Query 038157
Match_columns 207
No_of_seqs 125 out of 1047
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 08:10:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02172 flavin-containing mon 99.9 8.9E-25 1.9E-29 174.6 19.8 172 34-207 9-181 (461)
2 KOG1399 Flavin-containing mono 99.9 2.1E-22 4.5E-27 158.8 16.0 157 34-207 5-161 (448)
3 PF00743 FMO-like: Flavin-bind 99.9 5.9E-21 1.3E-25 154.7 14.1 151 36-205 2-156 (531)
4 PF13738 Pyr_redox_3: Pyridine 99.8 2.3E-20 5E-25 134.9 9.9 145 39-207 1-146 (203)
5 COG2072 TrkA Predicted flavopr 99.8 2.2E-19 4.8E-24 143.2 15.7 146 32-207 5-152 (443)
6 COG2081 Predicted flavoprotein 99.8 9.7E-20 2.1E-24 138.5 12.9 158 34-203 2-171 (408)
7 PF03486 HI0933_like: HI0933-l 99.8 5.2E-19 1.1E-23 139.0 9.1 159 36-203 1-170 (409)
8 PF01494 FAD_binding_3: FAD bi 99.7 1.6E-17 3.4E-22 129.5 7.1 152 35-200 1-173 (356)
9 PRK04176 ribulose-1,5-biphosph 99.7 2.8E-16 6.1E-21 116.9 12.9 145 33-200 23-174 (257)
10 PRK07364 2-octaprenyl-6-methox 99.7 1.3E-16 2.8E-21 127.3 11.3 153 33-201 16-183 (415)
11 PRK06183 mhpA 3-(3-hydroxyphen 99.7 3E-16 6.5E-21 128.8 13.7 163 33-201 8-176 (538)
12 PRK08013 oxidoreductase; Provi 99.7 1.8E-16 4E-21 125.7 11.8 157 35-201 3-170 (400)
13 PRK06847 hypothetical protein; 99.7 2.4E-16 5.3E-21 124.1 12.3 157 35-201 4-165 (375)
14 PRK10157 putative oxidoreducta 99.7 3.5E-16 7.6E-21 124.9 13.1 157 34-200 4-165 (428)
15 COG0644 FixC Dehydrogenases (f 99.7 4.3E-16 9.4E-21 123.4 13.3 151 34-200 2-153 (396)
16 PRK10015 oxidoreductase; Provi 99.7 4.3E-16 9.3E-21 124.4 13.3 153 34-201 4-166 (429)
17 PRK06185 hypothetical protein; 99.7 3.1E-16 6.8E-21 124.7 12.1 161 33-200 4-170 (407)
18 PRK08773 2-octaprenyl-3-methyl 99.7 3.4E-16 7.4E-21 123.9 11.0 157 33-200 4-170 (392)
19 PRK06184 hypothetical protein; 99.7 8.8E-16 1.9E-20 125.2 13.1 158 35-200 3-169 (502)
20 TIGR02032 GG-red-SF geranylger 99.7 1.5E-15 3.2E-20 115.6 13.4 146 36-200 1-149 (295)
21 COG0654 UbiH 2-polyprenyl-6-me 99.7 5.7E-16 1.2E-20 122.4 11.3 155 35-201 2-164 (387)
22 PRK05714 2-octaprenyl-3-methyl 99.7 2.9E-16 6.3E-21 124.8 9.7 159 35-201 2-170 (405)
23 TIGR00292 thiazole biosynthesi 99.7 1.5E-15 3.2E-20 112.7 12.8 144 33-199 19-170 (254)
24 PRK06126 hypothetical protein; 99.7 2.1E-15 4.5E-20 124.2 14.5 162 33-200 5-189 (545)
25 PRK08244 hypothetical protein; 99.7 1.5E-15 3.3E-20 123.6 13.2 149 35-200 2-160 (493)
26 PRK07045 putative monooxygenas 99.7 1.4E-15 3E-20 120.3 12.7 157 33-200 3-166 (388)
27 PRK07494 2-octaprenyl-6-methox 99.7 5.2E-16 1.1E-20 122.7 10.1 150 32-200 4-168 (388)
28 PRK11101 glpA sn-glycerol-3-ph 99.7 1.2E-15 2.6E-20 125.1 12.1 69 132-202 146-214 (546)
29 TIGR01292 TRX_reduct thioredox 99.7 6.8E-15 1.5E-19 112.4 15.5 118 36-207 1-118 (300)
30 PRK07190 hypothetical protein; 99.7 1.6E-15 3.5E-20 122.7 12.5 158 33-200 3-166 (487)
31 PLN00093 geranylgeranyl diphos 99.7 5.6E-15 1.2E-19 118.4 15.4 154 31-200 35-200 (450)
32 PRK09078 sdhA succinate dehydr 99.7 2.4E-15 5.2E-20 124.5 13.1 169 32-202 9-215 (598)
33 PRK08020 ubiF 2-octaprenyl-3-m 99.7 9.4E-16 2E-20 121.4 10.3 156 33-200 3-170 (391)
34 PRK12266 glpD glycerol-3-phosp 99.6 2.9E-15 6.3E-20 121.9 13.2 67 133-202 153-219 (508)
35 TIGR02023 BchP-ChlP geranylger 99.6 5.3E-15 1.1E-19 117.0 14.3 148 36-201 1-157 (388)
36 PRK07588 hypothetical protein; 99.6 1.1E-15 2.5E-20 120.9 10.3 155 37-202 2-161 (391)
37 PRK06452 sdhA succinate dehydr 99.6 7E-15 1.5E-19 121.1 14.6 166 33-200 3-199 (566)
38 PRK09126 hypothetical protein; 99.6 1E-15 2.2E-20 121.2 9.4 156 35-201 3-169 (392)
39 COG0579 Predicted dehydrogenas 99.6 2.9E-15 6.2E-20 117.3 11.5 163 34-202 2-214 (429)
40 PRK08274 tricarballylate dehyd 99.6 4.8E-15 1E-19 119.9 13.2 166 33-201 2-194 (466)
41 TIGR01988 Ubi-OHases Ubiquinon 99.6 1.6E-15 3.4E-20 119.8 10.2 153 37-200 1-164 (385)
42 PRK07608 ubiquinone biosynthes 99.6 2.1E-15 4.7E-20 119.2 10.9 152 34-200 4-168 (388)
43 COG0578 GlpA Glycerol-3-phosph 99.6 5.7E-15 1.2E-19 118.0 13.3 165 34-201 11-227 (532)
44 PRK06834 hypothetical protein; 99.6 3.4E-15 7.3E-20 121.0 12.1 147 34-200 2-157 (488)
45 PRK08132 FAD-dependent oxidore 99.6 6.8E-15 1.5E-19 121.2 13.9 159 33-200 21-186 (547)
46 PRK07333 2-octaprenyl-6-methox 99.6 2E-15 4.3E-20 120.0 10.3 157 36-201 2-169 (403)
47 PRK11259 solA N-methyltryptoph 99.6 3.5E-15 7.6E-20 117.6 11.4 65 131-204 145-209 (376)
48 PRK08163 salicylate hydroxylas 99.6 1.8E-15 3.9E-20 120.0 9.7 159 34-201 3-168 (396)
49 PRK07538 hypothetical protein; 99.6 3.5E-15 7.6E-20 118.9 11.4 151 37-201 2-167 (413)
50 PRK06481 fumarate reductase fl 99.6 8.6E-15 1.9E-19 119.2 13.8 166 33-201 59-253 (506)
51 PRK06475 salicylate hydroxylas 99.6 5.6E-15 1.2E-19 117.3 12.3 160 36-201 3-169 (400)
52 PRK08850 2-octaprenyl-6-methox 99.6 2.6E-15 5.6E-20 119.4 10.2 148 35-201 4-170 (405)
53 PLN00128 Succinate dehydrogena 99.6 8.1E-15 1.8E-19 121.7 13.1 168 34-203 49-254 (635)
54 PRK13369 glycerol-3-phosphate 99.6 3.2E-15 7E-20 121.7 10.3 67 132-202 152-218 (502)
55 PRK08849 2-octaprenyl-3-methyl 99.6 4.4E-15 9.6E-20 117.3 10.6 155 35-201 3-169 (384)
56 PF00890 FAD_binding_2: FAD bi 99.6 5.6E-15 1.2E-19 117.9 11.2 162 37-200 1-204 (417)
57 PLN02985 squalene monooxygenas 99.6 1.6E-14 3.5E-19 117.5 14.0 165 32-201 40-210 (514)
58 PTZ00139 Succinate dehydrogena 99.6 1.1E-14 2.3E-19 120.9 13.1 168 34-203 28-233 (617)
59 TIGR01984 UbiH 2-polyprenyl-6- 99.6 3.5E-15 7.5E-20 117.8 9.6 152 37-200 1-163 (382)
60 PRK07804 L-aspartate oxidase; 99.6 1.5E-14 3.2E-19 118.6 13.4 169 32-202 13-213 (541)
61 PRK06753 hypothetical protein; 99.6 5.1E-15 1.1E-19 116.5 10.3 148 37-201 2-154 (373)
62 PRK07236 hypothetical protein; 99.6 1.2E-14 2.7E-19 114.8 12.2 145 34-201 5-156 (386)
63 PRK06617 2-octaprenyl-6-methox 99.6 6.3E-15 1.4E-19 116.0 10.5 146 36-201 2-162 (374)
64 PRK15317 alkyl hydroperoxide r 99.6 4.3E-14 9.3E-19 115.6 15.5 120 33-207 209-328 (517)
65 PRK08294 phenol 2-monooxygenas 99.6 3.5E-14 7.6E-19 118.2 15.2 168 33-201 30-212 (634)
66 PRK07121 hypothetical protein; 99.6 2.4E-14 5.2E-19 116.5 13.7 63 134-200 176-240 (492)
67 TIGR02028 ChlP geranylgeranyl 99.6 3.7E-14 8.1E-19 112.4 14.3 153 36-200 1-161 (398)
68 PRK06996 hypothetical protein; 99.6 1.3E-14 2.7E-19 115.2 11.6 155 31-197 7-172 (398)
69 PRK08243 4-hydroxybenzoate 3-m 99.6 1.6E-14 3.4E-19 114.5 12.1 156 35-201 2-165 (392)
70 PRK08958 sdhA succinate dehydr 99.6 1.3E-14 2.8E-19 119.9 11.5 167 34-202 6-209 (588)
71 TIGR01377 soxA_mon sarcosine o 99.6 1.1E-14 2.5E-19 114.8 10.7 63 132-203 142-204 (380)
72 TIGR01813 flavo_cyto_c flavocy 99.6 2.1E-14 4.6E-19 115.3 12.4 160 37-200 1-193 (439)
73 PRK07057 sdhA succinate dehydr 99.6 5.3E-14 1.1E-18 116.4 14.8 168 33-202 10-214 (591)
74 TIGR01424 gluta_reduc_2 glutat 99.6 1.7E-14 3.6E-19 116.0 11.5 144 35-207 2-148 (446)
75 PF01266 DAO: FAD dependent ox 99.6 7.2E-15 1.6E-19 114.6 9.1 62 132-202 144-206 (358)
76 PRK05192 tRNA uridine 5-carbox 99.6 2.4E-14 5.1E-19 116.7 12.2 153 34-201 3-159 (618)
77 PF12831 FAD_oxidored: FAD dep 99.6 3.1E-16 6.7E-21 125.2 1.3 148 37-197 1-148 (428)
78 PRK07803 sdhA succinate dehydr 99.6 2E-14 4.3E-19 119.6 11.9 166 34-201 7-215 (626)
79 PRK11445 putative oxidoreducta 99.6 3.4E-14 7.4E-19 110.9 12.5 148 36-201 2-159 (351)
80 PLN02464 glycerol-3-phosphate 99.6 5.8E-14 1.3E-18 116.7 14.4 69 132-202 229-299 (627)
81 TIGR02360 pbenz_hydroxyl 4-hyd 99.6 2.4E-14 5.3E-19 113.2 11.6 155 35-201 2-165 (390)
82 TIGR03143 AhpF_homolog putativ 99.6 8.8E-14 1.9E-18 114.5 15.1 118 34-207 3-120 (555)
83 PRK06069 sdhA succinate dehydr 99.6 2.6E-14 5.7E-19 118.1 12.1 167 33-201 3-202 (577)
84 TIGR01812 sdhA_frdA_Gneg succi 99.6 4E-14 8.7E-19 117.0 13.2 164 37-202 1-194 (566)
85 TIGR01176 fum_red_Fp fumarate 99.6 2.5E-14 5.4E-19 117.9 11.9 166 35-202 3-198 (580)
86 PLN02815 L-aspartate oxidase 99.6 2.7E-14 5.8E-19 117.7 11.8 166 33-201 27-224 (594)
87 PRK06854 adenylylsulfate reduc 99.6 6.7E-14 1.5E-18 116.1 14.2 168 34-204 10-200 (608)
88 TIGR03329 Phn_aa_oxid putative 99.6 2.1E-14 4.5E-19 115.9 10.8 63 132-204 180-242 (460)
89 TIGR00275 flavoprotein, HI0933 99.6 1.5E-14 3.3E-19 114.6 9.9 151 39-202 1-163 (400)
90 PRK08641 sdhA succinate dehydr 99.6 4.2E-14 9.2E-19 116.9 12.7 166 35-202 3-203 (589)
91 PRK05732 2-octaprenyl-6-methox 99.6 1.2E-14 2.6E-19 115.2 9.1 148 34-200 2-170 (395)
92 PRK05945 sdhA succinate dehydr 99.6 3E-14 6.4E-19 117.7 11.7 167 34-202 2-200 (575)
93 TIGR01989 COQ6 Ubiquinone bios 99.6 1.6E-14 3.5E-19 115.8 9.8 158 36-201 1-185 (437)
94 PRK14694 putative mercuric red 99.6 4.7E-14 1E-18 114.1 12.5 149 32-207 3-158 (468)
95 PRK08205 sdhA succinate dehydr 99.6 5.5E-14 1.2E-18 116.2 13.0 166 34-202 4-209 (583)
96 TIGR00551 nadB L-aspartate oxi 99.6 5.5E-14 1.2E-18 114.1 12.6 162 35-201 2-191 (488)
97 PRK11728 hydroxyglutarate oxid 99.6 1.8E-14 4E-19 114.1 9.4 60 132-200 146-205 (393)
98 PRK06263 sdhA succinate dehydr 99.6 4.2E-14 9.1E-19 116.2 11.7 164 34-200 6-198 (543)
99 PRK05868 hypothetical protein; 99.6 3.5E-14 7.7E-19 111.6 10.7 155 36-201 2-162 (372)
100 PRK07573 sdhA succinate dehydr 99.6 4.8E-14 1E-18 117.4 12.0 167 34-202 34-235 (640)
101 PRK09231 fumarate reductase fl 99.6 5.5E-14 1.2E-18 116.1 12.1 167 34-202 3-199 (582)
102 TIGR01320 mal_quin_oxido malat 99.6 6.5E-14 1.4E-18 113.1 12.2 69 132-202 175-243 (483)
103 PLN02697 lycopene epsilon cycl 99.6 9.8E-14 2.1E-18 112.6 13.2 143 33-200 106-249 (529)
104 PF01946 Thi4: Thi4 family; PD 99.6 6.5E-14 1.4E-18 99.0 10.5 144 33-199 15-165 (230)
105 COG1635 THI4 Ribulose 1,5-bisp 99.6 1.2E-13 2.5E-18 97.4 11.7 142 34-198 29-177 (262)
106 TIGR03140 AhpF alkyl hydropero 99.5 1.8E-13 4E-18 111.8 14.6 120 33-207 210-329 (515)
107 PTZ00058 glutathione reductase 99.5 2.7E-14 5.9E-19 116.9 9.6 54 33-95 46-99 (561)
108 COG0492 TrxB Thioredoxin reduc 99.5 2.4E-13 5.2E-18 103.2 14.0 114 34-200 2-116 (305)
109 PRK08626 fumarate reductase fl 99.5 5.7E-14 1.2E-18 117.2 11.6 66 135-202 158-223 (657)
110 PRK01747 mnmC bifunctional tRN 99.5 8.1E-14 1.8E-18 117.1 12.6 64 131-203 404-467 (662)
111 PRK12409 D-amino acid dehydrog 99.5 1.9E-13 4.1E-18 108.9 14.2 66 133-201 195-260 (410)
112 TIGR01790 carotene-cycl lycope 99.5 9.4E-14 2E-18 109.9 12.0 141 37-199 1-141 (388)
113 PLN02463 lycopene beta cyclase 99.5 1.1E-13 2.4E-18 110.6 12.4 144 33-200 26-170 (447)
114 PRK06467 dihydrolipoamide dehy 99.5 7.1E-14 1.5E-18 113.0 11.4 42 34-75 3-44 (471)
115 PRK06370 mercuric reductase; V 99.5 7.6E-14 1.6E-18 112.8 11.5 42 33-75 3-44 (463)
116 PRK05257 malate:quinone oxidor 99.5 2E-13 4.2E-18 110.5 13.3 69 132-202 180-249 (494)
117 COG1249 Lpd Pyruvate/2-oxoglut 99.5 3.1E-14 6.8E-19 113.1 8.6 146 33-207 2-153 (454)
118 PRK06175 L-aspartate oxidase; 99.5 1.1E-13 2.4E-18 110.7 11.7 161 34-200 3-190 (433)
119 PRK05249 soluble pyridine nucl 99.5 1.5E-13 3.2E-18 111.1 12.5 44 33-76 3-46 (461)
120 TIGR03364 HpnW_proposed FAD de 99.5 6.6E-14 1.4E-18 109.9 10.2 60 132-204 142-202 (365)
121 PRK09077 L-aspartate oxidase; 99.5 1.9E-13 4.1E-18 112.1 13.1 167 33-202 6-210 (536)
122 PRK08275 putative oxidoreducta 99.5 1.6E-13 3.4E-18 113.0 12.7 166 34-201 8-202 (554)
123 PRK14727 putative mercuric red 99.5 1.8E-13 3.9E-18 111.0 12.6 44 33-76 14-57 (479)
124 PLN02507 glutathione reductase 99.5 1.2E-13 2.5E-18 112.4 11.5 149 33-207 23-185 (499)
125 PRK06116 glutathione reductase 99.5 6.3E-14 1.4E-18 112.9 9.7 142 34-207 3-149 (450)
126 TIGR01421 gluta_reduc_1 glutat 99.5 1.3E-13 2.9E-18 110.8 11.5 140 35-207 2-148 (450)
127 PRK10262 thioredoxin reductase 99.5 7.2E-13 1.6E-17 102.3 15.0 119 34-207 5-123 (321)
128 PRK06416 dihydrolipoamide dehy 99.5 1.6E-13 3.5E-18 111.0 11.6 42 34-76 3-44 (462)
129 TIGR03219 salicylate_mono sali 99.5 1.5E-13 3.2E-18 109.7 11.0 150 37-200 2-160 (414)
130 COG3380 Predicted NAD/FAD-depe 99.5 8.4E-14 1.8E-18 101.0 8.2 151 36-196 2-157 (331)
131 PTZ00306 NADH-dependent fumara 99.5 3.6E-13 7.8E-18 118.8 13.7 197 3-201 372-622 (1167)
132 PRK13748 putative mercuric red 99.5 3E-13 6.5E-18 111.9 12.5 51 34-93 97-147 (561)
133 PRK13339 malate:quinone oxidor 99.5 9.6E-13 2.1E-17 106.1 14.9 69 132-202 181-250 (497)
134 PRK08401 L-aspartate oxidase; 99.5 2.7E-13 5.8E-18 109.5 11.7 157 36-202 2-178 (466)
135 PRK08071 L-aspartate oxidase; 99.5 2.3E-13 4.9E-18 111.0 11.3 161 35-200 3-191 (510)
136 KOG2820 FAD-dependent oxidored 99.5 1.8E-13 4E-18 102.1 9.7 71 128-205 146-218 (399)
137 PF13454 NAD_binding_9: FAD-NA 99.5 1E-12 2.2E-17 90.9 12.8 142 39-197 1-155 (156)
138 PRK12834 putative FAD-binding 99.5 6.1E-13 1.3E-17 109.5 13.8 45 34-78 3-49 (549)
139 PTZ00383 malate:quinone oxidor 99.5 1.9E-13 4.2E-18 110.3 10.4 65 132-202 208-276 (497)
140 PF06039 Mqo: Malate:quinone o 99.5 3.9E-13 8.5E-18 104.9 11.4 67 135-203 181-248 (488)
141 PRK07395 L-aspartate oxidase; 99.5 1.6E-13 3.5E-18 112.6 9.7 164 33-201 7-199 (553)
142 PLN02546 glutathione reductase 99.5 5.5E-14 1.2E-18 115.1 6.7 144 33-207 77-234 (558)
143 PF13434 K_oxygenase: L-lysine 99.5 1.9E-13 4.1E-18 105.8 9.3 151 35-205 2-163 (341)
144 TIGR01373 soxB sarcosine oxida 99.5 5.2E-13 1.1E-17 106.3 12.1 61 132-200 180-241 (407)
145 TIGR02061 aprA adenosine phosp 99.5 6.2E-13 1.4E-17 109.9 12.8 165 37-204 1-196 (614)
146 PRK05976 dihydrolipoamide dehy 99.5 4.5E-13 9.8E-18 108.6 11.7 41 34-75 3-43 (472)
147 KOG4716 Thioredoxin reductase 99.5 7.1E-13 1.5E-17 99.2 11.4 159 32-207 16-179 (503)
148 PLN02661 Putative thiazole syn 99.5 1.1E-12 2.4E-17 100.4 12.7 142 33-199 90-244 (357)
149 PRK08010 pyridine nucleotide-d 99.5 3.1E-13 6.6E-18 108.7 10.2 41 35-75 3-44 (441)
150 PF05834 Lycopene_cycl: Lycope 99.5 1E-12 2.2E-17 103.4 12.7 140 37-200 1-143 (374)
151 TIGR01811 sdhA_Bsu succinate d 99.5 8.1E-13 1.8E-17 109.5 12.5 163 38-202 1-199 (603)
152 PRK12845 3-ketosteroid-delta-1 99.5 9.2E-13 2E-17 108.4 12.6 46 33-79 14-59 (564)
153 PRK07512 L-aspartate oxidase; 99.5 4.8E-13 1E-17 109.1 10.9 163 33-201 7-199 (513)
154 KOG1298 Squalene monooxygenase 99.5 1.2E-13 2.7E-18 104.7 6.7 162 32-201 42-210 (509)
155 PRK07251 pyridine nucleotide-d 99.5 7.3E-13 1.6E-17 106.4 11.6 41 35-75 3-44 (438)
156 TIGR00136 gidA glucose-inhibit 99.5 1.8E-12 3.9E-17 105.7 13.8 153 36-200 1-155 (617)
157 PRK12835 3-ketosteroid-delta-1 99.5 1.2E-12 2.6E-17 108.3 13.0 45 33-77 9-53 (584)
158 PRK00711 D-amino acid dehydrog 99.5 1.2E-12 2.6E-17 104.6 12.5 62 133-202 199-260 (416)
159 TIGR01423 trypano_reduc trypan 99.5 2.3E-13 5E-18 110.1 8.4 55 34-96 2-65 (486)
160 TIGR02053 MerA mercuric reduct 99.5 3.7E-13 8E-18 108.9 9.5 39 36-75 1-39 (463)
161 PTZ00052 thioredoxin reductase 99.5 2.1E-13 4.7E-18 110.9 8.1 33 35-67 5-37 (499)
162 PRK12839 hypothetical protein; 99.5 4.2E-12 9E-17 104.8 15.7 46 33-78 6-51 (572)
163 TIGR01350 lipoamide_DH dihydro 99.5 7.4E-13 1.6E-17 107.1 11.1 40 35-75 1-40 (461)
164 PRK06134 putative FAD-binding 99.5 8.4E-13 1.8E-17 109.3 11.5 62 135-200 217-279 (581)
165 PRK12844 3-ketosteroid-delta-1 99.5 1.6E-12 3.4E-17 107.1 13.1 62 135-200 208-270 (557)
166 PRK12842 putative succinate de 99.5 9.9E-13 2.2E-17 108.8 11.8 45 34-78 8-52 (574)
167 PRK06115 dihydrolipoamide dehy 99.4 1.7E-12 3.7E-17 105.0 12.3 52 35-94 3-54 (466)
168 PLN02927 antheraxanthin epoxid 99.4 1E-12 2.3E-17 108.7 11.0 159 33-201 79-250 (668)
169 PF01134 GIDA: Glucose inhibit 99.4 1E-13 2.2E-18 107.5 4.6 145 37-198 1-151 (392)
170 PRK09897 hypothetical protein; 99.4 1.4E-12 3E-17 106.0 11.2 152 36-198 2-165 (534)
171 COG0665 DadA Glycine/D-amino a 99.4 2.4E-12 5.2E-17 101.8 12.2 62 132-201 153-214 (387)
172 PRK06327 dihydrolipoamide dehy 99.4 1.7E-12 3.7E-17 105.2 11.3 145 34-202 3-158 (475)
173 PRK12837 3-ketosteroid-delta-1 99.4 5.6E-12 1.2E-16 103.0 14.1 43 34-77 6-48 (513)
174 PRK12843 putative FAD-binding 99.4 7.6E-12 1.7E-16 103.6 15.1 48 32-79 13-60 (578)
175 PTZ00367 squalene epoxidase; P 99.4 1.3E-12 2.8E-17 107.2 10.3 35 34-68 32-66 (567)
176 KOG2415 Electron transfer flav 99.4 5.1E-12 1.1E-16 97.1 12.3 165 33-199 74-256 (621)
177 COG1053 SdhA Succinate dehydro 99.4 1.5E-12 3.2E-17 106.4 9.9 166 32-199 3-202 (562)
178 TIGR01438 TGR thioredoxin and 99.4 1.7E-12 3.8E-17 105.2 9.1 61 35-96 2-63 (484)
179 KOG1335 Dihydrolipoamide dehyd 99.4 2.6E-11 5.7E-16 92.2 14.1 65 135-203 252-316 (506)
180 PRK13800 putative oxidoreducta 99.4 8.3E-12 1.8E-16 108.0 12.9 167 33-201 11-207 (897)
181 PRK07843 3-ketosteroid-delta-1 99.4 1.6E-11 3.5E-16 101.2 14.0 61 136-200 209-270 (557)
182 KOG2614 Kynurenine 3-monooxyge 99.4 3.7E-12 7.9E-17 97.8 8.9 36 35-70 2-37 (420)
183 PRK06292 dihydrolipoamide dehy 99.4 3.3E-12 7.2E-17 103.3 8.9 41 34-75 2-42 (460)
184 PRK07818 dihydrolipoamide dehy 99.4 2.8E-12 6E-17 103.8 8.2 40 35-75 4-43 (466)
185 COG0029 NadB Aspartate oxidase 99.3 3.4E-12 7.5E-17 100.0 8.0 162 37-202 9-199 (518)
186 COG0445 GidA Flavin-dependent 99.3 5.4E-12 1.2E-16 100.0 8.2 156 35-201 4-160 (621)
187 KOG0405 Pyridine nucleotide-di 99.3 1.7E-11 3.8E-16 92.1 10.3 148 34-207 19-171 (478)
188 PRK07846 mycothione reductase; 99.3 7.4E-12 1.6E-16 100.8 8.2 50 35-95 1-50 (451)
189 TIGR02485 CobZ_N-term precorri 99.3 2E-11 4.3E-16 98.0 10.6 61 134-200 122-184 (432)
190 TIGR01372 soxA sarcosine oxida 99.3 8.1E-11 1.8E-15 102.8 15.0 42 34-75 162-203 (985)
191 KOG2404 Fumarate reductase, fl 99.3 1.2E-11 2.7E-16 92.1 8.4 162 37-200 11-207 (477)
192 TIGR01789 lycopene_cycl lycope 99.3 4.6E-11 9.9E-16 93.9 12.0 36 37-72 1-38 (370)
193 COG4529 Uncharacterized protei 99.3 7E-11 1.5E-15 92.8 12.6 154 36-199 2-164 (474)
194 PRK06912 acoL dihydrolipoamide 99.3 8.7E-12 1.9E-16 100.7 7.8 49 37-94 2-50 (458)
195 PRK07845 flavoprotein disulfid 99.3 4.7E-11 1E-15 96.7 11.9 144 36-205 2-155 (466)
196 PTZ00153 lipoamide dehydrogena 99.3 9.6E-12 2.1E-16 103.5 8.1 54 35-96 116-170 (659)
197 PF00070 Pyr_redox: Pyridine n 99.3 1.8E-10 3.8E-15 70.5 11.6 80 37-178 1-80 (80)
198 KOG0042 Glycerol-3-phosphate d 99.3 9.2E-13 2E-17 103.8 1.4 166 32-201 64-289 (680)
199 PRK13977 myosin-cross-reactive 99.3 2.3E-10 5E-15 92.9 14.8 65 135-201 226-295 (576)
200 TIGR03452 mycothione_red mycot 99.3 5.1E-11 1.1E-15 96.1 10.9 50 35-95 2-51 (452)
201 PRK12779 putative bifunctional 99.3 6.2E-11 1.4E-15 102.5 11.9 107 34-207 305-411 (944)
202 PRK12831 putative oxidoreducta 99.3 2.8E-11 6E-16 97.7 9.2 43 33-75 138-180 (464)
203 PRK13512 coenzyme A disulfide 99.3 1.3E-10 2.8E-15 93.4 12.9 117 37-206 3-122 (438)
204 PRK09564 coenzyme A disulfide 99.3 9.1E-11 2E-15 94.6 11.8 118 37-207 2-121 (444)
205 PF04820 Trp_halogenase: Trypt 99.3 2.5E-11 5.4E-16 97.6 8.4 61 132-200 151-212 (454)
206 KOG2844 Dimethylglycine dehydr 99.2 4.1E-11 8.9E-16 96.8 9.2 63 131-201 183-245 (856)
207 KOG2852 Possible oxidoreductas 99.2 5.4E-11 1.2E-15 87.3 8.7 171 34-207 9-216 (380)
208 PF07992 Pyr_redox_2: Pyridine 99.2 1.4E-11 3E-16 88.8 5.2 119 37-207 1-128 (201)
209 COG1233 Phytoene dehydrogenase 99.2 3.2E-10 6.9E-15 92.2 13.5 57 134-197 223-279 (487)
210 PTZ00318 NADH dehydrogenase-li 99.2 2.5E-10 5.3E-15 91.5 12.5 122 32-207 7-131 (424)
211 PRK08255 salicylyl-CoA 5-hydro 99.2 2.9E-11 6.3E-16 103.1 6.6 137 37-201 2-143 (765)
212 PLN02852 ferredoxin-NADP+ redu 99.2 2.2E-10 4.7E-15 92.4 10.5 43 33-75 24-68 (491)
213 TIGR01316 gltA glutamate synth 99.2 1.5E-10 3.2E-15 93.3 8.8 41 34-74 132-172 (449)
214 PRK04965 NADH:flavorubredoxin 99.2 4.2E-10 9.1E-15 88.9 11.2 112 36-207 3-117 (377)
215 TIGR02730 carot_isom carotene 99.2 6.4E-10 1.4E-14 90.8 12.6 59 135-200 229-287 (493)
216 KOG2853 Possible oxidoreductas 99.2 1.1E-09 2.3E-14 82.6 12.5 38 33-70 84-125 (509)
217 PF00732 GMC_oxred_N: GMC oxid 99.1 4.9E-11 1.1E-15 91.1 4.9 64 136-201 194-260 (296)
218 PRK12770 putative glutamate sy 99.1 4.4E-10 9.5E-15 87.9 9.8 41 34-74 17-57 (352)
219 PRK09853 putative selenate red 99.1 9.7E-10 2.1E-14 94.6 12.1 42 34-75 538-579 (1019)
220 PRK09754 phenylpropionate diox 99.1 1.2E-09 2.7E-14 86.8 11.4 35 35-69 3-39 (396)
221 PF13450 NAD_binding_8: NAD(P) 99.1 1.7E-10 3.7E-15 68.0 4.9 36 40-75 1-36 (68)
222 PRK12778 putative bifunctional 99.1 5.3E-10 1.1E-14 95.5 9.4 42 34-75 430-471 (752)
223 PRK12775 putative trifunctiona 99.1 4.3E-10 9.4E-15 98.1 8.6 41 34-74 429-469 (1006)
224 COG3634 AhpF Alkyl hydroperoxi 99.1 4.8E-10 1E-14 84.6 7.6 117 33-201 209-327 (520)
225 PRK11749 dihydropyrimidine deh 99.1 9.3E-10 2E-14 89.0 9.9 41 34-74 139-179 (457)
226 TIGR03169 Nterm_to_SelD pyridi 99.1 1.2E-09 2.5E-14 85.9 10.0 110 37-207 1-113 (364)
227 COG1249 Lpd Pyruvate/2-oxoglut 99.1 6.6E-09 1.4E-13 83.1 13.7 105 33-204 171-275 (454)
228 TIGR03378 glycerol3P_GlpB glyc 99.0 1.5E-08 3.3E-13 79.9 14.3 64 135-203 263-327 (419)
229 COG3486 IucD Lysine/ornithine 99.0 4.7E-09 1E-13 80.9 10.9 156 33-206 3-162 (436)
230 PRK12810 gltD glutamate syntha 99.0 2.1E-09 4.6E-14 87.2 9.7 41 34-74 142-182 (471)
231 TIGR03315 Se_ygfK putative sel 99.0 2.6E-09 5.7E-14 92.3 10.6 42 34-75 536-577 (1012)
232 PRK14989 nitrite reductase sub 99.0 3.6E-09 7.9E-14 90.9 11.4 112 36-207 4-119 (847)
233 KOG2311 NAD/FAD-utilizing prot 99.0 1.8E-09 3.9E-14 84.6 8.6 152 33-200 26-187 (679)
234 TIGR02374 nitri_red_nirB nitri 99.0 2.6E-09 5.6E-14 91.5 10.0 111 38-207 1-114 (785)
235 TIGR02053 MerA mercuric reduct 99.0 1.9E-08 4.1E-13 81.6 14.1 100 35-198 166-265 (463)
236 COG3075 GlpB Anaerobic glycero 99.0 7.5E-09 1.6E-13 77.6 10.7 58 136-198 259-316 (421)
237 PRK05329 anaerobic glycerol-3- 99.0 2.7E-08 5.9E-13 79.2 14.5 60 136-201 260-320 (422)
238 TIGR02462 pyranose_ox pyranose 99.0 1E-08 2.2E-13 83.7 12.4 37 36-72 1-37 (544)
239 PRK02106 choline dehydrogenase 99.0 3.2E-09 7E-14 88.0 9.7 62 139-203 205-266 (560)
240 PRK04965 NADH:flavorubredoxin 99.0 1.5E-08 3.2E-13 80.1 13.0 100 35-200 141-240 (377)
241 KOG0404 Thioredoxin reductase 99.0 9.4E-09 2E-13 73.2 10.5 117 33-201 6-126 (322)
242 PRK06416 dihydrolipoamide dehy 99.0 2.1E-08 4.5E-13 81.4 14.1 101 35-199 172-272 (462)
243 PRK05976 dihydrolipoamide dehy 99.0 2.1E-08 4.5E-13 81.6 14.1 100 35-198 180-280 (472)
244 PRK06115 dihydrolipoamide dehy 99.0 3.1E-08 6.7E-13 80.4 14.9 102 35-198 174-275 (466)
245 TIGR01350 lipoamide_DH dihydro 99.0 2.1E-08 4.5E-13 81.4 13.9 100 35-199 170-269 (461)
246 COG1231 Monoamine oxidase [Ami 99.0 2.1E-08 4.6E-13 78.5 12.8 43 33-75 5-47 (450)
247 PRK12769 putative oxidoreducta 99.0 3.7E-09 8.1E-14 89.0 9.2 42 34-75 326-367 (654)
248 PRK07818 dihydrolipoamide dehy 99.0 3.8E-08 8.3E-13 79.9 14.6 101 35-198 172-272 (466)
249 TIGR01318 gltD_gamma_fam gluta 99.0 5.2E-09 1.1E-13 84.8 9.6 41 34-74 140-180 (467)
250 PRK05249 soluble pyridine nucl 99.0 2.9E-08 6.4E-13 80.5 13.9 99 35-200 175-273 (461)
251 PRK12814 putative NADPH-depend 98.9 4.3E-09 9.4E-14 88.5 9.2 42 34-75 192-233 (652)
252 COG1232 HemY Protoporphyrinoge 98.9 9.3E-09 2E-13 81.7 10.3 37 37-73 2-40 (444)
253 PRK06370 mercuric reductase; V 98.9 4.6E-08 9.9E-13 79.4 14.6 100 35-198 171-270 (463)
254 PRK06116 glutathione reductase 98.9 4.1E-08 8.9E-13 79.4 13.7 98 35-198 167-264 (450)
255 PRK06327 dihydrolipoamide dehy 98.9 6.2E-08 1.3E-12 78.9 14.5 101 35-198 183-283 (475)
256 PRK07251 pyridine nucleotide-d 98.9 4.2E-08 9.1E-13 79.1 13.4 96 35-198 157-252 (438)
257 TIGR01317 GOGAT_sm_gam glutama 98.9 1E-08 2.2E-13 83.5 9.5 40 35-74 143-182 (485)
258 PRK06912 acoL dihydrolipoamide 98.9 6.1E-08 1.3E-12 78.6 13.8 99 35-199 170-268 (458)
259 COG3573 Predicted oxidoreducta 98.9 1.4E-08 3.1E-13 76.5 9.2 41 33-73 3-45 (552)
260 TIGR03862 flavo_PP4765 unchara 98.9 1.2E-08 2.6E-13 79.8 9.2 135 58-203 1-145 (376)
261 TIGR01421 gluta_reduc_1 glutat 98.9 5.7E-08 1.2E-12 78.5 13.5 100 35-199 166-265 (450)
262 PRK09754 phenylpropionate diox 98.9 4.5E-08 9.7E-13 77.9 12.6 98 35-199 144-241 (396)
263 KOG0029 Amine oxidase [Seconda 98.9 3.1E-09 6.8E-14 86.0 5.8 44 33-76 13-56 (501)
264 PRK06467 dihydrolipoamide dehy 98.9 8.2E-08 1.8E-12 78.0 13.7 101 35-199 174-274 (471)
265 PRK12809 putative oxidoreducta 98.9 1.3E-08 2.9E-13 85.5 8.8 42 34-75 309-350 (639)
266 PTZ00188 adrenodoxin reductase 98.9 2.6E-08 5.5E-13 79.9 9.9 42 34-75 38-80 (506)
267 PRK13984 putative oxidoreducta 98.8 2.1E-08 4.5E-13 83.9 9.4 42 34-75 282-323 (604)
268 PLN02507 glutathione reductase 98.8 1.4E-07 3.1E-12 77.1 13.9 99 35-200 203-301 (499)
269 TIGR01424 gluta_reduc_2 glutat 98.8 1.5E-07 3.2E-12 76.1 13.6 98 35-199 166-263 (446)
270 TIGR00137 gid_trmFO tRNA:m(5)U 98.8 3.9E-08 8.5E-13 77.9 9.9 35 37-71 2-36 (433)
271 PRK07845 flavoprotein disulfid 98.8 1.7E-07 3.8E-12 76.1 13.7 99 35-200 177-275 (466)
272 COG2303 BetA Choline dehydroge 98.8 6.3E-08 1.4E-12 79.8 11.1 63 139-203 207-270 (542)
273 PRK07208 hypothetical protein; 98.8 7.8E-09 1.7E-13 84.2 5.8 42 34-75 3-44 (479)
274 PRK08010 pyridine nucleotide-d 98.8 1.4E-07 3E-12 76.2 12.9 98 35-200 158-255 (441)
275 PRK06567 putative bifunctional 98.8 3E-08 6.5E-13 85.0 9.2 40 33-72 381-420 (1028)
276 TIGR01810 betA choline dehydro 98.8 3E-08 6.5E-13 81.8 9.1 64 137-203 196-259 (532)
277 PRK07846 mycothione reductase; 98.8 1.9E-07 4E-12 75.6 13.2 98 35-200 166-263 (451)
278 COG1252 Ndh NADH dehydrogenase 98.8 6.7E-08 1.5E-12 75.8 10.2 112 35-207 3-117 (405)
279 COG1252 Ndh NADH dehydrogenase 98.8 4.7E-08 1E-12 76.7 9.4 98 36-203 156-266 (405)
280 KOG3855 Monooxygenase involved 98.8 6.7E-08 1.5E-12 74.7 9.9 160 33-201 34-219 (481)
281 PTZ00058 glutathione reductase 98.8 2.3E-07 5.1E-12 76.6 13.7 99 35-198 237-335 (561)
282 PRK06292 dihydrolipoamide dehy 98.8 2.8E-07 6E-12 74.8 13.6 98 35-197 169-266 (460)
283 PLN02785 Protein HOTHEAD 98.8 4.9E-08 1.1E-12 81.0 9.2 35 33-68 53-87 (587)
284 TIGR01423 trypano_reduc trypan 98.8 3.3E-07 7.1E-12 74.7 13.6 99 35-199 187-288 (486)
285 PRK09564 coenzyme A disulfide 98.8 1.9E-07 4.2E-12 75.4 12.2 98 35-199 149-246 (444)
286 PRK12771 putative glutamate sy 98.7 6.4E-08 1.4E-12 80.4 9.3 41 34-74 136-176 (564)
287 TIGR01438 TGR thioredoxin and 98.7 4E-07 8.7E-12 74.2 13.8 99 35-198 180-278 (484)
288 PLN02268 probable polyamine ox 98.7 1.7E-08 3.6E-13 81.3 5.6 41 36-76 1-41 (435)
289 COG2509 Uncharacterized FAD-de 98.7 9.4E-08 2E-12 74.8 9.4 59 135-200 173-231 (486)
290 PLN02576 protoporphyrinogen ox 98.7 1.8E-08 3.8E-13 82.5 5.6 42 34-75 11-53 (496)
291 KOG2665 Predicted FAD-dependen 98.7 1.5E-07 3.2E-12 70.5 9.7 64 132-200 193-258 (453)
292 TIGR03385 CoA_CoA_reduc CoA-di 98.7 3.2E-07 6.9E-12 73.8 12.4 97 35-199 137-233 (427)
293 PRK07233 hypothetical protein; 98.7 2E-08 4.4E-13 80.7 5.4 38 37-74 1-38 (434)
294 PTZ00363 rab-GDP dissociation 98.7 1.9E-08 4.1E-13 80.6 5.0 43 33-75 2-44 (443)
295 TIGR00562 proto_IX_ox protopor 98.7 2.3E-08 4.9E-13 81.1 5.5 40 36-75 3-46 (462)
296 PRK14727 putative mercuric red 98.7 4.2E-07 9E-12 74.1 12.7 97 35-200 188-284 (479)
297 PF13434 K_oxygenase: L-lysine 98.7 1.7E-07 3.8E-12 72.8 10.0 43 154-196 296-338 (341)
298 TIGR02374 nitri_red_nirB nitri 98.7 3.3E-07 7.2E-12 78.8 12.5 98 36-199 141-238 (785)
299 PRK11883 protoporphyrinogen ox 98.7 2.4E-08 5.1E-13 80.7 5.3 39 37-75 2-42 (451)
300 TIGR02733 desat_CrtD C-3',4' d 98.7 2.5E-08 5.5E-13 81.5 5.4 62 135-198 232-293 (492)
301 TIGR03140 AhpF alkyl hydropero 98.7 4.7E-07 1E-11 74.5 12.7 97 35-198 352-449 (515)
302 TIGR00031 UDP-GALP_mutase UDP- 98.7 3.2E-08 6.9E-13 77.6 5.6 40 36-75 2-41 (377)
303 PLN02568 polyamine oxidase 98.7 3.4E-08 7.3E-13 81.2 6.0 43 33-75 3-50 (539)
304 TIGR03452 mycothione_red mycot 98.7 6.8E-07 1.5E-11 72.4 13.3 97 35-199 169-265 (452)
305 PRK14694 putative mercuric red 98.7 5.8E-07 1.3E-11 73.1 13.0 97 35-200 178-274 (468)
306 PRK05675 sdhA succinate dehydr 98.7 1.2E-07 2.7E-12 78.6 9.2 66 134-201 125-191 (570)
307 PRK13512 coenzyme A disulfide 98.7 3.3E-07 7.2E-12 73.9 11.2 94 35-199 148-241 (438)
308 COG1148 HdrA Heterodisulfide r 98.7 8.8E-08 1.9E-12 75.5 7.5 42 34-75 123-164 (622)
309 TIGR01292 TRX_reduct thioredox 98.6 6.5E-07 1.4E-11 68.4 11.7 96 35-198 141-237 (300)
310 PTZ00153 lipoamide dehydrogena 98.6 1.1E-06 2.4E-11 73.8 13.7 103 35-198 312-426 (659)
311 PRK13748 putative mercuric red 98.6 8.5E-07 1.8E-11 73.8 13.1 96 35-199 270-365 (561)
312 TIGR02734 crtI_fam phytoene de 98.6 3.6E-08 7.7E-13 80.8 4.8 56 135-197 219-274 (502)
313 PTZ00052 thioredoxin reductase 98.6 9.8E-07 2.1E-11 72.3 13.1 98 35-200 182-279 (499)
314 PRK14989 nitrite reductase sub 98.6 7.2E-07 1.6E-11 77.0 12.7 101 35-200 145-246 (847)
315 TIGR03197 MnmC_Cterm tRNA U-34 98.6 1.7E-07 3.7E-12 74.2 8.4 65 131-204 131-195 (381)
316 PTZ00318 NADH dehydrogenase-li 98.6 9.4E-07 2E-11 71.0 11.9 93 37-200 175-281 (424)
317 COG0446 HcaD Uncharacterized N 98.6 9.9E-07 2.2E-11 70.3 12.0 100 35-199 136-237 (415)
318 TIGR03377 glycerol3P_GlpA glyc 98.6 2.6E-07 5.7E-12 76.0 8.6 70 131-202 124-193 (516)
319 COG0562 Glf UDP-galactopyranos 98.6 8.9E-08 1.9E-12 71.8 5.2 41 36-76 2-42 (374)
320 PLN02546 glutathione reductase 98.6 1.4E-06 3.1E-11 72.0 12.6 100 35-200 252-351 (558)
321 PRK10262 thioredoxin reductase 98.6 2E-06 4.3E-11 66.6 12.3 102 35-199 146-248 (321)
322 PRK15317 alkyl hydroperoxide r 98.6 1.4E-06 3E-11 71.7 12.1 97 36-199 352-449 (517)
323 PRK12416 protoporphyrinogen ox 98.5 1.2E-07 2.7E-12 76.9 5.3 40 36-75 2-47 (463)
324 KOG1800 Ferredoxin/adrenodoxin 98.5 6.6E-07 1.4E-11 68.7 8.5 42 34-75 19-62 (468)
325 COG0493 GltD NADPH-dependent g 98.5 3.5E-07 7.6E-12 73.4 7.5 97 35-198 123-219 (457)
326 PLN02676 polyamine oxidase 98.5 1.5E-07 3.2E-12 76.7 5.4 43 33-75 24-67 (487)
327 TIGR02731 phytoene_desat phyto 98.5 1.3E-07 2.8E-12 76.6 5.1 38 37-74 1-38 (453)
328 PRK05335 tRNA (uracil-5-)-meth 98.5 1.6E-07 3.5E-12 74.2 5.1 35 36-70 3-37 (436)
329 COG3349 Uncharacterized conser 98.5 1.5E-07 3.3E-12 74.9 5.0 39 37-75 2-40 (485)
330 TIGR02352 thiamin_ThiO glycine 98.5 6.2E-07 1.3E-11 69.6 7.3 66 130-203 132-197 (337)
331 KOG4254 Phytoene desaturase [C 98.4 9.3E-07 2E-11 69.3 7.3 58 135-199 264-321 (561)
332 TIGR02732 zeta_caro_desat caro 98.4 4.3E-07 9.3E-12 73.9 5.4 39 37-75 1-39 (474)
333 PLN02328 lysine-specific histo 98.4 5.1E-07 1.1E-11 76.9 5.7 43 33-75 236-278 (808)
334 TIGR01816 sdhA_forward succina 98.4 1.9E-06 4.1E-11 71.6 9.0 67 134-202 118-184 (565)
335 PLN02529 lysine-specific histo 98.4 5.2E-07 1.1E-11 76.3 5.5 42 34-75 159-200 (738)
336 KOG1336 Monodehydroascorbate/f 98.4 7.1E-06 1.5E-10 64.8 11.0 104 35-205 213-317 (478)
337 KOG0685 Flavin-containing amin 98.4 8.2E-07 1.8E-11 70.0 5.8 43 33-75 19-62 (498)
338 PLN02612 phytoene desaturase 98.3 1.4E-06 3.1E-11 72.4 6.4 41 34-74 92-132 (567)
339 KOG1276 Protoporphyrinogen oxi 98.3 1.4E-06 3E-11 67.9 5.7 43 34-76 10-54 (491)
340 KOG3923 D-aspartate oxidase [A 98.3 3E-06 6.5E-11 63.0 6.7 51 132-202 148-198 (342)
341 PLN02487 zeta-carotene desatur 98.3 2.3E-06 4.9E-11 70.8 6.4 40 35-74 75-114 (569)
342 KOG2960 Protein involved in th 98.3 9.5E-07 2.1E-11 62.7 3.6 41 35-75 76-119 (328)
343 PF06100 Strep_67kDa_ant: Stre 98.3 3.4E-05 7.3E-10 61.8 12.5 40 36-75 3-46 (500)
344 TIGR01316 gltA glutamate synth 98.3 1.3E-05 2.9E-10 64.9 10.6 98 36-198 273-386 (449)
345 PRK12770 putative glutamate sy 98.2 1.5E-05 3.2E-10 62.6 10.4 32 36-67 173-205 (352)
346 COG2907 Predicted NAD/FAD-bind 98.2 1.5E-06 3.3E-11 66.1 4.3 38 35-73 8-45 (447)
347 KOG1336 Monodehydroascorbate/f 98.2 1.1E-05 2.3E-10 63.9 8.9 112 35-207 74-187 (478)
348 PLN03000 amine oxidase 98.2 2.7E-06 5.8E-11 72.8 5.4 42 34-75 183-224 (881)
349 PRK11749 dihydropyrimidine deh 98.2 5.8E-05 1.3E-09 61.4 12.4 101 35-200 273-388 (457)
350 KOG2495 NADH-dehydrogenase (ub 98.2 6.7E-06 1.5E-10 64.2 6.5 104 34-204 217-334 (491)
351 TIGR03143 AhpF_homolog putativ 98.1 4.3E-05 9.3E-10 63.6 11.5 34 35-68 143-176 (555)
352 PRK12831 putative oxidoreducta 98.1 3.5E-05 7.7E-10 62.7 10.5 33 35-67 281-313 (464)
353 TIGR03169 Nterm_to_SelD pyridi 98.1 6.5E-05 1.4E-09 59.2 11.6 92 36-199 146-243 (364)
354 PLN02976 amine oxidase 98.1 5.1E-06 1.1E-10 74.1 5.4 43 34-76 692-734 (1713)
355 KOG0399 Glutamate synthase [Am 98.1 5E-06 1.1E-10 71.9 4.5 44 34-77 1784-1827(2142)
356 COG1206 Gid NAD(FAD)-utilizing 98.0 1.7E-05 3.7E-10 60.1 6.4 36 35-70 3-38 (439)
357 COG3486 IucD Lysine/ornithine 98.0 7.8E-05 1.7E-09 58.1 9.9 45 154-198 295-339 (436)
358 KOG1238 Glucose dehydrogenase/ 98.0 1.1E-05 2.5E-10 66.1 5.3 39 32-70 54-93 (623)
359 PRK12810 gltD glutamate syntha 98.0 0.00016 3.4E-09 59.1 11.6 110 35-199 281-400 (471)
360 KOG2495 NADH-dehydrogenase (ub 98.0 0.00017 3.7E-09 56.6 11.0 124 32-207 52-176 (491)
361 COG1251 NirB NAD(P)H-nitrite r 97.9 0.00012 2.7E-09 61.0 10.0 114 35-207 3-119 (793)
362 TIGR01372 soxA sarcosine oxida 97.9 0.00032 6.9E-09 62.3 12.3 93 35-198 317-410 (985)
363 PF00996 GDI: GDP dissociation 97.8 3.7E-05 8.1E-10 61.4 5.0 44 33-76 2-45 (438)
364 PRK12778 putative bifunctional 97.8 0.00026 5.6E-09 61.1 10.2 32 36-67 571-603 (752)
365 TIGR03385 CoA_CoA_reduc CoA-di 97.7 0.00036 7.8E-09 56.3 9.1 56 143-207 52-109 (427)
366 PRK12769 putative oxidoreducta 97.6 0.0017 3.7E-08 55.3 12.5 32 36-67 469-501 (654)
367 PRK12814 putative NADPH-depend 97.6 0.0016 3.4E-08 55.4 11.7 33 35-67 323-356 (652)
368 PRK12779 putative bifunctional 97.5 0.0024 5.2E-08 56.4 12.7 33 35-67 447-479 (944)
369 TIGR01318 gltD_gamma_fam gluta 97.5 0.0024 5.2E-08 52.2 11.9 34 35-68 282-316 (467)
370 KOG3851 Sulfide:quinone oxidor 97.5 0.00059 1.3E-08 51.8 7.1 36 33-68 37-74 (446)
371 COG0492 TrxB Thioredoxin reduc 97.4 0.0037 8E-08 48.0 11.3 94 35-198 143-237 (305)
372 KOG2755 Oxidoreductase [Genera 97.4 0.00013 2.9E-09 53.6 3.0 33 37-69 1-35 (334)
373 COG1251 NirB NAD(P)H-nitrite r 97.4 0.00047 1E-08 57.8 6.5 99 34-198 144-242 (793)
374 PLN02172 flavin-containing mon 97.4 0.00096 2.1E-08 54.3 7.7 34 35-68 204-237 (461)
375 PF01210 NAD_Gly3P_dh_N: NAD-d 97.4 0.00033 7.1E-09 48.5 4.3 32 37-68 1-32 (157)
376 COG3634 AhpF Alkyl hydroperoxi 97.3 0.0038 8.2E-08 48.2 10.0 95 35-196 354-449 (520)
377 PF00743 FMO-like: Flavin-bind 97.3 0.001 2.2E-08 55.1 7.0 35 34-68 182-216 (531)
378 PF02737 3HCDH_N: 3-hydroxyacy 97.2 0.00058 1.3E-08 48.3 4.7 32 37-68 1-32 (180)
379 PRK12775 putative trifunctiona 97.2 0.0041 8.8E-08 55.4 10.0 33 35-67 571-604 (1006)
380 TIGR01317 GOGAT_sm_gam glutama 97.1 0.022 4.8E-07 46.9 13.0 34 35-68 283-317 (485)
381 PF02558 ApbA: Ketopantoate re 97.1 0.0012 2.5E-08 45.2 4.8 31 38-68 1-31 (151)
382 COG0446 HcaD Uncharacterized N 97.1 0.0054 1.2E-07 48.9 9.2 44 146-200 64-107 (415)
383 PF01593 Amino_oxidase: Flavin 97.0 0.00069 1.5E-08 54.1 3.9 52 139-198 213-264 (450)
384 PRK06249 2-dehydropantoate 2-r 97.0 0.0015 3.1E-08 50.6 5.4 33 36-68 6-38 (313)
385 PF03721 UDPG_MGDP_dh_N: UDP-g 97.0 0.001 2.2E-08 47.3 4.1 32 37-68 2-33 (185)
386 PRK13984 putative oxidoreducta 97.0 0.016 3.4E-07 49.1 11.9 24 35-58 418-441 (604)
387 PRK12809 putative oxidoreducta 97.0 0.019 4E-07 49.0 12.2 33 35-67 451-484 (639)
388 KOG4405 GDP dissociation inhib 97.0 0.00089 1.9E-08 52.4 3.8 45 32-76 5-49 (547)
