BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038151
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 129/504 (25%), Positives = 209/504 (41%), Gaps = 91/504 (18%)
Query: 1 MASQASSQLHFVLFPFLIQGHIIPMIDIARLLAKQGAFVTIVTTPKNAARFQNVIERGIQ 60
M + A+ + H V+ P+ +QGHI P+ +A+LL +G +T V T N R + RG +
Sbjct: 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRL--LKSRGPK 58
Query: 61 SGLPIQVIEFRFPCQEVGLPEGCENWDMLPSITL-VPKFFSAVEMLQL-PLENLFREIQ- 117
+ F +P+G + ++ VP +V L P L +
Sbjct: 59 AFDGFTDFNFE------SIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNH 112
Query: 118 ----PKPSCLISDI----------KFNVPRIVFHGFSGFCL-SCLHSLSV---------- 152
P +CL+SD +F +P +++ S L + +H S
Sbjct: 113 STNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKD 172
Query: 153 ----------SKVHEMPGLP-----DQVEITKDQLPEILKKKSFGAPVLAAEMASYGVIV 197
+KV +PGL D V+ + P + + F V +++
Sbjct: 173 ESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFF-IEVADRVNKDTTILL 231
Query: 198 NSFEELEPAYVEEYKKARGGKVWCVGPVSFFNKE-----DIDKVERGNKASIDCSGCLKW 252
N+F ELE + ++ +GP+ K+ +D ++ N D + CL W
Sbjct: 232 NTFNELESDVINALSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLD-SNLWKED-TECLDW 288
Query: 253 LDSWEPSSVVY-------------------ALEATKKPFIWVVRAGDKTXXXXXXXXXXX 293
L+S EP SVVY L KK F+W++R
Sbjct: 289 LESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRP--DLVIGGSVIFSSE 346
Query: 294 XXXRIEGRGLLIRGWAPQVVILSHPTVGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFC 353
I RGL I W PQ +L+HP++GGFLTHCGWNS E++ G+PM+ WPFFADQ
Sbjct: 347 FTNEIADRGL-IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPT 405
Query: 354 NEKLVVQVLRIGVSIGAERPLHLADEVKKEAVEKAVNMLMXXXXXXXXXXXXAKEYGEMA 413
+ + + IG+ I VK+E + K +N ++ A E + A
Sbjct: 406 DCRFICNEWEIGMEIDT--------NVKREELAKLINEVI-AGDKGKKMKQKAMELKKKA 456
Query: 414 KRAIEEGGSSSLNIKLLIQDIMQR 437
+ GG S +N+ +I+D++ +
Sbjct: 457 EENTRPGGCSYMNLNKVIKDVLLK 480
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 128/487 (26%), Positives = 203/487 (41%), Gaps = 85/487 (17%)
Query: 4 QASSQLHFVLFPFLIQGHIIPMIDIA-RLLAKQGAFVTIVTTPKNAARFQNVIERGIQSG 62
+ S H + P GH+IP+++ A RL+ G VT V + + +R +
Sbjct: 2 EESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPP---SKAQRTVLDS 58
Query: 63 LPIQVIEFRFPCQEVGLPEGCENWDMLPSITLVPKFFSAVEMLQLPLENLFR---EIQPK 119
LP + P ++ D+ S + + V L +F E
Sbjct: 59 LPSSISSVFLPPVDLT--------DLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRL 110
Query: 120 PSCLISD----------IKFNVPRIVFHGFSGFCLSC-LH--------SLSVSKVHEMPG 160
P+ L+ D ++F+VP +F+ + LS LH S ++ E
Sbjct: 111 PTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLM 170
Query: 161 LPDQVEIT-KDQLPEILKKKSFGAPVLAAEMASY----GVIVNSFEELEPAYVEEYKKAR 215
LP V + KD L +K L Y G++VN+F ELEP ++ ++
Sbjct: 171 LPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPG 230
Query: 216 GGK--VWCVGPVSFFNKEDIDKVERGNKASIDCSGCLKWLDSWEPSSVVY---------- 263
K V+ VGP+ K++ + E S CLKWLD+ SV+Y
Sbjct: 231 LDKPPVYPVGPLVNIGKQEAKQTEE--------SECLKWLDNQPLGSVLYVSFGSGGTLT 282
Query: 264 ---------ALEATKKPFIWVVRAGDKTXXXXXXXXXXXXX----------XRIEGRGLL 304
L +++ F+WV+R+ R + RG +
Sbjct: 283 CEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFV 342
Query: 305 IRGWAPQVVILSHPTVGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRI 364
I WAPQ +L+HP+ GGFLTHCGWNS LE+V +G+P++ WP +A+Q N L+ + +R
Sbjct: 343 IPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIR- 401
Query: 365 GVSIGAERPLHLADE-VKKEAVEKAVNMLMXXXXXXXXXXXXAKEYGEMAKRAIEEGGSS 423
A RP D V++E V + V LM KE E A R +++ G+S
Sbjct: 402 ----AALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKM-KELKEAACRVLKDDGTS 456
Query: 424 SLNIKLL 430
+ + L+
