLESLKNLEHLQ--VCGISRL--GDVS--------------------------------------------------- 336 (488)
Q Consensus 312 ~~~~~~l~~L~~L~--~L~~~~~--~~~~--------------------------------------------------- 336 (488)
....+..+++|+ .+.+... .++.
T Consensus 169 --~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 169 --SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp --CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred --ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChh
Confidence 011122222222 1111110 0000
Q ss_pred ------------------ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC
Q 038150 337 ------------------DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG 398 (488)
Q Consensus 337 ------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 398 (488)
.........+..+++|+.|++++|.+ ..+|..+..+++|++|++++|.+
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------------~~lp~~l~~l~~L~~L~l~~n~l 313 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-------------SELPSGLVGLSTLKKLVLSANKF 313 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-------------SCCCSSCCSCTTCCEEECTTCCC
T ss_pred HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-------------CCCChhhcccccCCEEECccCCc
Confidence 00000112356677888888888876 34567788888899999988888
Q ss_pred CCCCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccc
Q 038150 399 NTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRME 444 (488)
Q Consensus 399 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~ 444 (488)
....|..+..+++|++|++++|.....++. ++.+++|++|++++|.
T Consensus 314 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 774566788888888888888877666654 7788888888888776
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=5.7e-22 Score=198.74 Aligned_cols=147 Identities=16% Similarity=0.060 Sum_probs=110.3
Q ss_pred eEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhh
Q 038150 161 LMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC 240 (488)
Q Consensus 161 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~ 240 (488)
+.........+|. + .++|++|++++| .+.. ..+..|.++++|++|++++|.+ .+.+ .|..++
T Consensus 15 ~~c~~~~l~~lp~-l--~~~l~~L~Ls~n-~i~~-~~~~~~~~l~~L~~L~L~~n~~-----~~~i--------~~~~~~ 76 (455)
T 3v47_A 15 AICINRGLHQVPE-L--PAHVNYVDLSLN-SIAE-LNETSFSRLQDLQFLKVEQQTP-----GLVI--------RNNTFR 76 (455)
T ss_dssp EECCSSCCSSCCC-C--CTTCCEEECCSS-CCCE-ECTTTTSSCTTCCEEECCCCST-----TCEE--------CTTTTT
T ss_pred cCcCCCCcccCCC-C--CCccCEEEecCC-ccCc-CChhHhccCccccEEECcCCcc-----cceE--------Cccccc
Confidence 3334444566775 2 389999999998 5655 5577799999999999999984 3322 245688
Q ss_pred hhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCC--CCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150 241 ELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVG--IGRLTGLRTLGEFHVSAGGGVDGRKACRLESL 318 (488)
Q Consensus 241 ~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l 318 (488)
++++|++|++++|......|..++++++|++|++++|.+....|.. ++++++|++|++.+|.+.+.. +. ..+
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~--~~~ 150 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ----PA--SFF 150 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC----CC--GGG
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC----cc--ccc
Confidence 9999999999998755556889999999999999999865545544 899999999999999876521 11 125
Q ss_pred cCCCccccccccc
Q 038150 319 KNLEHLQVCGISR 331 (488)
Q Consensus 319 ~~L~~L~~L~~~~ 331 (488)
.++++|+.|++..
T Consensus 151 ~~l~~L~~L~L~~ 163 (455)
T 3v47_A 151 LNMRRFHVLDLTF 163 (455)
T ss_dssp GGCTTCCEEECTT
T ss_pred CCCCcccEEeCCC
Confidence 5667777766643
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.7e-21 Score=206.85 Aligned_cols=292 Identities=13% Similarity=0.116 Sum_probs=190.3
Q ss_pred CCcccccccceeeEEEEecCCc------------------Cccccc--cccCcceecccccchhhhhhHHHHHhcCCccc
Q 038150 149 NATNALDEKVRHLMLIFSKAAS------------------LPISTL--RVKRMRTLLINDHSLLNAAILEELFRELTSLR 208 (488)
Q Consensus 149 ~~t~~~~~~vr~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr 208 (488)
.........++.++++.+.... +|..++ ++++|++|++.+|. +.+ .+|..|.++++|+
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-l~~-~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-NMT-QLPDFLYDLPELQ 518 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-TCC-SCCGGGGGCSSCC
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-CCc-cChHHHhCCCCCC
Confidence 3334556788899999888866 888877 89999999999884 333 5677789999999
Q ss_pred eeecCCCc-ccccccCCcccccccCccCchhhhhhc-------cCcEeecCCCCCcccCch--hhccccccceeeccCCC
Q 038150 209 ALDFGGSY-HSTRLLTPEVPRNIEKLVLPETLCELY-------NLEKLDISDCFNLKELPE--GIGKLINVKHLLNRGTN 278 (488)
Q Consensus 209 ~L~Ls~~~-~~~~~~~~~lp~~i~~l~lp~~i~~L~-------~L~~L~l~~~~~~~~lp~--~l~~L~~L~~L~l~~~~ 278 (488)
+|+|++|. + .+. .+|..++++. +|++|++++|. +..+|. .++++++|++|++++|.
T Consensus 519 ~L~Ls~N~~l-----sg~--------~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 519 SLNIACNRGI-----SAA--------QLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp EEECTTCTTS-----CHH--------HHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred EEECcCCCCc-----ccc--------cchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC
Confidence 99999997 4 320 2566666666 99999999977 558998 89999999999999998
Q ss_pred CCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCc-ccccccccc--cCCCChhhhhHhhcccC--CCCC
Q 038150 279 SLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEH-LQVCGISRL--GDVSDVGEAKRLELDKK--KYLS 353 (488)
Q Consensus 279 ~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~~~~~--~~~~~~~~~~~~~l~~l--~~L~ 353 (488)
+. .+| .++++++|++|++.+|.+.. .+.. +.++++ |+.|.+... ..++ ..+..+ ++|+
T Consensus 585 l~-~lp-~~~~L~~L~~L~Ls~N~l~~-----lp~~---l~~l~~~L~~L~Ls~N~L~~lp-------~~~~~~~~~~L~ 647 (876)
T 4ecn_A 585 VR-HLE-AFGTNVKLTDLKLDYNQIEE-----IPED---FCAFTDQVEGLGFSHNKLKYIP-------NIFNAKSVYVMG 647 (876)
T ss_dssp CC-BCC-CCCTTSEESEEECCSSCCSC-----CCTT---SCEECTTCCEEECCSSCCCSCC-------SCCCTTCSSCEE
T ss_pred cc-cch-hhcCCCcceEEECcCCcccc-----chHH---HhhccccCCEEECcCCCCCcCc-------hhhhccccCCCC
Confidence 55 888 89999999999999887763 3433 445555 666666443 2222 333443 3488
Q ss_pred ceeecccCchhhhhhhccccchHHHhhhCC--CCCCCCEEEeccccCCCCCchHHH-hccCCcEEeecCCCCCCCCCC-C
Q 038150 354 SLTLWFDKEEEEEGERRKNEDNQLLLEALR--PPLNLKELEIEYYRGNTVFPSWMT-SLTNLKSLDLSSCENCEQLPP-L 429 (488)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~-l 429 (488)
.|++++|.+.+..+ .++..+. .+++|+.|++++|.+.. +|.++. .+++|+.|++++|... .+|. +
T Consensus 648 ~L~Ls~N~l~g~ip---------~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 648 SVDFSYNKIGSEGR---------NISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp EEECCSSCTTTTSS---------SCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred EEECcCCcCCCccc---------cchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 88888887753311 1111222 23467777777776665 666554 5667777777766544 4443 2
Q ss_pred C--------CCCCcCeeeecccccceeeCcccc--CCCCCCC------CCCCCCcccccCcccccccccccc
Q 038150 430 G--------KLQSLENLHIWRMESVKRVGDEFL--GIESDHH------GSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 430 ~--------~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~------~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
. ++++|+.|+|++|. +..+|..+. ....... .-.+.....+.+++|+.|.+++++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred hccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 1 22367777776664 445554432 1110000 000111224567788888887644
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=208.57 Aligned_cols=266 Identities=19% Similarity=0.172 Sum_probs=168.7
Q ss_pred ccccceeeEEEEecCCcC-ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 154 LDEKVRHLMLIFSKAASL-PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
....+++++++.+....+ +..+.++++|++|++++|..... ..|..|.++++|++|+|++|.+ ..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l-----~~-------- 87 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKI-----YF-------- 87 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCC-----CE--------
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcC-----cc--------
Confidence 567889999999888665 56788999999999999844433 3466789999999999999984 33
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCchh--hccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCC
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELPEG--IGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDG 309 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~--l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~ 309 (488)
..|..++++++|++|++++|.....+|.. ++++++|++|++++|.+....| ..++++++|++|++.+|.+.+..
T Consensus 88 -~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-- 164 (844)
T 3j0a_A 88 -LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-- 164 (844)
T ss_dssp -ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC--
T ss_pred -cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC--
Confidence 33566677777777777777644445554 6777777777777777544333 35777777777777776654321
Q ss_pred CcccCcccc-----------------------cCCC------cccccccccccCCCChhhhh------------------
Q 038150 310 RKACRLESL-----------------------KNLE------HLQVCGISRLGDVSDVGEAK------------------ 342 (488)
Q Consensus 310 ~~~~~~~~l-----------------------~~L~------~L~~L~~~~~~~~~~~~~~~------------------ 342 (488)
+..+..+ ..+. .|+.|.++...-.......+
T Consensus 165 --~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 165 --EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp --SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred --HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 1111111 1111 14444443221000000000
Q ss_pred --------------Hhhccc--CCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHH
Q 038150 343 --------------RLELDK--KKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWM 406 (488)
Q Consensus 343 --------------~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~ 406 (488)
...+.. .++|+.|++++|.+. ...+..+..+++|+.|++++|.+....|..+
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF------------SLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC------------EECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCccc------------ccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 011111 245666777666653 2234556777888888888887776456677
Q ss_pred HhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCc
Q 038150 407 TSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGD 451 (488)
Q Consensus 407 ~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~ 451 (488)
..+++|++|++++|......+. ++.+++|++|++++|. +..++.
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~ 355 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQD 355 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCS
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccCh
Confidence 7788888888888876555454 7778888888887775 555543
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=3.3e-21 Score=184.78 Aligned_cols=268 Identities=17% Similarity=0.156 Sum_probs=202.9
Q ss_pred cceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCc
Q 038150 157 KVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLP 236 (488)
Q Consensus 157 ~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp 236 (488)
.++.+.+..+....+|..+ .+++++|++.+| .+.. ..+..|.++++|++|++++|.+ .. ..|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~-~~~~~~~~l~~L~~L~L~~n~l------~~--------~~~ 95 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNN-DISE-LRKDDFKGLQHLYALVLVNNKI------SK--------IHE 95 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSS-CCCE-ECTTTTTTCTTCCEEECCSSCC------CE--------ECG
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCC-cCCc-cCHhHhhCCCCCcEEECCCCcc------Cc--------cCH
Confidence 5677888877778888765 479999999998 5554 5566789999999999999984 42 346
Q ss_pred hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCc
Q 038150 237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRL 315 (488)
Q Consensus 237 ~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 315 (488)
..++++++|++|++++|. +..+|..+. ++|++|++++|.+. .+| ..++++++|++|++.+|.... .....
T Consensus 96 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~ 166 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLEN-----SGFEP 166 (332)
T ss_dssp GGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBG-----GGSCT
T ss_pred hHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCcccc-----CCCCc
Confidence 788899999999999975 678887776 89999999999854 455 458999999999999887643 11223
Q ss_pred ccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEe
Q 038150 316 ESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEI 393 (488)
Q Consensus 316 ~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 393 (488)
..+..+ +|+.|.+... ..++. .+ .++|+.|++++|.+.. ..+..+..+++|+.|++
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~~-------~~--~~~L~~L~l~~n~i~~------------~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIPK-------DL--PETLNELHLDHNKIQA------------IELEDLLRYSKLYRLGL 224 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCCS-------SS--CSSCSCCBCCSSCCCC------------CCTTSSTTCTTCSCCBC
T ss_pred ccccCC-ccCEEECcCCCCCccCc-------cc--cCCCCEEECCCCcCCc------------cCHHHhcCCCCCCEEEC
Confidence 344444 6777766443 33332 12 2789999999998752 23467888999999999
Q ss_pred ccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCccccc
Q 038150 394 EYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIA 472 (488)
Q Consensus 394 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (488)
++|.+....|.++..+++|++|++++|... .+|. ++.+++|++|++++|. ++.++...+... .....
T Consensus 225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~----------~~~~~ 292 (332)
T 2ft3_A 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV----------GFGVK 292 (332)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS----------SCCSS
T ss_pred CCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChhHcccc----------ccccc
Confidence 999998855668999999999999999865 6776 8899999999999987 777776544321 00123
Q ss_pred Ccccccccccccc
Q 038150 473 FPKLKSLSIEVLR 485 (488)
Q Consensus 473 ~p~L~~L~l~~~p 485 (488)
+++|+.|.+.++|
T Consensus 293 ~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 293 RAYYNGISLFNNP 305 (332)
T ss_dssp SCCBSEEECCSSS
T ss_pred cccccceEeecCc
Confidence 6777777777665
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=9.5e-22 Score=200.59 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=72.9
Q ss_pred ccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCccccc-ccCc
Q 038150 156 EKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRN-IEKL 233 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~-i~~l 233 (488)
..+++++++.+....++ ..+..+++|++|++++| .+.. ..|..|.++++|++|+|++|. +..+|.. +.+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~Ls~N~------l~~lp~~~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQY-LDISVFKFNQELEYLDLSHNK------LVKISCHPTVNL 92 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCE-EEGGGGTTCTTCCEEECCSSC------CCEEECCCCCCC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCC-cChHHhhcccCCCEEecCCCc------eeecCccccCCc
Confidence 67888888888887665 46788888999999887 5554 556678888889999998888 5555542 1111
Q ss_pred -------------cCchhhhhhccCcEeecCCCCCcccCchhhcccccc--ceeeccCCCC
Q 038150 234 -------------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINV--KHLLNRGTNS 279 (488)
Q Consensus 234 -------------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L--~~L~l~~~~~ 279 (488)
.+|..++++++|++|++++|.. .. ..+..+++| ++|++++|..
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG--GGGGGGTTSCEEEEEEEECTT
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCccc-ch--hhccccccceeeEEEeecccc
Confidence 2455666666666666666542 21 234444444 5555555443
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=3.9e-21 Score=184.13 Aligned_cols=249 Identities=16% Similarity=0.180 Sum_probs=193.5
Q ss_pred cceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCc
Q 038150 157 KVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLP 236 (488)
Q Consensus 157 ~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp 236 (488)
.++.+.+..+....+|..+ .+++++|++++| .+.. ..+..|.++++|++|++++|.+ .. ..|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~L~~n~l------~~--------~~~ 93 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNN-KITE-IKDGDFKNLKNLHTLILINNKI------SK--------ISP 93 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSS-CCCC-BCTTTTTTCTTCCEEECCSSCC------CC--------BCT
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCC-cCCE-eChhhhccCCCCCEEECCCCcC------Ce--------eCH
Confidence 5566766666667777654 379999999998 5654 5555689999999999999984 32 346
Q ss_pred hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcc
Q 038150 237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLE 316 (488)
Q Consensus 237 ~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 316 (488)
..++.+++|++|++++|. +..+|..+. ++|++|++++|.+....+..++++++|++|++.+|.... ......
T Consensus 94 ~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~ 165 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENG 165 (330)
T ss_dssp TTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTT
T ss_pred HHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-----cCcChh
Confidence 788899999999999976 778887765 799999999998554444558999999999999887653 123345
Q ss_pred cccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEec
Q 038150 317 SLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIE 394 (488)
Q Consensus 317 ~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 394 (488)
.+.++++|+.|.+... ..++. .+ .++|+.|++++|.+.. ..+..+..+++|+.|+++
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~l~~-------~~--~~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITTIPQ-------GL--PPSLTELHLDGNKITK------------VDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCS-------SC--CTTCSEEECTTSCCCE------------ECTGGGTTCTTCCEEECC
T ss_pred hccCCCCcCEEECCCCccccCCc-------cc--cccCCEEECCCCcCCc------------cCHHHhcCCCCCCEEECC
Confidence 5677888888777543 33331 11 2789999999998752 235678899999999999
Q ss_pred cccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCcccc
Q 038150 395 YYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFL 454 (488)
Q Consensus 395 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~ 454 (488)
+|.+....+.++..+++|++|++++|... .+|. +..+++|++|++++|. ++.++...+
T Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f 283 (330)
T 1xku_A 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN-ISAIGSNDF 283 (330)
T ss_dssp SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC-CCCCCTTSS
T ss_pred CCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc-CCccChhhc
Confidence 99998845668899999999999999865 6665 8999999999999987 777776544
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=1.3e-20 Score=189.38 Aligned_cols=242 Identities=19% Similarity=0.247 Sum_probs=121.0
Q ss_pred ccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150 154 LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL 233 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l 233 (488)
....++.+++..+....++. +..+++|++|++.+| .+.. ..+ +.++++|++|++++|. +..+|. +.++
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~-~~~--~~~l~~L~~L~L~~n~------l~~~~~-~~~l 133 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIAD-ITP--LANLTNLTGLTLFNNQ------ITDIDP-LKNL 133 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCC-CGG--GTTCTTCCEEECCSSC------CCCCGG-GTTC
T ss_pred hhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-cccc-Chh--hcCCCCCCEEECCCCC------CCCChH-HcCC
Confidence 34566677777666666654 666677777777665 3332 222 5666666666666666 333321 1111
Q ss_pred --------------cCc--------------------hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCC
Q 038150 234 --------------VLP--------------------ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNS 279 (488)
Q Consensus 234 --------------~lp--------------------~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~ 279 (488)
.+| ..++++++|++|++++|. +..++ .+..+++|++|++++|..
T Consensus 134 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQI 211 (466)
T ss_dssp TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCC
T ss_pred CCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCcc
Confidence 111 124455555555665544 33333 355556666666665553
Q ss_pred CCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecc
Q 038150 280 LRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWF 359 (488)
Q Consensus 280 ~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 359 (488)
....| ++.+++|++|++.+|...+ +..+..+++|+.|.+....-... ..+..+++|+.|++++
T Consensus 212 ~~~~~--~~~l~~L~~L~l~~n~l~~---------~~~l~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 212 SDITP--LGILTNLDELSLNGNQLKD---------IGTLASLTNLTDLDLANNQISNL------APLSGLTKLTELKLGA 274 (466)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCS
T ss_pred ccccc--ccccCCCCEEECCCCCccc---------chhhhcCCCCCEEECCCCccccc------hhhhcCCCCCEEECCC
Confidence 32222 4455556666555554432 12344455555555543321111 1144555666666666
Q ss_pred cCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeee
Q 038150 360 DKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLH 439 (488)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 439 (488)
|.+... +. +..+++|+.|++++|.+.. ++. ++.+++|+.|++++|...... .++.+++|+.|+
T Consensus 275 n~l~~~-------------~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 337 (466)
T 1o6v_A 275 NQISNI-------------SP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLF 337 (466)
T ss_dssp SCCCCC-------------GG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEE
T ss_pred CccCcc-------------cc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCch-hhccCccCCEeE
Confidence 654321 11 4445555555555555554 333 445555555555555433322 244455555555
Q ss_pred eccc
Q 038150 440 IWRM 443 (488)
Q Consensus 440 l~~~ 443 (488)
+++|
T Consensus 338 l~~n 341 (466)
T 1o6v_A 338 FYNN 341 (466)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5554
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=199.98 Aligned_cols=126 Identities=17% Similarity=0.063 Sum_probs=101.9
Q ss_pred eeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchh
Q 038150 159 RHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPET 238 (488)
Q Consensus 159 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~ 238 (488)
+.++++.+....+|..+. ++|++|++++| .+.. ..+..|.++++|++|+|++|.+ .. ..|..
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n-~i~~-~~~~~~~~l~~L~~L~Ls~n~l------~~--------~~~~~ 64 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQN-YISE-LWTSDILSLSKLRILIISHNRI------QY--------LDISV 64 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSS-CCCC-CCHHHHTTCTTCCEEECCSSCC------CE--------EEGGG
T ss_pred ceEecCCCCccccccccc--ccccEEECCCC-cccc-cChhhccccccccEEecCCCcc------CC--------cChHH
Confidence 456777777788887665 89999999998 5655 6667899999999999999994 42 33677
Q ss_pred hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecCCC
Q 038150 239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~ 305 (488)
++++++|++|++++|. +..+|.. .+++|++|++++|.+.. .+|..++++++|++|++.+|.+.+
T Consensus 65 ~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 65 FKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp GTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred hhcccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 8889999999999975 6678876 88999999999998654 467788999999999998887653
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=2.7e-21 Score=201.05 Aligned_cols=136 Identities=18% Similarity=0.139 Sum_probs=101.7
Q ss_pred ccccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 154 LDEKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
....++++++..+....++. .+.++++|++|++++| .+.. ..|..|.++++|++|+|++|.+ ..
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~-i~~~~~~~l~~L~~L~Ls~n~l-----~~-------- 94 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIET-IEDKAWHGLHHLSNLILTGNPI-----QS-------- 94 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCE-ECTTTTTTCTTCCEEECTTCCC-----CC--------
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccc-cCHHHhhchhhcCEeECCCCcc-----cc--------
Confidence 34678888888888766654 6788999999999987 5554 5566788899999999999984 32
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecCCC
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~ 305 (488)
..|..++++++|++|++++|......|..++++++|++|++++|.+.. .+|..++++++|++|++.+|.+.+
T Consensus 95 -~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 95 -FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp -CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred -cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 235677788888888888876333333667888888888888887543 567778888888888888776554
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=4.2e-21 Score=202.36 Aligned_cols=134 Identities=17% Similarity=0.133 Sum_probs=111.1
Q ss_pred ccccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 154 LDEKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
....++++++..+....++. .+.++++|++|++++| .+.. ..|..|.++++|++|+|++|. +.
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n~------l~-------- 86 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISK-LEPELCQKLPMLKVLNLQHNE------LS-------- 86 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCC-CCTTHHHHCTTCCEEECCSSC------CC--------
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCc-cCHHHHhcccCcCEEECCCCc------cC--------
Confidence 34689999999998877765 5889999999999997 5555 667789999999999999998 55
Q ss_pred ccCch-hhhhhccCcEeecCCCCCcccCc-hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150 233 LVLPE-TLCELYNLEKLDISDCFNLKELP-EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 233 l~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~ 305 (488)
.+|. .++++++|++|++++|. +..+| ..++++++|++|++++|.+....|..++++++|++|++.+|.+.+
T Consensus 87 -~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 87 -QLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp -CCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred -ccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 4444 58889999999999986 45554 678999999999999998766667778999999999998887654
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.1e-20 Score=188.55 Aligned_cols=232 Identities=14% Similarity=0.113 Sum_probs=109.4
Q ss_pred cccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150 155 DEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV 234 (488)
Q Consensus 155 ~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~ 234 (488)
...++.++++.+....+| .+..+++|++|++++| .+.. ++ +..+++|++|++++|. +. .
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~--~~--~~~l~~L~~L~Ls~N~------l~---------~ 99 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITT--LD--LSQNTNLTYLACDSNK------LT---------N 99 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSC--CC--CTTCTTCSEEECCSSC------CS---------C
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCe--Ec--cccCCCCCEEECcCCC------Cc---------e
Confidence 345555555555555554 4555566666666655 3332 22 4555566666666655 22 1
Q ss_pred CchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCC---------------------CCCCCCCCCCCcccc
Q 038150 235 LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTN---------------------SLRYMPVGIGRLTGL 293 (488)
Q Consensus 235 lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~---------------------~~~~lp~~i~~L~~L 293 (488)
+| ++.+++|++|++++|. +..+| ++.+++|++|++++|. ....+ .++.+++|
T Consensus 100 ~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 100 LD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp CC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred ee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence 21 3444455555555543 33333 4444555555555444 23322 24444445
Q ss_pred cccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhcccc
Q 038150 294 RTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNE 373 (488)
Q Consensus 294 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 373 (488)
++|++.+|.+.+ .+ +..+++|+.|.+....- .. ..+..+++|+.|++++|.+.+
T Consensus 173 ~~L~ls~n~l~~-----l~-----l~~l~~L~~L~l~~N~l-~~------~~l~~l~~L~~L~Ls~N~l~~--------- 226 (457)
T 3bz5_A 173 TTLDCSFNKITE-----LD-----VSQNKLLNRLNCDTNNI-TK------LDLNQNIQLTFLDCSSNKLTE--------- 226 (457)
T ss_dssp CEEECCSSCCCC-----CC-----CTTCTTCCEEECCSSCC-SC------CCCTTCTTCSEEECCSSCCSC---------
T ss_pred CEEECCCCccce-----ec-----cccCCCCCEEECcCCcC-Ce------eccccCCCCCEEECcCCcccc---------
Confidence 555444444332 11 33344444444432211 10 024455566666666665531
Q ss_pred chHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCc----------EEeecCCCCCCCCCCCCCCCCcCeeeeccc
Q 038150 374 DNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLK----------SLDLSSCENCEQLPPLGKLQSLENLHIWRM 443 (488)
Q Consensus 374 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~----------~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~ 443 (488)
+| +..+++|+.|++++|.+.. +| ++.+++|+ .|++++|...+.+| .+.+++|+.|++++|
T Consensus 227 ----ip--~~~l~~L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 227 ----ID--VTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHN 296 (457)
T ss_dssp ----CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTC
T ss_pred ----cC--ccccCCCCEEEeeCCcCCC-cC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCC
Confidence 22 4555666666666666555 33 12333333 33333333333333 345566666666666
Q ss_pred ccceeeC
Q 038150 444 ESVKRVG 450 (488)
Q Consensus 444 ~~l~~~~ 450 (488)
..++.+|
T Consensus 297 ~~l~~l~ 303 (457)
T 3bz5_A 297 TQLYLLD 303 (457)
T ss_dssp TTCCEEE
T ss_pred cccceec
Confidence 6555554
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=1.4e-21 Score=203.19 Aligned_cols=269 Identities=16% Similarity=0.053 Sum_probs=193.5
Q ss_pred cccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150 155 DEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV 234 (488)
Q Consensus 155 ~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~ 234 (488)
...++.+.+..+....+| .+..+++|++|++.+| .+. .+|. + .+++|++|++++|.. ..
T Consensus 284 l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n-~l~--~lp~-~-~l~~L~~L~l~~n~~-----~~---------- 342 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC-QLK--QFPT-L-DLPFLKSLTLTMNKG-----SI---------- 342 (606)
T ss_dssp GTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESC-CCS--SCCC-C-CCSSCCEEEEESCSS-----CE----------
T ss_pred CCCCCEEEecCccchhhh-hccccccCCEEEcccc-cCc--cccc-C-CCCccceeeccCCcC-----cc----------
Confidence 456667777777777676 6667777888888776 333 4553 3 777788888877753 22
Q ss_pred CchhhhhhccCcEeecCCCCCccc--CchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150 235 LPETLCELYNLEKLDISDCFNLKE--LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA 312 (488)
Q Consensus 235 lp~~i~~L~~L~~L~l~~~~~~~~--lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 312 (488)
+..++.+++|++|++++|..... .|..++.+++|++|++++|. ...+|..++.+++|++|++.+|...+ .
T Consensus 343 -~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~------~ 414 (606)
T 3vq2_A 343 -SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKR------V 414 (606)
T ss_dssp -ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEES------T
T ss_pred -chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCC------c
Confidence 12455788899999988753322 37788888999999998887 45577778888999999888887654 1
Q ss_pred cCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150 313 CRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE 392 (488)
Q Consensus 313 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 392 (488)
.....+..+++|+.|.++...-.. ..+..+..+++|+.|++++|.+.+ ..+|..+..+++|+.|+
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKI----DFDGIFLGLTSLNTLKMAGNSFKD-----------NTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEE----CCTTTTTTCTTCCEEECTTCEEGG-----------GEECSCCTTCTTCCEEE
T ss_pred cChhhhhccccCCEEECcCCCCCc----cchhhhcCCCCCCEEECCCCcCCC-----------cchHHhhccCCCCCEEE
Confidence 112345667778877776543211 123457778899999999887742 12467788889999999
Q ss_pred eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccc
Q 038150 393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVII 471 (488)
Q Consensus 393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (488)
+++|.+....|.+++.+++|++|++++|......|. ++.+++|++|++++|. ++.+|.. ..
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~-----------------~~ 541 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI-----------------LQ 541 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESC-----------------GG
T ss_pred CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHh-----------------Hh
Confidence 999988875677888899999999999987776565 8888999999998887 6677665 23
Q ss_pred cCc-ccccccccccc
Q 038150 472 AFP-KLKSLSIEVLR 485 (488)
Q Consensus 472 ~~p-~L~~L~l~~~p 485 (488)
.+| +|++|.+.++|
T Consensus 542 ~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 542 HFPKSLAFFNLTNNS 556 (606)
T ss_dssp GSCTTCCEEECCSCC
T ss_pred hhcccCcEEEccCCC
Confidence 465 58888887765
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=1.6e-20 Score=188.59 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=89.4
Q ss_pred ccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150 154 LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL 233 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l 233 (488)
....++.+.+..+....+| .+..+++|++|++++| .+.. . +. +.++++|++|++++|. +.
T Consensus 44 ~l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n-~l~~-~-~~-~~~l~~L~~L~l~~n~------l~--------- 103 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QLTD-I-TP-LKNLTKLVDILMNNNQ------IA--------- 103 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSS-CCCC-C-GG-GTTCTTCCEEECCSSC------CC---------
T ss_pred HhccccEEecCCCCCccCc-chhhhcCCCEEECCCC-ccCC-c-hh-hhccccCCEEECCCCc------cc---------
Confidence 3567889999888888887 4778999999999998 5554 3 33 8999999999999998 44
Q ss_pred cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCce
Q 038150 234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF 299 (488)
Q Consensus 234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 299 (488)
.+|. ++++++|++|++++|. +..+|. ++++++|++|++++|.+ ..++ .++++++|++|.+.
T Consensus 104 ~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 104 DITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFG 164 (466)
T ss_dssp CCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEE-CCCG-GGTTCTTCSEEEEE
T ss_pred cChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCcc-CCCh-hhccCCcccEeecC
Confidence 3444 7788888888888865 566654 77888888888887763 3333 35555555555553
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1e-20 Score=194.27 Aligned_cols=91 Identities=20% Similarity=0.101 Sum_probs=65.2
Q ss_pred cCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCc---hHHHhccCCcEEeecCCCCCC
Q 038150 348 KKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFP---SWMTSLTNLKSLDLSSCENCE 424 (488)
Q Consensus 348 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp---~~~~~l~~L~~L~l~~~~~~~ 424 (488)
.+++|+.|++++|.+.+.. ...+..++.+++|+.|++++|.+.. +| ..++.+++|++|++++|...
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~---------~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~- 400 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEY---------LKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH- 400 (549)
T ss_dssp HCTTCCEEECCSSCCCHHH---------HHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred cCccccEEEccCCcccccc---------ccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-
Confidence 4666777777777664221 1113346778899999999998876 54 34778899999999999755
Q ss_pred CCCC-CCCCCCcCeeeecccccceeeC
Q 038150 425 QLPP-LGKLQSLENLHIWRMESVKRVG 450 (488)
Q Consensus 425 ~~~~-l~~l~~L~~L~l~~~~~l~~~~ 450 (488)
.+|. ++.+++|++|++++|. ++.++
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~-l~~l~ 426 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTG-IRVVK 426 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSC-CSCCC
T ss_pred cCChhhcccccccEEECCCCC-ccccc
Confidence 5665 7888899999998886 55544
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=1e-20 Score=185.65 Aligned_cols=245 Identities=13% Similarity=0.080 Sum_probs=149.1
Q ss_pred cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150 177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL 256 (488)
Q Consensus 177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~ 256 (488)
.++++++|++.++ .+.. ..+..+..+++|++|++++|. +..+ .|..++.+++|++|++++|...
T Consensus 43 ~l~~l~~l~l~~~-~l~~-l~~~~~~~l~~L~~L~L~~n~------i~~~--------~~~~~~~l~~L~~L~L~~n~l~ 106 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRK-LPAALLDSFRQVELLNLNDLQ------IEEI--------DTYAFAYAHTIQKLYMGFNAIR 106 (390)
T ss_dssp GGCCCSEEEEESC-EESE-ECTHHHHHCCCCSEEECTTSC------CCEE--------CTTTTTTCTTCCEEECCSSCCC
T ss_pred ccCCceEEEecCC-chhh-CChhHhcccccCcEEECCCCc------cccc--------ChhhccCCCCcCEEECCCCCCC
Confidence 5799999999997 5654 555668999999999999998 4432 2347889999999999998744
Q ss_pred ccCchhhccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccccc--
Q 038150 257 KELPEGIGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLG-- 333 (488)
Q Consensus 257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~-- 333 (488)
...|..++++++|++|++++|. ...+|.. ++++++|++|++.+|.+... ....+..+++|+.|.+....
T Consensus 107 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 107 YLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERI-------EDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBC-------CTTTTSSCTTCCEEECCSSCCS
T ss_pred cCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCcc-------ChhhccCCCCCCEEECCCCcCC
Confidence 4445668999999999999998 4567766 58999999999999876541 12234556667766664322
Q ss_pred CCCChhhhhH------------hhcccCCCCCceeecccCchhhhhh---------hccccchHHHhhhCCCCCCCCEEE
Q 038150 334 DVSDVGEAKR------------LELDKKKYLSSLTLWFDKEEEEEGE---------RRKNEDNQLLLEALRPPLNLKELE 392 (488)
Q Consensus 334 ~~~~~~~~~~------------~~l~~l~~L~~L~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~L~~L~ 392 (488)
.++. ..+. ..+....+|+.|++++|.+...... ...+.... +.++..+++|+.|+
T Consensus 179 ~~~~--~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 179 HVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD 254 (390)
T ss_dssp BCCG--GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred cccc--ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--cHHHcCCCCccEEE
Confidence 1110 0000 0001112222233322222110000 00000000 13455566667777
Q ss_pred eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCc
Q 038150 393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGD 451 (488)
Q Consensus 393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~ 451 (488)
+++|.+....|..+..+++|++|++++|.... +|. .+.+|+|++|++++|. +..+|.
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~ 312 (390)
T 3o6n_A 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVER 312 (390)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSC-CCCCGG
T ss_pred CCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCc-ceecCc
Confidence 76666665345666666677777776665433 333 5556677777776664 444443
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.1e-20 Score=195.63 Aligned_cols=279 Identities=13% Similarity=0.068 Sum_probs=164.4
Q ss_pred cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150 177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL 256 (488)
Q Consensus 177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~ 256 (488)
.+.+++.|++.++ .+.. .++..+..+++|++|+|++|. +.. ..|..++.+++|++|++++|...
T Consensus 49 ~l~~l~~l~l~~~-~l~~-lp~~~~~~l~~L~~L~L~~n~------l~~--------~~~~~~~~l~~L~~L~L~~n~l~ 112 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRK-LPAALLDSFRQVELLNLNDLQ------IEE--------IDTYAFAYAHTIQKLYMGFNAIR 112 (597)
T ss_dssp GGCCCSEEEESSC-EESE-ECTHHHHHCCCCSEEECTTSC------CCE--------ECTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCCceEEEeeCC-CCCC-cCHHHHccCCCCcEEECCCCC------CCC--------CChHHhcCCCCCCEEECCCCcCC
Confidence 4789999999997 5655 666778999999999999998 442 23357889999999999998744
Q ss_pred ccCchhhccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccc--c
Q 038150 257 KELPEGIGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL--G 333 (488)
Q Consensus 257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~--~ 333 (488)
...|..++.+++|++|++++|.+ ..+|.. ++++++|++|++.+|.+.+. ....+..+++|+.|.+... .
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 113 YLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERI-------EDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBC-------CTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCHHHHcCCCCCCEEEeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCCC-------ChhhhhcCCcCcEEECcCCCCC
Confidence 44445679999999999999984 466655 69999999999999877652 1223455666776666432 2
Q ss_pred CCCChhhhhH------------hhcccCCCCCceeecccCchhhhhh---------hccccchHHHhhhCCCCCCCCEEE
Q 038150 334 DVSDVGEAKR------------LELDKKKYLSSLTLWFDKEEEEEGE---------RRKNEDNQLLLEALRPPLNLKELE 392 (488)
Q Consensus 334 ~~~~~~~~~~------------~~l~~l~~L~~L~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~L~~L~ 392 (488)
.++. ..++ ..+....+|+.|++++|.+...... ...+.... +.++..+++|+.|+
T Consensus 185 ~~~~--~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~ 260 (597)
T 3oja_B 185 HVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD 260 (597)
T ss_dssp BCCG--GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred CcCh--hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEE
Confidence 2110 0000 0011112222233322222110000 00000001 24455666777777
Q ss_pred eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCC----CCCCCC
Q 038150 393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHH----GSSSSS 467 (488)
Q Consensus 393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~----~~~~~~ 467 (488)
|++|.+....|..++.+++|+.|+|++|.... +|. .+.+|+|+.|++++|. +..+|..+..+..... ......