389 PRK12771 putative glutamate sy 96.9 0.013 2.9E-07 49.1 10.7 33 35-67 267-300 (564)
390 KOG0405 Pyridine nucleotide-di 96.9 0.0073 1.6E-07 46.7 8.1 99 33-197 187-285 (478)
391 PRK09853 putative selenate red 96.9 0.017 3.7E-07 51.2 11.2 34 35-68 668-703 (1019)
392 TIGR03315 Se_ygfK putative sel 96.9 0.027 5.8E-07 50.1 12.2 34 35-68 666-701 (1012)
393 PRK01438 murD UDP-N-acetylmura 96.8 0.002 4.4E-08 52.8 5.1 34 35-68 16-49 (480)
394 KOG4716 Thioredoxin reductase 96.8 0.0043 9.4E-08 47.7 6.3 102 35-198 198-299 (503)
395 PRK07819 3-hydroxybutyryl-CoA 96.8 0.0028 6.1E-08 48.3 5.1 34 36-69 6-39 (286)
396 PRK06129 3-hydroxyacyl-CoA deh 96.8 0.0021 4.6E-08 49.5 4.5 33 37-69 4-36 (308)
397 COG0569 TrkA K+ transport syst 96.8 0.0024 5.3E-08 46.9 4.4 32 37-68 2-33 (225)
398 PRK02705 murD UDP-N-acetylmura 96.7 0.0026 5.7E-08 51.8 4.8 34 37-70 2-35 (459)
399 PF13738 Pyr_redox_3: Pyridine 96.7 0.0032 7E-08 45.2 4.5 35 34-68 166-200 (203)
400 PRK08293 3-hydroxybutyryl-CoA 96.7 0.0033 7.2E-08 48.0 4.7 33 36-68 4-36 (287)
401 PRK05708 2-dehydropantoate 2-r 96.6 0.0036 7.8E-08 48.2 4.8 33 36-68 3-35 (305)
402 PRK07530 3-hydroxybutyryl-CoA 96.6 0.0042 9.2E-08 47.5 5.1 33 36-68 5-37 (292)
403 PF13241 NAD_binding_7: Putati 96.6 0.0027 5.7E-08 40.6 3.4 34 34-67 6-39 (103)
404 PF00899 ThiF: ThiF family; I 96.6 0.0046 1E-07 41.5 4.6 34 35-68 2-36 (135)
405 TIGR02354 thiF_fam2 thiamine b 96.6 0.0047 1E-07 44.5 4.8 34 34-67 20-54 (200)
406 PRK06719 precorrin-2 dehydroge 96.5 0.0058 1.3E-07 42.2 4.9 33 34-66 12-44 (157)
407 PRK09260 3-hydroxybutyryl-CoA 96.5 0.0041 8.9E-08 47.5 4.5 32 37-68 3-34 (288)
408 KOG1346 Programmed cell death 96.5 0.012 2.7E-07 46.6 6.8 53 136-196 394-446 (659)
409 PRK14106 murD UDP-N-acetylmura 96.5 0.0054 1.2E-07 49.9 5.2 34 35-68 5-38 (450)
410 PF01488 Shikimate_DH: Shikima 96.5 0.0069 1.5E-07 40.7 4.9 34 34-67 11-45 (135)
411 PRK07066 3-hydroxybutyryl-CoA 96.5 0.005 1.1E-07 47.6 4.7 33 36-68 8-40 (321)
412 TIGR01470 cysG_Nterm siroheme 96.5 0.0064 1.4E-07 44.0 4.9 33 35-67 9-41 (205)
413 PLN02852 ferredoxin-NADP+ redu 96.5 0.073 1.6E-06 43.8 11.4 23 35-57 166-188 (491)
414 PRK06718 precorrin-2 dehydroge 96.4 0.0073 1.6E-07 43.6 5.0 34 34-67 9-42 (202)
415 PRK06035 3-hydroxyacyl-CoA deh 96.4 0.0057 1.2E-07 46.8 4.7 34 36-69 4-37 (291)
416 PRK06522 2-dehydropantoate 2-r 96.4 0.0059 1.3E-07 46.8 4.7 32 37-68 2-33 (304)
417 PRK08229 2-dehydropantoate 2-r 96.4 0.0059 1.3E-07 47.8 4.7 32 37-68 4-35 (341)
418 PF01262 AlaDh_PNT_C: Alanine 96.4 0.0081 1.8E-07 42.0 4.9 34 34-67 19-52 (168)
419 PRK12921 2-dehydropantoate 2-r 96.4 0.0055 1.2E-07 47.1 4.4 30 37-66 2-31 (305)
420 PRK15116 sulfur acceptor prote 96.3 0.0084 1.8E-07 45.1 5.0 36 34-69 29-65 (268)
421 KOG2304 3-hydroxyacyl-CoA dehy 96.3 0.0069 1.5E-07 43.8 4.0 37 32-68 8-44 (298)
422 TIGR00518 alaDH alanine dehydr 96.2 0.01 2.3E-07 46.9 5.3 34 34-67 166-199 (370)
423 TIGR02734 crtI_fam phytoene de 96.2 0.024 5.2E-07 46.8 7.7 37 38-74 1-37 (502)
424 PRK05808 3-hydroxybutyryl-CoA 96.2 0.0077 1.7E-07 45.8 4.4 33 36-68 4-36 (282)
425 PRK12475 thiamine/molybdopteri 96.2 0.0091 2E-07 46.6 4.9 35 34-68 23-58 (338)
426 PRK14620 NAD(P)H-dependent gly 96.2 0.009 2E-07 46.5 4.7 32 37-68 2-33 (326)
427 PLN02602 lactate dehydrogenase 96.2 0.012 2.6E-07 46.1 5.2 53 12-68 17-72 (350)
428 COG1004 Ugd Predicted UDP-gluc 96.2 0.0089 1.9E-07 46.9 4.4 32 37-68 2-33 (414)
429 PLN02545 3-hydroxybutyryl-CoA 96.2 0.011 2.5E-07 45.2 5.1 33 36-68 5-37 (295)
430 PRK07688 thiamine/molybdopteri 96.1 0.012 2.7E-07 45.9 5.0 34 34-67 23-57 (339)
431 PRK11064 wecC UDP-N-acetyl-D-m 96.1 0.011 2.4E-07 47.5 4.8 34 36-69 4-37 (415)
432 cd05292 LDH_2 A subgroup of L- 96.1 0.012 2.6E-07 45.5 4.8 32 37-68 2-35 (308)
433 TIGR02356 adenyl_thiF thiazole 96.1 0.014 3E-07 42.2 4.9 35 34-68 20-55 (202)
434 PRK14618 NAD(P)H-dependent gly 96.1 0.013 2.9E-07 45.5 5.1 32 37-68 6-37 (328)
435 PF02254 TrkA_N: TrkA-N domain 96.0 0.017 3.7E-07 37.5 4.9 31 38-68 1-31 (116)
436 COG5044 MRS6 RAB proteins gera 96.0 0.015 3.3E-07 45.2 5.1 40 34-73 5-44 (434)
437 PRK06130 3-hydroxybutyryl-CoA 96.0 0.014 3.1E-07 45.0 5.1 33 36-68 5-37 (311)
438 KOG0404 Thioredoxin reductase 96.0 0.076 1.6E-06 38.7 8.2 34 35-68 157-190 (322)
439 PRK08644 thiamine biosynthesis 96.0 0.016 3.4E-07 42.2 4.9 35 34-68 27-62 (212)
440 cd01080 NAD_bind_m-THF_DH_Cycl 96.0 0.017 3.7E-07 40.3 4.8 35 33-67 42-77 (168)
441 TIGR02355 moeB molybdopterin s 96.0 0.016 3.4E-07 43.0 4.9 36 34-69 23-59 (240)
442 COG1748 LYS9 Saccharopine dehy 95.9 0.014 3E-07 46.2 4.7 32 36-67 2-34 (389)
443 PF00056 Ldh_1_N: lactate/mala 95.9 0.02 4.3E-07 38.8 4.9 32 37-68 2-36 (141)
444 TIGR01763 MalateDH_bact malate 95.9 0.014 3.1E-07 44.9 4.7 32 37-68 3-35 (305)
445 COG0686 Ald Alanine dehydrogen 95.9 0.0099 2.2E-07 45.2 3.6 34 34-67 167-200 (371)
446 PRK05690 molybdopterin biosynt 95.9 0.017 3.6E-07 43.1 4.8 35 34-68 31-66 (245)
447 PRK00066 ldh L-lactate dehydro 95.9 0.021 4.5E-07 44.2 5.5 34 35-68 6-41 (315)
448 PRK08328 hypothetical protein; 95.9 0.017 3.7E-07 42.6 4.8 35 34-68 26-61 (231)
449 cd01487 E1_ThiF_like E1_ThiF_l 95.9 0.016 3.6E-07 40.7 4.5 32 37-68 1-33 (174)
450 TIGR03026 NDP-sugDHase nucleot 95.9 0.012 2.6E-07 47.3 4.4 33 37-69 2-34 (411)
451 TIGR02733 desat_CrtD C-3',4' d 95.9 0.058 1.3E-06 44.5 8.4 38 36-73 2-39 (492)
452 cd01483 E1_enzyme_family Super 95.9 0.019 4.2E-07 38.9 4.7 32 37-68 1-33 (143)
453 PTZ00082 L-lactate dehydrogena 95.9 0.022 4.8E-07 44.2 5.5 34 36-69 7-41 (321)
454 PRK04148 hypothetical protein; 95.8 0.014 3E-07 39.0 3.7 33 36-69 18-50 (134)
455 PRK09424 pntA NAD(P) transhydr 95.8 0.016 3.4E-07 47.7 4.7 35 34-68 164-198 (509)
456 PRK00094 gpsA NAD(P)H-dependen 95.8 0.018 3.8E-07 44.7 4.8 32 37-68 3-34 (325)
457 cd00757 ThiF_MoeB_HesA_family 95.8 0.02 4.4E-07 42.1 4.8 35 34-68 20-55 (228)
458 PRK14619 NAD(P)H-dependent gly 95.8 0.02 4.2E-07 44.2 4.9 33 36-68 5-37 (308)
459 PF03446 NAD_binding_2: NAD bi 95.7 0.024 5.2E-07 39.4 4.8 33 36-68 2-34 (163)
460 PRK12549 shikimate 5-dehydroge 95.7 0.021 4.6E-07 43.5 4.9 34 35-68 127-161 (284)
461 cd00401 AdoHcyase S-adenosyl-L 95.7 0.02 4.3E-07 45.8 4.7 34 35-68 202-235 (413)
462 TIGR02279 PaaC-3OHAcCoADH 3-hy 95.7 0.02 4.3E-07 47.3 4.7 34 36-69 6-39 (503)
463 KOG1439 RAB proteins geranylge 95.7 0.0068 1.5E-07 47.5 1.9 39 35-73 4-42 (440)
464 cd05311 NAD_bind_2_malic_enz N 95.6 0.023 5.1E-07 41.8 4.5 34 35-68 25-61 (226)
465 TIGR03736 PRTRC_ThiF PRTRC sys 95.6 0.026 5.6E-07 41.9 4.7 36 33-68 9-55 (244)
466 PRK05866 short chain dehydroge 95.5 0.041 8.8E-07 42.1 5.9 34 35-68 40-74 (293)
467 PF13478 XdhC_C: XdhC Rossmann 95.5 0.025 5.5E-07 38.0 4.1 31 38-68 1-31 (136)
468 cd00755 YgdL_like Family of ac 95.5 0.029 6.3E-07 41.4 4.8 35 34-68 10-45 (231)
469 cd01075 NAD_bind_Leu_Phe_Val_D 95.5 0.036 7.9E-07 39.9 5.1 34 35-68 28-61 (200)
470 PRK07417 arogenate dehydrogena 95.5 0.024 5.2E-07 43.1 4.4 32 37-68 2-33 (279)
471 cd05293 LDH_1 A subgroup of L- 95.5 0.034 7.3E-07 43.0 5.1 34 35-68 3-38 (312)
472 TIGR02731 phytoene_desat phyto 95.5 0.1 2.2E-06 42.6 8.2 62 135-198 213-275 (453)
473 PRK08268 3-hydroxy-acyl-CoA de 95.5 0.031 6.8E-07 46.2 5.2 34 36-69 8-41 (507)
474 cd01485 E1-1_like Ubiquitin ac 95.4 0.033 7.1E-07 40.1 4.8 35 34-68 18-53 (198)
475 cd05291 HicDH_like L-2-hydroxy 95.4 0.03 6.4E-07 43.2 4.8 33 37-69 2-36 (306)
476 PRK06223 malate dehydrogenase; 95.4 0.031 6.8E-07 43.1 5.0 33 36-68 3-36 (307)
477 cd01492 Aos1_SUMO Ubiquitin ac 95.4 0.034 7.3E-07 40.0 4.7 35 34-68 20-55 (197)
478 PF10727 Rossmann-like: Rossma 95.4 0.017 3.7E-07 38.3 2.8 34 33-66 8-41 (127)
479 cd01339 LDH-like_MDH L-lactate 95.4 0.026 5.6E-07 43.4 4.2 31 38-68 1-32 (300)
480 PRK08306 dipicolinate synthase 95.4 0.037 8E-07 42.5 5.0 35 34-68 151-185 (296)
481 PRK11730 fadB multifunctional 95.3 0.025 5.5E-07 48.7 4.5 33 36-68 314-346 (715)
482 PLN02353 probable UDP-glucose 95.3 0.031 6.7E-07 45.7 4.8 33 37-69 3-37 (473)
483 COG1893 ApbA Ketopantoate redu 95.3 0.028 6.2E-07 43.3 4.4 32 37-68 2-33 (307)
484 PRK08223 hypothetical protein; 95.3 0.036 7.7E-07 42.1 4.7 35 34-68 26-61 (287)
485 PRK07531 bifunctional 3-hydrox 95.3 0.034 7.4E-07 45.9 5.0 32 37-68 6-37 (495)
486 TIGR02437 FadB fatty oxidation 95.3 0.028 6E-07 48.5 4.5 33 36-68 314-346 (714)
487 PF01593 Amino_oxidase: Flavin 95.3 0.058 1.2E-06 43.1 6.1 31 45-75 1-31 (450)
488 cd01484 E1-2_like Ubiquitin ac 95.2 0.04 8.7E-07 40.7 4.7 32 37-68 1-33 (234)
489 PRK02472 murD UDP-N-acetylmura 95.2 0.036 7.7E-07 45.1 4.9 33 36-68 6-38 (447)
490 PRK15057 UDP-glucose 6-dehydro 95.1 0.032 7E-07 44.5 4.3 32 37-69 2-33 (388)
491 TIGR01915 npdG NADPH-dependent 95.1 0.046 1E-06 40.0 4.7 32 37-68 2-34 (219)
492 PRK07208 hypothetical protein; 95.1 0.19 4.1E-06 41.3 8.7 62 135-198 218-279 (479)
493 PRK07502 cyclohexadienyl dehyd 95.1 0.046 9.9E-07 42.2 4.9 33 36-68 7-41 (307)
494 PRK05597 molybdopterin biosynt 95.1 0.045 9.8E-07 43.1 4.8 34 34-67 27-61 (355)
495 TIGR02853 spore_dpaA dipicolin 95.1 0.048 1E-06 41.6 4.8 35 34-68 150-184 (287)
496 cd05191 NAD_bind_amino_acid_DH 95.0 0.072 1.6E-06 32.7 4.8 32 35-66 23-55 (86)
497 PRK05562 precorrin-2 dehydroge 95.0 0.054 1.2E-06 39.6 4.8 34 34-67 24-57 (223)
498 PRK07233 hypothetical protein; 95.0 0.15 3.3E-06 41.1 7.9 56 135-198 198-253 (434)
499 PTZ00117 malate dehydrogenase; 95.0 0.057 1.2E-06 41.9 5.2 34 35-68 5-39 (319)
500 PRK04308 murD UDP-N-acetylmura 95.0 0.059 1.3E-06 43.9 5.5 34 36-69 6-39 (445)
No 1
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.94 E-value=8.9e-25 Score=174.59 Aligned_cols=172 Identities=64% Similarity=1.094 Sum_probs=139.4
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
...+|+|||||++|+++|..|++.|.+|+++||++.+||.|.+.........+..+.........|..+..+.+...+.+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 45799999999999999999999999999999999999999987665444455555444455678888888889888888
Q ss_pred ccccccccCC-CCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEE
Q 038157 114 TDYPFTARDD-GSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVV 192 (207)
Q Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV 192 (207)
.++++..... .......|+.+.++.++|+++++..++...++++++|+++...+ +.|.|++.++.+. ..+..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w~V~~~~~~~~-~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKWRVQSKNSGGF-SKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeEEEEEEcCCCc-eEEEEcCEEE
Confidence 8888754311 12245678999999999999999999876689999999999876 7899998764321 2356799999
Q ss_pred EccCCCCCCCCCCCC
Q 038157 193 VCNGHYTEPRIAEIP 207 (207)
Q Consensus 193 ~AtG~~s~~~~p~~~ 207 (207)
+|+|.++.|.+|.+|
T Consensus 167 vAtG~~~~P~~P~ip 181 (461)
T PLN02172 167 VCNGHYTEPNVAHIP 181 (461)
T ss_pred EeccCCCCCcCCCCC
Confidence 999999999999875
No 2
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=2.1e-22 Score=158.77 Aligned_cols=157 Identities=57% Similarity=1.027 Sum_probs=135.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
...+|+|||||+|||++|.+|.+.|++++++||.+.+||.|.+..... .....+++.++.+.+.+.+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~-----------~~~ss~Y~~l~tn~pKe~~~~ 73 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE-----------VVHSSVYKSLRTNLPKEMMGY 73 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc-----------ccccchhhhhhccCChhhhcC
Confidence 357999999999999999999999999999999999999999875532 334567889999999999999
Q ss_pred ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
.++++... ....|++..++.++|.++++..++...+.++++|..+....++.|.|.+.+..+. .....+|.||+
T Consensus 74 ~dfpf~~~-----~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-~~~~ifd~VvV 147 (448)
T KOG1399|consen 74 SDFPFPER-----DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-IEEEIFDAVVV 147 (448)
T ss_pred CCCCCccc-----CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-eeEEEeeEEEE
Confidence 88888766 5677899999999999999999986669999999999887646899999887654 45778999999
Q ss_pred ccCCCCCCCCCCCC
Q 038157 194 CNGHYTEPRIAEIP 207 (207)
Q Consensus 194 AtG~~s~~~~p~~~ 207 (207)
|+|.+..|++|.+|
T Consensus 148 ctGh~~~P~~P~~~ 161 (448)
T KOG1399|consen 148 CTGHYVEPRIPQIP 161 (448)
T ss_pred cccCcCCCCCCcCC
Confidence 99999779999774
No 3
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.86 E-value=5.9e-21 Score=154.68 Aligned_cols=151 Identities=45% Similarity=0.784 Sum_probs=115.3
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecccc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTD 115 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (207)
.+|+|||||++|+++|..|.+.|.+++++||++.+||.|.+..... .-....|+.+..+.+...+.+.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~-----------~g~~~~y~sl~~n~sk~~~~fsd 70 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPE-----------DGRSSVYDSLHTNTSKEMMAFSD 70 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCC-----------CSEGGGSTT-B-SS-GGGSCCTT
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCC-----------CCccccccceEEeeCchHhcCCC
Confidence 5799999999999999999999999999999999999998764321 01235777888888888888888
Q ss_pred ccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecC----CcEEEEEEecCCCceeEEEeCEE
Q 038157 116 YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN----NKWKVKSKLRNGDGDCDEIYDAV 191 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~----~~~~v~~~~~~~~~~~~i~a~~V 191 (207)
+++... ...|+...++.++|++++++.++...++++++|+++.+.++ +.|.|++.+. ++.++-.+|.|
T Consensus 71 fp~p~~------~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~--g~~~~~~fD~V 142 (531)
T PF00743_consen 71 FPFPED------YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND--GKEETEEFDAV 142 (531)
T ss_dssp S-HCCC------CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT--TEEEEEEECEE
T ss_pred cCCCCC------CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC--CeEEEEEeCeE
Confidence 887644 34688999999999999999988766999999999998653 4699987542 22345678999
Q ss_pred EEccCCCCCCCCCC
Q 038157 192 VVCNGHYTEPRIAE 205 (207)
Q Consensus 192 V~AtG~~s~~~~p~ 205 (207)
|+|+|.++.|.+|.
T Consensus 143 vvatG~~~~P~~P~ 156 (531)
T PF00743_consen 143 VVATGHFSKPNIPE 156 (531)
T ss_dssp EEEE-SSSCESB--
T ss_pred EEcCCCcCCCCCCh
Confidence 99999999999995
No 4
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.83 E-value=2.3e-20 Score=134.86 Aligned_cols=145 Identities=37% Similarity=0.584 Sum_probs=89.0
Q ss_pred EEECCChhHHHHHHHHHHCCCe-EEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecccccc
Q 038157 39 AVIGAGAAGLVAARELRREGHK-VVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDYP 117 (207)
Q Consensus 39 ~IIG~G~aG~~~A~~l~~~g~~-v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (207)
+|||||++|+++|..|.++|.+ ++||||++.+|+.|......... ..+.... ....+. ..........+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~---~~~~~~~----~~~~~~---~~~~~~~~~~~ 70 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRL---HSPSFFS----SDFGLP---DFESFSFDDSP 70 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT----BSSSCCT----GGSS-----CCCHSCHHHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCcc---ccCcccc----ccccCC---cccccccccCC
Confidence 7999999999999999999998 99999999999999742221100 0000000 000000 00000000000
Q ss_pred ccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCC
Q 038157 118 FTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGH 197 (207)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~ 197 (207)
.. .....++....+.++|++.+++.+++ ++++++|+++..++ +.|.|++.++ +++.|+.||+|+|.
T Consensus 71 ~~------~~~~~~~~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~-~~w~v~~~~~-----~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 71 EW------RWPHDFPSGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDG-DGWTVTTRDG-----RTIRADRVVLATGH 136 (203)
T ss_dssp HH------HHSBSSEBHHHHHHHHHHHHHHTTGG--EETS--EEEEEEET-TTEEEEETTS------EEEEEEEEE---S
T ss_pred CC------CCCcccCCHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEec-cEEEEEEEec-----ceeeeeeEEEeeec
Confidence 00 01234567789999999999999998 99999999999998 6699999875 36889999999999
Q ss_pred CCCCCCCCCC
Q 038157 198 YTEPRIAEIP 207 (207)
Q Consensus 198 ~s~~~~p~~~ 207 (207)
++.|..|.+|
T Consensus 137 ~~~p~~p~~~ 146 (203)
T PF13738_consen 137 YSHPRIPDIP 146 (203)
T ss_dssp SCSB---S-T
T ss_pred cCCCCccccc
Confidence 9999999875
No 5
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.2e-19 Score=143.17 Aligned_cols=146 Identities=33% Similarity=0.619 Sum_probs=113.9
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCe-EEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcce
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHK-VVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREV 110 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~-v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
.+..+||+|||||++|+++|++|.+.|.. ++|+||.+.+||.|..+ .|..+..+.+...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~--------------------ry~~l~~~~p~~~ 64 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN--------------------RYPGLRLDSPKWL 64 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc--------------------cCCceEECCchhe
Confidence 34578999999999999999999999998 99999999999999753 3334444444444
Q ss_pred eccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecC-CcEEEEEEecCCCceeEEEeC
Q 038157 111 MGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN-NKWKVKSKLRNGDGDCDEIYD 189 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~-~~~~v~~~~~~~~~~~~i~a~ 189 (207)
..+..+++. +...++....+..++.+.+++++....+.+++.|..+..+++ +.|.|++.++... + +.||
T Consensus 65 ~~~~~~p~~-------~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~--~-~~a~ 134 (443)
T COG2072 65 LGFPFLPFR-------WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTG--E-LTAD 134 (443)
T ss_pred eccCCCccC-------CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCee--e-EecC
Confidence 444444443 244556666688888888888887766888888888877654 6899999987644 2 7899
Q ss_pred EEEEccCCCCCCCCCCCC
Q 038157 190 AVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 190 ~VV~AtG~~s~~~~p~~~ 207 (207)
.||+|||.++.|++|.|+
T Consensus 135 ~vV~ATG~~~~P~iP~~~ 152 (443)
T COG2072 135 FVVVATGHLSEPYIPDFA 152 (443)
T ss_pred EEEEeecCCCCCCCCCCC
Confidence 999999999999999885
No 6
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.83 E-value=9.7e-20 Score=138.51 Aligned_cols=158 Identities=18% Similarity=0.351 Sum_probs=118.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcce---ec---ccccccccccCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAV---IH---TSLYSSLRTNLP 107 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~ 107 (207)
+.+||+|||||+||+++|..++++|.+|+|||+.+.+|.-+..+++..++..+...-... .. ..++..+..+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 468999999999999999999999999999999999998888888888777654431110 01 223333334444
Q ss_pred cceecccc---ccccccCCCCCCCCCCCC---hhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCC
Q 038157 108 REVMGFTD---YPFTARDDGSGDPRRFPG---HAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGD 181 (207)
Q Consensus 108 ~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~ 181 (207)
++...+.+ ..+.. ...++.|+. ...+.+.|...+++.+++ ++.+++|.++..++ ..+.+.+.++.
T Consensus 82 ~d~i~~~e~~Gi~~~e----~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~--i~~~~~v~~v~~~~-~~f~l~t~~g~-- 152 (408)
T COG2081 82 EDFIDWVEGLGIALKE----EDLGRMFPDSDKASPIVDALLKELEALGVT--IRTRSRVSSVEKDD-SGFRLDTSSGE-- 152 (408)
T ss_pred HHHHHHHHhcCCeeEE----ccCceecCCccchHHHHHHHHHHHHHcCcE--EEecceEEeEEecC-ceEEEEcCCCC--
Confidence 44333321 22221 234555654 468889999999999999 99999999999987 77888887743
Q ss_pred ceeEEEeCEEEEccCCCCCCCC
Q 038157 182 GDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 182 ~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
++.||.+|+|+|+.|-|.+
T Consensus 153 ---~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 153 ---TVKCDSLILATGGKSWPKL 171 (408)
T ss_pred ---EEEccEEEEecCCcCCCCC
Confidence 6999999999999998864
No 7
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.79 E-value=5.2e-19 Score=139.04 Aligned_cols=159 Identities=26% Similarity=0.420 Sum_probs=89.5
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec-------ccccccccccCCc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH-------TSLYSSLRTNLPR 108 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 108 (207)
|||+|||||+||++||+.|+++|.+|+|+||+..+|.....+++.+++..+.......+. ......+..+...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 799999999999999999999999999999998887555555555544433111111111 1111222222222
Q ss_pred ceecccc-ccccccCCCCCCCCCCC---ChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCcee
Q 038157 109 EVMGFTD-YPFTARDDGSGDPRRFP---GHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDC 184 (207)
Q Consensus 109 ~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~ 184 (207)
+...+.. .+.... .....+.|| ...++.+.|.+.+++.+++ ++++++|.+++.++++.+.|.+.+ ..
T Consensus 81 d~~~ff~~~Gv~~~--~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~~f~v~~~~-----~~ 151 (409)
T PF03486_consen 81 DLIAFFEELGVPTK--IEEDGRVFPKSDKASSVVDALLEELKRLGVE--IHFNTRVKSIEKKEDGVFGVKTKN-----GG 151 (409)
T ss_dssp HHHHHHHHTT--EE--E-STTEEEETT--HHHHHHHHHHHHHHHT-E--EE-S--EEEEEEETTEEEEEEETT-----TE
T ss_pred HHHHHHHhcCCeEE--EcCCCEECCCCCcHHHHHHHHHHHHHHcCCE--EEeCCEeeeeeecCCceeEeeccC-----cc
Confidence 2222211 111110 012233443 3468888999999999999 999999999999875568888832 25
Q ss_pred EEEeCEEEEccCCCCCCCC
Q 038157 185 DEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 185 ~i~a~~VV~AtG~~s~~~~ 203 (207)
.+.||.||+|+|+.|.|..
T Consensus 152 ~~~a~~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 152 EYEADAVILATGGKSYPKT 170 (409)
T ss_dssp EEEESEEEE----SSSGGG
T ss_pred cccCCEEEEecCCCCcccc
Confidence 7999999999999887754
No 8
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.71 E-value=1.6e-17 Score=129.52 Aligned_cols=152 Identities=27% Similarity=0.344 Sum_probs=90.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCc---eeeeCCCCC--CCcCCCCCCcceecccccccccccC-Cc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGG---TWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL-PR 108 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 108 (207)
++||+|||||++|+++|+.|+++|++|+||||.+.+.. .....+... ...++ ++..+.... ..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lg-----------l~~~~~~~~~~~ 69 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLG-----------LLDEILARGSPH 69 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTT-----------EHHHHHHHSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhccccccccccccccccccccccccc-----------chhhhhhhcccc
Confidence 37999999999999999999999999999999765421 111111100 00011 111111100 00
Q ss_pred ce---ecccc---------cc-cccc--CCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEE
Q 038157 109 EV---MGFTD---------YP-FTAR--DDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKV 173 (207)
Q Consensus 109 ~~---~~~~~---------~~-~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v 173 (207)
.. ..... .+ .... ............+..+.+.|.+.+++.+++ ++++++++++..+. +.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~~~~d~-~~~~~ 146 (356)
T PF01494_consen 70 EVMRIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVD--IRFGTRVVSIEQDD-DGVTV 146 (356)
T ss_dssp CEEEEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEE--EEESEEEEEEEEET-TEEEE
T ss_pred cceeeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhh--heeeeecccccccc-ccccc
Confidence 00 00000 00 0000 000111122245678999999999999988 99999999999887 66777
Q ss_pred EEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 174 KSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 174 ~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
.+.++..++.+++.||.||.|+|.+|.
T Consensus 147 ~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 147 VVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp EEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred ccccccCCceeEEEEeeeecccCcccc
Confidence 777766555668999999999999885
No 9
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.71 E-value=2.8e-16 Score=116.91 Aligned_cols=145 Identities=23% Similarity=0.201 Sum_probs=92.2
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
..++||+|||||++|+++|+.|++.|++|+|+||...+|+..... ...... ..........+..
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~g-g~~~~~-------~~v~~~~~~~l~~-------- 86 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGG-GMLFNK-------IVVQEEADEILDE-------- 86 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccC-cccccc-------ccchHHHHHHHHH--------
Confidence 456899999999999999999999999999999988776643211 100000 0000000000100
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecC-CcEEEEEEec------CCCceeE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN-NKWKVKSKLR------NGDGDCD 185 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~-~~~~v~~~~~------~~~~~~~ 185 (207)
.+.++... ........+..+...|.+.+.+.|++ ++++++|+++..+++ ..+++.+... ...+...
T Consensus 87 -~gv~~~~~----~~g~~~vd~~~l~~~L~~~A~~~Gv~--I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~ 159 (257)
T PRK04176 87 -FGIRYKEV----EDGLYVADSVEAAAKLAAAAIDAGAK--IFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLT 159 (257)
T ss_pred -CCCCceee----cCcceeccHHHHHHHHHHHHHHcCCE--EEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEE
Confidence 01111111 01112345578888899999999998 999999999987664 3455554321 1112357
Q ss_pred EEeCEEEEccCCCCC
Q 038157 186 EIYDAVVVCNGHYTE 200 (207)
Q Consensus 186 i~a~~VV~AtG~~s~ 200 (207)
+.|+.||+|||+++.
T Consensus 160 i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 160 IEAKAVVDATGHDAE 174 (257)
T ss_pred EEcCEEEEEeCCCcH
Confidence 999999999998875
No 10
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.70 E-value=1.3e-16 Score=127.28 Aligned_cols=153 Identities=20% Similarity=0.287 Sum_probs=89.3
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC-----CceeeeCCCCC--CCcCCCCCCcceeccccccccccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI-----GGTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTN 105 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~-----gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 105 (207)
+.++||+|||||++|+++|+.|++.|++|+|+||.+.+ |......+... ...+|+.+. +...
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~-----------l~~~ 84 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEK-----------ILPQ 84 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhh-----------hHhh
Confidence 34689999999999999999999999999999998654 22222222111 111222111 1100
Q ss_pred C-Ccceecccc------ccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEe
Q 038157 106 L-PREVMGFTD------YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKL 177 (207)
Q Consensus 106 ~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~ 177 (207)
. ......+.+ ..+..................+.+.|.+.+.+. +++ ++++++|++++.++ +.+.|++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~-~~~~v~~~~ 161 (415)
T PRK07364 85 IGKFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQ-DAATVTLEI 161 (415)
T ss_pred cCCccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeeEEEEcc
Confidence 0 000000000 001000000000011223356777777777664 577 88999999998776 667787765
Q ss_pred cCCCceeEEEeCEEEEccCCCCCC
Q 038157 178 RNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 178 ~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
+++ ..+++||+||+|||.+|.-
T Consensus 162 ~~~--~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 162 EGK--QQTLQSKLVVAADGARSPI 183 (415)
T ss_pred CCc--ceEEeeeEEEEeCCCCchh
Confidence 321 2469999999999998864
No 11
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.70 E-value=3e-16 Score=128.83 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=92.7
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCc---eeeeCCCCC--CCcCCCCCCcceecccccccccccCC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGG---TWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLP 107 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
...+||+|||||++|+++|+.|++.|++|+|+||...+.. .+....... ...+++.+....... ....+.....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~~~ 86 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTT-PNHGMRFLDA 86 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcc-cCCceEEEcC
Confidence 4468999999999999999999999999999999865421 112111110 011111111000000 0000000000
Q ss_pred cceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEE
Q 038157 108 REVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDE 186 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i 186 (207)
.......+.................+..+.+.|.+.+.+. +++ ++++++|++++.++ +.+.|++.+.++ +.+++
T Consensus 87 -~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~-~~v~v~~~~~~G-~~~~i 161 (538)
T PRK06183 87 -KGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDD-DGVTVTLTDADG-QRETV 161 (538)
T ss_pred -CCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcC-CeEEEEEEcCCC-CEEEE
Confidence 0000000110000000011112234567778888888765 777 99999999999887 667888765322 13679
Q ss_pred EeCEEEEccCCCCCC
Q 038157 187 IYDAVVVCNGHYTEP 201 (207)
Q Consensus 187 ~a~~VV~AtG~~s~~ 201 (207)
+||+||.|||.+|.-
T Consensus 162 ~ad~vVgADG~~S~v 176 (538)
T PRK06183 162 RARYVVGCDGANSFV 176 (538)
T ss_pred EEEEEEecCCCchhH
Confidence 999999999999864
No 12
>PRK08013 oxidoreductase; Provisional
Probab=99.70 E-value=1.8e-16 Score=125.74 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=89.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCccee--ccccccccccc--CCcce
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVI--HTSLYSSLRTN--LPREV 110 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~ 110 (207)
++||+|||||++|+++|+.|++.|++|+|+||.+.+........... ...+.+....+ .-.+++.+... .+...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r--~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALR--VSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCce--eeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 48999999999999999999999999999999865321100000000 00000100000 00111111110 00000
Q ss_pred ecc------ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCce
Q 038157 111 MGF------TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGD 183 (207)
Q Consensus 111 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~ 183 (207)
..+ ....+...............+..+.+.|.+.+.+. +++ ++++++|++++.++ +.+.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g----- 152 (400)
T PRK08013 81 MEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDIT--LLAPAELQQVAWGE-NEAFLTLKDG----- 152 (400)
T ss_pred EEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeEEEEEcCC-----
Confidence 000 00011100000000012355678888998888775 677 99999999998876 6677777653
Q ss_pred eEEEeCEEEEccCCCCCC
Q 038157 184 CDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 184 ~~i~a~~VV~AtG~~s~~ 201 (207)
++++||+||.|||.+|.-
T Consensus 153 ~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 153 SMLTARLVVGADGANSWL 170 (400)
T ss_pred CEEEeeEEEEeCCCCcHH
Confidence 369999999999999864
No 13
>PRK06847 hypothetical protein; Provisional
Probab=99.70 E-value=2.4e-16 Score=124.08 Aligned_cols=157 Identities=21% Similarity=0.198 Sum_probs=90.8
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC---CceeeeCCCCC--CCcCCCCCCcceecccccccccccCCcc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI---GGTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLPRE 109 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~---gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
..||+|||||++|+++|+.|++.|++|+|+|+.+.+ |......+... ...+++.+..... ......+..... .
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~-~~~~~~~~~~~~-~ 81 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEA-GFGFDGVDLFDP-D 81 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHh-CCCccceEEECC-C
Confidence 579999999999999999999999999999997653 22222211111 0001110000000 000000000000 0
Q ss_pred eeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeC
Q 038157 110 VMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYD 189 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~ 189 (207)
.......+................+..+.+.|.+.+.+.+++ ++++++|+++..++ +.+.|.+.++. ++.+|
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~g~-----~~~ad 153 (375)
T PRK06847 82 GTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGAD--VRLGTTVTAIEQDD-DGVTVTFSDGT-----TGRYD 153 (375)
T ss_pred CCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcC-CEEEEEEcCCC-----EEEcC
Confidence 000000000000000001123355678889999999888888 99999999998776 56777776533 68999
Q ss_pred EEEEccCCCCCC
Q 038157 190 AVVVCNGHYTEP 201 (207)
Q Consensus 190 ~VV~AtG~~s~~ 201 (207)
.||+|+|.+|..
T Consensus 154 ~vI~AdG~~s~~ 165 (375)
T PRK06847 154 LVVGADGLYSKV 165 (375)
T ss_pred EEEECcCCCcch
Confidence 999999999864
No 14
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.70 E-value=3.5e-16 Score=124.93 Aligned_cols=157 Identities=21% Similarity=0.182 Sum_probs=87.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcC-CCCCCc---ceecccccccccccCCcc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQL-GVDPNR---AVIHTSLYSSLRTNLPRE 109 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~ 109 (207)
.++||+|||||++|+++|+.|++.|++|+|+||...++.............+ .+.+.. ..+...............
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 4699999999999999999999999999999998766532110000000000 000000 000000000000000000
Q ss_pred eeccccccccccCCCC-CCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEe
Q 038157 110 VMGFTDYPFTARDDGS-GDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIY 188 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a 188 (207)
. .....+....... ........+..+.++|.+.+++.|++ ++.+++|+++..++ +.+.+...++ .++.|
T Consensus 84 ~--~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-g~v~~v~~~g-----~~i~A 153 (428)
T PRK10157 84 S--AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQ--LITGIRVDNLVQRD-GKVVGVEADG-----DVIEA 153 (428)
T ss_pred C--ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEeC-CEEEEEEcCC-----cEEEC
Confidence 0 0000111000000 11122346778899999999999998 99999999998776 4433222221 36899
Q ss_pred CEEEEccCCCCC
Q 038157 189 DAVVVCNGHYTE 200 (207)
Q Consensus 189 ~~VV~AtG~~s~ 200 (207)
+.||+|+|.+|.
T Consensus 154 ~~VI~A~G~~s~ 165 (428)
T PRK10157 154 KTVILADGVNSI 165 (428)
T ss_pred CEEEEEeCCCHH
Confidence 999999998764
No 15
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.70 E-value=4.3e-16 Score=123.35 Aligned_cols=151 Identities=20% Similarity=0.219 Sum_probs=93.4
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcC-CCCCCcceecccccccccccCCcceec
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQL-GVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
+++||+||||||||++||+.|++.|.+|+|+||...+|.............+ .+.+.... . +..........