Sbjct: 457 TKALSLV 463
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 135/307 (43%), Gaps = 53/307 (17%)
Query: 151 SVSKVHEMPGLPDQVEITKDQLPE-ILKKKSFGAPVLAAEMA-----SYGVIVNSFEELE 204
V + +PG P E+ LPE ++K + +M + V +NSF +
Sbjct: 172 DVKSIDVLPGFP---ELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIH 228
Query: 205 PAYVEEYKKARGGKVWCVGPVSFFNKEDIDKVERGNKASIDCSGCLKWLDSWEPSSVVY- 263
P +E ++ + VGP + + + D GCL+WLD E SSVVY
Sbjct: 229 P-LIENELNSKFKLLLNVGPFNLTTPQ---------RKVSDEHGCLEWLDQHENSSVVYI 278
Query: 264 ------------------ALEATKKPFIWVVRAGDKTXXXXXXXXXXXXXXRIEGRGLLI 305
+LE PFIW R K R + +G ++
Sbjct: 279 SFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPK------EKLPKGFLERTKTKGKIV 332
Query: 306 RGWAPQVVILSHPTVGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIG 365
WAPQV IL H +VG FLTH GWNSVLE + G+PM++ PFF DQ N L VL IG
Sbjct: 333 -AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG 391
Query: 366 VSIGAERPLHLADEVKKEAVEKAVNMLMXXXXXXXXXXXXAKEYGEMAKRAIEEGGSSSL 425
V + + KE+++KA+ + M K E A +A+E+ G+S++
Sbjct: 392 VGVD-------NGVLTKESIKKALELTMSSEKGGIMRQKIVK-LKESAFKAVEQNGTSAM 443
Query: 426 NIKLLIQ 432
+ LIQ
Sbjct: 444 DFTTLIQ 450
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 161/347 (46%), Gaps = 58/347 (16%)
Query: 128 KFNVPRIVFHGFSGFCLSCLHSLSVSKVHE-------------MPGLPDQVEITKDQLPE 174
+F +P +F + LS + SL ++ E +PG+ +QV + LP+
Sbjct: 133 EFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQV--PSNVLPD 190
Query: 175 ILKKKSFGAPVLAAEMA-----SYGVIVNSFEELEPAYVEEY--KKARGGKVWCVGPVSF 227
K G + ++A + G+IVN+F +LE + ++ + ++ VGP+
Sbjct: 191 ACFNKD-GGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLD 249
Query: 228 FNKEDIDKVERGNKASIDCSGCLKWLDSWEPSSVVY--------------------ALEA 267
+ K+++ I LKWLD SVV+ L+
Sbjct: 250 LKGQPNPKLDQAQHDLI-----LKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKH 304
Query: 268 TKKPFIWVVRAGDKTXXXXXXXXXXXXXXRIEGRGLLIRGWAPQVVILSHPTVGGFLTHC 327
+ F+W A K +EG+G+ I GWAPQV +L+H +GGF++HC
Sbjct: 305 SGVRFLWSNSAEKKVFPEGFLEWM-----ELEGKGM-ICGWAPQVEVLAHKAIGGFVSHC 358
Query: 328 GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVSIGAERPLHLADEVKKEAVEK 387
GWNS+LE++ G+P++TWP +A+Q N +V+ +G+ + + +D V E +EK
Sbjct: 359 GWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDY-RKGSDVVAAEEIEK 417
Query: 388 AVNMLMXXXXXXXXXXXXAKEYGEMAKRAIEEGGSSSLNIKLLIQDI 434
+ LM +E EM++ A+ +GGSS +++ LI DI
Sbjct: 418 GLKDLM---DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 161/347 (46%), Gaps = 58/347 (16%)
Query: 128 KFNVPRIVFHGFSGFCLSCLHSLSVSKVHE-------------MPGLPDQVEITKDQLPE 174
+F +P +F + LS + SL ++ E +PG+ +QV + LP+
Sbjct: 133 EFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQV--PSNVLPD 190
Query: 175 ILKKKSFGAPVLAAEMA-----SYGVIVNSFEELEPAYVEEY--KKARGGKVWCVGPVSF 227
K G + ++A + G+IVN+F +LE + ++ + ++ VGP+
Sbjct: 191 ACFNKD-GGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLD 249
Query: 228 FNKEDIDKVERGNKASIDCSGCLKWLDSWEPSSVVY--------------------ALEA 267
+ K+++ I LKWLD SVV+ L+
Sbjct: 250 LKGQPNPKLDQAQHDLI-----LKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKH 304
Query: 268 TKKPFIWVVRAGDKTXXXXXXXXXXXXXXRIEGRGLLIRGWAPQVVILSHPTVGGFLTHC 327
+ F+W A K +EG+G+ I GWAPQV +L+H +GGF++HC
Sbjct: 305 SGVRFLWSNSAEKKVFPEGFLEWM-----ELEGKGM-ICGWAPQVEVLAHKAIGGFVSHC 358
Query: 328 GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVSIGAERPLHLADEVKKEAVEK 387
GWNS+LE++ G+P++TWP +A+Q N +V+ +G+ + + +D V E +EK
Sbjct: 359 GWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDY-RKGSDVVAAEEIEK 417
Query: 388 AVNMLMXXXXXXXXXXXXAKEYGEMAKRAIEEGGSSSLNIKLLIQDI 434
+ LM +E EM++ A+ +GGSS +++ LI DI