T Consensus 261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCCCC
Confidence 77776666446666667777777777766433 333 5556777777776665 4444433211100000 000001
Q ss_pred cccccCcccccccccccc
Q 038150 468 SVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 468 ~~~~~~p~L~~L~l~~~p 485 (488)
...+.+|+|+.|.+.++|
T Consensus 339 ~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 339 LKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCTTCCCSEEECCSSC
T ss_pred cChhhcCCCCEEEeeCCC
Confidence 124567777777777654
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=1.9e-20 Score=192.63 Aligned_cols=126 Identities=15% Similarity=0.106 Sum_probs=88.3
Q ss_pred cccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150 155 DEKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL 233 (488)
Q Consensus 155 ~~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l 233 (488)
...++.+++..+....++ ..+..+++|++|++++| .+.. ..|..|.++++|++|+|++|. +..+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~Ls~N~------l~~l------- 115 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRS-LDFHVFLFNQDLEYLDVSHNR------LQNI------- 115 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCE-ECTTTTTTCTTCCEEECTTSC------CCEE-------
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCc-CCHHHhCCCCCCCEEECCCCc------CCcc-------
Confidence 378899999999887776 57889999999999998 5655 556778999999999999999 5544
Q ss_pred cCchhhhhhccCcEeecCCCCCccc--CchhhccccccceeeccCCCCCCCCCCCCCCcccc--cccCceeecC
Q 038150 234 VLPETLCELYNLEKLDISDCFNLKE--LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGL--RTLGEFHVSA 303 (488)
Q Consensus 234 ~lp~~i~~L~~L~~L~l~~~~~~~~--lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L--~~L~l~~~~~ 303 (488)
|.. .+++|++|++++|. +.. +|..++++++|++|++++|.+.. ..++.+++| ++|++..|.+
T Consensus 116 --p~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 116 --SCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp --CSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSC
T ss_pred --Ccc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccc
Confidence 433 56777777777765 333 34667777777777777766432 223333333 5555555443
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=8e-21 Score=179.99 Aligned_cols=245 Identities=17% Similarity=0.064 Sum_probs=157.7
Q ss_pred eEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhh
Q 038150 161 LMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC 240 (488)
Q Consensus 161 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~ 240 (488)
+.........+|..+ .+++++|++.+| .+.. ..+..|.++++|++|++++|. +..+. ..|..+.
T Consensus 12 l~c~~~~l~~ip~~~--~~~l~~L~L~~n-~l~~-i~~~~~~~l~~L~~L~L~~n~------l~~~~------~~~~~~~ 75 (306)
T 2z66_A 12 IRCNSKGLTSVPTGI--PSSATRLELESN-KLQS-LPHGVFDKLTQLTKLSLSSNG------LSFKG------CCSQSDF 75 (306)
T ss_dssp EECCSSCCSSCCSCC--CTTCCEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSC------CCEEE------EEEHHHH
T ss_pred EEcCCCCcccCCCCC--CCCCCEEECCCC-ccCc-cCHhHhhccccCCEEECCCCc------cCccc------Ccccccc
Confidence 333333445555433 256777777765 3443 333345667777777777776 22110 2245556
Q ss_pred hhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCccccc
Q 038150 241 ELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLK 319 (488)
Q Consensus 241 ~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 319 (488)
.+++|++|++++|. +..+|..+..+++|++|++++|.+....+ ..+.++++|++|++.+|.... .....+.
T Consensus 76 ~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~ 147 (306)
T 2z66_A 76 GTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------AFNGIFN 147 (306)
T ss_dssp SCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-------CSTTTTT
T ss_pred cccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-------cchhhcc
Confidence 66777777777754 55566667777777777777766332222 356677777777776665432 1122344
Q ss_pred CCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCC
Q 038150 320 NLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN 399 (488)
Q Consensus 320 ~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 399 (488)
.+++|+.|.+....-.. ...+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+.
T Consensus 148 ~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLE------------QLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp TCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTSCCC------------EECTTTTTTCTTCCEEECTTSCCS
T ss_pred cCcCCCEEECCCCcccc---ccchhHHhhCcCCCEEECCCCCcC------------CcCHHHhcCCCCCCEEECCCCccC
Confidence 55566665554322100 012345677899999999999875 223567888999999999999988
Q ss_pred CCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCC-CcCeeeecccc
Q 038150 400 TVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQ-SLENLHIWRME 444 (488)
Q Consensus 400 ~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~-~L~~L~l~~~~ 444 (488)
...+..+..+++|++|++++|......+. +..+| +|++|++++|+
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 74455788899999999999998777665 78885 99999999987
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=2.1e-20 Score=186.94 Aligned_cols=242 Identities=16% Similarity=0.144 Sum_probs=181.1
Q ss_pred eeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhh
Q 038150 160 HLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETL 239 (488)
Q Consensus 160 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i 239 (488)
.+.........+|..+ .+++++|++++| .+.. ..+..|.++++|++|+|++|. +.. ..|..+
T Consensus 58 ~v~c~~~~l~~iP~~~--~~~l~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~Ls~n~------i~~--------~~~~~~ 119 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI--PSNTRYLNLMEN-NIQM-IQADTFRHLHHLEVLQLGRNS------IRQ--------IEVGAF 119 (452)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCE-ECTTTTTTCTTCCEEECCSSC------CCE--------ECTTTT
T ss_pred EEEECCCCcCccCCCC--CCCccEEECcCC-cCce-ECHHHcCCCCCCCEEECCCCc------cCC--------cChhhc
Confidence 4444444456677654 378999999997 5554 556678899999999999998 442 234567
Q ss_pred hhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150 240 CELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL 318 (488)
Q Consensus 240 ~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l 318 (488)
.++++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+.++++|++|++.++..... .....+
T Consensus 120 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------i~~~~~ 192 (452)
T 3zyi_A 120 NGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY------ISEGAF 192 (452)
T ss_dssp TTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE------ECTTTT
T ss_pred cCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc------cChhhc
Confidence 889999999999976 556655 478899999999999985433334688999999999987544331 112345
Q ss_pred cCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC
Q 038150 319 KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG 398 (488)
Q Consensus 319 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 398 (488)
..+++|+.|.+....-.. . ..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+
T Consensus 193 ~~l~~L~~L~L~~n~l~~-~-----~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKD-M-----PNLTPLVGLEELEMSGNHFP------------EIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp TTCTTCCEEECTTSCCSS-C-----CCCTTCTTCCEEECTTSCCS------------EECGGGGTTCTTCCEEECTTSCC
T ss_pred cCCCCCCEEECCCCcccc-c-----ccccccccccEEECcCCcCc------------ccCcccccCccCCCEEEeCCCcC
Confidence 667778887775432211 1 24677899999999999885 33367788999999999999999
Q ss_pred CCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 399 NTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 399 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
....|..+..+++|+.|+|++|......+. +..+++|+.|++++|+
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 885678888999999999999986654444 7889999999999886
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=185.34 Aligned_cols=241 Identities=16% Similarity=0.168 Sum_probs=182.0
Q ss_pred eeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchh
Q 038150 159 RHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPET 238 (488)
Q Consensus 159 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~ 238 (488)
+.+.........+|..+. ++++.|++.+| .+.. ..+..|.++++|++|+|++|. +.. ..|..
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~Ls~n~------i~~--------i~~~~ 107 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHEN-QIQI-IKVNSFKHLRHLEILQLSRNH------IRT--------IEIGA 107 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSC-CCCE-ECTTTTSSCSSCCEEECCSSC------CCE--------ECGGG
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCC-cCCe-eCHHHhhCCCCCCEEECCCCc------CCc--------cChhh
Confidence 345444455577776553 78999999997 5554 455668899999999999998 442 23456
Q ss_pred hhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150 239 LCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES 317 (488)
Q Consensus 239 i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 317 (488)
+.++++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+.++++|++|++.++..... .....
T Consensus 108 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~------i~~~~ 180 (440)
T 3zyj_A 108 FNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY------ISEGA 180 (440)
T ss_dssp GTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE------ECTTT
T ss_pred ccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce------eCcch
Confidence 7889999999999975 566665 588999999999999985443345688999999999987554331 11234
Q ss_pred ccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecc
Q 038150 318 LKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEY 395 (488)
Q Consensus 318 l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 395 (488)
+.++++|+.|.+... ..++ .+..+++|+.|++++|.+. ...+..+..+++|+.|++++
T Consensus 181 ~~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLREIP--------NLTPLIKLDELDLSGNHLS------------AIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp TTTCSSCCEEECTTSCCSSCC--------CCTTCSSCCEEECTTSCCC------------EECTTTTTTCTTCCEEECTT
T ss_pred hhcccccCeecCCCCcCcccc--------ccCCCcccCEEECCCCccC------------ccChhhhccCccCCEEECCC
Confidence 566777888777543 3332 3677899999999999875 23357788999999999999
Q ss_pred ccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 396 YRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 396 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
|.+....|..+..+++|+.|+|++|......+. +..+++|+.|++++|+
T Consensus 241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 999885677788999999999999986654444 7889999999999887
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=9.8e-21 Score=177.42 Aligned_cols=222 Identities=15% Similarity=0.107 Sum_probs=141.5
Q ss_pred eeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchh
Q 038150 159 RHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPET 238 (488)
Q Consensus 159 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~ 238 (488)
+.++........+|..+ .+++++|++.+| .+.. ..+..|..+++|++|++++|. +.. ..|..
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~-~~~~~~~~~~~L~~L~l~~n~------l~~--------~~~~~ 75 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN-RISH-VPAASFRACRNLTILWLHSNV------LAR--------IDAAA 75 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC------CCE--------ECTTT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCC-cCCc-cCHHHcccCCCCCEEECCCCc------cce--------eCHhh
Confidence 34444444556666543 578899999887 5554 455567888999999999988 332 23567
Q ss_pred hhhhccCcEeecCCCCCcccC-chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150 239 LCELYNLEKLDISDCFNLKEL-PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES 317 (488)
Q Consensus 239 i~~L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 317 (488)
++.+++|++|++++|..+..+ |..+..+++|++|++++|.+....|..++++++|++|++.+|.+.. .+ ...
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~--~~~ 148 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-----LP--DDT 148 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----CC--TTT
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-----cC--HhH
Confidence 788899999999997645655 6678889999999999988665556778889999999888876554 11 112
Q ss_pred ccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecc
Q 038150 318 LKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEY 395 (488)
Q Consensus 318 l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 395 (488)
+..+++|+.|.+... ..++ ...+..+++|+.|++++|.+. ...+..+..+++|+.|++++
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVP------ERAFRGLHSLDRLLLHQNRVA------------HVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEEECCSSCCC------------EECTTTTTTCTTCCEEECCS
T ss_pred hccCCCccEEECCCCcccccC------HHHhcCccccCEEECCCCccc------------ccCHhHccCcccccEeeCCC
Confidence 344455555544332 1111 123455566666666666553 22244555566666666666
Q ss_pred ccCCCCCchHHHhccCCcEEeecCCCCC
Q 038150 396 YRGNTVFPSWMTSLTNLKSLDLSSCENC 423 (488)
Q Consensus 396 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 423 (488)
|.+....+..+..+++|+.|++++|+..
T Consensus 211 n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 211 NNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 6665522344556666666666666543
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=3.6e-20 Score=190.20 Aligned_cols=126 Identities=19% Similarity=0.086 Sum_probs=75.8
Q ss_pred cccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCC
Q 038150 346 LDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQ 425 (488)
Q Consensus 346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 425 (488)
+..+++|+.|++++|.+... ......+..+++|+.|++++|.+.. +|..++.+++|++|++++|... .
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~-~ 424 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSM----------QKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-V 424 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCH----------HHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCS-C
T ss_pred hhccccCcEEEccCCccccc----------ccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcc-c
Confidence 66788999999999988533 1122446667788888888887775 7777777777777777777643 2
Q ss_pred CCC-------------------CCCCCCcCeeeecccccceeeCccccCCCC-------CCCCCCCCCcccccCcccccc
Q 038150 426 LPP-------------------LGKLQSLENLHIWRMESVKRVGDEFLGIES-------DHHGSSSSSSVIIAFPKLKSL 479 (488)
Q Consensus 426 ~~~-------------------l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~p~L~~L 479 (488)
+|. .+.+++|++|++++|. ++.+|... .... ...-........+.+++|+.|
T Consensus 425 l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 425 VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCCGG-GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCCcc-cCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence 221 1356777777777774 55555321 0100 000011111124567788888
Q ss_pred cccccc
Q 038150 480 SIEVLR 485 (488)
Q Consensus 480 ~l~~~p 485 (488)
++.++|
T Consensus 503 ~l~~N~ 508 (549)
T 2z81_A 503 WLHTNP 508 (549)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 877665
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=4.5e-20 Score=198.60 Aligned_cols=277 Identities=16% Similarity=0.112 Sum_probs=189.2
Q ss_pred eeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC-chh
Q 038150 160 HLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL-PET 238 (488)
Q Consensus 160 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l-p~~ 238 (488)
.++.+.+....+|. ..+++++|++++| .+.. ..+..|.++++|++|+|++|.. +. .+ |..
T Consensus 8 ~~dcs~~~L~~vP~---lp~~l~~LdLs~N-~i~~-i~~~~~~~l~~L~~LdLs~n~~-----~~---------~i~~~~ 68 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ---VLNTTERLLLSFN-YIRT-VTASSFPFLEQLQLLELGSQYT-----PL---------TIDKEA 68 (844)
T ss_dssp EEEESCCCSSCCCS---SCTTCCEEEEESC-CCCE-ECSSSCSSCCSCSEEEECTTCC-----CC---------EECTTT
T ss_pred EEEccCCCCCCCCC---CCCCcCEEECCCC-cCCc-cChhHCcccccCeEEeCCCCCC-----cc---------ccCHHH
Confidence 34444555677786 4689999999998 5655 5566789999999999999964 44 34 567
Q ss_pred hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCC--CCCcccccccCceeecCCCCCCCCcccCcc
Q 038150 239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVG--IGRLTGLRTLGEFHVSAGGGVDGRKACRLE 316 (488)
Q Consensus 239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 316 (488)
++++++|++|++++|......|..++++++|++|++++|.+...+|.. ++++++|++|++++|.+.+ .....
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~------~~~~~ 142 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------LYLHP 142 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC------CCCCG
T ss_pred hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc------cccch
Confidence 889999999999998755556889999999999999999976666665 8999999999999998765 11224
Q ss_pred cccCCCcccccccccc--cCCCChhhhhHhhcccC--CC------------------------------CCceeecccCc
Q 038150 317 SLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKK--KY------------------------------LSSLTLWFDKE 362 (488)
Q Consensus 317 ~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l--~~------------------------------L~~L~l~~~~~ 362 (488)
.+.++++|+.|.+... ..... ..+..+ ++ |+.|++++|.+
T Consensus 143 ~~~~L~~L~~L~Ls~N~i~~~~~------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 143 SFGKLNSLKSIDFSSNQIFLVCE------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp GGGTCSSCCEEEEESSCCCCCCS------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred hHhhCCCCCEEECCCCcCCeeCH------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 5677888888777543 22211 111111 33 55555555544
Q ss_pred hhhhhhhcccc------------------------chHHHhhhCCC--CCCCCEEEeccccCCCCCchHHHhccCCcEEe
Q 038150 363 EEEEGERRKNE------------------------DNQLLLEALRP--PLNLKELEIEYYRGNTVFPSWMTSLTNLKSLD 416 (488)
Q Consensus 363 ~~~~~~~~~~~------------------------~~~~~~~~~~~--~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 416 (488)
....+...... ........+.. +++|+.|++++|.+....|..+..+++|+.|+
T Consensus 217 ~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 296 (844)
T 3j0a_A 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296 (844)
T ss_dssp STTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEE
T ss_pred chhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEE
Confidence 32211000000 00000111111 25788888888877765567777888888888
Q ss_pred ecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCccccccccccc
Q 038150 417 LSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVL 484 (488)
Q Consensus 417 l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 484 (488)
+++|......+. ++.+++|++|++++|. +..++... .+.+|+|+.|.+.++
T Consensus 297 L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~----------------~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 297 LAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSN----------------FYGLPKVAYIDLQKN 348 (844)
T ss_dssp EESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCS----------------CSSCTTCCEEECCSC
T ss_pred CCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHH----------------hcCCCCCCEEECCCC
Confidence 888886665555 7888888888888886 43332211 456889999988764
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=1.1e-20 Score=194.55 Aligned_cols=129 Identities=17% Similarity=0.091 Sum_probs=105.5
Q ss_pred ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150 156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL 235 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l 235 (488)
...+.+++..+....+|..+. +++++|++++| .+.. ..+..|.++++|++|+|++|. +.. ..
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N-~i~~-~~~~~~~~l~~L~~L~Ls~N~------l~~--------~~ 92 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQN-SISE-LRMPDISFLSELRVLRLSHNR------IRS--------LD 92 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC--TTCCEEECCSS-CCCC-CCGGGTTTCTTCCEEECCSCC------CCE--------EC
T ss_pred CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCC-Cccc-cChhhhccCCCccEEECCCCC------CCc--------CC
Confidence 344788888888888887653 89999999998 5655 556679999999999999999 442 33
Q ss_pred chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecCCC
Q 038150 236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~ 305 (488)
|..++++++|++|++++|. +..+|.. .+++|++|++++|.+.. .+|..++++++|++|++.+|.+..
T Consensus 93 ~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 93 FHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred HHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 5678899999999999976 6788877 89999999999999544 345789999999999999987764
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=1.4e-19 Score=180.53 Aligned_cols=208 Identities=17% Similarity=0.120 Sum_probs=145.5
Q ss_pred ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCC
Q 038150 174 STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDC 253 (488)
Q Consensus 174 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~ 253 (488)
.+.++++|++|++++| .+.+ +| .+..+++|++|++++|. +. .+| ++.+++|++|++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n-~l~~--~~-~l~~l~~L~~L~Ls~n~------l~---------~~~--~~~l~~L~~L~Ls~N 95 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS-SITD--MT-GIEKLTGLTKLICTSNN------IT---------TLD--LSQNTNLTYLACDSN 95 (457)
T ss_dssp EHHHHTTCCEEECCSS-CCCC--CT-TGGGCTTCSEEECCSSC------CS---------CCC--CTTCTTCSEEECCSS
T ss_pred ChhHcCCCCEEEccCC-Cccc--Ch-hhcccCCCCEEEccCCc------CC---------eEc--cccCCCCCEEECcCC
Confidence 5678999999999998 5664 34 48999999999999999 44 444 778999999999997
Q ss_pred CCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccccc
Q 038150 254 FNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLG 333 (488)
Q Consensus 254 ~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~ 333 (488)
. +..+| ++++++|++|++++|.+. .+| ++++++|++|++.+|.+.+ . .+..+++|+.|.+....
T Consensus 96 ~-l~~~~--~~~l~~L~~L~L~~N~l~-~l~--~~~l~~L~~L~l~~N~l~~-----l-----~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 96 K-LTNLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLTE-----I-----DVSHNTQLTELDCHLNK 159 (457)
T ss_dssp C-CSCCC--CTTCTTCCEEECCSSCCS-CCC--CTTCTTCCEEECTTSCCSC-----C-----CCTTCTTCCEEECTTCS
T ss_pred C-Cceee--cCCCCcCCEEECCCCcCC-eec--CCCCCcCCEEECCCCccce-----e-----ccccCCcCCEEECCCCC
Confidence 6 66665 899999999999999854 455 8999999999999887765 1 25566777777776554
Q ss_pred CCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCc
Q 038150 334 DVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLK 413 (488)
Q Consensus 334 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 413 (488)
.+.. ..+..+++|+.|++++|.+.+ ++ +..+++|+.|.+++|.+.. ++ ++.+++|+
T Consensus 160 ~~~~------~~~~~l~~L~~L~ls~n~l~~-------------l~--l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~ 215 (457)
T 3bz5_A 160 KITK------LDVTPQTQLTTLDCSFNKITE-------------LD--VSQNKLLNRLNCDTNNITK-LD--LNQNIQLT 215 (457)
T ss_dssp CCCC------CCCTTCTTCCEEECCSSCCCC-------------CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCS
T ss_pred cccc------cccccCCcCCEEECCCCccce-------------ec--cccCCCCCEEECcCCcCCe-ec--cccCCCCC
Confidence 3332 135566777777777776642 12 4455566666666665554 32 44555666
Q ss_pred EEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150 414 SLDLSSCENCEQLPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 414 ~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 444 (488)
+|++++|.... +| ++.+++|+.|++++|.
T Consensus 216 ~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 216 FLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EEECCSSCCSC-CC-CTTCTTCSEEECCSSC
T ss_pred EEECcCCcccc-cC-ccccCCCCEEEeeCCc
Confidence 66666555433 44 5555556666555554
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=192.03 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=26.8
Q ss_pred ccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCc
Q 038150 156 EKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSY 216 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~ 216 (488)
..++++++..+....++ ..+.++++|++|++.+| .+.. ..+..|.++++|++|++++|.
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQS-LALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCE-ECTTTTTTCTTCCEEECTTSC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCc-cCHhhhcCccccccccccccc
Confidence 34445555444443332 23444555555555554 2322 233344455555555555554
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=2.3e-19 Score=179.49 Aligned_cols=245 Identities=15% Similarity=0.089 Sum_probs=187.1
Q ss_pred cceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCc
Q 038150 181 MRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELP 260 (488)
Q Consensus 181 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp 260 (488)
.+.++..+. .+. .+|.. -.+++++|+|++|. +.. ..|..++++++|++|++++|......|
T Consensus 56 ~~~v~c~~~-~l~--~iP~~--~~~~l~~L~L~~n~------i~~--------~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 116 (452)
T 3zyi_A 56 FSKVVCTRR-GLS--EVPQG--IPSNTRYLNLMENN------IQM--------IQADTFRHLHHLEVLQLGRNSIRQIEV 116 (452)
T ss_dssp SCEEECCSS-CCS--SCCSC--CCTTCSEEECCSSC------CCE--------ECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CcEEEECCC-CcC--ccCCC--CCCCccEEECcCCc------Cce--------ECHHHcCCCCCCCEEECCCCccCCcCh
Confidence 456666654 444 24432 23689999999999 442 335678899999999999987544455
Q ss_pred hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhh
Q 038150 261 EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGE 340 (488)
Q Consensus 261 ~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~ 340 (488)
..+.++++|++|++++|.+....+..++++++|++|++.+|.+.. .+ ...+.++++|+.|.+..+..+...
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~--~~~~~~l~~L~~L~l~~~~~l~~i-- 187 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-----IP--SYAFNRVPSLMRLDLGELKKLEYI-- 187 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-----EC--TTTTTTCTTCCEEECCCCTTCCEE--
T ss_pred hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce-----eC--HhHHhcCCcccEEeCCCCCCcccc--
Confidence 789999999999999998544334558999999999999987654 11 234567788888887654433321
Q ss_pred hhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCC
Q 038150 341 AKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSC 420 (488)
Q Consensus 341 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 420 (488)
....+.++++|+.|++++|.+.. + ..+..+++|+.|++++|.+....|..+..+++|+.|++++|
T Consensus 188 -~~~~~~~l~~L~~L~L~~n~l~~-------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 188 -SEGAFEGLFNLKYLNLGMCNIKD-------------M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp -CTTTTTTCTTCCEEECTTSCCSS-------------C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred -ChhhccCCCCCCEEECCCCcccc-------------c-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 12357788999999999998742 2 35788899999999999999866889999999999999999
Q ss_pred CCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150 421 ENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 421 ~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
......+. +..+++|+.|++++|. ++.++.+. .+.+++|+.|.+.++|
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~----------------~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNN-LSSLPHDL----------------FTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTS----------------STTCTTCCEEECCSSC
T ss_pred cCceECHHHhcCCCCCCEEECCCCc-CCccChHH----------------hccccCCCEEEccCCC
Confidence 97766565 8899999999999986 67776543 3458899999998876
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.3e-20 Score=180.49 Aligned_cols=250 Identities=18% Similarity=0.166 Sum_probs=165.3
Q ss_pred ccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150 156 EKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV 234 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~ 234 (488)
..++++++..+....++. .+..+++|++|++.+| .+.. ..+..|.++++|++|++++|. +. .
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~------l~---------~ 114 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINT-IEEDSFSSLGSLEHLDLSYNY------LS---------N 114 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC------CS---------S
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCc-cCHhhcCCCCCCCEEECCCCc------CC---------c
Confidence 467777777777766655 5677788888888876 4544 445557778888888888887 44 3
Q ss_pred Cchh-hhhhccCcEeecCCCCCcccCch--hhccccccceeeccCCCCCCCC-CCCCCCcccccccCceeecCCCCCCCC
Q 038150 235 LPET-LCELYNLEKLDISDCFNLKELPE--GIGKLINVKHLLNRGTNSLRYM-PVGIGRLTGLRTLGEFHVSAGGGVDGR 310 (488)
Q Consensus 235 lp~~-i~~L~~L~~L~l~~~~~~~~lp~--~l~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~ 310 (488)
+|.. ++++++|++|++++|. +..+|. .++.+++|++|++++|.....+ |..++++++|++|++.+|.+.+
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----- 188 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS----- 188 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-----
T ss_pred CCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-----
Confidence 4444 6778888888888864 556665 5677888888888877434444 4567788888888887776553
Q ss_pred cccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCE
Q 038150 311 KACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKE 390 (488)
Q Consensus 311 ~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 390 (488)
.....+.++++|+.|.+....- ... ....+..+++|+.|++++|.+.+... .. .......+.++.
T Consensus 189 --~~~~~l~~l~~L~~L~l~~n~l-~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~-l~~~~~~~~l~~ 253 (353)
T 2z80_A 189 --YEPKSLKSIQNVSHLILHMKQH-ILL---LEIFVDVTSSVECLELRDTDLDTFHF--------SE-LSTGETNSLIKK 253 (353)
T ss_dssp --ECTTTTTTCSEEEEEEEECSCS-TTH---HHHHHHHTTTEEEEEEESCBCTTCCC--------C-------CCCCCCE
T ss_pred --cCHHHHhccccCCeecCCCCcc-ccc---hhhhhhhcccccEEECCCCccccccc--------cc-cccccccchhhc
Confidence 1223455666777766654332 111 11233456778888888887643210 00 111233556777
Q ss_pred EEeccccCCC----CCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccc
Q 038150 391 LEIEYYRGNT----VFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRME 444 (488)
Q Consensus 391 L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~ 444 (488)
+.+.++.+.. .+|.++..+++|++|++++|... .+|. ++.+++|++|++++|+
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 7777765543 26778888999999999999865 5665 5889999999999887
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=4.6e-20 Score=178.41 Aligned_cols=232 Identities=15% Similarity=0.117 Sum_probs=105.6
Q ss_pred cccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150 155 DEKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL 233 (488)
Q Consensus 155 ~~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l 233 (488)
...++.+++..+....++ ..+..+++|++|++++| .+.. ..+..+.++++|++|++++|. +.
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n~------l~--------- 137 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSN-LSSSWFKPLSSLTFLNLLGNP------YK--------- 137 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSS-CCHHHHTTCTTCSEEECTTCC------CS---------
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCc-CCHhHhCCCccCCEEECCCCC------Cc---------
Confidence 344555555555444432 23455555555555554 3332 333335555555555555555 33
Q ss_pred cCch--hhhhhccCcEeecCCCCCcccC-chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCC
Q 038150 234 VLPE--TLCELYNLEKLDISDCFNLKEL-PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGR 310 (488)
Q Consensus 234 ~lp~--~i~~L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~ 310 (488)
.+|. .++.+++|++|++++|..+..+ |..++.+++|++|++++|.+....|..++++++|++|++.+|....
T Consensus 138 ~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~----- 212 (353)
T 2z80_A 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL----- 212 (353)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-----
T ss_pred ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-----
Confidence 2222 3445555555555555333333 3345555555555555555444444555555555555555554322
Q ss_pred cccCcccccCCCccccccccccc--CCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCC
Q 038150 311 KACRLESLKNLEHLQVCGISRLG--DVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNL 388 (488)
Q Consensus 311 ~~~~~~~l~~L~~L~~L~~~~~~--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 388 (488)
.+. .....+++|+.|.+.... ..+. ...........++.+++..+.+.+.. ...+|.++..+++|
T Consensus 213 ~~~--~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~~~~~~~l~~l~L~~~~l~~~~--------l~~l~~~l~~l~~L 279 (353)
T 2z80_A 213 LLE--IFVDVTSSVECLELRDTDLDTFHF---SELSTGETNSLIKKFTFRNVKITDES--------LFQVMKLLNQISGL 279 (353)
T ss_dssp HHH--HHHHHTTTEEEEEEESCBCTTCCC---C------CCCCCCEEEEESCBCCHHH--------HHHHHHHHHTCTTC
T ss_pred chh--hhhhhcccccEEECCCCccccccc---cccccccccchhhccccccccccCcc--------hhhhHHHHhcccCC
Confidence 111 011223444444443221 1110 00011222344455555555443221 13344555555555
Q ss_pred CEEEeccccCCCCCchHH-HhccCCcEEeecCCCC
Q 038150 389 KELEIEYYRGNTVFPSWM-TSLTNLKSLDLSSCEN 422 (488)
Q Consensus 389 ~~L~l~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~ 422 (488)
+.|++++|.+.. +|.++ +.+++|++|++++|+.
T Consensus 280 ~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 280 LELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCc
Confidence 555555555554 54443 4555555555555543
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=191.79 Aligned_cols=252 Identities=19% Similarity=0.155 Sum_probs=159.0
Q ss_pred ccccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 154 LDEKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
....++++++..+....++ ..+..+++|++|++++| .+.. ..+..|.++++|++|+|++|. +..+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~-i~~~~~~~l~~L~~L~L~~n~------l~~~------ 91 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQT-IEDGAYQSLSHLSTLILTGNP------IQSL------ 91 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCE-ECTTTTTTCTTCCEEECTTCC------CCEE------
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCc-cCcccccCchhCCEEeCcCCc------CCcc------
Confidence 3467899999998887664 46889999999999998 5655 556678999999999999998 4432
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecCCCCCCCC
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSAGGGVDGR 310 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~ 310 (488)
.|..++++++|++|++++|. +..+|. .++++++|++|++++|.+.. .+|..++++++|++|++.+|.+....
T Consensus 92 --~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~--- 165 (570)
T 2z63_A 92 --ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--- 165 (570)
T ss_dssp --CTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC---
T ss_pred --CHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec---
Confidence 23556777778888887764 555544 47777778888887776443 35777777777777777766554311
Q ss_pred cccCcccccCCC------------------------ccccccccccc---------------------------------
Q 038150 311 KACRLESLKNLE------------------------HLQVCGISRLG--------------------------------- 333 (488)
Q Consensus 311 ~~~~~~~l~~L~------------------------~L~~L~~~~~~--------------------------------- 333 (488)
+..+..+.+++ +|+.+.+....
T Consensus 166 -~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 166 -CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp -GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred -HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 11122222221 12222211100
Q ss_pred CCC---------------------ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150 334 DVS---------------------DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE 392 (488)
Q Consensus 334 ~~~---------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 392 (488)
.++ ......+..+..+++|+.|+++++.+ ..+|..+..+ +|+.|+
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-------------~~l~~~~~~~-~L~~L~ 310 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-------------ERVKDFSYNF-GWQHLE 310 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-------------CSCCBCCSCC-CCSEEE
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-------------hhhhhhhccC-CccEEe
Confidence 000 00011123445567777777777765 2345566666 777777
Q ss_pred eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150 393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 444 (488)
+++|.+.. +|. ..+++|++|++++|......+. ..+++|++|++++|.
T Consensus 311 l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 311 LVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG 358 (570)
T ss_dssp EESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC
T ss_pred eccCcccc-cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc
Confidence 77777765 665 3566777777777665544443 566777777776665
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=2.9e-19 Score=188.28 Aligned_cols=255 Identities=18% Similarity=0.101 Sum_probs=171.8
Q ss_pred eEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhh
Q 038150 161 LMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC 240 (488)
Q Consensus 161 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~ 240 (488)
++........+|..+. +++++|++++| .+.. ..+..|.++++|++|++++|.+ .+ ..|..++
T Consensus 9 ~~cs~~~L~~ip~~~~--~~l~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~l-----~~---------~~~~~~~ 70 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLP--TNITVLNLTHN-QLRR-LPAANFTRYSQLTSLDVGFNTI-----SK---------LEPELCQ 70 (680)
T ss_dssp EECCSSCCSSCCSCSC--TTCSEEECCSS-CCCC-CCGGGGGGGTTCSEEECCSSCC-----CC---------CCTTHHH
T ss_pred eECCCCCccccccccC--CCCcEEECCCC-CCCC-cCHHHHhCCCcCcEEECCCCcc-----Cc---------cCHHHHh
Confidence 4444445567776553 79999999998 5655 5566689999999999999984 33 4467899
Q ss_pred hhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccccc
Q 038150 241 ELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLK 319 (488)
Q Consensus 241 ~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 319 (488)
++++|++|++++|. +..+|. .++++++|++|++++|.+....|..++++++|++|++.+|.+.+. ....+.
T Consensus 71 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~ 142 (680)
T 1ziw_A 71 KLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-------KLGTQV 142 (680)
T ss_dssp HCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-------CCCSSS
T ss_pred cccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc-------Cchhhc
Confidence 99999999999976 667776 589999999999999986554456799999999999999877652 233456
Q ss_pred CCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhh------------ccccch----HHHhhhCC
Q 038150 320 NLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGER------------RKNEDN----QLLLEALR 383 (488)
Q Consensus 320 ~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------~~~~~~----~~~~~~~~ 383 (488)
++++|+.|.+....-....... .....+++|+.|++++|.+.+..+.. ..+... ..++..+
T Consensus 143 ~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l- 219 (680)
T 1ziw_A 143 QLENLQELLLSNNKIQALKSEE--LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL- 219 (680)
T ss_dssp CCTTCCEEECCSSCCCCBCHHH--HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-
T ss_pred ccccCCEEEccCCcccccCHHH--hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-
Confidence 7778888777543211110000 11224577888888887664332110 000000 1111111
Q ss_pred CCCCCCEEEeccccCCCCCchHHHhccC--CcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 384 PPLNLKELEIEYYRGNTVFPSWMTSLTN--LKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 384 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~--L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
..++|+.|++++|.+....|.++..++. |+.|++++|......+. ++.+++|++|++++|.
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 2356777777777776655666666543 88888877775554444 7777778888777775
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=6.1e-21 Score=181.17 Aligned_cols=247 Identities=16% Similarity=0.137 Sum_probs=178.7
Q ss_pred cceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHh-------cCCccceeecCCCcccccccCCccccc
Q 038150 157 KVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFR-------ELTSLRALDFGGSYHSTRLLTPEVPRN 229 (488)
Q Consensus 157 ~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-------~l~~Lr~L~Ls~~~~~~~~~~~~lp~~ 229 (488)
.++.+.++.+.. .+|..+... |++|++.+|..-.. .++..+. ++++|++|++++|.+ .+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-----~~----- 109 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAA-RIPSRILFGALRVLGISGLQELTLENLEV-----TG----- 109 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEE-ECBHHHHHHHHHHHTTSCCCEEEEEEEBC-----BS-----
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCC-CcCHHHHHHHHHhcCcCCccEEEccCCcc-----cc-----
Confidence 444555555555 556655443 88888888732122 2333333 789999999999985 44
Q ss_pred ccCccCchhh--hhhccCcEeecCCCCCcccCchhhccc-----cccceeeccCCCCCCCCCCCCCCcccccccCceeec
Q 038150 230 IEKLVLPETL--CELYNLEKLDISDCFNLKELPEGIGKL-----INVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS 302 (488)
Q Consensus 230 i~~l~lp~~i--~~L~~L~~L~l~~~~~~~~lp~~l~~L-----~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 302 (488)
.+|..+ +.+++|++|++++|. +..+|..++.+ ++|++|++++|.+....|..++++++|++|++++|.
T Consensus 110 ----~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 110 ----TAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp ----CCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred ----hhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 445554 788999999999976 55558888877 899999999999666555789999999999999887
Q ss_pred CCCCCCCCcccCcccc--cCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh-
Q 038150 303 AGGGVDGRKACRLESL--KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL- 379 (488)
Q Consensus 303 ~~~~~~~~~~~~~~~l--~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~- 379 (488)
..+ ....+..+ ..+++|+.|.+.... +..........+..+++|+.|++++|.+.+. .+
T Consensus 185 l~~-----~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------~~~ 246 (312)
T 1wwl_A 185 ELG-----ERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDA------------AGA 246 (312)
T ss_dssp TCH-----HHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSS------------CCC
T ss_pred cCc-----chHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcc------------cch
Confidence 543 11112233 677888888886543 2222233334456789999999999988532 12
Q ss_pred hhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150 380 EALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 380 ~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 444 (488)
..+..+++|+.|++++|.+.. +|.++. ++|++|++++|.... +|.+..+++|++|++++|+
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~-~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDR-NPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCS-CCCTTTSCEEEEEECTTCT
T ss_pred hhhhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCC-ChhHhhCCCCCEEeccCCC
Confidence 345567899999999999986 888775 899999999998554 4668899999999999886
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=176.05 Aligned_cols=244 Identities=15% Similarity=0.121 Sum_probs=186.4
Q ss_pred cceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCc
Q 038150 181 MRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELP 260 (488)
Q Consensus 181 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp 260 (488)
.+.++..+. .+. .+|.. -.+++++|+|++|. +..+ .+..+.++++|++|++++|......|
T Consensus 45 ~~~v~c~~~-~l~--~iP~~--~~~~l~~L~L~~n~------i~~~--------~~~~~~~l~~L~~L~Ls~n~i~~i~~ 105 (440)
T 3zyj_A 45 FSKVICVRK-NLR--EVPDG--ISTNTRLLNLHENQ------IQII--------KVNSFKHLRHLEILQLSRNHIRTIEI 105 (440)
T ss_dssp SCEEECCSC-CCS--SCCSC--CCTTCSEEECCSCC------CCEE--------CTTTTSSCSSCCEEECCSSCCCEECG
T ss_pred CCEEEeCCC-CcC--cCCCC--CCCCCcEEEccCCc------CCee--------CHHHhhCCCCCCEEECCCCcCCccCh
Confidence 456666664 444 34432 23789999999999 4432 23578899999999999987444455
Q ss_pred hhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChh
Q 038150 261 EGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVG 339 (488)
Q Consensus 261 ~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~ 339 (488)
..+..+++|++|++++|.+. .+| ..+.++++|++|++.+|.+.. . ....+.++++|+.|.+.....+...