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~---~----i~~~v~~~~~~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDE---E----IERKVTGARIY 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcch---h----hheeeeeeEEE
Confidence 4699999999999999999999999999999998887653332111110000 00000000 0 00000000000
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVV 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV 192 (207)
......... ..........+..+.++|.+.+++.|.+ ++.+++++.+..++ +.+.+.+..++ .++.||.||
T Consensus 75 ~~~~~~~~~--~~~~~~y~v~R~~fd~~La~~A~~aGae--~~~~~~~~~~~~~~-~~~~~~~~~~~----~e~~a~~vI 145 (396)
T COG0644 75 FPGEKVAIE--VPVGEGYIVDRAKFDKWLAERAEEAGAE--LYPGTRVTGVIRED-DGVVVGVRAGD----DEVRAKVVI 145 (396)
T ss_pred ecCCceEEe--cCCCceEEEEhHHhhHHHHHHHHHcCCE--EEeceEEEEEEEeC-CcEEEEEEcCC----EEEEcCEEE
Confidence 000000000 0001233456779999999999999999 99999999999988 44444444433 579999999
Q ss_pred EccCCCCC
Q 038157 193 VCNGHYTE 200 (207)
Q Consensus 193 ~AtG~~s~ 200 (207)
+|+|..+.
T Consensus 146 ~AdG~~s~ 153 (396)
T COG0644 146 DADGVNSA 153 (396)
T ss_pred ECCCcchH
Confidence 99997654
No 16
>PRK10015 oxidoreductase; Provisional
Probab=99.70 E-value=4.3e-16 Score=124.37 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=88.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCC-CCCcC-CCCCCcceecccccccccccCCccee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRV-ESDQL-GVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
.++||+|||||++|+++|+.|++.|.+|+||||...+|.... .+.. ....+ .+.+.. .. ...+.........
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~-~gg~i~~~~~~~l~~~~---~~--~~~i~~~~~~~~~ 77 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNM-TGGRLYAHTLEAIIPGF---AA--SAPVERKVTREKI 77 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccc-cCceeecccHHHHcccc---cc--cCCccccccceeE
Confidence 469999999999999999999999999999999876643211 0110 00000 000000 00 0000000000000
Q ss_pred ccc------cccccccCCCC-CCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEE-EEEEecCCCce
Q 038157 112 GFT------DYPFTARDDGS-GDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWK-VKSKLRNGDGD 183 (207)
Q Consensus 112 ~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~-v~~~~~~~~~~ 183 (207)
.+. ...+....... ........+..+.++|.+.+++.|++ ++.+++|+++..++ +.+. +.. + +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~~v~~-~-~---- 148 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQ--FIPGVRVDALVREG-NKVTGVQA-G-D---- 148 (429)
T ss_pred EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCE--EECCcEEEEEEEeC-CEEEEEEe-C-C----
Confidence 000 00111000000 01122345678888999999999998 99999999998775 4333 332 2 1
Q ss_pred eEEEeCEEEEccCCCCCC
Q 038157 184 CDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 184 ~~i~a~~VV~AtG~~s~~ 201 (207)
..+.|+.||+|+|.+|..
T Consensus 149 ~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 149 DILEANVVILADGVNSML 166 (429)
T ss_pred eEEECCEEEEccCcchhh
Confidence 469999999999987653
No 17
>PRK06185 hypothetical protein; Provisional
Probab=99.69 E-value=3.1e-16 Score=124.74 Aligned_cols=161 Identities=20% Similarity=0.237 Sum_probs=88.5
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCc---eeeeCCCCC--CCcCCCCCCcceecccccccccccCC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGG---TWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLP 107 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
.+.+||+|||||++|+++|+.|++.|++|+|+|+.+.... .....+... ...++..+............+.....
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 4568999999999999999999999999999999753211 000111100 11111111000000000000000000
Q ss_pred cceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEE
Q 038157 108 REVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDE 186 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i 186 (207)
...... ..+... ........+..+..+.+.|.+.+++. +++ ++++++|+++..++++...|.+...++ ..++
T Consensus 84 ~~~~~~--~~~~~~-~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~~~v~~v~~~~~~g--~~~i 156 (407)
T PRK06185 84 GRTVTL--ADFSRL-PTPYPYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEGGRVTGVRARTPDG--PGEI 156 (407)
T ss_pred CeEEEe--cchhhc-CCCCCcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeCCEEEEEEEEcCCC--cEEE
Confidence 000000 011000 00011112345667888888887664 677 899999999988764444466554221 2479
Q ss_pred EeCEEEEccCCCCC
Q 038157 187 IYDAVVVCNGHYTE 200 (207)
Q Consensus 187 ~a~~VV~AtG~~s~ 200 (207)
.||.||+|+|.+|.
T Consensus 157 ~a~~vI~AdG~~S~ 170 (407)
T PRK06185 157 RADLVVGADGRHSR 170 (407)
T ss_pred EeCEEEECCCCchH
Confidence 99999999999984
No 18
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.68 E-value=3.4e-16 Score=123.93 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=90.1
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCce--------eeeCCCCC--CCcCCCCCCcceecccccccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGT--------WVYTPRVE--SDQLGVDPNRAVIHTSLYSSL 102 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~--------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 102 (207)
...+||+|||||++|+++|+.|+++|++|+|+||.+.+... ....+... ...+++.+.........+..+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 45689999999999999999999999999999997643200 00111000 011111111000000000000
Q ss_pred cccCCcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCc
Q 038157 103 RTNLPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDG 182 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~ 182 (207)
..+.... .....+...............+..+.+.|.+.+++.+++ ++++++|+++..++ +.+.|++.++
T Consensus 84 ~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~g---- 153 (392)
T PRK08773 84 RVWDAGG---GGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDA-DRVRLRLDDG---- 153 (392)
T ss_pred EEEeCCC---CceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecC-CeEEEEECCC----
Confidence 0000000 000000000000001112345678888899989888888 99999999999876 6677776553
Q ss_pred eeEEEeCEEEEccCCCCC
Q 038157 183 DCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 183 ~~~i~a~~VV~AtG~~s~ 200 (207)
.++.||.||+|+|.+|.
T Consensus 154 -~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 154 -RRLEAALAIAADGAAST 170 (392)
T ss_pred -CEEEeCEEEEecCCCch
Confidence 26899999999999885
No 19
>PRK06184 hypothetical protein; Provisional
Probab=99.68 E-value=8.8e-16 Score=125.17 Aligned_cols=158 Identities=22% Similarity=0.215 Sum_probs=90.3
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCc---eeeeCCCCC--CCcCCCCCCcceecccccccccccCCcc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGG---TWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLPRE 109 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
++||+|||||++|+++|+.|++.|++|+||||.+.+.. .....+... ...+++.+...... ..+..........
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~-~~~~~~~~~~~~~ 81 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAG-GLYPPMRIYRDDG 81 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcC-ccccceeEEeCCc
Confidence 58999999999999999999999999999999865421 111111100 11112111000000 0000000000000
Q ss_pred eeccccccccccCC----CCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeE
Q 038157 110 VMGFTDYPFTARDD----GSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCD 185 (207)
Q Consensus 110 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~ 185 (207)
.. ....+..... ..........+..+.+.|.+.+.+.+++ ++++++|++++.++ +.+.+++....+ .++
T Consensus 82 ~~--~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~~~~--~~~ 154 (502)
T PRK06184 82 SV--AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHR--VEFGCELVGFEQDA-DGVTARVAGPAG--EET 154 (502)
T ss_pred eE--EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEEcC-CcEEEEEEeCCC--eEE
Confidence 00 0000000000 0001112244567788888888888888 99999999998877 567777654322 357
Q ss_pred EEeCEEEEccCCCCC
Q 038157 186 EIYDAVVVCNGHYTE 200 (207)
Q Consensus 186 i~a~~VV~AtG~~s~ 200 (207)
+.||+||.|||++|.
T Consensus 155 i~a~~vVgADG~~S~ 169 (502)
T PRK06184 155 VRARYLVGADGGRSF 169 (502)
T ss_pred EEeCEEEECCCCchH
Confidence 999999999999985
No 20
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.67 E-value=1.5e-15 Score=115.65 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=88.1
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCC---CCcCCCCCCcceecccccccccccCCcceec
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVE---SDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
+||+|||||++|+++|+.|++.|++|+|+||...++..+.. .... ...+..... ...... .......
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~-~~~~~~~~~~l~~~~~------~~~~~~---~~~~~~~ 70 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCG-GALSPRVLEELDLPLE------LIVNLV---RGARFFS 70 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCccccc-CccCHhHHHHhcCCch------hhhhhe---eeEEEEc
Confidence 69999999999999999999999999999998765431110 0000 000000000 000000 0000000
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVV 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV 192 (207)
......... ..........+..+.+.|.+.+++.+++ ++++++|+++..++ +.+.+.+.++ ..++++|+||
T Consensus 71 ~~~~~~~~~--~~~~~~~~i~r~~l~~~l~~~~~~~gv~--~~~~~~v~~~~~~~-~~~~~~~~~~----~~~~~a~~vv 141 (295)
T TIGR02032 71 PNGDSVEIP--IETELAYVIDRDAFDEQLAERAQEAGAE--LRLGTTVLDVEIHD-DRVVVIVRGG----EGTVTAKIVI 141 (295)
T ss_pred CCCcEEEec--cCCCcEEEEEHHHHHHHHHHHHHHcCCE--EEeCcEEeeEEEeC-CEEEEEEcCc----cEEEEeCEEE
Confidence 000000000 0011122356678999999999988888 99999999998877 5555655432 2478999999
Q ss_pred EccCCCCC
Q 038157 193 VCNGHYTE 200 (207)
Q Consensus 193 ~AtG~~s~ 200 (207)
+|+|.+|.
T Consensus 142 ~a~G~~s~ 149 (295)
T TIGR02032 142 GADGSRSI 149 (295)
T ss_pred ECCCcchH
Confidence 99998874
No 21
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.67 E-value=5.7e-16 Score=122.38 Aligned_cols=155 Identities=23% Similarity=0.263 Sum_probs=92.5
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC-C---CCceeeeCCCCC--CCcCCCCCCcceecccccccccccCCc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSN-R---IGGTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLPR 108 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~-~---~gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
.+||+|||||++|+++|+.|++.|++|+|+|+.+ . .+.......... ...+|+.+...................
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999972 2 121222222211 111222110000000000000000000
Q ss_pred ceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcC-CceeEEeceEEEEEEeecCCcEEEEEE-ecCCCceeEE
Q 038157 109 EVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFG-IDEMVRFESEVVNVGLMENNKWKVKSK-LRNGDGDCDE 186 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~V~~l~~~~~~~~~v~~~-~~~~~~~~~i 186 (207)
. .. ..+...............+..+...|.+.+.+.+ ++ ++++++|+.+..++ +.+.+++. ++. ++
T Consensus 82 ~--~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~--~~~~~~v~~~~~~~-~~v~v~l~~dG~-----~~ 149 (387)
T COG0654 82 R--RL--LIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVT--LRFGAEVEAVEQDG-DGVTVTLSFDGE-----TL 149 (387)
T ss_pred c--ee--EEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcE--EEcCceEEEEEEcC-CceEEEEcCCCc-----EE
Confidence 0 00 0011110011222334567899999999998776 67 99999999999998 56667777 433 79
Q ss_pred EeCEEEEccCCCCCC
Q 038157 187 IYDAVVVCNGHYTEP 201 (207)
Q Consensus 187 ~a~~VV~AtG~~s~~ 201 (207)
.||+||.|||.+|.-
T Consensus 150 ~a~llVgADG~~S~v 164 (387)
T COG0654 150 DADLLVGADGANSAV 164 (387)
T ss_pred ecCEEEECCCCchHH
Confidence 999999999998863
No 22
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.67 E-value=2.9e-16 Score=124.85 Aligned_cols=159 Identities=15% Similarity=0.139 Sum_probs=89.5
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec--cccccccccc--CCcce
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH--TSLYSSLRTN--LPREV 110 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 110 (207)
.+||+|||||++|+++|+.|++.|++|+|+|+.+..................+.+....+. ..+++.+... .+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 4799999999999999999999999999999976321100000000000001111111110 1112222110 00000
Q ss_pred ecccc------ccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCcee
Q 038157 111 MGFTD------YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDC 184 (207)
Q Consensus 111 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~ 184 (207)
..+.+ ..+...............+..+.+.|.+.+++.+++ +++++++++++.++ +.+.|++.++ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g-----~ 153 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSG-DDWLLTLADG-----R 153 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcC-CeEEEEECCC-----C
Confidence 00000 001000000000012244567778888888877887 89999999998876 6677877653 3
Q ss_pred EEEeCEEEEccCCCCCC
Q 038157 185 DEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 185 ~i~a~~VV~AtG~~s~~ 201 (207)
++.||+||+|||.+|.-
T Consensus 154 ~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 154 QLRAPLVVAADGANSAV 170 (405)
T ss_pred EEEeCEEEEecCCCchh
Confidence 68999999999999864
No 23
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.67 E-value=1.5e-15 Score=112.73 Aligned_cols=144 Identities=22% Similarity=0.212 Sum_probs=90.4
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
..++||+|||||++|+++|+.|+++|.+|+|+||...+|+.... ........ ........ + ..
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~-gg~~~~~~-------~~~~~~~~-~--------l~ 81 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWG-GGMLFSKI-------VVEKPAHE-I--------LD 81 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccC-CCcceecc-------cccchHHH-H--------HH
Confidence 35699999999999999999999999999999999887654221 11000000 00000000 0 00
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCC--cEEEEEEec------CCCcee
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENN--KWKVKSKLR------NGDGDC 184 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~--~~~v~~~~~------~~~~~~ 184 (207)
..+.++... ...........+.+.|.+.+.+.+++ ++++++|.++..++++ ..+|.+... ...+..
T Consensus 82 ~~gi~~~~~----~~g~~~~~~~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~ 155 (254)
T TIGR00292 82 EFGIRYEDE----GDGYVVADSAEFISTLASKALQAGAK--IFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPL 155 (254)
T ss_pred HCCCCeeec----cCceEEeeHHHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCE
Confidence 011111111 00111234467888888899899988 9999999999987642 445655321 111236
Q ss_pred EEEeCEEEEccCCCC
Q 038157 185 DEIYDAVVVCNGHYT 199 (207)
Q Consensus 185 ~i~a~~VV~AtG~~s 199 (207)
.+.|+.||.|||+.+
T Consensus 156 ~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 156 TQRSRVVVDATGHDA 170 (254)
T ss_pred EEEcCEEEEeecCCc
Confidence 799999999999765
No 24
>PRK06126 hypothetical protein; Provisional
Probab=99.67 E-value=2.1e-15 Score=124.18 Aligned_cols=162 Identities=15% Similarity=0.195 Sum_probs=91.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC---ceeeeCCCCC--CCcCCCCCCccee--ccccccc--cc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG---GTWVYTPRVE--SDQLGVDPNRAVI--HTSLYSS--LR 103 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~--~~ 103 (207)
...+||+|||||++|+++|+.|+++|++|+|+||.+.+. .....+.... ...+|+.+..... ....... +.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence 446899999999999999999999999999999975432 1111111110 1111211110000 0000000 00
Q ss_pred c-cCCcceeccccccccccCC------------CCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCC
Q 038157 104 T-NLPREVMGFTDYPFTARDD------------GSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENN 169 (207)
Q Consensus 104 ~-~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~ 169 (207)
. ........ ..+..... ..........+..+.+.|.+.+++. +++ ++++++|+++..++ +
T Consensus 85 ~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~ 158 (545)
T PRK06126 85 TRLTGYELAR---FRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVT--LRYGHRLTDFEQDA-D 158 (545)
T ss_pred ecCCCceeee---eecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCce--EEeccEEEEEEECC-C
Confidence 0 00000000 00000000 0000112245567888888888764 677 99999999999877 5
Q ss_pred cEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 170 KWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 170 ~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
.+.+++.+..+++..++.+|+||+|||++|.
T Consensus 159 ~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 159 GVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred eEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 5677776644443467999999999999985
No 25
>PRK08244 hypothetical protein; Provisional
Probab=99.66 E-value=1.5e-15 Score=123.59 Aligned_cols=149 Identities=25% Similarity=0.252 Sum_probs=91.2
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC---ceeeeCCCCC--CCcCCCCCCcceecccccccccccC-Cc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG---GTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL-PR 108 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 108 (207)
++||+|||||++|+++|+.|++.|++|+||||.+.+. ......+... ...+++. +.+.... ..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~-----------~~l~~~~~~~ 70 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLL-----------ERFLEKGRKL 70 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcH-----------HHHHhhcccc
Confidence 4899999999999999999999999999999976531 1111111111 1111111 1111100 00
Q ss_pred ceeccc----cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCcee
Q 038157 109 EVMGFT----DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDC 184 (207)
Q Consensus 109 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~ 184 (207)
....+. ...+... ...........+..+.+.|.+.+++.+++ ++++++++++..++ +.+.+++.+.++ .+
T Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~~~~~i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g--~~ 144 (493)
T PRK08244 71 PSGHFAGLDTRLDFSAL-DTSSNYTLFLPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDG-DGVEVVVRGPDG--LR 144 (493)
T ss_pred cceEEecccccCCcccC-CCCCCcEEEecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcC-CeEEEEEEeCCc--cE
Confidence 000000 0111100 00011112245678888999999888888 99999999998876 667777765332 25
Q ss_pred EEEeCEEEEccCCCCC
Q 038157 185 DEIYDAVVVCNGHYTE 200 (207)
Q Consensus 185 ~i~a~~VV~AtG~~s~ 200 (207)
+++||+||.|+|.+|.
T Consensus 145 ~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 145 TLTSSYVVGADGAGSI 160 (493)
T ss_pred EEEeCEEEECCCCChH
Confidence 7999999999999984
No 26
>PRK07045 putative monooxygenase; Reviewed
Probab=99.66 E-value=1.4e-15 Score=120.30 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=89.0
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC---ceeeeCCCCC--CCcCCCCCCcceecccccccccccCC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG---GTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLP 107 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
+.++||+|||||++|+++|+.|+++|++|+|+||.+.+. +.....+... ...+++.+............+.....
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHD 82 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecC
Confidence 345899999999999999999999999999999987541 1111111111 11122211100000000000000000
Q ss_pred cceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHH-cCCceeEEeceEEEEEEeecCC-cEEEEEEecCCCceeE
Q 038157 108 REVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSE-FGIDEMVRFESEVVNVGLMENN-KWKVKSKLRNGDGDCD 185 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~V~~l~~~~~~-~~~v~~~~~~~~~~~~ 185 (207)
... .....+... ..........+..+.+.|.+.+.. .+++ ++++++|++++.++++ .+.|++.++ ++
T Consensus 83 g~~--~~~~~~~~~--~~~g~~~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g-----~~ 151 (388)
T PRK07045 83 KEL--IASLDYRSA--SALGYFILIPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGTVTSVTLSDG-----ER 151 (388)
T ss_pred CcE--EEEecCCcc--ccCCceEEccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCcEEEEEeCCC-----CE
Confidence 000 000111100 000111124566788888887754 4677 9999999999987644 346776543 36
Q ss_pred EEeCEEEEccCCCCC
Q 038157 186 EIYDAVVVCNGHYTE 200 (207)
Q Consensus 186 i~a~~VV~AtG~~s~ 200 (207)
+.+|.||.|||.+|.
T Consensus 152 ~~~~~vIgADG~~S~ 166 (388)
T PRK07045 152 VAPTVLVGADGARSM 166 (388)
T ss_pred EECCEEEECCCCChH
Confidence 899999999999985
No 27
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.66 E-value=5.2e-16 Score=122.74 Aligned_cols=150 Identities=26% Similarity=0.251 Sum_probs=88.1
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCc--eeeeCCCCC--CCcCCCCCCcceecccccccccccC-
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGG--TWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL- 106 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 106 (207)
.+..+||+|||||++|+++|+.|++.|++|+|||+.+.+.. .+....... ...++ ++..+....
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lg-----------l~~~~~~~~~ 72 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLG-----------LWARLAPHAA 72 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhC-----------chhhhHhhcc
Confidence 34568999999999999999999999999999999864321 111100000 00011 111111000
Q ss_pred Ccceecccc----------ccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEE
Q 038157 107 PREVMGFTD----------YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSK 176 (207)
Q Consensus 107 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~ 176 (207)
+.....+.+ ..+...........+...+..+.+.|.+.+.+.+.. .+++++|+++..++ +.+.|++.
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~~ 149 (388)
T PRK07494 73 PLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNI--TRFGDEAESVRPRE-DEVTVTLA 149 (388)
T ss_pred eeeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcC-CeEEEEEC
Confidence 000000000 000000000000112245668888888888777554 57899999998876 66777775
Q ss_pred ecCCCceeEEEeCEEEEccCCCCC
Q 038157 177 LRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 177 ~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
++ .++.||.||+|+|.+|.
T Consensus 150 ~g-----~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 150 DG-----TTLSARLVVGADGRNSP 168 (388)
T ss_pred CC-----CEEEEeEEEEecCCCch
Confidence 53 36899999999999885
No 28
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.66 E-value=1.2e-15 Score=125.12 Aligned_cols=69 Identities=12% Similarity=-0.055 Sum_probs=53.5
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
.....+...+...+++.|++ ++++++|+++..++++.+.|++.+..+++...+.|+.||+|+|.|+..+
T Consensus 146 vdp~rl~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l 214 (546)
T PRK11101 146 VDPFRLTAANMLDAKEHGAQ--ILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHI 214 (546)
T ss_pred ECHHHHHHHHHHHHHhCCCE--EEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHH
Confidence 44567777777788889998 9999999999887645566887765443345799999999999998643
No 29
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.66 E-value=6.8e-15 Score=112.36 Aligned_cols=118 Identities=30% Similarity=0.441 Sum_probs=84.5
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecccc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTD 115 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (207)
+||+|||||++|+++|..|++.|.+|+|+|+.+ +||.+..... ...
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~---------------------------------~~~ 46 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTE---------------------------------VEN 46 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeeccc---------------------------------ccc
Confidence 699999999999999999999999999999875 5655431100 000
Q ss_pred ccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEcc
Q 038157 116 YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCN 195 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~At 195 (207)
++.. ........+...+.+.+++.+++ +++ ++|+++..++ +.|.+.+.++ ..+.+|+||+|+
T Consensus 47 ~~~~---------~~~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~v~~~~-~~~~v~~~~~-----~~~~~d~liiAt 108 (300)
T TIGR01292 47 YPGF---------PEGISGPELMEKMKEQAVKFGAE--IIY-EEVIKVDLSD-RPFKVKTGDG-----KEYTAKAVIIAT 108 (300)
T ss_pred cCCC---------CCCCChHHHHHHHHHHHHHcCCe--EEE-EEEEEEEecC-CeeEEEeCCC-----CEEEeCEEEECC
Confidence 0000 00122347778888889888887 777 8999998876 6677776542 368999999999
Q ss_pred CCCCCCCCCCCC
Q 038157 196 GHYTEPRIAEIP 207 (207)
Q Consensus 196 G~~s~~~~p~~~ 207 (207)
| +.+..|.+|
T Consensus 109 G--~~~~~~~i~ 118 (300)
T TIGR01292 109 G--ASARKLGIP 118 (300)
T ss_pred C--CCcccCCCC
Confidence 9 455555543
No 30
>PRK07190 hypothetical protein; Provisional
Probab=99.66 E-value=1.6e-15 Score=122.72 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=88.9
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCce---eeeCCCCC--CCcCCCCCCcceecccccccccccCC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGT---WVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLP 107 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
...+||+|||||++|+++|+.|++.|++|+||||.+.+... ....+... ...+++.+..... .........+..
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~-~~~~~~~~~~~~ 81 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPL-GKPCNTSSVWAN 81 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhh-CccceeEEEecC
Confidence 34589999999999999999999999999999998654211 00111100 0001110000000 000000000000
Q ss_pred cceeccccccccccCC-CCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEE
Q 038157 108 REVMGFTDYPFTARDD-GSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDE 186 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i 186 (207)
...... ...+..... .........++..+.+.|.+.+++.|++ ++++++|+++..++ +.+.+++.++ +++
T Consensus 82 g~~i~~-~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~-~~v~v~~~~g-----~~v 152 (487)
T PRK07190 82 GKFISR-QSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQ-AGCLTTLSNG-----ERI 152 (487)
T ss_pred CceEee-ccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeeEEEECCC-----cEE
Confidence 000000 000000000 0011112245567888898888888988 99999999999887 5566665442 379
Q ss_pred EeCEEEEccCCCCC
Q 038157 187 IYDAVVVCNGHYTE 200 (207)
Q Consensus 187 ~a~~VV~AtG~~s~ 200 (207)
.|++||.|+|.+|.
T Consensus 153 ~a~~vVgADG~~S~ 166 (487)
T PRK07190 153 QSRYVIGADGSRSF 166 (487)
T ss_pred EeCEEEECCCCCHH
Confidence 99999999999884
No 31
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.66 E-value=5.6e-15 Score=118.37 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=88.3
Q ss_pred cccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC----CceeeeCCCCCCCcCCCCCCcceecccccccccccC
Q 038157 31 LSIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI----GGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNL 106 (207)
Q Consensus 31 ~~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
++.+++||+|||||++|+++|+.|++.|++|+|+||.... |+.+.. .....++..... ... .........
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~---~~l~~lgl~~~~--~~~-~i~~~~~~~ 108 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPL---CMVGEFDLPLDI--IDR-KVTKMKMIS 108 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccH---hHHhhhcCcHHH--HHH-HhhhheEec
Confidence 4456799999999999999999999999999999987431 222110 000011111100 000 000000000
Q ss_pred CcceeccccccccccCCCCCCCCC--CCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeec--CCcEEEEEEecC---
Q 038157 107 PREVMGFTDYPFTARDDGSGDPRR--FPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLME--NNKWKVKSKLRN--- 179 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~--~~~~~v~~~~~~--- 179 (207)
+. ........ ....... ...+..+.++|.+.+.+.|++ ++.+ +++++.... ++.+.|++.+..
T Consensus 109 p~------~~~v~~~~-~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~--~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~ 178 (450)
T PLN00093 109 PS------NVAVDIGK-TLKPHEYIGMVRREVLDSFLRERAQSNGAT--LING-LFTRIDVPKDPNGPYVIHYTSYDSGS 178 (450)
T ss_pred CC------ceEEEecc-cCCCCCeEEEecHHHHHHHHHHHHHHCCCE--EEec-eEEEEEeccCCCCcEEEEEEeccccc
Confidence 00 00000000 0001111 257789999999999999988 7654 577776532 245677775421
Q ss_pred -CCceeEEEeCEEEEccCCCCC
Q 038157 180 -GDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 180 -~~~~~~i~a~~VV~AtG~~s~ 200 (207)
+++..++.||.||.|||.+|.
T Consensus 179 ~~g~~~~v~a~~VIgADG~~S~ 200 (450)
T PLN00093 179 GAGTPKTLEVDAVIGADGANSR 200 (450)
T ss_pred cCCCccEEEeCEEEEcCCcchH
Confidence 111357999999999998875
No 32
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.65 E-value=2.4e-15 Score=124.48 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=97.2
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCC--CCCccee------------ccc
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGV--DPNRAVI------------HTS 97 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~------------~~~ 97 (207)
...++||+|||+|.||++||+.+++.|.+|+|+||....+++.....+......+. .+..... ...
T Consensus 9 ~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 88 (598)
T PRK09078 9 IDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQD 88 (598)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHH
Confidence 34579999999999999999999999999999999866555443333322111110 0110000 000
Q ss_pred ccccccccCCcc--eeccccccccccCC--------CCCC----------CCCC---CChhHHHHHHHHHHHHcCCceeE
Q 038157 98 LYSSLRTNLPRE--VMGFTDYPFTARDD--------GSGD----------PRRF---PGHAEVLRYLEEFVSEFGIDEMV 154 (207)
Q Consensus 98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~----------~~~~---~~~~~~~~~l~~~~~~~~~~~~v 154 (207)
....+....+.. ++.-.+.+|....+ .... ...+ .....+...|.+.+++.+++ +
T Consensus 89 lv~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~--i 166 (598)
T PRK09078 89 AIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAE--F 166 (598)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCE--E
Confidence 011111111100 00000111111000 0000 0001 12346788888888888888 9
Q ss_pred EeceEEEEEEeecC-CcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 155 RFESEVVNVGLMEN-NKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 155 ~~~~~V~~l~~~~~-~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
+.++.++++..+++ .+.+|.+.+..+++...+.|+.||+|||+++...
T Consensus 167 ~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~ 215 (598)
T PRK09078 167 FIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAY 215 (598)
T ss_pred EEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcccc
Confidence 99999999987652 4566776543334356889999999999998754
No 33
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.65 E-value=9.4e-16 Score=121.41 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=87.3
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC---ce-e-----eeCCCCC--CCcCCCCCCcceeccccccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG---GT-W-----VYTPRVE--SDQLGVDPNRAVIHTSLYSS 101 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g---g~-~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 101 (207)
...+||+|||||++|+++|+.|++.|++|+|+|+.+... +. . ...+... ...+++.+.........+..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRR 82 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccce
Confidence 346899999999999999999999999999999975321 00 0 0000000 01111111100000000000
Q ss_pred ccccCCcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCC
Q 038157 102 LRTNLPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNG 180 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~ 180 (207)
+........ ...+...............+..+.+.|.+.+++. +++ ++++++|+++..++ +.+.|++.++
T Consensus 83 ~~~~~~~~~----~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-- 153 (391)
T PRK08020 83 LETWEWETA----HVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVT--LRCPASLQALQRDD-DGWELTLADG-- 153 (391)
T ss_pred EEEEeCCCC----eEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcC-CeEEEEECCC--
Confidence 000000000 0000000000000111245567888888887766 777 88899999998776 6677777553
Q ss_pred CceeEEEeCEEEEccCCCCC
Q 038157 181 DGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 181 ~~~~~i~a~~VV~AtG~~s~ 200 (207)
.+++||.||+|+|.+|.
T Consensus 154 ---~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 154 ---EEIQAKLVIGADGANSQ 170 (391)
T ss_pred ---CEEEeCEEEEeCCCCch
Confidence 36899999999999985
No 34
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.65 E-value=2.9e-15 Score=121.94 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 133 GHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
....+...+...+++.|.+ ++.+++|+++..++ +.|.|++.+..+++...+.|+.||+|+|.|+...
T Consensus 153 d~~rl~~~l~~~A~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l 219 (508)
T PRK12266 153 DDARLVVLNARDAAERGAE--ILTRTRVVSARREN-GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQF 219 (508)
T ss_pred CHHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHH
Confidence 3456666677778888998 99999999998876 6788888764333345799999999999998543
No 35
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.65 E-value=5.3e-15 Score=116.99 Aligned_cols=148 Identities=20% Similarity=0.280 Sum_probs=87.1
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeC-CCC---CceeeeCCCCCCCcCCCCCCcceecccccccccccCCccee
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKS-NRI---GGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~-~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
|||+|||||++|+++|+.|++.|++|+|+|+. +.+ |+... .. ....++...... ...+.......+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~--~~-~l~~l~i~~~~~---~~~~~~~~~~~~~--- 71 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIP--PC-LIEEFDIPDSLI---DRRVTQMRMISPS--- 71 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcC--Hh-hhhhcCCchHHH---hhhcceeEEEcCC---
Confidence 69999999999999999999999999999997 221 11111 00 000111110000 0000000000000
Q ss_pred ccccccccccCCCCCCCCC--CCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEec---CCCceeEE
Q 038157 112 GFTDYPFTARDDGSGDPRR--FPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLR---NGDGDCDE 186 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~---~~~~~~~i 186 (207)
+...... ....... ...+..+.++|.+.+.+.|++ ++. ++|+++..++ +.+.|++.++ .+++..++
T Consensus 72 ---~~~~~~~--~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~--v~~-~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~~i 142 (388)
T TIGR02023 72 ---RVPIKVT--IPSEDGYVGMVRREVFDSYLRERAQKAGAE--LIH-GLFLKLERDR-DGVTLTYRTPKKGAGGEKGSV 142 (388)
T ss_pred ---Cceeeec--cCCCCCceEeeeHHHHHHHHHHHHHhCCCE--EEe-eEEEEEEEcC-CeEEEEEEeccccCCCcceEE
Confidence 0000000 0000111 367789999999999988987 654 4699988776 6777877652 11123579
Q ss_pred EeCEEEEccCCCCCC
Q 038157 187 IYDAVVVCNGHYTEP 201 (207)
Q Consensus 187 ~a~~VV~AtG~~s~~ 201 (207)
.||.||.|||.+|..
T Consensus 143 ~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 143 EADVVIGADGANSPV 157 (388)
T ss_pred EeCEEEECCCCCcHH
Confidence 999999999998754
No 36
>PRK07588 hypothetical protein; Provisional
Probab=99.65 E-value=1.1e-15 Score=120.94 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=86.0
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC---CceeeeCCCCC--CCcCCCCCCcceecccccccccccCCccee
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI---GGTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~---gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
||+|||||++|+++|+.|++.|++|+|+||.+.. |..+...+... ...+++.+..... ......+..... ...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~-~~~~~~~~~~~~-~g~ 79 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREA-GYQIEHVRSVDP-TGR 79 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhc-cCCccceEEEcC-CCC
Confidence 8999999999999999999999999999997653 12222211111 0111111100000 000000000000 000
Q ss_pred ccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEE
Q 038157 112 GFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAV 191 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~V 191 (207)
......................+..+.+.|.+.+. .+++ ++++++|++++.++ +.+.|++.++. .+.+|.|
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~-----~~~~d~v 150 (391)
T PRK07588 80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVE--TIFDDSIATIDEHR-DGVRVTFERGT-----PRDFDLV 150 (391)
T ss_pred EEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeE--EEeCCEEeEEEECC-CeEEEEECCCC-----EEEeCEE
Confidence 00001100000000001123455677777776553 3566 99999999998876 66778877643 5789999
Q ss_pred EEccCCCCCCC
Q 038157 192 VVCNGHYTEPR 202 (207)
Q Consensus 192 V~AtG~~s~~~ 202 (207)
|.|+|.+|.-+
T Consensus 151 IgADG~~S~vR 161 (391)
T PRK07588 151 IGADGLHSHVR 161 (391)
T ss_pred EECCCCCccch
Confidence 99999988754
No 37
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.64 E-value=7e-15 Score=121.09 Aligned_cols=166 Identities=19% Similarity=0.115 Sum_probs=96.7
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcC----CCCCCcceec------------c
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQL----GVDPNRAVIH------------T 96 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~----~~~~~~~~~~------------~ 96 (207)
...+||+|||+|.||+++|+.+++.|.+|+|+||....+++.....+...... +..+....+. .
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~ 82 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ 82 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence 35689999999999999999999999999999998665555444333222111 1111110000 0
Q ss_pred cccccccccCCcc--eeccccccccccCC--------CCC-C-CCCC---CChhHHHHHHHHHHHHcCCceeEEeceEEE
Q 038157 97 SLYSSLRTNLPRE--VMGFTDYPFTARDD--------GSG-D-PRRF---PGHAEVLRYLEEFVSEFGIDEMVRFESEVV 161 (207)
Q Consensus 97 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~-~-~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~ 161 (207)
.....+....+.. ++...+.+|....+ ... . ...+ .....+...|.+.+++.+++ ++.++.++
T Consensus 83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~~~ 160 (566)
T PRK06452 83 DAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVD--FYNEWFSL 160 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCE--EEeCcEEE
Confidence 0011111111100 00001112211100 000 0 0001 12346777788888777888 99999999
Q ss_pred EEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 162 NVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 162 ~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
++..+++.+.+|.+.+..+++...+.|+.||+|||+++.
T Consensus 161 ~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 199 (566)
T PRK06452 161 DLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGM 199 (566)
T ss_pred EEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCcccc
Confidence 999876456677777654444567899999999999874
No 38
>PRK09126 hypothetical protein; Provisional
Probab=99.64 E-value=1e-15 Score=121.25 Aligned_cols=156 Identities=21% Similarity=0.198 Sum_probs=85.3
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC--------ceeeeCCCCC--CCcCCCCCCcceecccccccccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG--------GTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRT 104 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g--------g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 104 (207)
++||+|||||++|+++|+.|+++|++|+|+||.+.+. ......+... ...+++.+...............
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 6899999999999999999999999999999986531 1111111000 01111111000000000000000
Q ss_pred cCCcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHH-HcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCce
Q 038157 105 NLPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVS-EFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGD 183 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~ 183 (207)
....... ...+...............+..+.+.|.+.+. ..+++ ++++++|++++.++ +.+.|++.++
T Consensus 83 ~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~-~~~~v~~~~g----- 151 (392)
T PRK09126 83 LNGRSPF---ALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDD-DGAQVTLANG----- 151 (392)
T ss_pred EcCCCCc---eeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcC-CeEEEEEcCC-----
Confidence 0000000 00010000000000111344566666666664 35788 99999999998776 5677777553
Q ss_pred eEEEeCEEEEccCCCCCC
Q 038157 184 CDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 184 ~~i~a~~VV~AtG~~s~~ 201 (207)
.++.||.||.|+|.+|.-
T Consensus 152 ~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 152 RRLTARLLVAADSRFSAT 169 (392)
T ss_pred CEEEeCEEEEeCCCCchh
Confidence 368999999999988763
No 39
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.64 E-value=2.9e-15 Score=117.34 Aligned_cols=163 Identities=19% Similarity=0.212 Sum_probs=98.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCC--CeEEEEeeCCCCCceeeeCC-CCCCCcCCCCCCcc--ee--------------
Q 038157 34 QSINVAVIGAGAAGLVAARELRREG--HKVVVLEKSNRIGGTWVYTP-RVESDQLGVDPNRA--VI-------------- 94 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g--~~v~liE~~~~~gg~~~~~~-~~~~~~~~~~~~~~--~~-------------- 94 (207)
+++||+|||||+.|+++|+.|++.+ ++|+|+||...++...+.++ +.....+...+... .+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999987 99999999987764333222 21122222222210 00
Q ss_pred ----------------------cccccccccccCCcceecccc------ccccc--cCC-CCCCCCCCCChhHHHHHHHH
Q 038157 95 ----------------------HTSLYSSLRTNLPREVMGFTD------YPFTA--RDD-GSGDPRRFPGHAEVLRYLEE 143 (207)
Q Consensus 95 ----------------------~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~ 143 (207)
...+++....+........+. .|... ... ........+....+...|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 011112211111110000000 00000 000 11122233455688889999
Q ss_pred HHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 144 FVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 144 ~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
.+.++|.+ ++++++|++++.++++.+.+.+.+++ .+ ++|+.||+|.|.+|.++
T Consensus 162 ~a~~~g~~--i~ln~eV~~i~~~~dg~~~~~~~~g~---~~-~~ak~Vin~AGl~Ad~l 214 (429)
T COG0579 162 EAQANGVE--LRLNTEVTGIEKQSDGVFVLNTSNGE---ET-LEAKFVINAAGLYADPL 214 (429)
T ss_pred HHHHcCCE--EEecCeeeEEEEeCCceEEEEecCCc---EE-EEeeEEEECCchhHHHH
Confidence 99999999 99999999999998445666666544 22 99999999999988654
No 40
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.64 E-value=4.8e-15 Score=119.86 Aligned_cols=166 Identities=20% Similarity=0.263 Sum_probs=92.4
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC--CCceeeeCCCCCCCcCCCCCCc--ceeccccccccc-----
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNR--IGGTWVYTPRVESDQLGVDPNR--AVIHTSLYSSLR----- 103 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~--~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----- 103 (207)
+..+||+|||+|++|+++|+.|++.|.+|+||||... .||....+.+.....-...... .......+..+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG 81 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCC
Confidence 3468999999999999999999999999999999864 4554443332110000000000 000000111100
Q ss_pred -----------ccCCc--ceeccccccccccCCC-C--CCCCC--CCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEe
Q 038157 104 -----------TNLPR--EVMGFTDYPFTARDDG-S--GDPRR--FPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGL 165 (207)
Q Consensus 104 -----------~~~~~--~~~~~~~~~~~~~~~~-~--~~~~~--~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~ 165 (207)
..... +++.-.+..+...... . ..... ......+...|.+.+++.+++ ++++++|+++..
T Consensus 82 ~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~--i~~~t~v~~l~~ 159 (466)
T PRK08274 82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVE--IRYDAPVTALEL 159 (466)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEe
Confidence 00000 0000001111111000 0 00000 112356778888888888998 999999999988
Q ss_pred ecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 166 MENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 166 ~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
+++..+.|.+.+.. ++...+.|+.||+|+|+++..
T Consensus 160 ~~g~v~gv~~~~~~-g~~~~i~a~~VIlAtGg~~~n 194 (466)
T PRK08274 160 DDGRFVGARAGSAA-GGAERIRAKAVVLAAGGFESN 194 (466)
T ss_pred cCCeEEEEEEEccC-CceEEEECCEEEECCCCCCCC
Confidence 65345566664322 223578999999999988653
No 41
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.64 E-value=1.6e-15 Score=119.80 Aligned_cols=153 Identities=15% Similarity=0.152 Sum_probs=88.2
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCc--------eeeeCCCCC--CCcCCCCCCcceecccccccccccC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGG--------TWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL 106 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg--------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
||+|||||++|+++|+.|+++|++|+|+||.+.++. .....+... ...+++.+............+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999876431 111111100 0111111110000000000000000
Q ss_pred CcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcC-CceeEEeceEEEEEEeecCCcEEEEEEecCCCceeE
Q 038157 107 PREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFG-IDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCD 185 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~ 185 (207)
..... ...+...............+..+.+.|.+.+.+.+ ++ ++++++|+++..++ +.+.+++.++. .
T Consensus 81 ~~~~~---~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~-~~~~v~~~~g~-----~ 149 (385)
T TIGR01988 81 GGSFG---ALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVT--LLCPARVVELPRHS-DHVELTLDDGQ-----Q 149 (385)
T ss_pred CCCCc---eEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecC-CeeEEEECCCC-----E
Confidence 00000 00000000000011123456788888998888876 77 99999999998876 66777776532 5
Q ss_pred EEeCEEEEccCCCCC
Q 038157 186 EIYDAVVVCNGHYTE 200 (207)
Q Consensus 186 i~a~~VV~AtG~~s~ 200 (207)
+.+|.||.|+|.+|.
T Consensus 150 ~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 150 LRARLLVGADGANSK 164 (385)
T ss_pred EEeeEEEEeCCCCCH
Confidence 899999999999886
No 42
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.64 E-value=2.1e-15 Score=119.24 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=87.1
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCc---eeeeCCCCCCCcCCCCCCcceec--ccccccccc--cC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGG---TWVYTPRVESDQLGVDPNRAVIH--TSLYSSLRT--NL 106 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~ 106 (207)
+++||+|||||++|+++|+.|++.|++|+|+||.+.+.. .+. .. ...+.+....+. ..+++.+.. ..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~--~r----~~~l~~~~~~~l~~~g~~~~~~~~~~~ 77 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWD--SR----VYAISPSSQAFLERLGVWQALDAARLA 77 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCC--Cc----eEeecHHHHHHHHHcCchhhhhhhcCC
Confidence 368999999999999999999999999999999866422 110 00 000000000000 011111100 00
Q ss_pred Ccceeccc-----cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcC-CceeEEeceEEEEEEeecCCcEEEEEEecCC
Q 038157 107 PREVMGFT-----DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFG-IDEMVRFESEVVNVGLMENNKWKVKSKLRNG 180 (207)
Q Consensus 107 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~ 180 (207)
+.....+. ...+...............+..+.+.|.+.+++.+ ++ ++ +++|+++..++ +.+.|++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~-~~~~v~~~~g-- 151 (388)
T PRK07608 78 PVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLT--WF-PARAQGLEVDP-DAATLTLADG-- 151 (388)
T ss_pred cceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecC-CeEEEEECCC--
Confidence 00000000 00000000000001112346688888988888876 65 66 99999998776 6677777653
Q ss_pred CceeEEEeCEEEEccCCCCC
Q 038157 181 DGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 181 ~~~~~i~a~~VV~AtG~~s~ 200 (207)
.++.||.||+|+|.+|.
T Consensus 152 ---~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 152 ---QVLRADLVVGADGAHSW 168 (388)
T ss_pred ---CEEEeeEEEEeCCCCch
Confidence 36899999999999886
No 43
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.64 E-value=5.7e-15 Score=117.99 Aligned_cols=165 Identities=21% Similarity=0.243 Sum_probs=102.4
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCc--cee-----------------
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNR--AVI----------------- 94 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~----------------- 94 (207)
..+||+|||||+.|+-+|+.++.+|++|+|+|+++...|+...+++...-.+.+.... ...
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 6799999999999999999999999999999999877666554444321111111000 000
Q ss_pred ---ccccccccc----------------------ccCCcc-eeccc----cccccccCC---CCCCCCCCCChhHHHHHH
Q 038157 95 ---HTSLYSSLR----------------------TNLPRE-VMGFT----DYPFTARDD---GSGDPRRFPGHAEVLRYL 141 (207)
Q Consensus 95 ---~~~~~~~~~----------------------~~~~~~-~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~l 141 (207)
....+..+. +..+.. ..... ..|...+.. .............+...+
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 000000000 000000 00000 000000000 001111223334666777
Q ss_pred HHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 142 EEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 142 ~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
...+.+.|.+ ++..++|+.+..++ +.|+|.+.|..+++...++|+.||.|+|.|+..
T Consensus 171 a~~A~~~Ga~--il~~~~v~~~~re~-~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 171 ARDAAEHGAE--ILTYTRVESLRREG-GVWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHhcccc--hhhcceeeeeeecC-CEEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 7778889998 99999999999998 589999999888778999999999999999764
No 44
>PRK06834 hypothetical protein; Provisional
Probab=99.63 E-value=3.4e-15 Score=120.98 Aligned_cols=147 Identities=19% Similarity=0.168 Sum_probs=89.5
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC---c-eeeeCCCCC--CCcCCCCCCcceecccccccccccCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG---G-TWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLP 107 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g---g-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
..+||+|||||++|+++|+.|++.|++|+|+||.+.+. . ......... ...++ +++.+.....
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lG-----------l~~~l~~~~~ 70 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRG-----------IADRFLAQGQ 70 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcC-----------cHHHHHhcCC
Confidence 35899999999999999999999999999999976431 1 001111100 00111 1111111000
Q ss_pred c---ceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCcee
Q 038157 108 R---EVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDC 184 (207)
Q Consensus 108 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~ 184 (207)
. .........+... ...........+..+.+.|.+.+++.+++ ++++++|+++..++ +.+.+++.++ .
T Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~-~~v~v~~~~g-----~ 141 (488)
T PRK06834 71 VAQVTGFAATRLDISDF-PTRHNYGLALWQNHIERILAEWVGELGVP--IYRGREVTGFAQDD-TGVDVELSDG-----R 141 (488)
T ss_pred ccccceeeeEecccccC-CCCCCccccccHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CeEEEEECCC-----C
Confidence 0 0000000000000 00001112245567888899988888888 99999999999887 5667766442 3
Q ss_pred EEEeCEEEEccCCCCC
Q 038157 185 DEIYDAVVVCNGHYTE 200 (207)
Q Consensus 185 ~i~a~~VV~AtG~~s~ 200 (207)
++.||+||.|+|.+|.
T Consensus 142 ~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 142 TLRAQYLVGCDGGRSL 157 (488)
T ss_pred EEEeCEEEEecCCCCC
Confidence 6899999999999985
No 45
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.63 E-value=6.8e-15 Score=121.16 Aligned_cols=159 Identities=20% Similarity=0.263 Sum_probs=90.7
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCc---eeeeCCCCC--CCcCCCCCCcceeccccccccccc-C
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGG---TWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTN-L 106 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~ 106 (207)
+..+||+|||||++|+++|+.|++.|++|+||||.+.+.. .+....... ...+++.+...... ..+...... .
