BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038157
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 10/149 (6%)
Query: 60 KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDYPFT 119
++V EK GG W YT R G+D N +H+S+Y L +N P+E + F DY F
Sbjct: 33 ELVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF- 86
Query: 120 ARDDGSGDP-RRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNK-WKVKSKL 177
D+ G P +P + Y++ V + G+ + +RF + V +V E+++ + V +
Sbjct: 87 --DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 144
Query: 178 RNGDGDCDEIYDAVVVCNGHYTEPRIAEI 206
D E +D VV C GH++ P + E
Sbjct: 145 HTTDTIYSEEFDYVVCCTGHFSTPYVPEF 173
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 10/149 (6%)
Query: 60 KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDYPFT 119
++V EK GG W YT R G+D N +H+S+Y L +N P+E + F DY F
Sbjct: 33 ELVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF- 86
Query: 120 ARDDGSGDP-RRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNK-WKVKSKL 177
D+ G P +P + Y++ V + G+ + +RF + V +V E+++ + V +
Sbjct: 87 --DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 144
Query: 178 RNGDGDCDEIYDAVVVCNGHYTEPRIAEI 206
D E +D VV C GH++ P + E
Sbjct: 145 HTTDTIYSEEFDYVVCCTGHFSTPYVPEF 173
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 60 KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDYPFT 119
++V EK GG W YT R G+D N +H+S+Y L +N P+E + F DY F
Sbjct: 38 ELVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF- 91
Query: 120 ARDDGSGDP-RRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNK-WKVKSKL 177
D+ G P +P + Y++ V + G+ + +RF + V +V E+++ + V +
Sbjct: 92 --DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 149
Query: 178 RNGDGDCDEIYDAVVVCNGHYTEPRIAEI 206
D +D VV C GH++ P + E
Sbjct: 150 HTTDTIYSAAFDYVVCCTGHFSTPYVPEF 178
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 60 KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDYPFT 119
++V EK GG W YT R G+D N +H+S Y L +N P+E + F DY F
Sbjct: 33 ELVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSXYRYLWSNGPKECLEFADYTF- 86
Query: 120 ARDDGSGDP-RRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNK-WKVKSKL 177
D+ G P +P + Y++ V + G+ + +RF + V +V E+++ + V +
Sbjct: 87 --DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 144
Query: 178 RNGDGDCDEIYDAVVVCNGHYTEPRIAEI 206
D E +D VV C GH++ P + E
Sbjct: 145 HTTDTIYSEEFDYVVCCTGHFSTPYVPEF 173
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 60 KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDYPFT 119
++V EK GG W YT R G+D N +H+S+Y L ++ P+E + F DY F
Sbjct: 38 ELVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSDGPKECLEFADYTF- 91
Query: 120 ARDDGSGDP-RRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNK-WKVKSKL 177
D+ G P +P + Y++ V + G+ + +RF + V +V E+++ + V +
Sbjct: 92 --DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 149
Query: 178 RNGDGDCDEIYDAVVVCNGHYTEPRIAEI 206
D +D VV C GH++ P + E
Sbjct: 150 HTTDTIYSAAFDYVVCCTGHFSTPYVPEF 178
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 60 KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDYPFT 119
++V EK GG W YT R G+D N +H+S+Y L ++ P+E + F DY F
Sbjct: 38 ELVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSSGPKECLEFADYTF- 91
Query: 120 ARDDGSGDP-RRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNK-WKVKSKL 177
D+ G P +P + Y++ V + G+ + +RF + V +V E+++ + V +
Sbjct: 92 --DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 149
Query: 178 RNGDGDCDEIYDAVVVCNGHYTEPRIAEI 206
D +D VV C GH++ P + E
Sbjct: 150 HTTDTIYSAAFDYVVCCTGHFSTPYVPEF 178
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 60 KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDYPFT 119
++V EK GG W YT R G+D N +H+S+Y L + P+E + F DY F
Sbjct: 38 ELVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSKGPKECLEFADYTF- 91
Query: 120 ARDDGSGDP-RRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNK-WKVKSKL 177
D+ G P +P + Y++ V + G+ + +RF + V +V E+++ + V +
Sbjct: 92 --DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 149
Query: 178 RNGDGDCDEIYDAVVVCNGHYTEPRIAEI 206
D +D VV C GH++ P + E
Sbjct: 150 HTTDTIYSAAFDYVVCCTGHFSTPYVPEF 178
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 25/162 (15%)
Query: 60 KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTS--------------LYSSLRTN 105
+V + E+ GG W YT + S++L V ++ T LY L+TN
Sbjct: 35 QVTLFERRGSPGGVWNYTSTL-SNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTN 93
Query: 106 LPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGL 165
P E+ G+ D F + +FP + Y + + ++ ++V+++
Sbjct: 94 TPIELXGYCDQSFKPQT------LQFPHRHTIQEYQRIYAQP--LLPFIKLATDVLDIE- 144
Query: 166 MENNKWKVKSK-LRNGDGDCDEIYDAVVVCNGHYTEPRIAEI 206
++ W V K + G +I+DAV +CNGHY P I I
Sbjct: 145 KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNI 186
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 25/162 (15%)
Query: 60 KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTS--------------LYSSLRTN 105
+V + E+ GG W YT + S++L V ++ T LY L+TN
Sbjct: 33 QVTLFERRGSPGGVWNYTSTL-SNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTN 91
Query: 106 LPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGL 165
P E+ G+ D F + +FP + Y + + ++ ++V+++
Sbjct: 92 TPIELXGYCDQSFKPQT------LQFPHRHTIQEYQRIYAQP--LLPFIKLATDVLDIE- 142
Query: 166 MENNKWKVKSK-LRNGDGDCDEIYDAVVVCNGHYTEPRIAEI 206