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~-----~--~~~~~~~l~~L~~L~l~~~~~l~~i- 176 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIES-----I--PSYAFNRIPSLRRLDLGELKRLSYI- 176 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCE-----E--CTTTTTTCTTCCEEECCCCTTCCEE-
T ss_pred hhccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccc-----c--CHHHhhhCcccCEeCCCCCCCccee-
Confidence 77899999999999999854 555 468999999999999987654 1 1234567788888887654433321
Q ss_pred hhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecC
Q 038150 340 EAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSS 419 (488)
Q Consensus 340 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 419 (488)
....+.++++|+.|++++|.+.. +| .+..+++|+.|+|++|.+....|..+..+++|++|++++
T Consensus 177 --~~~~~~~l~~L~~L~L~~n~l~~-------------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 177 --SEGAFEGLSNLRYLNLAMCNLRE-------------IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp --CTTTTTTCSSCCEEECTTSCCSS-------------CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred --CcchhhcccccCeecCCCCcCcc-------------cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 12457789999999999998742 23 578889999999999999885688899999999999999
Q ss_pred CCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150 420 CENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 420 ~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
|......+. +..+++|+.|+|++|. ++.++... ...+++|+.|.+.++|
T Consensus 241 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~----------------~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 241 SQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDL----------------FTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTT----------------TSSCTTCCEEECCSSC
T ss_pred CceeEEChhhhcCCCCCCEEECCCCC-CCccChhH----------------hccccCCCEEEcCCCC
Confidence 987666555 8899999999999986 77776543 3458899999998765
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.2e-19 Score=171.90 Aligned_cols=244 Identities=18% Similarity=0.096 Sum_probs=183.1
Q ss_pred ceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchh-hhhhccCcEeecCCCCCcccC-
Q 038150 182 RTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPET-LCELYNLEKLDISDCFNLKEL- 259 (488)
Q Consensus 182 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~-i~~L~~L~~L~l~~~~~~~~l- 259 (488)
+.+++.++ .+. .+|. .-.++|++|++++|. +. .+|.. ++++++|++|++++|. +..+
T Consensus 10 ~~l~c~~~-~l~--~ip~--~~~~~l~~L~L~~n~------l~---------~i~~~~~~~l~~L~~L~L~~n~-l~~~~ 68 (306)
T 2z66_A 10 TEIRCNSK-GLT--SVPT--GIPSSATRLELESNK------LQ---------SLPHGVFDKLTQLTKLSLSSNG-LSFKG 68 (306)
T ss_dssp TEEECCSS-CCS--SCCS--CCCTTCCEEECCSSC------CC---------CCCTTTTTTCTTCSEEECCSSC-CCEEE
T ss_pred CEEEcCCC-Ccc--cCCC--CCCCCCCEEECCCCc------cC---------ccCHhHhhccccCCEEECCCCc-cCccc
Confidence 45666664 344 2443 234689999999999 55 44444 5789999999999976 4433
Q ss_pred --chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCC
Q 038150 260 --PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSD 337 (488)
Q Consensus 260 --p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~ 337 (488)
|..+..+++|++|++++|. ...+|..+.++++|++|++.+|.+.. ......+..+++|+.|.+....-.
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~l~~L~~L~l~~n~l~-- 139 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQ------MSEFSVFLSLRNLIYLDISHTHTR-- 139 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEES------STTTTTTTTCTTCCEEECTTSCCE--
T ss_pred CcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccc------cccchhhhhccCCCEEECCCCcCC--
Confidence 6778889999999999998 45678789999999999999887665 112245667788888887654321
Q ss_pred hhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEee
Q 038150 338 VGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDL 417 (488)
Q Consensus 338 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 417 (488)
...+..+..+++|+.|++++|.+.. ...|..+..+++|+.|++++|.+....|.++..+++|++|++
T Consensus 140 --~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 140 --VAFNGIFNGLSSLEVLKMAGNSFQE-----------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp --ECSTTTTTTCTTCCEEECTTCEEGG-----------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred --ccchhhcccCcCCCEEECCCCcccc-----------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 1123457788999999999998742 135678899999999999999998855888999999999999
Q ss_pred cCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCc-ccccccccccc
Q 038150 418 SSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFP-KLKSLSIEVLR 485 (488)
Q Consensus 418 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~L~~L~l~~~p 485 (488)
++|......+. +..+++|+.|++++|. +...+... ...+| +|++|++.++|
T Consensus 207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~----------------~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQE----------------LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSS----------------CCCCCTTCCEEECTTCC
T ss_pred CCCccCccChhhccCcccCCEeECCCCC-CcccCHHH----------------HHhhhccCCEEEccCCC
Confidence 99986654443 8889999999999997 44433221 33464 89999998765
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=6.3e-20 Score=174.15 Aligned_cols=250 Identities=16% Similarity=0.107 Sum_probs=185.7
Q ss_pred cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhh-------hhccCcE
Q 038150 175 TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC-------ELYNLEK 247 (488)
Q Consensus 175 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~-------~L~~L~~ 247 (488)
++..++|++|++.+|. + . +|..+... |++|++++|.+ ... .+|..+. ++++|++
T Consensus 39 ~~~~~~L~~l~l~~n~-l-~--~p~~~~~~--L~~L~L~~n~l------~~~-------~~~~~~~~~~~~~~~l~~L~~ 99 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDT-E-A--DLGQFTDI--IKSLSLKRLTV------RAA-------RIPSRILFGALRVLGISGLQE 99 (312)
T ss_dssp EEEEEECTTHHHHCCT-T-C--CCHHHHHH--HHHCCCCEEEE------EEE-------ECBHHHHHHHHHHHTTSCCCE
T ss_pred EccCCCceeEeecccc-c-c--cHHHHHHH--Hhhcccccccc------cCC-------CcCHHHHHHHHHhcCcCCccE
Confidence 3456889999999874 4 2 33333333 99999999983 222 4666665 7999999
Q ss_pred eecCCCCCcccCchhh--ccccccceeeccCCCCCCCCCCCCCCc-----ccccccCceeecCCCCCCCCcccCcccccC
Q 038150 248 LDISDCFNLKELPEGI--GKLINVKHLLNRGTNSLRYMPVGIGRL-----TGLRTLGEFHVSAGGGVDGRKACRLESLKN 320 (488)
Q Consensus 248 L~l~~~~~~~~lp~~l--~~L~~L~~L~l~~~~~~~~lp~~i~~L-----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 320 (488)
|++++|.....+|..+ +.+++|++|++++|.+... |..++.+ ++|++|++.+|.+.+ .....+..
T Consensus 100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~-------~~~~~~~~ 171 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN-------FSCEQVRV 171 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC-------CCTTTCCC
T ss_pred EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-------chHHHhcc
Confidence 9999988666888876 8999999999999995554 8777777 999999999998765 12245667
Q ss_pred CCcccccccccccCCCChhhhhHhhc--ccCCCCCceeecccCchhhhhhhccccchHHHh-hhCCCCCCCCEEEecccc
Q 038150 321 LEHLQVCGISRLGDVSDVGEAKRLEL--DKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL-EALRPPLNLKELEIEYYR 397 (488)
Q Consensus 321 L~~L~~L~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 397 (488)
+++|+.|+++...-... ...+..+ ..+++|+.|++++|.+... ..++ ..+..+++|+.|++++|.
T Consensus 172 l~~L~~L~Ls~N~l~~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGE--RGLISALCPLKFPTLQVLALRNAGMETP----------SGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CSSCCEEECCSCTTCHH--HHHHHHSCTTSCTTCCEEECTTSCCCCH----------HHHHHHHHHTTCCCSEEECTTSC
T ss_pred CCCCCEEECCCCCcCcc--hHHHHHHHhccCCCCCEEECCCCcCcch----------HHHHHHHHhcCCCCCEEECCCCc
Confidence 88888888865542111 1122333 7899999999999998632 2333 334577899999999999
Q ss_pred CCCCCc-hHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcc
Q 038150 398 GNTVFP-SWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPK 475 (488)
Q Consensus 398 ~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 475 (488)
+....| ..+..+++|++|++++|... .+|. +. ++|++|++++|. ++.+|. ...+|+
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~-l~~~p~------------------~~~l~~ 297 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR-LDRNPS------------------PDELPQ 297 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC-CCSCCC------------------TTTSCE
T ss_pred CCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC-CCCChh------------------HhhCCC
Confidence 887443 34556899999999999865 6776 55 899999999986 555543 336899
Q ss_pred cccccccccc
Q 038150 476 LKSLSIEVLR 485 (488)
Q Consensus 476 L~~L~l~~~p 485 (488)
|++|.+.+.+
T Consensus 298 L~~L~L~~N~ 307 (312)
T 1wwl_A 298 VGNLSLKGNP 307 (312)
T ss_dssp EEEEECTTCT
T ss_pred CCEEeccCCC
Confidence 9999998865
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=9.7e-20 Score=173.27 Aligned_cols=240 Identities=15% Similarity=0.091 Sum_probs=172.8
Q ss_pred ccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCC
Q 038150 176 LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255 (488)
Q Consensus 176 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~ 255 (488)
..+++|++|++++| .+.. ..+..|..+++|++|++++|.+ . ..+. ++.+++|++|++++|.
T Consensus 31 ~~~~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~l------~---------~~~~-~~~l~~L~~L~Ls~n~- 91 (317)
T 3o53_A 31 QSAWNVKELDLSGN-PLSQ-ISAADLAPFTKLELLNLSSNVL------Y---------ETLD-LESLSTLRTLDLNNNY- 91 (317)
T ss_dssp TTGGGCSEEECTTS-CCCC-CCHHHHTTCTTCCEEECTTSCC------E---------EEEE-ETTCTTCCEEECCSSE-
T ss_pred ccCCCCCEEECcCC-ccCc-CCHHHhhCCCcCCEEECCCCcC------C---------cchh-hhhcCCCCEEECcCCc-
Confidence 45678999999997 5655 5667789999999999999984 3 2332 7788999999999975
Q ss_pred cccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCC
Q 038150 256 LKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDV 335 (488)
Q Consensus 256 ~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~ 335 (488)
+..+| ..++|++|++++|.+.. ++. ..+++|++|++.+|.+.. . ....+..+++|+.|+++...-.
T Consensus 92 l~~l~----~~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~-----~--~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 92 VQELL----VGPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITM-----L--RDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp EEEEE----ECTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCCS-----G--GGBCTGGGSSEEEEECTTSCCC
T ss_pred ccccc----CCCCcCEEECCCCccCC-cCc--cccCCCCEEECCCCCCCC-----c--cchhhhccCCCCEEECCCCCCC
Confidence 55444 44899999999988543 332 236789999998887765 1 1223456777888777654321
Q ss_pred CChhhhhHhhc-ccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcE
Q 038150 336 SDVGEAKRLEL-DKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKS 414 (488)
Q Consensus 336 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 414 (488)
. ..+..+ ..+++|+.|++++|.+... .....+++|+.|++++|.+.. +|..+..+++|++
T Consensus 158 ~----~~~~~~~~~l~~L~~L~L~~N~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 218 (317)
T 3o53_A 158 T----VNFAELAASSDTLEHLNLQYNFIYDV--------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW 218 (317)
T ss_dssp E----EEGGGGGGGTTTCCEEECTTSCCCEE--------------ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSE
T ss_pred c----ccHHHHhhccCcCCEEECCCCcCccc--------------ccccccccCCEEECCCCcCCc-chhhhcccCcccE
Confidence 1 111223 4678999999999987432 233458899999999999988 7777889999999
Q ss_pred EeecCCCCCCCCCC-CCCCCCcCeeeecccccc-eeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150 415 LDLSSCENCEQLPP-LGKLQSLENLHIWRMESV-KRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 415 L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
|++++|... .+|. +..+++|+.|++++|+-. ..++.. .+.+|+|+.|.+.+++
T Consensus 219 L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~-----------------~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-----------------FSKNQRVQTVAKQTVK 273 (317)
T ss_dssp EECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHH-----------------HHTCHHHHHHHHHHHH
T ss_pred EECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHH-----------------HhccccceEEECCCch
Confidence 999999865 5665 888999999999998732 122211 3457788877777543
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=2.3e-18 Score=177.03 Aligned_cols=233 Identities=21% Similarity=0.184 Sum_probs=163.8
Q ss_pred ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150 156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL 235 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l 235 (488)
..++.+.+..+....+|. .+++|++|++++| .+.. +|. .+++|++|++++|. +. .+
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~------l~---------~l 116 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTS--LPV---LPPGLLELSIFSNP------LT---------HL 116 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSC--CCC---CCTTCCEEEECSCC------CC---------CC
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCc--CCC---CCCCCCEEECcCCc------CC---------CC
Confidence 678889998888888876 5788999999987 4553 443 77889999999988 54 34
Q ss_pred chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCc
Q 038150 236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL 315 (488)
Q Consensus 236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 315 (488)
|. .+.+|++|++++|. +..+|.. +++|++|++++|. ...+|.. +++|+.|++.+|.+.. .+
T Consensus 117 ~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l~~-----l~--- 177 (622)
T 3g06_A 117 PA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTS-----LP--- 177 (622)
T ss_dssp CC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSC-----CC---
T ss_pred CC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCCCCCC-----Cc---
Confidence 44 56788999999875 6777764 4889999999987 4455543 4677777777776654 22
Q ss_pred ccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEe
Q 038150 316 ESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEI 393 (488)
Q Consensus 316 ~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 393 (488)
..+++|+.|.++.. ..++. .+++|+.|++++|.+.. +|. .+++|+.|++
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~l~~----------~~~~L~~L~L~~N~l~~-------------l~~---~~~~L~~L~L 228 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLTS-------------LPA---LPSGLKELIV 228 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSS-------------CCC---CCTTCCEEEC
T ss_pred ---ccCCCCcEEECCCCCCCCCCC----------ccchhhEEECcCCcccc-------------cCC---CCCCCCEEEc
Confidence 33466666666433 22221 24678888888887632 222 2468888888
Q ss_pred ccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccC
Q 038150 394 EYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAF 473 (488)
Q Consensus 394 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (488)
++|.+.. +| ..+++|+.|++++|.+. .+|. .+++|+.|++++|. ++.+|.. .+.+
T Consensus 229 s~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~-L~~lp~~-----------------l~~l 283 (622)
T 3g06_A 229 SGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQ-LTRLPES-----------------LIHL 283 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC-CCSCCGG-----------------GGGS
T ss_pred cCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCC-CCcCCHH-----------------Hhhc
Confidence 8888876 77 45678888888888644 5665 56888888888875 6666543 3457
Q ss_pred cccccccccccc
Q 038150 474 PKLKSLSIEVLR 485 (488)
Q Consensus 474 p~L~~L~l~~~p 485 (488)
|+|+.|.+.+++
T Consensus 284 ~~L~~L~L~~N~ 295 (622)
T 3g06_A 284 SSETTVNLEGNP 295 (622)
T ss_dssp CTTCEEECCSCC
T ss_pred cccCEEEecCCC
Confidence 888888888765
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=8.6e-19 Score=183.07 Aligned_cols=133 Identities=21% Similarity=0.211 Sum_probs=93.8
Q ss_pred ccccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 154 LDEKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
.+..+++++++.+.+..++. .|.++++|++|++++| .+.. ..+..|.++++|++|+|++|. +..+|.
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~-i~~~~f~~L~~L~~L~Ls~N~------l~~l~~---- 117 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQT-IEDGAYQSLSHLSTLILTGNP------IQSLAL---- 117 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCE-ECTTTTTTCTTCCEEECTTCC------CCEECG----
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCC-cChhHhcCCCCCCEEEccCCc------CCCCCH----
Confidence 34678889888888877764 5788899999999987 5654 555668889999999999988 553322
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecC
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSA 303 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~ 303 (488)
..++++++|++|++++|. +..+|. .++++++|++|++++|.+.. .+|..++++++|++|++.+|.+
T Consensus 118 ----~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 118 ----GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp ----GGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ----HHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 345677777777777765 455544 46777777777777776432 3455667777777777666543
No 59
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=7.3e-20 Score=179.26 Aligned_cols=256 Identities=18% Similarity=0.119 Sum_probs=154.8
Q ss_pred CcCccccccccCcceecccccchhhhh---hHHHHHhcCCccceeecCCCcccccccCCcc----cccccCccCchhhhh
Q 038150 169 ASLPISTLRVKRMRTLLINDHSLLNAA---ILEELFRELTSLRALDFGGSYHSTRLLTPEV----PRNIEKLVLPETLCE 241 (488)
Q Consensus 169 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~---~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~l----p~~i~~l~lp~~i~~ 241 (488)
..++..+..+++|++|++++| .++.. .++..+..+++|++|+|++|. +..+ |..+. .+...+..
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~------~~~l~~~~~~~~~--~l~~~l~~ 92 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIF------TGRVKDEIPEALR--LLLQALLK 92 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCC------TTSCGGGSHHHHH--HHHHHHTT
T ss_pred HHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccc------cCccccchhHHHH--HHHHHHhh
Confidence 445555666778888888876 44431 133335577888888888765 3322 22111 12233467
Q ss_pred hccCcEeecCCCCCcc----cCchhhccccccceeeccCCCCCCC----CCCCCCCc---------ccccccCceeecCC
Q 038150 242 LYNLEKLDISDCFNLK----ELPEGIGKLINVKHLLNRGTNSLRY----MPVGIGRL---------TGLRTLGEFHVSAG 304 (488)
Q Consensus 242 L~~L~~L~l~~~~~~~----~lp~~l~~L~~L~~L~l~~~~~~~~----lp~~i~~L---------~~L~~L~l~~~~~~ 304 (488)
+++|++|++++|.... .+|..+..+++|++|++++|.+... ++..+..+ ++|++|++.+|.+.
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 7888888888876433 2666777788888888888764322 22223333 77888888777665
Q ss_pred CCCCCCcccCcccccCCCcccccccccccCCCChhhhhHh-hcccCCCCCceeecccCchhhhhhhccccchHHHhhhCC
Q 038150 305 GGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRL-ELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALR 383 (488)
Q Consensus 305 ~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (488)
... .+.....+..+++|+.|.+....-.......+.. .+..+++|+.|++++|.+.... ...++..+.
T Consensus 173 ~~~---~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--------~~~l~~~l~ 241 (386)
T 2ca6_A 173 NGS---MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--------SSALAIALK 241 (386)
T ss_dssp GGG---HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--------HHHHHHHGG
T ss_pred cHH---HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--------HHHHHHHHc
Confidence 210 1222234556667777777654321111112223 6677788888888888764321 145566777
Q ss_pred CCCCCCEEEeccccCCCC----CchHHHh--ccCCcEEeecCCCCCC----CCCC-C-CCCCCcCeeeecccc
Q 038150 384 PPLNLKELEIEYYRGNTV----FPSWMTS--LTNLKSLDLSSCENCE----QLPP-L-GKLQSLENLHIWRME 444 (488)
Q Consensus 384 ~~~~L~~L~l~~~~~~~~----lp~~~~~--l~~L~~L~l~~~~~~~----~~~~-l-~~l~~L~~L~l~~~~ 444 (488)
.+++|+.|+|++|.+... +|.++.. +++|++|+|++|.... .+|. + .++|+|++|++++|+
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 778888888888876652 3455533 7788888888887655 2554 4 557888888888776
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=4.5e-18 Score=159.22 Aligned_cols=219 Identities=17% Similarity=0.064 Sum_probs=162.9
Q ss_pred ceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCch
Q 038150 182 RTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPE 261 (488)
Q Consensus 182 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~ 261 (488)
+++++.++ .+. .+|. ...+.|++|++++|. +..+ .+..+..+++|++|++++|......|.
T Consensus 14 ~~~~c~~~-~l~--~ip~--~~~~~l~~L~l~~n~------i~~~--------~~~~~~~~~~L~~L~l~~n~l~~~~~~ 74 (285)
T 1ozn_A 14 VTTSCPQQ-GLQ--AVPV--GIPAASQRIFLHGNR------ISHV--------PAASFRACRNLTILWLHSNVLARIDAA 74 (285)
T ss_dssp CEEECCSS-CCS--SCCT--TCCTTCSEEECTTSC------CCEE--------CTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred eEEEcCcC-Ccc--cCCc--CCCCCceEEEeeCCc------CCcc--------CHHHcccCCCCCEEECCCCccceeCHh
Confidence 56777775 565 3554 346799999999998 5432 224578899999999999864444577
Q ss_pred hhccccccceeeccCCCCCCCC-CCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccc--cCCCCh
Q 038150 262 GIGKLINVKHLLNRGTNSLRYM-PVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL--GDVSDV 338 (488)
Q Consensus 262 ~l~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~--~~~~~~ 338 (488)
.+..+++|++|++++|.....+ |..++++++|++|++.+|.+... ....+.++++|+.|.+... ..++
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~-- 145 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-------GPGLFRGLAALQYLYLQDNALQALP-- 145 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-------CTTTTTTCTTCCEEECCSSCCCCCC--
T ss_pred hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE-------CHhHhhCCcCCCEEECCCCcccccC--
Confidence 8999999999999999734444 67799999999999998876641 1234566777777777543 3222
Q ss_pred hhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeec
Q 038150 339 GEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLS 418 (488)
Q Consensus 339 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 418 (488)
...+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+....|.++..+++|+.|+++
T Consensus 146 ----~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 146 ----DDTFRDLGNLTHLFLHGNRISSV------------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp ----TTTTTTCTTCCEEECCSSCCCEE------------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred ----HhHhccCCCccEEECCCCccccc------------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 13467788899999998887422 12357778899999999988887558888888999999999
Q ss_pred CCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 419 SCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 419 ~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
+|......+. +..+++|+.|++++|+
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCcCCcCCHHHcccCcccCEEeccCCC
Confidence 8876554434 7888999999998887
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2.4e-19 Score=180.42 Aligned_cols=214 Identities=16% Similarity=0.079 Sum_probs=151.8
Q ss_pred ccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc
Q 038150 178 VKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK 257 (488)
Q Consensus 178 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~ 257 (488)
+++|++|++++| .+.. ..|..|..+++|++|+|++|.+ . ..+. ++.+++|++|++++|. +.
T Consensus 33 ~~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~Ls~N~l------~---------~~~~-l~~l~~L~~L~Ls~N~-l~ 93 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQ-ISAADLAPFTKLELLNLSSNVL------Y---------ETLD-LESLSTLRTLDLNNNY-VQ 93 (487)
T ss_dssp GGGCCEEECCSS-CCCC-CCGGGGTTCTTCCEEECTTSCC------E---------EEEE-CTTCTTCCEEECCSSE-EE
T ss_pred CCCccEEEeeCC-cCCC-CCHHHHhCCCCCCEEEeeCCCC------C---------CCcc-cccCCCCCEEEecCCc-CC
Confidence 347888888887 5554 5556678888888888888884 2 2222 6778888888888865 55
Q ss_pred cCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCC
Q 038150 258 ELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSD 337 (488)
Q Consensus 258 ~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~ 337 (488)
.+| ..++|++|++++|.+....+ ..+++|++|++.+|.+.+. ....+.++++|+.|+++...-..
T Consensus 94 ~l~----~~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~- 158 (487)
T 3oja_A 94 ELL----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITML-------RDLDEGCRSRVQYLDLKLNEIDT- 158 (487)
T ss_dssp EEE----ECTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSG-------GGBCGGGGSSEEEEECTTSCCCE-
T ss_pred CCC----CCCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCC-------CchhhcCCCCCCEEECCCCCCCC-
Confidence 544 23788888888887443322 2457788888888776641 12234556677777665432211
Q ss_pred hhhhhHhhcc-cCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEe
Q 038150 338 VGEAKRLELD-KKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLD 416 (488)
Q Consensus 338 ~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 416 (488)
..+..+. .+++|+.|++++|.+.+. .....+++|+.|+|++|.+.. +|..+..+++|+.|+
T Consensus 159 ---~~~~~l~~~l~~L~~L~Ls~N~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 159 ---VNFAELAASSDTLEHLNLQYNFIYDV--------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (487)
T ss_dssp ---EEGGGGGGGTTTCCEEECTTSCCCEE--------------ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred ---cChHHHhhhCCcccEEecCCCccccc--------------cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEE
Confidence 1123333 678999999999987532 234468899999999999988 777788999999999
Q ss_pred ecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 417 LSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 417 l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
+++|.... +|. ++.+++|+.|++++|+
T Consensus 221 Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 221 LRNNKLVL-IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CTTSCCCE-ECTTCCCCTTCCEEECTTCC
T ss_pred ecCCcCcc-cchhhccCCCCCEEEcCCCC
Confidence 99998654 555 8889999999999987
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=9.8e-19 Score=166.30 Aligned_cols=238 Identities=15% Similarity=0.131 Sum_probs=177.1
Q ss_pred cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCccc
Q 038150 179 KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKE 258 (488)
Q Consensus 179 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~ 258 (488)
..++..++..+ .+.. .+...+..+++|++|+|++|.+ .. ..|..++.+++|++|++++|. +..
T Consensus 10 ~~l~i~~ls~~-~l~~-~~~~~~~~~~~L~~L~L~~n~l------~~--------~~~~~~~~l~~L~~L~Ls~n~-l~~ 72 (317)
T 3o53_A 10 NRYKIEKVTDS-SLKQ-ALASLRQSAWNVKELDLSGNPL------SQ--------ISAADLAPFTKLELLNLSSNV-LYE 72 (317)
T ss_dssp TEEEEESCCTT-THHH-HHHHHHTTGGGCSEEECTTSCC------CC--------CCHHHHTTCTTCCEEECTTSC-CEE
T ss_pred CceeEeecccc-chhh-hHHHHhccCCCCCEEECcCCcc------Cc--------CCHHHhhCCCcCCEEECCCCc-CCc
Confidence 34556666665 4554 5667777888999999999994 32 345789999999999999986 444
Q ss_pred CchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCCh
Q 038150 259 LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDV 338 (488)
Q Consensus 259 lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~ 338 (488)
.+. +..+++|++|++++|.+ ..+| ..++|++|++.+|.+.+ .+ ...+++|+.|.+....-..
T Consensus 73 ~~~-~~~l~~L~~L~Ls~n~l-~~l~----~~~~L~~L~l~~n~l~~-----~~-----~~~~~~L~~L~l~~N~l~~-- 134 (317)
T 3o53_A 73 TLD-LESLSTLRTLDLNNNYV-QELL----VGPSIETLHAANNNISR-----VS-----CSRGQGKKNIYLANNKITM-- 134 (317)
T ss_dssp EEE-ETTCTTCCEEECCSSEE-EEEE----ECTTCCEEECCSSCCSE-----EE-----ECCCSSCEEEECCSSCCCS--
T ss_pred chh-hhhcCCCCEEECcCCcc-cccc----CCCCcCEEECCCCccCC-----cC-----ccccCCCCEEECCCCCCCC--
Confidence 443 89999999999999984 3333 45899999999887665 11 2235678887775443211
Q ss_pred hhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhC-CCCCCCCEEEeccccCCCCCchHHHhccCCcEEee
Q 038150 339 GEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEAL-RPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDL 417 (488)
Q Consensus 339 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 417 (488)
.....+..+++|+.|++++|.+... .+..+ ..+++|+.|++++|.+.. +|... .+++|++|++
T Consensus 135 --~~~~~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-~l~~L~~L~L 198 (317)
T 3o53_A 135 --LRDLDEGCRSRVQYLDLKLNEIDTV------------NFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDL 198 (317)
T ss_dssp --GGGBCTGGGSSEEEEECTTSCCCEE------------EGGGGGGGTTTCCEEECTTSCCCE-EECCC-CCTTCCEEEC
T ss_pred --ccchhhhccCCCCEEECCCCCCCcc------------cHHHHhhccCcCCEEECCCCcCcc-ccccc-ccccCCEEEC
Confidence 1224567789999999999988532 23333 467899999999999887 55433 5899999999
Q ss_pred cCCCCCCCCCCCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150 418 SSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 418 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
++|......+.+..+++|+.|++++|. ++.+|.. .+.+++|+.|.+.+++
T Consensus 199 s~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~-----------------~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 199 SSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA-----------------LRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-----------------CCCCTTCCEEECTTCC
T ss_pred CCCcCCcchhhhcccCcccEEECcCCc-ccchhhH-----------------hhcCCCCCEEEccCCC
Confidence 999866544448889999999999986 7777654 3458899999999875
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.4e-17 Score=157.45 Aligned_cols=196 Identities=18% Similarity=0.168 Sum_probs=115.8
Q ss_pred cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150 177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL 256 (488)
Q Consensus 177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~ 256 (488)
++++|++|++.++ .+.. ++ .+..+++|++|++++|. +. .+|. +..+++|++|++++|. +
T Consensus 39 ~l~~L~~L~l~~~-~i~~--l~-~~~~l~~L~~L~L~~n~------i~---------~~~~-~~~l~~L~~L~L~~n~-l 97 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTT--IE-GVQYLNNLIGLELKDNQ------IT---------DLAP-LKNLTKITELELSGNP-L 97 (308)
T ss_dssp HHHTCCEEECTTS-CCCC--CT-TGGGCTTCCEEECCSSC------CC---------CCGG-GTTCCSCCEEECCSCC-C
T ss_pred HcCCcCEEEeeCC-CccC--ch-hhhccCCCCEEEccCCc------CC---------CChh-HccCCCCCEEEccCCc-C
Confidence 4556666666654 4442 33 25556666666666665 33 2333 5556666666666644 4
Q ss_pred ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCC
Q 038150 257 KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVS 336 (488)
Q Consensus 257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~ 336 (488)
..+| .+..+++|++|++++|.+ ..++. ++++++|++|++.+|.+.+ +
T Consensus 98 ~~~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~-----------------------------~- 144 (308)
T 1h6u_A 98 KNVS-AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITN-----------------------------I- 144 (308)
T ss_dssp SCCG-GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCC-----------------------------C-
T ss_pred CCch-hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccCc-----------------------------C-
Confidence 4443 455566666666666553 22332 5555666666555554332 0
Q ss_pred ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEe
Q 038150 337 DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLD 416 (488)
Q Consensus 337 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 416 (488)
..+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+.. ++. +..+++|++|+
T Consensus 145 -------~~l~~l~~L~~L~l~~n~l~~-------------~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 201 (308)
T 1h6u_A 145 -------SPLAGLTNLQYLSIGNAQVSD-------------LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVH 201 (308)
T ss_dssp -------GGGGGCTTCCEEECCSSCCCC-------------CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred -------ccccCCCCccEEEccCCcCCC-------------Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEE
Confidence 114556777777777776642 122 6677788888888887776 554 66778888888
Q ss_pred ecCCCCCCCCCCCCCCCCcCeeeecccccceeeCc
Q 038150 417 LSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGD 451 (488)
Q Consensus 417 l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 451 (488)
+++|... .++.+..+++|+.|++++|+ +...|.
T Consensus 202 L~~N~l~-~~~~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 202 LKNNQIS-DVSPLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CTTSCCC-BCGGGTTCTTCCEEEEEEEE-EECCCE
T ss_pred ccCCccC-ccccccCCCCCCEEEccCCe-eecCCe
Confidence 8887744 34457777888888887776 444443
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=2.4e-18 Score=173.15 Aligned_cols=223 Identities=14% Similarity=0.130 Sum_probs=167.3
Q ss_pred hHHHHHhcCC----ccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccce
Q 038150 196 ILEELFRELT----SLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKH 271 (488)
Q Consensus 196 ~~~~~~~~l~----~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~ 271 (488)
.+|..+..+. +|++|+|++|.+ .. ..|..++.+++|++|++++|. +...++ ++.+++|++
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l------~~--------~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~ 84 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPL------SQ--------ISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRT 84 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCC------CC--------CCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcC------CC--------CCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCE
Confidence 3455555544 899999999994 32 345688999999999999987 444443 999999999
Q ss_pred eeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCC
Q 038150 272 LLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKY 351 (488)
Q Consensus 272 L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 351 (488)
|++++|.+ ..+| ..++|++|++.+|.+.+ .+ ...+++|+.|.+....-.. ..+..+..+++
T Consensus 85 L~Ls~N~l-~~l~----~~~~L~~L~L~~N~l~~-----~~-----~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~ 145 (487)
T 3oja_A 85 LDLNNNYV-QELL----VGPSIETLHAANNNISR-----VS-----CSRGQGKKNIYLANNKITM----LRDLDEGCRSR 145 (487)
T ss_dssp EECCSSEE-EEEE----ECTTCCEEECCSSCCCC-----EE-----ECCCSSCEEEECCSSCCCS----GGGBCGGGGSS
T ss_pred EEecCCcC-CCCC----CCCCcCEEECcCCcCCC-----CC-----ccccCCCCEEECCCCCCCC----CCchhhcCCCC
Confidence 99999984 3344 34899999999998765 11 1245678887775443211 12356778999
Q ss_pred CCceeecccCchhhhhhhccccchHHHhhhCC-CCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCC
Q 038150 352 LSSLTLWFDKEEEEEGERRKNEDNQLLLEALR-PPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLG 430 (488)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~ 430 (488)
|+.|++++|.+.+. .|..+. .+++|+.|+|++|.+.. +|.. ..+++|+.|++++|......|.++
T Consensus 146 L~~L~Ls~N~l~~~------------~~~~l~~~l~~L~~L~Ls~N~l~~-~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~ 211 (487)
T 3oja_A 146 VQYLDLKLNEIDTV------------NFAELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLAFMGPEFQ 211 (487)
T ss_dssp EEEEECTTSCCCEE------------EGGGGGGGTTTCCEEECTTSCCCE-EECC-CCCTTCCEEECCSSCCCEECGGGG
T ss_pred CCEEECCCCCCCCc------------ChHHHhhhCCcccEEecCCCcccc-cccc-ccCCCCCEEECCCCCCCCCCHhHc
Confidence 99999999998632 344554 68899999999999887 5543 368999999999998766555588
Q ss_pred CCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150 431 KLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 431 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
.+++|+.|++++|. +..+|.. .+.+|+|+.|.+.+++
T Consensus 212 ~l~~L~~L~Ls~N~-l~~lp~~-----------------l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 212 SAAGVTWISLRNNK-LVLIEKA-----------------LRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGTTCSEEECTTSC-CCEECTT-----------------CCCCTTCCEEECTTCC
T ss_pred CCCCccEEEecCCc-Ccccchh-----------------hccCCCCCEEEcCCCC
Confidence 99999999999987 6677654 3457888888888765
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=9.9e-20 Score=182.75 Aligned_cols=243 Identities=16% Similarity=0.067 Sum_probs=125.0
Q ss_pred ccceeeEEEEecCC-----cCccccccccCcceecccccchhhhhhHHHHHhcCC----ccceeecCCCcccccccCCcc
Q 038150 156 EKVRHLMLIFSKAA-----SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELT----SLRALDFGGSYHSTRLLTPEV 226 (488)
Q Consensus 156 ~~vr~l~l~~~~~~-----~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~----~Lr~L~Ls~~~~~~~~~~~~l 226 (488)
..++.+++..+... .++..+..+++|++|++++| .+....+...+..++ +|++|++++|.+ ...
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i------~~~ 100 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL------TGA 100 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCC------BGG
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCC------CHH
Confidence 45667777766653 34455566677777777776 344323333344455 577777777763 210
Q ss_pred cccccCccCchhhhhhccCcEeecCCCCCcccCchhhc-----cccccceeeccCCCCCCC----CCCCCCCcccccccC
Q 038150 227 PRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIG-----KLINVKHLLNRGTNSLRY----MPVGIGRLTGLRTLG 297 (488)
Q Consensus 227 p~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~-----~L~~L~~L~l~~~~~~~~----lp~~i~~L~~L~~L~ 297 (488)
... .+|..+..+++|++|++++|.....-+..+. ..++|++|++++|.+... ++..+..+++|++|+
T Consensus 101 ~~~----~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 101 GCG----VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp GHH----HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHH----HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 000 2455666777777777777653222222222 244677777777764332 233445567777777
Q ss_pred ceeecCCCCCCCCcccCc-cccc-CCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccch
Q 038150 298 EFHVSAGGGVDGRKACRL-ESLK-NLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDN 375 (488)
Q Consensus 298 l~~~~~~~~~~~~~~~~~-~~l~-~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 375 (488)
+.+|.+.+.. ...+ ..+. ..++|+.|.+....-.......++..+..+++|+.|++++|.+.....