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~-~~~~~~~~~~~ 99 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKG-VSWNVGKVFLR 99 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhC-ceeeceeEEeC
Confidence 3568999999999999999999999999999999865421 122221111 11112211100000 000000000 0
Q ss_pred CcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeE
Q 038157 107 PREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCD 185 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~ 185 (207)
..... .+.................+..+.+.|.+.+++. +++ ++++++|+++..++ +.+.+++.+.++ ..+
T Consensus 100 ~~~~~---~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~v~v~~~~~~g--~~~ 171 (547)
T PRK08132 100 DEEVY---RFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHD-DGVTLTVETPDG--PYT 171 (547)
T ss_pred CCeEE---EecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcC-CEEEEEEECCCC--cEE
Confidence 00000 0010000000000111234567788888888775 567 99999999999877 667776654332 246
Q ss_pred EEeCEEEEccCCCCC
Q 038157 186 EIYDAVVVCNGHYTE 200 (207)
Q Consensus 186 i~a~~VV~AtG~~s~ 200 (207)
+.||+||.|+|.+|.
T Consensus 172 i~ad~vVgADG~~S~ 186 (547)
T PRK08132 172 LEADWVIACDGARSP 186 (547)
T ss_pred EEeCEEEECCCCCcH
Confidence 899999999999885
No 46
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.63 E-value=2e-15 Score=120.02 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=89.3
Q ss_pred ccEEEECCChhHHHHHHHHHHCC--CeEEEEeeCCCCC-----ceeeeCCCCC--CCcCCCCCCcceecccccccccccC
Q 038157 36 INVAVIGAGAAGLVAARELRREG--HKVVVLEKSNRIG-----GTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL 106 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g--~~v~liE~~~~~g-----g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
+||+|||||++|+++|+.|++.| ++|+|+||.+... ......+... ...+++.+........ ...+....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~-~~~~~~~~ 80 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQP-ITDMVITD 80 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCc-ccEEEEEe
Confidence 79999999999999999999985 9999999975421 1111111110 1112221110000000 00000000
Q ss_pred Cc--ceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCcee
Q 038157 107 PR--EVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDC 184 (207)
Q Consensus 107 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~ 184 (207)
.. .........+...............+..+.+.|.+.+.+.+++ ++++++|++++.++ +.+.|++.++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g-----~ 152 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGID--LREATSVTDFETRD-EGVTVTLSDG-----S 152 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CEEEEEECCC-----C
Confidence 00 0000000000000000001112356678999999999888888 99999999998876 6677776553 3
Q ss_pred EEEeCEEEEccCCCCCC
Q 038157 185 DEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 185 ~i~a~~VV~AtG~~s~~ 201 (207)
.+.||.||.|+|.+|.-
T Consensus 153 ~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 153 VLEARLLVAADGARSKL 169 (403)
T ss_pred EEEeCEEEEcCCCChHH
Confidence 68999999999998763
No 47
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.63 E-value=3.5e-15 Score=117.55 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=50.4
Q ss_pred CCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCCC
Q 038157 131 FPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRIA 204 (207)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~p 204 (207)
+.....+...+.+.+.+.+++ ++.+++|+++..++ +.+.|++.++ .+.||.||+|+|.|+..+.+
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g------~~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAE--LLFNEPVTAIEADG-DGVTVTTADG------TYEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCE--EECCCEEEEEEeeC-CeEEEEeCCC------EEEeeEEEEecCcchhhhcc
Confidence 344456777777777788888 89999999999876 5666765542 48999999999999877655
No 48
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.63 E-value=1.8e-15 Score=119.98 Aligned_cols=159 Identities=23% Similarity=0.256 Sum_probs=89.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC---ceeeeCCCCC--CCcCCCCCCcceecccccccccccCCc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG---GTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLPR 108 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
++.||+|||||++|+++|+.|++.|++|+|+||.+.++ ......+... ...+++.+..... ......+......
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~-~~~~~~~~~~~~~ 81 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQR-AVFTDHLTMMDAV 81 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhh-ccCCcceEEEeCC
Confidence 35799999999999999999999999999999986542 2222222211 1111211110000 0000000000000
Q ss_pred ceecccccccccc-CCCCCCCCCCCChhHHHHHHHHHHHHcC-CceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEE
Q 038157 109 EVMGFTDYPFTAR-DDGSGDPRRFPGHAEVLRYLEEFVSEFG-IDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDE 186 (207)
Q Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i 186 (207)
........+.... ............+..+.+.|.+.+.+.+ ++ ++++++|+++..++ +.+.+++.++ .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~g-----~~~ 153 (396)
T PRK08163 82 DAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVE--FRTSTHVVGIEQDG-DGVTVFDQQG-----NRW 153 (396)
T ss_pred CCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcE--EEeCCEEEEEecCC-CceEEEEcCC-----CEE
Confidence 0000000000000 0000011123456778888888887664 67 89999999998766 5677776553 368
Q ss_pred EeCEEEEccCCCCCC
Q 038157 187 IYDAVVVCNGHYTEP 201 (207)
Q Consensus 187 ~a~~VV~AtG~~s~~ 201 (207)
.||.||+|+|.+|..
T Consensus 154 ~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 154 TGDALIGCDGVKSVV 168 (396)
T ss_pred ecCEEEECCCcChHH
Confidence 999999999998865
No 49
>PRK07538 hypothetical protein; Provisional
Probab=99.63 E-value=3.5e-15 Score=118.95 Aligned_cols=151 Identities=21% Similarity=0.184 Sum_probs=89.1
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC---ceeeeCCCCC--CCcCCCCCCcceecccccccccccC-Ccce
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG---GTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL-PREV 110 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 110 (207)
||+|||||++|+++|+.|++.|++|+|+||.+.+. ......+... ...+++. +.+.... ....
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~-----------~~l~~~~~~~~~ 70 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLL-----------DALDAIGIRTRE 70 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCH-----------HHHHhhCCCCcc
Confidence 89999999999999999999999999999986532 2222211111 0011111 1111000 0000
Q ss_pred eccc---ccc-ccc--c-CCCCCCCCCCCChhHHHHHHHHHHHHc-C-CceeEEeceEEEEEEeecCCcEEEEEEecCCC
Q 038157 111 MGFT---DYP-FTA--R-DDGSGDPRRFPGHAEVLRYLEEFVSEF-G-IDEMVRFESEVVNVGLMENNKWKVKSKLRNGD 181 (207)
Q Consensus 111 ~~~~---~~~-~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~ 181 (207)
..+. +.. +.. . ............+..+.+.|.+.+.+. + .. ++++++|+++..++ +.+.+.+.++..+
T Consensus 71 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~--i~~~~~v~~~~~~~-~~~~~~~~~~~~g 147 (413)
T PRK07538 71 LAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDA--VRTGHRVVGFEQDA-DVTVVFLGDRAGG 147 (413)
T ss_pred eEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecC-CceEEEEeccCCC
Confidence 0000 000 000 0 000111122356778888888887653 5 35 89999999998876 4466666665444
Q ss_pred ceeEEEeCEEEEccCCCCCC
Q 038157 182 GDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 182 ~~~~i~a~~VV~AtG~~s~~ 201 (207)
+.++++||.||.|||.+|.-
T Consensus 148 ~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 148 DLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred ccceEEeeEEEECCCCCHHH
Confidence 34689999999999999853
No 50
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.63 E-value=8.6e-15 Score=119.23 Aligned_cols=166 Identities=20% Similarity=0.217 Sum_probs=94.0
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCC-------cCCCCCCcceeccc--------
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESD-------QLGVDPNRAVIHTS-------- 97 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~-------~~~~~~~~~~~~~~-------- 97 (207)
..++||||||+|.+|+++|+.+++.|.+|+||||.+..||+.....+.... ..+..+....+...
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 138 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 138 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCC
Confidence 357899999999999999999999999999999998777654433321110 01111110000000
Q ss_pred ----ccccccccCCc--ceecccccccccc--CCCCCCCC------CCCChhHHHHHHHHHHHHcCCceeEEeceEEEEE
Q 038157 98 ----LYSSLRTNLPR--EVMGFTDYPFTAR--DDGSGDPR------RFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNV 163 (207)
Q Consensus 98 ----~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l 163 (207)
+...+...... +++.-.+..+... .......+ .......+...|.+.+++.+++ ++++++|+++
T Consensus 139 ~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l 216 (506)
T PRK06481 139 NDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIP--LFVNADVTKI 216 (506)
T ss_pred CCHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCe--EEeCCeeEEE
Confidence 00001000000 0000000111100 00000000 1112345778888888888988 9999999999
Q ss_pred EeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 164 GLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 164 ~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
..+++....|.+...+ ++...+.||.||+|+|+++..
T Consensus 217 ~~~~g~V~Gv~~~~~~-g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 217 TEKDGKVTGVKVKING-KETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred EecCCEEEEEEEEeCC-CeEEEEecCeEEEeCCCcccC
Confidence 8765344556665432 223578999999999998764
No 51
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.63 E-value=5.6e-15 Score=117.30 Aligned_cols=160 Identities=19% Similarity=0.206 Sum_probs=90.9
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC---CceeeeCCCCC--CCcCCCCCCcceecccccccccccCCcce
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI---GGTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLPREV 110 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~---gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
-+|+|||||++|+++|+.|+++|++|+|+||.+.+ |......+... ...+++.+....... ....+........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~-~~~~~~~~~g~~~ 81 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGV-TPKALYLMDGRKA 81 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhccc-CcceEEEecCCCc
Confidence 58999999999999999999999999999997653 22333222211 111222111000000 0000000000000
Q ss_pred eccccccccccCCC-CCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEe
Q 038157 111 MGFTDYPFTARDDG-SGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIY 188 (207)
Q Consensus 111 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a 188 (207)
.............. .........+..+.+.|.+.+.+. +++ ++++++|+++..++ +.+.+++.++++. ..+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~-~~v~v~~~~~~~~--~~~~a 156 (400)
T PRK06475 82 RPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTG-NSITATIIRTNSV--ETVSA 156 (400)
T ss_pred ceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCC-CceEEEEEeCCCC--cEEec
Confidence 00000000000000 001111246678889998888664 677 99999999998776 6677877654322 46899
Q ss_pred CEEEEccCCCCCC
Q 038157 189 DAVVVCNGHYTEP 201 (207)
Q Consensus 189 ~~VV~AtG~~s~~ 201 (207)
|.||.|||.+|.-
T Consensus 157 dlvIgADG~~S~v 169 (400)
T PRK06475 157 AYLIACDGVWSML 169 (400)
T ss_pred CEEEECCCccHhH
Confidence 9999999999864
No 52
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.62 E-value=2.6e-15 Score=119.42 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=85.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeC-CCC--Cc-----eeeeCCC--CCCCcCCCCCCcceecccccccccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKS-NRI--GG-----TWVYTPR--VESDQLGVDPNRAVIHTSLYSSLRT 104 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~-~~~--gg-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (207)
.+||+|||||++|+++|+.|++.|++|+|+|+. +.. +. ......+ .....+|+ ++.+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl-----------~~~l~~ 72 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGA-----------WQGIEA 72 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCc-----------hhhhhh
Confidence 589999999999999999999999999999995 211 10 0000000 00111121 222211
Q ss_pred c--CCcceeccc------cccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEE
Q 038157 105 N--LPREVMGFT------DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKS 175 (207)
Q Consensus 105 ~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~ 175 (207)
. .+...+... ...+..................+.+.|.+.+.+. +++ ++++++|+++..++ +.+.|++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~~~v~~ 149 (405)
T PRK08850 73 RRAAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVT--LLMPARCQSIAVGE-SEAWLTL 149 (405)
T ss_pred hhCCcccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeE--EEcCCeeEEEEeeC-CeEEEEE
Confidence 0 000000000 0001000000000001123456777777777664 577 89999999998876 5677777
Q ss_pred EecCCCceeEEEeCEEEEccCCCCCC
Q 038157 176 KLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 176 ~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
.++ +.+.||+||.|||.+|.-
T Consensus 150 ~~g-----~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 150 DNG-----QALTAKLVVGADGANSWL 170 (405)
T ss_pred CCC-----CEEEeCEEEEeCCCCChh
Confidence 653 369999999999998863
No 53
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.62 E-value=8.1e-15 Score=121.73 Aligned_cols=168 Identities=16% Similarity=0.153 Sum_probs=97.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCC--CCCccee------------ccccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGV--DPNRAVI------------HTSLY 99 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~------------~~~~~ 99 (207)
.++||+|||+|.||++||+.+++.|.+|+|+||....+++.....+......+. .+....+ .....
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv 128 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 128 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 468999999999999999999999999999999876655444333322111110 1111000 00111
Q ss_pred ccccccCCcceecc--ccccccccCC--------CCCC----------CCCC---CChhHHHHHHHHHHHHcCCceeEEe
Q 038157 100 SSLRTNLPREVMGF--TDYPFTARDD--------GSGD----------PRRF---PGHAEVLRYLEEFVSEFGIDEMVRF 156 (207)
Q Consensus 100 ~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~----------~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~ 156 (207)
..+....+.....+ .+.+|....+ .... ...+ .....+...|.+.+.+.+++ ++.
T Consensus 129 ~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~ 206 (635)
T PLN00128 129 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQ--FFV 206 (635)
T ss_pred HHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCE--EEE
Confidence 11111111110000 0122211100 0000 0001 13456778888888888888 999
Q ss_pred ceEEEEEEee-cCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCC
Q 038157 157 ESEVVNVGLM-ENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 157 ~~~V~~l~~~-~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
++.++++..+ ++.+.++.+.+..+++...+.|+.||+|||+++....
T Consensus 207 ~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~ 254 (635)
T PLN00128 207 EYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRAYF 254 (635)
T ss_pred eeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccccc
Confidence 9999998876 3345667765544444578899999999999987543
No 54
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.62 E-value=3.2e-15 Score=121.68 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=54.1
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
.....+...+...+++.|.+ ++.+++|+++..++ +.|.|++.++. ++..++.|+.||+|+|.|+...
T Consensus 152 vd~~rl~~~l~~~a~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 152 VDDARLVVLNALDAAERGAT--ILTRTRCVSARREG-GLWRVETRDAD-GETRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred ecHHHHHHHHHHHHHHCCCE--EecCcEEEEEEEcC-CEEEEEEEeCC-CCEEEEEecEEEECCCccHHHH
Confidence 34557777788888889998 99999999998876 67888887765 3356799999999999998644
No 55
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.61 E-value=4.4e-15 Score=117.28 Aligned_cols=155 Identities=14% Similarity=0.139 Sum_probs=85.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC-----Cc---e-eeeCCCCC--CCcCCCCCCcceeccccccccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI-----GG---T-WVYTPRVE--SDQLGVDPNRAVIHTSLYSSLR 103 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~-----gg---~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 103 (207)
.+||+|||||++|+++|+.|++.|++|+|+|+.+.. ++ . ....+... ...+|+.+............+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 379999999999999999999999999999986421 00 0 01111111 1112222111000000000000
Q ss_pred ccCCcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCc
Q 038157 104 TNLPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDG 182 (207)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~ 182 (207)
...... ....+..... ..........+..+...|.+.+.+. +++ ++++++|++++.++ +.+.|++.++
T Consensus 83 ~~~~~~--~~~~~~~~~~--~~~~~g~~i~~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~-~~~~v~~~~g---- 151 (384)
T PRK08849 83 TWEHPE--CRTRFHSDEL--NLDQLGYIVENRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSA-EGNRVTLESG---- 151 (384)
T ss_pred EEeCCC--ceEEeccccc--CCCccEEEEEcHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcC-CeEEEEECCC----
Confidence 000000 0000000000 0000012233456677777776554 566 89999999998876 5677888763
Q ss_pred eeEEEeCEEEEccCCCCCC
Q 038157 183 DCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 183 ~~~i~a~~VV~AtG~~s~~ 201 (207)
.+++||+||+|||.+|.-
T Consensus 152 -~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 152 -AEIEAKWVIGADGANSQV 169 (384)
T ss_pred -CEEEeeEEEEecCCCchh
Confidence 379999999999998874
No 56
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.61 E-value=5.6e-15 Score=117.93 Aligned_cols=162 Identities=24% Similarity=0.359 Sum_probs=92.8
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCc-------CCCCCCcceec------------cc
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQ-------LGVDPNRAVIH------------TS 97 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~-------~~~~~~~~~~~------------~~ 97 (207)
||||||+|.+|+++|+.|+++|.+|+|+||.+..|++...+.+..... .+..+...... ..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 899999999999999999999999999999988776554443322111 11111010000 00
Q ss_pred ccccccccCCc--ceecccccccccc--------CCCCCCC-------------CCCCChhHHHHHHHHHHHHcCCceeE
Q 038157 98 LYSSLRTNLPR--EVMGFTDYPFTAR--------DDGSGDP-------------RRFPGHAEVLRYLEEFVSEFGIDEMV 154 (207)
Q Consensus 98 ~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~v 154 (207)
+...+.+.... +++.-...++... ....... ........+...|.+.+++.+++ +
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~--i 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVD--I 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCee--e
Confidence 00000000000 0000000111110 0000000 11124567889999999999988 9
Q ss_pred EeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 155 RFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 155 ~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
+++++++++..+++.+.++.+.+..+++...+.|+.||+|||+++.
T Consensus 159 ~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred eccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 9999999999987566778888655555678999999999999885
No 57
>PLN02985 squalene monooxygenase
Probab=99.61 E-value=1.6e-14 Score=117.47 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=86.3
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCc---eeeeCCCCC--CCcCCCCCCcceecccccccccccC
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGG---TWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL 106 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
....+||+|||||++|+++|+.|++.|++|+|+||...... .....++.. ...+|+.+............+....
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~ 119 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK 119 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE
Confidence 35678999999999999999999999999999999743111 111111111 1112222111000000000010000
Q ss_pred CcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeE
Q 038157 107 PREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCD 185 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~ 185 (207)
..... ...++................+..+.+.|.+.+++. +++ +. ..+++++..+++...+|++.+.++. ..+
T Consensus 120 ~g~~~-~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~--i~-~gtvv~li~~~~~v~gV~~~~~dG~-~~~ 194 (514)
T PLN02985 120 DGKEA-VAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVR--LE-EGTVKSLIEEKGVIKGVTYKNSAGE-ETT 194 (514)
T ss_pred CCEEE-EEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeE--EE-eeeEEEEEEcCCEEEEEEEEcCCCC-EEE
Confidence 00000 001110000000001112345568888888888766 455 55 4567887766533345666543222 346
Q ss_pred EEeCEEEEccCCCCCC
Q 038157 186 EIYDAVVVCNGHYTEP 201 (207)
Q Consensus 186 i~a~~VV~AtG~~s~~ 201 (207)
+.||.||+|||.+|.-
T Consensus 195 ~~AdLVVgADG~~S~v 210 (514)
T PLN02985 195 ALAPLTVVCDGCYSNL 210 (514)
T ss_pred EECCEEEECCCCchHH
Confidence 7899999999999874
No 58
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.61 E-value=1.1e-14 Score=120.90 Aligned_cols=168 Identities=17% Similarity=0.135 Sum_probs=97.5
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCC--CCCccee------------ccccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGV--DPNRAVI------------HTSLY 99 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~------------~~~~~ 99 (207)
.++||+|||+|.||+++|+.+++.|.+|+|+||....+++.....+......+. .+..... ...+.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 468999999999999999999999999999999876665544443322111110 1111000 00011
Q ss_pred ccccccCCcc--eeccccccccccCC--------CCCC----------CCCC---CChhHHHHHHHHHHHHcCCceeEEe
Q 038157 100 SSLRTNLPRE--VMGFTDYPFTARDD--------GSGD----------PRRF---PGHAEVLRYLEEFVSEFGIDEMVRF 156 (207)
Q Consensus 100 ~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~----------~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~ 156 (207)
..+....+.. ++.-.+.+|..... .... ...+ .....+...|.+.+++.+++ ++.
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~ 185 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCN--FFI 185 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCE--EEe
Confidence 1111111100 00000111211100 0000 0000 12457888888888888988 999
Q ss_pred ceEEEEEEe-ecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCC
Q 038157 157 ESEVVNVGL-MENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 157 ~~~V~~l~~-~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
++.++++.. +++.+.+|.+.+..+++...+.|+.||+|||+++....
T Consensus 186 ~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~ 233 (617)
T PTZ00139 186 EYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYF 233 (617)
T ss_pred ceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccccC
Confidence 999999987 44345567665543444578899999999999987543
No 59
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.61 E-value=3.5e-15 Score=117.82 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=87.1
Q ss_pred cEEEECCChhHHHHHHHHHHCC-CeEEEEeeCCCCCce-------eeeCCCCC--CCcCCCCCCcceecccccccccccC
Q 038157 37 NVAVIGAGAAGLVAARELRREG-HKVVVLEKSNRIGGT-------WVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL 106 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g-~~v~liE~~~~~gg~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
||+|||||++|+++|+.|++.| ++|+|+||.+.+... ....+... ...+++.+........ ...+....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~-~~~~~~~~ 79 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATP-ILDIHVSD 79 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCc-cceEEEEc
Confidence 8999999999999999999999 999999998654211 11111100 1111211110000000 00000000
Q ss_pred CcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHH-cCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeE
Q 038157 107 PREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSE-FGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCD 185 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~ 185 (207)
... .....+...............+..+.+.|.+.+.+ .+++ ++++++|+++..++ +.+.|++.++ .+
T Consensus 80 -~~~--~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~g-----~~ 148 (382)
T TIGR01984 80 -QGH--FGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQ-DYVRVTLDNG-----QQ 148 (382)
T ss_pred -CCC--CceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcC-CeEEEEECCC-----CE
Confidence 000 00000000000000011224567889999998887 4888 89999999998776 5677777553 26
Q ss_pred EEeCEEEEccCCCCC
Q 038157 186 EIYDAVVVCNGHYTE 200 (207)
Q Consensus 186 i~a~~VV~AtG~~s~ 200 (207)
+.||.||+|+|.+|.
T Consensus 149 ~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 149 LRAKLLIAADGANSK 163 (382)
T ss_pred EEeeEEEEecCCChH
Confidence 899999999999885
No 60
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.61 E-value=1.5e-14 Score=118.64 Aligned_cols=169 Identities=23% Similarity=0.200 Sum_probs=96.6
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCccee------------ccccc
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVI------------HTSLY 99 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 99 (207)
...++||+|||+|.||+++|+.+++.|.+|+|+||....+|+.....+......+..+..... .....
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v 92 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAV 92 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 345799999999999999999999999999999998776654444333221111111111000 00001
Q ss_pred ccccccCCcc--eeccccccccccCC--------CCC--CCCCC----CChhHHHHHHHHHHHHcCCceeEEeceEEEEE
Q 038157 100 SSLRTNLPRE--VMGFTDYPFTARDD--------GSG--DPRRF----PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNV 163 (207)
Q Consensus 100 ~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~--~~~~~----~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l 163 (207)
..+....+.. ++.-.+.++..... ... ....+ .....+...|.+.+++.+++ ++.++.|+++
T Consensus 93 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~--i~~~~~v~~L 170 (541)
T PRK07804 93 RSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLD--IREHALALDL 170 (541)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCE--EEECeEeeee
Confidence 1111100000 00000111111100 000 01111 13457888899988888888 9999999999
Q ss_pred EeecC-CcEEEEEEec---CCCceeEEEeCEEEEccCCCCCCC
Q 038157 164 GLMEN-NKWKVKSKLR---NGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 164 ~~~~~-~~~~v~~~~~---~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
..+++ ...++.+.+. ..++...+.|+.||+|||+++..+
T Consensus 171 i~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~ 213 (541)
T PRK07804 171 LTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLY 213 (541)
T ss_pred EEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCC
Confidence 87653 4556666521 122235789999999999998643
No 61
>PRK06753 hypothetical protein; Provisional
Probab=99.61 E-value=5.1e-15 Score=116.52 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=84.8
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC---ceeeeCCCCC--CCcCCCCCCcceecccccccccccCCccee
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG---GTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
||+|||||++|+++|+.|+++|++|+|+||.+.+. ..+...+... ...+++.+...... .....+..... ...
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~-~~~~~~~~~~~-~g~ 79 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAG-QILSTMNLLDD-KGT 79 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcC-CcccceeEEcC-CCC
Confidence 89999999999999999999999999999986542 2222111111 00111110000000 00000000000 000
Q ss_pred ccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEE
Q 038157 112 GFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAV 191 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~V 191 (207)
......+. .........+..+.+.|.+.+.. .+ ++++++|++++.++ +.+.|++.++. .+.+|.|
T Consensus 80 ~~~~~~~~-----~~~~~~~i~R~~l~~~L~~~~~~--~~--i~~~~~v~~i~~~~-~~v~v~~~~g~-----~~~~~~v 144 (373)
T PRK06753 80 LLNKVKLK-----SNTLNVTLHRQTLIDIIKSYVKE--DA--IFTGKEVTKIENET-DKVTIHFADGE-----SEAFDLC 144 (373)
T ss_pred EEeecccc-----cCCccccccHHHHHHHHHHhCCC--ce--EEECCEEEEEEecC-CcEEEEECCCC-----EEecCEE
Confidence 00000000 00112235667777888776653 35 89999999998766 67888876643 6899999
Q ss_pred EEccCCCCCC
Q 038157 192 VVCNGHYTEP 201 (207)
Q Consensus 192 V~AtG~~s~~ 201 (207)
|.|+|.+|.-
T Consensus 145 igadG~~S~v 154 (373)
T PRK06753 145 IGADGIHSKV 154 (373)
T ss_pred EECCCcchHH
Confidence 9999988753
No 62
>PRK07236 hypothetical protein; Provisional
Probab=99.60 E-value=1.2e-14 Score=114.83 Aligned_cols=145 Identities=21% Similarity=0.187 Sum_probs=82.2
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC----CceeeeCCCCC--CCcCCCCCCcceecccccccccccCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI----GGTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLP 107 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~----gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
+..||+|||||++|+++|+.|++.|++|+|+||.+.. |+.....+... ...+++.+.. . ....
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~----------~~~~ 73 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-D----------IGVP 73 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-c----------cccC
Confidence 3589999999999999999999999999999997532 22222221111 1111211110 0 0000
Q ss_pred cceecccc-ccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEE
Q 038157 108 REVMGFTD-YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDE 186 (207)
Q Consensus 108 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i 186 (207)
.....+.. ...... .............+.+.|.+.+ .+.+ ++++++|++++.++ +.+.|++.++. ++
T Consensus 74 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~-----~~ 141 (386)
T PRK07236 74 SRERIYLDRDGRVVQ--RRPMPQTQTSWNVLYRALRAAF--PAER--YHLGETLVGFEQDG-DRVTARFADGR-----RE 141 (386)
T ss_pred ccceEEEeCCCCEee--ccCCCccccCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecC-CeEEEEECCCC-----EE
Confidence 00000000 000000 0000111223445555554332 2344 89999999998876 66778887643 68
Q ss_pred EeCEEEEccCCCCCC
Q 038157 187 IYDAVVVCNGHYTEP 201 (207)
Q Consensus 187 ~a~~VV~AtG~~s~~ 201 (207)
.||.||.|+|.+|.-
T Consensus 142 ~ad~vIgADG~~S~v 156 (386)
T PRK07236 142 TADLLVGADGGRSTV 156 (386)
T ss_pred EeCEEEECCCCCchH
Confidence 999999999999874
No 63
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.60 E-value=6.3e-15 Score=116.02 Aligned_cols=146 Identities=14% Similarity=0.171 Sum_probs=88.3
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC-------CceeeeCCCCC--CCcCCCCCCcceecccccccccccC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI-------GGTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL 106 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~-------gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
+||+|||||++|+++|+.|++.|++|+|+|+.+.. +......+... ...+++ ++.+....
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl-----------~~~l~~~~ 70 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDI-----------WEELEKFV 70 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCc-----------HHHHHhhc
Confidence 69999999999999999999999999999986421 11222222111 111121 11111000
Q ss_pred -Ccceecc---ccccc-cccCCCCCCCCCCCChhHHHHHHHHHHHHcC-CceeEEeceEEEEEEeecCCcEEEEEEecCC
Q 038157 107 -PREVMGF---TDYPF-TARDDGSGDPRRFPGHAEVLRYLEEFVSEFG-IDEMVRFESEVVNVGLMENNKWKVKSKLRNG 180 (207)
Q Consensus 107 -~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~ 180 (207)
+.....+ ..... ...............+..+.+.|.+.+.+.+ ++ ++++++++++..++ +.+.|++.+
T Consensus 71 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~--- 144 (374)
T PRK06617 71 AEMQDIYVVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHN-DYSIIKFDD--- 144 (374)
T ss_pred CCCcEEEEEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcC-CeEEEEEcC---
Confidence 0000000 00000 0000000011123567789999999888775 66 88899999998877 667777743
Q ss_pred CceeEEEeCEEEEccCCCCCC
Q 038157 181 DGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 181 ~~~~~i~a~~VV~AtG~~s~~ 201 (207)
.+++||.||.|||.+|.-
T Consensus 145 ---~~~~adlvIgADG~~S~v 162 (374)
T PRK06617 145 ---KQIKCNLLIICDGANSKV 162 (374)
T ss_pred ---CEEeeCEEEEeCCCCchh
Confidence 259999999999999875
No 64
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.60 E-value=4.3e-14 Score=115.55 Aligned_cols=120 Identities=20% Similarity=0.243 Sum_probs=88.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
...+||+|||||++|+++|..|++.|.+|+|+++. .||.+.....
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~--------------------------------- 253 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMG--------------------------------- 253 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCc---------------------------------
Confidence 45699999999999999999999999999999863 6766531100
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVV 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV 192 (207)
+.++. ...+.....+.+.+.+.+++.+++ ++.+++|+++...+ +.+.|.+.++ ..+.+|.||
T Consensus 254 ~~~~~----------~~~~~~~~~l~~~l~~~~~~~gv~--i~~~~~V~~I~~~~-~~~~V~~~~g-----~~i~a~~vV 315 (517)
T PRK15317 254 IENFI----------SVPETEGPKLAAALEEHVKEYDVD--IMNLQRASKLEPAA-GLIEVELANG-----AVLKAKTVI 315 (517)
T ss_pred ccccC----------CCCCCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CeEEEEECCC-----CEEEcCEEE
Confidence 00000 001234468889999999999988 88999999998876 6777876543 268999999
Q ss_pred EccCCCCCCCCCCCC
Q 038157 193 VCNGHYTEPRIAEIP 207 (207)
Q Consensus 193 ~AtG~~s~~~~p~~~ 207 (207)
+|||. .++.|++|
T Consensus 316 iAtG~--~~r~~~ip 328 (517)
T PRK15317 316 LATGA--RWRNMNVP 328 (517)
T ss_pred ECCCC--CcCCCCCC
Confidence 99995 44445443
No 65
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.60 E-value=3.5e-14 Score=118.19 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=92.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHHC-CCeEEEEeeCCCC---CceeeeCCCCC--CCcCCCCCCcceecccccccccccC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRRE-GHKVVVLEKSNRI---GGTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL 106 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~-g~~v~liE~~~~~---gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
+.++||+|||||++|+++|+.|++. |++|.||||.+.+ |......+... ...+++.+...... ........+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g-~~~~~~~~~~ 108 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEA-YWINETAFWK 108 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhc-ccccceEEEc
Confidence 4578999999999999999999995 9999999987543 22222222111 11122211100000 0000000000
Q ss_pred Ccc--eecccccc-ccccC-CCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecC--CcEEEEEEecC-
Q 038157 107 PRE--VMGFTDYP-FTARD-DGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN--NKWKVKSKLRN- 179 (207)
Q Consensus 107 ~~~--~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~--~~~~v~~~~~~- 179 (207)
... ........ ..... ..........++..+.+.|.+.+.+.+..+.+.+++++++++.+++ ..+.|++++..
T Consensus 109 ~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~ 188 (634)
T PRK08294 109 PDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG 188 (634)
T ss_pred CCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence 000 00000000 00000 0001111234566788888888887765323788999999987642 35778887542
Q ss_pred --CCceeEEEeCEEEEccCCCCCC
Q 038157 180 --GDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 180 --~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
+++.++++||+||.|||++|.-
T Consensus 189 ~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 189 EHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred CCCCceEEEEeCEEEECCCCchHH
Confidence 1223689999999999999864
No 66
>PRK07121 hypothetical protein; Validated
Probab=99.60 E-value=2.4e-14 Score=116.47 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecC-CcEEEEEEecCCCceeEEEe-CEEEEccCCCCC
Q 038157 134 HAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN-NKWKVKSKLRNGDGDCDEIY-DAVVVCNGHYTE 200 (207)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~-~~~~v~~~~~~~~~~~~i~a-~~VV~AtG~~s~ 200 (207)
...+.+.|.+.+++.+++ ++++++|+++..+++ ....|.+.+.. +...+.| +.||+|||+++.
T Consensus 176 g~~~~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~~~--~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQ--IRYDTRATRLIVDDDGRVVGVEARRYG--ETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCCEEEEEEEeCC--cEEEEEeCCEEEECCCCcCc
Confidence 456788888889888998 999999999987643 45667765422 2357889 999999999885
No 67
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.60 E-value=3.7e-14 Score=112.38 Aligned_cols=153 Identities=16% Similarity=0.212 Sum_probs=85.1
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeC-CCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYT-PRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+||+||||||+|+++|+.|++.|++|+|+||....+..+.-. +......++..... ............+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~---~~~~i~~~~~~~p~------ 71 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDI---IDRRVTKMKMISPS------ 71 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhH---HHhhhceeEEecCC------
Confidence 589999999999999999999999999999975432221100 00000111111100 00000000000000
Q ss_pred cccccccCCCCCCCC-CCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEee--cCCcEEEEEEecC----CCceeEEE
Q 038157 115 DYPFTARDDGSGDPR-RFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLM--ENNKWKVKSKLRN----GDGDCDEI 187 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~--~~~~~~v~~~~~~----~~~~~~i~ 187 (207)
............... ....+..+.++|.+.+.+.|++ ++.++ ++++... .++.+.|++.... +++..++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~--v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~ 148 (398)
T TIGR02028 72 NIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGAT--LINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLE 148 (398)
T ss_pred ceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcE--EEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEE
Confidence 000000000000111 1367788999999999999998 76664 7777542 2256777654321 12235799
Q ss_pred eCEEEEccCCCCC
Q 038157 188 YDAVVVCNGHYTE 200 (207)
Q Consensus 188 a~~VV~AtG~~s~ 200 (207)
|+.||.|||.+|.
T Consensus 149 a~~VIgADG~~S~ 161 (398)
T TIGR02028 149 VDAVIGADGANSR 161 (398)
T ss_pred eCEEEECCCcchH
Confidence 9999999998875
No 68
>PRK06996 hypothetical protein; Provisional
Probab=99.60 E-value=1.3e-14 Score=115.21 Aligned_cols=155 Identities=13% Similarity=0.115 Sum_probs=88.8
Q ss_pred cccCcccEEEECCChhHHHHHHHHHHCC----CeEEEEeeCCCCCc-----eeeeCCCCC--CCcCCCCCCcceeccccc
Q 038157 31 LSIQSINVAVIGAGAAGLVAARELRREG----HKVVVLEKSNRIGG-----TWVYTPRVE--SDQLGVDPNRAVIHTSLY 99 (207)
Q Consensus 31 ~~~~~~dv~IIG~G~aG~~~A~~l~~~g----~~v~liE~~~~~gg-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 99 (207)
|-+..+||+|||||++|+++|+.|++.| .+|+|+|+.+.... ......... ...++..+.... ..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~----~~ 82 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADAT----PI 82 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCC----cc
Confidence 3456789999999999999999999986 47999999753210 001111000 111111111000 00
Q ss_pred ccccccCCcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecC
Q 038157 100 SSLRTNLPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRN 179 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~ 179 (207)
......... ......+...............+..+.+.|.+.+++.+++ +++++++++++.+. +.+.+++.+++
T Consensus 83 ~~~~~~~~~---~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~--~~~~~~v~~~~~~~-~~v~v~~~~~~ 156 (398)
T PRK06996 83 EHIHVSQRG---HFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVR--WLTSTTAHAPAQDA-DGVTLALGTPQ 156 (398)
T ss_pred cEEEEecCC---CCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeeeeeeecC-CeEEEEECCCC
Confidence 000000000 0000000000000000112245678999999999988887 89999999998776 66778776543
Q ss_pred CCceeEEEeCEEEEccCC
Q 038157 180 GDGDCDEIYDAVVVCNGH 197 (207)
Q Consensus 180 ~~~~~~i~a~~VV~AtG~ 197 (207)
+. ++++||+||.|||.
T Consensus 157 g~--~~i~a~lvIgADG~ 172 (398)
T PRK06996 157 GA--RTLRARIAVQAEGG 172 (398)
T ss_pred cc--eEEeeeEEEECCCC
Confidence 32 57999999999996
No 69
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.60 E-value=1.6e-14 Score=114.47 Aligned_cols=156 Identities=22% Similarity=0.219 Sum_probs=86.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC------CceeeeCCCCC--CCcCCCCCCcceecccccccccccC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI------GGTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL 106 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~------gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
++||+|||||++|+++|+.|++.|++|+|+||.+.. ++.. ..+... ...+++.+...... .....+....
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~-l~~~~~~~l~~lGl~~~l~~~~-~~~~~~~~~~ 79 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGV-LEQGTVDLLREAGVGERMDREG-LVHDGIELRF 79 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeE-ECHhHHHHHHHcCChHHHHhcC-CccCcEEEEE
Confidence 579999999999999999999999999999998642 1111 111111 11122211110000 0000000000
Q ss_pred CcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEE
Q 038157 107 PREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDE 186 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i 186 (207)
.... ....+... ..........+..+.+.|.+.+.+.+++ +++++++++++..+++...|++... ++.+++
T Consensus 80 ~g~~---~~~~~~~~--~~~~~~~~~~~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~~~~~~V~~~~~--G~~~~i 150 (392)
T PRK08243 80 DGRR---HRIDLTEL--TGGRAVTVYGQTEVTRDLMAARLAAGGP--IRFEASDVALHDFDSDRPYVTYEKD--GEEHRL 150 (392)
T ss_pred CCEE---EEeccccc--cCCceEEEeCcHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecCCCceEEEEEcC--CeEEEE
Confidence 0000 00111100 0000111123456666777777777888 9999999999873325566776421 113579
Q ss_pred EeCEEEEccCCCCCC
Q 038157 187 IYDAVVVCNGHYTEP 201 (207)
Q Consensus 187 ~a~~VV~AtG~~s~~ 201 (207)
+||+||.|||.+|.-
T Consensus 151 ~ad~vVgADG~~S~v 165 (392)
T PRK08243 151 DCDFIAGCDGFHGVS 165 (392)
T ss_pred EeCEEEECCCCCCch
Confidence 999999999999864
No 70
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.59 E-value=1.3e-14 Score=119.91 Aligned_cols=167 Identities=17% Similarity=0.116 Sum_probs=96.4
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCC--CCCCccee------------ccccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLG--VDPNRAVI------------HTSLY 99 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~--~~~~~~~~------------~~~~~ 99 (207)
.++||+|||+|.||++||+.+++.|.+|+|+||....+++.....+......+ ..+....+ ...+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 35899999999999999999999999999999986665544433332211111 11111000 00111
Q ss_pred ccccccCCcce--eccccccccccCC--------CCCC---------CCCC---CChhHHHHHHHHHHHHcCCceeEEec
Q 038157 100 SSLRTNLPREV--MGFTDYPFTARDD--------GSGD---------PRRF---PGHAEVLRYLEEFVSEFGIDEMVRFE 157 (207)
Q Consensus 100 ~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~---------~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~ 157 (207)
..+....+... +.--+.+|....+ .... ...+ .....+...|.+.+.+.+++ ++.+
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~--i~~~ 163 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTT--IFSE 163 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCE--EEeC
Confidence 11111111100 0001122211100 0000 0001 13456778888888888888 9999
Q ss_pred eEEEEEEee-cCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 158 SEVVNVGLM-ENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 158 ~~V~~l~~~-~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
+.++++..+ ++.+.+|...+..+++...+.|+.||+|||+++...
T Consensus 164 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~ 209 (588)
T PRK08958 164 WYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRIY 209 (588)
T ss_pred cEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccccc
Confidence 999999975 334566776554344356789999999999998643
No 71
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.59 E-value=1.1e-14 Score=114.78 Aligned_cols=63 Identities=25% Similarity=0.248 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
.....+.+.|.+.+++.|++ ++.+++|+++..++ +.+.|.+.+ .++.||.||+|+|+|+..+.
T Consensus 142 i~p~~~~~~l~~~~~~~g~~--~~~~~~V~~i~~~~-~~~~v~~~~------~~i~a~~vV~aaG~~~~~l~ 204 (380)
T TIGR01377 142 LYAEKALRALQELAEAHGAT--VRDGTKVVEIEPTE-LLVTVKTTK------GSYQANKLVVTAGAWTSKLL 204 (380)
T ss_pred EcHHHHHHHHHHHHHHcCCE--EECCCeEEEEEecC-CeEEEEeCC------CEEEeCEEEEecCcchHHHh
Confidence 45567888888888888988 89999999998876 566666543 25899999999999976543
No 72
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.59 E-value=2.1e-14 Score=115.32 Aligned_cols=160 Identities=26% Similarity=0.310 Sum_probs=93.7
Q ss_pred cEEEECCChhHHHHHHHHHHCC-CeEEEEeeCCCCCceeeeCCCCCCCc-------CCCCCCcceecc------------
Q 038157 37 NVAVIGAGAAGLVAARELRREG-HKVVVLEKSNRIGGTWVYTPRVESDQ-------LGVDPNRAVIHT------------ 96 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g-~~v~liE~~~~~gg~~~~~~~~~~~~-------~~~~~~~~~~~~------------ 96 (207)
||||||+|.+|+++|+.++++| .+|+||||.+..||....+.+..... .+..........
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 99999999987776655443322111 111111100000
Q ss_pred cccccccccCCc--ceeccccccccccC----CCCCCC------CCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEE
Q 038157 97 SLYSSLRTNLPR--EVMGFTDYPFTARD----DGSGDP------RRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVG 164 (207)
Q Consensus 97 ~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~ 164 (207)
.+...+...... +++. ...++.... ...... ........+.+.|.+.+++.+++ ++++++|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~--i~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGID--TRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCE--EEeCCEeeEeE
Confidence 001111111000 0001 011111000 000000 11123457888899999999998 99999999999
Q ss_pred eecC-CcEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 165 LMEN-NKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 165 ~~~~-~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
.+++ ..+.|.+.+.. .....+.+|.||+|+|+++.
T Consensus 158 ~~~~g~v~Gv~~~~~~-g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKGKG-KGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEeCC-CeEEEEecceEEEecCCCCC
Confidence 8643 45567666533 22346789999999999987
No 73
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.59 E-value=5.3e-14 Score=116.42 Aligned_cols=168 Identities=17% Similarity=0.107 Sum_probs=95.8
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCC--CCCccee------------cccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGV--DPNRAVI------------HTSL 98 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~------------~~~~ 98 (207)
...+||+|||+|.||++||+.+++.|.+|+||||....+++.....+......+. .+..... ....
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~ 89 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDA 89 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHH
Confidence 3568999999999999999999999999999999866555444333322111110 0110000 0000
Q ss_pred cccccccCCcce--eccccccccccCC--------CCCC---------CCCC---CChhHHHHHHHHHHHHcCCceeEEe
Q 038157 99 YSSLRTNLPREV--MGFTDYPFTARDD--------GSGD---------PRRF---PGHAEVLRYLEEFVSEFGIDEMVRF 156 (207)
Q Consensus 99 ~~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~---------~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~ 156 (207)
...+....+... +.-.+.+|..... .... ...+ .....+...|.+.+.+.+++ ++.
T Consensus 90 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~--i~~ 167 (591)
T PRK07057 90 IEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQ--FFV 167 (591)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCE--EEe
Confidence 111100000000 0000111111000 0000 0001 12346778888888888888 999
Q ss_pred ceEEEEEEeec-CCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 157 ESEVVNVGLME-NNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 157 ~~~V~~l~~~~-~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
++.++++..++ +.+.+|.+.+..+++...+.|+.||+|||+++...
T Consensus 168 ~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~ 214 (591)
T PRK07057 168 EWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRIF 214 (591)
T ss_pred CcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccccc
Confidence 99999999753 24567777554444356788999999999988654
No 74
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.59 E-value=1.7e-14 Score=116.01 Aligned_cols=144 Identities=21% Similarity=0.314 Sum_probs=82.4
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceeccccc-ccccccCCcceecc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLY-SSLRTNLPREVMGF 113 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 113 (207)
+|||+|||||++|+++|+.++++|.+|+|+|+. .+||.+. ..+|.|.+........ ..+.. ........