Sbjct: 418 GLKDLM---DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 36/194 (18%)
Query: 194 GVIVNSFEELEPAYVEEYKKARGGKVWCVGPVSFFNKEDIDKVERGNKASIDCSGCLKWL 253
V +NSFEEL+ + + K ++ +GP + + + +GCL+WL
Sbjct: 216 AVFINSFEELDDSLTNDLK-SKLKTYLNIGPFNLITPPPVVP---------NTTGCLQWL 265
Query: 254 DSWEPSSVVY-------------------ALEATKKPFIWVVRAGDKTXXXXXXXXXXXX 294
+P+SVVY ALEA++ PFIW +R DK
Sbjct: 266 KERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR--DKARVHLPEGFLE-- 321
Query: 295 XXRIEGRGLLIRGWAPQVVILSHPTVGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCN 354
+ G G+++ WAPQ +L+H VG F+THCGWNS+ E+V+ G+P++ PFF DQ N
Sbjct: 322 --KTRGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN 378
Query: 355 EKLVVQVLRIGVSI 368
++V VL IGV I
Sbjct: 379 GRMVEDVLEIGVRI 392
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 308 WAPQVVILSHPTVGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCN 354
W PQ +L HP F+TH G N + EA+ +G+P V P FADQ N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 305 IRGWAPQVVILSHPTVGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRI 364
+ W PQ+ IL+ + F+TH G S +EA+SN +PMV P A+Q N + +V+
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE---- 362
Query: 365 GVSIGAERPLHLADEVKKEAVEKAV 389
+ +G P D+V E + +AV
Sbjct: 363 -LGLGRHIPR---DQVTAEKLREAV 383
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 305 IRGWAPQVVILSHPTVGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLV 358
+ W PQ+ IL + F+TH G E ++ PM+ P DQF N ++
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 308 WAPQVVILSHPTVGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVS 367
W P +L+H LTH +VLEA + G+P+V P FA + V L +G
Sbjct: 288 WIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 368 IGAERPLHLADEVKKEAVEK 387
+ RP L +EAVE+
Sbjct: 346 L---RPDQLEPASIREAVER 362
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 8 QLHFVLFPFLIQGHIIPMIDIARLLAKQGAFVTIVTTP 45
Q H + GH+ P + + LA++G +T VTTP
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTP 41
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 308 WAPQVVILSHPTVGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF 352
W PQ +L H V + H G + L A+ G+P +++P+ D F
Sbjct: 299 WVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 110 ENLFREIQPKPSCLISDIKFNVPRIVFHGFSGFCLSCLHSLSVSKVHEMPGLPDQVEITK 169
E + RE+ + LI+ ++ N V GF G L L+S+++ + G+PD+ +
Sbjct: 543 EEMLREVGGRARALIT-VEDNT---VVGGFGGAVLEALNSMNLHPTVRVLGIPDEFQ-EH 597
Query: 170 DQLPEILKKKSFGAPVLAAEMASYGVIV 197
+ + AP + +A GV V
Sbjct: 598 ATAESVHARAGIDAPAIRTVLAELGVDV 625
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 59 IQSGLPIQVIEFRFPCQEVGLPEGCENWDMLPSITLV 95
+Q P +++ FPC + G E C+N ++L S+ V
Sbjct: 73 LQCRFPRRLVVLGFPCNQFGHQENCQNEEILNSLKYV 109
>pdb|4EOG|A Chain A, Crystal Structure Of Csx1 Of Pyrococcus Furiosus
Length = 480
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 329 WNSVLEAVSNGLPMVTWPFF-----ADQFCNEKLVVQVLRIGVSIG 369
WN+ + +V+NG P+V F+ + + N+KL + +G+ +G
Sbjct: 242 WNAFISSVANGFPLVFASFYPNIRDVEDYLNKKL--EEFLVGIEVG 285
>pdb|1IGY|B Chain B, Structure Of Immunoglobulin
pdb|1IGY|D Chain D, Structure Of Immunoglobulin
Length = 434
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 82 GCENWDMLPSITLVPKFFSAVEMLQLPLENLFREIQPKPSCLISDIKFNVPRIVFHGF 139
GC+ P I VP+ S P + L + PK +C++ DI + P + F F
Sbjct: 217 GCK-----PCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWF 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,104,262
Number of Sequences: 62578
Number of extensions: 492476
Number of successful extensions: 1079
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 21
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)