T Consensus 177 L~~n~i~~~~----~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~-------- 244 (461)
T 1z7x_W 177 VSNNDINEAG----VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM-------- 244 (461)
T ss_dssp CCSSBCHHHH----HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH--------
T ss_pred CcCCCcchHH----HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH--------
Confidence 7666543200 0000 1111 234566666655433233333345555666777777777766543210
Q ss_pred HHHh-hhCCCCCCCCEEEeccccCCCC----CchHHHhccCCcEEeecCCC
Q 038150 376 QLLL-EALRPPLNLKELEIEYYRGNTV----FPSWMTSLTNLKSLDLSSCE 421 (488)
Q Consensus 376 ~~~~-~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~ 421 (488)
..+. .....+++|+.|++++|.+... ++..+..+++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 1121 2223455666666666654431 34444455566666666554
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=6.2e-18 Score=168.54 Aligned_cols=240 Identities=16% Similarity=0.105 Sum_probs=130.6
Q ss_pred cccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCc-------------cceeecCCCcccccc
Q 038150 155 DEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTS-------------LRALDFGGSYHSTRL 221 (488)
Q Consensus 155 ~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~-------------Lr~L~Ls~~~~~~~~ 221 (488)
...++.+.+..+..+.+|..++++++|++|++++| .+.+ .+|..++++.+ +++|++++|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n-~~~~-~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~----- 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWS-EWER-NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG----- 82 (454)
T ss_dssp ------------------------CCHHHHHHHHH-HHHH-TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-----
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCC-cccc-cCCcccccchhcchhhhhhhhccCCCEEEecCCc-----
Confidence 45677888888888999999999999999999997 4554 55655666654 4888888888
Q ss_pred cCCcccc---cccCc--------cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCc
Q 038150 222 LTPEVPR---NIEKL--------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRL 290 (488)
Q Consensus 222 ~~~~lp~---~i~~l--------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L 290 (488)
...+|. .+..+ .+|.. +.+|++|++++|. +..+|.. .++|++|++++|.+. .+| .++++
T Consensus 83 -l~~lp~~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~-~lp-~~~~l 152 (454)
T 1jl5_A 83 -LSSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLE-KLP-ELQNS 152 (454)
T ss_dssp -CSCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCS-SCC-CCTTC
T ss_pred -cccCCCCcCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCC-CCc-ccCCC
Confidence 443433 22211 23321 2566666666653 3444321 157777777777643 466 47777
Q ss_pred ccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhc
Q 038150 291 TGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERR 370 (488)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 370 (488)
++|++|++.+|.+.+ .+.. ..+|+.|.+....- .. + ..+..+++|+.|++++|.+.+
T Consensus 153 ~~L~~L~l~~N~l~~-----lp~~------~~~L~~L~L~~n~l-~~----l-~~~~~l~~L~~L~l~~N~l~~------ 209 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-----LPDL------PPSLEFIAAGNNQL-EE----L-PELQNLPFLTAIYADNNSLKK------ 209 (454)
T ss_dssp TTCCEEECCSSCCSC-----CCCC------CTTCCEEECCSSCC-SS----C-CCCTTCTTCCEEECCSSCCSS------
T ss_pred CCCCEEECCCCcCcc-----cCCC------cccccEEECcCCcC-Cc----C-ccccCCCCCCEEECCCCcCCc------
Confidence 777777777776554 2221 12555555543221 11 1 135677788888888877632
Q ss_pred cccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeC
Q 038150 371 KNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVG 450 (488)
Q Consensus 371 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 450 (488)
+|. .+++|+.|++++|.+.. +|. ++.+++|++|++++|... .+|.. +++|++|++++|. +..+|
T Consensus 210 -------l~~---~~~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~-~l~~~--~~~L~~L~l~~N~-l~~l~ 273 (454)
T 1jl5_A 210 -------LPD---LPLSLESIVAGNNILEE-LPE-LQNLPFLTTIYADNNLLK-TLPDL--PPSLEALNVRDNY-LTDLP 273 (454)
T ss_dssp -------CCC---CCTTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCS-SCCSC--CTTCCEEECCSSC-CSCCC
T ss_pred -------CCC---CcCcccEEECcCCcCCc-ccc-cCCCCCCCEEECCCCcCC-ccccc--ccccCEEECCCCc-ccccC
Confidence 222 12478888888887775 774 677888888888887644 35542 3677777777765 44444
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=3.5e-18 Score=159.19 Aligned_cols=119 Identities=17% Similarity=0.108 Sum_probs=81.0
Q ss_pred CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEe
Q 038150 169 ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKL 248 (488)
Q Consensus 169 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L 248 (488)
..+|..+ .++|++|++++| .+.. ..+..|.++++|++|++++|. +..+ .+..++++++|++|
T Consensus 20 ~~ip~~l--~~~l~~L~ls~n-~l~~-~~~~~~~~l~~L~~L~l~~n~------l~~~--------~~~~~~~l~~L~~L 81 (276)
T 2z62_A 20 YKIPDNL--PFSTKNLDLSFN-PLRH-LGSYSFFSFPELQVLDLSRCE------IQTI--------EDGAYQSLSHLSTL 81 (276)
T ss_dssp SSCCSSS--CTTCCEEECTTC-CCCE-ECTTTTTTCTTCSEEECTTCC------CCEE--------CTTTTTTCTTCCEE
T ss_pred cccCCCC--CCCccEEECCCC-cccc-cCHhHhccccCCcEEECCCCc------CCcc--------CHHHccCCcCCCEE
Confidence 4455443 256888888887 4544 444457788888888888887 4422 22356778888888
Q ss_pred ecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150 249 DISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 249 ~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~ 305 (488)
++++|......|..+.++++|++|++++|......+..++++++|++|++.+|.+..
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 888876444444667888888888888887544434467888888888887776543
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=3.9e-17 Score=151.68 Aligned_cols=202 Identities=17% Similarity=0.132 Sum_probs=116.5
Q ss_pred HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL 280 (488)
Q Consensus 201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~ 280 (488)
+..+++|+.|+++++. +. . +..++.+++|++|++++|. +..++ .++.+++|++|++++|.+.
T Consensus 37 ~~~l~~L~~L~l~~~~------i~---------~-~~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD------IK---------S-VQGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHTTCCEEECTTSC------CC---------C-CTTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCC
T ss_pred cccccceeeeeeCCCC------cc---------c-ccccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccC
Confidence 3456667777777666 32 1 2245666777777777754 44443 5666777777777776644
Q ss_pred CCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeec
Q 038150 281 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLW 358 (488)
Q Consensus 281 ~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~ 358 (488)
...+..++++++|++|++.+|.+.+ .+ ...+..+++|+.|.+... ..++ ...+..+++|+.|+++
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~-----~~--~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQS-----LP--DGVFDKLTNLTYLNLAHNQLQSLP------KGVFDKLTNLTELDLS 165 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCC-----CC--TTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECC
T ss_pred ccChhHhcCCcCCCEEECCCCcCCc-----cC--HHHhccCCCCCEEECCCCccCccC------HHHhccCccCCEEECC
Confidence 3333345667777777766665443 11 111333444444444322 1111 1334566777777777
Q ss_pred ccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCee
Q 038150 359 FDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENL 438 (488)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 438 (488)
+|.+... .+..+..+++|+.|++++|.+....|..++.+++|++|++++|+.. +.+|+|+.|
T Consensus 166 ~n~l~~~------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l 227 (272)
T 3rfs_A 166 YNQLQSL------------PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYL 227 (272)
T ss_dssp SSCCCCC------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHH
T ss_pred CCCcCcc------------CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHH
Confidence 7776421 2234566777778887777777634445667777777777777533 345667777
Q ss_pred eecccccceeeCc
Q 038150 439 HIWRMESVKRVGD 451 (488)
Q Consensus 439 ~l~~~~~l~~~~~ 451 (488)
.++.+.-...+|.
T Consensus 228 ~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 228 SEWINKHSGVVRN 240 (272)
T ss_dssp HHHHHHTGGGBBC
T ss_pred HHHHHhCCCcccC
Confidence 7766654444443
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=2.4e-19 Score=179.88 Aligned_cols=265 Identities=18% Similarity=0.071 Sum_probs=152.6
Q ss_pred cceeeEEEEecCC-----cCccccccccCcceecccccchhhhhhHHHHHh-----cCCccceeecCCCcccccccCCcc
Q 038150 157 KVRHLMLIFSKAA-----SLPISTLRVKRMRTLLINDHSLLNAAILEELFR-----ELTSLRALDFGGSYHSTRLLTPEV 226 (488)
Q Consensus 157 ~vr~l~l~~~~~~-----~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-----~l~~Lr~L~Ls~~~~~~~~~~~~l 226 (488)
.++++++..+... .++..+..+++|++|++++| .+.. ..+..+. ..++|++|++++|.+ ....
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l-----~~~~ 158 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGD-AGLQLLCEGLLDPQCRLEKLQLEYCSL-----SAAS 158 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHH-HHHHHHHHHHTSTTCCCCEEECTTSCC-----BGGG
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCch-HHHHHHHHHHhcCCCcceEEECCCCCC-----CHHH
Confidence 5778888777664 34666778888888888887 3543 2222222 245788888888874 2211
Q ss_pred cccccCccCchhhhhhccCcEeecCCCCCcccCchhhc-----cccccceeeccCCCCCCC----CCCCCCCcccccccC
Q 038150 227 PRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIG-----KLINVKHLLNRGTNSLRY----MPVGIGRLTGLRTLG 297 (488)
Q Consensus 227 p~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~-----~L~~L~~L~l~~~~~~~~----lp~~i~~L~~L~~L~ 297 (488)
+. .++..+..+++|++|++++|.....-+..+. .+++|++|++++|.+... ++..+..+++|++|+
T Consensus 159 ~~-----~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 159 CE-----PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp HH-----HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred HH-----HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 11 3456677778888888888763322222232 255888888888874432 455566778888888
Q ss_pred ceeecCCCCCCCCcccCccc-ccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchH
Q 038150 298 EFHVSAGGGVDGRKACRLES-LKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQ 376 (488)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~-l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 376 (488)
+.+|.+.+.. ....... ...+++|+.|.+....-.......++..+..+++|+.|++++|.+..... .
T Consensus 234 Ls~n~l~~~~---~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--------~ 302 (461)
T 1z7x_W 234 LGSNKLGDVG---MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA--------R 302 (461)
T ss_dssp CCSSBCHHHH---HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH--------H
T ss_pred ccCCcCChHH---HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH--------H
Confidence 8777544300 0000011 12466777777765532222223355566677888888888887653311 2
Q ss_pred HHhhhCC-CCCCCCEEEeccccCCCC----CchHHHhccCCcEEeecCCCCCCCCCC-C----C-CCCCcCeeeecccc
Q 038150 377 LLLEALR-PPLNLKELEIEYYRGNTV----FPSWMTSLTNLKSLDLSSCENCEQLPP-L----G-KLQSLENLHIWRME 444 (488)
Q Consensus 377 ~~~~~~~-~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~~~~~~-l----~-~l~~L~~L~l~~~~ 444 (488)
.+...+. +.++|+.|++++|.+... +|.++..+++|++|++++|......+. + . ..++|++|++++|.
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 2333322 234677777777665542 345555666777777766653322111 1 1 14566666666664
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=8.1e-17 Score=149.37 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=68.0
Q ss_pred hcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCC
Q 038150 345 ELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCE 424 (488)
Q Consensus 345 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 424 (488)
.+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+....+..+..+++|++|++++|....
T Consensus 128 ~~~~l~~L~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYNELQSL------------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp TTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred HhCcCcCCCEEECCCCcCCcc------------CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 456778899999999987422 12347788999999999998887334457788999999999997655
Q ss_pred CCCC-CCCCCCcCeeeecccc
Q 038150 425 QLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 425 ~~~~-l~~l~~L~~L~l~~~~ 444 (488)
..+. +..+++|+.|++++|+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred CCHHHhccccCCCEEEecCCC
Confidence 4443 7888999999998887
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=2.7e-17 Score=153.19 Aligned_cols=203 Identities=16% Similarity=0.076 Sum_probs=137.5
Q ss_pred CccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCC
Q 038150 205 TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP 284 (488)
Q Consensus 205 ~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp 284 (488)
+.|++|++++|. +..+ .+..++++++|++|++++|......+..+.++++|++|++++|.+....+
T Consensus 28 ~~l~~L~ls~n~------l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 28 FSTKNLDLSFNP------LRHL--------GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TTCCEEECTTCC------CCEE--------CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCccEEECCCCc------cccc--------CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 479999999998 4422 22367889999999999986433344578999999999999998655555
Q ss_pred CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchh
Q 038150 285 VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEE 364 (488)
Q Consensus 285 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 364 (488)
..++++++|++|++.+|.... .+ ...+..+++|+.|.+....-... .++..+..+++|+.|++++|.+..
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~-----~~--~~~~~~l~~L~~L~l~~n~l~~~---~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLAS-----LE--NFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCC-----ST--TCCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred hhhcCCccccEEECCCCCccc-----cC--chhcccCCCCCEEECcCCcccee---cCchhhccCCCCCEEECCCCCCCc
Confidence 778999999999998887654 11 11355667777776654321110 022456777888888888887653
Q ss_pred hhhhhccccchHHHhhhCCCCCCCC----EEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeee
Q 038150 365 EEGERRKNEDNQLLLEALRPPLNLK----ELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLH 439 (488)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~ 439 (488)
.. +..+..+++|+ .|++++|.+.. +|.......+|++|++++|......+. ++.+++|+.|+
T Consensus 164 ~~------------~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 164 IY------------CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp EC------------GGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred CC------------HHHhhhhhhccccceeeecCCCcccc-cCccccCCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence 21 12232333333 78888887776 555444555788888888875543333 67788888888
Q ss_pred ecccc
Q 038150 440 IWRME 444 (488)
Q Consensus 440 l~~~~ 444 (488)
+++|+
T Consensus 231 l~~N~ 235 (276)
T 2z62_A 231 LHTNP 235 (276)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 88776
No 72
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.71 E-value=3.6e-18 Score=134.20 Aligned_cols=64 Identities=30% Similarity=0.464 Sum_probs=59.9
Q ss_pred CcchhcHHHHHHHHHHHHHHHHHHHHHHhhh--ccCcHHHHHHHHHHHHhhhchHHHHHHHHHhhh
Q 038150 1 VKLVVGVEKEVKSLTSHLQAIQAVLDDAEEK--QVKDKAVRHWLGRLKYASYDIEDVLDEWITGRR 64 (488)
Q Consensus 1 ~~l~~~v~~~i~~l~~eL~~~~~~L~~a~~~--~~~~~~v~~w~~~lr~~~yd~eD~id~~~~~~~ 64 (488)
|++++||+++|++|++||++|++||.||+++ +..+++++.|++++|+++||+||++|+|.+++.
T Consensus 18 ~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 18 FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688999999999999999999999999998 668999999999999999999999999998663
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=156.76 Aligned_cols=231 Identities=15% Similarity=0.070 Sum_probs=161.3
Q ss_pred cCcceecccccchhhhhhHHHH--HhcCCccceeecCCCcccccccCCcccccccCccCchhh--hhhccCcEeecCCCC
Q 038150 179 KRMRTLLINDHSLLNAAILEEL--FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETL--CELYNLEKLDISDCF 254 (488)
Q Consensus 179 ~~Lr~L~l~~~~~~~~~~~~~~--~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i--~~L~~L~~L~l~~~~ 254 (488)
..++.|.+.++ .+....+... +..+++|++|++++|.+ .+ ..|..+ +.+++|++|++++|.
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-----~~---------~~~~~~~~~~~~~L~~L~Ls~n~ 128 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKI-----TG---------TMPPLPLEATGLALSSLRLRNVS 128 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCC-----BS---------CCCCCSSSCCCBCCSSCEEESCC
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEe-----cc---------chhhhhhhccCCCCCEEEeeccc
Confidence 34566666665 2222122221 23456799999999985 44 444555 788999999999987
Q ss_pred CcccCc----hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccc
Q 038150 255 NLKELP----EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS 330 (488)
Q Consensus 255 ~~~~lp----~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 330 (488)
.....| ..+..+++|++|++++|.+....|..++++++|++|++++|...+.. .......+..+++|+.|.++
T Consensus 129 i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 129 WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER---GLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH---HHHTTSCTTSSCCCCSCBCC
T ss_pred ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch---hhhHHHhhhcCCCCCEEECC
Confidence 554443 34567899999999999866655677899999999999988754300 00001123567788888776
Q ss_pred cccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCC---CCCCEEEeccccCCCCCchHHH
Q 038150 331 RLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPP---LNLKELEIEYYRGNTVFPSWMT 407 (488)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~lp~~~~ 407 (488)
...- ..........+..+++|+.|++++|.+.. ..|..+..+ ++|+.|++++|.+.. +|..+.
T Consensus 206 ~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~------------~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~ 271 (310)
T 4glp_A 206 NTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRA------------TVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP 271 (310)
T ss_dssp SSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCC------------CCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC
T ss_pred CCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCc------------cchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc
Confidence 5432 22222222235788999999999999853 224445554 799999999999996 888763
Q ss_pred hccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150 408 SLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 408 ~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 444 (488)
++|++|++++|... .+|.+..+++|+.|++++|+
T Consensus 272 --~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 272 --AKLRVLDLSSNRLN-RAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp --SCCSCEECCSCCCC-SCCCTTSCCCCSCEECSSTT
T ss_pred --CCCCEEECCCCcCC-CCchhhhCCCccEEECcCCC
Confidence 89999999999855 45667888999999999987
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=3.4e-17 Score=153.35 Aligned_cols=199 Identities=17% Similarity=0.103 Sum_probs=136.9
Q ss_pred cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCC
Q 038150 175 TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCF 254 (488)
Q Consensus 175 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~ 254 (488)
+.++++++++++.++ .+. .+|..+ .+.+++|+|++|. +.. ..|..+..+++|++|++++|.
T Consensus 6 ~~~l~~l~~l~~~~~-~l~--~ip~~~--~~~l~~L~L~~N~------l~~--------~~~~~~~~l~~L~~L~L~~n~ 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLT--ALPPDL--PKDTTILHLSENL------LYT--------FSLATLMPYTRLTQLNLDRAE 66 (290)
T ss_dssp EECSTTCCEEECTTS-CCS--SCCSCC--CTTCCEEECTTSC------CSE--------EEGGGGTTCTTCCEEECTTSC
T ss_pred ccccCCccEEECCCC-CCC--cCCCCC--CCCCCEEEcCCCc------CCc--------cCHHHhhcCCCCCEEECCCCc
Confidence 445667777777775 555 344322 3567777777777 332 224556677777777777754
Q ss_pred CcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccC
Q 038150 255 NLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGD 334 (488)
Q Consensus 255 ~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~ 334 (488)
+..+|.. +.+++|++|++++|. ...+|..+..+++|++|++.+|.+..
T Consensus 67 -l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~----------------------------- 114 (290)
T 1p9a_G 67 -LTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTS----------------------------- 114 (290)
T ss_dssp -CCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCC-----------------------------
T ss_pred -cCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcc-----------------------------
Confidence 5555543 667777777777776 44666667777777777776665433
Q ss_pred CCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCch-HHHhccCCc
Q 038150 335 VSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS-WMTSLTNLK 413 (488)
Q Consensus 335 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~ 413 (488)
++ +..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.. +|. .+..+++|+
T Consensus 115 l~------~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 115 LP------LGALRGLGELQELYLKGNELKTL------------PPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLD 175 (290)
T ss_dssp CC------SSTTTTCTTCCEEECTTSCCCCC------------CTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCC
T ss_pred cC------HHHHcCCCCCCEEECCCCCCCcc------------ChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCC
Confidence 11 13456678899999999987422 23446778899999999999887 654 456789999
Q ss_pred EEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 414 SLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 414 ~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
+|++++|... .+|. +..+++|+.|.+++|+
T Consensus 176 ~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 9999999855 5665 7778899999998877
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1.9e-18 Score=165.84 Aligned_cols=223 Identities=13% Similarity=0.078 Sum_probs=125.9
Q ss_pred ceeeEEEEecCCcCccccccc--cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150 158 VRHLMLIFSKAASLPISTLRV--KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL 235 (488)
Q Consensus 158 vr~l~l~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l 235 (488)
++++++..+... +..+..+ +++++|++.++ .+.. ..+. +..+++|++|++++|.+ ... .+
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~-~~~~-~~~~~~L~~L~L~~~~l-----~~~--------~~ 110 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQ-PLAE-HFSPFRVQHMDLSNSVI-----EVS--------TL 110 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECS-CCCS-CCCCBCCCEEECTTCEE-----CHH--------HH
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCc-cccc-cchh-hccCCCCCEEEccCCCc-----CHH--------HH
Confidence 445555433322 2334444 67777777776 3443 3333 45677777777777763 210 25
Q ss_pred chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC--CCCCCCCCcccccccCceee-cCCCCCCCCcc
Q 038150 236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR--YMPVGIGRLTGLRTLGEFHV-SAGGGVDGRKA 312 (488)
Q Consensus 236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~l~~~-~~~~~~~~~~~ 312 (488)
|..+..+++|++|++++|......|..++.+++|++|++++|.... .++..++++++|++|++.+| .+.+ .
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~------~ 184 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE------K 184 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH------H
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh------H
Confidence 5666777777777777776444566677777777777777773222 24444666777777777766 4432 1
Q ss_pred cCcccccCCC-ccccccccccc-CCCChhhhhHhhcccCCCCCceeecccC-chhhhhhhccccchHHHhhhCCCCCCCC
Q 038150 313 CRLESLKNLE-HLQVCGISRLG-DVSDVGEAKRLELDKKKYLSSLTLWFDK-EEEEEGERRKNEDNQLLLEALRPPLNLK 389 (488)
Q Consensus 313 ~~~~~l~~L~-~L~~L~~~~~~-~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 389 (488)
.....+..++ +|+.|.+..+. .+. ...++..+..+++|+.|++++|. ++ ...+..+..+++|+
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~l~------------~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQ--KSDLSTLVRRCPNLVHLDLSDSVMLK------------NDCFQEFFQLNYLQ 250 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSC--HHHHHHHHHHCTTCSEEECTTCTTCC------------GGGGGGGGGCTTCC
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCC--HHHHHHHHhhCCCCCEEeCCCCCcCC------------HHHHHHHhCCCCCC
Confidence 1122344455 66666665443 222 12334455566667777776665 32 22334555566677
Q ss_pred EEEeccccCCCCCch---HHHhccCCcEEeecCC
Q 038150 390 ELEIEYYRGNTVFPS---WMTSLTNLKSLDLSSC 420 (488)
Q Consensus 390 ~L~l~~~~~~~~lp~---~~~~l~~L~~L~l~~~ 420 (488)
.|++++|... .+. .++.+++|++|++++|
T Consensus 251 ~L~l~~~~~~--~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 251 HLSLSRCYDI--IPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTC--CGGGGGGGGGCTTCCEEECTTS
T ss_pred EeeCCCCCCC--CHHHHHHHhcCCCCCEEeccCc
Confidence 7777666421 222 3556667777777666
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=6.3e-17 Score=161.24 Aligned_cols=216 Identities=19% Similarity=0.169 Sum_probs=121.3
Q ss_pred cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc-----------cCchhhhhhccCcE
Q 038150 179 KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL-----------VLPETLCELYNLEK 247 (488)
Q Consensus 179 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l-----------~lp~~i~~L~~L~~ 247 (488)
++|++|++.+| .+.. +|. +.++++|++|++++|. +..+|..+.++ .+| .++++++|++
T Consensus 131 ~~L~~L~L~~n-~l~~--lp~-~~~l~~L~~L~l~~N~------l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEK--LPE-LQNSSFLKIIDVDNNS------LKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSC------CSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCCEEECcCC-CCCC--Ccc-cCCCCCCCEEECCCCc------CcccCCCcccccEEECcCCcCCcCc-cccCCCCCCE
Confidence 46666666665 3432 332 6666667777777666 33344433322 444 4667777777
Q ss_pred eecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccc
Q 038150 248 LDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVC 327 (488)
Q Consensus 248 L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 327 (488)
|++++|. +..+|... .+|++|++++|.+ ..+| .++++++|++|++.+|.+.+ .+.. +++|+.|
T Consensus 200 L~l~~N~-l~~l~~~~---~~L~~L~l~~n~l-~~lp-~~~~l~~L~~L~l~~N~l~~-----l~~~------~~~L~~L 262 (454)
T 1jl5_A 200 IYADNNS-LKKLPDLP---LSLESIVAGNNIL-EELP-ELQNLPFLTTIYADNNLLKT-----LPDL------PPSLEAL 262 (454)
T ss_dssp EECCSSC-CSSCCCCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCSS-----CCSC------CTTCCEE
T ss_pred EECCCCc-CCcCCCCc---CcccEEECcCCcC-Cccc-ccCCCCCCCEEECCCCcCCc-----cccc------ccccCEE
Confidence 7777765 44455322 4677777777763 3566 37777888888877776554 1211 1344444
Q ss_pred cccc--ccCCCChhhhhHhhcccCCCCCceeecccCchhhh--hh------hccccchHHHhhhCCCC-CCCCEEEeccc
Q 038150 328 GISR--LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEE--GE------RRKNEDNQLLLEALRPP-LNLKELEIEYY 396 (488)
Q Consensus 328 ~~~~--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 396 (488)
.+.. +.+++. ..++|+.|++++|.+.+.. +. ...+.. ..+... ++|+.|++++|
T Consensus 263 ~l~~N~l~~l~~----------~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l-----~~i~~~~~~L~~L~Ls~N 327 (454)
T 1jl5_A 263 NVRDNYLTDLPE----------LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI-----RSLCDLPPSLEELNVSNN 327 (454)
T ss_dssp ECCSSCCSCCCC----------CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC-----SEECCCCTTCCEEECCSS
T ss_pred ECCCCcccccCc----------ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC-----CcccCCcCcCCEEECCCC
Confidence 4422 222211 1244555555555443210 00 000000 011122 47888888888
Q ss_pred cCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150 397 RGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 397 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 444 (488)
.+.+ +|.. +++|+.|++++|... .+|. .+++|++|++++|.
T Consensus 328 ~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~--~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 328 KLIE-LPAL---PPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC
T ss_pred cccc-cccc---CCcCCEEECCCCccc-cccc--hhhhccEEECCCCC
Confidence 7776 7664 578888888888754 5665 46888888888876
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=6.1e-18 Score=162.33 Aligned_cols=226 Identities=16% Similarity=0.134 Sum_probs=160.5
Q ss_pred cCcceecccccchhhhhhHHHHHhcC--CccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150 179 KRMRTLLINDHSLLNAAILEELFREL--TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL 256 (488)
Q Consensus 179 ~~Lr~L~l~~~~~~~~~~~~~~~~~l--~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~ 256 (488)
..++.+++.++ .+. +..+..+ +.+++|+++++.+ . ..+..+..+++|++|++++|...
T Consensus 47 ~~~~~l~l~~~-~~~----~~~~~~~~~~~l~~L~l~~n~l------~---------~~~~~~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 47 SLWQTLDLTGK-NLH----PDVTGRLLSQGVIAFRCPRSFM------D---------QPLAEHFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp TTSSEEECTTC-BCC----HHHHHHHHHTTCSEEECTTCEE------C---------SCCCSCCCCBCCCEEECTTCEEC
T ss_pred hhheeeccccc-cCC----HHHHHhhhhccceEEEcCCccc------c---------ccchhhccCCCCCEEEccCCCcC
Confidence 34788888886 332 2345555 7899999999884 3 22333557889999999998743
Q ss_pred cc-CchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeec-CCCCCCCCcccCcccccCCCcccccccccccC
Q 038150 257 KE-LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS-AGGGVDGRKACRLESLKNLEHLQVCGISRLGD 334 (488)
Q Consensus 257 ~~-lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~ 334 (488)
.. +|..+..+++|++|++++|......|..++++++|++|++.+|. +.+ ......+.++++|+.|.+..+..
T Consensus 107 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~------~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE------FALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH------HHHHHHHHHCTTCCEEECCCCTT
T ss_pred HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH------HHHHHHHhcCCCCCEEcCCCCCC
Confidence 33 77788899999999999987655666778889999999998873 332 11223356677888888876644
Q ss_pred CCChhhhhHhhcccCC-CCCceeecccC--chhhhhhhccccchHHHhhhCCCCCCCCEEEecccc-CCCCCchHHHhcc
Q 038150 335 VSDVGEAKRLELDKKK-YLSSLTLWFDK--EEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR-GNTVFPSWMTSLT 410 (488)
Q Consensus 335 ~~~~~~~~~~~l~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~lp~~~~~l~ 410 (488)
+.+ ..+...+..++ +|+.|++++|. ++ ...++..+..+++|+.|++++|. +....+..+..++
T Consensus 181 l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~-----------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 181 FTE--KHVQVAVAHVSETITQLNLSGYRKNLQ-----------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp CCH--HHHHHHHHHSCTTCCEEECCSCGGGSC-----------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred cCh--HHHHHHHHhcccCCCEEEeCCCcccCC-----------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 432 22455677788 99999998884 32 14455666678899999999988 4444677788889
Q ss_pred CCcEEeecCCCCCCC--CCCCCCCCCcCeeeeccc
Q 038150 411 NLKSLDLSSCENCEQ--LPPLGKLQSLENLHIWRM 443 (488)
Q Consensus 411 ~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~ 443 (488)
+|++|++++|..... +..++.+++|++|++++|
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999999998863332 223677899999999888
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=3.4e-17 Score=152.02 Aligned_cols=73 Identities=11% Similarity=0.025 Sum_probs=57.1
Q ss_pred hhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCC
Q 038150 344 LELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENC 423 (488)
Q Consensus 344 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 423 (488)
..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.. .+++|+.|+++.|...
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSV------------PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 235 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTG
T ss_pred HHhcCCccCCEEECCCCcCCcc------------CHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCC
Confidence 3456789999999999988532 23557889999999999998764 4568899999988888
Q ss_pred CCCCC-CCCCCCc
Q 038150 424 EQLPP-LGKLQSL 435 (488)
Q Consensus 424 ~~~~~-l~~l~~L 435 (488)
+.+|. ++.++..
T Consensus 236 g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 236 GVVRNSAGSVAPD 248 (272)
T ss_dssp GGBBCTTSCBCGG
T ss_pred CcccCcccccCCC
Confidence 88886 7766554
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=4e-18 Score=166.86 Aligned_cols=270 Identities=13% Similarity=0.081 Sum_probs=187.3
Q ss_pred ccccceeeEEEEecCCc-----CccccccccCcceeccccc--chhhh------hhHHHHHhcCCccceeecCCCccccc
Q 038150 154 LDEKVRHLMLIFSKAAS-----LPISTLRVKRMRTLLINDH--SLLNA------AILEELFRELTSLRALDFGGSYHSTR 220 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~-----~~~~~~~~~~Lr~L~l~~~--~~~~~------~~~~~~~~~l~~Lr~L~Ls~~~~~~~ 220 (488)
....+++++++.+.... ++..+..+++|++|++++| ..+.. ..+...+..+++|++|+|++|.+
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--- 106 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF--- 106 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC---
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC---
Confidence 34567888888776633 3344668999999999986 22222 12334457899999999999984
Q ss_pred ccCCcccccccCccCchhhhhhccCcEeecCCCCCcc----cCchhhccc---------cccceeeccCCCCC-CCCC--
Q 038150 221 LLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK----ELPEGIGKL---------INVKHLLNRGTNSL-RYMP-- 284 (488)
Q Consensus 221 ~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~----~lp~~l~~L---------~~L~~L~l~~~~~~-~~lp-- 284 (488)
...-.. .+|..+..+++|++|++++|.... .++..+..+ ++|++|++++|.+. ..+|
T Consensus 107 --~~~~~~-----~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 107 --GPTAQE-----PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp --CTTTHH-----HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred --CHHHHH-----HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 221000 267788999999999999987432 234445555 89999999999854 3344
Q ss_pred -CCCCCcccccccCceeecCCCCCCCCcccCcc-cccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCc
Q 038150 285 -VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLE-SLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKE 362 (488)
Q Consensus 285 -~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 362 (488)
..+.++++|++|++.+|.+.... ....+. .+..+++|+.|.++...-.......++..+..+++|+.|++++|.+
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g---~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEG---IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHH---HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HHHHHhCCCcCEEECcCCCCCHhH---HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 35678889999999988765200 111223 5667888888888765421111245667888999999999999998
Q ss_pred hhhhhhhccccchHHHhhhC--CCCCCCCEEEeccccCCC----CCchHH-HhccCCcEEeecCCCCCCCCC--C--CCC
Q 038150 363 EEEEGERRKNEDNQLLLEAL--RPPLNLKELEIEYYRGNT----VFPSWM-TSLTNLKSLDLSSCENCEQLP--P--LGK 431 (488)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~----~lp~~~-~~l~~L~~L~l~~~~~~~~~~--~--l~~ 431 (488)
..... ..++..+ +.+++|+.|+|++|.+.. .+|..+ ..+++|++|++++|......+ . ...
T Consensus 257 ~~~~~--------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 328 (386)
T 2ca6_A 257 SARGA--------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 328 (386)
T ss_dssp CHHHH--------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHH
T ss_pred chhhH--------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHH
Confidence 64421 4466776 458999999999998876 477777 568999999999999776553 1 223
Q ss_pred CCCcCeeeecccc
Q 038150 432 LQSLENLHIWRME 444 (488)
Q Consensus 432 l~~L~~L~l~~~~ 444 (488)
+++++.+.+....
T Consensus 329 l~~~~~~~l~~~d 341 (386)
T 2ca6_A 329 FSTRGRGELDELD 341 (386)
T ss_dssp HHHHTCCEECCCC
T ss_pred hhhcCcchhhhcc
Confidence 5666666665443
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=1e-16 Score=151.56 Aligned_cols=192 Identities=19% Similarity=0.229 Sum_probs=136.4
Q ss_pred HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL 280 (488)
Q Consensus 201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~ 280 (488)
+..+++|++|++++|. +. .+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.+
T Consensus 37 ~~~l~~L~~L~l~~~~------i~---------~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l- 97 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG------VT---------TIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL- 97 (308)
T ss_dssp HHHHHTCCEEECTTSC------CC---------CCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC-
T ss_pred HHHcCCcCEEEeeCCC------cc---------Cch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcC-
Confidence 4566677777777776 43 333 46667777777777754 555555 67777777777777663
Q ss_pred CCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeeccc
Q 038150 281 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD 360 (488)
Q Consensus 281 ~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 360 (488)
..++ .++++++|++|++.+|.+.+ + ..+..+++|+.|++++|
T Consensus 98 ~~~~-~~~~l~~L~~L~l~~n~l~~-----------------------------~--------~~l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 98 KNVS-AIAGLQSIKTLDLTSTQITD-----------------------------V--------TPLAGLSNLQVLYLDLN 139 (308)
T ss_dssp SCCG-GGTTCTTCCEEECTTSCCCC-----------------------------C--------GGGTTCTTCCEEECCSS
T ss_pred CCch-hhcCCCCCCEEECCCCCCCC-----------------------------c--------hhhcCCCCCCEEECCCC
Confidence 3333 46666666666665554332 0 12566788999999999
Q ss_pred CchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeee
Q 038150 361 KEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI 440 (488)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l 440 (488)
.+... + .+..+++|+.|++++|.+.. ++. +..+++|++|++++|.. ..++.+..+++|++|++
T Consensus 140 ~l~~~-------------~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L 202 (308)
T 1h6u_A 140 QITNI-------------S-PLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI-SDISPLASLPNLIEVHL 202 (308)
T ss_dssp CCCCC-------------G-GGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEEC
T ss_pred ccCcC-------------c-cccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc-CcChhhcCCCCCCEEEc
Confidence 87532 2 27788999999999999887 666 88999999999999985 44555888999999999
Q ss_pred cccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150 441 WRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 441 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
++|. +..++. ...+|+|+.|.+.+++
T Consensus 203 ~~N~-l~~~~~------------------l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 203 KNNQ-ISDVSP------------------LANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTSC-CCBCGG------------------GTTCTTCCEEEEEEEE
T ss_pred cCCc-cCcccc------------------ccCCCCCCEEEccCCe
Confidence 9987 555432 3468999999988764
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.8e-17 Score=150.81 Aligned_cols=200 Identities=18% Similarity=0.169 Sum_probs=123.3
Q ss_pred ccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCch-hhccccccceeeccC-CCCCCCC
Q 038150 206 SLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRG-TNSLRYM 283 (488)
Q Consensus 206 ~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~-~~~~~~l 283 (488)
.|++|++++|. +..+| +..++.+++|++|++++|..+..+|. .+..+++|++|++++ |. ...+
T Consensus 32 ~l~~L~l~~n~------l~~i~--------~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i 96 (239)
T 2xwt_C 32 STQTLKLIETH------LRTIP--------SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYI 96 (239)
T ss_dssp TCCEEEEESCC------CSEEC--------TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEE
T ss_pred cccEEEEeCCc------ceEEC--------HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEc
Confidence 67777777777 44222 12466777788888877653555554 567778888888877 55 3344
Q ss_pred C-CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeeccc-C
Q 038150 284 P-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD-K 361 (488)
Q Consensus 284 p-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~ 361 (488)
| ..++++++|++|++.+|.+.+ .+. +..++ .++.|+.|++++| .
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~-----lp~----~~~l~-------------------------~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKM-----FPD----LTKVY-------------------------STDIFFILEITDNPY 142 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCS-----CCC----CTTCC-------------------------BCCSEEEEEEESCTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCcc-----ccc----ccccc-------------------------ccccccEEECCCCcc
Confidence 4 456777888888887776543 111 11111 1122336666666 5
Q ss_pred chhhhhhhccccchHHHhhhCCCCCCCC-EEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCC-C-CCCC-CCcCe
Q 038150 362 EEEEEGERRKNEDNQLLLEALRPPLNLK-ELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLP-P-LGKL-QSLEN 437 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~-l~~l-~~L~~ 437 (488)
+... .+..+..+++|+ .|++++|.+.. +|......++|++|++++|...+.++ . ++.+ ++|+.
T Consensus 143 l~~i------------~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 143 MTSI------------PVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp CCEE------------CTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred hhhc------------CcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 4311 123466677888 88888877775 66554444788888888885344544 3 6777 88888
Q ss_pred eeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccccC
Q 038150 438 LHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLREL 487 (488)
Q Consensus 438 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p~L 487 (488)
|+++++. ++.+|. ..|++|+.|.+.+++.|
T Consensus 210 L~l~~N~-l~~l~~-------------------~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 210 LDVSQTS-VTALPS-------------------KGLEHLKELIARNTWTL 239 (239)
T ss_dssp EECTTCC-CCCCCC-------------------TTCTTCSEEECTTC---
T ss_pred EECCCCc-cccCCh-------------------hHhccCceeeccCccCC
Confidence 8888765 555542 25778888888887764
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=5e-17 Score=152.17 Aligned_cols=199 Identities=18% Similarity=-0.001 Sum_probs=141.5
Q ss_pred ccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150 154 LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL 233 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l 233 (488)
....++.+.+..+....+|..+. +++++|++++| .+.. ..+..|..+++|++|+|++|. +..