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~--------~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~ 71 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCV--------IRGCVPKKLMVYGSTFGGEFED-AAGYGWTV 71 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceee--------cCCcCchHHHHHHHHHHHHHhh-hHhcCcCC
Confidence 589999999999999999999999999999995 6788776 3356666543332111 11110 00000000
Q ss_pred cc--ccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEE
Q 038157 114 TD--YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAV 191 (207)
Q Consensus 114 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~V 191 (207)
.. ..|.... .........+.+.+...+++.+++ ++.+ ++..+.. +.+.+. .+ ...+.+|+|
T Consensus 72 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~gV~--~~~g-~~~~v~~---~~v~v~-~~-----g~~~~~d~l 134 (446)
T TIGR01424 72 GKARFDWKKLL-----QKKDDEIARLSGLYKRLLANAGVE--LLEG-RARLVGP---NTVEVL-QD-----GTTYTAKKI 134 (446)
T ss_pred CCCCcCHHHHH-----HHHHHHHHHHHHHHHHHHHhCCcE--EEEE-EEEEecC---CEEEEe-cC-----CeEEEcCEE
Confidence 00 0000000 000000123445566667777876 5544 5555433 223332 12 136899999
Q ss_pred EEccCCCCCCCCCCCC
Q 038157 192 VVCNGHYTEPRIAEIP 207 (207)
Q Consensus 192 V~AtG~~s~~~~p~~~ 207 (207)
|+||| +.+..|++|
T Consensus 135 IiATG--s~p~~p~i~ 148 (446)
T TIGR01424 135 LIAVG--GRPQKPNLP 148 (446)
T ss_pred EEecC--CcCCCCCCC
Confidence 99999 777777665
No 75
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.59 E-value=7.2e-15 Score=114.64 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEE-EEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWK-VKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~-v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
.....+.+.|.+.+++.|++ ++.+++|+++..++ +.|. |.+.++ .+.||.||+|+|.|+..+
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~-~~v~gv~~~~g------~i~ad~vV~a~G~~s~~l 206 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVE--IRTGTEVTSIDVDG-GRVTGVRTSDG------EIRADRVVLAAGAWSPQL 206 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEESEEEEEEEEET-TEEEEEEETTE------EEEECEEEE--GGGHHHH
T ss_pred ccccchhhhhHHHHHHhhhh--ccccccccchhhcc-ccccccccccc------ccccceeEecccccceee
Confidence 34578899999999999998 99999999999988 6665 888762 399999999999987653
No 76
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.58 E-value=2.4e-14 Score=116.67 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=84.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC-CCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSN-RIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
.+|||+|||||+||++||+.+++.|.+|+|+|+.. .+|+ +..++.......+.................. ....+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~-m~CnpsiGG~akg~lvrEidalGg~~g~~~d---~~giq 78 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ-MSCNPAIGGIAKGHLVREIDALGGEMGKAID---KTGIQ 78 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc-cCCccccccchhhHHHHHHHhcCCHHHHHHh---hccCc
Confidence 46999999999999999999999999999999874 3432 1111110000000000000000000000000 00000
Q ss_pred cccccccccC--CCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeC
Q 038157 113 FTDYPFTARD--DGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYD 189 (207)
Q Consensus 113 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~ 189 (207)
+...... ...........+..+...+.+.+++. +++ + +..+|+++..+++...+|.+.++ ..+.|+
T Consensus 79 ---~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~--I-~q~~V~~Li~e~grV~GV~t~dG-----~~I~Ak 147 (618)
T PRK05192 79 ---FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLD--L-FQGEVEDLIVENGRVVGVVTQDG-----LEFRAK 147 (618)
T ss_pred ---eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEecCCEEEEEEECCC-----CEEECC
Confidence 1110000 01111122344556778888878765 565 4 67789998877645556777653 379999
Q ss_pred EEEEccCCCCCC
Q 038157 190 AVVVCNGHYTEP 201 (207)
Q Consensus 190 ~VV~AtG~~s~~ 201 (207)
.||+|||.|+.-
T Consensus 148 ~VIlATGTFL~g 159 (618)
T PRK05192 148 AVVLTTGTFLRG 159 (618)
T ss_pred EEEEeeCcchhc
Confidence 999999988753
No 77
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.58 E-value=3.1e-16 Score=125.17 Aligned_cols=148 Identities=22% Similarity=0.240 Sum_probs=37.1
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccccc
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDY 116 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (207)
||||||||++|++||+.+++.|.+|+|||+.+.+||......... ..+..... .....++..+........ ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~--~~~~~~~~-~~~~gi~~e~~~~~~~~~----~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSP--FDGNHDED-QVIGGIFREFLNRLRARG----GY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-E--ETTEEHHH-HHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCC--hhhcchhh-ccCCCHHHHHHHHHhhhc----cc
Confidence 899999999999999999999999999999998888654322111 00000000 111122222222111100 00
Q ss_pred cccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccC
Q 038157 117 PFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNG 196 (207)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG 196 (207)
..... .............+...|.+.+++.|++ +++++.|+++..+++..+.|++.+.++ ..++.|+.||.|||
T Consensus 74 ~~~~~--~~~~~~~~~~~~~~~~~l~~~l~e~gv~--v~~~t~v~~v~~~~~~i~~V~~~~~~g--~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 74 PQEDR--YGWVSNVPFDPEVFKAVLDEMLAEAGVE--VLLGTRVVDVIRDGGRITGVIVETKSG--RKEIRAKVFIDATG 147 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccc--cccccccccccccc
Confidence 00000 0000112334456677788888888999 999999999999875667788876543 47899999999999
Q ss_pred C
Q 038157 197 H 197 (207)
Q Consensus 197 ~ 197 (207)
-
T Consensus 148 ~ 148 (428)
T PF12831_consen 148 D 148 (428)
T ss_dssp -
T ss_pred c
Confidence 4
No 78
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.58 E-value=2e-14 Score=119.58 Aligned_cols=166 Identities=25% Similarity=0.190 Sum_probs=93.2
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCC---CCCCcceec------------ccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLG---VDPNRAVIH------------TSL 98 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~---~~~~~~~~~------------~~~ 98 (207)
.++||+|||+|.||+++|+.+++.|.+|+|+||....+++.....+......+ ..+...... ..+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~ 86 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRM 86 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHH
Confidence 46899999999999999999999999999999987655444333332221111 111110000 000
Q ss_pred cccccccCCcce--eccccccccccCC--------CCCCCCC--C---CChhHHHHHHHHHHHHc--------C-----C
Q 038157 99 YSSLRTNLPREV--MGFTDYPFTARDD--------GSGDPRR--F---PGHAEVLRYLEEFVSEF--------G-----I 150 (207)
Q Consensus 99 ~~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~--~---~~~~~~~~~l~~~~~~~--------~-----~ 150 (207)
...+..+.+... +...+.+|....+ ....... + .....+...|.+.+++. | +
T Consensus 87 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v 166 (626)
T PRK07803 87 AELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARI 166 (626)
T ss_pred HHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCce
Confidence 011111111110 0001122211100 0000000 1 12356777787777665 5 7
Q ss_pred ceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 151 DEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 151 ~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
+ ++.++.|+++..+++...++...+..+++...+.|+.||+|||+++..
T Consensus 167 ~--i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 167 K--VFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred E--EEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccCC
Confidence 7 999999999987653455565544333334678999999999997764
No 79
>PRK11445 putative oxidoreductase; Provisional
Probab=99.58 E-value=3.4e-14 Score=110.91 Aligned_cols=148 Identities=17% Similarity=0.196 Sum_probs=84.7
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC--cee-----eeCCCCC--CCcCCCCCCcceecccccccccccC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG--GTW-----VYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL 106 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g--g~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
+||+|||||++|+++|+.|++. ++|+|+||.+..+ +.. ...+... ...++..........
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~---------- 70 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIAN---------- 70 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeec----------
Confidence 7999999999999999999999 9999999876431 100 0001000 001111100000000
Q ss_pred CcceeccccccccccCCCC-CCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeE
Q 038157 107 PREVMGFTDYPFTARDDGS-GDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCD 185 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~ 185 (207)
..........+....... ........+..+.++|.+. .+.+++ ++++++|+++..++ +.+.|++.+.+ . ..+
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~~g-~-~~~ 143 (351)
T PRK11445 71 -PQIFAVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVE--VYHNSLCRKIWRED-DGYHVIFRADG-W-EQH 143 (351)
T ss_pred -cccceeeEecccccchhhcCCCcccccHHHHHHHHHHH-HhcCCE--EEcCCEEEEEEEcC-CEEEEEEecCC-c-EEE
Confidence 000000000010000000 0111235677888888875 456777 99999999998876 66888764322 1 246
Q ss_pred EEeCEEEEccCCCCCC
Q 038157 186 EIYDAVVVCNGHYTEP 201 (207)
Q Consensus 186 i~a~~VV~AtG~~s~~ 201 (207)
+.||+||+|||.+|..
T Consensus 144 i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 144 ITARYLVGADGANSMV 159 (351)
T ss_pred EEeCEEEECCCCCcHH
Confidence 8999999999998764
No 80
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.58 E-value=5.8e-14 Score=116.68 Aligned_cols=69 Identities=16% Similarity=0.034 Sum_probs=53.8
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeec--CCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLME--NNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~--~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
.....+...|...+++.|++ ++.+++|+++..++ +..+.|++.+..+++...+.||.||+|+|+|+..+
T Consensus 229 vdp~rl~~al~~~A~~~Ga~--i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l 299 (627)
T PLN02464 229 MNDSRLNVALACTAALAGAA--VLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEV 299 (627)
T ss_pred EcHHHHHHHHHHHHHhCCcE--EEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHH
Confidence 45568888888889999998 99999999998763 35566777665444345789999999999997643
No 81
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.58 E-value=2.4e-14 Score=113.23 Aligned_cols=155 Identities=20% Similarity=0.214 Sum_probs=86.2
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC------CceeeeCCCCC--CCcCCCCCCcceecccccccccccC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI------GGTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNL 106 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~------gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
++||+|||||++|+++|+.|++.|++|+|+||.+.. ++.. ...... ...+++.+...... .....+....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~-l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~~~~ 79 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGV-LEQGTVDLLREAGVDERMDREG-LVHEGTEIAF 79 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEee-ECHHHHHHHHHCCChHHHHhcC-ceecceEEee
Confidence 579999999999999999999999999999998641 1111 111111 11122211100000 0000000000
Q ss_pred CcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEE-ecCCCceeE
Q 038157 107 PREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSK-LRNGDGDCD 185 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~-~~~~~~~~~ 185 (207)
... .....+... .............+...|.+.+.+.++. ++++++++.+...+++...|++. ++. ..+
T Consensus 80 ~~~---~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~g~~--~~~~~~~v~~~~~~~~~~~V~~~~~g~---~~~ 149 (390)
T TIGR02360 80 DGQ---RFRIDLKAL--TGGKTVMVYGQTEVTRDLMEAREAAGLT--TVYDADDVRLHDLAGDRPYVTFERDGE---RHR 149 (390)
T ss_pred CCE---EEEEecccc--CCCceEEEeCHHHHHHHHHHHHHhcCCe--EEEeeeeEEEEecCCCccEEEEEECCe---EEE
Confidence 000 000111110 0000000113456677777777777777 88999988886633355677775 432 247
Q ss_pred EEeCEEEEccCCCCCC
Q 038157 186 EIYDAVVVCNGHYTEP 201 (207)
Q Consensus 186 i~a~~VV~AtG~~s~~ 201 (207)
++||.||.|||.+|.-
T Consensus 150 i~adlvIGADG~~S~V 165 (390)
T TIGR02360 150 LDCDFIAGCDGFHGVS 165 (390)
T ss_pred EEeCEEEECCCCchhh
Confidence 8999999999999863
No 82
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.58 E-value=8.8e-14 Score=114.51 Aligned_cols=118 Identities=25% Similarity=0.417 Sum_probs=82.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
..|||+|||||++|+++|+.|+++|++|+|+|+. ..||.+..... .
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~---------------------------------i 48 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSE---------------------------------V 48 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccc---------------------------------c
Confidence 3599999999999999999999999999999995 56665532100 0
Q ss_pred ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
.+++ .........+.+.+.+.+++.+++ + .+++|+++..++ +.+.|.+.++ .+.++.||+
T Consensus 49 ~~~p----------g~~~~~~~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~-~~~~V~~~~g------~~~a~~lVl 108 (555)
T TIGR03143 49 VNYP----------GILNTTGPELMQEMRQQAQDFGVK--F-LQAEVLDVDFDG-DIKTIKTARG------DYKTLAVLI 108 (555)
T ss_pred ccCC----------CCcCCCHHHHHHHHHHHHHHcCCE--E-eccEEEEEEecC-CEEEEEecCC------EEEEeEEEE
Confidence 0000 001123357778888888888886 5 478899888765 5566666431 478999999
Q ss_pred ccCCCCCCCCCCCC
Q 038157 194 CNGHYTEPRIAEIP 207 (207)
Q Consensus 194 AtG~~s~~~~p~~~ 207 (207)
||| +.+..|++|
T Consensus 109 ATG--a~p~~~~ip 120 (555)
T TIGR03143 109 ATG--ASPRKLGFP 120 (555)
T ss_pred CCC--CccCCCCCC
Confidence 999 456666654
No 83
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.58 E-value=2.6e-14 Score=118.12 Aligned_cols=167 Identities=16% Similarity=0.081 Sum_probs=93.9
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCC---CeEEEEeeCCCCCceeeeCCCCCCCcCCC--CCCccee------------c
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREG---HKVVVLEKSNRIGGTWVYTPRVESDQLGV--DPNRAVI------------H 95 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g---~~v~liE~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~------------~ 95 (207)
..++||+|||+|.||++||+.+++.| .+|+|+||....+++...+.+........ .+..... .
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d 82 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLAD 82 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCC
Confidence 45689999999999999999999998 89999999877666555444433222211 1111000 0
Q ss_pred ccccccccccCCcce--eccccccccccCC--------CCC-C-CCCC---CChhHHHHHHHHHHHH-cCCceeEEeceE
Q 038157 96 TSLYSSLRTNLPREV--MGFTDYPFTARDD--------GSG-D-PRRF---PGHAEVLRYLEEFVSE-FGIDEMVRFESE 159 (207)
Q Consensus 96 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~-~-~~~~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~ 159 (207)
..+...+..+.+... +.-.+.+|..... ... . ...+ .....+...|.+.+.+ .+++ ++.++.
T Consensus 83 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~--i~~~~~ 160 (577)
T PRK06069 83 QDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIH--FYDEHF 160 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCE--EEECCE
Confidence 000111111111100 0000111211100 000 0 0001 1234567777777765 5788 999999
Q ss_pred EEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 160 VVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 160 V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
++++..+++...++...+..+++...+.|+.||+|||+++..
T Consensus 161 v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 161 VTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred EEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence 999987653445666544333324578999999999998754
No 84
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.58 E-value=4e-14 Score=116.98 Aligned_cols=164 Identities=21% Similarity=0.171 Sum_probs=90.8
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcC---CCCCCccee------------ccccccc
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQL---GVDPNRAVI------------HTSLYSS 101 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~---~~~~~~~~~------------~~~~~~~ 101 (207)
||+|||+|.+|+++|+.+++.|.+|+|+||....+++.....+...... +..+..... ...+...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8999999999999999999999999999998765543332222111111 111110000 0000000
Q ss_pred ccccCCcc--eeccccccccccCC--------C--CCCCCCC---CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEee
Q 038157 102 LRTNLPRE--VMGFTDYPFTARDD--------G--SGDPRRF---PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLM 166 (207)
Q Consensus 102 ~~~~~~~~--~~~~~~~~~~~~~~--------~--~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~ 166 (207)
+..+.+.. ++.-.+.++....+ . ......+ .....+...|.+.+++.+++ +++++.|+++..+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~v~~L~~~ 158 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVS--FFNEYFALDLIHD 158 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCE--EEeccEEEEEEEe
Confidence 11100000 00000111111000 0 0000001 12346777888888888888 9999999999877
Q ss_pred cCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 167 ENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 167 ~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
++...+|.+.+..+++...+.|+.||+|||+++...
T Consensus 159 ~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~ 194 (566)
T TIGR01812 159 DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIY 194 (566)
T ss_pred CCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCC
Confidence 634456666543333245789999999999988643
No 85
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.58 E-value=2.5e-14 Score=117.95 Aligned_cols=166 Identities=19% Similarity=0.150 Sum_probs=96.8
Q ss_pred cccEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec------------ccccc
Q 038157 35 SINVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH------------TSLYS 100 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 100 (207)
++||+|||+|.||+++|+.+++. |.+|+|+||....+++...+.+......+..+....+. ..+..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 58999999999999999999986 58999999987777665555444333222222111110 01111
Q ss_pred cccccCCccee--ccccccccccCC--------C-CCC-CCCC---CChhHHHHHHHHHHHHc-CCceeEEeceEEEEEE
Q 038157 101 SLRTNLPREVM--GFTDYPFTARDD--------G-SGD-PRRF---PGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVG 164 (207)
Q Consensus 101 ~~~~~~~~~~~--~~~~~~~~~~~~--------~-~~~-~~~~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~ 164 (207)
.+..+.+.... .-.+.+|....+ . ... ...+ .....+...|.+.+.+. +++ ++.++.++++.
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li 160 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIM--RYDEWFVTDLL 160 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCE--EEeCeEEEEEE
Confidence 11111111100 001122211100 0 000 0111 13457788888877664 677 88999999999
Q ss_pred eecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 165 LMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 165 ~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
.+++.+.++...+..+++...+.|+.||+|||+++...
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~ 198 (580)
T TIGR01176 161 VDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRVY 198 (580)
T ss_pred eeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcccc
Confidence 87645556665543333356789999999999988643
No 86
>PLN02815 L-aspartate oxidase
Probab=99.57 E-value=2.7e-14 Score=117.73 Aligned_cols=166 Identities=17% Similarity=0.098 Sum_probs=94.8
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCccee------------cccccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVI------------HTSLYS 100 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 100 (207)
..++||+|||+|.||+++|+.+++.| +|+|+||....+++...+.+......+..+....+ ...+..
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 34689999999999999999999999 99999998877665544433222111111111000 001111
Q ss_pred cccccCCcc--eeccccccccccC--------CCCCCC-CC-C---CChhHHHHHHHHHHHHc-CCceeEEeceEEEEEE
Q 038157 101 SLRTNLPRE--VMGFTDYPFTARD--------DGSGDP-RR-F---PGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVG 164 (207)
Q Consensus 101 ~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~-~~-~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~ 164 (207)
.+....+.. ++.-.+.+|.... ...... +. + .....+...|.+.+++. +++ ++.++.++++.
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~--i~~~~~~~~Li 183 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNIT--FFEHHFAIDLL 183 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCE--EEeceEhheee
Confidence 111111110 0000011111110 000000 10 1 13456777787777654 777 99999999999
Q ss_pred eecCC----cEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 165 LMENN----KWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 165 ~~~~~----~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
.++++ +.++.+.+..+++...+.|+.||+|||+++..
T Consensus 184 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 184 TSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred eecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 75433 46777765444445678999999999998763
No 87
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.57 E-value=6.7e-14 Score=116.08 Aligned_cols=168 Identities=15% Similarity=0.050 Sum_probs=91.5
Q ss_pred CcccEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCCCCceeeeCCCC--CCCcCCCCCCcceeccc------------
Q 038157 34 QSINVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNRIGGTWVYTPRV--ESDQLGVDPNRAVIHTS------------ 97 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~~gg~~~~~~~~--~~~~~~~~~~~~~~~~~------------ 97 (207)
.++||+|||+|.||++||+.+++. |.+|+||||....++.. ...+. ....++..+........
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~ 88 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVRED 88 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCHH
Confidence 468999999999999999999998 99999999986543322 11111 11111111110000000
Q ss_pred ccccccccCCcc--eeccccccccccCCC----CCCCCCCCChhHHHHHHHHHHHHcC-CceeEEeceEEEEEEeecCCc
Q 038157 98 LYSSLRTNLPRE--VMGFTDYPFTARDDG----SGDPRRFPGHAEVLRYLEEFVSEFG-IDEMVRFESEVVNVGLMENNK 170 (207)
Q Consensus 98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~V~~l~~~~~~~ 170 (207)
+...+....+.. ++...+.++...... ............+...|.+.+++.+ ++ ++.+++|+++..+++..
T Consensus 89 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~--i~~~~~v~~Li~~~g~v 166 (608)
T PRK06854 89 LVYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDN--VLNRVFITDLLVDDNRI 166 (608)
T ss_pred HHHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCE--EEeCCEEEEEEEeCCEE
Confidence 000000000000 000011112111000 0001112344567778888887765 88 99999999998765345
Q ss_pred EEEEEEecCCCceeEEEeCEEEEccCCCCCCCCC
Q 038157 171 WKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRIA 204 (207)
Q Consensus 171 ~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~p 204 (207)
++|...+..+++...+.|+.||+|||+++....|
T Consensus 167 ~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~ 200 (608)
T PRK06854 167 AGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRP 200 (608)
T ss_pred EEEEEEEccCCcEEEEECCEEEECCCchhhccCC
Confidence 5565543333324578999999999998864433
No 88
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.57 E-value=2.1e-14 Score=115.94 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=49.9
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRIA 204 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~p 204 (207)
.+...+...|.+.+++.|++ ++.+++|+++.. + +.+.|++.++ .+.||.||+|+|+|+..+.|
T Consensus 180 i~P~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~-~-~~~~v~t~~g------~v~A~~VV~Atga~s~~l~~ 242 (460)
T TIGR03329 180 VQPGLLVRGLRRVALELGVE--IHENTPMTGLEE-G-QPAVVRTPDG------QVTADKVVLALNAWMASHFP 242 (460)
T ss_pred ECHHHHHHHHHHHHHHcCCE--EECCCeEEEEee-C-CceEEEeCCc------EEECCEEEEcccccccccCh
Confidence 45567888888889999998 999999999975 3 4566766442 48999999999999876655
No 89
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.57 E-value=1.5e-14 Score=114.56 Aligned_cols=151 Identities=27% Similarity=0.388 Sum_probs=94.1
Q ss_pred EEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcc--eec----ccccccccccCCcceec
Q 038157 39 AVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRA--VIH----TSLYSSLRTNLPREVMG 112 (207)
Q Consensus 39 ~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~ 112 (207)
+|||||++|+++|+.|+++|.+|+|+||.+.+|+.+..+++..++......... ... ......+..+...+...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999998888777666655544322211100 000 00001111111111111
Q ss_pred cc---cccccccCCCCCCCCCCC---ChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEE
Q 038157 113 FT---DYPFTARDDGSGDPRRFP---GHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDE 186 (207)
Q Consensus 113 ~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i 186 (207)
+. +..+... .....|+ ....+.+.|.+.+++.+++ ++++++|+++..++ +.+.+++.. ..+
T Consensus 81 ~~~~~Gv~~~~~----~~g~~~p~~~~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~-~~~~v~~~~------~~i 147 (400)
T TIGR00275 81 FFESLGLELKVE----EDGRVFPCSDSAADVLDALLNELKELGVE--ILTNSKVKSIKKDD-NGFGVETSG------GEY 147 (400)
T ss_pred HHHHcCCeeEEe----cCCEeECCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecC-CeEEEEECC------cEE
Confidence 10 0111110 1122232 3467888899999888988 99999999997765 567776621 358
Q ss_pred EeCEEEEccCCCCCCC
Q 038157 187 IYDAVVVCNGHYTEPR 202 (207)
Q Consensus 187 ~a~~VV~AtG~~s~~~ 202 (207)
.+|.||+|+|++|.|.
T Consensus 148 ~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 148 EADKVILATGGLSYPQ 163 (400)
T ss_pred EcCEEEECCCCcccCC
Confidence 9999999999988653
No 90
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.57 E-value=4.2e-14 Score=116.94 Aligned_cols=166 Identities=15% Similarity=0.075 Sum_probs=93.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCC---CCCCccee------------ccccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLG---VDPNRAVI------------HTSLY 99 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~---~~~~~~~~------------~~~~~ 99 (207)
+.||+|||+|.||+++|+.+++.|.+|+|+||....+++.....+......+ ..+..... .....
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 5799999999999999999999999999999987665544443332211111 11111000 00011
Q ss_pred ccccccCCcce--eccccccccccCC--------CC--CCCCCC---CChhHHHHHHHHHHHHcC----CceeEEeceEE
Q 038157 100 SSLRTNLPREV--MGFTDYPFTARDD--------GS--GDPRRF---PGHAEVLRYLEEFVSEFG----IDEMVRFESEV 160 (207)
Q Consensus 100 ~~~~~~~~~~~--~~~~~~~~~~~~~--------~~--~~~~~~---~~~~~~~~~l~~~~~~~~----~~~~v~~~~~V 160 (207)
..+....+... +.-.+.+|....+ .. .....+ .....+...|.+.+++.+ ++ ++.++.+
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~--i~~~~~~ 160 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVT--KYEGWEF 160 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcE--EEeeEEE
Confidence 11111111000 0000112211100 00 001111 134567777887776543 55 7889999
Q ss_pred EEEEeec-CCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 161 VNVGLME-NNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 161 ~~l~~~~-~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
+++..++ +.+.+|.+.+..+++...+.|+.||+|||+++..+
T Consensus 161 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~y 203 (589)
T PRK08641 161 LGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGIIF 203 (589)
T ss_pred EEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCCC
Confidence 9999753 34667877765444456789999999999998743
No 91
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.57 E-value=1.2e-14 Score=115.24 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=84.5
Q ss_pred CcccEEEECCChhHHHHHHHHHHC---CCeEEEEeeCCCCC---c-----eeeeCCCC--CCCcCCCCCCcceecccccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRRE---GHKVVVLEKSNRIG---G-----TWVYTPRV--ESDQLGVDPNRAVIHTSLYS 100 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~---g~~v~liE~~~~~g---g-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 100 (207)
..+||+|||||++|+++|+.|++. |++|+|+||..... . .....+.. ....+++ ++
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl-----------~~ 70 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGV-----------WQ 70 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCC-----------hh
Confidence 358999999999999999999998 99999999953211 0 01111000 0111121 11
Q ss_pred cccccCC-cceeccc---cc---cccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEE
Q 038157 101 SLRTNLP-REVMGFT---DY---PFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWK 172 (207)
Q Consensus 101 ~~~~~~~-~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~ 172 (207)
.+..... .....+. .. .+...............+..+.+.|.+.+.+. +++ ++++++|+++..++ +.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~-~~~~ 147 (395)
T PRK05732 71 ALADCATPITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQ-GSVR 147 (395)
T ss_pred hhHhhcCCccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcC-CeEE
Confidence 1111000 0000000 00 00000000000001234456777888777654 677 88999999998766 6677
Q ss_pred EEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 173 VKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 173 v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
|++.++ ..+.+|.||+|+|.+|.
T Consensus 148 v~~~~g-----~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 148 VTLDDG-----ETLTGRLLVAADGSHSA 170 (395)
T ss_pred EEECCC-----CEEEeCEEEEecCCChh
Confidence 877653 36899999999999875
No 92
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.57 E-value=3e-14 Score=117.73 Aligned_cols=167 Identities=20% Similarity=0.186 Sum_probs=92.8
Q ss_pred CcccEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCCCCceeeeCCCCCCCcC---CCCCCccee------------cc
Q 038157 34 QSINVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNRIGGTWVYTPRVESDQL---GVDPNRAVI------------HT 96 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~~gg~~~~~~~~~~~~~---~~~~~~~~~------------~~ 96 (207)
.++||+|||+|.||++||+.+++. |.+|+|+||....+++.....+...... ...+..... ..
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 358999999999999999999987 4899999998665544333322221111 111111000 00
Q ss_pred cccccccccCCcceecc--ccccccccCCC----------CCCCCCC---CChhHHHHHHHHHHHHcCCceeEEeceEEE
Q 038157 97 SLYSSLRTNLPREVMGF--TDYPFTARDDG----------SGDPRRF---PGHAEVLRYLEEFVSEFGIDEMVRFESEVV 161 (207)
Q Consensus 97 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~ 161 (207)
.....+..+.+.....+ .+.+|....+. ......+ .....+...|.+.+++.+++ ++.++.|+
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~--i~~~t~v~ 159 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVT--IYDEWYVM 159 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCE--EEeCcEEE
Confidence 00111111111100000 01112111000 0000011 12356778888888888888 99999999
Q ss_pred EEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 162 NVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 162 ~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
++..+++.+.++...+..+++...+.|+.||+|||+++...
T Consensus 160 ~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~ 200 (575)
T PRK05945 160 RLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVF 200 (575)
T ss_pred EEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCCC
Confidence 99876534455654333233245689999999999998643
No 93
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.57 E-value=1.6e-14 Score=115.84 Aligned_cols=158 Identities=13% Similarity=0.207 Sum_probs=86.7
Q ss_pred ccEEEECCChhHHHHHHHHHH----CCCeEEEEeeCCCCCce---eeeCCC-CCCCcCCCCCCccee--ccccccccccc
Q 038157 36 INVAVIGAGAAGLVAARELRR----EGHKVVVLEKSNRIGGT---WVYTPR-VESDQLGVDPNRAVI--HTSLYSSLRTN 105 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~----~g~~v~liE~~~~~gg~---~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~ 105 (207)
|||+|||||++|+++|+.|++ .|++|+|||+.+.+... ...... .......+.+....+ ...+++.+...
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999998 79999999995432110 000000 000111111111000 01122222111
Q ss_pred C--Ccceecc-cc-----ccccccCCCCCCCCCCCChhHHHHHHHHHHHHcC---CceeEEeceEEEEEEee------cC
Q 038157 106 L--PREVMGF-TD-----YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFG---IDEMVRFESEVVNVGLM------EN 168 (207)
Q Consensus 106 ~--~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~v~~~~~V~~l~~~------~~ 168 (207)
. +.....+ .. ..+... ...........+..+.+.|.+.+.+.+ ++ ++++++|++++.+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~--i~~~~~v~~i~~~~~~~~~~~ 157 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRD-NGKEDMACIIENDNIQNSLYNRLQEYNGDNVK--ILNPARLISVTIPSKYPNDNS 157 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecC-CCCCceEEEEEHHHHHHHHHHHHHhCCCCCeE--EecCCeeEEEEeccccccCCC
Confidence 0 0000000 00 011110 000001112456678888888887764 66 8999999999753 12
Q ss_pred CcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 169 NKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 169 ~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
+.+.|++.++ ++++||+||.|||.+|.-
T Consensus 158 ~~v~v~~~~g-----~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 158 NWVHITLSDG-----QVLYTKLLIGADGSNSNV 185 (437)
T ss_pred CceEEEEcCC-----CEEEeeEEEEecCCCChh
Confidence 4567777653 379999999999999864
No 94
>PRK14694 putative mercuric reductase; Provisional
Probab=99.57 E-value=4.7e-14 Score=114.12 Aligned_cols=149 Identities=22% Similarity=0.344 Sum_probs=82.4
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCC-cce
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLP-REV 110 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 110 (207)
+..+|||+|||||++|+.+|..|++.|.+|+|||+. .+||.|.. .+|.|.+................ ...
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n--------~GciPsk~l~~~a~~~~~~~~~~~~~g 73 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN--------IGCVPSKIMIRAAHIAHLRRESPFDDG 73 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec--------CCccccHHHHHHHHHHHHHhhccccCC
Confidence 456799999999999999999999999999999996 67888762 35555544332211111111000 000
Q ss_pred eccccccccccCCCCCCCCCCCChhHHHHHHH-----HHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCcee
Q 038157 111 MGFTDYPFTARDDGSGDPRRFPGHAEVLRYLE-----EFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDC 184 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~ 184 (207)
....... ..+...+.........+. ..+++. +++ ++ ..+++.+.. +.+.|++.++. .+
T Consensus 74 ~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~-~g~v~~id~---~~~~V~~~~g~---~~ 137 (468)
T PRK14694 74 LSAQAPV-------VDRSALLAQQQARVEELRESKYQSILRENAAIT--VL-NGEARFVDE---RTLTVTLNDGG---EQ 137 (468)
T ss_pred cccCCCc-------cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeE--EE-EEEEEEecC---CEEEEEecCCC---eE
Confidence 0000000 000000001111112111 112222 443 33 345666632 45778876643 24
Q ss_pred EEEeCEEEEccCCCCCCCCCCCC
Q 038157 185 DEIYDAVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 185 ~i~a~~VV~AtG~~s~~~~p~~~ 207 (207)
++.+|+||+||| +.+..|++|
T Consensus 138 ~~~~d~lViATG--s~p~~p~i~ 158 (468)
T PRK14694 138 TVHFDRAFIGTG--ARPAEPPVP 158 (468)
T ss_pred EEECCEEEEeCC--CCCCCCCCC
Confidence 799999999999 777777665
No 95
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.56 E-value=5.5e-14 Score=116.25 Aligned_cols=166 Identities=18% Similarity=0.102 Sum_probs=93.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCC--CCCccee------------ccccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGV--DPNRAVI------------HTSLY 99 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~------------~~~~~ 99 (207)
.++||+|||+|.||+++|+.+++. .+|+|+||....+++.....+......+. .+..... .....
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v 82 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAA 82 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHH
Confidence 468999999999999999999986 89999999865554333332222111110 0100000 00000
Q ss_pred ccccccCCcce--eccccccccccCC--------CCC---------CCCCC---CChhHHHHHHHHHHHHcCCceeEEec
Q 038157 100 SSLRTNLPREV--MGFTDYPFTARDD--------GSG---------DPRRF---PGHAEVLRYLEEFVSEFGIDEMVRFE 157 (207)
Q Consensus 100 ~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~---------~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~ 157 (207)
..+.+..+... +.-.+.+|..... ... ....+ .....+...|.+.+++.+++ ++.+
T Consensus 83 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~--i~~~ 160 (583)
T PRK08205 83 EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVE--FFNE 160 (583)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCE--EEeC
Confidence 10111111000 0000111111100 000 01111 12356788898888888888 9999
Q ss_pred eEEEEEEeec----CCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 158 SEVVNVGLME----NNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 158 ~~V~~l~~~~----~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
+.|+++..++ +...++.+.+..+++...+.|+.||+|||+++...
T Consensus 161 ~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~ 209 (583)
T PRK08205 161 FYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRVY 209 (583)
T ss_pred CEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccC
Confidence 9999998654 34566766443333345789999999999988543
No 96
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.56 E-value=5.5e-14 Score=114.14 Aligned_cols=162 Identities=22% Similarity=0.159 Sum_probs=92.0
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCccee------------cccccccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVI------------HTSLYSSL 102 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 102 (207)
.+||+|||+|.||+++|+.+++.|. |+|+||....+++.....+.........+..... .......+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 5799999999999999999999997 9999998766655444333221111111110000 00001111
Q ss_pred cccCCcc--eeccccccccccCC--------CCCC-CCC-C---CChhHHHHHHHHHHHH-cCCceeEEeceEEEEEEee
Q 038157 103 RTNLPRE--VMGFTDYPFTARDD--------GSGD-PRR-F---PGHAEVLRYLEEFVSE-FGIDEMVRFESEVVNVGLM 166 (207)
Q Consensus 103 ~~~~~~~--~~~~~~~~~~~~~~--------~~~~-~~~-~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~V~~l~~~ 166 (207)
....+.. ++.-.+.+|..... .... .+. + .....+...|.+.+++ .+++ ++.+++|+++..+
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIR--IIEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcE--EEECeEeeeeecc
Confidence 1100000 00000111211100 0000 011 1 1335778888888877 5888 9999999999876
Q ss_pred cCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 167 ENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 167 ~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
++...++.+.+.. +...+.++.||+|||+++..
T Consensus 159 ~g~v~Gv~~~~~~--~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 159 TGRVVGVWVWNRE--TVETCHADAVVLATGGAGKL 191 (488)
T ss_pred CCEEEEEEEEECC--cEEEEEcCEEEECCCcccCC
Confidence 5344556666532 23578999999999999874
No 97
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.56 E-value=1.8e-14 Score=114.13 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
.....+.+.|.+.+++.|++ ++++++|+++..++ +.+.|.+.+ ..+.||.||+|+|.|+.
T Consensus 146 vd~~~l~~aL~~~~~~~Gv~--i~~~~~V~~i~~~~-~~~~V~~~~------g~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 146 VDYRAVAEAMAELIQARGGE--IRLGAEVTALDEHA-NGVVVRTTQ------GEYEARTLINCAGLMSD 205 (393)
T ss_pred ECHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEecC-CeEEEEECC------CEEEeCEEEECCCcchH
Confidence 34568888899999888988 99999999998766 556666543 15899999999999984
No 98
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.56 E-value=4.2e-14 Score=116.20 Aligned_cols=164 Identities=19% Similarity=0.142 Sum_probs=91.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC-CCceeeeCCCCCCCcCCCCCCccee------------cccccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNR-IGGTWVYTPRVESDQLGVDPNRAVI------------HTSLYS 100 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 100 (207)
..+||+|||+|.||++||+.+ +.|.+|+|+||... .||+.....+......+..+..... ...+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 458999999999999999999 89999999999754 3444333322211111111111000 000111
Q ss_pred cccccCCcc--eeccccccccccCCC-----CCCCCC-----C---CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEe
Q 038157 101 SLRTNLPRE--VMGFTDYPFTARDDG-----SGDPRR-----F---PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGL 165 (207)
Q Consensus 101 ~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~-----~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~ 165 (207)
.+....+.. ++...+.++....+. ...... + .....+...|.+.+++.+++ +++++.++++..
T Consensus 85 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~t~v~~Li~ 162 (543)
T PRK06263 85 ILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIK--ILEEVMAIKLIV 162 (543)
T ss_pred HHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCE--EEeCeEeeeeEE
Confidence 111111100 000001111111000 000000 1 12356777888888888888 999999999987
Q ss_pred ecCC-cEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 166 MENN-KWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 166 ~~~~-~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
++++ ..++...+..+++...+.|+.||+|||+++.
T Consensus 163 ~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 163 DENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred eCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 7644 5666665522233467899999999999875
No 99
>PRK05868 hypothetical protein; Validated
Probab=99.56 E-value=3.5e-14 Score=111.61 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=83.5
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC---ceeeeCCCCC--CCcCCCCCCcceecccccccccccCCcce
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG---GTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLPREV 110 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
.||+|||||++|+++|+.|+++|++|+|+||.+.+. ......+... ...+++.+...... ........... ..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~-~~~~~~~~~~~-~g 79 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHK-TRIRGASFVDR-DG 79 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhc-cCccceEEEeC-CC
Confidence 489999999999999999999999999999986542 1222111111 11112111000000 00000000000 00
Q ss_pred eccccccccccCCCC-CCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeC
Q 038157 111 MGFTDYPFTARDDGS-GDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYD 189 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~ 189 (207)
............... ........+..+.+.|.+.+ ..+++ ++++++|++++.++ +.+.|++.+++ +++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~dg~-----~~~ad 150 (372)
T PRK05868 80 NELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVE--YLFDDSISTLQDDG-DSVRVTFERAA-----AREFD 150 (372)
T ss_pred CEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcE--EEeCCEEEEEEecC-CeEEEEECCCC-----eEEeC
Confidence 000000000000000 00011122445666554432 35677 99999999998765 67788887754 58899
Q ss_pred EEEEccCCCCCC
Q 038157 190 AVVVCNGHYTEP 201 (207)
Q Consensus 190 ~VV~AtG~~s~~ 201 (207)
.||.|||.+|.-
T Consensus 151 lvIgADG~~S~v 162 (372)
T PRK05868 151 LVIGADGLHSNV 162 (372)
T ss_pred EEEECCCCCchH
Confidence 999999999874
No 100
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.56 E-value=4.8e-14 Score=117.43 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=91.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC-ceeeeCCCCCCCcC---CCCCCccee------------ccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG-GTWVYTPRVESDQL---GVDPNRAVI------------HTS 97 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g-g~~~~~~~~~~~~~---~~~~~~~~~------------~~~ 97 (207)
.++||+|||+|.||++||+.+++.|.+|+|+||...++ ++.....+...... ...+....+ ...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~ 113 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREA 113 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCHH
Confidence 46899999999999999999999999999999865554 22222221111000 011111000 000
Q ss_pred ccccccccCCcc--eeccccccccccCC--------C-CCCCCC-C---CChhHH----HHHHHHHHHHcCCceeEEece
Q 038157 98 LYSSLRTNLPRE--VMGFTDYPFTARDD--------G-SGDPRR-F---PGHAEV----LRYLEEFVSEFGIDEMVRFES 158 (207)
Q Consensus 98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~-~~~~~~-~---~~~~~~----~~~l~~~~~~~~~~~~v~~~~ 158 (207)
....+....+.. ++.-.+.+|..... . ....+. + .....+ .+.|.+.+++.+++ +++++
T Consensus 114 lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~--i~~~t 191 (640)
T PRK07573 114 NVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVK--MYTRT 191 (640)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCE--EEece
Confidence 111111111100 00001112211000 0 000000 0 112223 25566677778888 99999
Q ss_pred EEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 159 EVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 159 ~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
.++++..+++.+.+|.+.+..+++...+.||.||+|||+++...
T Consensus 192 ~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~ 235 (640)
T PRK07573 192 EMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNVF 235 (640)
T ss_pred EEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccCC
Confidence 99999876545566777664333346789999999999988754
No 101
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.55 E-value=5.5e-14 Score=116.12 Aligned_cols=167 Identities=17% Similarity=0.125 Sum_probs=94.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCccee------------ccccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVI------------HTSLY 99 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 99 (207)
.++||+|||+|.||++||+.+++. |.+|+|+||....+++.....+......+..+....+ .....
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 82 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV 82 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 358999999999999999999987 4799999998776665554444332222211111000 00011
Q ss_pred ccccccCCcce--eccccccccccCC--------C-CCCCC-CC---CChhHHHHHHHHHHHHc-CCceeEEeceEEEEE
Q 038157 100 SSLRTNLPREV--MGFTDYPFTARDD--------G-SGDPR-RF---PGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNV 163 (207)
Q Consensus 100 ~~~~~~~~~~~--~~~~~~~~~~~~~--------~-~~~~~-~~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l 163 (207)
..+..+.+... +.-.+.+|....+ . ....+ .+ .....+...|.+.+.+. +++ ++.++.++++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~L 160 (582)
T PRK09231 83 EYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQ--RFDEHFVLDI 160 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcE--EEeCeEEEEE
Confidence 11111111100 0001122211100 0 00001 11 12346777777776664 677 8999999999
Q ss_pred EeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 164 GLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 164 ~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
..+++...++...+..+++...+.|+.||+|||+++...
T Consensus 161 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 161 LVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred EEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 987644455655443333346789999999999998653
No 102
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.55 E-value=6.5e-14 Score=113.13 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=53.4
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
.....+...|.+.+++.|++ ++++++|+++..++++.|.+++.+..+++...+.||+||+|+|+|+..+
T Consensus 175 Vdp~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~L 243 (483)
T TIGR01320 175 VDFGALTKQLLGYLVQNGTT--IRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPL 243 (483)
T ss_pred ECHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHH
Confidence 45568888888888888988 9999999999886545687776543322234689999999999998654
No 103
>PLN02697 lycopene epsilon cyclase
Probab=99.55 E-value=9.8e-14 Score=112.62 Aligned_cols=143 Identities=16% Similarity=0.126 Sum_probs=84.7
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
...+||+|||||++|+++|+.|++.|++|+|||+......++..... ....++..+ .....|.... ..
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~-~l~~lgl~~----~i~~~w~~~~-------v~ 173 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWED-EFKDLGLED----CIEHVWRDTI-------VY 173 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchh-HHHhcCcHH----HHHhhcCCcE-------EE
Confidence 34699999999999999999999999999999986433222111000 000000000 0000011000 00
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEE-EEEecCCCceeEEEeCEE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKV-KSKLRNGDGDCDEIYDAV 191 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v-~~~~~~~~~~~~i~a~~V 191 (207)
..+.... ..........+..+.+.|.+.+.+.+++ + .+++|+++..++ +.+.+ .+.++ .++.|+.|
T Consensus 174 ~~~~~~~----~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~--~-~~~~V~~I~~~~-~~~~vv~~~dG-----~~i~A~lV 240 (529)
T PLN02697 174 LDDDKPI----MIGRAYGRVSRTLLHEELLRRCVESGVS--Y-LSSKVDRITEAS-DGLRLVACEDG-----RVIPCRLA 240 (529)
T ss_pred ecCCcee----eccCcccEEcHHHHHHHHHHHHHhcCCE--E-EeeEEEEEEEcC-CcEEEEEEcCC-----cEEECCEE
Confidence 0000000 0001111256778889999999888886 5 788999998776 44543 33332 36999999
Q ss_pred EEccCCCCC
Q 038157 192 VVCNGHYTE 200 (207)
Q Consensus 192 V~AtG~~s~ 200 (207)
|+|+|.+|.
T Consensus 241 I~AdG~~S~ 249 (529)
T PLN02697 241 TVASGAASG 249 (529)
T ss_pred EECCCcChh
Confidence 999999994
No 104
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.55 E-value=6.5e-14 Score=99.00 Aligned_cols=144 Identities=24% Similarity=0.215 Sum_probs=80.5
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
-.++||+|||+|++|+++|+.|+++|.||+++|+...+||..-..... -....+......-+ .
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~l--------f~~iVVq~~a~~iL---------~ 77 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGML--------FNKIVVQEEADEIL---------D 77 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT-----------EEEETTTHHHH---------H
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccc--------cchhhhhhhHHHHH---------H
Confidence 356999999999999999999999999999999988777543211110 00111111111111 0
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecC-CcEEEEEEec----C--CCceeE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN-NKWKVKSKLR----N--GDGDCD 185 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~-~~~~v~~~~~----~--~~~~~~ 185 (207)
-.+.++... ...-.......+...|...+-+.|.+ ++..+.|.++...++ ...+|.+.-. . .-.--.
T Consensus 78 elgi~y~~~----~~g~~v~d~~~~~s~L~s~a~~aGak--ifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~ 151 (230)
T PF01946_consen 78 ELGIPYEEY----GDGYYVADSVEFTSTLASKAIDAGAK--IFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLT 151 (230)
T ss_dssp HHT---EE-----SSEEEES-HHHHHHHHHHHHHTTTEE--EEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EE
T ss_pred hCCceeEEe----CCeEEEEcHHHHHHHHHHHHhcCCCE--EEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcce
Confidence 111222211 01111234457777777777778888 999999999998773 3344555321 1 111357
Q ss_pred EEeCEEEEccCCCC
Q 038157 186 EIYDAVVVCNGHYT 199 (207)
Q Consensus 186 i~a~~VV~AtG~~s 199 (207)
++|+.||.|||+-+
T Consensus 152 i~ak~ViDaTGHda 165 (230)
T PF01946_consen 152 IRAKVVIDATGHDA 165 (230)
T ss_dssp EEESEEEE---SSS
T ss_pred EEEeEEEeCCCCch
Confidence 99999999999654
No 105
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.2e-13 Score=97.42 Aligned_cols=142 Identities=22% Similarity=0.175 Sum_probs=87.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
...||+|||+|++|+++|+.|+++|.||+|+||+-.+||..-..+.. -.+..+......-+ .-
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGml--------f~~iVv~~~a~~iL---------~e 91 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGML--------FNKIVVREEADEIL---------DE 91 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccc--------cceeeecchHHHHH---------HH
Confidence 45799999999999999999999999999999998886653211110 00011111111111 11
Q ss_pred ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecC-CcEEEEEEe------cCCCceeEE
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN-NKWKVKSKL------RNGDGDCDE 186 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~-~~~~v~~~~------~~~~~~~~i 186 (207)
.+.++... ...........+..-|...+-+.|.. ++....|.++...++ ++.+|.+.= +---.--.+
T Consensus 92 ~gI~ye~~----e~g~~v~ds~e~~skl~~~a~~aGak--i~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i 165 (262)
T COG1635 92 FGIRYEEE----EDGYYVADSAEFASKLAARALDAGAK--IFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTI 165 (262)
T ss_pred hCCcceec----CCceEEecHHHHHHHHHHHHHhcCce--eeecceEEEEEEecCCceEEEEEecchhhhcccccCccee
Confidence 11222222 01111233456777777777788888 999999999998875 344444421 110012478
Q ss_pred EeCEEEEccCCC
Q 038157 187 IYDAVVVCNGHY 198 (207)
Q Consensus 187 ~a~~VV~AtG~~ 198 (207)
+|++||.|||+-
T Consensus 166 ~a~~VvDaTGHd 177 (262)
T COG1635 166 RAKAVVDATGHD 177 (262)
T ss_pred eEEEEEeCCCCc
Confidence 999999999964
No 106
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.55 E-value=1.8e-13 Score=111.79 Aligned_cols=120 Identities=22% Similarity=0.284 Sum_probs=85.9
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
...+||+|||||++|+++|..|++.|.+|+|+|. .+||.+.....
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~--------------------------------- 254 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVG--------------------------------- 254 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcC---------------------------------
Confidence 4569999999999999999999999999999975 35555431000
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVV 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV 192 (207)
+.++. ...+.....+.+.+.+.+++.+++ ++.+++|+++..++ +.+.+++.++ ..+.+|.+|
T Consensus 255 ~~~~~----------~~~~~~~~~l~~~l~~~l~~~gv~--i~~~~~V~~I~~~~-~~~~v~~~~g-----~~i~~d~lI 316 (515)
T TIGR03140 255 IENLI----------SVPYTTGSQLAANLEEHIKQYPID--LMENQRAKKIETED-GLIVVTLESG-----EVLKAKSVI 316 (515)
T ss_pred ccccc----------ccCCCCHHHHHHHHHHHHHHhCCe--EEcCCEEEEEEecC-CeEEEEECCC-----CEEEeCEEE
Confidence 00000 000123457788888888888888 89999999998765 5677776543 268999999
Q ss_pred EccCCCCCCCCCCCC
Q 038157 193 VCNGHYTEPRIAEIP 207 (207)
Q Consensus 193 ~AtG~~s~~~~p~~~ 207 (207)
+|+|. .+..|++|
T Consensus 317 lAtGa--~~~~~~ip 329 (515)
T TIGR03140 317 VATGA--RWRKLGVP 329 (515)
T ss_pred ECCCC--CcCCCCCC
Confidence 99995 45555543
No 107
>PTZ00058 glutathione reductase; Provisional
Probab=99.55 E-value=2.7e-14 Score=116.90 Aligned_cols=54 Identities=35% Similarity=0.612 Sum_probs=44.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH 95 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 95 (207)
..+|||+|||||++|..+|..+++.|.+|+|||+. .+||.|. ..||.|.+..+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl--------n~GCiPsK~l~~ 99 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV--------NVGCVPKKIMFN 99 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc--------ccCCCCCchhhh
Confidence 35799999999999999999999999999999996 5777765 446667665443
No 108
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.4e-13 Score=103.20 Aligned_cols=114 Identities=30% Similarity=0.383 Sum_probs=77.8
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCe-EEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHK-VVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~-v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
..+||+||||||+|++||+.+++.+.+ ++|+|+. .+|+...... .