++ W V K + G +I+DAV +CNGHY P I I
Sbjct: 143 KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNI 184
>pdb|3NTL|A Chain A, Crystal Structure Of Glucose-1-Phosphatase (Agpe) From
Enterobacter Cloacae
pdb|3NTL|B Chain B, Crystal Structure Of Glucose-1-Phosphatase (Agpe) From
Enterobacter Cloacae
Length = 398
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 120 ARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVG-LMENNKWKVKSKLR 178
A+D S D + PG + L+ V F + F ++ V G + + +W+V SKL+
Sbjct: 183 AKDTFSADYEKEPGVSGPLKVGNSLVDAFTLQYYEGFPADQVAWGEIKTDQQWRVLSKLK 242
Query: 179 NGDGD 183
NG D
Sbjct: 243 NGYQD 247
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 136 EVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN-NKWKVKSKLRNGDGDCDEIYDAVVVC 194
E+L YLE+ V F + +F +EV + +++ N W+V + D E+Y A V
Sbjct: 121 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT-------DHGEVYRAKYVV 173
Query: 195 NG 196
N
Sbjct: 174 NA 175
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 136 EVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN-NKWKVKSKLRNGDGDCDEIYDAVVVC 194
E+L YLE+ V F + +F +EV + +++ N W+V + D E+Y A V
Sbjct: 88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT-------DHGEVYRAKYVV 140
Query: 195 NG 196
N
Sbjct: 141 NA 142
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 52 RELRREGHKVVVLEKSNRIGG-TWVYTPRVESDQLG---VDPNRAVI 94
REL++ G V VLE +R+GG TW T ++G V P++ V+
Sbjct: 24 RELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWVSPDQTVL 70
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 62 VVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112
++LEK N + T + +++L + P+R+V ++ L SL T+ PR G
Sbjct: 229 MLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNG 279
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 62 VVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112
++LEK N + T + +++L + P+R+V ++ L SL T+ PR G
Sbjct: 245 MLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNG 295
>pdb|3NRN|A Chain A, Crystal Structure Of Pf1083 Protein From Pyrococcus
Furiosus, Northeast Structural Genomics Consortium
Target Pfr223
Length = 421
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 56 REGHKVVVLEKSNRIGGTWVYTP 78
R GH+++VLEKS IGG + P
Sbjct: 21 RNGHEIIVLEKSAXIGGRFTNLP 43
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 52 RELRREGHKVVVLEKSNRIGGTW 74
+LR +GH+VVVL +NR+ T+
Sbjct: 101 HKLREQGHRVVVLSNTNRLHTTF 123
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 53 ELRREGHKVVVLEKSNRIGGTWVYTPRVESDQL 85
EL++ KV+V+EK N IGG YT E Q+
Sbjct: 19 ELKKLNKKVLVIEKRNHIGGN-AYTEDCEGIQI 50
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 130 RFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENN-KWKVKS 175
++ E+L YLE F + +RF++ V + L E +W V++
Sbjct: 94 KYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRT 140
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 130 RFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENN-KWKVKS 175
++ E+L YLE F + +RF++ V + L E +W V++
Sbjct: 94 KYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRT 140
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 130 RFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENN-KWKVKS 175
++ E+L YLE F + +RF++ V + L E +W V++
Sbjct: 94 KYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRT 140
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 53 ELRREGHKVVVLEKSNRIGGTWVYTPRVESDQ 84
EL++ G+KV VLE R GG V+T R S++
Sbjct: 29 ELQKAGYKVTVLEARTRPGGR-VWTARGGSEE 59
>pdb|4ESJ|A Chain A, Restriction Endonuclease Dpni In Complex With Target Dna
pdb|4ESJ|B Chain B, Restriction Endonuclease Dpni In Complex With Target Dna
Length = 257
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 146 SEFGIDEMVRFESEVVNVGLMENN-KWKVKSKLR 178
SEF +++M RFES++ N+ + N+ K K++ +L+
Sbjct: 205 SEFTLEDMYRFESDLKNIFVKNNHIKEKIRQQLQ 238
>pdb|3QZU|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
pdb|3QZU|B Chain B, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
Length = 181
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 10/42 (23%)
Query: 61 VVVLEKSNRIGGTWVYTPRVESDQL-GVDPNRAVIHTSLYSS 101
VV L +NR+ D L G DPN+ +++TS+YSS
Sbjct: 99 VVTLGGANRL---------TTGDALPGTDPNQKILYTSIYSS 131
>pdb|3D2C|A Chain A, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|B Chain B, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|C Chain C, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|D Chain D, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|E Chain E, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|F Chain F, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|G Chain G, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|H Chain H, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|I Chain I, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|J Chain J, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|K Chain K, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|L Chain L, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 79 RVESDQL--GVDPNRAVIHTSLYSS 101
R+ +D+ G DPN+ +++TS+YSS
Sbjct: 107 RLTTDKAPPGTDPNQKILYTSIYSS 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,310,763
Number of Sequences: 62578
Number of extensions: 246277
Number of successful extensions: 517
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 33
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)