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~n~------l~~-------- 69 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-LLYT-FSLATLMPYTRLTQLNLDRAE------LTK-------- 69 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-CCSE-EEGGGGTTCTTCCEEECTTSC------CCE--------
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCC-cCCc-cCHHHhhcCCCCCEEECCCCc------cCc--------
Confidence 34566778777777788886653 79999999998 5554 556678999999999999999 553
Q ss_pred cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150 234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC 313 (488)
Q Consensus 234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 313 (488)
+|.. +.+++|++|++++|. +..+|..+..+++|++|++++|.+....|..++++++|++|++.+|.+.. .+.
T Consensus 70 -~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----~~~ 141 (290)
T 1p9a_G 70 -LQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-----LPP 141 (290)
T ss_dssp -EECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-----CCT
T ss_pred -ccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-----cCh
Confidence 3332 688999999999975 77899999999999999999999554444669999999999998886654 111
Q ss_pred CcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh-hhCCCCCCCCEEE
Q 038150 314 RLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL-EALRPPLNLKELE 392 (488)
Q Consensus 314 ~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~ 392 (488)
..+..+++|+.|++++|++. .++ ..+..+++|+.|+
T Consensus 142 ------------------------------~~~~~l~~L~~L~L~~N~l~-------------~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 142 ------------------------------GLLTPTPKLEKLSLANNNLT-------------ELPAGLLNGLENLDTLL 178 (290)
T ss_dssp ------------------------------TTTTTCTTCCEEECTTSCCS-------------CCCTTTTTTCTTCCEEE
T ss_pred ------------------------------hhcccccCCCEEECCCCcCC-------------ccCHHHhcCcCCCCEEE
Confidence 12234455666666666553 122 2344566666666
Q ss_pred eccccCCCCCchHHHhccCCcEEeecCCCC
Q 038150 393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCEN 422 (488)
Q Consensus 393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 422 (488)
+++|.+.. +|..+..+++|+.|++++|+.
T Consensus 179 L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 179 LQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSSCCCC-CCTTTTTTCCCSEEECCSCCB
T ss_pred CCCCcCCc-cChhhcccccCCeEEeCCCCc
Confidence 66666665 666666666666666666653
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=9.6e-17 Score=148.84 Aligned_cols=200 Identities=23% Similarity=0.199 Sum_probs=123.5
Q ss_pred ceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCch
Q 038150 158 VRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE 237 (488)
Q Consensus 158 vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~ 237 (488)
.+.+++.......+|..+. +++++|++.+| .+.. ..+..|.++++|++|++++|. +. .+|.
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~------l~---------~i~~ 78 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSS-LPSKAFHRLTKLRLLYLNDNK------LQ---------TLPA 78 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSC-CCTTSSSSCTTCCEEECCSSC------CS---------CCCT
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCe-eCHHHhcCCCCCCEEECCCCc------cC---------eeCh
Confidence 3455555555555665432 56777777776 3443 333446667777777777776 43 2333
Q ss_pred h-hhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCc
Q 038150 238 T-LCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL 315 (488)
Q Consensus 238 ~-i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 315 (488)
. +..+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..++++++|++|++.+|.+..
T Consensus 79 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------- 147 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---------- 147 (270)
T ss_dssp TTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----------
T ss_pred hhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc----------
Confidence 2 3556777777777755 444443 34667777777777776444334446677777777766654332
Q ss_pred ccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecc
Q 038150 316 ESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEY 395 (488)
Q Consensus 316 ~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 395 (488)
++ ...+..+++|+.|++++|.+... .+..+..+++|+.|++++
T Consensus 148 -------------------~~------~~~~~~l~~L~~L~L~~n~l~~~------------~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 148 -------------------LP------KGVFDKLTSLKELRLYNNQLKRV------------PEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp -------------------CC------TTTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTTCCEEECCS
T ss_pred -------------------cC------HhHccCCcccceeEecCCcCcEe------------ChhHhccCCCcCEEECCC
Confidence 11 12345667788888888876422 123467788889999988
Q ss_pred ccCCCCCchHHHhccCCcEEeecCCCCCC
Q 038150 396 YRGNTVFPSWMTSLTNLKSLDLSSCENCE 424 (488)
Q Consensus 396 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 424 (488)
|.+....+..+..+++|+.|++++|+..-
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 191 NQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 88877333456778889999998887443
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=3.5e-16 Score=160.80 Aligned_cols=214 Identities=22% Similarity=0.166 Sum_probs=164.3
Q ss_pred ccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150 154 LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL 233 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l 233 (488)
....++.++++.+....+|. .+++|++|++++| .+.. +|. .+++|+.|++++|. +.
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~--l~~---~l~~L~~L~L~~N~------l~--------- 134 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTH--LPA---LPSGLCKLWIFGNQ------LT--------- 134 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCC--CCC---CCTTCCEEECCSSC------CS---------
T ss_pred cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCC--CCC---CCCCcCEEECCCCC------CC---------
Confidence 45788999999999888886 6799999999998 5553 443 67899999999999 55
Q ss_pred cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150 234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC 313 (488)
Q Consensus 234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 313 (488)
.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|. +..+| ..+++|++|++.+|.+.+ .+.
T Consensus 135 ~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~~-----l~~ 198 (622)
T 3g06_A 135 SLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLAS-----LPT 198 (622)
T ss_dssp CCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-----CCC
T ss_pred cCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCCC-----CCC
Confidence 34432 4889999999975 667775 35789999999998 45577 457899999999887765 222
Q ss_pred CcccccCCCccccccccc--ccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEE
Q 038150 314 RLESLKNLEHLQVCGISR--LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKEL 391 (488)
Q Consensus 314 ~~~~l~~L~~L~~L~~~~--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 391 (488)
. +++|+.|.+.. +..++ ..+++|+.|++++|.+.. +| ..+++|+.|
T Consensus 199 ~------~~~L~~L~L~~N~l~~l~----------~~~~~L~~L~Ls~N~L~~-------------lp---~~l~~L~~L 246 (622)
T 3g06_A 199 L------PSELYKLWAYNNRLTSLP----------ALPSGLKELIVSGNRLTS-------------LP---VLPSELKEL 246 (622)
T ss_dssp C------CTTCCEEECCSSCCSSCC----------CCCTTCCEEECCSSCCSC-------------CC---CCCTTCCEE
T ss_pred c------cchhhEEECcCCcccccC----------CCCCCCCEEEccCCccCc-------------CC---CCCCcCcEE
Confidence 2 34566655543 23222 124789999999998742 33 456899999
Q ss_pred EeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 392 EIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 392 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
++++|.+.. +|. .+++|+.|++++|.+. .+|. ++.+++|+.|++++|+
T Consensus 247 ~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 247 MVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred ECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 999998887 877 6789999999999865 6776 8899999999999987
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=6e-17 Score=156.93 Aligned_cols=247 Identities=13% Similarity=0.028 Sum_probs=147.3
Q ss_pred CccccccccCcceecccccchhhhhhHH----HHHhcCC-ccceeecCCCcccccccCCcccccccCccCchhhhhh---
Q 038150 171 LPISTLRVKRMRTLLINDHSLLNAAILE----ELFRELT-SLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCEL--- 242 (488)
Q Consensus 171 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~----~~~~~l~-~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L--- 242 (488)
+|..+...++|++|++++| .++. ..+ ..+..++ +|++|+|++|.+ .. ..+..++.+
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n-~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l-----~~---------~~~~~l~~~l~~ 77 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLN-NLYS-ISTVELIQAFANTPASVTSLNLSGNSL-----GF---------KNSDELVQILAA 77 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-CGGG-SCHHHHHHHHHTCCTTCCEEECCSSCG-----GG---------SCHHHHHHHHHT
T ss_pred HHHHHhCCCCceEEEccCC-CCCh-HHHHHHHHHHHhCCCceeEEECcCCCC-----CH---------HHHHHHHHHHhc
Confidence 3444445566999999987 4544 332 5677888 899999999884 22 335566665
Q ss_pred --ccCcEeecCCCCCcccCchhhc----cc-cccceeeccCCCCCCCCCCC----CCC-cccccccCceeecCCCCCCCC
Q 038150 243 --YNLEKLDISDCFNLKELPEGIG----KL-INVKHLLNRGTNSLRYMPVG----IGR-LTGLRTLGEFHVSAGGGVDGR 310 (488)
Q Consensus 243 --~~L~~L~l~~~~~~~~lp~~l~----~L-~~L~~L~l~~~~~~~~lp~~----i~~-L~~L~~L~l~~~~~~~~~~~~ 310 (488)
++|++|++++|......+..+. .+ ++|++|++++|.+....+.. +.. .++|++|++++|.+.+..
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--- 154 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS--- 154 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC---
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH---
Confidence 8899999999874444444443 34 78999999988854333322 233 258888888887665311
Q ss_pred cccCcccccCCC-cccccccccccCCCChhhhhHhhcccC-CCCCceeecccCchhhhhhhccccchHHHhhhCCC-CCC
Q 038150 311 KACRLESLKNLE-HLQVCGISRLGDVSDVGEAKRLELDKK-KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRP-PLN 387 (488)
Q Consensus 311 ~~~~~~~l~~L~-~L~~L~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 387 (488)
.......+..++ +|+.|+++...-.......+...+..+ ++|+.|++++|.+.... ...++..+.. .++
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~--------~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS--------YAELAYIFSSIPNH 226 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC--------HHHHHHHHHHSCTT
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH--------HHHHHHHHhcCCCC
Confidence 011112223343 666666654432222233344455555 47888888877765321 1334555544 347
Q ss_pred CCEEEeccccCCCCCch----HHHhccCCcEEeecCCCCCC-------CCC-CCCCCCCcCeeeecccc
Q 038150 388 LKELEIEYYRGNTVFPS----WMTSLTNLKSLDLSSCENCE-------QLP-PLGKLQSLENLHIWRME 444 (488)
Q Consensus 388 L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~-------~~~-~l~~l~~L~~L~l~~~~ 444 (488)
|+.|+|++|.+...-+. .+..+++|+.|++++|.... .++ .+..+++|+.|++++|.
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 88888887777652222 22456778888887776211 112 25667777777777776
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=148.58 Aligned_cols=206 Identities=16% Similarity=0.109 Sum_probs=153.0
Q ss_pred hhccCcEeecCCCCCcccCchhh--ccccccceeeccCCCCCCCCC----CCCCCcccccccCceeecCCCCCCCCcccC
Q 038150 241 ELYNLEKLDISDCFNLKELPEGI--GKLINVKHLLNRGTNSLRYMP----VGIGRLTGLRTLGEFHVSAGGGVDGRKACR 314 (488)
Q Consensus 241 ~L~~L~~L~l~~~~~~~~lp~~l--~~L~~L~~L~l~~~~~~~~lp----~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 314 (488)
.+.+|++|++++|......|..+ +.+++|++|++++|.+....+ ..+..+++|++|++.+|.+.. ..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------~~ 161 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA-------FS 161 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC-------CC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch-------hh
Confidence 46789999999998777788887 899999999999998665444 235679999999999998754 12
Q ss_pred cccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhh-CCCCCCCCEEEe
Q 038150 315 LESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEA-LRPPLNLKELEI 393 (488)
Q Consensus 315 ~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l 393 (488)
...+..+++|+.|+++...-.....-.....+..+++|+.|++++|.+... ...+.. +..+++|++|++
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----------~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP----------TGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----------HHHHHHHHHHTCCCSSEEC
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----------HHHHHHHHhcCCCCCEEEC
Confidence 245567788888888665421110000112346789999999999998533 222333 467789999999
Q ss_pred ccccCCCCCchHHHhc---cCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcc
Q 038150 394 EYYRGNTVFPSWMTSL---TNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSV 469 (488)
Q Consensus 394 ~~~~~~~~lp~~~~~l---~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 469 (488)
++|.+....|..+..+ ++|++|++++|... .+|. +. ++|++|++++|. ++.+|.
T Consensus 232 s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~-l~~~~~------------------ 289 (310)
T 4glp_A 232 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR-LNRAPQ------------------ 289 (310)
T ss_dssp TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCC-CCSCCC------------------
T ss_pred CCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCc-CCCCch------------------
Confidence 9999988557777665 79999999999866 6665 54 899999999987 554432
Q ss_pred cccCcccccccccccc
Q 038150 470 IIAFPKLKSLSIEVLR 485 (488)
Q Consensus 470 ~~~~p~L~~L~l~~~p 485 (488)
...+|+|+.|.+.+.+
T Consensus 290 ~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 PDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTSCCCCSCEECSSTT
T ss_pred hhhCCCccEEECcCCC
Confidence 3468999999998865
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=4.3e-16 Score=145.95 Aligned_cols=149 Identities=20% Similarity=0.224 Sum_probs=68.5
Q ss_pred hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150 239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL 318 (488)
Q Consensus 239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l 318 (488)
++.+++|++|++++|. +..+|. +.++++|++|++++|.+ ..+| .++++++|++|++.+|.+.+ +..+
T Consensus 64 ~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~L~~n~i~~---------~~~l 130 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLEHNGISD---------INGL 130 (291)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEECTTSCCCC---------CGGG
T ss_pred HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEEECCCCcCCC---------Chhh
Confidence 4555555555555543 344443 55555555555555552 2222 25555555555555544332 1122
Q ss_pred cCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC
Q 038150 319 KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG 398 (488)
Q Consensus 319 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 398 (488)
..+++|+.|++....- ... ..+..+++|+.|++++|.+... +. +..+++|+.|++++|.+
T Consensus 131 ~~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~L~~N~l~~~-------------~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 131 VHLPQLESLYLGNNKI-TDI-----TVLSRLTKLDTLSLEDNQISDI-------------VP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp GGCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCC-------------GG-GTTCTTCCEEECCSSCC
T ss_pred cCCCCCCEEEccCCcC-Ccc-----hhhccCCCCCEEEccCCccccc-------------hh-hcCCCccCEEECCCCcC
Confidence 2222233222221110 000 1234455555555555554321 11 44555555555555555
Q ss_pred CCCCchHHHhccCCcEEeecCCCC
Q 038150 399 NTVFPSWMTSLTNLKSLDLSSCEN 422 (488)
Q Consensus 399 ~~~lp~~~~~l~~L~~L~l~~~~~ 422 (488)
.. +|. +..+++|+.|++++|..
T Consensus 191 ~~-l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 191 SD-LRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CB-CGG-GTTCTTCSEEEEEEEEE
T ss_pred CC-Chh-hccCCCCCEEECcCCcc
Confidence 54 433 45555555555555543
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=1.8e-16 Score=144.17 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=148.1
Q ss_pred cCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCc-hhhhhhccC
Q 038150 167 KAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLP-ETLCELYNL 245 (488)
Q Consensus 167 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp-~~i~~L~~L 245 (488)
....+|. + .+++++|++.+| .+.. ..+..|..+++|++|++++|.. +. .+| ..++++++|
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~n-~l~~-i~~~~~~~l~~L~~L~l~~n~~-----l~---------~i~~~~f~~l~~L 82 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIET-HLRT-IPSHAFSNLPNISRIYVSIDVT-----LQ---------QLESHSFYNLSKV 82 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEESC-CCSE-ECTTTTTTCTTCCEEEEECCSS-----CC---------EECTTTEESCTTC
T ss_pred CccccCC-C--CCcccEEEEeCC-cceE-ECHHHccCCCCCcEEeCCCCCC-----cc---------eeCHhHcCCCcCC
Confidence 3566776 3 358999999997 5654 4555688999999999999962 33 333 357788999
Q ss_pred cEeecCCCCCcccCc-hhhccccccceeeccCCCCCCCCCCCCCCccccc---ccCceee-cCCCCCCCCcccCcccccC
Q 038150 246 EKLDISDCFNLKELP-EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLR---TLGEFHV-SAGGGVDGRKACRLESLKN 320 (488)
Q Consensus 246 ~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~---~L~l~~~-~~~~~~~~~~~~~~~~l~~ 320 (488)
++|++++|+.+..+| ..+..+++|++|++++|.+ ..+|. ++.+++|+ +|++.+| .+..
T Consensus 83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~--------------- 145 (239)
T 2xwt_C 83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTS--------------- 145 (239)
T ss_dssp CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCE---------------
T ss_pred cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhh---------------
Confidence 999999833466665 4678999999999999984 45776 78888887 8888776 4332
Q ss_pred CCcccccccccccCCCChhhhhHhhcccCCCCC-ceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc-C
Q 038150 321 LEHLQVCGISRLGDVSDVGEAKRLELDKKKYLS-SLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR-G 398 (488)
Q Consensus 321 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~ 398 (488)
++ ...+..+++|+ .|++++|.+. .++......++|+.|++++|. +
T Consensus 146 --------------i~------~~~~~~l~~L~~~L~l~~n~l~-------------~i~~~~~~~~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 146 --------------IP------VNAFQGLCNETLTLKLYNNGFT-------------SVQGYAFNGTKLDAVYLNKNKYL 192 (239)
T ss_dssp --------------EC------TTTTTTTBSSEEEEECCSCCCC-------------EECTTTTTTCEEEEEECTTCTTC
T ss_pred --------------cC------cccccchhcceeEEEcCCCCCc-------------ccCHhhcCCCCCCEEEcCCCCCc
Confidence 00 02345567788 8888888763 233333333789999999995 7
Q ss_pred CCCCchHHHhc-cCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150 399 NTVFPSWMTSL-TNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 399 ~~~lp~~~~~l-~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 444 (488)
....+..+..+ ++|+.|++++|... .+|.. .+++|+.|++.++.
T Consensus 193 ~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC-
T ss_pred ccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCcc
Confidence 76234567788 99999999998754 45543 68899999998775
No 89
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=6.8e-16 Score=161.07 Aligned_cols=169 Identities=17% Similarity=0.005 Sum_probs=104.9
Q ss_pred chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCc------------------ccCcccccCC
Q 038150 260 PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK------------------ACRLESLKNL 321 (488)
Q Consensus 260 p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~------------------~~~~~~l~~L 321 (488)
|.....+.+|++|++..+. ...++..+..+++|+.+++..+......+... ......+..+
T Consensus 390 ~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~ 468 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 468 (635)
T ss_dssp CHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred ccchhhhhhhhhhhccccc-cccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc
Confidence 3344456677777777765 23344556666666666665443222100000 0001122334
Q ss_pred CcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC
Q 038150 322 EHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV 401 (488)
Q Consensus 322 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 401 (488)
+.|+.|.+...... ....+..+..+++|+.|++++|++. ...|..+..+++|+.|+|++|.+...
T Consensus 469 ~~L~~L~Ls~N~~~---~~~~~~~~~~l~~L~~L~Ls~N~L~------------~l~~~~f~~l~~L~~L~Ls~N~l~~l 533 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQLE------------QLSPTAFNSLSSLQVLNMSHNNFFSL 533 (635)
T ss_dssp TTCCEEECTTCEEG---GGEECSCCTTCTTCCEEECTTSCCC------------EECTTTTTTCTTCCEEECTTSCCCBC
T ss_pred hhhhhhhhhhcccc---cccCchhhhhccccCEEECCCCccC------------CcChHHHcCCCCCCEEECCCCcCCCC
Confidence 44444444322110 1112345677888999999988875 23356788889999999999988874
Q ss_pred CchHHHhccCCcEEeecCCCCCCCCCC-CCCC-CCcCeeeecccc
Q 038150 402 FPSWMTSLTNLKSLDLSSCENCEQLPP-LGKL-QSLENLHIWRME 444 (488)
Q Consensus 402 lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l-~~L~~L~l~~~~ 444 (488)
.|..+..+++|++|++++|......|. +..+ ++|++|++++|+
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 466788899999999999987776665 7777 579999998765
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.4e-15 Score=156.05 Aligned_cols=173 Identities=19% Similarity=0.178 Sum_probs=111.2
Q ss_pred HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL 280 (488)
Q Consensus 201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~ 280 (488)
+..+++|+.|++++|. +. .+| .++.+++|++|+|++|. +..+|. +..+++|++|++++|.+
T Consensus 39 ~~~L~~L~~L~l~~n~------i~---------~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l- 99 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD------IK---------SVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKI- 99 (605)
T ss_dssp HHHHTTCCCCBCTTCC------CC---------CCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC-
T ss_pred hhcCCCCCEEECcCCC------CC---------CCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCC-
Confidence 4567777777887777 43 333 46777788888887765 555554 77777888888877763
Q ss_pred CCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeeccc
Q 038150 281 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD 360 (488)
Q Consensus 281 ~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 360 (488)
..+| .++.+++|++|++.+|.+.+ +..+..+++|+.|.++...-.. . ..+..+++|+.|++++|
T Consensus 100 ~~l~-~l~~l~~L~~L~Ls~N~l~~---------l~~l~~l~~L~~L~Ls~N~l~~-l-----~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 100 KDLS-SLKDLKKLKSLSLEHNGISD---------INGLVHLPQLESLYLGNNKITD-I-----TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CCCT-TSTTCTTCCEEECTTSCCCC---------CGGGGGCTTCSEEECCSSCCCC-C-----GGGGSCTTCSEEECCSS
T ss_pred CCCh-hhccCCCCCEEEecCCCCCC---------CccccCCCccCEEECCCCccCC-c-----hhhcccCCCCEEECcCC
Confidence 3343 57777777777777766543 2334455555555554332111 1 34566777777777777
Q ss_pred CchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCC
Q 038150 361 KEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCE 424 (488)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 424 (488)
.+... +. +..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|....
T Consensus 164 ~l~~~-------------~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 164 QISDI-------------VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCCC-------------GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred cCCCc-------------hh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 76422 12 6667777777777777766 54 46677777777777776544
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=3.1e-15 Score=137.07 Aligned_cols=62 Identities=19% Similarity=0.028 Sum_probs=37.2
Q ss_pred ccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCC
Q 038150 243 YNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAG 304 (488)
Q Consensus 243 ~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~ 304 (488)
.++++|++++|......|..+.++++|++|++++|.+....|..+.++++|++|++.+|.+.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence 35667777775533333445666777777777776644444444666677777766665443
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=1.1e-16 Score=165.85 Aligned_cols=213 Identities=13% Similarity=0.025 Sum_probs=96.5
Q ss_pred hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC---CCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150 237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL---RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC 313 (488)
Q Consensus 237 ~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~---~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 313 (488)
..+.++++|++|++++|. +..+|..+..+++|++|.++.+... ...+..++.+++|+.|.+..+... .
T Consensus 214 ~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--------~ 284 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN--------E 284 (592)
T ss_dssp HHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT--------T
T ss_pred HHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh--------H
Confidence 334445555555555543 3334555555555555555432211 112233444555555544332111 1
Q ss_pred CcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEe
Q 038150 314 RLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEI 393 (488)
Q Consensus 314 ~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 393 (488)
....+..+++|+.|.+..+. +. ...+...+..+++|+.|+++.+ +.. ..++.....+++|++|++
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~~~-~~~-----------~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL-LE--TEDHCTLIQKCPNLEVLETRNV-IGD-----------RGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC-CC--HHHHHHHHTTCTTCCEEEEEGG-GHH-----------HHHHHHHHHCTTCCEEEE
T ss_pred HHHHHhhcCCCcEEecCCCc-CC--HHHHHHHHHhCcCCCEEeccCc-cCH-----------HHHHHHHHhCCCCCEEEe
Confidence 11122334455555554433 21 1122233455666666666622 211 222333344566777777
Q ss_pred cc----------ccCCC--CCchHHHhccCCcEEeecCCCCCCCCCC-CCC-CCCcCeeeecc---cccceeeCcc-ccC
Q 038150 394 EY----------YRGNT--VFPSWMTSLTNLKSLDLSSCENCEQLPP-LGK-LQSLENLHIWR---MESVKRVGDE-FLG 455 (488)
Q Consensus 394 ~~----------~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~-l~~L~~L~l~~---~~~l~~~~~~-~~~ 455 (488)
++ |...+ .++.....+++|++|+++.+......+. ++. +++|+.|++.+ |..++..|.+ .+.
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 63 22211 0222234566777777754443332222 333 67777777763 3333332211 000
Q ss_pred CCCCCCCCCCCCcccccCcccccccccccc
Q 038150 456 IESDHHGSSSSSSVIIAFPKLKSLSIEVLR 485 (488)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p 485 (488)
.....+++|++|.++.|.
T Consensus 430 ------------~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 430 ------------SLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp ------------HHHHHCTTCCEEEEECCG
T ss_pred ------------HHHHhCCCCCEEEEecCC
Confidence 013458899999987665
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=6.9e-17 Score=156.50 Aligned_cols=246 Identities=11% Similarity=0.053 Sum_probs=165.0
Q ss_pred cccccceeeEEEEecCCcCc-----ccccccc-CcceecccccchhhhhhHHHHHhcC-----CccceeecCCCcccccc
Q 038150 153 ALDEKVRHLMLIFSKAASLP-----ISTLRVK-RMRTLLINDHSLLNAAILEELFREL-----TSLRALDFGGSYHSTRL 221 (488)
Q Consensus 153 ~~~~~vr~l~l~~~~~~~~~-----~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l-----~~Lr~L~Ls~~~~~~~~ 221 (488)
.....+++++++.+.....+ ..+..++ +|++|++++| .++. ..+..+..+ ++|++|+|++|.+
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l---- 92 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGF-KNSDELVQILAAIPANVTSLNLSGNFL---- 92 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGG-SCHHHHHHHHHTSCTTCCEEECCSSCG----
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCH-HHHHHHHHHHhccCCCccEEECcCCcC----
Confidence 34556899999988886665 4566777 8999999998 5554 333344443 9999999999994
Q ss_pred cCCcccccccCccCchhhhh----h-ccCcEeecCCCCCcccCchhh----cc-ccccceeeccCCCCCC----CCCCCC
Q 038150 222 LTPEVPRNIEKLVLPETLCE----L-YNLEKLDISDCFNLKELPEGI----GK-LINVKHLLNRGTNSLR----YMPVGI 287 (488)
Q Consensus 222 ~~~~lp~~i~~l~lp~~i~~----L-~~L~~L~l~~~~~~~~lp~~l----~~-L~~L~~L~l~~~~~~~----~lp~~i 287 (488)
.. ..+..++. + ++|++|++++|.....-+..+ .. .++|++|++++|.+.. .++..+
T Consensus 93 -~~---------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 93 -SY---------KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp -GG---------SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred -Ch---------HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 32 33344444 4 899999999987433333333 33 3699999999998553 223334
Q ss_pred CCcc-cccccCceeecCCCCCCCCcccCcccccCC-CcccccccccccCCCChhhhhHhhccc-CCCCCceeecccCchh
Q 038150 288 GRLT-GLRTLGEFHVSAGGGVDGRKACRLESLKNL-EHLQVCGISRLGDVSDVGEAKRLELDK-KKYLSSLTLWFDKEEE 364 (488)
Q Consensus 288 ~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~ 364 (488)
..++ +|++|++.+|.+.+.. .......+... ++|+.|+++...-.......++..+.. .++|+.|++++|.+..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKN---CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSC---HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred hcCCccccEeeecCCCCchhh---HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 5555 9999999998765411 01111234445 478888876554322233445566666 4699999999998864
Q ss_pred hhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC-------CchHHHhccCCcEEeecCCCCCCC
Q 038150 365 EEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV-------FPSWMTSLTNLKSLDLSSCENCEQ 425 (488)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------lp~~~~~l~~L~~L~l~~~~~~~~ 425 (488)
.. ...+...+..+++|+.|++++|.+... ++..+..+++|+.|++++|.....
T Consensus 240 ~~--------~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 240 PS--------LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CC--------HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HH--------HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 32 245566778889999999999985441 122334677899999999986554
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=4e-16 Score=161.56 Aligned_cols=110 Identities=15% Similarity=-0.016 Sum_probs=65.5
Q ss_pred ccccCcceecccccchhh---hhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCC
Q 038150 176 LRVKRMRTLLINDHSLLN---AAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISD 252 (488)
Q Consensus 176 ~~~~~Lr~L~l~~~~~~~---~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~ 252 (488)
..+++|++|++.++. +. ...++..+.++++|++|++++|. .. .+|..+..+++|++|+++.
T Consensus 189 ~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~------~~---------~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE------IL---------ELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB------GG---------GGHHHHHHCTTCCEEEECB
T ss_pred hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc------HH---------HHHHHHhhhhHHHhhcccc
Confidence 345556666665542 21 11455556667777777777766 33 5667778888888888875
Q ss_pred CCCc---ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeec
Q 038150 253 CFNL---KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS 302 (488)
Q Consensus 253 ~~~~---~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 302 (488)
+... ...+..+..+++|++|.+.++. ...+|..+..+++|++|++.+|.
T Consensus 253 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC
T ss_pred cccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc
Confidence 3322 2233455666667776666643 34455556666677777666655
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=9.8e-15 Score=136.68 Aligned_cols=176 Identities=26% Similarity=0.265 Sum_probs=141.9
Q ss_pred hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150 238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES 317 (488)
Q Consensus 238 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 317 (488)
....+++|++|++++|. +..+| .+..+++|++|++++|.+ ..++. ++++++|++|++.+|.+.+ +..
T Consensus 41 ~~~~l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~---------~~~ 107 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKVKD---------LSS 107 (291)
T ss_dssp CHHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCC---------GGG
T ss_pred chhhcCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCcCCC---------Chh
Confidence 35689999999999975 67775 589999999999999985 44555 8999999999999987664 344
Q ss_pred ccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc
Q 038150 318 LKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR 397 (488)
Q Consensus 318 l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 397 (488)
+..+++|+.|+++...- ... ..+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.
T Consensus 108 l~~l~~L~~L~L~~n~i-~~~-----~~l~~l~~L~~L~l~~n~l~~-------------~-~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGI-SDI-----NGLVHLPQLESLYLGNNKITD-------------I-TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp GTTCTTCCEEECTTSCC-CCC-----GGGGGCTTCCEEECCSSCCCC-------------C-GGGGGCTTCSEEECCSSC
T ss_pred hccCCCCCEEECCCCcC-CCC-----hhhcCCCCCCEEEccCCcCCc-------------c-hhhccCCCCCEEEccCCc
Confidence 77888888888865532 221 357789999999999998742 1 467788999999999999
Q ss_pred CCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeC
Q 038150 398 GNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVG 450 (488)
Q Consensus 398 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 450 (488)
+.. ++. +..+++|++|++++|.. ..++.+..+++|+.|++++|+ +...|
T Consensus 168 l~~-~~~-l~~l~~L~~L~L~~N~i-~~l~~l~~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 168 ISD-IVP-LAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp CCC-CGG-GTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEEEEEEE-EECCC
T ss_pred ccc-chh-hcCCCccCEEECCCCcC-CCChhhccCCCCCEEECcCCc-ccCCc
Confidence 987 655 88999999999999974 557778899999999999987 44444
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=1.6e-14 Score=132.36 Aligned_cols=174 Identities=18% Similarity=0.135 Sum_probs=127.9
Q ss_pred ccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCC
Q 038150 243 YNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLE 322 (488)
Q Consensus 243 ~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 322 (488)
...++++++++. +..+|..+. ++|++|++++|.+....+..++++++|++|++.+|.+.+. ....+..++
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-------SAGVFDDLT 83 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-------CTTTTTTCT
T ss_pred CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-------CHhHhccCC
Confidence 457889999854 788887776 6899999999996666666799999999999999877651 123355667
Q ss_pred cccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150 323 HLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT 400 (488)
Q Consensus 323 ~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 400 (488)
+|+.|.++.. ..++ ...+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+..
T Consensus 84 ~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 84 ELGTLGLANNQLASLP------LGVFDHLTQLDKLYLGGNQLKSL------------PSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp TCCEEECTTSCCCCCC------TTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCEEECCCCcccccC------hhHhcccCCCCEEEcCCCcCCCc------------ChhHhccCCcccEEECcCCcCCc
Confidence 7777766443 3222 24456788888888888887422 12346778888888888888877
Q ss_pred CCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 401 VFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 401 ~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
..+..++.+++|++|++++|......+. +..+++|+.|++++|+
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 3334677888888888888876654443 7788888888888876
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=1e-15 Score=158.57 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=32.9
Q ss_pred ccceeeEEEEecCCc-Cccccc-cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCc
Q 038150 156 EKVRHLMLIFSKAAS-LPISTL-RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSY 216 (488)
Q Consensus 156 ~~vr~l~l~~~~~~~-~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~ 216 (488)
..++++++..+.... .+..+. .+++|++|++.+|..++...++..+.++++|++|++++|.
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 355666666554321 112222 4566677766666444432355555566667777766665
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=8.2e-15 Score=135.01 Aligned_cols=148 Identities=19% Similarity=0.176 Sum_probs=82.1
Q ss_pred hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150 238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES 317 (488)
Q Consensus 238 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 317 (488)
.+..+++|++|++++|. +..+| .+..+++|++|++++|.+ ..+|. ++++++|++|++.+|.+.+ .+.
T Consensus 36 ~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~~N~l~~-----l~~---- 102 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVNRNRLKN-----LNG---- 102 (263)
T ss_dssp CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECCSSCCSC-----CTT----
T ss_pred chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECCCCccCC-----cCc----
Confidence 45566666666666653 55555 566666666666666653 33333 6666666666666554332 000
Q ss_pred ccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc
Q 038150 318 LKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR 397 (488)
Q Consensus 318 l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 397 (488)
+.. ++|+.|++++|.+... +.+..+++|+.|++++|.
T Consensus 103 ----------------------------~~~-~~L~~L~L~~N~l~~~--------------~~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 103 ----------------------------IPS-ACLSRLFLDNNELRDT--------------DSLIHLKNLEILSIRNNK 139 (263)
T ss_dssp ----------------------------CCC-SSCCEEECCSSCCSBS--------------GGGTTCTTCCEEECTTSC
T ss_pred ----------------------------ccc-CcccEEEccCCccCCC--------------hhhcCcccccEEECCCCc
Confidence 001 4455555555554311 235556666666666666
Q ss_pred CCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150 398 GNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 398 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 444 (488)
+.. +| .++.+++|+.|++++|.... ++.+..+++|+.|++++|+
T Consensus 140 i~~-~~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 140 LKS-IV-MLGFLSKLEVLDLHGNEITN-TGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCB-CG-GGGGCTTCCEEECTTSCCCB-CTTSTTCCCCCEEEEEEEE
T ss_pred CCC-Ch-HHccCCCCCEEECCCCcCcc-hHHhccCCCCCEEeCCCCc
Confidence 655 44 45566666666666665433 3446666666666666654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=6.7e-15 Score=151.11 Aligned_cols=176 Identities=24% Similarity=0.244 Sum_probs=142.8
Q ss_pred hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150 238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES 317 (488)
Q Consensus 238 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 317 (488)
.+..|.+|+.|++++|. +..+| .+..+++|++|++++|.+. .++. +.++++|+.|++.+|.+.+ +..
T Consensus 38 ~~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~~---------l~~ 104 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKD---------LSS 104 (605)
T ss_dssp CHHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCC---------CTT
T ss_pred chhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCCC---------Chh
Confidence 36789999999999976 77776 6999999999999999854 4544 8999999999999997765 235
Q ss_pred ccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc
Q 038150 318 LKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR 397 (488)
Q Consensus 318 l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 397 (488)
+..+++|+.|.++...-.. . ..+..+++|+.|++++|.+.. + ..+..+++|+.|+|++|.
T Consensus 105 l~~l~~L~~L~Ls~N~l~~-l-----~~l~~l~~L~~L~Ls~N~l~~-------------l-~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISD-I-----NGLVHLPQLESLYLGNNKITD-------------I-TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp STTCTTCCEEECTTSCCCC-C-----GGGGGCTTCSEEECCSSCCCC-------------C-GGGGSCTTCSEEECCSSC
T ss_pred hccCCCCCEEEecCCCCCC-C-----ccccCCCccCEEECCCCccCC-------------c-hhhcccCCCCEEECcCCc
Confidence 7778888888886544222 1 357889999999999998752 1 567889999999999999
Q ss_pred CCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeC
Q 038150 398 GNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVG 450 (488)
Q Consensus 398 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 450 (488)
+.. ++. +..+++|+.|+|++|.+ ..++.+..+++|+.|+|++|+ +...|
T Consensus 165 l~~-~~~-l~~l~~L~~L~Ls~N~i-~~l~~l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 165 ISD-IVP-LAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp CCC-CGG-GTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEECCSEE-EECCC
T ss_pred CCC-chh-hccCCCCCEEECcCCCC-CCChHHccCCCCCEEEccCCc-CcCCc
Confidence 987 555 88999999999999975 456778999999999999987 44444
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=6.6e-15 Score=141.82 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=48.5
Q ss_pred eEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhh
Q 038150 161 LMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC 240 (488)
Q Consensus 161 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~ 240 (488)
+..+......+|..+ .+++++|++++| .+.. ..+..|.++++|++|+|++|.+ .+.+|. ..+.
T Consensus 14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~-i~~~~f~~l~~L~~L~Ls~N~i-----~~~i~~--------~~f~ 76 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL--PRNAIELRFVLT-KLRV-IQKGAFSGFGDLEKIEISQNDV-----LEVIEA--------DVFS 76 (350)
T ss_dssp EEEESTTCCSCCTTC--CTTCSEEEEESC-CCSE-ECTTSSTTCTTCCEEEEECCTT-----CCEECT--------TSBC
T ss_pred EEecCCCCCccCcCc--CCCCCEEEccCC-cCCC-cCHHHHcCCCCCCEEECcCCCC-----CCccCh--------hHhh
Confidence 333333345555443 245666666665 4443 3333456666666666666653 232211 1234
Q ss_pred hhccCcEeecCCCCCcccC-chhhccccccceeeccCCC
Q 038150 241 ELYNLEKLDISDCFNLKEL-PEGIGKLINVKHLLNRGTN 278 (488)
Q Consensus 241 ~L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~ 278 (488)
++++|+.+...+++.+..+ |..+..+++|++|++++|.