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~~~~~---------------------------------~ 47 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQLTKTT---------------------------------D 47 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCccccce---------------------------------e
Confidence 468999999999999999999999998 6666664 4443222110 0
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVV 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV 192 (207)
..+++-. ..-.....+.+.+.+.++..+.+ +.. .+|..+.... +.+.|++.++ +++||.||
T Consensus 48 venypg~---------~~~~~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~-~~F~v~t~~~------~~~ak~vI 108 (305)
T COG0492 48 VENYPGF---------PGGILGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEG-GPFKVKTDKG------TYEAKAVI 108 (305)
T ss_pred ecCCCCC---------ccCCchHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecC-ceEEEEECCC------eEEEeEEE
Confidence 1111111 11123458888888888888886 444 7777777765 3788888763 39999999
Q ss_pred EccCCCCC
Q 038157 193 VCNGHYTE 200 (207)
Q Consensus 193 ~AtG~~s~ 200 (207)
+|||...+
T Consensus 109 iAtG~~~~ 116 (305)
T COG0492 109 IATGAGAR 116 (305)
T ss_pred ECcCCccc
Confidence 99995444
No 109
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.55 E-value=5.7e-14 Score=117.22 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
..+...|.+.+.+.+++ ++.++.++++..+++.+.++.+.+..+++...+.|+.||+|||+++...
T Consensus 158 ~~l~~~L~~~~~~~gv~--i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y 223 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVP--VHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRIY 223 (657)
T ss_pred HHHHHHHHHHHHhCCCE--EEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCC
Confidence 35666777888888888 9999999999987645567777654334356788999999999988654
No 110
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.55 E-value=8.1e-14 Score=117.08 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=49.7
Q ss_pred CCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCC
Q 038157 131 FPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
+.....+...|.+.+++ |++ ++++++|+++..++ +.|.|.+.++ ..+.||.||+|+|.|+..+.
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~--i~~~~~V~~i~~~~-~~~~v~t~~g-----~~~~ad~VV~A~G~~s~~l~ 467 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLT--IHFGHEVARLERED-DGWQLDFAGG-----TLASAPVVVLANGHDAARFA 467 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcE--EEeCCEeeEEEEeC-CEEEEEECCC-----cEEECCEEEECCCCCccccc
Confidence 34556788888888877 888 89999999998876 6677765442 35689999999999987554
No 111
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.55 E-value=1.9e-13 Score=108.94 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 133 GHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
....+...|.+.+++.|++ ++.+++|+++..++ +.+.+.+.++.+.+...+.||.||+|+|.|+..
T Consensus 195 ~~~~~~~~l~~~a~~~G~~--i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~ 260 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQ--FRYGQEVTSIKTDG-GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRA 260 (410)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCCCccceEecCEEEECCCcChHH
Confidence 3346677788888889998 99999999998766 667776655322111368999999999999753
No 112
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.54 E-value=9.4e-14 Score=109.92 Aligned_cols=141 Identities=21% Similarity=0.174 Sum_probs=84.9
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccccc
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDY 116 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (207)
||+|||||++|+++|+.|++.|++|+|||+.+..++.....- +........ ...+....-.....+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~~~-- 67 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGV------WDDDLSDLG-----LADCVEHVWPDVYEYR-- 67 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccc------cHhhhhhhc-----hhhHHhhcCCCceEEe--
Confidence 899999999999999999999999999999866554321100 000000000 0000000000000000
Q ss_pred cccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccC
Q 038157 117 PFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNG 196 (207)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG 196 (207)
+...............+..+.+.|.+.+.+.+++ + ..++|+++..++++.+.|++.++ ..+.|+.||+|+|
T Consensus 68 -~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~--~-~~~~v~~i~~~~~~~~~v~~~~g-----~~~~a~~VI~A~G 138 (388)
T TIGR01790 68 -FPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVL--W-LERKAIHAEADGVALSTVYCAGG-----QRIQARLVIDARG 138 (388)
T ss_pred -cCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcE--E-EccEEEEEEecCCceeEEEeCCC-----CEEEeCEEEECCC
Confidence 0000000011111256678889999999888875 5 46789998877446777877653 3689999999999
Q ss_pred CCC
Q 038157 197 HYT 199 (207)
Q Consensus 197 ~~s 199 (207)
.+|
T Consensus 139 ~~s 141 (388)
T TIGR01790 139 FGP 141 (388)
T ss_pred Cch
Confidence 988
No 113
>PLN02463 lycopene beta cyclase
Probab=99.54 E-value=1.1e-13 Score=110.55 Aligned_cols=144 Identities=20% Similarity=0.219 Sum_probs=86.5
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec-ccccccccccCCccee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH-TSLYSSLRTNLPREVM 111 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 111 (207)
...+||+|||||++|+++|+.|++.|++|+|+|+.+.. .|..+ ++.... .+. ..+...+.........
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~--~~p~~-------~g~w~~--~l~~lgl~~~l~~~w~~~~v 94 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS--IWPNN-------YGVWVD--EFEALGLLDCLDTTWPGAVV 94 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccc--hhccc-------cchHHH--HHHHCCcHHHHHhhCCCcEE
Confidence 44689999999999999999999999999999996532 11100 000000 000 0000000000000000
Q ss_pred ccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEE
Q 038157 112 GFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAV 191 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~V 191 (207)
...+... . ..........+..+.+.|.+.+.+.+++ + ..++|++++..+ +.+.|++.++ .++.|+.|
T Consensus 95 ~~~~~~~--~--~~~~~y~~V~R~~L~~~Ll~~~~~~GV~--~-~~~~V~~I~~~~-~~~~V~~~dG-----~~i~A~lV 161 (447)
T PLN02463 95 YIDDGKK--K--DLDRPYGRVNRKKLKSKMLERCIANGVQ--F-HQAKVKKVVHEE-SKSLVVCDDG-----VKIQASLV 161 (447)
T ss_pred EEeCCCC--c--cccCcceeEEHHHHHHHHHHHHhhcCCE--E-EeeEEEEEEEcC-CeEEEEECCC-----CEEEcCEE
Confidence 0000000 0 0011122346778889999988888876 5 467999998876 6678887764 36999999
Q ss_pred EEccCCCCC
Q 038157 192 VVCNGHYTE 200 (207)
Q Consensus 192 V~AtG~~s~ 200 (207)
|+|+|..|.
T Consensus 162 I~AdG~~s~ 170 (447)
T PLN02463 162 LDATGFSRC 170 (447)
T ss_pred EECcCCCcC
Confidence 999998775
No 114
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.54 E-value=7.1e-14 Score=113.04 Aligned_cols=42 Identities=33% Similarity=0.493 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
.+|||+|||||++|+.+|..|++.|.+|+|+|+.+.+||.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 469999999999999999999999999999999767787764
No 115
>PRK06370 mercuric reductase; Validated
Probab=99.54 E-value=7.6e-14 Score=112.82 Aligned_cols=42 Identities=40% Similarity=0.537 Sum_probs=37.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
+.+|||+|||||++|+.+|+.|++.|.+|+|+|+. .+||.|.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 34699999999999999999999999999999996 5677765
No 116
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.53 E-value=2e-13 Score=110.55 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=52.2
Q ss_pred CChhHHHHHHHHHHHHcC-CceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFG-IDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~-~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
.....+.+.|.+.+++.+ ++ ++++++|+++..++++.|.+++.+..+++...+.|++||+|+|+|+..+
T Consensus 180 Vd~~~l~~aL~~~a~~~Ggv~--i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L 249 (494)
T PRK05257 180 VNFGALTRQLVGYLQKQGNFE--LQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPL 249 (494)
T ss_pred ECHHHHHHHHHHHHHhCCCeE--EEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHH
Confidence 344578888888888876 67 9999999999986645688877642222123689999999999998654
No 117
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.53 E-value=3.1e-14 Score=113.15 Aligned_cols=146 Identities=25% Similarity=0.351 Sum_probs=89.0
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceeccccc-ccccccCCccee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLY-SSLRTNLPREVM 111 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 111 (207)
+.+||++|||+|++|..+|..+++.|.+|+++|+....||.|. ..||-|.+..+..... ..+.......+.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCl--------n~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi 73 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCL--------NVGCIPSKALLHAAEVIEEARHAAKEYGI 73 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEE--------eeCccccHHHHHHHHHHHHHhhcccccce
Confidence 3479999999999999999999999999999999877888876 5688888876655332 222221111111
Q ss_pred ccccccccccCCCCCCCCCCC----ChhHHHHHHHHHHHHcCCceeEEeceE-EEEEEeecCCcEEEEEEecCCCceeEE
Q 038157 112 GFTDYPFTARDDGSGDPRRFP----GHAEVLRYLEEFVSEFGIDEMVRFESE-VVNVGLMENNKWKVKSKLRNGDGDCDE 186 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~v~~~~~-V~~l~~~~~~~~~v~~~~~~~~~~~~i 186 (207)
......+. +..... -...+...++.+.++.+++ ++.++- ..+ + + .|.+... +.+++
T Consensus 74 ~~~~~~id-------~~~~~~~k~~v~~~~~~~~~~l~~~~~V~--vi~G~a~f~~----~-~--~v~V~~~---~~~~~ 134 (454)
T COG1249 74 SAEVPKID-------FEKLLARKDKVVRLLTGGVEGLLKKNGVD--VIRGEARFVD----P-H--TVEVTGE---DKETI 134 (454)
T ss_pred ecCCCCcC-------HHHHHHHHHHHHHHHhhhHHHHHhhCCCE--EEEEEEEECC----C-C--EEEEcCC---CceEE
Confidence 11100000 000000 0123344555666666776 555332 221 1 3 3444433 13689
Q ss_pred EeCEEEEccCCCCCCCCCCCC
Q 038157 187 IYDAVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 187 ~a~~VV~AtG~~s~~~~p~~~ 207 (207)
+++++|+||| |+|..|++|
T Consensus 135 ~a~~iiIATG--S~p~~~~~~ 153 (454)
T COG1249 135 TADNIIIATG--SRPRIPPGP 153 (454)
T ss_pred EeCEEEEcCC--CCCcCCCCC
Confidence 9999999999 999888653
No 118
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.53 E-value=1.1e-13 Score=110.71 Aligned_cols=161 Identities=16% Similarity=0.095 Sum_probs=87.5
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec------------cccccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH------------TSLYSS 101 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 101 (207)
.++||+|||+|.||++||+.++ .|.+|+|+||....+++.....+........+ ...... ......
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d-~~~~~~~d~~~~g~~~~d~~lv~~ 80 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKD-DITSFVEDTLKAGQYENNLEAVKI 80 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCC-CHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4689999999999999999985 69999999998877665443333221111111 000000 000000
Q ss_pred ccccCCcc--eecccccccccc-------CCCCC-CCCC-C---CChhHHHHHHHHHHHH-cCCceeEEeceEEEEEEee
Q 038157 102 LRTNLPRE--VMGFTDYPFTAR-------DDGSG-DPRR-F---PGHAEVLRYLEEFVSE-FGIDEMVRFESEVVNVGLM 166 (207)
Q Consensus 102 ~~~~~~~~--~~~~~~~~~~~~-------~~~~~-~~~~-~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~V~~l~~~ 166 (207)
+....+.. ++.-.+.++... ..... ..+. + .....+.+.|.+.+++ .+++ ++++++|++|..+
T Consensus 81 ~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~--i~~~t~v~~Li~~ 158 (433)
T PRK06175 81 LANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNIT--IIENCYLVDIIEN 158 (433)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCE--EEECcEeeeeEec
Confidence 10000000 000000111100 00000 0011 1 1234567777777764 4888 9999999999876
Q ss_pred cCCcEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 167 ENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 167 ~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
++..++|...+.. +...+.|+.||+|||+++.
T Consensus 159 ~~~v~Gv~~~~~g--~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 159 DNTCIGAICLKDN--KQINIYSKVTILATGGIGG 190 (433)
T ss_pred CCEEEEEEEEECC--cEEEEEcCeEEEccCcccc
Confidence 5345555543322 1346899999999999765
No 119
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.53 E-value=1.5e-13 Score=111.14 Aligned_cols=44 Identities=32% Similarity=0.524 Sum_probs=39.7
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVY 76 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~ 76 (207)
+.+|||+|||||++|+.+|+.|++.|.+|+|+|+.+.+||.|..
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 34699999999999999999999999999999998788888753
No 120
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.53 E-value=6.6e-14 Score=109.94 Aligned_cols=60 Identities=23% Similarity=0.367 Sum_probs=44.4
Q ss_pred CChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRIA 204 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~p 204 (207)
.....+...|.+.+.+. |++ ++.+++|+++.. + .|.+.++ .+.||.||+|+|+|+..+.|
T Consensus 142 v~p~~~~~~l~~~~~~~~Gv~--i~~~t~V~~i~~---~--~v~t~~g------~i~a~~VV~A~G~~s~~l~~ 202 (365)
T TIGR03364 142 VEPREAIPALAAYLAEQHGVE--FHWNTAVTSVET---G--TVRTSRG------DVHADQVFVCPGADFETLFP 202 (365)
T ss_pred ECHHHHHHHHHHHHHhcCCCE--EEeCCeEEEEec---C--eEEeCCC------cEEeCEEEECCCCChhhhCc
Confidence 45567777787777664 888 889999999853 2 4555442 36899999999999876654
No 121
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.53 E-value=1.9e-13 Score=112.14 Aligned_cols=167 Identities=20% Similarity=0.151 Sum_probs=94.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCccee------------cccccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVI------------HTSLYS 100 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 100 (207)
..++||+|||+|.||+++|+.+++. .+|+|+||....+++..++.+.........+..... ...+..
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 84 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVR 84 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHH
Confidence 3468999999999999999999986 899999998776665444443222111111111000 000111
Q ss_pred cccccCCcc--eeccccccccccC------------CCCCCCC--CCC---ChhHHHHHHHHHHHHc-CCceeEEeceEE
Q 038157 101 SLRTNLPRE--VMGFTDYPFTARD------------DGSGDPR--RFP---GHAEVLRYLEEFVSEF-GIDEMVRFESEV 160 (207)
Q Consensus 101 ~~~~~~~~~--~~~~~~~~~~~~~------------~~~~~~~--~~~---~~~~~~~~l~~~~~~~-~~~~~v~~~~~V 160 (207)
.+.+..+.. ++.-.+.+|.... ....... .+. ....+...|.+.+++. +++ ++.++.+
T Consensus 85 ~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~--v~~~~~v 162 (536)
T PRK09077 85 FIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNIT--VLERHNA 162 (536)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcE--EEeeEEe
Confidence 111111000 0000011111100 0000000 011 2346777777777654 788 9999999
Q ss_pred EEEEeec------CCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 161 VNVGLME------NNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 161 ~~l~~~~------~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
+++..++ +...+|.+.+..+++...+.|+.||+|||+++...
T Consensus 163 ~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~ 210 (536)
T PRK09077 163 IDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVY 210 (536)
T ss_pred eeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCC
Confidence 9998653 24566777654444456789999999999988643
No 122
>PRK08275 putative oxidoreductase; Provisional
Probab=99.53 E-value=1.6e-13 Score=113.03 Aligned_cols=166 Identities=13% Similarity=0.048 Sum_probs=90.3
Q ss_pred CcccEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCCCCc-eeeeCCCCCCCcCCC-CCCccee------------ccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNRIGG-TWVYTPRVESDQLGV-DPNRAVI------------HTS 97 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~~gg-~~~~~~~~~~~~~~~-~~~~~~~------------~~~ 97 (207)
..+||+|||+|.||++||+.+++. |.+|+|+||....++ ............... ....... ...
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 468999999999999999999986 689999999865322 211111111000000 0000000 001
Q ss_pred ccccccccCCcc--eeccccccccccCCC------CC-CCC---CCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEe
Q 038157 98 LYSSLRTNLPRE--VMGFTDYPFTARDDG------SG-DPR---RFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGL 165 (207)
Q Consensus 98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~-~~~---~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~ 165 (207)
....+....+.. ++...+.++...... .. ... .......+.+.|.+.+++.+++ +++++.|+++..
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~ 165 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVL--ITNRIMATRLLT 165 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCE--EEcceEEEEEEE
Confidence 111111100000 000001111110000 00 000 0113457888899988888888 999999999987
Q ss_pred e-cCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 166 M-ENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 166 ~-~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
+ ++...++.+.+..+++...+.|+.||+|||+++..
T Consensus 166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 6 42345666544333324578999999999998754
No 123
>PRK14727 putative mercuric reductase; Provisional
Probab=99.53 E-value=1.8e-13 Score=110.96 Aligned_cols=44 Identities=34% Similarity=0.574 Sum_probs=40.4
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVY 76 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~ 76 (207)
+.++|++|||+|++|+.+|..|++.|.+|+++|+...+||.|..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 35699999999999999999999999999999998788999873
No 124
>PLN02507 glutathione reductase
Probab=99.53 E-value=1.2e-13 Score=112.35 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=82.5
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeC---------CCCCceeeeCCCCCCCcCCCCCCcceeccccc-ccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKS---------NRIGGTWVYTPRVESDQLGVDPNRAVIHTSLY-SSL 102 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~---------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 102 (207)
..+||++|||+|++|+.+|..+++.|.+|+|+|+. ..+||.|. ..+|-|.+..+..... ..+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~--------n~GciPsK~l~~~a~~~~~~ 94 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV--------IRGCVPKKILVYGATFGGEF 94 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee--------ccCchhHHHHHHHHHHHHHH
Confidence 44699999999999999999999999999999962 34676665 3466666554433211 111
Q ss_pred cccCCcceeccccccccccCCCCCCCCCCC----ChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEec
Q 038157 103 RTNLPREVMGFTDYPFTARDDGSGDPRRFP----GHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLR 178 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~ 178 (207)
.. ............ .......+. ....+...+...++..+++ ++. .++..+.. +.+.|+..++
T Consensus 95 ~~-~~~~G~~~~~~~------~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~i~-g~a~~vd~---~~v~V~~~~g 161 (499)
T PLN02507 95 ED-AKNYGWEINEKV------DFNWKKLLQKKTDEILRLNGIYKRLLANAGVK--LYE-GEGKIVGP---NEVEVTQLDG 161 (499)
T ss_pred HH-HHhcCcccCCCC------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEE-EEEEEecC---CEEEEEeCCC
Confidence 11 000000000000 000000000 0012333444555556665 443 34444432 3456665443
Q ss_pred CCCceeEEEeCEEEEccCCCCCCCCCCCC
Q 038157 179 NGDGDCDEIYDAVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 179 ~~~~~~~i~a~~VV~AtG~~s~~~~p~~~ 207 (207)
. ...+.+|+||+||| +.+..|.+|
T Consensus 162 ~---~~~~~~d~LIIATG--s~p~~p~ip 185 (499)
T PLN02507 162 T---KLRYTAKHILIATG--SRAQRPNIP 185 (499)
T ss_pred c---EEEEEcCEEEEecC--CCCCCCCCC
Confidence 2 24689999999999 777766654
No 125
>PRK06116 glutathione reductase; Validated
Probab=99.52 E-value=6.3e-14 Score=112.90 Aligned_cols=142 Identities=21% Similarity=0.339 Sum_probs=79.7
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccc-cccccCCcceec
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYS-SLRTNLPREVMG 112 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 112 (207)
.+|||+|||||++|+.+|+.|+++|.+|+|+|+. ..||.+. ..+|.|.+......... .+......
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~--------n~gciP~k~l~~~~~~~~~~~~~~~~---- 69 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV--------NVGCVPKKLMWYGAQIAEAFHDYAPG---- 69 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh--------ccCcchHHHHHHHHHHHHHHHhHHHh----
Confidence 4699999999999999999999999999999996 6777764 24555554333222111 11110000
Q ss_pred cccccccccCCCCCCCCCCCC----hhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEe
Q 038157 113 FTDYPFTARDDGSGDPRRFPG----HAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIY 188 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a 188 (207)
+.+........+...... ...+.+.+.+.+++.+++ ++.+ +++.+. . . .|++ ++ ..+.+
T Consensus 70 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~v~--~-~--~v~~-~g-----~~~~~ 132 (450)
T PRK06116 70 ---YGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVD--LIEG-FARFVD--A-H--TVEV-NG-----ERYTA 132 (450)
T ss_pred ---cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc--C-C--EEEE-CC-----EEEEe
Confidence 000000000000000000 012333444555666776 6555 344432 2 2 4555 31 36899
Q ss_pred CEEEEccCCCCCCCCCCCC
Q 038157 189 DAVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 189 ~~VV~AtG~~s~~~~p~~~ 207 (207)
|+||+||| +.+..|++|
T Consensus 133 d~lViATG--s~p~~p~i~ 149 (450)
T PRK06116 133 DHILIATG--GRPSIPDIP 149 (450)
T ss_pred CEEEEecC--CCCCCCCCC
Confidence 99999999 777777664
No 126
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.52 E-value=1.3e-13 Score=110.83 Aligned_cols=140 Identities=21% Similarity=0.347 Sum_probs=80.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceeccc-ccccccccCCcceecc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTS-LYSSLRTNLPREVMGF 113 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 113 (207)
+|||+|||||++|+.+|+.|++.|.+|+|+||. .+||.|.. .+|.|.+...... ....+.. ...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~--------~gciPsk~l~~~a~~~~~~~~-~~~----- 66 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN--------VGCVPKKVMWYASDLAERMHD-AAD----- 66 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec--------cCcCccHHHHHHHHHHHHHhH-Hhh-----
Confidence 589999999999999999999999999999995 57887763 3555554322221 1111110 000
Q ss_pred ccccccccCC-CCCCCCCCCCh----hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEe
Q 038157 114 TDYPFTARDD-GSGDPRRFPGH----AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIY 188 (207)
Q Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a 188 (207)
+.+..... ...+....... ..+.+.+...+++.+++ ++.++.+. .++ + .|.+ + ...+.+
T Consensus 67 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~---~~~-~--~v~v-~-----~~~~~~ 130 (450)
T TIGR01421 67 --YGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVD--VIFGHARF---TKD-G--TVEV-N-----GRDYTA 130 (450)
T ss_pred --cCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE---ccC-C--EEEE-C-----CEEEEe
Confidence 10000000 00000000000 12334455666677887 77776542 122 3 2433 2 135899
Q ss_pred CEEEEccCCCCCCCCC-CCC
Q 038157 189 DAVVVCNGHYTEPRIA-EIP 207 (207)
Q Consensus 189 ~~VV~AtG~~s~~~~p-~~~ 207 (207)
|+||+||| |.|..| ++|
T Consensus 131 d~vIiAtG--s~p~~p~~i~ 148 (450)
T TIGR01421 131 PHILIATG--GKPSFPENIP 148 (450)
T ss_pred CEEEEecC--CCCCCCCCCC
Confidence 99999999 777777 654
No 127
>PRK10262 thioredoxin reductase; Provisional
Probab=99.52 E-value=7.2e-13 Score=102.33 Aligned_cols=119 Identities=18% Similarity=0.354 Sum_probs=80.5
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
..+||+|||||++|+++|..|+++|.++++||+. ..||.+..... .
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~---------------------------------~ 50 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE---------------------------------V 50 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCce---------------------------------E
Confidence 4689999999999999999999999999999964 45655432110 0
Q ss_pred ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
.+++.. ........+.+.+.+.+...+.+ ++.+ +|+.+...+ +.|.++... ..+.+|.||+
T Consensus 51 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~v~~~~-~~~~v~~~~------~~~~~d~vil 111 (321)
T PRK10262 51 ENWPGD---------PNDLTGPLLMERMHEHATKFETE--IIFD-HINKVDLQN-RPFRLTGDS------GEYTCDALII 111 (321)
T ss_pred CCCCCC---------CCCCCHHHHHHHHHHHHHHCCCE--EEee-EEEEEEecC-CeEEEEecC------CEEEECEEEE
Confidence 001100 01123346777888888877765 5554 577777665 666665432 2589999999
Q ss_pred ccCCCCCCCCCCCC
Q 038157 194 CNGHYTEPRIAEIP 207 (207)
Q Consensus 194 AtG~~s~~~~p~~~ 207 (207)
||| +.+..|++|
T Consensus 112 AtG--~~~~~~~i~ 123 (321)
T PRK10262 112 ATG--ASARYLGLP 123 (321)
T ss_pred CCC--CCCCCCCCC
Confidence 999 556666654
No 128
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.52 E-value=1.6e-13 Score=110.95 Aligned_cols=42 Identities=43% Similarity=0.613 Sum_probs=38.1
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVY 76 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~ 76 (207)
..|||+|||||++|+++|..|+++|.+|+|+|+.. .||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 46999999999999999999999999999999976 7887763
No 129
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.51 E-value=1.5e-13 Score=109.66 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=83.7
Q ss_pred cEEEECCChhHHHHHHHHHHCC-CeEEEEeeCCCC---CceeeeCCCCC--CCcCCCCCCcceecccccccccccCCcce
Q 038157 37 NVAVIGAGAAGLVAARELRREG-HKVVVLEKSNRI---GGTWVYTPRVE--SDQLGVDPNRAVIHTSLYSSLRTNLPREV 110 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g-~~v~liE~~~~~---gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
+|+|||||++|+++|+.|++.| ++|+|+||.+.+ |......++.. ...+++.+............. ....
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~----~~~~ 77 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPW----QDIW 77 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccC----ccee
Confidence 6999999999999999999998 699999998654 33333333211 111222111100000000000 0000
Q ss_pred ecccc---ccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEE
Q 038157 111 MGFTD---YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEI 187 (207)
Q Consensus 111 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~ 187 (207)
..+.+ ..+...............+..+.+.|.+.+.. .. ++++++|+++..++ +.|.|++.++. ++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~--v~~~~~v~~i~~~~-~~~~v~~~~g~-----~~~ 147 (414)
T TIGR03219 78 FEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--GI--ASFGKRATQIEEQA-EEVQVLFTDGT-----EYR 147 (414)
T ss_pred EEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--ce--EEcCCEEEEEEecC-CcEEEEEcCCC-----EEE
Confidence 00000 00000000000111124456677777665532 34 78999999998876 66888887643 689
Q ss_pred eCEEEEccCCCCC
Q 038157 188 YDAVVVCNGHYTE 200 (207)
Q Consensus 188 a~~VV~AtG~~s~ 200 (207)
+|.||+|||.+|.
T Consensus 148 ad~vVgADG~~S~ 160 (414)
T TIGR03219 148 CDLLIGADGIKSA 160 (414)
T ss_pred eeEEEECCCccHH
Confidence 9999999999986
No 130
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.51 E-value=8.4e-14 Score=101.02 Aligned_cols=151 Identities=23% Similarity=0.355 Sum_probs=88.7
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCccee--cc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVM--GF 113 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 113 (207)
.+|+|||+|++|+++|..|++.|++|+++||+..+||.........+. +.....+.......+-.+.+...++.. .+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~-~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGR-FDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCcc-ccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 479999999999999999999999999999999999887633221111 222222222222222222221111110 11
Q ss_pred cc--ccccccCC-CCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCE
Q 038157 114 TD--YPFTARDD-GSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDA 190 (207)
Q Consensus 114 ~~--~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~ 190 (207)
.. +.+..... .......|.....+...-+.++ ...+ +.++++|+.+...+ +.|.++..++. ....+|.
T Consensus 81 ~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA--tdL~--V~~~~rVt~v~~~~-~~W~l~~~~g~----~~~~~d~ 151 (331)
T COG3380 81 TPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA--TDLT--VVLETRVTEVARTD-NDWTLHTDDGT----RHTQFDD 151 (331)
T ss_pred cccccccccCCCCCCCCCCccccCcchHHHHHHHh--ccch--hhhhhhhhhheecC-CeeEEEecCCC----cccccce
Confidence 01 11111100 1112222444444444333222 3355 89999999999986 89999998766 3478999
Q ss_pred EEEccC
Q 038157 191 VVVCNG 196 (207)
Q Consensus 191 VV~AtG 196 (207)
||+|--
T Consensus 152 vvla~P 157 (331)
T COG3380 152 VVLAIP 157 (331)
T ss_pred EEEecC
Confidence 999864
No 131
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.50 E-value=3.6e-13 Score=118.82 Aligned_cols=197 Identities=19% Similarity=0.184 Sum_probs=107.8
Q ss_pred cccccccceeeeeccCCCCCc----cCCCcc-ccccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeC
Q 038157 3 IELPCAANFIYNLKRTPTTHN----FPMTKS-LLSIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYT 77 (207)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~ 77 (207)
=.|-|..+.....+..++... .|+... .....++||||||+|.||++||+.+++.|.+|+|+||....||+...+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s 451 (1167)
T PTZ00306 372 RVTDYTTYTREGERVAHMFEIATEDAEMRKKRIAGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKA 451 (1167)
T ss_pred ceeeEEEEeeccchhhhhhcccccCccccccccccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhc
Confidence 345666666665555554443 233221 123457999999999999999999999999999999998887765443
Q ss_pred CCCCCC-------cCCCCCCcceeccc-------------ccccccccCCc--ceecccccccccc--CCCCCC------
Q 038157 78 PRVESD-------QLGVDPNRAVIHTS-------------LYSSLRTNLPR--EVMGFTDYPFTAR--DDGSGD------ 127 (207)
Q Consensus 78 ~~~~~~-------~~~~~~~~~~~~~~-------------~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~------ 127 (207)
.+.... ..+..+....+... +...+...... +++.-.+.++... ......
T Consensus 452 ~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~ 531 (1167)
T PTZ00306 452 TSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKGGHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRA 531 (1167)
T ss_pred ccccccCCchhhhhhcccccHHHHHHHHHHhccCCCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeec
Confidence 332211 11111111000000 00000000000 0000001111100 000000
Q ss_pred -----CCCCCChhHHHHHHHHHHHHc---CCceeEEeceEEEEEEeecC---------CcEEEEEEec--CCCceeEEEe
Q 038157 128 -----PRRFPGHAEVLRYLEEFVSEF---GIDEMVRFESEVVNVGLMEN---------NKWKVKSKLR--NGDGDCDEIY 188 (207)
Q Consensus 128 -----~~~~~~~~~~~~~l~~~~~~~---~~~~~v~~~~~V~~l~~~~~---------~~~~v~~~~~--~~~~~~~i~a 188 (207)
.........+...|.+.+++. +++ ++++++++++..+++ .+.+|.+.+. .+++...+.|
T Consensus 532 ~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~--i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A 609 (1167)
T PTZ00306 532 PDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVT--IMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA 609 (1167)
T ss_pred CcccCCCcCCcHHHHHHHHHHHHHhhccCCcE--EEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe
Confidence 001112345667777777653 788 999999999998631 3456777654 1233567899
Q ss_pred CEEEEccCCCCCC
Q 038157 189 DAVVVCNGHYTEP 201 (207)
Q Consensus 189 ~~VV~AtG~~s~~ 201 (207)
+.||+|||+++..
T Consensus 610 kaVILATGGf~~N 622 (1167)
T PTZ00306 610 DAVILATGGFSND 622 (1167)
T ss_pred ceEEEecCCcccC
Confidence 9999999999874
No 132
>PRK13748 putative mercuric reductase; Provisional
Probab=99.50 E-value=3e-13 Score=111.86 Aligned_cols=51 Identities=37% Similarity=0.677 Sum_probs=43.2
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcce
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAV 93 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~ 93 (207)
.+|||+|||||++|+.+|..|++.|.+|+|||+. .+||.|.. .+|.|.+..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n--------~gciPsk~l 147 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN--------VGCVPSKIM 147 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc--------cCccccHHH
Confidence 4699999999999999999999999999999997 78888863 355665543
No 133
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.50 E-value=9.6e-13 Score=106.07 Aligned_cols=69 Identities=22% Similarity=0.352 Sum_probs=49.0
Q ss_pred CChhHHHHHHHHHHHH-cCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSE-FGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~-~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
+....+.+.|.+.+.+ .|++ ++++++|+++..++++.|.+++.+...++..++.||+||+|+|+||..+
T Consensus 181 VD~~~L~~aL~~~l~~~~Gv~--i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~L 250 (497)
T PRK13339 181 VNFGALTRKLAKHLESHPNAQ--VKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPL 250 (497)
T ss_pred cCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHH
Confidence 3445667777776754 4777 9999999999887447798875432222123589999999999999644
No 134
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.50 E-value=2.7e-13 Score=109.53 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=84.3
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec------------cccccccc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH------------TSLYSSLR 103 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 103 (207)
+||+|||+|.+|+++|+.+++.|.+|+|+||....+ +...............+...... ......+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~-~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKS-NSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCC-CcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 699999999999999999999999999999975322 21111111111111011100000 00011111
Q ss_pred ccCCc--ceeccccccccccC-C-CCCCCCC----CCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEE
Q 038157 104 TNLPR--EVMGFTDYPFTARD-D-GSGDPRR----FPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKS 175 (207)
Q Consensus 104 ~~~~~--~~~~~~~~~~~~~~-~-~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~ 175 (207)
...+. +++.-.+.++.... . ....... -.....+.+.|.+.+++.+++ ++.+ .++.+..+++...+|.+
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~-~v~~l~~~~g~v~Gv~~ 157 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVN--FIRG-FAEELAIKNGKAYGVFL 157 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCE--EEEe-EeEEEEeeCCEEEEEEE
Confidence 11000 00000011221110 0 0000010 012357888888888888887 6654 78888765533445554
Q ss_pred EecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 176 KLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 176 ~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
++ ..+.++.||+|||+++...
T Consensus 158 -~g-----~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 158 -DG-----ELLKFDATVIATGGFSGLF 178 (466)
T ss_pred -CC-----EEEEeCeEEECCCcCcCCC
Confidence 21 3689999999999998764
No 135
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.50 E-value=2.3e-13 Score=110.98 Aligned_cols=161 Identities=18% Similarity=0.165 Sum_probs=89.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec------------ccccccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH------------TSLYSSL 102 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 102 (207)
.+||+|||+|.||+++|+.+++ |.+|+|+||....+++.....+.........+...... ......+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 5799999999999999999976 89999999987766655444332211111111110000 0001111
Q ss_pred cccCCcce--eccccccccccC--------CCCCCC-C-CC----CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEee
Q 038157 103 RTNLPREV--MGFTDYPFTARD--------DGSGDP-R-RF----PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLM 166 (207)
Q Consensus 103 ~~~~~~~~--~~~~~~~~~~~~--------~~~~~~-~-~~----~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~ 166 (207)
....+... +.-.+.+|.... ...... + .+ .....+.+.|.+.++ .+++ ++.++.|+++..+
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~--i~~~~~v~~Li~~ 158 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVT--VVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCE--EEECeEhhheeec
Confidence 11100000 000011121110 001000 1 11 123456777777665 5777 9999999999876
Q ss_pred cCCcEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 167 ENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 167 ~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
++...++.+.+. +++...+.|+.||+|||+++.
T Consensus 159 ~g~v~Gv~~~~~-~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 159 NGRCIGVLTKDS-EGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred CCEEEEEEEEEC-CCcEEEEEcCeEEEecCCCcc
Confidence 534455766653 232457899999999999886
No 136
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.50 E-value=1.8e-13 Score=102.07 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=57.0
Q ss_pred CCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecC--CcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCCCC
Q 038157 128 PRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN--NKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRIAE 205 (207)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~--~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~p~ 205 (207)
...+.......+.+++.+++.|+. ++.+.+|+.+...+. ....|.+.+++ .+.||.+|+++|+|...++|+
T Consensus 146 ~gGvi~a~kslk~~~~~~~~~G~i--~~dg~~v~~~~~~~e~~~~v~V~Tt~gs-----~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 146 SGGVINAAKSLKALQDKARELGVI--FRDGEKVKFIKFVDEEGNHVSVQTTDGS-----IYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred cccEeeHHHHHHHHHHHHHHcCeE--EecCcceeeEeeccCCCceeEEEeccCC-----eeecceEEEEecHHHHhhcCc
Confidence 344566778889999999999998 899999999885432 45667776644 689999999999999988874
No 137
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.50 E-value=1e-12 Score=90.93 Aligned_cols=142 Identities=25% Similarity=0.351 Sum_probs=86.3
Q ss_pred EEECCChhHHHHHHHHHHC-----CCeEEEEeeCCCCCceeeeCCC-CCCCcCCCCCCcceeccccc-ccccccCCccee
Q 038157 39 AVIGAGAAGLVAARELRRE-----GHKVVVLEKSNRIGGTWVYTPR-VESDQLGVDPNRAVIHTSLY-SSLRTNLPREVM 111 (207)
Q Consensus 39 ~IIG~G~aG~~~A~~l~~~-----g~~v~liE~~~~~gg~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 111 (207)
+|||+|++|++++.+|.+. ..+|+|||+.+ +|....+... .....++............. ..+..+......
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~-~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP-FGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-ccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 5999999999999999987 46999999954 4534333332 23333333332221111111 111111100000
Q ss_pred ccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHc------CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeE
Q 038157 112 GFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF------GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCD 185 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~ 185 (207)
.. ........|+++..+.+||.+.++.. ++++ .+...+|+++...+ +.+.|.+.++. .
T Consensus 80 -------~~--~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v-~~~~~~V~~i~~~~-~~~~v~~~~g~-----~ 143 (156)
T PF13454_consen 80 -------DE--AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITV-RHVRAEVVDIRRDD-DGYRVVTADGQ-----S 143 (156)
T ss_pred -------cc--ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEE-EEEeeEEEEEEEcC-CcEEEEECCCC-----E
Confidence 00 11234567888888888877777542 3342 34578999999988 66888887754 6
Q ss_pred EEeCEEEEccCC
Q 038157 186 EIYDAVVVCNGH 197 (207)
Q Consensus 186 i~a~~VV~AtG~ 197 (207)
+.+|.||+|+|+
T Consensus 144 ~~~d~VvLa~Gh 155 (156)
T PF13454_consen 144 IRADAVVLATGH 155 (156)
T ss_pred EEeCEEEECCCC
Confidence 899999999995
No 138
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.50 E-value=6.1e-13 Score=109.54 Aligned_cols=45 Identities=42% Similarity=0.718 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC--CCCceeeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSN--RIGGTWVYTP 78 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~--~~gg~~~~~~ 78 (207)
.++||+|||+|.+|+++|+.+++.|.+|+||||.+ ..||....+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~ 49 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSL 49 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccC
Confidence 46899999999999999999999999999999988 5677655443
No 139
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.49 E-value=1.9e-13 Score=110.31 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=50.1
Q ss_pred CChhHHHHHHHHHHHH----cCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSE----FGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~----~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
.....+...|.+.+++ .|..+.++++++|+++..++++.|.|++.++ .+.||.||+|+|+||..+
T Consensus 208 Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G------~i~A~~VVvaAG~~S~~L 276 (497)
T PTZ00383 208 VDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG------EIRARFVVVSACGYSLLF 276 (497)
T ss_pred ECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC------EEEeCEEEECcChhHHHH
Confidence 3455777888888888 7733238999999999987546788877542 489999999999998653
No 140
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.49 E-value=3.9e-13 Score=104.86 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCC
Q 038157 135 AEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 135 ~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
..+.+.|.+.+.+. +.+ ++++++|++|.+.+++.|.|++.+..+++..++.|+.|++++|++|.+++
T Consensus 181 G~LTr~l~~~l~~~~~~~--~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL 248 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFE--LHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLL 248 (488)
T ss_pred HHHHHHHHHHHHhCCCcE--EEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence 46667666667665 788 99999999999998778999998876666789999999999999987754
No 141
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.49 E-value=1.6e-13 Score=112.58 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=90.2
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec------------ccccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH------------TSLYS 100 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 100 (207)
..++||+|||+|.||++||+.++ .|.+|+|+||....+++...+.+.........+...... ..+..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 85 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 85 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 45689999999999999999996 499999999987766655444332211111111110000 00111
Q ss_pred cccccCCcc--eeccccccccccC-------CCCC-CCCC-C---CChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEe
Q 038157 101 SLRTNLPRE--VMGFTDYPFTARD-------DGSG-DPRR-F---PGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGL 165 (207)
Q Consensus 101 ~~~~~~~~~--~~~~~~~~~~~~~-------~~~~-~~~~-~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~ 165 (207)
.+....+.. ++.-.+.+|.... .... ..+. + .....+...|.+.+++. +++ +++++.++++..
T Consensus 86 ~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~--i~~~~~v~~Li~ 163 (553)
T PRK07395 86 FLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIE--IISQALALSLWL 163 (553)
T ss_pred HHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcE--EEECcChhhhee
Confidence 111110000 0000011111100 0000 0011 1 12356777777777654 788 999999999987
Q ss_pred ec--CCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 166 ME--NNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 166 ~~--~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
++ +.+.+|.+.+ ++....+.|+.||+|||+++..
T Consensus 164 ~~~~g~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~~ 199 (553)
T PRK07395 164 EPETGRCQGISLLY--QGQITWLRAGAVILATGGGGQV 199 (553)
T ss_pred cCCCCEEEEEEEEE--CCeEEEEEcCEEEEcCCCCccc
Confidence 63 2445665544 2223568899999999997653
No 142
>PLN02546 glutathione reductase
Probab=99.49 E-value=5.5e-14 Score=115.14 Aligned_cols=144 Identities=18% Similarity=0.193 Sum_probs=82.7
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeC---------CCCCceeeeCCCCCCCcCCCCCCcceeccccc-ccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKS---------NRIGGTWVYTPRVESDQLGVDPNRAVIHTSLY-SSL 102 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~---------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 102 (207)
..+|||+|||+|++|..+|..|+++|.+|+|+|+. ..+||.| ...||.|.+........ ..+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC--------~n~GCiPsK~l~~aa~~~~~~ 148 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTC--------VLRGCVPKKLLVYASKYSHEF 148 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcc--------cCcchHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999999999962 2344444 46688887765543222 111
Q ss_pred cccCCcceeccccccccccCCCCCCCCCCC----ChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEec
Q 038157 103 RTNLPREVMGFTDYPFTARDDGSGDPRRFP----GHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLR 178 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~ 178 (207)
.. ............ ..++..... ....+..++.+.+++.+++ ++.+ +++.+.. + .|.+ +
T Consensus 149 ~~-~~~~g~~~~~~~------~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~--~i~G-~a~~vd~---~--~V~v-~- 211 (558)
T PLN02546 149 EE-SRGFGWKYETEP------KHDWNTLIANKNAELQRLTGIYKNILKNAGVT--LIEG-RGKIVDP---H--TVDV-D- 211 (558)
T ss_pred Hh-hhhcCcccCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEe-EEEEccC---C--EEEE-C-
Confidence 11 111111000000 000000010 0123445566666677776 5543 3333322 2 2443 2
Q ss_pred CCCceeEEEeCEEEEccCCCCCCCCCCCC
Q 038157 179 NGDGDCDEIYDAVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 179 ~~~~~~~i~a~~VV~AtG~~s~~~~p~~~ 207 (207)
+..+.+|.||+||| +.+..|++|
T Consensus 212 ----G~~~~~D~LVIATG--s~p~~P~Ip 234 (558)
T PLN02546 212 ----GKLYTARNILIAVG--GRPFIPDIP 234 (558)
T ss_pred ----CEEEECCEEEEeCC--CCCCCCCCC
Confidence 13689999999999 888888765
No 143
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.49 E-value=1.9e-13 Score=105.78 Aligned_cols=151 Identities=23% Similarity=0.300 Sum_probs=84.5
Q ss_pred cccEEEECCChhHHHHHHHHHHCC-CeEEEEeeCCCCCceeee----CCCCCCCcCCCCCCcceeccccccccccc-CCc
Q 038157 35 SINVAVIGAGAAGLVAARELRREG-HKVVVLEKSNRIGGTWVY----TPRVESDQLGVDPNRAVIHTSLYSSLRTN-LPR 108 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g-~~v~liE~~~~~gg~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 108 (207)
.+|+|+||.||+++++|..|.+.+ .++..+||.+.+ .|.. .+..... ...+.+... .+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~-------------~fl~Dlvt~~~P~ 66 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQV-------------SFLKDLVTLRDPT 66 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS--------------TTSSSSTTT-TT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCcccc-------------ccccccCcCcCCC
Confidence 489999999999999999999875 899999987543 3331 1111111 111111111 111
Q ss_pred ceeccccccccccC--CCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCC---cEEEEEEecCCCce
Q 038157 109 EVMGFTDYPFTARD--DGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENN---KWKVKSKLRNGDGD 183 (207)
Q Consensus 109 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~---~~~v~~~~~~~~~~ 183 (207)
..+.+.++-..... +.......++.+..+.+|+++.+++.... ++++.+|++|....++ .|.|.+.+.+ +..
T Consensus 67 s~~sflnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~~~~~~V~~~~~~-g~~ 143 (341)
T PF13434_consen 67 SPFSFLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGDEDLFRVTTRDSD-GDG 143 (341)
T ss_dssp STTSHHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETTEEEEEEEEEETT-S-E
T ss_pred CcccHHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCCccEEEEEEeecC-CCe
Confidence 11111111000000 00112455678899999999999998877 9999999999987643 5899997633 336
Q ss_pred eEEEeCEEEEccCCCCCCCCCC
Q 038157 184 CDEIYDAVVVCNGHYTEPRIAE 205 (207)
Q Consensus 184 ~~i~a~~VV~AtG~~s~~~~p~ 205 (207)
..+.|+.||+|+| ..|.+|.
T Consensus 144 ~~~~ar~vVla~G--~~P~iP~ 163 (341)
T PF13434_consen 144 ETYRARNVVLATG--GQPRIPE 163 (341)
T ss_dssp EEEEESEEEE------EE---G
T ss_pred eEEEeCeEEECcC--CCCCCCc
Confidence 7899999999999 8888885
No 144
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.48 E-value=5.2e-13 Score=106.34 Aligned_cols=61 Identities=15% Similarity=-0.021 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCC-cEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENN-KWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~-~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
.....+...|.+.+++.|++ ++.+++|++++..+++ .+.|++.++ .+.++.||+|+|+|+.
T Consensus 180 v~p~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~~~~~~v~t~~g------~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 180 ARHDAVAWGYARGADRRGVD--IIQNCEVTGFIRRDGGRVIGVETTRG------FIGAKKVGVAVAGHSS 241 (407)
T ss_pred CCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEeCCc------eEECCEEEECCChhhH
Confidence 34456667788888889998 8999999999864323 345666442 4899999999999975
No 145
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.48 E-value=6.2e-13 Score=109.86 Aligned_cols=165 Identities=18% Similarity=0.089 Sum_probs=90.0
Q ss_pred cEEEECCChhHHHHHHHHH----HCCCeEEEEeeCCCCCceeeeCCCC--CCCcCCC---CCCcceec------------
Q 038157 37 NVAVIGAGAAGLVAARELR----REGHKVVVLEKSNRIGGTWVYTPRV--ESDQLGV---DPNRAVIH------------ 95 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~----~~g~~v~liE~~~~~gg~~~~~~~~--~~~~~~~---~~~~~~~~------------ 95 (207)
||+|||+|.||++||+.++ +.|.+|+|+||....+.+. .+.+. ....+.. .+......
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 6799999999976532222 22221 1111110 01110000
Q ss_pred ccccccccccCCcceecc--ccccccccC-CCCCCCC----CCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeec-
Q 038157 96 TSLYSSLRTNLPREVMGF--TDYPFTARD-DGSGDPR----RFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLME- 167 (207)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~- 167 (207)
..+...+.+..+.....+ -+.+|.... ....... .......+...+...+.+.+++ ++.++.++++..++
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~--i~~~~~v~~Ll~d~~ 157 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGD--IFERIFIVKLLLDKN 157 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCe--EEcccEEEEEEecCC
Confidence 001111111111111001 112222110 0000000 0012345566666666666666 99999999999754
Q ss_pred --CCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCCC
Q 038157 168 --NNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRIA 204 (207)
Q Consensus 168 --~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~p 204 (207)
+.+++|.+.+..+++...+.|+.||+|||+|+..+.|
T Consensus 158 ~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~ 196 (614)
T TIGR02061 158 TPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRP 196 (614)
T ss_pred CCCeEEEEEEEEeCCCcEEEEECCEEEECCCccccccCC
Confidence 3566777755444445678999999999999875544
No 146
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.48 E-value=4.5e-13 Score=108.55 Aligned_cols=41 Identities=34% Similarity=0.625 Sum_probs=38.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
..|||+|||||++|+.+|..|++.|.+|+|+|+. .+||.|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 4699999999999999999999999999999996 6788876
No 147
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=7.1e-13 Score=99.17 Aligned_cols=159 Identities=19% Similarity=0.347 Sum_probs=106.9
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEee--CCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcc
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEK--SNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPRE 109 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~--~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+.+||.+|||||.+|+++|-.++..|.+|.++|- ....|..|. -+.++...+|-|++.+...++..........
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWG--lGGTCvNVGCIPKKLMHQAallG~al~da~k- 92 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWG--LGGTCVNVGCIPKKLMHQAALLGEALHDARK- 92 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccc--cCceeeecccccHHHHHHHHHHHHHHHHHHh-
Confidence 46789999999999999999999999999999993 334566665 3456778899998776665555433322221
Q ss_pred eeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEe-ceEEEEEEeecC--CcEEEEEEecCCCceeEE
Q 038157 110 VMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRF-ESEVVNVGLMEN--NKWKVKSKLRNGDGDCDE 186 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~-~~~V~~l~~~~~--~~~~v~~~~~~~~~~~~i 186 (207)
++|... ....-..+..+.+..++..+..+.--++.+ ..+|.-+..-.. +...|...+..+. .+.+
T Consensus 93 ------yGW~~~-----e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk-~~~~ 160 (503)
T KOG4716|consen 93 ------YGWNVD-----EQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGK-ERFL 160 (503)
T ss_pred ------hCCCCc-----cccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCc-eEEe
Confidence 233222 011223456888899999988776533444 344444432221 3455666555443 6789
Q ss_pred EeCEEEEccCCCCCCCCCCCC
Q 038157 187 IYDAVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 187 ~a~~VV~AtG~~s~~~~p~~~ 207 (207)
+|+.+|+|+| .+|+.|+||
T Consensus 161 ta~~fvIatG--~RPrYp~Ip 179 (503)
T KOG4716|consen 161 TAENFVIATG--LRPRYPDIP 179 (503)
T ss_pred ecceEEEEec--CCCCCCCCC
Confidence 9999999999 888888876
No 148
>PLN02661 Putative thiazole synthesis
Probab=99.48 E-value=1.1e-12 Score=100.43 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=83.1
Q ss_pred cCcccEEEECCChhHHHHHHHHHHC-CCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCccee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRRE-GHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~-g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
..++||+|||+|++|+++|+.|++. |.+|+|+||...+||+...... ..... .........+.+
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~-l~~~~-------vv~~~a~e~LeE------- 154 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQ-LFSAM-------VVRKPAHLFLDE------- 154 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcc-ccccc-------ccccHHHHHHHH-------
Confidence 3568999999999999999999976 8999999998877653321111 00000 000000000000
Q ss_pred ccccccccccCCCCCCCCCCC--ChhHHHHHHHHHHH-HcCCceeEEeceEEEEEEeecCCcEEEEEE------ecCCC-
Q 038157 112 GFTDYPFTARDDGSGDPRRFP--GHAEVLRYLEEFVS-EFGIDEMVRFESEVVNVGLMENNKWKVKSK------LRNGD- 181 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~-~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~------~~~~~- 181 (207)
.+.++... ..++. ....+...|.+.+. +.+++ ++.++.|+++..+++...++.+. ++.+.
T Consensus 155 --lGV~fd~~------dgy~vv~ha~e~~stLi~ka~~~~gVk--I~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s 224 (357)
T PLN02661 155 --LGVPYDEQ------ENYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQS 224 (357)
T ss_pred --cCCCcccC------CCeeEecchHHHHHHHHHHHHhcCCCE--EEeCeEeeeEEecCCEEEEEEeecchhhhccCCCC
Confidence 01111111 00111 22344455665554 46788 99999999999876455555542 22211
Q ss_pred --ceeEEEeCEEEEccCCCC
Q 038157 182 --GDCDEIYDAVVVCNGHYT 199 (207)
Q Consensus 182 --~~~~i~a~~VV~AtG~~s 199 (207)
+...+.|+.||+|||+.+
T Consensus 225 ~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 225 CMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred ccceeEEECCEEEEcCCCCC
Confidence 124689999999999654
No 149
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.48 E-value=3.1e-13 Score=108.69 Aligned_cols=41 Identities=37% Similarity=0.604 Sum_probs=37.2
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC-CCceee
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNR-IGGTWV 75 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~-~gg~~~ 75 (207)
+|||+|||||++|+.+|+.|+++|.+|+|+|+.+. .||.|.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 59999999999999999999999999999999753 677775
No 150
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.47 E-value=1e-12 Score=103.42 Aligned_cols=140 Identities=21% Similarity=0.218 Sum_probs=84.2
Q ss_pred cEEEECCChhHHHHHHHH--HHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCC-cceecccccccccccCCcceecc
Q 038157 37 NVAVIGAGAAGLVAAREL--RREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPN-RAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l--~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
||+|||||+||+++|+.| ++.|.+|+|||+....+ |. +......+..... ........|....- ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~--~~--~~~tW~~~~~~~~~~~~~v~~~w~~~~v-------~~ 69 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPP--WP--NDRTWCFWEKDLGPLDSLVSHRWSGWRV-------YF 69 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcccc--cc--CCcccccccccccchHHHHheecCceEE-------Ee
Confidence 899999999999999999 77899999999876541 10 1111011111100 00000111111110 00
Q ss_pred ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
.+...... ...........+.+.+.+.+...+ . .+.+++|++++..+ +.+.|++.++. .++|+.||.
T Consensus 70 ~~~~~~~~----~~~Y~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~-~~~~v~~~~g~-----~i~a~~VvD 136 (374)
T PF05834_consen 70 PDGSRILI----DYPYCMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETG-DGVLVVLADGR-----TIRARVVVD 136 (374)
T ss_pred CCCceEEc----ccceEEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecC-ceEEEEECCCC-----EEEeeEEEE
Confidence 00000000 011123567789999998888444 4 78899999999987 56677777644 799999999
Q ss_pred ccCCCCC
Q 038157 194 CNGHYTE 200 (207)
Q Consensus 194 AtG~~s~ 200 (207)
|+|..+.
T Consensus 137 a~g~~~~ 143 (374)
T PF05834_consen 137 ARGPSSP 143 (374)
T ss_pred CCCcccc
Confidence 9995544
No 151
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.47 E-value=8.1e-13 Score=109.55 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=87.0
Q ss_pred EEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC-ceeeeCCCCC---CCcCCCCCCcceec------------cccccc
Q 038157 38 VAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG-GTWVYTPRVE---SDQLGVDPNRAVIH------------TSLYSS 101 (207)
Q Consensus 38 v~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g-g~~~~~~~~~---~~~~~~~~~~~~~~------------~~~~~~ 101 (207)
|+|||+|.||++||+.+++.|.+|+|+||...++ ++.....+.. ....+..+....+. ......
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~ 80 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVKR 80 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 6999999999999999999999999999987443 2222222211 11111111110000 001111
Q ss_pred ccccCCcc--eeccccccccccCC---------CCCCCC-CC---CChhHHHHHHHHHHHH----cCCceeEEeceEEEE
Q 038157 102 LRTNLPRE--VMGFTDYPFTARDD---------GSGDPR-RF---PGHAEVLRYLEEFVSE----FGIDEMVRFESEVVN 162 (207)
Q Consensus 102 ~~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~-~~---~~~~~~~~~l~~~~~~----~~~~~~v~~~~~V~~ 162 (207)
+....+.. ++.-.+.+|..... .....+ .+ .....+...|.+.+++ .+++ +++++++++
T Consensus 81 l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~--i~~~t~v~~ 158 (603)
T TIGR01811 81 LAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVE--KYEGWEMLD 158 (603)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcE--EEeCcEEEE
Confidence 11111100 00000111211100 000000 01 1234555556555543 3677 999999999
Q ss_pred EEeecC-CcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 163 VGLMEN-NKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 163 l~~~~~-~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
+..+++ .+.+|.+.+..+++...+.|+.||+|||+++...
T Consensus 159 Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~ 199 (603)
T TIGR01811 159 IIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNVF 199 (603)
T ss_pred EEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCcC
Confidence 987543 4567777664333346789999999999987654
No 152
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.47 E-value=9.2e-13 Score=108.37 Aligned_cols=46 Identities=28% Similarity=0.498 Sum_probs=41.1
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPR 79 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~ 79 (207)
..++||||||+| +|+++|+.+++.|.+|+||||.+..||+...+.+
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG 59 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGG 59 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCC
Confidence 457999999999 8999999999999999999999888887776654
No 153
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.47 E-value=4.8e-13 Score=109.14 Aligned_cols=163 Identities=22% Similarity=0.199 Sum_probs=90.0
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC-CCceeeeCCCCCCCcCCCCCCcceec------------cccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNR-IGGTWVYTPRVESDQLGVDPNRAVIH------------TSLY 99 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 99 (207)
..++||+|||+|.||+++|+.++ +.+|+|+||... .+++..+..+......+..+...... ....
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v 84 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVA 84 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 45689999999999999999997 579999999876 34444433332222222211111000 0001
Q ss_pred ccccccCCcc--eeccccccccccCC--------CCCCC-C-CC----CChhHHHHHHHHHHHHc-CCceeEEeceEEEE
Q 038157 100 SSLRTNLPRE--VMGFTDYPFTARDD--------GSGDP-R-RF----PGHAEVLRYLEEFVSEF-GIDEMVRFESEVVN 162 (207)
Q Consensus 100 ~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~-~-~~----~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~ 162 (207)
..+....+.. ++.-.+.+|..... ..+.. + .+ .....+.+.|.+.+++. +++ ++.++.|++
T Consensus 85 ~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~--i~~~~~v~~ 162 (513)
T PRK07512 85 ALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSIT--VLEGAEARR 162 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCE--EEECcChhh
Confidence 1111110000 00000111111100 00000 0 01 12356778888877765 788 999999999
Q ss_pred EEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 163 VGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 163 l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
+..+++...++.+.+..+ ...+.|+.||+|||+++..
T Consensus 163 Li~~~g~v~Gv~~~~~~~--~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 163 LLVDDGAVAGVLAATAGG--PVVLPARAVVLATGGIGGL 199 (513)
T ss_pred eeecCCEEEEEEEEeCCe--EEEEECCEEEEcCCCCcCC
Confidence 987653455666654221 2468999999999998754
No 154
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.47 E-value=1.2e-13 Score=104.69 Aligned_cols=162 Identities=19% Similarity=0.249 Sum_probs=90.0
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC-----CCceeeeCCCCCCCcCCCCCCcceecccccccccccC
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNR-----IGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNL 106 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~-----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
....+||+|||+|.+|+++|+.|++.|.||.+|||+-. +|.-....+......+|..+-...+.......+.-+.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk 121 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK 121 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe
Confidence 35679999999999999999999999999999999721 1221111111111222322221111111111111100
Q ss_pred CcceeccccccccccCC-CCCCCCCCCChhHHHHHHHHHHHH-cCCceeEEeceEEEEEEeecCCcEEEEEEecCCCcee
Q 038157 107 PREVMGFTDYPFTARDD-GSGDPRRFPGHAEVLRYLEEFVSE-FGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDC 184 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~ 184 (207)
.... ...+|..... ....+..|.+++- .+.|++.+.. .++ -..+..|.++..+++-.-+|+..++.++ +.
T Consensus 122 ~gk~---v~~pyP~~~f~~d~~GrsFhnGRF-vq~lR~ka~slpNV---~~eeGtV~sLlee~gvvkGV~yk~k~ge-e~ 193 (509)
T KOG1298|consen 122 DGKE---VDLPYPLKNFPSDPSGRSFHNGRF-VQRLRKKAASLPNV---RLEEGTVKSLLEEEGVVKGVTYKNKEGE-EV 193 (509)
T ss_pred CCce---eeccCCCcCCCCCcccceeeccHH-HHHHHHHHhcCCCe---EEeeeeHHHHHhccCeEEeEEEecCCCc-eE
Confidence 0000 0122221111 1223444444444 4445555544 454 3668888999888743345888776655 47
Q ss_pred EEEeCEEEEccCCCCCC
Q 038157 185 DEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 185 ~i~a~~VV~AtG~~s~~ 201 (207)
+..|...|+|||-+|.-
T Consensus 194 ~~~ApLTvVCDGcfSnl 210 (509)
T KOG1298|consen 194 EAFAPLTVVCDGCFSNL 210 (509)
T ss_pred EEecceEEEecchhHHH
Confidence 78899999999988864
No 155
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.46 E-value=7.3e-13 Score=106.42 Aligned_cols=41 Identities=39% Similarity=0.615 Sum_probs=36.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC-CCceee
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNR-IGGTWV 75 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~-~gg~~~ 75 (207)
+|||+|||||++|+++|..|+++|.+|+|+||.+. .||.+.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 59999999999999999999999999999999864 577654
No 156
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.46 E-value=1.8e-12 Score=105.66 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=84.6
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecccc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTD 115 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (207)
|||+|||+|++|+.+|..+++.|.+|+|+|+.....|.+..++.......+...............+ ......++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~---~d~~~i~~r~ 77 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKA---ADKAGLQFRV 77 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHH---HHhhceehee
Confidence 6999999999999999999999999999999744332221111110000000000000000000000 0000011100
Q ss_pred ccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEee-cCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 116 YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLM-ENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~-~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
...... ...........+..+...+.+.+++. +++ ++..+|+++..+ ++....|.+.++. .+.|+.||+
T Consensus 78 ln~skg-pAV~~~RaQVDr~~y~~~L~e~Le~~pgV~---Ile~~Vv~li~e~~g~V~GV~t~~G~-----~I~Ad~VIL 148 (617)
T TIGR00136 78 LNSSKG-PAVRATRAQIDKVLYRKAMRNALENQPNLS---LFQGEVEDLILEDNDEIKGVVTQDGL-----KFRAKAVII 148 (617)
T ss_pred cccCCC-CcccccHHhCCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEEecCCcEEEEEECCCC-----EEECCEEEE
Confidence 000000 01112223445667888888888877 443 456688888765 4356677776633 699999999
Q ss_pred ccCCCCC
Q 038157 194 CNGHYTE 200 (207)
Q Consensus 194 AtG~~s~ 200 (207)
|||+|..
T Consensus 149 ATGtfL~ 155 (617)
T TIGR00136 149 TTGTFLR 155 (617)
T ss_pred ccCcccC
Confidence 9999964
No 157
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.46 E-value=1.2e-12 Score=108.28 Aligned_cols=45 Identities=31% Similarity=0.537 Sum_probs=39.4
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYT 77 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~ 77 (207)
..++||+|||+|.+|+++|+.+++.|.+|+||||....||....+
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~~s 53 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALS 53 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHHHh
Confidence 457999999999999999999999999999999998777654443
No 158
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.46 E-value=1.2e-12 Score=104.57 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 133 GHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
....+...|.+.+++.|++ ++.+++|++++.++++.+.|++.+ .++.||.||+|+|.|+..+
T Consensus 199 ~p~~~~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~v~t~~------~~~~a~~VV~a~G~~~~~l 260 (416)
T PRK00711 199 DCQLFTQRLAAMAEQLGVK--FRFNTPVDGLLVEGGRITGVQTGG------GVITADAYVVALGSYSTAL 260 (416)
T ss_pred CHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCCEEEEEEeCC------cEEeCCEEEECCCcchHHH
Confidence 4457778888888888988 899999999988763333455442 2589999999999998643
No 159
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.46 E-value=2.3e-13 Score=110.12 Aligned_cols=55 Identities=29% Similarity=0.552 Sum_probs=45.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHC-CCeEEEEeeC--------CCCCceeeeCCCCCCCcCCCCCCcceecc
Q 038157 34 QSINVAVIGAGAAGLVAARELRRE-GHKVVVLEKS--------NRIGGTWVYTPRVESDQLGVDPNRAVIHT 96 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~-g~~v~liE~~--------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 96 (207)
.+|||+|||+|++|..+|..+++. |.+|+|||+. ..+||.|. ..+|-|.+.++..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl--------n~GCiPsK~l~~~ 65 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV--------NVGCVPKKLMVTG 65 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec--------CcCCccHHHHHHH
Confidence 469999999999999999999997 8999999984 34666654 5678887765544
No 160
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.46 E-value=3.7e-13 Score=108.88 Aligned_cols=39 Identities=36% Similarity=0.608 Sum_probs=36.2
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
|||+|||||++|+.+|..|+++|.+|+|+|+.. +||.|.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999974 788875
No 161
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.46 E-value=2.1e-13 Score=110.87 Aligned_cols=33 Identities=33% Similarity=0.613 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKS 67 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~ 67 (207)
.|||+|||||++|+.+|..|++.|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999973
No 162
>PRK12839 hypothetical protein; Provisional
Probab=99.46 E-value=4.2e-12 Score=104.76 Aligned_cols=46 Identities=37% Similarity=0.581 Sum_probs=40.3
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTP 78 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~ 78 (207)
..++||+|||+|.+|+++|+.+++.|.+|+||||....||.+..+.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~ 51 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSG 51 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccC
Confidence 4579999999999999999999999999999999887777655444
No 163
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.45 E-value=7.4e-13 Score=107.10 Aligned_cols=40 Identities=43% Similarity=0.649 Sum_probs=37.2
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
.|||+|||||++|+.+|+.|++.|.+|+|||+ +.+||.|.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL 40 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 38999999999999999999999999999999 67888875
No 164
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.45 E-value=8.4e-13 Score=109.26 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEe-CEEEEccCCCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIY-DAVVVCNGHYTE 200 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a-~~VV~AtG~~s~ 200 (207)
..+...|.+.+++.|++ ++++++|+++..+++.+..|.+.+..+ ...+.| +.||+|+|+|+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~--i~~~t~v~~l~~~~g~v~GV~~~~~~~--~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 217 NALVARLLKSAEDLGVR--IWESAPARELLREDGRVAGAVVETPGG--LQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCCEEEEEEEEECCc--EEEEEeCCEEEEcCCCccc
Confidence 34667788888889998 999999999987653455666654321 356889 999999999985
No 165
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.45 E-value=1.6e-12 Score=107.07 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEe-CEEEEccCCCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIY-DAVVVCNGHYTE 200 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a-~~VV~AtG~~s~ 200 (207)
..+...|.+.+++.+++ ++++++|+++..+++.+.+|..... ++...+.| +.||+|||+++.
T Consensus 208 ~~l~~~l~~~~~~~gv~--i~~~~~v~~Li~~~g~v~Gv~~~~~--g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVP--LWTNTPLTELIVEDGRVVGVVVVRD--GREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeCCEEEEEEEEEC--CeEEEEEecceEEEecCCccC
Confidence 45666777888888998 9999999999987645566766532 22456888 579999999987
No 166
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.45 E-value=9.9e-13 Score=108.78 Aligned_cols=45 Identities=47% Similarity=0.629 Sum_probs=39.7
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTP 78 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~ 78 (207)
.++||+|||+|++|+++|+.++++|.+|+|+||....||....+.
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s~ 52 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSG 52 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccceeC
Confidence 468999999999999999999999999999999988777655443
No 167
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.44 E-value=1.7e-12 Score=105.00 Aligned_cols=52 Identities=35% Similarity=0.592 Sum_probs=43.4
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCccee
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVI 94 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 94 (207)
+|||+|||+|++|+.+|..++++|.+|+|+|+...+||.+. ..+|.|.+...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~--------~~gciPsK~l~ 54 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL--------NVGCMPSKALL 54 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec--------cCcccccHHHH
Confidence 58999999999999999999999999999998667888765 34566655433
No 168
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.44 E-value=1e-12 Score=108.67 Aligned_cols=159 Identities=20% Similarity=0.206 Sum_probs=82.9
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC--C-c----eeeeCCCCC--CCcCCCCCCcceeccccc--cc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI--G-G----TWVYTPRVE--SDQLGVDPNRAVIHTSLY--SS 101 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~--g-g----~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~ 101 (207)
..+.+|+|||||++|+++|+.|+++|++|+|+||.... + | .+...++.. ...++............. ..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 45689999999999999999999999999999997421 1 1 111111110 001111000000000000 00
Q ss_pred cccc-CCcceecccccccc-ccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecC
Q 038157 102 LRTN-LPREVMGFTDYPFT-ARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRN 179 (207)
Q Consensus 102 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~ 179 (207)
+... ..........+... ..............+..+.+.|.+.+ +.. .++++++|++++.++ +.+.|++.++.
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~al---g~~-~i~~g~~V~~I~~~~-d~VtV~~~dG~ 233 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAV---GED-VIRNESNVVDFEDSG-DKVTVVLENGQ 233 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhC---CCC-EEEcCCEEEEEEEeC-CEEEEEECCCC
Confidence 0000 00000000000000 00000000011245667777775433 332 267899999998876 66778776643
Q ss_pred CCceeEEEeCEEEEccCCCCCC
Q 038157 180 GDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 180 ~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
++.+|.||+|+|.||.-
T Consensus 234 -----ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 234 -----RYEGDLLVGADGIWSKV 250 (668)
T ss_pred -----EEEcCEEEECCCCCcHH
Confidence 68999999999999864
No 169
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.43 E-value=1e-13 Score=107.51 Aligned_cols=145 Identities=21% Similarity=0.261 Sum_probs=78.1
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEe-eCCCCCceeeeCCCCCCCcCCCCCCcceecc--cccccccccCCcceecc
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLE-KSNRIGGTWVYTPRVESDQLGVDPNRAVIHT--SLYSSLRTNLPREVMGF 113 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE-~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 113 (207)
||+|||||+||+.||+.+++.|.+|+|+. +.+..+ ....++..... .+.....+ .+-..+.........++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~-~~~Cnpsigg~-----~kg~L~~Eidalgg~m~~~aD~~~i~~ 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG-EMSCNPSIGGI-----AKGHLVREIDALGGLMGRAADETGIHF 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT---SSSSEEEST-----THHHHHHHHHHTT-SHHHHHHHHEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc-cccchhhhccc-----cccchhHHHhhhhhHHHHHHhHhhhhh
Confidence 89999999999999999999999999993 333332 11111111000 00000000 00000000000111111
Q ss_pred ccccccccC--CCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCE
Q 038157 114 TDYPFTARD--DGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDA 190 (207)
Q Consensus 114 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~ 190 (207)
...... ......+....+..+.+++.+.+++. +++ ....+|+++..+++...+|.+.++ ..+.+|.
T Consensus 75 ---~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~---i~~~~V~~l~~e~~~v~GV~~~~g-----~~~~a~~ 143 (392)
T PF01134_consen 75 ---RMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLT---IIQGEVTDLIVENGKVKGVVTKDG-----EEIEADA 143 (392)
T ss_dssp ---EEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE---EEES-EEEEEECTTEEEEEEETTS-----EEEEECE
T ss_pred ---hcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeE---EEEcccceEEecCCeEEEEEeCCC-----CEEecCE
Confidence 111000 01112223456678889999999874 554 458899999998766777888663 4799999
Q ss_pred EEEccCCC
Q 038157 191 VVVCNGHY 198 (207)
Q Consensus 191 VV~AtG~~ 198 (207)
||+|||.+
T Consensus 144 vVlaTGtf 151 (392)
T PF01134_consen 144 VVLATGTF 151 (392)
T ss_dssp EEE-TTTG
T ss_pred EEEecccc
Confidence 99999974
No 170
>PRK09897 hypothetical protein; Provisional
Probab=99.43 E-value=1.4e-12 Score=106.04 Aligned_cols=152 Identities=15% Similarity=0.236 Sum_probs=84.7
Q ss_pred ccEEEECCChhHHHHHHHHHHCC--CeEEEEeeCCCCCceeeeCCCCCCC--cCCCCCCcceecccccccccccCCccee
Q 038157 36 INVAVIGAGAAGLVAARELRREG--HKVVVLEKSNRIGGTWVYTPRVESD--QLGVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g--~~v~liE~~~~~gg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
++|+|||||++|+++|.+|.+.+ .+|+|+|++..+|....+++..... ..+....... .....+..+......
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p---~~~~~f~~Wl~~~~~ 78 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIP---PIYCTYLEWLQKQED 78 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccC---CChHHHHHHhhhhhH
Confidence 58999999999999999998864 5999999988888777666532111 1111100000 001111111111110
Q ss_pred ccc-cccccccCCCCCCCCCCCChhHHHHHHHH-------HHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCce
Q 038157 112 GFT-DYPFTARDDGSGDPRRFPGHAEVLRYLEE-------FVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGD 183 (207)
Q Consensus 112 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~ 183 (207)
.+. ....... ......|+++..+.+||.+ .+.+.|..+.++.+++|+++..++ +.+.|++.++.
T Consensus 79 ~~~~~~g~~~~---~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~~V~t~~gg---- 150 (534)
T PRK09897 79 SHLQRYGVKKE---TLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGVMLATNQDL---- 150 (534)
T ss_pred HHHHhcCCcce---eecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEEEEEECCCC----
Confidence 000 0000000 0112345555444333333 333444222377789999998877 66777765432
Q ss_pred eEEEeCEEEEccCCC
Q 038157 184 CDEIYDAVVVCNGHY 198 (207)
Q Consensus 184 ~~i~a~~VV~AtG~~ 198 (207)
..+.+|.||+|+|+.
T Consensus 151 ~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 151 PSETFDLAVIATGHV 165 (534)
T ss_pred eEEEcCEEEECCCCC
Confidence 368999999999974
No 171
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.43 E-value=2.4e-12 Score=101.83 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=47.8
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
.+...+...|...+++.|... +..++.++.+..+. +.+.|.+.++. +.|+.||+|+|+|+..
T Consensus 153 ~~p~~~~~~l~~~~~~~G~~~-~~~~~~~~~~~~~~-~~~~v~t~~g~------i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 153 LDPRLLTRALAAAAEELGVVI-IEGGTPVTSLERDG-RVVGVETDGGT------IEADKVVLAAGAWAGE 214 (387)
T ss_pred CCHHHHHHHHHHHHHhcCCeE-EEccceEEEEEecC-cEEEEEeCCcc------EEeCEEEEcCchHHHH
Confidence 445677888888888888431 56699999988874 56777776633 9999999999999775
No 172
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.43 E-value=1.7e-12 Score=105.22 Aligned_cols=145 Identities=21% Similarity=0.326 Sum_probs=77.3
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeC------CCCCceeeeCCCCCCCcCCCCCCcceecc-cccccccccC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKS------NRIGGTWVYTPRVESDQLGVDPNRAVIHT-SLYSSLRTNL 106 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 106 (207)
.+||++|||||++|+++|+.+++.|.+|+|+|+. ...||.|. ..+|.|.+..... ..+..+....
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~--------n~gc~P~k~l~~~a~~~~~~~~~~ 74 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL--------NVGCIPSKALLASSEEFENAGHHF 74 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc--------cccccHHHHHHHHHHHHHHHHhhH
Confidence 3699999999999999999999999999999982 34455553 3444444322211 1111111100
Q ss_pred CcceeccccccccccCCCCCCCCCCCChh----HHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCc
Q 038157 107 PREVMGFTDYPFTARDDGSGDPRRFPGHA----EVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDG 182 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~ 182 (207)
...........+. ......... .+...+.+.++..+++ ++. .++..+..++ +.+.|.+..++
T Consensus 75 ~~~G~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~~~~~-~~~~v~v~~~~--- 140 (475)
T PRK06327 75 ADHGIHVDGVKID-------VAKMIARKDKVVKKMTGGIEGLFKKNKIT--VLK-GRGSFVGKTD-AGYEIKVTGED--- 140 (475)
T ss_pred HhcCccCCCCccC-------HHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEecCCC-CCCEEEEecCC---
Confidence 0000000000000 000000001 2223444555566765 444 4455554444 45667665322
Q ss_pred eeEEEeCEEEEccCCCCCCC
Q 038157 183 DCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 183 ~~~i~a~~VV~AtG~~s~~~ 202 (207)
...+.+|+||+||| +.+.
T Consensus 141 ~~~~~~d~lViATG--s~p~ 158 (475)
T PRK06327 141 ETVITAKHVIIATG--SEPR 158 (475)
T ss_pred CeEEEeCEEEEeCC--CCCC
Confidence 13699999999999 5654
No 173
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.42 E-value=5.6e-12 Score=103.05 Aligned_cols=43 Identities=35% Similarity=0.674 Sum_probs=37.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYT 77 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~ 77 (207)
.++||+|||+| +|+++|+.+++.|.+|+||||....||+...+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~~ 48 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYS 48 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceecC
Confidence 46899999999 99999999999999999999987777665443
No 174
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.42 E-value=7.6e-12 Score=103.56 Aligned_cols=48 Identities=38% Similarity=0.468 Sum_probs=41.5
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCC
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPR 79 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~ 79 (207)
...++||+|||+|.+|+++|+.+++.|.+|+||||....||....+.+
T Consensus 13 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~g 60 (578)
T PRK12843 13 WDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSAG 60 (578)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccCc
Confidence 344689999999999999999999999999999998888877665544
No 175
>PTZ00367 squalene epoxidase; Provisional
Probab=99.42 E-value=1.3e-12 Score=107.15 Aligned_cols=35 Identities=34% Similarity=0.600 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..+||+|||||++|+++|+.|++.|++|+|+||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999975
No 176
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.41 E-value=5.1e-12 Score=97.06 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=99.3
Q ss_pred cCcccEEEECCChhHHHHHHHHHHC------CCeEEEEeeCCCCCceeeeCCCCCCCcC-CCCCCcceeccccccccccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRRE------GHKVVVLEKSNRIGGTWVYTPRVESDQL-GVDPNRAVIHTSLYSSLRTN 105 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~------g~~v~liE~~~~~gg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 105 (207)
...+||+|||||+||+++|+.|.|. .++|+++||...+||......-.....+ .+.|.+......+.......
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d 153 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSD 153 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccccccc
Confidence 3579999999999999999999873 5799999999888876542211111111 11222211111111111110
Q ss_pred CCcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCC-cEEEEEEecC----C
Q 038157 106 LPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENN-KWKVKSKLRN----G 180 (207)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~-~~~v~~~~~~----~ 180 (207)
..........++........+...+.+.-.++.++|-+.+++.|++ ++-+..+.++..++++ +.+|.+.|-. +
T Consensus 154 ~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvE--iyPg~aaSevly~edgsVkGiaT~D~GI~k~G 231 (621)
T KOG2415|consen 154 KFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVE--IYPGFAASEVLYDEDGSVKGIATNDVGISKDG 231 (621)
T ss_pred ceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCce--eccccchhheeEcCCCcEeeEeeccccccCCC
Confidence 0000000011111111123344556666789999999999999999 8889998888887654 4457665521 1
Q ss_pred ------CceeEEEeCEEEEccCCCC
Q 038157 181 ------DGDCDEIYDAVVVCNGHYT 199 (207)
Q Consensus 181 ------~~~~~i~a~~VV~AtG~~s 199 (207)
.++.++.|+..|.|-|-+.
T Consensus 232 ~pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 232 APKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred CccccccccceecceeEEEeccccc
Confidence 1246789999999998654
No 177
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.41 E-value=1.5e-12 Score=106.39 Aligned_cols=166 Identities=25% Similarity=0.249 Sum_probs=99.1
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCC-----Cccee------------
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDP-----NRAVI------------ 94 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~-----~~~~~------------ 94 (207)
...++||+|||||.||+.||+.+++.|.+|+|+||....++......+.....+.... ....+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~ 82 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLG 82 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcC
Confidence 3457999999999999999999999999999999987666544433333322222111 01000
Q ss_pred cccccccccccCCcceeccc--cccccccCCC----------CCCCCCCC---ChhHHHHHHHHHHHH-cCCceeEEece
Q 038157 95 HTSLYSSLRTNLPREVMGFT--DYPFTARDDG----------SGDPRRFP---GHAEVLRYLEEFVSE-FGIDEMVRFES 158 (207)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~---~~~~~~~~l~~~~~~-~~~~~~v~~~~ 158 (207)
.++....+....+.....+. ..++....+. ......|. ....+...|.+.+.+ .+++ ++.++
T Consensus 83 dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~--~~~~~ 160 (562)
T COG1053 83 DQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIE--IFDEY 160 (562)
T ss_pred CHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcch--hhhhh
Confidence 01111111111111111111 1112111110 00112222 234677777777776 5556 78899
Q ss_pred EEEEEEeecCC-cEEEEEEecCCCceeEEEeCEEEEccCCCC
Q 038157 159 EVVNVGLMENN-KWKVKSKLRNGDGDCDEIYDAVVVCNGHYT 199 (207)
Q Consensus 159 ~V~~l~~~~~~-~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s 199 (207)
.++++..++++ ..++...+..+++...+.++.||+|||+..
T Consensus 161 ~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 161 FVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred hhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 99999877644 567877777777678888999999999987
No 178
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.39 E-value=1.7e-12 Score=105.17 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=42.8
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC-CCceeeeCCCCCCCcCCCCCCcceecc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNR-IGGTWVYTPRVESDQLGVDPNRAVIHT 96 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~ 96 (207)
+||++|||+|++|..+|+.+++.|.+|+++|+... ..+ ....-+..+...+|.|.+.++..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~-~~~~~GGtc~n~GCiPsK~l~~~ 63 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLG-TRWGIGGTCVNVGCIPKKLMHQA 63 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCC-cceeccccccccCcCchhHHHHH
Confidence 58999999999999999999999999999997421 000 00012233445678887754443
No 179
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.38 E-value=2.6e-11 Score=92.21 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
.++.+.++..+.++++. ..++++|+.+....++.+.|.+.+..+++.++++||.+.+|.| -+|+.
T Consensus 252 ~Eisk~~qr~L~kQgik--F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG--RrP~t 316 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIK--FKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG--RRPFT 316 (506)
T ss_pred HHHHHHHHHHHHhcCce--eEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc--Ccccc
Confidence 37778888888889998 9999999999999867889999998777788999999999999 44543
No 180
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.38 E-value=8.3e-12 Score=108.00 Aligned_cols=167 Identities=17% Similarity=0.098 Sum_probs=86.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC-CceeeeCCCCCCCcCCC-CCCcceecc------------cc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI-GGTWVYTPRVESDQLGV-DPNRAVIHT------------SL 98 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~-gg~~~~~~~~~~~~~~~-~~~~~~~~~------------~~ 98 (207)
..++||+|||+|.+|+++|+.+++.|.+|+|+||.... ++.+............. .+....+.. ..
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~ 90 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRT 90 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHH
Confidence 35689999999999999999999999999999997642 12211110011000000 011100000 00
Q ss_pred cccccccCCcce--eccccccccccCCC------CCCCCCC----CChhHHHHHHHHHHHHc----CCceeEEeceEEEE
Q 038157 99 YSSLRTNLPREV--MGFTDYPFTARDDG------SGDPRRF----PGHAEVLRYLEEFVSEF----GIDEMVRFESEVVN 162 (207)
Q Consensus 99 ~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~~l~~~~~~~----~~~~~v~~~~~V~~ 162 (207)
...+....+... +.-.+.+|....+. ......+ .....+...|.+.+.+. ++. +..++.+++
T Consensus 91 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~--~~~~~~~~~ 168 (897)
T PRK13800 91 VYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIR--IENRLMPVR 168 (897)
T ss_pred HHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcE--EEeceeeEE
Confidence 111111111000 00011222211110 0000011 13455666666666544 344 666777778
Q ss_pred EEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 163 VGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 163 l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
+..+++...++...+..+++...+.|+.||+|||+++..
T Consensus 169 Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 169 VLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRL 207 (897)
T ss_pred EEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccccC
Confidence 876653456677655444445788999999999998764
No 181
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.37 E-value=1.6e-11 Score=101.21 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeC-EEEEccCCCCC
Q 038157 136 EVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYD-AVVVCNGHYTE 200 (207)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~-~VV~AtG~~s~ 200 (207)
.+...|.+.+++.+++ ++++++|+++..+++.+..|.+... ++...+.|+ .||+|||++..
T Consensus 209 ~~~~~L~~~~~~~gv~--v~~~t~v~~l~~~~g~v~Gv~~~~~--g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 209 ALAAGLRIGLQRAGVP--VLLNTPLTDLYVEDGRVTGVHAAES--GEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHcCCCE--EEeCCEEEEEEEeCCEEEEEEEEeC--CcEEEEEeceeEEEccCCcCc
Confidence 4556677777888888 9999999999987544555666532 224678886 69999999876
No 182
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.36 E-value=3.7e-12 Score=97.81 Aligned_cols=36 Identities=39% Similarity=0.590 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI 70 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~ 70 (207)
+.+|+|||||++|+++|+.|.++|++|+|+|+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 368999999999999999999999999999986554
No 183
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.36 E-value=3.3e-12 Score=103.28 Aligned_cols=41 Identities=49% Similarity=0.762 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
.+|||+|||||++|+++|..|++.|.+|+|||+ ...||.|.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 359999999999999999999999999999999 56788775
No 184
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.35 E-value=2.8e-12 Score=103.84 Aligned_cols=40 Identities=40% Similarity=0.564 Sum_probs=36.6
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
+|||+|||||++|+++|..|++.|.+|+|+|++ ..||.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence 589999999999999999999999999999985 5677775
No 185
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.35 E-value=3.4e-12 Score=100.02 Aligned_cols=162 Identities=22% Similarity=0.209 Sum_probs=100.5
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceeccc------------ccccccc
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTS------------LYSSLRT 104 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 104 (207)
||+|||+|+|||++|+.|++. .+|+|+-|.....++..+..+.....++.++.......+ ....+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999988 999999998765555555555555555544432111110 0011111
Q ss_pred cCCcce--eccccccccccC--------CCCCCCCCC-----CChhHHHHHHHHHHHH-cCCceeEEeceEEEEEEeecC
Q 038157 105 NLPREV--MGFTDYPFTARD--------DGSGDPRRF-----PGHAEVLRYLEEFVSE-FGIDEMVRFESEVVNVGLMEN 168 (207)
Q Consensus 105 ~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~~l~~~~~~-~~~~~~v~~~~~V~~l~~~~~ 168 (207)
..+... ..-.+.+|+... +..+..+.. .....++..|.+.+++ .+++ ++.++.+.++..+++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~--v~e~~~a~~li~~~~ 165 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNIT--VLEGAEALDLIIEDG 165 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcE--EEecchhhhhhhcCC
Confidence 111000 000112222221 122222222 3456888888888877 5777 899999999999885
Q ss_pred CcE-EEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 169 NKW-KVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 169 ~~~-~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
..+ +|.+.+..+ +...+.++.||+|||+.+.-+
T Consensus 166 ~~~~Gv~~~~~~~-~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 166 IGVAGVLVLNRNG-ELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred ceEeEEEEecCCC-eEEEEecCeEEEecCCCcccc
Confidence 344 777766543 357899999999999987754
No 186
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=5.4e-12 Score=99.97 Aligned_cols=156 Identities=19% Similarity=0.144 Sum_probs=91.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
.|||+|||||.||+.||+..++.|.+++|+--+...-|.+..++....-.-+...+..+.....+.... .....++.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~---D~~~IQ~r 80 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAA---DKAGIQFR 80 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhh---hhcCCchh
Confidence 499999999999999999999999999999876444344443333221111111111111111111111 11111110
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCC-cEEEEEEecCCCceeEEEeCEEEE
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENN-KWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~-~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
-.. ..+.......+....+..+.+.+++.++....- -.+...|+++..++++ +++|.+.+|. .+.|+.||+
T Consensus 81 ~LN-~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL--~l~q~~v~dli~e~~~~v~GV~t~~G~-----~~~a~aVVl 152 (621)
T COG0445 81 MLN-SSKGPAVRAPRAQADKWLYRRAMKNELENQPNL--HLLQGEVEDLIVEEGQRVVGVVTADGP-----EFHAKAVVL 152 (621)
T ss_pred hcc-CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCc--eehHhhhHHHhhcCCCeEEEEEeCCCC-----eeecCEEEE
Confidence 000 001012223333445556777777777665322 4678889999886643 6778888755 799999999
Q ss_pred ccCCCCCC
Q 038157 194 CNGHYTEP 201 (207)
Q Consensus 194 AtG~~s~~ 201 (207)
+||.|-.-
T Consensus 153 TTGTFL~G 160 (621)
T COG0445 153 TTGTFLRG 160 (621)
T ss_pred eecccccc
Confidence 99987543
No 187
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.33 E-value=1.7e-11 Score=92.09 Aligned_cols=148 Identities=20% Similarity=0.278 Sum_probs=91.3
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
..||.+|||||..|++.|+.+++.|.++.|+|..-..||.+. ..+|-|++.+...+.+........
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV--------n~GCVPKKvm~~~a~~~~~~~da~------ 84 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV--------NVGCVPKKVMWYAADYSEEMEDAK------ 84 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE--------eeccccceeEEehhhhhHHhhhhh------
Confidence 479999999999999999999999999999999767777765 567888876665554443322211
Q ss_pred ccccccc-cCCCCCCCCCCCChhHHHHHHHHHHH----HcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEe
Q 038157 114 TDYPFTA-RDDGSGDPRRFPGHAEVLRYLEEFVS----EFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIY 188 (207)
Q Consensus 114 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a 188 (207)
+++|.. ....+.|......++.....|....+ +..+. ++.++. . ..+++.+.|...++. ...++|
T Consensus 85 -~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~--~i~G~a-~---f~~~~~v~V~~~d~~---~~~Yta 154 (478)
T KOG0405|consen 85 -DYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVK--LIEGRA-R---FVSPGEVEVEVNDGT---KIVYTA 154 (478)
T ss_pred -hcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhcccccee--EEeeeE-E---EcCCCceEEEecCCe---eEEEec
Confidence 222222 11122232222333444443433333 33333 333221 1 112244566666654 246899
Q ss_pred CEEEEccCCCCCCCCCCCC
Q 038157 189 DAVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 189 ~~VV~AtG~~s~~~~p~~~ 207 (207)
+++++|+| ++|.+|+||
T Consensus 155 k~iLIAtG--g~p~~PnIp 171 (478)
T KOG0405|consen 155 KHILIATG--GRPIIPNIP 171 (478)
T ss_pred ceEEEEeC--CccCCCCCC
Confidence 99999999 888888887
No 188
>PRK07846 mycothione reductase; Reviewed
Probab=99.31 E-value=7.4e-12 Score=100.83 Aligned_cols=50 Identities=20% Similarity=0.499 Sum_probs=39.4
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH 95 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 95 (207)
+||++|||+|++|..+|.. +.|.+|+|+|+. ..||.|. ..||-|++....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~--------n~GCiPsK~l~~ 50 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCL--------NVGCIPTKMFVY 50 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCccc--------CcCcchhHHHHH
Confidence 4899999999999998865 459999999985 5677765 457777765443
No 189
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.31 E-value=2e-11 Score=98.01 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHcCCceeEEeceEEEEEEeec-CC-cEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 134 HAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLME-NN-KWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~-~~-~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
...+.+.|.+.+++.+++ ++++++|+++..++ ++ ...|...++ ...+.|+.||+|+|+++.
T Consensus 122 g~~l~~~L~~~a~~~Gv~--i~~~~~v~~l~~~~~~g~v~gv~~~~~----~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 122 GKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFDGAHDGPLTTVG----THRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCCCeEEEEEEcCC----cEEEEcCEEEEcCCCccc
Confidence 456888899999999998 99999999998763 23 333444221 247899999999998865
No 190
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.31 E-value=8.1e-11 Score=102.80 Aligned_cols=42 Identities=36% Similarity=0.644 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
..+||+|||||++|+++|+.|++.|.+|+|+|+.+..||.+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~ 203 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLL 203 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeee
Confidence 368999999999999999999999999999999888877654
No 191
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.30 E-value=1.2e-11 Score=92.08 Aligned_cols=162 Identities=23% Similarity=0.291 Sum_probs=91.8
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeC-CCCC------CCcCCCCCCcceeccc------------
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYT-PRVE------SDQLGVDPNRAVIHTS------------ 97 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~-~~~~------~~~~~~~~~~~~~~~~------------ 97 (207)
-|+|||+|.||++++..+...|-.|+|+|+...+||+.... .+.. ...+...+....+..+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 79999999999999999999887899999998888764432 2221 1112222221111111
Q ss_pred ccccccccCCcceecc----ccccccccCC--------CCCCCCCCCChh----HHHHHHHHHHHHcCCceeEEeceEEE
Q 038157 98 LYSSLRTNLPREVMGF----TDYPFTARDD--------GSGDPRRFPGHA----EVLRYLEEFVSEFGIDEMVRFESEVV 161 (207)
Q Consensus 98 ~~~~~~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~v~~~~~V~ 161 (207)
+.+.+...... ..+| .+...+...+ ........++.. .+...|.+.+.+..--+.+..+++|+
T Consensus 91 Lm~~La~~S~~-AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv 169 (477)
T KOG2404|consen 91 LMEKLAANSAS-AVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV 169 (477)
T ss_pred HHHHHHhcCHH-HHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence 11111111110 0001 0010000000 111111223333 44444555555544333388899999
Q ss_pred EEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 162 NVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 162 ~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
++.++++++..|...|.++. ...+.++.||+|||+++.
T Consensus 170 ~il~n~gkVsgVeymd~sge-k~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 170 DILRNNGKVSGVEYMDASGE-KSKIIGDAVVLATGGFGY 207 (477)
T ss_pred eeecCCCeEEEEEEEcCCCC-ccceecCceEEecCCcCc
Confidence 99988767778888876554 456889999999999985
No 192
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.30 E-value=4.6e-11 Score=93.85 Aligned_cols=36 Identities=33% Similarity=0.625 Sum_probs=32.8
Q ss_pred cEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCCCCc
Q 038157 37 NVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNRIGG 72 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~~gg 72 (207)
||+|||||++|+++|+.|++. |.+|+++|+.+..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 899999999999999999986 999999999876554
No 193
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.30 E-value=7e-11 Score=92.76 Aligned_cols=154 Identities=21% Similarity=0.303 Sum_probs=100.9
Q ss_pred ccEEEECCChhHHHHHHHHHHC--C-CeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec-ccccccccccCCccee
Q 038157 36 INVAVIGAGAAGLVAARELRRE--G-HKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH-TSLYSSLRTNLPREVM 111 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~--g-~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 111 (207)
++|+|||+|++|+++|.+|.+. . .+|.|+|+....|.+..|+.....+.++......... .+....+..+....
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~-- 79 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQ-- 79 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhc--
Confidence 6999999999999999999984 2 2499999999999999998877666666554443322 22222222221111
Q ss_pred ccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHc---CCce-eEEeceEEEEEEeecC-CcEEEEEEecCCCceeEE
Q 038157 112 GFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF---GIDE-MVRFESEVVNVGLMEN-NKWKVKSKLRNGDGDCDE 186 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~-~v~~~~~V~~l~~~~~-~~~~v~~~~~~~~~~~~i 186 (207)
........+.......|+.+..+.+||.+..... +-+. ..+..++++++..+++ +.+.++..++. ..
T Consensus 80 ---~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~-----~~ 151 (474)
T COG4529 80 ---LQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGP-----SE 151 (474)
T ss_pred ---ccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCC-----ee
Confidence 1122222224556778888888877777665432 2211 1456888888887732 55667766644 57
Q ss_pred EeCEEEEccCCCC
Q 038157 187 IYDAVVVCNGHYT 199 (207)
Q Consensus 187 ~a~~VV~AtG~~s 199 (207)
.||.+|+|||+-.