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred cchhhhhhhcccCCcccccCchhhhhccccccccccccc
Confidence 4555544333222234444 3345566666666666665
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=1.1e-14 Score=128.22 Aligned_cols=151 Identities=16% Similarity=0.205 Sum_probs=93.4
Q ss_pred hhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccccc
Q 038150 240 CELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLK 319 (488)
Q Consensus 240 ~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 319 (488)
+.+++|++|++++|. +..+| .+..+++|++|++++|. ...+ ..+..+++|++|++.+|.+.+.
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~------------- 103 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSD------------- 103 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGG-------------
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcc-------------
Confidence 456666666666643 44555 56666666666666663 2222 3466666666666665543210
Q ss_pred CCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc-C
Q 038150 320 NLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR-G 398 (488)
Q Consensus 320 ~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~ 398 (488)
.+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|. +
T Consensus 104 ----------------------~~~~l~~l~~L~~L~Ls~n~i~------------~~~~~~l~~l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 104 ----------------------KIPNLSGLTSLTLLDISHSAHD------------DSILTKINTLPKVNSIDLSYNGAI 149 (197)
T ss_dssp ----------------------GSCCCTTCTTCCEEECCSSBCB------------GGGHHHHTTCSSCCEEECCSCTBC
T ss_pred ----------------------cChhhcCCCCCCEEEecCCccC------------cHhHHHHhhCCCCCEEEccCCCCc
Confidence 0012334556666666666654 2234566677788888888876 4
Q ss_pred CCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150 399 NTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME 444 (488)
Q Consensus 399 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 444 (488)
.. +| .+..+++|++|++++|.. ..++.+..+++|++|++++++
T Consensus 150 ~~-~~-~l~~l~~L~~L~l~~n~i-~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 150 TD-IM-PLKTLPELKSLNIQFDGV-HDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CC-CG-GGGGCSSCCEEECTTBCC-CCCTTGGGCSSCCEEEECBC-
T ss_pred cc-cH-hhcCCCCCCEEECCCCCC-cChHHhccCCCCCEEEeeCcc
Confidence 44 65 577788888888888874 345567778888888887775
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=2.6e-14 Score=125.70 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=124.6
Q ss_pred HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL 280 (488)
Q Consensus 201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~ 280 (488)
...+++|++|++++|. +. .+| .+..+++|++|++++|. +..++ .+..+++|++|++++|.+.
T Consensus 40 ~~~l~~L~~L~l~~n~------i~---------~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 40 EAQMNSLTYITLANIN------VT---------DLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HHHHHTCCEEEEESSC------CS---------CCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCB
T ss_pred hhhcCCccEEeccCCC------cc---------ChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccC
Confidence 4778899999999999 55 455 68899999999999984 55554 8899999999999999876
Q ss_pred CCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeeccc
Q 038150 281 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD 360 (488)
Q Consensus 281 ~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 360 (488)
...|..++++++|++|++.+|.+.+ ..+..+..+++|+.|++++|
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~i~~-----------------------------------~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHSAHDD-----------------------------------SILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSSBCBG-----------------------------------GGHHHHTTCSSCCEEECCSC
T ss_pred cccChhhcCCCCCCEEEecCCccCc-----------------------------------HhHHHHhhCCCCCEEEccCC
Confidence 6678889999999999998875432 11345667899999999999
Q ss_pred C-chhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCC
Q 038150 361 K-EEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCEN 422 (488)
Q Consensus 361 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 422 (488)
. +. .++ .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|+.
T Consensus 147 ~~i~-------------~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 147 GAIT-------------DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TBCC-------------CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred CCcc-------------ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 7 53 223 57788999999999999987 66 688999999999999874
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=1.2e-15 Score=155.58 Aligned_cols=204 Identities=16% Similarity=0.101 Sum_probs=143.4
Q ss_pred ccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc----cCchhhhhhccCcEee-c
Q 038150 176 LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL----VLPETLCELYNLEKLD-I 250 (488)
Q Consensus 176 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l----~lp~~i~~L~~L~~L~-l 250 (488)
..+++|+.|++++| .+. .+|..++++++|+.|+++++.. ...+|..+..+ ..|..++.+++|+.|+ +
T Consensus 346 ~~~~~L~~L~Ls~n-~L~--~Lp~~i~~l~~L~~L~l~~n~~-----l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KST--VLQSELESCKELQELEPENKWC-----LLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417 (567)
T ss_dssp STTTTSSSCCCCHH-HHH--HHHHHHHHHHHHHHHCTTCHHH-----HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred ccCccceeccCChh-hHH--hhHHHHHHHHHHHHhccccchh-----hhhHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence 45788999999997 666 5888899999999999977641 11111100000 5677888899999988 5
Q ss_pred CCCCCcccCch------hhccc--cccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCC
Q 038150 251 SDCFNLKELPE------GIGKL--INVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLE 322 (488)
Q Consensus 251 ~~~~~~~~lp~------~l~~L--~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 322 (488)
+.+ .+..++. .+..+ ..|++|++++|. +..+|. ++++++|++|++++|.+..
T Consensus 418 ~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~----------------- 477 (567)
T 1dce_A 418 RAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRA----------------- 477 (567)
T ss_dssp GHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCC-----------------
T ss_pred hhc-ccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccc-----------------
Confidence 543 2333321 12221 358889999887 445776 8888888888887775432
Q ss_pred cccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCC
Q 038150 323 HLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF 402 (488)
Q Consensus 323 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l 402 (488)
+ +..+..+++|+.|++++|.++ .+| .++.+++|+.|+|++|.+....
T Consensus 478 ------------l-------p~~~~~l~~L~~L~Ls~N~l~-------------~lp-~l~~l~~L~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 478 ------------L-------PPALAALRCLEVLQASDNALE-------------NVD-GVANLPRLQELLLCNNRLQQSA 524 (567)
T ss_dssp ------------C-------CGGGGGCTTCCEEECCSSCCC-------------CCG-GGTTCSSCCEEECCSSCCCSSS
T ss_pred ------------c-------chhhhcCCCCCEEECCCCCCC-------------CCc-ccCCCCCCcEEECCCCCCCCCC
Confidence 1 134566788888999988874 245 7888999999999999988833
Q ss_pred -chHHHhccCCcEEeecCCCCCCCCCCCC----CCCCcCeeee
Q 038150 403 -PSWMTSLTNLKSLDLSSCENCEQLPPLG----KLQSLENLHI 440 (488)
Q Consensus 403 -p~~~~~l~~L~~L~l~~~~~~~~~~~l~----~l~~L~~L~l 440 (488)
|..++.+++|+.|++++|.....+|... .+|+|+.|++
T Consensus 525 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8889999999999999998665554433 3788888753
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=3.4e-14 Score=144.29 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=126.4
Q ss_pred CccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCC
Q 038150 205 TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP 284 (488)
Q Consensus 205 ~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp 284 (488)
.+|++|++++|. +..+| ..+ +++|++|++++|. +..+| ..+++|++|++++|.+. .+|
T Consensus 59 ~~L~~L~Ls~n~------L~~lp---------~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~-~ip 116 (571)
T 3cvr_A 59 NQFSELQLNRLN------LSSLP---------DNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLS-TLP 116 (571)
T ss_dssp TTCSEEECCSSC------CSCCC---------SCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCC
T ss_pred CCccEEEeCCCC------CCccC---------HhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCC-Ccc
Confidence 478888888888 44343 333 2678888888865 56787 55788888888888744 477
Q ss_pred CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCc
Q 038150 285 VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKE 362 (488)
Q Consensus 285 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 362 (488)
. +.+ +|++|++++|.+.+ .+. .+++|+.|.++.. ..++. .+++|+.|++++|.+
T Consensus 117 ~-l~~--~L~~L~Ls~N~l~~-----lp~------~l~~L~~L~Ls~N~l~~lp~----------~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 117 E-LPA--SLKHLDVDNNQLTM-----LPE------LPALLEYINADNNQLTMLPE----------LPTSLEVLSVRNNQL 172 (571)
T ss_dssp C-CCT--TCCEEECCSSCCSC-----CCC------CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCC
T ss_pred h-hhc--CCCEEECCCCcCCC-----CCC------cCccccEEeCCCCccCcCCC----------cCCCcCEEECCCCCC
Confidence 7 655 88888888887665 222 4566676666433 33331 467899999999987
Q ss_pred hhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCC-------cEEeecCCCCCCCCCC-CCCCCC
Q 038150 363 EEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNL-------KSLDLSSCENCEQLPP-LGKLQS 434 (488)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L-------~~L~l~~~~~~~~~~~-l~~l~~ 434 (488)
.+ +|. +. ++|+.|+|++|.+.. +|. +.. +| +.|++++|.+. .+|. +..+++
T Consensus 173 ~~-------------lp~-l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~ 231 (571)
T 3cvr_A 173 TF-------------LPE-LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP 231 (571)
T ss_dssp SC-------------CCC-CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred CC-------------cch-hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence 42 444 44 799999999998886 877 443 67 99999999855 5776 777999
Q ss_pred cCeeeecccccceeeC
Q 038150 435 LENLHIWRMESVKRVG 450 (488)
Q Consensus 435 L~~L~l~~~~~l~~~~ 450 (488)
|+.|++++|+-...+|
T Consensus 232 L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIR 247 (571)
T ss_dssp TEEEECCSSSCCHHHH
T ss_pred CCEEEeeCCcCCCcCH
Confidence 9999999988433333
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=7.7e-17 Score=164.50 Aligned_cols=204 Identities=16% Similarity=0.089 Sum_probs=137.6
Q ss_pred hcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCC-------------CcccCchhhccccc
Q 038150 202 RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCF-------------NLKELPEGIGKLIN 268 (488)
Q Consensus 202 ~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~-------------~~~~lp~~l~~L~~ 268 (488)
..+++|+.|+|++|. +. .+|.+|+++++|+.|++++|. ..+..|..++.+++
T Consensus 346 ~~~~~L~~L~Ls~n~------L~---------~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~ 410 (567)
T 1dce_A 346 ATDEQLFRCELSVEK------ST---------VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 410 (567)
T ss_dssp STTTTSSSCCCCHHH------HH---------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred ccCccceeccCChhh------HH---------hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHh
Confidence 457788888888887 44 678888888888888886653 22233444455555
Q ss_pred cceee-ccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccc--ccCCCChhhhhHhh
Q 038150 269 VKHLL-NRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR--LGDVSDVGEAKRLE 345 (488)
Q Consensus 269 L~~L~-l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~--~~~~~~~~~~~~~~ 345 (488)
|++|+ ++.+. +.+|+.+.+.++.+. .+.. ..|+.|.++. +..++ .
T Consensus 411 L~~L~~l~~n~-----------~~~L~~l~l~~n~i~------------~l~~-~~L~~L~Ls~n~l~~lp-------~- 458 (567)
T 1dce_A 411 LKAVDPMRAAY-----------LDDLRSKFLLENSVL------------KMEY-ADVRVLHLAHKDLTVLC-------H- 458 (567)
T ss_dssp HHHHCGGGHHH-----------HHHHHHHHHHHHHHH------------HHHH-TTCSEEECTTSCCSSCC-------C-
T ss_pred cccCcchhhcc-----------cchhhhhhhhccccc------------ccCc-cCceEEEecCCCCCCCc-------C-
Confidence 55554 22221 122232223222211 1111 1255555533 23322 2
Q ss_pred cccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCC
Q 038150 346 LDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQ 425 (488)
Q Consensus 346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 425 (488)
+..+++|+.|++++|.+ ..+|..++.+++|+.|+|++|.+.. +| .++.+++|+.|++++|.....
T Consensus 459 ~~~l~~L~~L~Ls~N~l-------------~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRL-------------RALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp GGGGTTCCEEECCSSCC-------------CCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred ccccccCcEeecCcccc-------------cccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence 67889999999999987 3567889999999999999999998 88 799999999999999987665
Q ss_pred C-CC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccc
Q 038150 426 L-PP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSI 481 (488)
Q Consensus 426 ~-~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l 481 (488)
. |. ++.+++|+.|++++|+ +..+|...... ...+|+|+.|++
T Consensus 524 ~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l-------------~~~lp~L~~L~l 567 (567)
T 1dce_A 524 AAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERL-------------AEMLPSVSSILT 567 (567)
T ss_dssp STTGGGGGCTTCCEEECTTSG-GGGSSSCTTHH-------------HHHCTTCSEEEC
T ss_pred CCcHHHhcCCCCCEEEecCCc-CCCCccHHHHH-------------HHHCcccCccCC
Confidence 4 65 9999999999999997 55555432111 345899998853
No 106
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=6.8e-16 Score=159.90 Aligned_cols=231 Identities=14% Similarity=0.103 Sum_probs=98.3
Q ss_pred cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150 177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL 256 (488)
Q Consensus 177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~ 256 (488)
.+++|++|++.++ .+....+......+++|++|+|++|.. ++.. .++..+.++++|++|++++|...
T Consensus 103 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~-----~~~~-------~l~~~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 103 SYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEG-----FSTD-------GLAAIAATCRNLKELDLRESDVD 169 (594)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEE-----EEHH-------HHHHHHHHCTTCCEEECTTCEEE
T ss_pred hCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCC-----CCHH-------HHHHHHHhCCCCCEEeCcCCccC
Confidence 4556666666665 344312222222566666666666631 2110 13333445666666666665422
Q ss_pred cc----CchhhccccccceeeccCCCCCCCCC-C----CCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccc
Q 038150 257 KE----LPEGIGKLINVKHLLNRGTNSLRYMP-V----GIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVC 327 (488)
Q Consensus 257 ~~----lp~~l~~L~~L~~L~l~~~~~~~~lp-~----~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 327 (488)
.. ++.....+++|++|++++|. ..+. . .+.++++|++|++.+|.... .....+.++++|+.|
T Consensus 170 ~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-------~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 170 DVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLE-------KLATLLQRAPQLEEL 240 (594)
T ss_dssp CCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHH-------HHHHHHHHCTTCSEE
T ss_pred CcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHH-------HHHHHHhcCCcceEc
Confidence 11 22222244566666666553 1111 1 12234566666555441110 111222333444444
Q ss_pred ccccccC-CC-ChhhhhHhhcccCCCCCce-eecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC-Cc
Q 038150 328 GISRLGD-VS-DVGEAKRLELDKKKYLSSL-TLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV-FP 403 (488)
Q Consensus 328 ~~~~~~~-~~-~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-lp 403 (488)
.+..+.. +. .....+...+.++++|+.| .+..... ..++..+..+++|+.|++++|.+... ++
T Consensus 241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-------------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~ 307 (594)
T 2p1m_B 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-------------AYLPAVYSVCSRLTTLNLSYATVQSYDLV 307 (594)
T ss_dssp ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-------------GGGGGGHHHHTTCCEEECTTCCCCHHHHH
T ss_pred ccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-------------hhHHHHHHhhCCCCEEEccCCCCCHHHHH
Confidence 4332221 00 0111122344555555555 2222211 22233333455666666666653321 12
Q ss_pred hHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecc
Q 038150 404 SWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWR 442 (488)
Q Consensus 404 ~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~ 442 (488)
..+..+++|++|++++|.....++. ...+++|++|++.+
T Consensus 308 ~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence 2233566666666666511111222 22356666666643
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=2.7e-14 Score=145.02 Aligned_cols=181 Identities=21% Similarity=0.134 Sum_probs=111.9
Q ss_pred cceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCc
Q 038150 157 KVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLP 236 (488)
Q Consensus 157 ~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp 236 (488)
.++.+++..+....+|..+ +++|++|++++| .+. .+| ..+++|++|++++|. +. .+|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~--~ip---~~l~~L~~L~Ls~N~------l~---------~ip 116 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALI--SLP---ELPASLEYLDACDNR------LS---------TLP 116 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSS-CCS--CCC---CCCTTCCEEECCSSC------CS---------CCC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCC-CCc--ccc---cccCCCCEEEccCCC------CC---------Ccc
Confidence 6677777777766677654 367777777776 444 244 456777777777777 44 233
Q ss_pred hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcc
Q 038150 237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLE 316 (488)
Q Consensus 237 ~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 316 (488)
. ++. +|++|++++|. +..+|. .+++|++|++++|.+ ..+|. .+++|++|++++|.+.+ .+.
T Consensus 117 ~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L~~-----lp~--- 177 (571)
T 3cvr_A 117 E-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQLTF-----LPE--- 177 (571)
T ss_dssp C-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSC-----CCC---
T ss_pred h-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCCCC-----cch---
Confidence 3 333 77777777765 555665 567777777777773 34555 45677777777665443 111
Q ss_pred cccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCC-------C
Q 038150 317 SLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNL-------K 389 (488)
Q Consensus 317 ~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-------~ 389 (488)
+. ++|+.|++++|.+. .+|. +.. +| +
T Consensus 178 -----------------------------l~--~~L~~L~Ls~N~L~-------------~lp~-~~~--~L~~~~~~L~ 210 (571)
T 3cvr_A 178 -----------------------------LP--ESLEALDVSTNLLE-------------SLPA-VPV--RNHHSEETEI 210 (571)
T ss_dssp -----------------------------CC--TTCCEEECCSSCCS-------------SCCC-CC----------CCE
T ss_pred -----------------------------hh--CCCCEEECcCCCCC-------------chhh-HHH--hhhcccccce
Confidence 11 45666666666653 2222 222 44 7
Q ss_pred EEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCC
Q 038150 390 ELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLP 427 (488)
Q Consensus 390 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 427 (488)
.|++++|.+.. +|.++..+++|+.|+|++|...+.+|
T Consensus 211 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 211 FFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp EEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred EEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 77777777776 77777777777777777777655444
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=1.1e-13 Score=133.35 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=162.9
Q ss_pred ccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCch-hhhhhccCcEeecCCCC
Q 038150 176 LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE-TLCELYNLEKLDISDCF 254 (488)
Q Consensus 176 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~-~i~~L~~L~~L~l~~~~ 254 (488)
+.|.. ++++.+++ .++ .+|..+ .+++++|+|++|. +. .+|. .+.++++|++|+|++|.
T Consensus 7 C~C~~-~~v~C~~~-~Lt--~iP~~l--~~~l~~L~Ls~N~------i~---------~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 7 CHCSN-RVFLCQES-KVT--EIPSDL--PRNAIELRFVLTK------LR---------VIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp SEEET-TEEEEEST-TCC--SCCTTC--CTTCSEEEEESCC------CS---------EECTTSSTTCTTCCEEEEECCT
T ss_pred cEeeC-CEEEecCC-CCC--ccCcCc--CCCCCEEEccCCc------CC---------CcCHHHHcCCCCCCEEECcCCC
Confidence 34433 56777665 566 466533 4789999999999 66 4554 47899999999999987
Q ss_pred CcccCch-hhccccccceeec-cCCCCCCCC-CCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccc
Q 038150 255 NLKELPE-GIGKLINVKHLLN-RGTNSLRYM-PVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR 331 (488)
Q Consensus 255 ~~~~lp~-~l~~L~~L~~L~l-~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~ 331 (488)
..+.+|. .+.++++|+++.. ..|. +..+ |..++++++|++|++.+|.+... +. .. .....++..+.+..
T Consensus 66 i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~-----~~-~~-~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 66 VLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGIKHL-----PD-VH-KIHSLQKVLLDIQD 137 (350)
T ss_dssp TCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECCSSC-----CC-CT-TCCBSSCEEEEEES
T ss_pred CCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhccccccccccccccccC-----Cc-hh-hcccchhhhhhhcc
Confidence 6666765 4688988887544 4555 4445 56689999999999999987651 11 11 11222333444432
Q ss_pred ccCCCChhhhhHhhcccC-CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecc-ccCCCCCch-HHHh
Q 038150 332 LGDVSDVGEAKRLELDKK-KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEY-YRGNTVFPS-WMTS 408 (488)
Q Consensus 332 ~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~lp~-~~~~ 408 (488)
...+.... ...+..+ ..++.|++++|.+. .++.......+|+.|.+.+ +.+.. +|. .+..
T Consensus 138 ~~~i~~l~---~~~f~~~~~~l~~L~L~~N~i~-------------~i~~~~f~~~~L~~l~l~~~n~l~~-i~~~~f~~ 200 (350)
T 4ay9_X 138 NINIHTIE---RNSFVGLSFESVILWLNKNGIQ-------------EIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHG 200 (350)
T ss_dssp CTTCCEEC---TTSSTTSBSSCEEEECCSSCCC-------------EECTTSSTTEEEEEEECTTCTTCCC-CCTTTTTT
T ss_pred cccccccc---ccchhhcchhhhhhcccccccc-------------CCChhhccccchhHHhhccCCcccC-CCHHHhcc
Confidence 22221100 1223333 46888999999873 4455555667899999986 45555 775 5689
Q ss_pred ccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccc
Q 038150 409 LTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEV 483 (488)
Q Consensus 409 l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 483 (488)
+++|+.|++++|. ++.+|. +.+.+|+.|.+.++..++.+|. ...|++|+.+.+.+
T Consensus 201 l~~L~~LdLs~N~-l~~lp~-~~~~~L~~L~~l~~~~l~~lP~------------------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 201 ASGPVILDISRTR-IHSLPS-YGLENLKKLRARSTYNLKKLPT------------------LEKLVALMEASLTY 255 (350)
T ss_dssp EECCSEEECTTSC-CCCCCS-SSCTTCCEEECTTCTTCCCCCC------------------TTTCCSCCEEECSC
T ss_pred CcccchhhcCCCC-cCccCh-hhhccchHhhhccCCCcCcCCC------------------chhCcChhhCcCCC
Confidence 9999999999997 455664 3367778888878888888863 44688999888753
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=7.2e-14 Score=124.02 Aligned_cols=106 Identities=27% Similarity=0.366 Sum_probs=55.1
Q ss_pred cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCch-hhhhhccCcEeecCCCCCcc
Q 038150 179 KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE-TLCELYNLEKLDISDCFNLK 257 (488)
Q Consensus 179 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~-~i~~L~~L~~L~l~~~~~~~ 257 (488)
++|++|++.+| .+.. ..+..|..+++|++|++++|. +. .+|. .+..+++|++|++++|. +.
T Consensus 28 ~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~------l~---------~~~~~~~~~l~~L~~L~Ls~n~-l~ 89 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKS-LPNGVFDELTSLTQLYLGGNK------LQ---------SLPNGVFNKLTSLTYLNLSTNQ-LQ 89 (208)
T ss_dssp TTCSEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSC------CC---------CCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred CCCcEEEcCCC-ccCc-CChhhhcccccCcEEECCCCc------cC---------ccChhhcCCCCCcCEEECCCCc-CC
Confidence 45666666665 3333 333345566666666666665 33 2222 23456666666666654 33
Q ss_pred cCchh-hccccccceeeccCCCCCCCCCCCCCCcccccccCceeec
Q 038150 258 ELPEG-IGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS 302 (488)
Q Consensus 258 ~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 302 (488)
.+|.. ++.+++|++|++++|.+....+..++++++|++|++.+|.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence 44332 4566666666666665332222234555666666555543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=9.3e-14 Score=127.94 Aligned_cols=170 Identities=14% Similarity=0.098 Sum_probs=111.3
Q ss_pred cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150 177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL 256 (488)
Q Consensus 177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~ 256 (488)
.+.++..+.+.++ .+.. ++ .+..+++|++|++++|. +. .+| .++.+++|++|++++|. +
T Consensus 17 ~l~~l~~l~l~~~-~i~~--~~-~~~~l~~L~~L~l~~n~------i~---------~l~-~l~~l~~L~~L~L~~N~-i 75 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTD--LV-SQKELSGVQNFNGDNSN------IQ---------SLA-GMQFFTNLKELHLSHNQ-I 75 (263)
T ss_dssp HHHHHHHHHHTCS-CTTS--EE-CHHHHTTCSEEECTTSC------CC---------CCT-TGGGCTTCCEEECCSSC-C
T ss_pred HHHHHHHHHhcCC-Cccc--cc-chhhcCcCcEEECcCCC------cc---------cch-HHhhCCCCCEEECCCCc-c
Confidence 4677778888876 4443 33 36788999999999998 54 444 67889999999999975 6
Q ss_pred ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCC
Q 038150 257 KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVS 336 (488)
Q Consensus 257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~ 336 (488)
..+|. ++.+++|++|++++|.+ ..+|.. .. ++|++|++.+|.+.+ +..+..+++|+.|+++...- .
T Consensus 76 ~~~~~-l~~l~~L~~L~L~~N~l-~~l~~~-~~-~~L~~L~L~~N~l~~---------~~~l~~l~~L~~L~Ls~N~i-~ 141 (263)
T 1xeu_A 76 SDLSP-LKDLTKLEELSVNRNRL-KNLNGI-PS-ACLSRLFLDNNELRD---------TDSLIHLKNLEILSIRNNKL-K 141 (263)
T ss_dssp CCCGG-GTTCSSCCEEECCSSCC-SCCTTC-CC-SSCCEEECCSSCCSB---------SGGGTTCTTCCEEECTTSCC-C
T ss_pred CCChh-hccCCCCCEEECCCCcc-CCcCcc-cc-CcccEEEccCCccCC---------ChhhcCcccccEEECCCCcC-C
Confidence 77776 88999999999999984 445543 33 889999988886554 12344555555555533221 1
Q ss_pred ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150 337 DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT 400 (488)
Q Consensus 337 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 400 (488)
.. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+..
T Consensus 142 ~~-----~~l~~l~~L~~L~L~~N~i~~~--------------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 142 SI-----VMLGFLSKLEVLDLHGNEITNT--------------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC-----GGGGGCTTCCEEECTTSCCCBC--------------TTSTTCCCCCEEEEEEEEEEC
T ss_pred CC-----hHHccCCCCCEEECCCCcCcch--------------HHhccCCCCCEEeCCCCcccC
Confidence 10 1345556666666666655311 345555666666666655544
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=7.7e-13 Score=117.31 Aligned_cols=154 Identities=19% Similarity=0.135 Sum_probs=82.5
Q ss_pred ccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCcccccC
Q 038150 243 YNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKN 320 (488)
Q Consensus 243 ~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 320 (488)
.+|++|++++|. +..+|. .+..+++|++|++++|.+. .+| ..++++++|++|++.+|.+.. .+
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-----~~-------- 92 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS-----LP-------- 92 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-----CC--------
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCc-----cC--------
Confidence 356667776654 334443 3466667777777666633 333 335666666666666554332 00
Q ss_pred CCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150 321 LEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT 400 (488)
Q Consensus 321 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 400 (488)
...+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+..
T Consensus 93 ----------------------~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 93 ----------------------NGVFDKLTQLKELALNTNQLQSL------------PDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp ----------------------TTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCSC
T ss_pred ----------------------HhHhcCccCCCEEEcCCCcCccc------------CHhHhccCCcCCEEECCCCccce
Confidence 01233445556666665554311 12234556666666666666665
Q ss_pred CCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCc
Q 038150 401 VFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGD 451 (488)
Q Consensus 401 ~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 451 (488)
..+..+..+++|++|++++|+. .+.+++|+.|.++.+..-..+|.
T Consensus 139 ~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 139 VPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHCTTTBBC
T ss_pred eCHHHhccCCCccEEEecCCCe------ecCCCCHHHHHHHHHhCCceeec
Confidence 2233355666777777766642 23445666666666553334443
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=5.2e-14 Score=148.10 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=103.5
Q ss_pred cccccceeeEEEEecCCcCccccccccCcceecccccc----hhhhhhHHHHHhcCCccceeecCCCcccccccCCcccc
Q 038150 153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHS----LLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPR 228 (488)
Q Consensus 153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~----~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~ 228 (488)
.....++++.+..+.....+..+.....|+.+.+.+.. .+. ..+..+..+..|++|+|++|. +.
T Consensus 170 ~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~------l~---- 237 (727)
T 4b8c_D 170 VSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQ------IF---- 237 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSC------CS----
T ss_pred ecCCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCC------CC----
Confidence 34456788888877776666555455555555544321 222 456778999999999999999 55
Q ss_pred cccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCC
Q 038150 229 NIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVD 308 (488)
Q Consensus 229 ~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~ 308 (488)
.+|..+..+++|++|+|++|. +..+|..+++|++|++|++++|.+. .+|..+++|++|++|++.+|.+..
T Consensus 238 -----~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--- 307 (727)
T 4b8c_D 238 -----NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT--- 307 (727)
T ss_dssp -----CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC---
T ss_pred -----CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc---
Confidence 677788899999999999976 6699999999999999999999954 889999999999999998875432
Q ss_pred CCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCC-C
Q 038150 309 GRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPL-N 387 (488)
Q Consensus 309 ~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 387 (488)
++ ..+..+++|+.|++++|.+.+.. |..+..+. .
T Consensus 308 --------------------------lp-------~~~~~l~~L~~L~L~~N~l~~~~------------p~~~~~~~~~ 342 (727)
T 4b8c_D 308 --------------------------LP-------WEFGNLCNLQFLGVEGNPLEKQF------------LKILTEKSVT 342 (727)
T ss_dssp --------------------------CC-------SSTTSCTTCCCEECTTSCCCSHH------------HHHHHHHHHH
T ss_pred --------------------------cC-------hhhhcCCCccEEeCCCCccCCCC------------hHHHhhcchh
Confidence 11 23556778888888888876432 22222111 1
Q ss_pred CCEEEeccccCCCCCchHHHhccCCcEEeecCC
Q 038150 388 LKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSC 420 (488)
Q Consensus 388 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 420 (488)
+..|.+++|.+...+|. .|+.|+++.+
T Consensus 343 ~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 343 GLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHCCCCCCCCC------C---------
T ss_pred hhHHhhccCcccCcCcc------ccceeEeecc
Confidence 12356777777654554 5666777666
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1.2e-12 Score=117.86 Aligned_cols=131 Identities=19% Similarity=0.101 Sum_probs=66.2
Q ss_pred ccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCcccccCC
Q 038150 243 YNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNL 321 (488)
Q Consensus 243 ~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 321 (488)
++|++|++++|......|..+..+++|++|++++|.+ ..+| ..++++++|++|++.+|.+..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~---------------- 102 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTV---------------- 102 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCC----------------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCc----------------
Confidence 5566666666553333345556666666666666653 3333 234556666666655553322
Q ss_pred CcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC
Q 038150 322 EHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV 401 (488)
Q Consensus 322 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 401 (488)
++ ...+..+++|+.|++++|.+ ..+|..+..+++|+.|++++|.+...
T Consensus 103 -------------l~------~~~~~~l~~L~~L~Ls~N~l-------------~~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 103 -------------LP------SAVFDRLVHLKELFMCCNKL-------------TELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp -------------CC------TTTTTTCTTCCEEECCSSCC-------------CSCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred -------------cC------hhHhCcchhhCeEeccCCcc-------------cccCcccccCCCCCEEECCCCcCCcc
Confidence 00 01233445555555555554 23344445555555555555555542
Q ss_pred CchHHHhccCCcEEeecCCCC
Q 038150 402 FPSWMTSLTNLKSLDLSSCEN 422 (488)
Q Consensus 402 lp~~~~~l~~L~~L~l~~~~~ 422 (488)
.+..+..+++|+.|++++|+.
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSCB
T ss_pred CHHHHhCCCCCCEEEeeCCCc
Confidence 223344555555555555543
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=1.1e-12 Score=117.38 Aligned_cols=59 Identities=10% Similarity=0.171 Sum_probs=31.5
Q ss_pred ccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeec
Q 038150 243 YNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS 302 (488)
Q Consensus 243 ~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 302 (488)
.+|++|++++|. +..+|. .+..+++|++|++++|.+....|..+.++++|++|++++|.
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345666666644 333332 45556666666666665443334555556666666555554
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=1.6e-12 Score=116.96 Aligned_cols=149 Identities=19% Similarity=0.138 Sum_probs=81.7
Q ss_pred CcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcc
Q 038150 245 LEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHL 324 (488)
Q Consensus 245 L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 324 (488)
.+.++.+++ .+..+|..+. ++|++|++++|.+....|..++++++|++|++.+|.+..
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~------------------- 78 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA------------------- 78 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-------------------
Confidence 345555553 3555555443 566666666666444445556666666666665554322
Q ss_pred cccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCch
Q 038150 325 QVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS 404 (488)
Q Consensus 325 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~ 404 (488)
++ ...+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.. +|.
T Consensus 79 ----------i~------~~~~~~l~~L~~L~Ls~N~l~~l------------~~~~~~~l~~L~~L~Ls~N~l~~-lp~ 129 (229)
T 3e6j_A 79 ----------LP------VGVFDSLTQLTVLDLGTNQLTVL------------PSAVFDRLVHLKELFMCCNKLTE-LPR 129 (229)
T ss_dssp ----------CC------TTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCCS-CCT
T ss_pred ----------cC------hhhcccCCCcCEEECCCCcCCcc------------ChhHhCcchhhCeEeccCCcccc-cCc
Confidence 00 01233455566666666655311 12334556666666666666665 666
Q ss_pred HHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 405 WMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 405 ~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
.+..+++|++|++++|......+. +..+++|+.|++.+|+
T Consensus 130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 666666666666666654432222 5566666666666554
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=5.6e-13 Score=128.81 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=31.3
Q ss_pred cccCCCCCceeecccCchhhhhhhccccchHHHhhh-C---CCCCCCCEEEeccccCCCCCc-hHHHhccC--CcEEeec
Q 038150 346 LDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEA-L---RPPLNLKELEIEYYRGNTVFP-SWMTSLTN--LKSLDLS 418 (488)
Q Consensus 346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~lp-~~~~~l~~--L~~L~l~ 418 (488)
+..+++|+.|++++|.+.. +|.. + ..+++|+.|+|++|.+.. +| ..+..+++ |+.|++.
T Consensus 132 ~~~l~~L~~L~L~~N~l~~-------------l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 132 FEDMAQLQKLYLSQNQISR-------------FPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp TTTCTTCCEEECCSSCCCS-------------CCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHTTEECC
T ss_pred hCCcccCCEEECCCCcCCe-------------eCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcceEEec
Confidence 3445566666666665532 1222 1 345566666666666655 33 34445554 3556666
Q ss_pred CCC
Q 038150 419 SCE 421 (488)
Q Consensus 419 ~~~ 421 (488)
+|+
T Consensus 198 ~N~ 200 (361)
T 2xot_A 198 NNP 200 (361)
T ss_dssp SSC
T ss_pred CCC
Confidence 555
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=2.1e-12 Score=115.46 Aligned_cols=148 Identities=16% Similarity=0.129 Sum_probs=107.4
Q ss_pred cEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccc
Q 038150 246 EKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQ 325 (488)
Q Consensus 246 ~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 325 (488)
+.++++++ .+..+|..+. ++|++|++++|.+....+..+.++++|++|++.+|.+.. .
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-----~-------------- 71 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-----L-------------- 71 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-----E--------------
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-----c--------------
Confidence 67888885 4788887665 789999999998554444578999999999998876543 0
Q ss_pred ccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh-hhCCCCCCCCEEEeccccCCCCCch
Q 038150 326 VCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL-EALRPPLNLKELEIEYYRGNTVFPS 404 (488)
Q Consensus 326 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~lp~ 404 (488)
.+..+.++++|+.|++++|.+. .++ ..+..+++|+.|+|++|.+....|.
T Consensus 72 ----------------~~~~~~~l~~L~~L~Ls~N~l~-------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 122 (220)
T 2v9t_B 72 ----------------APDAFQGLRSLNSLVLYGNKIT-------------ELPKSLFEGLFSLQLLLLNANKINCLRVD 122 (220)
T ss_dssp ----------------CTTTTTTCSSCCEEECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ----------------CHHHhhCCcCCCEEECCCCcCC-------------ccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence 0133455677777778777763 223 3356778888888888887774566
Q ss_pred HHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 405 WMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 405 ~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
.+..+++|++|++++|......+. +..+++|++|++++|+
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 777888888888888876555444 7778888888888776
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=1.8e-12 Score=115.86 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=68.5
Q ss_pred CcEeecCCCCCcccC-c-hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCC
Q 038150 245 LEKLDISDCFNLKEL-P-EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLE 322 (488)
Q Consensus 245 L~~L~l~~~~~~~~l-p-~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 322 (488)
+++|++++|. +..+ | ..+..+++|++|++++|.+....+..++++++|++|++.+|.+.. .
T Consensus 34 ~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-----~----------- 96 (220)
T 2v70_A 34 TAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-----V----------- 96 (220)
T ss_dssp CSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC-----C-----------
T ss_pred CCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc-----c-----------
Confidence 4667777654 3433 2 235666677777776666433333456666666666666654432 0
Q ss_pred cccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCC
Q 038150 323 HLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF 402 (488)
Q Consensus 323 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l 402 (488)
+ ...+..+++|+.|++++|.+.. ..+..+..+++|+.|+|++|.+....
T Consensus 97 -------------~------~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 97 -------------Q------HKMFKGLESLKTLMLRSNRITC------------VGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp -------------C------GGGGTTCSSCCEEECTTSCCCC------------BCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred -------------C------HhHhcCCcCCCEEECCCCcCCe------------ECHhHcCCCccCCEEECCCCcCCEEC
Confidence 0 0123344555555555555431 12344555555666666655555533
Q ss_pred chHHHhccCCcEEeecCCCC
Q 038150 403 PSWMTSLTNLKSLDLSSCEN 422 (488)
Q Consensus 403 p~~~~~l~~L~~L~l~~~~~ 422 (488)
|..+..+++|+.|++++|+.
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCE
T ss_pred HHHhcCCCCCCEEEecCcCC
Confidence 55555555666666655553
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=3.5e-12 Score=114.01 Aligned_cols=150 Identities=17% Similarity=0.124 Sum_probs=118.0
Q ss_pred CcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCC-CCCCcccccccCceeecCCCCCCCCcccCcccccCCCc
Q 038150 245 LEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEH 323 (488)
Q Consensus 245 L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 323 (488)
-++++++++. +..+|..+. ..+++|++++|.+....|. .++++++|++|++.+|.+..
T Consensus 13 ~~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~------------------ 71 (220)
T 2v70_A 13 GTTVDCSNQK-LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD------------------ 71 (220)
T ss_dssp TTEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE------------------
T ss_pred CCEeEeCCCC-cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE------------------
Confidence 3688998854 777887664 4568999999985444343 37889999999988775443
Q ss_pred ccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCc
Q 038150 324 LQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFP 403 (488)
Q Consensus 324 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp 403 (488)
++ ...+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+....|
T Consensus 72 -----------i~------~~~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 72 -----------IE------EGAFEGASGVNEILLTSNRLENV------------QHKMFKGLESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp -----------EC------TTTTTTCTTCCEEECCSSCCCCC------------CGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred -----------EC------HHHhCCCCCCCEEECCCCccCcc------------CHhHhcCCcCCCEEECCCCcCCeECH
Confidence 00 12456678899999999988532 34568889999999999999998558
Q ss_pred hHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150 404 SWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME 444 (488)
Q Consensus 404 ~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 444 (488)
..+..+++|++|++++|......|. +..+++|++|++++|+
T Consensus 123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 8889999999999999997776665 8999999999999987
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=2.7e-12 Score=109.64 Aligned_cols=132 Identities=20% Similarity=0.137 Sum_probs=106.7
Q ss_pred ccccceeeEEEEecCC--cCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCccccccc
Q 038150 154 LDEKVRHLMLIFSKAA--SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIE 231 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~ 231 (488)
....++++.+..+... .+|..+..+++|++|++.+| .+.. . ..+..+++|++|++++|.+ ..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~-~--~~~~~l~~L~~L~Ls~N~l-----~~------- 85 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLIS-V--SNLPKLPKLKKLELSENRI-----FG------- 85 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCC-C--SSCCCCSSCCEEEEESCCC-----CS-------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCC-h--hhhccCCCCCEEECcCCcC-----ch-------
Confidence 3467889999988886 88888889999999999998 4654 3 5578899999999999984 32
Q ss_pred CccCchhhhhhccCcEeecCCCCCcccCc--hhhccccccceeeccCCCCCCCCCC----CCCCcccccccCceeecCCC
Q 038150 232 KLVLPETLCELYNLEKLDISDCFNLKELP--EGIGKLINVKHLLNRGTNSLRYMPV----GIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 232 ~l~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~l~~~~~~~ 305 (488)
.+|..++.+++|++|++++|. +..+| ..+..+++|++|++++|.+ ..+|. .+..+++|++|++..|....
T Consensus 86 --~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 86 --GLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp --CCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred --HHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 366777789999999999975 66665 6888999999999999984 44555 68889999999998886543
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=3.9e-12 Score=122.88 Aligned_cols=171 Identities=22% Similarity=0.189 Sum_probs=124.0
Q ss_pred cceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchh-hc-cccccceeeccCCCCCCCCC
Q 038150 207 LRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEG-IG-KLINVKHLLNRGTNSLRYMP 284 (488)
Q Consensus 207 Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-l~-~L~~L~~L~l~~~~~~~~lp 284 (488)
-++++++++. +..+|. .+. ..+++|++++|. +..+|.. +. .+++|++|++++|.+....+
T Consensus 20 ~~~l~c~~~~------l~~iP~---------~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~ 81 (361)
T 2xot_A 20 SNILSCSKQQ------LPNVPQ---------SLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81 (361)
T ss_dssp TTEEECCSSC------CSSCCS---------SCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECT
T ss_pred CCEEEeCCCC------cCccCc---------cCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccCh
Confidence 4788888888 664444 322 347889999976 5555544 44 88999999999988544444
Q ss_pred CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchh
Q 038150 285 VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEE 364 (488)
Q Consensus 285 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 364 (488)
..++++++|++|++++|.+.. ++ ...+..+++|+.|++++|.+..
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~-----------------------------~~------~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHT-----------------------------LD------EFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCE-----------------------------EC------TTTTTTCTTCCEEECCSSCCCE
T ss_pred hhccCCCCCCEEECCCCcCCc-----------------------------CC------HHHhCCCcCCCEEECCCCcccE
Confidence 568888999999888775432 00 1245667889999999998752
Q ss_pred hhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHH----HhccCCcEEeecCCCCCCCCCC--CCCCCC--cC
Q 038150 365 EEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWM----TSLTNLKSLDLSSCENCEQLPP--LGKLQS--LE 436 (488)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~--l~~l~~--L~ 436 (488)
..+..+..+++|+.|+|++|.+.. +|..+ ..+++|+.|+|++|.+. .+|. +..++. |+
T Consensus 127 ------------~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 127 ------------VDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKN 192 (361)
T ss_dssp ------------ECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHT
T ss_pred ------------ECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcc
Confidence 235678889999999999999988 77665 57899999999999855 4542 666776 48
Q ss_pred eeeecccc
Q 038150 437 NLHIWRME 444 (488)
Q Consensus 437 ~L~l~~~~ 444 (488)
.|++.+|+
T Consensus 193 ~l~l~~N~ 200 (361)
T 2xot_A 193 GLYLHNNP 200 (361)
T ss_dssp TEECCSSC
T ss_pred eEEecCCC
Confidence 89998887
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=1.9e-12 Score=136.26 Aligned_cols=115 Identities=21% Similarity=0.201 Sum_probs=96.2
Q ss_pred CccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeec
Q 038150 171 LPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDI 250 (488)
Q Consensus 171 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l 250 (488)
.+..+..++.|++|++++| .+. .++..+.++++|++|+|++|. +. .+|..+++|++|++|+|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n-~l~--~l~~~~~~l~~L~~L~Ls~N~------l~---------~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNL-QIF--NISANIFKYDFLTRLYLNGNS------LT---------ELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp ------CCCCCCEEECTTS-CCS--CCCGGGGGCCSCSCCBCTTSC------CS---------CCCGGGGGGTTCCEEEC
T ss_pred ChhhhccCCCCcEEECCCC-CCC--CCChhhcCCCCCCEEEeeCCc------Cc---------ccChhhhCCCCCCEEeC
Confidence 3556778999999999998 454 355556799999999999999 54 67888999999999999
Q ss_pred CCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150 251 SDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 251 ~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~ 305 (488)
++|. +..+|..++.|++|++|++++|. +..+|..+++|++|++|++.+|.+.+
T Consensus 278 s~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 278 SHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred cCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCC
Confidence 9987 66999999999999999999998 56889999999999999999998765
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=3.3e-12 Score=106.67 Aligned_cols=125 Identities=22% Similarity=0.179 Sum_probs=88.7
Q ss_pred cccceeeEEEEecCC--cCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 155 DEKVRHLMLIFSKAA--SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 155 ~~~vr~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
...++++.+..+... .+|..+..+++|++|++.+| .+.. . ..+..+++|++|++++|.+ .+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~-~--~~~~~l~~L~~L~Ls~n~i-----~~-------- 78 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTS-I--ANLPKLNKLKKLELSDNRV-----SG-------- 78 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCC-C--TTCCCCTTCCEEECCSSCC-----CS--------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCC-c--hhhhcCCCCCEEECCCCcc-----cc--------
Confidence 356777777777765 67777777888888888887 5554 3 4467788888888888874 22
Q ss_pred ccCchhhhhhccCcEeecCCCCCcccCc--hhhccccccceeeccCCCCCCCCCC----CCCCcccccccCce
Q 038150 233 LVLPETLCELYNLEKLDISDCFNLKELP--EGIGKLINVKHLLNRGTNSLRYMPV----GIGRLTGLRTLGEF 299 (488)
Q Consensus 233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~l~ 299 (488)
.+|..++.+++|++|++++|. +..+| ..++.+++|++|++++|.+ ..+|. .++.+++|++|+++
T Consensus 79 -~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 79 -GLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -CTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred -hHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence 366667778888888888865 55544 6778888888888888874 33443 46777778777764
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=1.3e-11 Score=105.40 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=24.2
Q ss_pred hhCCCCCCCCEEEeccccCCCCCch----HHHhccCCcEEeecCCC
Q 038150 380 EALRPPLNLKELEIEYYRGNTVFPS----WMTSLTNLKSLDLSSCE 421 (488)
Q Consensus 380 ~~~~~~~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~~ 421 (488)
..+..+++|+.|++++|.+.. +|. .+..+++|++|++++|.
T Consensus 114 ~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 114 EPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp GGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETT
T ss_pred HHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCC
Confidence 345555666666666666655 443 45566666666666665
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=1.9e-11 Score=102.05 Aligned_cols=128 Identities=18% Similarity=0.164 Sum_probs=81.6
Q ss_pred ccCcEeecCCCCCc-ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCC
Q 038150 243 YNLEKLDISDCFNL-KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNL 321 (488)
Q Consensus 243 ~~L~~L~l~~~~~~-~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 321 (488)
++|++|++++|... ..+|..+..+++|++|++++|.+. .+ ..++++++|++|++++|.+.+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~n~i~~~--------------- 79 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG--------------- 79 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTCCCCTTCCEEECCSSCCCSC---------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhhhcCCCCCEEECCCCcccch---------------
Confidence 55666666665532 256666666667777777666533 23 4566667777776666543320
Q ss_pred CcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC
Q 038150 322 EHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV 401 (488)
Q Consensus 322 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 401 (488)
.+..+..+++|+.|++++|.+.+. ..+..+..+++|+.|++++|.+..
T Consensus 80 --------------------~~~~~~~l~~L~~L~ls~N~i~~~-----------~~~~~~~~l~~L~~L~l~~N~l~~- 127 (149)
T 2je0_A 80 --------------------LEVLAEKCPNLTHLNLSGNKIKDL-----------STIEPLKKLENLKSLDLFNCEVTN- 127 (149)
T ss_dssp --------------------THHHHHHCTTCCEEECTTSCCCSH-----------HHHGGGGGCTTCCEEECTTCGGGG-
T ss_pred --------------------HHHHhhhCCCCCEEECCCCcCCCh-----------HHHHHHhhCCCCCEEeCcCCcccc-
Confidence 113344567777888887776421 234667778888888888888877
Q ss_pred Cch----HHHhccCCcEEeecC
Q 038150 402 FPS----WMTSLTNLKSLDLSS 419 (488)
Q Consensus 402 lp~----~~~~l~~L~~L~l~~ 419 (488)
+|. .++.+++|++|++++
T Consensus 128 ~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 128 LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp STTHHHHHHHHCTTCCEETTBC
T ss_pred hHHHHHHHHHHCCCcccccCCC
Confidence 554 677888888888763
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=1.6e-12 Score=114.29 Aligned_cols=157 Identities=18% Similarity=0.105 Sum_probs=102.4
Q ss_pred HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL 280 (488)
Q Consensus 201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~ 280 (488)
+.....+..++++.+.+ .+.+|. +. .+|..++.+++|++|++++|. +..+| .+..+++|++|++++|. .
T Consensus 14 ~~~~~~l~~l~l~~~~l-----~~~~~~-l~--~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l 82 (198)
T 1ds9_A 14 FEERKSVVATEAEKVEL-----HGMIPP-IE--KMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-I 82 (198)
T ss_dssp HHHTTCCCCTTCSEEEC-----CBCCTT-CC--CCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-E
T ss_pred HHhcccccCcchheeEe-----ccccCc-Hh--hhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-c
Confidence 56777888888887775 333321 11 566688888899999998865 66677 88888888999888887 4
Q ss_pred CCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeeccc
Q 038150 281 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD 360 (488)
Q Consensus 281 ~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 360 (488)
..+|..++.+++|++|++.+|.+.+ . ..+..+++|+.|++++|
T Consensus 83 ~~l~~~~~~~~~L~~L~L~~N~l~~-----l--------------------------------~~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 83 KKIENLDAVADTLEELWISYNQIAS-----L--------------------------------SGIEKLVNLRVLYMSNN 125 (198)
T ss_dssp CSCSSHHHHHHHCSEEEEEEEECCC-----H--------------------------------HHHHHHHHSSEEEESEE
T ss_pred ccccchhhcCCcCCEEECcCCcCCc-----C--------------------------------CccccCCCCCEEECCCC
Confidence 4677767777888888888876543 0 12334455666666666
Q ss_pred CchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCch----------HHHhccCCcEEe
Q 038150 361 KEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS----------WMTSLTNLKSLD 416 (488)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~----------~~~~l~~L~~L~ 416 (488)
.+... .....+..+++|+.|++++|.+....|. .+..+++|+.|+
T Consensus 126 ~i~~~-----------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 126 KITNW-----------GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ECCCH-----------HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCch-----------hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 65321 1113456666777777777665442222 255667777665
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=1.4e-11 Score=107.50 Aligned_cols=129 Identities=18% Similarity=0.132 Sum_probs=95.5
Q ss_pred eeeEEEEecCCcCccccccccCcceecccccchhhhhhHHH-HHhcCCccceeecCCCcccccccCCcccccccCccCch
Q 038150 159 RHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEE-LFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE 237 (488)
Q Consensus 159 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~ 237 (488)
+.+.++.+....+|..+. .++++|++.+| .+.. ..+. .|..+++|++|+|++|.+ .+ ..|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n-~i~~-~~~~~~~~~l~~L~~L~Ls~N~l-----~~---------~~~~ 72 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDN-ELGR-ISSDGLFGRLPHLVKLELKRNQL-----TG---------IEPN 72 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSC-CCCS-BCCSCSGGGCTTCCEEECCSSCC-----CC---------BCTT
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCC-cCCc-cCCccccccCCCCCEEECCCCCC-----CC---------cCHh
Confidence 456666666677776553 48899999887 5553 3332 378889999999999984 32 3356
Q ss_pred hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150 238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 238 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~ 305 (488)
.++.+++|++|++++|......|..+..+++|++|++++|.+....|..++.+++|++|++.+|.+..
T Consensus 73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 77888899999999976444444557888999999999988766667788889999999888887654
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=2.2e-11 Score=104.70 Aligned_cols=127 Identities=18% Similarity=0.103 Sum_probs=73.1
Q ss_pred ccccceeeEEEEecCCcCccccccc-cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150 154 LDEKVRHLMLIFSKAASLPISTLRV-KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232 (488)
Q Consensus 154 ~~~~vr~l~l~~~~~~~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~ 232 (488)
....++.+.+..+....++. +..+ ++|++|++++| .+.. . ..+..+++|++|++++|. +.
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~-~--~~l~~l~~L~~L~Ls~N~------l~-------- 77 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRK-L--DGFPLLRRLKTLLVNNNR------IC-------- 77 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCE-E--CCCCCCSSCCEEECCSSC------CC--------
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCc-c--cccccCCCCCEEECCCCc------cc--------
Confidence 34455666666666655543 3333 36666666665 4443 2 235666666677776666 33
Q ss_pred ccCchhh-hhhccCcEeecCCCCCcccCch--hhccccccceeeccCCCCCCCCCCC----CCCcccccccCceeec
Q 038150 233 LVLPETL-CELYNLEKLDISDCFNLKELPE--GIGKLINVKHLLNRGTNSLRYMPVG----IGRLTGLRTLGEFHVS 302 (488)
Q Consensus 233 l~lp~~i-~~L~~L~~L~l~~~~~~~~lp~--~l~~L~~L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~l~~~~ 302 (488)
.+|..+ +.+++|++|++++|. +..+|. .++.+++|++|++++|.+ ..+|.. ++.+++|++|++..|.
T Consensus 78 -~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 78 -RIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp -EECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred -ccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 333333 566666777776654 455555 566666666666666663 344543 5666666666666553
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=7.7e-11 Score=102.84 Aligned_cols=128 Identities=15% Similarity=0.118 Sum_probs=90.0
Q ss_pred ceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchh--hccccccceeeccCCCCCCCCCC
Q 038150 208 RALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEG--IGKLINVKHLLNRGTNSLRYMPV 285 (488)
Q Consensus 208 r~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~--l~~L~~L~~L~l~~~~~~~~lp~ 285 (488)
++++++++. ++.+|. .+.. +|++|++++|. +..+|.. ++.+++|++|++++|.+....|.
T Consensus 11 ~~l~~s~~~------l~~ip~---------~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 72 (192)
T 1w8a_A 11 TTVDCTGRG------LKEIPR---------DIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72 (192)
T ss_dssp TEEECTTSC------CSSCCS---------CCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred CEEEcCCCC------cCcCcc---------CCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHh
Confidence 678888888 664443 3322 78888998875 5666543 78888999999988886666677
Q ss_pred CCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhh
Q 038150 286 GIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEE 365 (488)
Q Consensus 286 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 365 (488)
.++++++|++|++++|.+.+ .+ +..+..+++|+.|++++|.+.+
T Consensus 73 ~~~~l~~L~~L~Ls~N~l~~-----~~------------------------------~~~~~~l~~L~~L~L~~N~l~~- 116 (192)
T 1w8a_A 73 AFEGASHIQELQLGENKIKE-----IS------------------------------NKMFLGLHQLKTLNLYDNQISC- 116 (192)
T ss_dssp TTTTCTTCCEEECCSCCCCE-----EC------------------------------SSSSTTCTTCCEEECCSSCCCE-
T ss_pred HcCCcccCCEEECCCCcCCc-----cC------------------------------HHHhcCCCCCCEEECCCCcCCe-
Confidence 78888888888888775543 00 0224456778888888887642
Q ss_pred hhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150 366 EGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT 400 (488)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 400 (488)
..|..+..+++|+.|++++|.+..
T Consensus 117 -----------~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 117 -----------VMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp -----------ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred -----------eCHHHhhcCCCCCEEEeCCCCccC
Confidence 235667778888888888887764
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.06 E-value=1.1e-10 Score=100.29 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=23.5
Q ss_pred hCCCCCCCCEEEeccccCCCCCchH----HHhccCCcEEeecCCC
Q 038150 381 ALRPPLNLKELEIEYYRGNTVFPSW----MTSLTNLKSLDLSSCE 421 (488)
Q Consensus 381 ~~~~~~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~~~ 421 (488)
.+..+++|+.|++++|.+.. +|.. +..+++|+.|++++|.
T Consensus 108 ~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 108 PLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred hhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 34455566666666666554 5553 5566666666666554
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=3.9e-12 Score=111.79 Aligned_cols=141 Identities=18% Similarity=0.173 Sum_probs=100.0
Q ss_pred HHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccC
Q 038150 197 LEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRG 276 (488)
Q Consensus 197 ~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~ 276 (488)
+|..+..+++|++|++++|. +. .+| .++.+++|++|++++|. +..+|..+..+++|++|++++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~------l~---------~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNN------IE---------KIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEE------ES---------CCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEE
T ss_pred hhHHHhcCCCCCEEECCCCC------Cc---------ccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcC
Confidence 44578999999999999998 44 556 78899999999999975 678898888889999999999
Q ss_pred CCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCcee
Q 038150 277 TNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLT 356 (488)
Q Consensus 277 ~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 356 (488)
|.+ ..+| .++++++|++|++.+|.+.. .+ . ...+..+++|+.|+
T Consensus 103 N~l-~~l~-~~~~l~~L~~L~l~~N~i~~-----~~-~----------------------------~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 103 NQI-ASLS-GIEKLVNLRVLYMSNNKITN-----WG-E----------------------------IDKLAALDKLEDLL 146 (198)
T ss_dssp EEC-CCHH-HHHHHHHSSEEEESEEECCC-----HH-H----------------------------HHHHTTTTTCSEEE
T ss_pred CcC-CcCC-ccccCCCCCEEECCCCcCCc-----hh-H----------------------------HHHHhcCCCCCEEE
Confidence 984 4455 68889999999998886553 00 0 12455667788888
Q ss_pred ecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150 357 LWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE 392 (488)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 392 (488)
+++|.+.+..+.. +.........+..+++|+.|+
T Consensus 147 l~~N~l~~~~~~~--~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 147 LAGNPLYNDYKEN--NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ECSCHHHHHHHTT--TTHHHHHHHHHHHCSSCSEEC
T ss_pred ecCCccccccccc--cchHHHHHHHHHhCCCcEEEC
Confidence 8888764332100 000011122356677888775
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=101.57 Aligned_cols=125 Identities=13% Similarity=0.117 Sum_probs=86.7
Q ss_pred eeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhh
Q 038150 160 HLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETL 239 (488)
Q Consensus 160 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i 239 (488)
.+.+..+....+|..+ .+++++|++.+| .+. .+|..|..+++|++|+|++|. +..+ .|..+
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n-~i~--~ip~~~~~l~~L~~L~Ls~N~------i~~i--------~~~~f 74 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDGN-QFT--LVPKELSNYKHLTLIDLSNNR------ISTL--------SNQSF 74 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCSS-CCC--SCCGGGGGCTTCCEEECCSSC------CCCC--------CTTTT
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCCC-cCc--hhHHHhhcccCCCEEECCCCc------CCEe--------CHhHc
Confidence 4455555556676554 367888888887 454 344567888888888888888 4422 23457
Q ss_pred hhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCC-CCCCcccccccCceeecCC
Q 038150 240 CELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFHVSAG 304 (488)
Q Consensus 240 ~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~ 304 (488)
.++++|++|++++|......|..+..+++|++|++++|.+. .+|. .+..+++|++|++.+|...
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 78888888888887633333446788888888888888844 4554 4778888888888777543
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.05 E-value=4.2e-10 Score=98.11 Aligned_cols=127 Identities=13% Similarity=0.019 Sum_probs=83.7
Q ss_pred ceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCC
Q 038150 208 RALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGI 287 (488)
Q Consensus 208 r~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i 287 (488)
++++++++. +..+|. .+. .+|++|++++|. +..+|..+..+++|++|++++|.+....+..+
T Consensus 13 ~~l~~~~~~------l~~ip~---------~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f 74 (193)
T 2wfh_A 13 TVVRCSNKG------LKVLPK---------GIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74 (193)
T ss_dssp TEEECTTSC------CSSCCS---------CCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred CEEEcCCCC------CCcCCC---------CCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHc
Confidence 577888877 554443 221 468888888865 66788888888888888888888554444567
Q ss_pred CCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhh
Q 038150 288 GRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEG 367 (488)
Q Consensus 288 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (488)
.++++|++|++++|.+.. ++ +..+..+++|+.|++++|.+...
T Consensus 75 ~~l~~L~~L~Ls~N~l~~-----------------------------i~------~~~f~~l~~L~~L~L~~N~l~~~-- 117 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRC-----------------------------IP------PRTFDGLKSLRLLSLHGNDISVV-- 117 (193)
T ss_dssp TTCTTCCEEECCSSCCCB-----------------------------CC------TTTTTTCTTCCEEECCSSCCCBC--
T ss_pred cCCCCCCEEECCCCccCE-----------------------------eC------HHHhCCCCCCCEEECCCCCCCee--
Confidence 888888888887765443 00 02344566677777777766321
Q ss_pred hhccccchHHHhhhCCCCCCCCEEEeccccCC
Q 038150 368 ERRKNEDNQLLLEALRPPLNLKELEIEYYRGN 399 (488)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 399 (488)
.+..+..+++|+.|++++|.+.
T Consensus 118 ----------~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 118 ----------PEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ----------CTTTTTTCTTCCEEECCSSCEE
T ss_pred ----------ChhhhhcCccccEEEeCCCCee
Confidence 1234566777778877776554
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=3.2e-10 Score=97.45 Aligned_cols=126 Identities=22% Similarity=0.282 Sum_probs=91.9
Q ss_pred eeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCch-
Q 038150 159 RHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE- 237 (488)
Q Consensus 159 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~- 237 (488)
+.+.+..+....+|..+ .++|++|++.+| .+.. ..+..|..+++|++|++++|. +. .+|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~------l~---------~~~~~ 70 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESN-KLQS-LPHGVFDKLTQLTKLSLSQNQ------IQ---------SLPDG 70 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSC------CC---------CCCTT
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCC-cccE-eCHHHhcCcccccEEECCCCc------ce---------EeChh
Confidence 34555555566676543 478999999987 4554 455557888999999999998 44 3333
Q ss_pred hhhhhccCcEeecCCCCCcccCchh-hccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecCCC
Q 038150 238 TLCELYNLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 238 ~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~ 305 (488)
.++.+++|++|++++|. +..+|.. ++.+++|++|++++|.+. .+|.. +.++++|++|++.+|.+..
T Consensus 71 ~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence 35788999999999976 5555554 688999999999998854 55554 5788999999988886654
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1.3e-09 Score=103.70 Aligned_cols=252 Identities=15% Similarity=0.119 Sum_probs=130.0
Q ss_pred ccCcceecccccchhhhhhHHHHHhc-CCccceeecCCCcccc-cccCCcccc-cccCc---cCc-hhhhh--------h
Q 038150 178 VKRMRTLLINDHSLLNAAILEELFRE-LTSLRALDFGGSYHST-RLLTPEVPR-NIEKL---VLP-ETLCE--------L 242 (488)
Q Consensus 178 ~~~Lr~L~l~~~~~~~~~~~~~~~~~-l~~Lr~L~Ls~~~~~~-~~~~~~lp~-~i~~l---~lp-~~i~~--------L 242 (488)
+.+++.|.+.++ +....+.. +.. +++|++|||++|.+.. ....+.+|. .+..+ .+| ..+.+ +
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~-l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRH-LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHH-HHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEecc--ccHHHHHH-HHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccccc
Confidence 677888888774 22212332 444 7888899988887410 000001111 00000 222 23345 7
Q ss_pred ccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCC
Q 038150 243 YNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNL 321 (488)
Q Consensus 243 ~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 321 (488)
.+|+.|++.. . +..++. .+..+++|+.|++..+.....-+..+..+.++..+.............-..... ..+
T Consensus 101 ~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f---~~~ 175 (329)
T 3sb4_A 101 QTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF---IEG 175 (329)
T ss_dssp TTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE---EES
T ss_pred CCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccc---ccc
Confidence 8888888877 3 555543 477888888888888764333334466666666555433110000000000001 111
Q ss_pred Ccccc-cccccccCCC---------------------ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh
Q 038150 322 EHLQV-CGISRLGDVS---------------------DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL 379 (488)
Q Consensus 322 ~~L~~-L~~~~~~~~~---------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 379 (488)
..|+. +.+.....++ -...........+++|+.++++.|.+... -.
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I------------~~ 243 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI------------PD 243 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE------------CT
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee------------cH
Confidence 11220 1111000000 00000111112367888888888766322 12
Q ss_pred hhCCCCCCCCEEEeccccCCCCCchHHHhccCCc-EEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCccc
Q 038150 380 EALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLK-SLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDEF 453 (488)
Q Consensus 380 ~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~-~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~ 453 (488)
..+..+++|+.|.+.++ +...-+..+..+++|+ .+.+.+ ..+.++. +..+++|+.|++..+. ++.++...
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~a 316 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDEL 316 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTT
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhh
Confidence 45777888888888876 4442344567788888 888877 3455543 7788888888886554 77776543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=2.8e-09 Score=91.53 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=18.4
Q ss_pred CCCCCCCEEEeccccCCCCCchH-HHhccCCcEEeecCCCC
Q 038150 383 RPPLNLKELEIEYYRGNTVFPSW-MTSLTNLKSLDLSSCEN 422 (488)
Q Consensus 383 ~~~~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 422 (488)
..+++|+.|++++|.+.. +|.. +..+++|++|++++|+.
T Consensus 97 ~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 97 DKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred hCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCe
Confidence 344455555555554444 3332 24455555555555543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=1.7e-09 Score=92.46 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=30.5
Q ss_pred hhhhhccCcEeecCCCCCcccCchh-hccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecC
Q 038150 238 TLCELYNLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSA 303 (488)
Q Consensus 238 ~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~ 303 (488)
.++++++|++|++++|. +..+|.. +.++++|++|++++|.+ ..+|.. ++++++|++|++.+|.+
T Consensus 52 ~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 52 VFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCB
T ss_pred HhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCcc-ceeCHHHhccccCCCEEEeCCCCc
Confidence 44455555555555543 3444433 24555555555555542 233332 45555555555555443
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=9.7e-10 Score=106.05 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=33.7
Q ss_pred hcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC----CchHHHhccCCcEEeecCC
Q 038150 345 ELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV----FPSWMTSLTNLKSLDLSSC 420 (488)
Q Consensus 345 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~ 420 (488)
.+..+++|+.|++++|.+.... ...+...+..+++|+.|+|++|.+... ++..+...++|++|+|++|
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g--------~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEG--------LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHH--------HHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHhcCCCcCEEeCCCCCCCcHH--------HHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3344455555555555554221 133344444455566666665554421 2222334455666666665
Q ss_pred CC
Q 038150 421 EN 422 (488)
Q Consensus 421 ~~ 422 (488)
.+
T Consensus 250 ~i 251 (372)
T 3un9_A 250 EL 251 (372)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.77 E-value=1.7e-09 Score=104.32 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=38.4
Q ss_pred hhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150 341 AKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT 400 (488)
Q Consensus 341 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 400 (488)
.+...+...++|+.|++++|.+..... ..+...+...++|+.|+|++|.+..
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~--------~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAGDTAA--------LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCCHHHH--------HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhcCCCcCeEECCCCCCCHHHH--------HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 345667778889999999998864321 4555666677889999999988765
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=1.8e-08 Score=95.78 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=52.3
Q ss_pred CCCCCEEEeccccCCCCCc-hHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcC-eeeecccccceeeCccc
Q 038150 385 PLNLKELEIEYYRGNTVFP-SWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLE-NLHIWRMESVKRVGDEF 453 (488)
Q Consensus 385 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~-~L~l~~~~~l~~~~~~~ 453 (488)
+++|+.|+|++|.+.. +| ..+..+++|+.|++.++ ...++. +..+++|+ .+.+.+ .++.++...
T Consensus 225 ~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp CTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred cCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh
Confidence 6899999999988887 54 45778999999999887 566664 88899999 999977 578887654
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.69 E-value=2.6e-08 Score=85.05 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=53.6
Q ss_pred CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchH-HHhccCCcEEeecCCCCCCCCCC
Q 038150 350 KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSW-MTSLTNLKSLDLSSCENCEQLPP 428 (488)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~ 428 (488)
++|+.|++++|.+.+ ..+..+..+++|+.|+|++|.+.. +|.. +..+++|++|++++|.+....+.
T Consensus 33 ~~L~~L~Ls~N~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK------------LEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp TTCSEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEeCCCCccc------------cCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCccceeCHH
Confidence 667777777776642 224556667777777777777766 5443 46677777777777765543333
Q ss_pred -CCCCCCcCeeeecccc
Q 038150 429 -LGKLQSLENLHIWRME 444 (488)
Q Consensus 429 -l~~l~~L~~L~l~~~~ 444 (488)
++.+++|++|++++|+
T Consensus 100 ~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTCTTCSEEECCSSC
T ss_pred HhccccCCCEEEeCCCC
Confidence 6677777777777765
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=2.8e-08 Score=84.54 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-
Q 038150 350 KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP- 428 (488)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~- 428 (488)
++|+.|++++|.+.. ..+..+..+++|+.|+|++|.+....|..+..+++|++|++++|.+....+.
T Consensus 30 ~~l~~L~L~~N~i~~------------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 97 (170)
T 3g39_A 30 TTTQVLYLYDNQITK------------LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97 (170)
T ss_dssp TTCSEEECCSSCCCC------------CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEcCCCcCCc------------cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHH
Confidence 566667777666532 1244566666777777777666652233345666777777776664443333
Q ss_pred CCCCCCcCeeeecccc
Q 038150 429 LGKLQSLENLHIWRME 444 (488)
Q Consensus 429 l~~l~~L~~L~l~~~~ 444 (488)
++.+++|++|++++|+
T Consensus 98 ~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEEeCCCC
Confidence 6666777777776665
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=1.2e-08 Score=86.81 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=64.0
Q ss_pred cceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCc
Q 038150 181 MRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELP 260 (488)
Q Consensus 181 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp 260 (488)
.++++++++ .+.. +|..+ .+.|++|+|++|. +.. ..|..++.+++|++|++++|. +..+|
T Consensus 11 ~~~l~~s~n-~l~~--ip~~~--~~~l~~L~L~~N~------i~~--------~~~~~~~~l~~L~~L~Ls~N~-l~~l~ 70 (170)
T 3g39_A 11 GTTVDCSGK-SLAS--VPTGI--PTTTQVLYLYDNQ------ITK--------LEPGVFDRLTQLTRLDLDNNQ-LTVLP 70 (170)
T ss_dssp TTEEECTTS-CCSS--CCSCC--CTTCSEEECCSSC------CCC--------CCTTTTTTCTTCSEEECCSSC-CCCCC
T ss_pred CCEEEeCCC-CcCc--cCccC--CCCCcEEEcCCCc------CCc--------cChhhhcCcccCCEEECCCCC-cCccC
Confidence 356666665 3432 33222 3667777777777 331 224456677777777777765 55555
Q ss_pred hh-hccccccceeeccCCCCCCCCCC-CCCCcccccccCceeecCCC
Q 038150 261 EG-IGKLINVKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 261 ~~-l~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~ 305 (488)
.. +..+++|++|++++|.+. .+|. .++++++|++|++.+|.+..
T Consensus 71 ~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 71 AGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred hhhccCCCCCCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 44 467777777777777743 3443 47777777777777776543
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=1.4e-07 Score=90.22 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=35.2
Q ss_pred cCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC----CchHHHhccCCcEEeecCCCC
Q 038150 348 KKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV----FPSWMTSLTNLKSLDLSSCEN 422 (488)
Q Consensus 348 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~ 422 (488)
.+++|+.|.+.+|.+..... ..+ .....+++|+.|+|+.|.+... ++..+..+++|+.|++++|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~--------~~l-a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVV--------EMF-LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHH--------HHH-HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHH--------HHH-HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 35667777776666542210 111 1123456777777766655431 222334567777777776653
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=6.6e-08 Score=92.47 Aligned_cols=200 Identities=20% Similarity=0.149 Sum_probs=117.2
Q ss_pred HHHHhcCCccceeecCCCcccccccCCcccc-cccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccC
Q 038150 198 EELFRELTSLRALDFGGSYHSTRLLTPEVPR-NIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRG 276 (488)
Q Consensus 198 ~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~-~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~ 276 (488)
...+.++++|+.|.+..... ..... .+..-.++..+..+++|+.|++++|... .+|. + .+++|++|.+..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~------e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~ 202 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDF------EEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIIS 202 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCT------TTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEEC
T ss_pred HHhhhhcchhhheeecCcch------hhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEec
Confidence 33456788999998865431 10000 0000035566778899999999987432 4444 4 388999999988
Q ss_pred CCCCCCCCCCC--CCcccccccCceee--cCCCCCCCCcccCccc-c--cCCCcccccccccccCCCChhhhhHhhcccC
Q 038150 277 TNSLRYMPVGI--GRLTGLRTLGEFHV--SAGGGVDGRKACRLES-L--KNLEHLQVCGISRLGDVSDVGEAKRLELDKK 349 (488)
Q Consensus 277 ~~~~~~lp~~i--~~L~~L~~L~l~~~--~~~~~~~~~~~~~~~~-l--~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l 349 (488)
|.+.......+ ..+++|++|+++.+ ...+.. ....+.. + ..+++|+.|.+..+........++ .....+
T Consensus 203 ~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~---~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-a~a~~~ 278 (362)
T 2ra8_A 203 GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG---DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF-LESDIL 278 (362)
T ss_dssp SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS---CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH-HHCSSG
T ss_pred CCCChHHHHHHHHccCCCCcEEEEeccccccccch---hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH-HhCccC
Confidence 76432221223 37899999988532 111100 0111111 1 347888888886544321111222 222457
Q ss_pred CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccC--CcEEeecCCC
Q 038150 350 KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTN--LKSLDLSSCE 421 (488)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~--L~~L~l~~~~ 421 (488)
++|+.|+++.|.+.... ...++..+..+++|+.|+|++|.+.. ..+..+.. ...++++.+.
T Consensus 279 ~~L~~LdLs~n~L~d~G--------~~~L~~~L~~l~~L~~L~L~~n~i~d---~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEG--------ARLLLDHVDKIKHLKFINMKYNYLSD---EMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp GGCSEEECCSSCCBHHH--------HHHHHTTHHHHTTCSEEECCSBBCCH---HHHHHHHHHCCSEEECCSBC
T ss_pred CCCCEEECCCCCCChHH--------HHHHHhhcccCCcceEEECCCCcCCH---HHHHHHHHHcCCEEEecCCc
Confidence 89999999999876432 14455556678899999999997664 22333332 3567777665
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.37 E-value=1.8e-07 Score=89.47 Aligned_cols=95 Identities=21% Similarity=0.160 Sum_probs=55.0
Q ss_pred cCCcCccccccccCcceecccc-cchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccC
Q 038150 167 KAASLPISTLRVKRMRTLLIND-HSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNL 245 (488)
Q Consensus 167 ~~~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L 245 (488)
....+|. +..+.+|++|++++ | .+.. ..+..|..+++|++|+|++|.+ .. ..|..+++|++|
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n-~l~~-~~~~~~~~l~~L~~L~l~~N~l------~~--------~~~~~~~~l~~L 82 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQ-HLQH-LELRDLRGLGELRNLTIVKSGL------RF--------VAPDAFHFTPRL 82 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCS-SCCE-ECGGGSCSCCCCSEEECCSSCC------CE--------ECTTGGGSCSCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCC-CCCC-cChhHhccccCCCEEECCCCcc------ce--------eCHHHhcCCcCC
Confidence 3455666 66666677777765 4 4443 4444566677777777777763 31 223345666677
Q ss_pred cEeecCCCCCcccCchhhccccccceeeccCCCC
Q 038150 246 EKLDISDCFNLKELPEGIGKLINVKHLLNRGTNS 279 (488)
Q Consensus 246 ~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~ 279 (488)
++|+|++|. +..+|..+.....|++|++.+|.+
T Consensus 83 ~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 83 SRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CEEeCCCCc-cceeCHHHcccCCceEEEeeCCCc
Confidence 777777754 455555443333367777766653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.36 E-value=3e-07 Score=87.93 Aligned_cols=104 Identities=14% Similarity=-0.029 Sum_probs=78.7
Q ss_pred eecccccchhhhhhHHHHHhcCCccceeecCC-CcccccccCCcccccccCccCc-hhhhhhccCcEeecCCCCCcccCc
Q 038150 183 TLLINDHSLLNAAILEELFRELTSLRALDFGG-SYHSTRLLTPEVPRNIEKLVLP-ETLCELYNLEKLDISDCFNLKELP 260 (488)
Q Consensus 183 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~-~~~~~~~~~~~lp~~i~~l~lp-~~i~~L~~L~~L~l~~~~~~~~lp 260 (488)
.+++.+++.+. .+|. +..+.+|++|+|++ |. +. .+| ..++.|.+|++|+|++|......|
T Consensus 12 ~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~------l~---------~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 12 GLRCTRDGALD--SLHH-LPGAENLTELYIENQQH------LQ---------HLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp CEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSS------CC---------EECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred EEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCC------CC---------CcChhHhccccCCCEEECCCCccceeCH
Confidence 45666643565 4677 89999999999996 87 55 333 568899999999999987444455
Q ss_pred hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150 261 EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG 305 (488)
Q Consensus 261 ~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~ 305 (488)
..+++|++|++|++++|.+ ..+|..+....+|+.|++.+|.+..
T Consensus 74 ~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp TGGGSCSCCCEEECCSSCC-SCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred HHhcCCcCCCEEeCCCCcc-ceeCHHHcccCCceEEEeeCCCccC
Confidence 6789999999999999995 5666554333349999998887654
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=1.6e-07 Score=79.08 Aligned_cols=89 Identities=11% Similarity=0.138 Sum_probs=62.0
Q ss_pred CCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC-CCchHHHhc----cCCcEEeecCCCCC
Q 038150 349 KKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT-VFPSWMTSL----TNLKSLDLSSCENC 423 (488)
Q Consensus 349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~lp~~~~~l----~~L~~L~l~~~~~~ 423 (488)
-.+|+.|+++++.++ ..-...+..+++|++|+|++|...+ .--..+..+ ++|++|+|++|...
T Consensus 60 ~~~L~~LDLs~~~It------------d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 60 KYKIQAIDATDSCIM------------SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCCEEEEEEESCCCC------------GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred CceEeEEeCcCCCcc------------HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 446888999988765 2334556788899999999886432 112233332 46889999998866
Q ss_pred CC--CCCCCCCCCcCeeeecccccceee
Q 038150 424 EQ--LPPLGKLQSLENLHIWRMESVKRV 449 (488)
Q Consensus 424 ~~--~~~l~~l~~L~~L~l~~~~~l~~~ 449 (488)
++ +..+..+++|++|++++|+.++..
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred CHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 65 333677889999999999877664
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.20 E-value=3.8e-06 Score=81.64 Aligned_cols=226 Identities=12% Similarity=0.142 Sum_probs=125.0
Q ss_pred cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCC
Q 038150 175 TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCF 254 (488)
Q Consensus 175 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~ 254 (488)
|.++ +|+.+.+..+ +.. .....|.++ .|+.+.+.. . +..++. ..+.++.+|+.+++..|.
T Consensus 132 F~~~-~L~~i~l~~~--i~~-I~~~aF~~~-~L~~i~lp~-~------l~~I~~--------~aF~~c~~L~~l~l~~n~ 191 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG--LKS-IGDMAFFNS-TVQEIVFPS-T------LEQLKE--------DIFYYCYNLKKADLSKTK 191 (401)
T ss_dssp TTTC-CCSEEECCTT--CCE-ECTTTTTTC-CCCEEECCT-T------CCEECS--------STTTTCTTCCEEECTTSC
T ss_pred cccC-CccEEEeCCC--ccE-ECHHhcCCC-CceEEEeCC-C------ccEehH--------HHhhCcccCCeeecCCCc
Confidence 3443 6777777654 332 223345553 577777765 2 332221 346677888888887743
Q ss_pred CcccCchhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccc-cc
Q 038150 255 NLKELPEGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS-RL 332 (488)
Q Consensus 255 ~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~-~~ 332 (488)
+..+|...-...+|+.+.+..+ ...++ ..+.++++|+.+.+..+ ... .+. ..+.+ .+|+.+.+. .+
T Consensus 192 -l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~-----I~~--~aF~~-~~L~~i~lp~~i 259 (401)
T 4fdw_A 192 -ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VST-----IGQ--EAFRE-SGITTVKLPNGV 259 (401)
T ss_dssp -CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCE-----ECT--TTTTT-CCCSEEEEETTC
T ss_pred -ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccC-----ccc--ccccc-CCccEEEeCCCc
Confidence 5666655444577888888754 34444 34677778887776542 110 000 11111 234444431 12
Q ss_pred cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCC
Q 038150 333 GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNL 412 (488)
Q Consensus 333 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L 412 (488)
..++. ..+.++++|+.+.+..+...... ...--...+..+++|+.+.|... +...-...+..+++|
T Consensus 260 ~~I~~------~aF~~c~~L~~l~l~~~~~~~~~-------~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 260 TNIAS------RAFYYCPELAEVTTYGSTFNDDP-------EAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKV 325 (401)
T ss_dssp CEECT------TTTTTCTTCCEEEEESSCCCCCT-------TCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSC
T ss_pred cEECh------hHhhCCCCCCEEEeCCccccCCc-------ccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCc
Confidence 22221 45677888888888776542000 00011245677888888888743 333123456677888
Q ss_pred cEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeC
Q 038150 413 KSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVG 450 (488)
Q Consensus 413 ~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~ 450 (488)
+.+.|..+ +..+.. +..+ +|+.+.+.++. +..++
T Consensus 326 ~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~ 361 (401)
T 4fdw_A 326 TQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVF 361 (401)
T ss_dssp CEEEECTT--CCEECTTSSSSS-CCCEEEECCSS-CCBCC
T ss_pred cEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-Ccccc
Confidence 88888654 444443 6667 88888887764 33443
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=4e-07 Score=76.62 Aligned_cols=87 Identities=18% Similarity=0.104 Sum_probs=62.9
Q ss_pred cccccccccccCCCChhhhhHhhcccCCCCCceeecccC-chhhhhhhccccchHHHhhhCCCC----CCCCEEEecccc
Q 038150 323 HLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDK-EEEEEGERRKNEDNQLLLEALRPP----LNLKELEIEYYR 397 (488)
Q Consensus 323 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~ 397 (488)
+|+.|+++.+. +.+ .-...+.++++|+.|++++|. ++ ......+..+ ++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~-Itd---~GL~~L~~~~~L~~L~L~~C~~It------------D~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 62 KIQAIDATDSC-IMS---IGFDHMEGLQYVEKIRLCKCHYIE------------DGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CEEEEEEESCC-CCG---GGGGGGTTCSCCCEEEEESCTTCC------------HHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred eEeEEeCcCCC-ccH---HHHHHhcCCCCCCEEEeCCCCccC------------HHHHHHHHhcccccCCCCEEEcCCCC
Confidence 57888888876 443 334567899999999999996 43 3334445443 479999999996
Q ss_pred C-CCCCchHHHhccCCcEEeecCCCCCCC
Q 038150 398 G-NTVFPSWMTSLTNLKSLDLSSCENCEQ 425 (488)
Q Consensus 398 ~-~~~lp~~~~~l~~L~~L~l~~~~~~~~ 425 (488)
. +..--..+..+++|++|+|++|+..++
T Consensus 126 ~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 126 NVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 4 331233456889999999999987765
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.01 E-value=2.7e-05 Score=75.65 Aligned_cols=222 Identities=12% Similarity=0.127 Sum_probs=137.0
Q ss_pred ccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc
Q 038150 178 VKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK 257 (488)
Q Consensus 178 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~ 257 (488)
+..+..+.+-.. +.. .....|.++ +|+.+.+..+ +..++. ..+.+ .+|+.+.+.. + +.
T Consensus 112 ~~~l~~i~ip~~--i~~-I~~~aF~~~-~L~~i~l~~~-------i~~I~~--------~aF~~-~~L~~i~lp~-~-l~ 169 (401)
T 4fdw_A 112 LKGYNEIILPNS--VKS-IPKDAFRNS-QIAKVVLNEG-------LKSIGD--------MAFFN-STVQEIVFPS-T-LE 169 (401)
T ss_dssp CSSCSEEECCTT--CCE-ECTTTTTTC-CCSEEECCTT-------CCEECT--------TTTTT-CCCCEEECCT-T-CC
T ss_pred cCCccEEEECCc--cCE-ehHhhcccC-CccEEEeCCC-------ccEECH--------HhcCC-CCceEEEeCC-C-cc
Confidence 466666666553 332 333446664 6888888665 232221 22334 3688998886 3 44
Q ss_pred cCc-hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccc-cccCC
Q 038150 258 ELP-EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS-RLGDV 335 (488)
Q Consensus 258 ~lp-~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~-~~~~~ 335 (488)
.++ ..+..+.+|+.+++..|. ...++...-...+|+.+.+..+ ... -.-..+.++.+|+.+.+. .+..+
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~-------I~~~aF~~~~~L~~l~l~~~l~~I 240 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKE-------IGSQAFLKTSQLKTIEIPENVSTI 240 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCE-------ECTTTTTTCTTCCCEECCTTCCEE
T ss_pred EehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hhe-------ehhhHhhCCCCCCEEecCCCccCc
Confidence 444 467889999999999877 5566655434678888876432 111 011234455666666553 22222
Q ss_pred CChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCC-----CCCchHHHhcc
Q 038150 336 SDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN-----TVFPSWMTSLT 410 (488)
Q Consensus 336 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~lp~~~~~l~ 410 (488)
.. ..+.+ .+|+.+.+..+ +. .--...+..+++|+.+.+.++... ..-+..+..++
T Consensus 241 ~~------~aF~~-~~L~~i~lp~~-i~------------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 241 GQ------EAFRE-SGITTVKLPNG-VT------------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp CT------TTTTT-CCCSEEEEETT-CC------------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred cc------ccccc-CCccEEEeCCC-cc------------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 21 23334 67888888443 21 111356788999999999887654 21345677899
Q ss_pred CCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCcccc
Q 038150 411 NLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDEFL 454 (488)
Q Consensus 411 ~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~ 454 (488)
+|+.+.+.++ ...++. +..+++|+.+.|..+ ++.++...+
T Consensus 301 ~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF 342 (401)
T 4fdw_A 301 KLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAF 342 (401)
T ss_dssp TCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSS
T ss_pred cCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhC
Confidence 9999999853 555554 788999999999543 777766543
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=1.1e-05 Score=73.01 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=72.7
Q ss_pred cccCcce--ecccccc--hhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCC
Q 038150 177 RVKRMRT--LLINDHS--LLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISD 252 (488)
Q Consensus 177 ~~~~Lr~--L~l~~~~--~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~ 252 (488)
..+.|+. +++..|. .+.. .++....++++|+.|+|++|. +..++ .+|..++.+++|++|+|++
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~-~l~i~~~~l~~L~~L~Ls~N~------l~~l~------~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAA-TLRIIEENIPELLSLNLSNNR------LYRLD------DMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHH-HHHHHHHHCTTCCEEECTTSC------CCCCG------GGTTHHHHSTTCCEEECTT
T ss_pred CCcchhhcCccccCCHHHHHHH-HHHHHHhhCCCCCEEECCCCC------CCCCc------cchhHHhhCCCCCEEECCC
Confidence 3444554 4555541 1222 333334679999999999999 44332 3556788999999999999
Q ss_pred CCCcccCchhhcccc--ccceeeccCCCCCCCCCC-------CCCCcccccccCce
Q 038150 253 CFNLKELPEGIGKLI--NVKHLLNRGTNSLRYMPV-------GIGRLTGLRTLGEF 299 (488)
Q Consensus 253 ~~~~~~lp~~l~~L~--~L~~L~l~~~~~~~~lp~-------~i~~L~~L~~L~l~ 299 (488)
|. +..+ ..+..+. +|++|++.+|.+...+|. .+..+++|+.|+..
T Consensus 206 N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 206 NE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp SC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred Cc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 76 5554 3455555 899999999986665552 25677888877653
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=5.7e-06 Score=71.13 Aligned_cols=94 Identities=22% Similarity=0.130 Sum_probs=44.6
Q ss_pred hhhhHhhcccCCCCCceeeccc-CchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC----CchHHHhccCCc
Q 038150 339 GEAKRLELDKKKYLSSLTLWFD-KEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV----FPSWMTSLTNLK 413 (488)
Q Consensus 339 ~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~ 413 (488)
.+.+...+...+.|+.|++++| .+.... ...+...+...++|++|+|++|.+... +...+...++|+
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g--------~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~ 96 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPT--------LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHH--------HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHH--------HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC
Confidence 3444455555555666666655 543221 133444455555566666665554321 122233345566
Q ss_pred EEeecCCCCCCC----CC-CCCCCCCcCeeee
Q 038150 414 SLDLSSCENCEQ----LP-PLGKLQSLENLHI 440 (488)
Q Consensus 414 ~L~l~~~~~~~~----~~-~l~~l~~L~~L~l 440 (488)
+|+|++|.+... +. .+...++|++|++
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 666665553322 11 1344455666666
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.55 E-value=1.9e-05 Score=67.86 Aligned_cols=70 Identities=20% Similarity=0.101 Sum_probs=34.8
Q ss_pred hhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEe--ccccCCCC----CchHHHhccCCcEEee
Q 038150 344 LELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEI--EYYRGNTV----FPSWMTSLTNLKSLDL 417 (488)
Q Consensus 344 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~~~~----lp~~~~~l~~L~~L~l 417 (488)
..+...++|+.|++++|.+.... ...+...+...++|+.|+| ++|.+... +...+...++|++|++
T Consensus 87 ~~L~~n~~L~~L~L~~N~i~~~g--------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 87 EMLKVNNTLKSLNVESNFISGSG--------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp HHHHHCSSCCEEECCSSCCCHHH--------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHhCCCcCEEECcCCcCCHHH--------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEec
Confidence 34444556666666666654321 1334455555556666666 44544421 1122233455566655
Q ss_pred cCCC
Q 038150 418 SSCE 421 (488)
Q Consensus 418 ~~~~ 421 (488)
++|.
T Consensus 159 ~~n~ 162 (185)
T 1io0_A 159 HFTQ 162 (185)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 5554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.36 E-value=0.00017 Score=65.34 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=61.5
Q ss_pred ccccCcceecccccchhhh-hhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhc--cCcEeecCC
Q 038150 176 LRVKRMRTLLINDHSLLNA-AILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELY--NLEKLDISD 252 (488)
Q Consensus 176 ~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~--~L~~L~l~~ 252 (488)
.++++|++|++++| .+.. ..++..+..+++|++|+|++|. +..+ ..+..+. +|++|++++
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~------i~~~----------~~l~~l~~l~L~~L~L~~ 229 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE------LKSE----------RELDKIKGLKLEELWLDG 229 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC------CCSG----------GGGGGGTTSCCSEEECTT
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc------cCCc----------hhhhhcccCCcceEEccC
Confidence 45789999999998 4432 1245667899999999999999 4322 3445555 999999999
Q ss_pred CCCcccCc-------hhhccccccceeecc
Q 038150 253 CFNLKELP-------EGIGKLINVKHLLNR 275 (488)
Q Consensus 253 ~~~~~~lp-------~~l~~L~~L~~L~l~ 275 (488)
|.....+| ..+..+++|+.|+-.
T Consensus 230 Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 230 NSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp STTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 88655555 236788999998653
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.24 E-value=0.0019 Score=62.50 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=42.9
Q ss_pred hCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCccc
Q 038150 381 ALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDEF 453 (488)
Q Consensus 381 ~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~ 453 (488)
.+..+.+|+.+.+..+ ....-...+..+.+|+.++|... .+.+.. +..+.+|+.+.+... ++.++...
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~a 361 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANA 361 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHH
Confidence 3456677888887654 22212334567788888888643 445543 677888888888543 66776543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.70 E-value=0.0022 Score=62.08 Aligned_cols=215 Identities=11% Similarity=0.103 Sum_probs=123.0
Q ss_pred ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCC
Q 038150 174 STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDC 253 (488)
Q Consensus 174 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~ 253 (488)
.|.+|++|+.+.+..+ +.. .....|..+..|+.+.+..+- ..++ ...+.++..|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~--~~~-I~~~~F~~c~~L~~i~l~~~~-------~~I~--------~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--MET-LHNGLFSGCGKLKSIKLPRNL-------KIIR--------DYCFAECILLENMEFPNS 218 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCE-ECTTTTTTCTTCCBCCCCTTC-------CEEC--------TTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCc--cce-eccccccCCCCceEEEcCCCc-------eEeC--------chhhccccccceeecCCC
Confidence 5678899999998764 222 333557888999999887652 2111 123556777777776653
Q ss_pred CCcccCchhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccc
Q 038150 254 FNLKELPEGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL 332 (488)
Q Consensus 254 ~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~ 332 (488)
. ..+........+|+.+.+.... ..+. ..+..+.+|+.+.+..+... -..........+........
T Consensus 219 ~--~~i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~--------i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 219 L--YYLGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR--------IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp C--CEECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE--------ECSCTTTTCTTCCEEEECSS
T ss_pred c--eEeehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce--------eeccccccccccceeccCce
Confidence 2 2222333344677777776542 2222 33556677776655432110 00111222333333222211
Q ss_pred cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHH-hhhCCCCCCCCEEEeccccCCCCCchHHHhccC
Q 038150 333 GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLL-LEALRPPLNLKELEIEYYRGNTVFPSWMTSLTN 411 (488)
Q Consensus 333 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~ 411 (488)
. ++. ..+..+.+|+.+.+..+ + ..+ ...+..+.+|+.+.|... ....-...+..+.+
T Consensus 287 ~-i~~------~~F~~~~~L~~i~l~~~-i-------------~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 287 I-VPE------KTFYGCSSLTEVKLLDS-V-------------KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS 344 (394)
T ss_dssp E-ECT------TTTTTCTTCCEEEECTT-C-------------CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred e-ecc------ccccccccccccccccc-c-------------ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence 1 111 34556778888887544 2 111 235677889999998653 33312445668899
Q ss_pred CcEEeecCCCCCCCCCC--CCCCCCcCeeeecc
Q 038150 412 LKSLDLSSCENCEQLPP--LGKLQSLENLHIWR 442 (488)
Q Consensus 412 L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~ 442 (488)
|+.+.+..+ ++.+.. +..+++|+.+++..
T Consensus 345 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 345 LSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 999999755 455553 78899999998854
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.37 E-value=0.0074 Score=58.27 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=23.3
Q ss_pred CCCCCCCCEEEeccccCCCCCc-hHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeee
Q 038150 382 LRPPLNLKELEIEYYRGNTVFP-SWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHI 440 (488)
Q Consensus 382 ~~~~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l 440 (488)
+..+++|+.+.+... ... ++ ..+..+.+|+.+.|..+ .+.+.. +..+.+|+.+.|
T Consensus 284 F~~c~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 284 FMNCPALQDIEFSSR-ITE-LPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccccCCCc-ccc-cCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEE
Confidence 334455555555321 111 21 22334455555555432 233322 444555555555
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.20 E-value=0.2 Score=48.12 Aligned_cols=83 Identities=12% Similarity=0.144 Sum_probs=55.1
Q ss_pred hcccCCCCCceeecccCchhhhhhhccccchHHH-hhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCC
Q 038150 345 ELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLL-LEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENC 423 (488)
Q Consensus 345 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 423 (488)
.+.++..|+.+.+... + ..+ ...+..+.+|+.+.|..+ ....-...+..+.+|+.+.|..+ .
T Consensus 283 aF~~c~~L~~i~l~~~-i-------------~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v 345 (394)
T 4gt6_A 283 AFMNCPALQDIEFSSR-I-------------TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--V 345 (394)
T ss_dssp TTTTCTTCCEEECCTT-C-------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--C
T ss_pred ccccccccccccCCCc-c-------------cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--c
Confidence 3455666776666432 1 111 234677889999999754 22212345678899999999654 5
Q ss_pred CCCCC--CCCCCCcCeeeecccc
Q 038150 424 EQLPP--LGKLQSLENLHIWRME 444 (488)
Q Consensus 424 ~~~~~--l~~l~~L~~L~l~~~~ 444 (488)
+.+.. +..+++|+.+++.+..
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEhHhHhhCCCCCCEEEECCce
Confidence 56654 7889999999997754
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.12 E-value=0.02 Score=48.85 Aligned_cols=72 Identities=13% Similarity=-0.000 Sum_probs=42.5
Q ss_pred hhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC---CC----CCchHHHhccCCc
Q 038150 341 AKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG---NT----VFPSWMTSLTNLK 413 (488)
Q Consensus 341 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~----~lp~~~~~l~~L~ 413 (488)
++...+..-+.|+.|++++|.+.... ...+.+.+..-+.|+.|.|+++.. .. .+-..+..-+.|+
T Consensus 89 alA~aL~~N~tL~~L~L~~N~Ig~~G--------a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~ 160 (197)
T 1pgv_A 89 GLIELIETSPSLRVLNVESNFLTPEL--------LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLL 160 (197)
T ss_dssp THHHHHHHCSSCCEEECCSSBCCHHH--------HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHhcCCccCeEecCCCcCCHHH--------HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcC
Confidence 34455666677888888888775432 255566677667788888875433 11 0112233445677
Q ss_pred EEeecCC
Q 038150 414 SLDLSSC 420 (488)
Q Consensus 414 ~L~l~~~ 420 (488)
.|+++.+
T Consensus 161 ~L~l~~~ 167 (197)
T 1pgv_A 161 RVGISFA 167 (197)
T ss_dssp EEECCCC
T ss_pred eEeccCC
Confidence 7776544
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.59 E-value=0.67 Score=43.97 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=43.1
Q ss_pred hCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCcccc
Q 038150 381 ALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDEFL 454 (488)
Q Consensus 381 ~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~ 454 (488)
.+..+.+|+.+.+.++.+...-...+..+.+|+.+.|..+ ++.+.. +.++++|+.+.+.. .++.++...+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF 352 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK--SITLIESGAF 352 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT--TCCEECTTTT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC--ccCEEchhHh
Confidence 3556677888877766555422345566777888877543 444443 66777788777743 3666665433
No 162
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.49 E-value=0.013 Score=59.31 Aligned_cols=38 Identities=3% Similarity=-0.243 Sum_probs=31.7
Q ss_pred cccccccccccceeec-----------ccccCCCcccccchhhhHHHHHHH--HHH
Q 038150 76 ALIAPHKKKKVRFCFR-----------ASCLGFKTEEFGFKQVFLRHDIAN--KIK 118 (488)
Q Consensus 76 ~~~~~~~~~~lk~cf~-----------~~cs~fped~~i~~~~l~~~~ia~--~i~ 118 (488)
...+++++..+|.||. | ||+||+||.|. ++.|+|+ |+.
T Consensus 368 ~~Sy~~L~~~lk~~f~~Ls~~er~l~~~-ls~fp~~~~i~----i~~w~a~~~G~i 418 (549)
T 2a5y_B 368 PYSYKSLAMALQRCVEVLSDEDRSALAF-AVVMPPGVDIP----VKLWSCVIPVDI 418 (549)
T ss_dssp SSSSSSHHHHHHHHHHTSCHHHHHHTTG-GGSSCTTCCEE----HHHHHHHSCC--
T ss_pred hcccccccHHHHHHHhccchhhhhHhhh-eeeeCCCCeee----eeeeeeecccee
Confidence 3445578999999999 9 99999999999 8999999 774
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.12 E-value=0.11 Score=44.24 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=18.9
Q ss_pred HhhhCCCCCCCCEEEeccccCCCC----CchHHHhccCCcEEeecCCC
Q 038150 378 LLEALRPPLNLKELEIEYYRGNTV----FPSWMTSLTNLKSLDLSSCE 421 (488)
Q Consensus 378 ~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~ 421 (488)
+.+.+..-..|+.|+|++|.+... +-..+..-+.|++|+|+.|.
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 334444444555555555544320 11122233445555555554
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.63 E-value=0.96 Score=42.88 Aligned_cols=60 Identities=8% Similarity=-0.039 Sum_probs=28.3
Q ss_pred hcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCC-chHHHhccCCcEEeec
Q 038150 345 ELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF-PSWMTSLTNLKSLDLS 418 (488)
Q Consensus 345 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~ 418 (488)
.+.++.+|+.+.+..+.+... -...+..+.+|+.+.|..+ ... + ...+..+.+|+.+.+.
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I------------~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETL------------EPRVFMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEE------------CTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccccee------------hhhhhcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEEC
Confidence 345556666666654433211 0134555666666666432 221 2 2234455555555553
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.16 E-value=0.71 Score=36.29 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=19.6
Q ss_pred cCcEeecCCCCCcccCchh-hccccccceeeccCCC
Q 038150 244 NLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTN 278 (488)
Q Consensus 244 ~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~ 278 (488)
+|++|+|++|. +..+|.+ +..+++|++|++.+|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 35666666644 5555443 3556666666666654
No 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=86.84 E-value=0.12 Score=55.47 Aligned_cols=35 Identities=9% Similarity=-0.198 Sum_probs=31.8
Q ss_pred cccccc-ceeecccccCCCcccccchhhhHHHHHHHH
Q 038150 81 HKKKKV-RFCFRASCLGFKTEEFGFKQVFLRHDIANK 116 (488)
Q Consensus 81 ~~~~~l-k~cf~~~cs~fped~~i~~~~l~~~~ia~~ 116 (488)
.++... |.||+| ||+||+|+.|.++.+++.|++++
T Consensus 365 ~Lp~eelK~cFL~-LAIFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 365 VLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp HSCTTHHHHHHHH-TTSSCTTSCEEHHHHHHHHCSSC
T ss_pred hCCHHHHHHHHHH-HhCCCCCCCCCHHHHHHHhcCCC
Confidence 457778 999999 99999999999999999999875
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.62 E-value=0.65 Score=36.51 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=22.0
Q ss_pred CCCCEEEeccccCCCCCc-hHHHhccCCcEEeecCCC
Q 038150 386 LNLKELEIEYYRGNTVFP-SWMTSLTNLKSLDLSSCE 421 (488)
Q Consensus 386 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 421 (488)
++|+.|+|++|.+.. +| ..+..+++|+.|+|.+|+
T Consensus 31 ~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCc-cChhhhhhccccCEEEecCCC
Confidence 466777777776666 43 334566677777776665
No 168
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=83.50 E-value=1 Score=50.09 Aligned_cols=35 Identities=3% Similarity=-0.143 Sum_probs=31.9
Q ss_pred ccccccceeecccccCCCcccccchhhhHHHHHHHH
Q 038150 81 HKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANK 116 (488)
Q Consensus 81 ~~~~~lk~cf~~~cs~fped~~i~~~~l~~~~ia~~ 116 (488)
.++...|.||.| ||+||+++.|.+..+++.|.+++
T Consensus 374 ~L~~~~~~~~~~-l~~f~~~~~i~~~~~~~~~~~~~ 408 (1249)
T 3sfz_A 374 MLREDIKDYYTD-LSILQKDVKVPTKVLCVLWDLET 408 (1249)
T ss_dssp TSCTTTHHHHHH-GGGSCTTCCEEHHHHHHHHTCCH
T ss_pred hCCHHHHHHHHH-hCccCCCCeeCHHHHHHHhCCCH
Confidence 467889999999 99999999999999999998664
No 169
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=72.03 E-value=6.1 Score=30.78 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=32.4
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhh
Q 038150 3 LVVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYAS 49 (488)
Q Consensus 3 l~~~v~~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~ 49 (488)
.+..|..+|...+.+|..|..++......= -|.|..+|..++
T Consensus 55 ql~~v~kdi~~a~~eL~~m~~~i~~ekP~W-----KKiWE~EL~~Vc 96 (141)
T 3okq_A 55 KLETVSKDLENAQADVLKLQEFIDTEKPHW-----KKTWEAELDKVC 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchh-----HHHHHHHHHHHH
Confidence 467889999999999999999998764321 267888876653
No 170
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=60.59 E-value=38 Score=27.74 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=26.6
Q ss_pred ccCcHHHHHHHHHHHHhhhchHHHHHHHHHhhhh
Q 038150 32 QVKDKAVRHWLGRLKYASYDIEDVLDEWITGRRK 65 (488)
Q Consensus 32 ~~~~~~v~~w~~~lr~~~yd~eD~id~~~~~~~~ 65 (488)
...++.+..+...+.++.|.++|+..+...+...
T Consensus 83 ~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~ 116 (175)
T 4abx_A 83 AKYDETVMQLQNELRAALESVQAIAGELRDVAEG 116 (175)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456778889999999999999998887754433
No 171
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=58.19 E-value=41 Score=23.99 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=43.9
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhhchHHHHHHHHH
Q 038150 4 VVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWIT 61 (488)
Q Consensus 4 ~~~v~~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~yd~eD~id~~~~ 61 (488)
+..++++|+.|..++..+++.|.|.+--...-..+.....++.++--.++...++|..
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999988887643222345778888888888888888888874
No 172
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=51.63 E-value=38 Score=25.87 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=40.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHhhhcc--CcHHHHHHHHHHHHhhhchHHHH
Q 038150 5 VGVEKEVKSLTSHLQAIQAVLDDAEEKQV--KDKAVRHWLGRLKYASYDIEDVL 56 (488)
Q Consensus 5 ~~v~~~i~~l~~eL~~~~~~L~~a~~~~~--~~~~v~~w~~~lr~~~yd~eD~i 56 (488)
..+..+|+.++.+|+.++.++.-...... -+.-+..|...-|++|+++=+..
T Consensus 10 ~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~ 63 (122)
T 3viq_A 10 LKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPM 63 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999988886554432 25567899999999988875544
No 173
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=51.33 E-value=4.4 Score=40.91 Aligned_cols=34 Identities=3% Similarity=-0.147 Sum_probs=30.5
Q ss_pred ccccccceeecccccCCCcccccchhhhHHHHHHH
Q 038150 81 HKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIAN 115 (488)
Q Consensus 81 ~~~~~lk~cf~~~cs~fped~~i~~~~l~~~~ia~ 115 (488)
.++...|.||.+ ||+||+|+.|....++..|.++
T Consensus 374 ~L~~~~~~~l~~-la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 374 MLREDIKDYYTD-LSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp TSCTTTHHHHHH-GGGCCTTCCEEHHHHHHHHTCC
T ss_pred hCCHHHHHHHHH-ccccCCCCccCHHHHHHHhccC
Confidence 457788999999 9999999999999999999765
No 174
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=37.15 E-value=22 Score=17.41 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHh
Q 038150 36 KAVRHWLGRLKYA 48 (488)
Q Consensus 36 ~~v~~w~~~lr~~ 48 (488)
.+|+.|++.+|-+
T Consensus 8 DSV~rWmeDLr~M 20 (22)
T 3ro3_B 8 DSVQRWMEDLKLM 20 (26)
T ss_pred HHHHHHHHHHHhh
Confidence 5689999988854
No 175
>3kdw_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482} PDB: 3g6i_A*
Probab=36.14 E-value=26 Score=29.11 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHhhh-ccCcHHHHHHHHHHHHhhhchHHHH
Q 038150 8 EKEVKSLTSHLQ------AIQAVLDDAEEK-QVKDKAVRHWLGRLKYASYDIEDVL 56 (488)
Q Consensus 8 ~~~i~~l~~eL~------~~~~~L~~a~~~-~~~~~~v~~w~~~lr~~~yd~eD~i 56 (488)
+++|+.+++.++ +|+++++.+-.- +....++..|+.+.|+.|-|+++.-
T Consensus 124 ~eQie~Vkd~mTyg~v~~T~k~y~~mvP~Lteeek~~I~~~L~eARE~AmD~~~sk 179 (221)
T 3kdw_A 124 AKQIDAVKDGMTYGVVMVTYKATVDMIPTLKEEEKAQIMAWLVEAREFAMDAENSN 179 (221)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHTTSSSHH
T ss_pred HHHHHHHHcccceeeehhhHHHHHHHcCcccHHHHHHHHHHHHHHHHHhccccchH
Confidence 567888888775 567777765433 3445668999999999999998753
No 176
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=34.44 E-value=43 Score=23.00 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh
Q 038150 6 GVEKEVKSLTSHLQAIQAVLDDAEE 30 (488)
Q Consensus 6 ~v~~~i~~l~~eL~~~~~~L~~a~~ 30 (488)
+++.+++.|+.+...+..-++.++.
T Consensus 6 aiKkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 6 AIKKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555555543
No 177
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=34.24 E-value=31 Score=22.10 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHH----hhhchHH
Q 038150 6 GVEKEVKSLTSHLQAIQAVLDDAEEK-QVKDKAVRHWLGRLKY----ASYDIED 54 (488)
Q Consensus 6 ~v~~~i~~l~~eL~~~~~~L~~a~~~-~~~~~~v~~w~~~lr~----~~yd~eD 54 (488)
.|-.++++|+.+++++.++|--.... ...++.+....++.|+ ---|+||
T Consensus 8 ~vl~ELeRlkveiQRLE~ml~p~~~~e~v~eeEl~ei~~eARd~~~e~Widaee 61 (67)
T 1wmi_B 8 DVLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLELARDEDPENWIDAEE 61 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCBCCCTTCCHHHHHHHHHHHTCCCGGGEEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccchhccccHhh
Confidence 46678888888888888877533332 3556667777777776 3445554
No 178
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=33.73 E-value=55 Score=17.86 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 038150 110 RHDIANKIKEMNEELHDIATQK 131 (488)
Q Consensus 110 ~~~ia~~i~~i~~~l~~i~~~~ 131 (488)
..|||+.+..|.+.+....-++
T Consensus 5 EiwIAQELRRIGDeFNa~ypRR 26 (33)
T 1pq1_B 5 EIRIAQELRRIGDEFNETYTRR 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHhhcccchH
Confidence 4699999999888877655443
No 179
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=32.67 E-value=59 Score=20.48 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=20.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHH
Q 038150 4 VVGVEKEVKSLTSHLQAIQAVLDD 27 (488)
Q Consensus 4 ~~~v~~~i~~l~~eL~~~~~~L~~ 27 (488)
.-.+++++++|+.|...|+..|+.
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999988875
No 180
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=29.02 E-value=2e+02 Score=22.21 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=39.0
Q ss_pred cchhcHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHH-HHhhhchHHHHHHHH
Q 038150 2 KLVVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRL-KYASYDIEDVLDEWI 60 (488)
Q Consensus 2 ~l~~~v~~~i~~l~~eL~~~~~~L~~a~~~~~~~~~v~~w~~~l-r~~~yd~eD~id~~~ 60 (488)
+.++.+++.++.+..+|..+..-|...+.--..++-+..-...+ +.+.+-+|.+....+
T Consensus 21 KkL~dveksv~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE 80 (135)
T 1i6z_A 21 KKLKDLEVSAEKIANHLQELNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILE 80 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888888877665555454544444 444455555544444
No 181
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=27.32 E-value=99 Score=20.11 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=27.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHhhh
Q 038150 5 VGVEKEVKSLTSHLQAIQAVLDDAEEK-QVKDKAVRHWLGRLKYASY 50 (488)
Q Consensus 5 ~~v~~~i~~l~~eL~~~~~~L~~a~~~-~~~~~~v~~w~~~lr~~~y 50 (488)
-.+++++.+|+.+...|...+..-... ....+.++....+..|-+|
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~~~~ 56 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAW 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 356889999999999988888753321 2223444444444444443
No 182
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=24.78 E-value=80 Score=16.25 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038150 110 RHDIANKIKEMNEELHDI 127 (488)
Q Consensus 110 ~~~ia~~i~~i~~~l~~i 127 (488)
..|||+.+..|.+.+...
T Consensus 7 E~wiAqELRRIGDeFN~~ 24 (27)
T 3kj0_B 7 EIWYAQELRRIGDEFNAY 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 479999998887766543
No 183
>2qfa_C Inner centromere protein; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=23.94 E-value=85 Score=19.07 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHhhh
Q 038150 20 AIQAVLDDAEEKQVKDKAVRHWLGRLKYASY 50 (488)
Q Consensus 20 ~~~~~L~~a~~~~~~~~~v~~w~~~lr~~~y 50 (488)
..+.|+.+++.+.. .|++++.+-|+
T Consensus 18 Kl~eF~~~vdnk~m------vWL~EIeeEA~ 42 (47)
T 2qfa_C 18 KLMEFLCNMDNKDL------VWLEEIQEEAE 42 (47)
T ss_dssp HHHHHHHHHHHTHH------HHHHHHHHHHH
T ss_pred HHHHHHHhccchhh------HHHHHHHHHHH
Confidence 44556666655533 57777766554
No 184
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=22.00 E-value=89 Score=15.74 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 038150 6 GVEKEVKSLTSHLQAIQAVLDD 27 (488)
Q Consensus 6 ~v~~~i~~l~~eL~~~~~~L~~ 27 (488)
.+++++-+|+.|.+.++.-.+|
T Consensus 4 qlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhc
Confidence 3566777777776665554443
No 185
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=20.35 E-value=24 Score=20.55 Aligned_cols=9 Identities=11% Similarity=-0.311 Sum_probs=6.3
Q ss_pred cCCCccccc
Q 038150 95 LGFKTEEFG 103 (488)
Q Consensus 95 s~fped~~i 103 (488)
++||++|+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 477777776
Done!