T Consensus 152 ~ad~~Vlatgh~~ 164 (474)
T COG4529 152 IADIIVLATGHSA 164 (474)
T ss_pred eeeEEEEeccCCC
Confidence 8999999999643
No 194
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.29 E-value=8.7e-12 Score=100.74 Aligned_cols=49 Identities=33% Similarity=0.663 Sum_probs=40.1
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCccee
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVI 94 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 94 (207)
+|+|||+|++|+.+|..|++.|.+|+|+||. ..||.|. ..+|.|.+..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~--------n~gciPsk~l~ 50 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL--------NEGCMPTKSLL 50 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC--------CCccccchHHH
Confidence 7999999999999999999999999999996 4566654 34666665443
No 195
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.29 E-value=4.7e-11 Score=96.66 Aligned_cols=144 Identities=22% Similarity=0.272 Sum_probs=79.2
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceeccc-ccccccccCCcceeccc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTS-LYSSLRTNLPREVMGFT 114 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 114 (207)
.|++|||+|++|+.+|..|+++|.+|+|+|+.. .||.+. ..+|.|.+..+... ....+.. .........
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~--------~~gciPsK~l~~~a~~~~~~~~-~~~~g~~~~ 71 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAV--------LTDCVPSKTLIATAEVRTELRR-AAELGIRFI 71 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccc--------ccCCcchHHHHHHHHHHHHHHH-HHhCCcccc
Confidence 489999999999999999999999999999974 666665 34666665444321 1111111 000000000
Q ss_pred ---cccccccCCCCCCCCCCCC----hhHHHHHHHHHHHHcCCceeEEeceEEEEEE--eecCCcEEEEEEecCCCceeE
Q 038157 115 ---DYPFTARDDGSGDPRRFPG----HAEVLRYLEEFVSEFGIDEMVRFESEVVNVG--LMENNKWKVKSKLRNGDGDCD 185 (207)
Q Consensus 115 ---~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~--~~~~~~~~v~~~~~~~~~~~~ 185 (207)
..... ....... ...+.+.+.+.+++.+++ ++.+ +++.+. .++ +.+.|...++. .+.
T Consensus 72 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~~~g-~~~~~~~~~~~-~~v~V~~~~g~---~~~ 137 (466)
T PRK07845 72 DDGEARVD-------LPAVNARVKALAAAQSADIRARLEREGVR--VIAG-RGRLIDPGLGP-HRVKVTTADGG---EET 137 (466)
T ss_pred cCcccccC-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEE-EEEEeecccCC-CEEEEEeCCCc---eEE
Confidence 00000 0000000 012233455666677776 5554 344433 233 44555543322 246
Q ss_pred EEeCEEEEccCCCCCCCCCC
Q 038157 186 EIYDAVVVCNGHYTEPRIAE 205 (207)
Q Consensus 186 i~a~~VV~AtG~~s~~~~p~ 205 (207)
+.+|+||+||| +.+..|+
T Consensus 138 ~~~d~lViATG--s~p~~~p 155 (466)
T PRK07845 138 LDADVVLIATG--ASPRILP 155 (466)
T ss_pred EecCEEEEcCC--CCCCCCC
Confidence 89999999999 6665443
No 196
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.29 E-value=9.6e-12 Score=103.53 Aligned_cols=54 Identities=33% Similarity=0.604 Sum_probs=44.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeC-CCCCceeeeCCCCCCCcCCCCCCcceecc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKS-NRIGGTWVYTPRVESDQLGVDPNRAVIHT 96 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 96 (207)
+|||+|||+|++|..+|+.+++.|.+|+|||+. ...||.|. ..||.|.+.++..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv--------n~GCiPsK~l~~~ 170 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV--------NVGCIPSKALLYA 170 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee--------EeCCcchHHHHHH
Confidence 689999999999999999999999999999974 35777765 4577777755543
No 197
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.29 E-value=1.8e-10 Score=70.52 Aligned_cols=80 Identities=26% Similarity=0.410 Sum_probs=66.7
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccccc
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDY 116 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (207)
.++|||||+.|+.+|..|++.|.+|+|+++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--------------------------------------------- 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--------------------------------------------- 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS---------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh---------------------------------------------
Confidence 48999999999999999999999999999986431
Q ss_pred cccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEec
Q 038157 117 PFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLR 178 (207)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~ 178 (207)
+.. ...+...+.+.+++.|++ +++++++.++..++++ +.|++.||
T Consensus 36 ~~~--------------~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~~-~~V~~~~g 80 (80)
T PF00070_consen 36 PGF--------------DPDAAKILEEYLRKRGVE--VHTNTKVKEIEKDGDG-VEVTLEDG 80 (80)
T ss_dssp TTS--------------SHHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTS-EEEEEETS
T ss_pred hhc--------------CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCE-EEEEEecC
Confidence 000 137788888889999999 9999999999999855 66888764
No 198
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.28 E-value=9.2e-13 Score=103.84 Aligned_cols=166 Identities=18% Similarity=0.214 Sum_probs=99.4
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCc--------CCC----------------
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQ--------LGV---------------- 87 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~--------~~~---------------- 87 (207)
...++||+|||||..|.-+|+-++-+|.++.|+|+++..+|+.+.++....-. +.+
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~ 143 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERA 143 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999987766554433321000 000
Q ss_pred -----CCCc---ceecccccccccccCCcceeccccccccc------------------------cCCCCCCCCCC---C
Q 038157 88 -----DPNR---AVIHTSLYSSLRTNLPREVMGFTDYPFTA------------------------RDDGSGDPRRF---P 132 (207)
Q Consensus 88 -----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~---~ 132 (207)
.|.. ..+....|..+.....+ ....-|.+.. .......--+| .
T Consensus 144 ~lle~APhLs~~lPImlPvy~wwQvpYyw--~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyDGQ~ 221 (680)
T KOG0042|consen 144 NLLEIAPHLSQPLPIMLPVYKWWQVPYYW--VGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYDGQH 221 (680)
T ss_pred HHhhcCccccCCcceeeehhhhhhhhhee--ecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEecCCC
Confidence 0110 00001111111100000 0000011111 00000000001 1
Q ss_pred ChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCC-cEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 133 GHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENN-KWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~-~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
+...+.-.+.--+.++|.. +....+|.++..++++ ..++.+.|..++++..|+|+.||.|||.++..
T Consensus 222 nDaRmnl~vAlTA~r~GA~--v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDs 289 (680)
T KOG0042|consen 222 NDARMNLAVALTAARNGAT--VLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDS 289 (680)
T ss_pred chHHHHHHHHHHHHhcchh--hhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHH
Confidence 2235555566667788888 8889999999988764 55789999888888999999999999998764
No 199
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.27 E-value=2.3e-10 Score=92.87 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEee-cC---CcEEEEEEe-cCCCceeEEEeCEEEEccCCCCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLM-EN---NKWKVKSKL-RNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~-~~---~~~~v~~~~-~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
..+..-|.+.+++.|++ ++++++|+++..+ ++ .+.+|.+.. +.+........|.||+|+|+++..
T Consensus 226 eSLV~PL~~~Le~~GV~--f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVD--FQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred hHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 46677888999999999 9999999999985 21 234566653 332223445679999999987654
No 200
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.27 E-value=5.1e-11 Score=96.08 Aligned_cols=50 Identities=20% Similarity=0.500 Sum_probs=39.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH 95 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 95 (207)
+||++|||+|++|..+|.. +.|.+|+|+|+. ..||.|. ..||.|.+.++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~--------n~GCiPsK~l~~ 51 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCL--------NVGCIPTKMFVY 51 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeee--------ccCccchHHHHH
Confidence 5899999999999988654 469999999985 5787775 457788776553
No 201
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.26 E-value=6.2e-11 Score=102.48 Aligned_cols=107 Identities=23% Similarity=0.295 Sum_probs=73.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
...+|+|||||+||+++|+.|+++|++|+|+|+.+.+||.+.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG------------------------------------ 348 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG------------------------------------ 348 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc------------------------------------
Confidence 46899999999999999999999999999999998887765421
Q ss_pred ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
.+ .|.-..++.+...+.+++.|++ ++.++.+-. .+++.+.. ...+|+||+
T Consensus 349 --IP------------~~rlp~~vi~~~i~~l~~~Gv~--f~~n~~vG~---------dit~~~l~-----~~~yDAV~L 398 (944)
T PRK12779 349 --IP------------EFRLPNQLIDDVVEKIKLLGGR--FVKNFVVGK---------TATLEDLK-----AAGFWKIFV 398 (944)
T ss_pred --CC------------CCcChHHHHHHHHHHHHhhcCe--EEEeEEecc---------EEeHHHhc-----cccCCEEEE
Confidence 00 0001134555556667778887 787776421 24443311 245899999
Q ss_pred ccCCCCCCCCCCCC
Q 038157 194 CNGHYTEPRIAEIP 207 (207)
Q Consensus 194 AtG~~s~~~~p~~~ 207 (207)
|+|++ .++.+++|
T Consensus 399 AtGA~-~pr~l~Ip 411 (944)
T PRK12779 399 GTGAG-LPTFMNVP 411 (944)
T ss_pred eCCCC-CCCcCCCC
Confidence 99964 34444443
No 202
>PRK12831 putative oxidoreductase; Provisional
Probab=99.26 E-value=2.8e-11 Score=97.75 Aligned_cols=43 Identities=40% Similarity=0.601 Sum_probs=38.3
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
....||+|||||++|+++|+.|+++|++|+|+|+.+.+||.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 3467999999999999999999999999999999877777653
No 203
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.26 E-value=1.3e-10 Score=93.45 Aligned_cols=117 Identities=21% Similarity=0.362 Sum_probs=72.8
Q ss_pred cEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 37 NVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+|+|||||++|+.+|..|++. +.+|+|+|+++..+ +.+..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~~~---------------------------------- 44 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANCA---------------------------------- 44 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----cccCC----------------------------------
Confidence 899999999999999999886 68999999986432 00000
Q ss_pred cccccccCCCCCCCCCCCChhHHHHH-HHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRY-LEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
.++... ...........+ ...+.++.+++ ++.+++|+++..++ +. |.+.++.+.+..++.+|++|+
T Consensus 45 -lp~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~--v~~~~~V~~Id~~~-~~--v~~~~~~~~~~~~~~yd~lvi 111 (438)
T PRK13512 45 -LPYYIG-------EVVEDRKYALAYTPEKFYDRKQIT--VKTYHEVIAINDER-QT--VTVLNRKTNEQFEESYDKLIL 111 (438)
T ss_pred -cchhhc-------CccCCHHHcccCCHHHHHHhCCCE--EEeCCEEEEEECCC-CE--EEEEECCCCcEEeeecCEEEE
Confidence 000000 000000111111 12334556787 88899999998876 43 455444332234578999999
Q ss_pred ccCCCCCCCCCCC
Q 038157 194 CNGHYTEPRIAEI 206 (207)
Q Consensus 194 AtG~~s~~~~p~~ 206 (207)
||| |.+..|++
T Consensus 112 AtG--s~~~~~~~ 122 (438)
T PRK13512 112 SPG--ASANSLGF 122 (438)
T ss_pred CCC--CCCCCCCC
Confidence 999 77766654
No 204
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.26 E-value=9.1e-11 Score=94.57 Aligned_cols=118 Identities=25% Similarity=0.391 Sum_probs=71.8
Q ss_pred cEEEECCChhHHHHHHHHHHCC--CeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 37 NVAVIGAGAAGLVAARELRREG--HKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g--~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+|+|||||++|+++|..|++.+ .+|+|||+++..+ +....
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~----~~~~~---------------------------------- 43 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS----FGACG---------------------------------- 43 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce----eecCC----------------------------------
Confidence 6999999999999999999874 5999999986542 00000
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
.++... ..+.....+.....+.+++.+++ ++.+++|+++..++ +. |.+.+..+++...+.+|++|+|
T Consensus 44 -~~~~~~-------~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~-~~--v~~~~~~~~~~~~~~yd~lviA 110 (444)
T PRK09564 44 -LPYFVG-------GFFDDPNTMIARTPEEFIKSGID--VKTEHEVVKVDAKN-KT--ITVKNLKTGSIFNDTYDKLMIA 110 (444)
T ss_pred -CceEec-------cccCCHHHhhcCCHHHHHHCCCe--EEecCEEEEEECCC-CE--EEEEECCCCCEEEecCCEEEEC
Confidence 000000 00011112222333445667887 88899999998766 43 4444321121223449999999
Q ss_pred cCCCCCCCCCCCC
Q 038157 195 NGHYTEPRIAEIP 207 (207)
Q Consensus 195 tG~~s~~~~p~~~ 207 (207)
|| +.+..|++|
T Consensus 111 tG--~~~~~~~i~ 121 (444)
T PRK09564 111 TG--ARPIIPPIK 121 (444)
T ss_pred CC--CCCCCCCCC
Confidence 99 666666543
No 205
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.25 E-value=2.5e-11 Score=97.61 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=42.3
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCc-EEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNK-WKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~-~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
..+..+.++|.+.+++.|++ ++.+ +|+++..++++. ..|++.+ +.++.||.||.|||..+.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~--~~~g-~V~~v~~~~~g~i~~v~~~~-----g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVE--VIEG-TVVDVELDEDGRITAVRLDD-----GRTIEADFFIDASGRRSL 212 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEET--EEEEEE-TTSEEEEEEETT-----SEEEEESEEEE-SGGG-C
T ss_pred EeHHHHHHHHHHHHhcCCCE--EEeC-EEEEEEEcCCCCEEEEEECC-----CCEEEEeEEEECCCccch
Confidence 45679999999999999998 6665 588888876332 3455555 247999999999996544
No 206
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.25 E-value=4.1e-11 Score=96.82 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=54.8
Q ss_pred CCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 131 FPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
......+.+.|...+++.|.. ++.++.|+++....++.+.|.+..|+ |++.+||.|+|.|++.
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~--viE~cpV~~i~~~~~~~~gVeT~~G~------iet~~~VNaaGvWAr~ 245 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGAL--VIENCPVTGLHVETDKFGGVETPHGS------IETECVVNAAGVWARE 245 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcE--EEecCCcceEEeecCCccceeccCcc------eecceEEechhHHHHH
Confidence 345568889999999999999 99999999999887788889888766 9999999999999864
No 207
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.24 E-value=5.4e-11 Score=87.34 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=92.8
Q ss_pred CcccEEEECCChhHHHHHHHHHHCC------CeEEEEeeCCCCCceeeeCCCCCCCcCCCC------CCcceecccc---
Q 038157 34 QSINVAVIGAGAAGLVAARELRREG------HKVVVLEKSNRIGGTWVYTPRVESDQLGVD------PNRAVIHTSL--- 98 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g------~~v~liE~~~~~gg~~~~~~~~~~~~~~~~------~~~~~~~~~~--- 98 (207)
...+|+|||||+.|+++|+.|++.+ ..|+|+|+....||.....++.......-. .-...+++.+
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde 88 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE 88 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence 3479999999999999999999976 799999998776665444333221110000 0001111111
Q ss_pred cccccccCCcceec------ccc---------ccccccCC-------CCCCCCCCCChhHHHHHHHHHHHHcCCceeEEe
Q 038157 99 YSSLRTNLPREVMG------FTD---------YPFTARDD-------GSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRF 156 (207)
Q Consensus 99 ~~~~~~~~~~~~~~------~~~---------~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~ 156 (207)
+.....+..+.... +.+ ..|..... +........+...+.+.+.+.+++.+.. -..
T Consensus 89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V--~lv 166 (380)
T KOG2852|consen 89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGV--KLV 166 (380)
T ss_pred hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCe--EEE
Confidence 11111111111000 000 01110000 2223334456678889999999887632 344
Q ss_pred ceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCCCCCC
Q 038157 157 ESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 157 ~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~p~~~ 207 (207)
-..|.++..+..+...+-.+.. .+......++.+|++.|.|+..++|.++
T Consensus 167 ~Gkv~ev~dEk~r~n~v~~ae~-~~ti~~~d~~~ivvsaGPWTskllp~~r 216 (380)
T KOG2852|consen 167 FGKVKEVSDEKHRINSVPKAEA-EDTIIKADVHKIVVSAGPWTSKLLPFTR 216 (380)
T ss_pred EeeeEEeecccccccccchhhh-cCceEEeeeeEEEEecCCCchhhccccc
Confidence 5567777644312222222211 1113567889999999999999999764
No 208
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.23 E-value=1.4e-11 Score=88.75 Aligned_cols=119 Identities=31% Similarity=0.466 Sum_probs=71.9
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccccc
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTDY 116 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (207)
||+|||||++|+.+|..|++.+.+|+|+|+.+....... .+....... ..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~---------------------~~~~~~~~~---------~~ 50 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSG---------------------CIPSPLLVE---------IA 50 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHS---------------------HHHHHHHHH---------HH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccc---------------------ccccccccc---------cc
Confidence 799999999999999999999999999988643211000 000000000 00
Q ss_pred cccccCCCCCCCCCCCChhHHH--H--HHHHHHHHcCCceeEEeceEEEEEEeecCCc-----EEEEEEecCCCceeEEE
Q 038157 117 PFTARDDGSGDPRRFPGHAEVL--R--YLEEFVSEFGIDEMVRFESEVVNVGLMENNK-----WKVKSKLRNGDGDCDEI 187 (207)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~--~--~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~-----~~v~~~~~~~~~~~~i~ 187 (207)
... .... + .+.+.+...+++ ++.++++.++.... +. +.+..... ....++.
T Consensus 51 ~~~---------------~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 110 (201)
T PF07992_consen 51 PHR---------------HEFLPARLFKLVDQLKNRGVE--IRLNAKVVSIDPES-KRVVCPAVTIQVVET--GDGREIK 110 (201)
T ss_dssp HHH---------------HHHHHHHHGHHHHHHHHHTHE--EEHHHTEEEEEEST-TEEEETCEEEEEEET--TTEEEEE
T ss_pred ccc---------------cccccccccccccccccceEE--Eeeccccccccccc-cccccCcccceeecc--CCceEec
Confidence 000 0000 0 333344556777 77899999998876 42 23322221 1247899
Q ss_pred eCEEEEccCCCCCCCCCCCC
Q 038157 188 YDAVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 188 a~~VV~AtG~~s~~~~p~~~ 207 (207)
+|+||+|+| +.+..|++|
T Consensus 111 ~d~lviAtG--~~~~~~~i~ 128 (201)
T PF07992_consen 111 YDYLVIATG--SRPRTPNIP 128 (201)
T ss_dssp EEEEEEEST--EEEEEESST
T ss_pred CCeeeecCc--cccceeecC
Confidence 999999999 666555543
No 209
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.23 E-value=3.2e-10 Score=92.18 Aligned_cols=57 Identities=21% Similarity=0.171 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCC
Q 038157 134 HAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGH 197 (207)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~ 197 (207)
...+.+.|.+.+++.|++ ++++++|.+|..+++...+++..++ +.+.+|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~--I~~~~~V~~I~v~~g~g~~~~~~~g-----~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGE--IRTGAEVSQILVEGGKGVGVRTSDG-----ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCE--EECCCceEEEEEeCCcceEEecccc-----ceeccceeEecCch
Confidence 457889999999999999 9999999999998855555655553 35889999887764
No 210
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.22 E-value=2.5e-10 Score=91.47 Aligned_cols=122 Identities=21% Similarity=0.307 Sum_probs=74.8
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCccee
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
...+.+|+|||||.+|+.+|..|.+.+.+|+|||+.+..- +...
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~---------------------------~~~~--------- 50 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML---------------------------FTPL--------- 50 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc---------------------------hhhh---------
Confidence 3456799999999999999999987789999999875320 0000
Q ss_pred ccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecC---CCceeEEEe
Q 038157 112 GFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRN---GDGDCDEIY 188 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~---~~~~~~i~a 188 (207)
.+... ........+..-+...++..++ .+...+|++++.++ +.+.+...+.. ...+.++.+
T Consensus 51 ----l~~~~--------~g~~~~~~~~~~~~~~~~~~~~---~~i~~~V~~Id~~~-~~v~~~~~~~~~~~~~~g~~i~y 114 (424)
T PTZ00318 51 ----LPQTT--------TGTLEFRSICEPVRPALAKLPN---RYLRAVVYDVDFEE-KRVKCGVVSKSNNANVNTFSVPY 114 (424)
T ss_pred ----HHHhc--------ccCCChHHhHHHHHHHhccCCe---EEEEEEEEEEEcCC-CEEEEecccccccccCCceEecC
Confidence 00000 0000112344445555665665 35678999998876 55444332111 011357999
Q ss_pred CEEEEccCCCCCCCCCCCC
Q 038157 189 DAVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 189 ~~VV~AtG~~s~~~~p~~~ 207 (207)
|++|+|+| +.+..|.+|
T Consensus 115 D~LViAtG--s~~~~~~ip 131 (424)
T PTZ00318 115 DKLVVAHG--ARPNTFNIP 131 (424)
T ss_pred CEEEECCC--cccCCCCCC
Confidence 99999999 666555443
No 211
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.20 E-value=2.9e-11 Score=103.05 Aligned_cols=137 Identities=21% Similarity=0.272 Sum_probs=79.2
Q ss_pred cEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCCC---CceeeeCCCCCCCcCCCCCCcceecccccccccccCCccee
Q 038157 37 NVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNRI---GGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
+|+|||||++|+++|+.|+++ |++|+|+||.... |..+...+..........+. ....+...+.. ....
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~---~~~~~~~~~~~---~~~~ 75 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPV---SAAAIGDAFNH---WDDI 75 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHH---HHHHHHHhccc---CCce
Confidence 799999999999999999998 8999999998652 44443333221111000000 00000000000 0000
Q ss_pred ccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEE
Q 038157 112 GFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAV 191 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~V 191 (207)
.+........ .......-..+..+.+.|.+.+.+.+++ ++++++|+++... ...+|.|
T Consensus 76 ~~~~~g~~~~--~~g~~~~~i~R~~L~~~L~e~a~~~GV~--i~~g~~v~~i~~~------------------~~~~D~V 133 (765)
T PRK08255 76 DVHFKGRRIR--SGGHGFAGIGRKRLLNILQARCEELGVK--LVFETEVPDDQAL------------------AADADLV 133 (765)
T ss_pred EEEECCEEEE--ECCeeEecCCHHHHHHHHHHHHHHcCCE--EEeCCccCchhhh------------------hcCCCEE
Confidence 0000000000 0000111256789999999999999988 9999988764310 1468999
Q ss_pred EEccCCCCCC
Q 038157 192 VVCNGHYTEP 201 (207)
Q Consensus 192 V~AtG~~s~~ 201 (207)
|+|||.+|..
T Consensus 134 VgADG~~S~v 143 (765)
T PRK08255 134 IASDGLNSRI 143 (765)
T ss_pred EEcCCCCHHH
Confidence 9999998854
No 212
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.18 E-value=2.2e-10 Score=92.39 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=37.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHH--CCCeEEEEeeCCCCCceee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRR--EGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~--~g~~v~liE~~~~~gg~~~ 75 (207)
..+.+|+|||+|+||+++|..|++ .|++|+|+|+.+.+||.+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 346799999999999999999997 7999999999988876554
No 213
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.17 E-value=1.5e-10 Score=93.30 Aligned_cols=41 Identities=49% Similarity=0.712 Sum_probs=37.1
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
..++|+|||+|++|+++|..|++.|++|+|+|+.+.+||.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l 172 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV 172 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe
Confidence 46899999999999999999999999999999987776654
No 214
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.16 E-value=4.2e-10 Score=88.86 Aligned_cols=112 Identities=19% Similarity=0.291 Sum_probs=71.9
Q ss_pred ccEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 36 INVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
.+|+|||||+||+.+|..|++. +.+|+||++++... ++.. .+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~----y~~~---------------------~l----------- 46 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE----YNKP---------------------DL----------- 46 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC----cCcC---------------------cC-----------
Confidence 5999999999999999999885 46899999875320 0000 00
Q ss_pred ccccccccCCCCCCCCCCCChhHHHH-HHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEE
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLR-YLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVV 192 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV 192 (207)
..... .......+.. ...+.+++.+++ ++.+++|+++..++ . .|++ ++ ..+.+|+||
T Consensus 47 ---~~~~~--------~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~-~--~v~~-~~-----~~~~yd~LV 104 (377)
T PRK04965 47 ---SHVFS--------QGQRADDLTRQSAGEFAEQFNLR--LFPHTWVTDIDAEA-Q--VVKS-QG-----NQWQYDKLV 104 (377)
T ss_pred ---cHHHh--------CCCCHHHhhcCCHHHHHHhCCCE--EECCCEEEEEECCC-C--EEEE-CC-----eEEeCCEEE
Confidence 00000 0001112222 244556777888 88899999998765 3 3443 21 368999999
Q ss_pred EccCCCCCCCCCCCC
Q 038157 193 VCNGHYTEPRIAEIP 207 (207)
Q Consensus 193 ~AtG~~s~~~~p~~~ 207 (207)
+||| +.+..|++|
T Consensus 105 lATG--~~~~~p~i~ 117 (377)
T PRK04965 105 LATG--ASAFVPPIP 117 (377)
T ss_pred ECCC--CCCCCCCCC
Confidence 9999 667777664
No 215
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.16 E-value=6.4e-10 Score=90.79 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
..+.+.|.+.+++.|++ ++++++|+++..++++.+.|++.++. ++.||.||.|+|.|..
T Consensus 229 ~~l~~~L~~~~~~~G~~--i~~~~~V~~I~~~~~~~~gv~~~~g~-----~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQ--IRYRARVTKIILENGKAVGVKLADGE-----KIYAKRIVSNATRWDT 287 (493)
T ss_pred HHHHHHHHHHHHHCCCE--EEeCCeeeEEEecCCcEEEEEeCCCC-----EEEcCEEEECCChHHH
Confidence 46778888999999998 99999999998876566777776533 6899999999997644
No 216
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.16 E-value=1.1e-09 Score=82.55 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=33.9
Q ss_pred cCcccEEEECCChhHHHHHHHHHHC----CCeEEEEeeCCCC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRRE----GHKVVVLEKSNRI 70 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~----g~~v~liE~~~~~ 70 (207)
+..+||+|||||.+|++.|+.|.++ |++|+++||++..
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 5789999999999999999999874 6999999998653
No 217
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.14 E-value=4.9e-11 Score=91.10 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCceeEEeceEEEEEEee--cCCcEEEEEEecCCC-ceeEEEeCEEEEccCCCCCC
Q 038157 136 EVLRYLEEFVSEFGIDEMVRFESEVVNVGLM--ENNKWKVKSKLRNGD-GDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~--~~~~~~v~~~~~~~~-~~~~i~a~~VV~AtG~~s~~ 201 (207)
....+|....++.+++ ++.+++|++|..+ +.....|.+.+..+. ..+.+.++.||+|.|+...|
T Consensus 194 ~~~~~L~~a~~~~n~~--l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp 260 (296)
T PF00732_consen 194 AATTYLPPALKRPNLT--LLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTP 260 (296)
T ss_dssp HHHHHHHHHTTTTTEE--EEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHH
T ss_pred hhhcccchhhccCCcc--EEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCCh
Confidence 3455676666555888 9999999999775 325567888886655 34677889999999975444
No 218
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.13 E-value=4.4e-10 Score=87.93 Aligned_cols=41 Identities=44% Similarity=0.509 Sum_probs=36.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
...+|+|||+|++|+.+|..|++.|.+|+++|+.+.+++.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~ 57 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLM 57 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcee
Confidence 45699999999999999999999999999999987776544
No 219
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.12 E-value=9.7e-10 Score=94.64 Aligned_cols=42 Identities=50% Similarity=0.672 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
...+|+|||||+||+++|+.|+++|++|+|+|+.+.+||.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 457999999999999999999999999999999887776543
No 220
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.10 E-value=1.2e-09 Score=86.76 Aligned_cols=35 Identities=23% Similarity=0.508 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC--eEEEEeeCCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH--KVVVLEKSNR 69 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~--~v~liE~~~~ 69 (207)
+.+|+|||||++|+.+|..|++.|. +|+|+++...
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3589999999999999999999875 8999998753
No 221
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.10 E-value=1.7e-10 Score=68.01 Aligned_cols=36 Identities=47% Similarity=0.748 Sum_probs=33.2
Q ss_pred EECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 40 VIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 40 IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
|||||++|+++|+.|++.|++|+|+|+++.+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 899999999999999999999999999999988765
No 222
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.09 E-value=5.3e-10 Score=95.49 Aligned_cols=42 Identities=43% Similarity=0.628 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
...+|+|||||+||+++|..|+++|++|+|+|+.+.+||.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 457999999999999999999999999999999877776543
No 223
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.08 E-value=4.3e-10 Score=98.10 Aligned_cols=41 Identities=39% Similarity=0.553 Sum_probs=36.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
...+|+|||||+||+++|+.|+++|++|+|+|+.+.+||..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l 469 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVL 469 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCccee
Confidence 35799999999999999999999999999999987776554
No 224
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.8e-10 Score=84.58 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=85.4
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
...|||+||||||+|.++|...+++|++.-++-. .+||...-. +.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT---------------------------------~~ 253 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDT---------------------------------MG 253 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccc---------------------------------cc
Confidence 4579999999999999999999999998866632 245443311 11
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEee--cCCcEEEEEEecCCCceeEEEeCE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLM--ENNKWKVKSKLRNGDGDCDEIYDA 190 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~--~~~~~~v~~~~~~~~~~~~i~a~~ 190 (207)
..++- ...+.....+...|++..+++.++ +..--+.+.+++. +++.+.|++.++. .++++.
T Consensus 254 IENfI----------sv~~teGpkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~~~l~ev~l~nGa-----vLkakt 316 (520)
T COG3634 254 IENFI----------SVPETEGPKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVEGGLIEVELANGA-----VLKART 316 (520)
T ss_pred hhhee----------ccccccchHHHHHHHHHHhhcCch--hhhhhhhhcceecCCCCccEEEEecCCc-----eeccce
Confidence 10110 112234468999999999999988 8888888888874 2267889998865 789999
Q ss_pred EEEccCCCCCC
Q 038157 191 VVVCNGHYTEP 201 (207)
Q Consensus 191 VV~AtG~~s~~ 201 (207)
||++||+..+.
T Consensus 317 vIlstGArWRn 327 (520)
T COG3634 317 VILATGARWRN 327 (520)
T ss_pred EEEecCcchhc
Confidence 99999965543
No 225
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.08 E-value=9.3e-10 Score=89.00 Aligned_cols=41 Identities=46% Similarity=0.716 Sum_probs=36.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
...+|+|||||++|+++|..|+++|++|+|+|+.+.+||.+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l 179 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL 179 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe
Confidence 45799999999999999999999999999999987766543
No 226
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.07 E-value=1.2e-09 Score=85.95 Aligned_cols=110 Identities=17% Similarity=0.256 Sum_probs=70.3
Q ss_pred cEEEECCChhHHHHHHHHHHC---CCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 37 NVAVIGAGAAGLVAARELRRE---GHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~---g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
+|+|||||++|+.+|..|.++ +.+|+|||+++.. .+.+ ....+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----~~~~-------------------~~~~~----------- 46 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PYSG-------------------MLPGM----------- 46 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----cccc-------------------hhhHH-----------
Confidence 489999999999999999643 6899999987532 0000 00000
Q ss_pred ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
.. ......++...+.+.+++.+++ ++. .+|+++..++ + .|.+.++. ++.+|+||+
T Consensus 47 -----~~---------g~~~~~~~~~~~~~~~~~~gv~--~~~-~~v~~id~~~-~--~V~~~~g~-----~~~yD~Lvi 101 (364)
T TIGR03169 47 -----IA---------GHYSLDEIRIDLRRLARQAGAR--FVI-AEATGIDPDR-R--KVLLANRP-----PLSYDVLSL 101 (364)
T ss_pred -----Hh---------eeCCHHHhcccHHHHHHhcCCE--EEE-EEEEEEeccc-C--EEEECCCC-----cccccEEEE
Confidence 00 0001123334455666777876 554 5899998876 3 46665532 589999999
Q ss_pred ccCCCCCCCCCCCC
Q 038157 194 CNGHYTEPRIAEIP 207 (207)
Q Consensus 194 AtG~~s~~~~p~~~ 207 (207)
||| +.+..|.+|
T Consensus 102 AtG--~~~~~~~i~ 113 (364)
T TIGR03169 102 DVG--STTPLSGVE 113 (364)
T ss_pred ccC--CCCCCCCCC
Confidence 999 776666553
No 227
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.06 E-value=6.6e-09 Score=83.11 Aligned_cols=105 Identities=25% Similarity=0.335 Sum_probs=84.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
..+..++|||||+.|+..|..+++.|.+|+|+|+.+.+
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i------------------------------------------ 208 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI------------------------------------------ 208 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC------------------------------------------
Confidence 35678999999999999999999999999999998643
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVV 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV 192 (207)
.+..+ .++.+.+.+.+++.++. ++++++++.+...+ +...+.++++.+. ++.+|.|+
T Consensus 209 ---Lp~~D--------------~ei~~~~~~~l~~~gv~--i~~~~~v~~~~~~~-~~v~v~~~~g~~~---~~~ad~vL 265 (454)
T COG1249 209 ---LPGED--------------PEISKELTKQLEKGGVK--ILLNTKVTAVEKKD-DGVLVTLEDGEGG---TIEADAVL 265 (454)
T ss_pred ---CCcCC--------------HHHHHHHHHHHHhCCeE--EEccceEEEEEecC-CeEEEEEecCCCC---EEEeeEEE
Confidence 11111 48888899999887787 89999999998877 4477888776543 68899999
Q ss_pred EccCCCCCCCCC
Q 038157 193 VCNGHYTEPRIA 204 (207)
Q Consensus 193 ~AtG~~s~~~~p 204 (207)
+|+| -.|.+.
T Consensus 266 vAiG--R~Pn~~ 275 (454)
T COG1249 266 VAIG--RKPNTD 275 (454)
T ss_pred EccC--CccCCC
Confidence 9999 555544
No 228
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.03 E-value=1.5e-08 Score=79.92 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCC-CCCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHY-TEPRI 203 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~-s~~~~ 203 (207)
..+.+.|.+.+++.|.+ ++.+++|+++..++++...|.+.+++ ...+.||.||+|+|+| |..+.
T Consensus 263 ~RL~~aL~~~~~~~Gg~--il~g~~V~~i~~~~~~v~~V~t~~g~---~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGV--MLPGDRVLRAEFEGNRVTRIHTRNHR---DIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred HHHHHHHHHHHHHCCCE--EEECcEEEEEEeeCCeEEEEEecCCc---cceEECCEEEEccCCCcCHHHH
Confidence 46778899999999988 88999999999877344445555532 1369999999999999 77553
No 229
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.02 E-value=4.7e-09 Score=80.85 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=92.9
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCC-CeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceeccccccccccc-CCcce
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREG-HKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTN-LPREV 110 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g-~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 110 (207)
...+|++.||-||+.+++|..|.+.+ .+++.+||.+.+ .|+. ++. -+. ..+...+.+.+... .+...
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHp--Gml------leg-stlQv~FlkDLVTl~~PTs~ 71 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHP--GML------LEG-STLQVPFLKDLVTLVDPTSP 71 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCC--Ccc------cCC-ccccccchhhhccccCCCCc
Confidence 45689999999999999999999874 789999998654 2321 110 000 00111112222111 11111
Q ss_pred eccccccccccC--CCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEe
Q 038157 111 MGFTDYPFTARD--DGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIY 188 (207)
Q Consensus 111 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a 188 (207)
..+.++-..... ........++.+.++.+++.+.+..... ++++.+|++|...+.+.....+....+ ...+.|
T Consensus 72 ySFLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~---~rfg~~V~~i~~~~~d~~~~~~~~t~~--~~~y~a 146 (436)
T COG3486 72 YSFLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPS---LRFGEEVTDISSLDGDAVVRLFVVTAN--GTVYRA 146 (436)
T ss_pred hHHHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCc---cccCCeeccccccCCcceeEEEEEcCC--CcEEEe
Confidence 111111110000 0112356678899999999999999843 899999998844332322221222111 137999
Q ss_pred CEEEEccCCCCCCCCCCC
Q 038157 189 DAVVVCNGHYTEPRIAEI 206 (207)
Q Consensus 189 ~~VV~AtG~~s~~~~p~~ 206 (207)
+.||+++| ..|++|++
T Consensus 147 r~lVlg~G--~~P~IP~~ 162 (436)
T COG3486 147 RNLVLGVG--TQPYIPPC 162 (436)
T ss_pred eeEEEccC--CCcCCChH
Confidence 99999999 99999953
No 230
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.02 E-value=2.1e-09 Score=87.19 Aligned_cols=41 Identities=54% Similarity=0.874 Sum_probs=36.7
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
...+|+|||+|++|+++|..|+++|++|+|+|+.+.+||.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l 182 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLL 182 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcee
Confidence 45799999999999999999999999999999987776554
No 231
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.02 E-value=2.6e-09 Score=92.31 Aligned_cols=42 Identities=50% Similarity=0.666 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
..++|+|||||+||+++|+.|+++|++|+|+|+.+.+||...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 457999999999999999999999999999999887776653
No 232
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.01 E-value=3.6e-09 Score=90.88 Aligned_cols=112 Identities=23% Similarity=0.343 Sum_probs=72.6
Q ss_pred ccEEEECCChhHHHHHHHHHHC----CCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCccee
Q 038157 36 INVAVIGAGAAGLVAARELRRE----GHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~----g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
.+|+|||+|++|+.+|..|.++ +++|+||++.+.+. +... .+...+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r~-----------------~L~~~~~-------- 54 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDRV-----------------HLSSYFS-------- 54 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccCC-----------------cchHhHc--------
Confidence 4899999999999999999764 47999999986541 0000 0000000
Q ss_pred ccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEE
Q 038157 112 GFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAV 191 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~V 191 (207)
.. ...++.....+.+++.+++ ++.+++|+.+..+. ..|++.++ ..+.+|+|
T Consensus 55 ---~~----------------~~~~l~~~~~~~~~~~gI~--~~~g~~V~~Id~~~---~~V~~~~G-----~~i~yD~L 105 (847)
T PRK14989 55 ---HH----------------TAEELSLVREGFYEKHGIK--VLVGERAITINRQE---KVIHSSAG-----RTVFYDKL 105 (847)
T ss_pred ---CC----------------CHHHccCCCHHHHHhCCCE--EEcCCEEEEEeCCC---cEEEECCC-----cEEECCEE
Confidence 00 0012222223445667888 89999999987754 24555442 36899999
Q ss_pred EEccCCCCCCCCCCCC
Q 038157 192 VVCNGHYTEPRIAEIP 207 (207)
Q Consensus 192 V~AtG~~s~~~~p~~~ 207 (207)
|+||| |.+.+|++|
T Consensus 106 VIATG--s~p~~p~ip 119 (847)
T PRK14989 106 IMATG--SYPWIPPIK 119 (847)
T ss_pred EECCC--CCcCCCCCC
Confidence 99999 777777664
No 233
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.8e-09 Score=84.59 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=80.8
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceec-cccccccccc-CCcce
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIH-TSLYSSLRTN-LPREV 110 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~ 110 (207)
...|||+|||||.||+.+|..+++.|.+.+|+-.+-.-=|.+..++.- |-..+...+. .+....+... -....
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsf-----GGigKg~LmrEVDALdGl~~rvcD~s~ 100 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSF-----GGIGKGHLMREVDALDGLCSRVCDQSG 100 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCccc-----CCcccceeeeeehhhcchHhhhhhhhh
Confidence 457999999999999999999999999999998753221222211110 0000101110 0111111110 00111
Q ss_pred ecccccccccc--CCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCC-----cEEEEEEecCCCc
Q 038157 111 MGFTDYPFTAR--DDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENN-----KWKVKSKLRNGDG 182 (207)
Q Consensus 111 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~-----~~~v~~~~~~~~~ 182 (207)
.. +..... .......+....+..+...+++..... +.+ .....|.++...+.+ .-+|.+.++.
T Consensus 101 vq---~k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~---ire~~V~dliv~~~~~~~~~~~gV~l~dgt--- 171 (679)
T KOG2311|consen 101 VQ---YKVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLE---IREGAVADLIVEDPDDGHCVVSGVVLVDGT--- 171 (679)
T ss_pred hh---HHHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcch---hhhhhhhheeeccCCCCceEEEEEEEecCc---
Confidence 11 111111 002222333344555566666655443 333 446677777664332 3457777744
Q ss_pred eeEEEeCEEEEccCCCCC
Q 038157 183 DCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 183 ~~~i~a~~VV~AtG~~s~ 200 (207)
.+.|+.||+.||.|-+
T Consensus 172 --~v~a~~VilTTGTFL~ 187 (679)
T KOG2311|consen 172 --VVYAESVILTTGTFLR 187 (679)
T ss_pred --EeccceEEEeecccee
Confidence 7999999999998754
No 234
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.00 E-value=2.6e-09 Score=91.51 Aligned_cols=111 Identities=17% Similarity=0.271 Sum_probs=71.3
Q ss_pred EEEECCChhHHHHHHHHHHC---CCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 38 VAVIGAGAAGLVAARELRRE---GHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 38 v~IIG~G~aG~~~A~~l~~~---g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
|+|||+|++|+.+|..|.+. +.+|+|||+.+.++ +... .+. .+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~----y~r~-----------------~L~-~~------------ 46 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN----YNRI-----------------LLS-SV------------ 46 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC----cccc-----------------ccc-HH------------
Confidence 68999999999999998874 47999999986542 0000 000 00
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
... .....++.....+.+++.+++ ++.+++|+.+..++ ..|++.++ ..+.+|+||+|
T Consensus 47 ----l~g---------~~~~~~l~~~~~~~~~~~gv~--~~~g~~V~~Id~~~---k~V~~~~g-----~~~~yD~LVlA 103 (785)
T TIGR02374 47 ----LQG---------EADLDDITLNSKDWYEKHGIT--LYTGETVIQIDTDQ---KQVITDAG-----RTLSYDKLILA 103 (785)
T ss_pred ----HCC---------CCCHHHccCCCHHHHHHCCCE--EEcCCeEEEEECCC---CEEEECCC-----cEeeCCEEEEC
Confidence 000 000011211223344667888 89999999998765 34666543 36899999999
Q ss_pred cCCCCCCCCCCCC
Q 038157 195 NGHYTEPRIAEIP 207 (207)
Q Consensus 195 tG~~s~~~~p~~~ 207 (207)
|| +.+..|++|
T Consensus 104 TG--s~p~~p~ip 114 (785)
T TIGR02374 104 TG--SYPFILPIP 114 (785)
T ss_pred CC--CCcCCCCCC
Confidence 99 777777665
No 235
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.99 E-value=1.9e-08 Score=81.64 Aligned_cols=100 Identities=28% Similarity=0.395 Sum_probs=76.0
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||+|.+|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 202 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL------------------------------------------- 202 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------------------------------
Confidence 4689999999999999999999999999999874320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+...+.+.+++.+++ ++.+++|+++..++ +...+++...++ ..++.+|.||+|
T Consensus 203 --~~~--------------d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~~~v~~~~~~~--~~~i~~D~ViiA 261 (463)
T TIGR02053 203 --PRE--------------EPEISAAVEEALAEEGIE--VVTSAQVKAVSVRG-GGKIITVEKPGG--QGEVEADELLVA 261 (463)
T ss_pred --Ccc--------------CHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEcC-CEEEEEEEeCCC--ceEEEeCEEEEe
Confidence 000 025566777778888998 99999999998765 455566543221 257999999999
Q ss_pred cCCC
Q 038157 195 NGHY 198 (207)
Q Consensus 195 tG~~ 198 (207)
+|..
T Consensus 262 ~G~~ 265 (463)
T TIGR02053 262 TGRR 265 (463)
T ss_pred ECCC
Confidence 9943
No 236
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.99 E-value=7.5e-09 Score=77.65 Aligned_cols=58 Identities=14% Similarity=0.069 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCC
Q 038157 136 EVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHY 198 (207)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~ 198 (207)
.+.+.|+...++.|.- +..+.+|.+.+...+.+-.|.+++.. ...++||..|+|+|.+
T Consensus 259 Rl~~~L~~~f~~~Gg~--~m~Gd~V~~a~~~~~~v~~i~trn~~---diP~~a~~~VLAsGsf 316 (421)
T COG3075 259 RLHNQLQRQFEQLGGL--WMPGDEVKKATCKGGRVTEIYTRNHA---DIPLRADFYVLASGSF 316 (421)
T ss_pred hHHHHHHHHHHHcCce--EecCCceeeeeeeCCeEEEEEecccc---cCCCChhHeeeecccc
Confidence 5567788888888876 88899999999987455567777655 3478999999999975
No 237
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.99 E-value=2.7e-08 Score=79.16 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEE-EEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 136 EVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWK-VKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~-v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
.+.+.|.+.+++.|++ ++.+++|+++..++ +.+. +...++. ...+.||.||+|+|.+...
T Consensus 260 rL~~aL~~~l~~~Gv~--I~~g~~V~~v~~~~-~~V~~v~~~~g~---~~~i~AD~VVLAtGrf~s~ 320 (422)
T PRK05329 260 RLQNALRRAFERLGGR--IMPGDEVLGAEFEG-GRVTAVWTRNHG---DIPLRARHFVLATGSFFSG 320 (422)
T ss_pred HHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CEEEEEEeeCCc---eEEEECCEEEEeCCCcccC
Confidence 5677888888888988 99999999998876 4333 3322222 3578999999999987554
No 238
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.99 E-value=1e-08 Score=83.73 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGG 72 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg 72 (207)
+||+|||+|++|+.+|+.|+++|.+|++||+....|+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999866553
No 239
>PRK02106 choline dehydrogenase; Validated
Probab=98.99 E-value=3.2e-09 Score=87.97 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCC
Q 038157 139 RYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 139 ~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
.+|....++.+++ ++.++.|++|..+++...+|.+.+..+ ....+.++.||+|+|++..|.+
T Consensus 205 ~~l~~a~~~~nl~--i~~~a~V~rI~~~~~~a~GV~~~~~~~-~~~~~~ak~VILaaGai~TP~L 266 (560)
T PRK02106 205 AYLDPALKRPNLT--IVTHALTDRILFEGKRAVGVEYERGGG-RETARARREVILSAGAINSPQL 266 (560)
T ss_pred HhhccccCCCCcE--EEcCCEEEEEEEeCCeEEEEEEEeCCc-EEEEEeeeeEEEccCCCCCHHH
Confidence 3444444455677 999999999998864456677766432 2345689999999999877654
No 240
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.98 E-value=1.5e-08 Score=80.12 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=77.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||+|..|+.+|..|++.|.+|+++++.+.+...
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------------- 179 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------------------------------------- 179 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch-----------------------------------------
Confidence 358999999999999999999999999999986432000
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
.. ...+...+.+.+++.+++ ++++++|+++..++ +.+.+.+.++ .++.+|.||+|
T Consensus 180 ---~~--------------~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~i~~D~vI~a 234 (377)
T PRK04965 180 ---LM--------------PPEVSSRLQHRLTEMGVH--LLLKSQLQGLEKTD-SGIRATLDSG-----RSIEVDAVIAA 234 (377)
T ss_pred ---hC--------------CHHHHHHHHHHHHhCCCE--EEECCeEEEEEccC-CEEEEEEcCC-----cEEECCEEEEC
Confidence 00 024556777778888988 99999999998765 5667776553 36999999999
Q ss_pred cCCCCC
Q 038157 195 NGHYTE 200 (207)
Q Consensus 195 tG~~s~ 200 (207)
+|..+.
T Consensus 235 ~G~~p~ 240 (377)
T PRK04965 235 AGLRPN 240 (377)
T ss_pred cCCCcc
Confidence 996543
No 241
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.4e-09 Score=73.18 Aligned_cols=117 Identities=22% Similarity=0.272 Sum_probs=82.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeC---C-CCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKS---N-RIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPR 108 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~---~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
.+.-+|+|||+||++-.+|+.+++...|-+|+|-- . .+||...-.
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT------------------------------- 54 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT------------------------------- 54 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee-------------------------------
Confidence 34569999999999999999999999999999952 1 123332211
Q ss_pred ceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEe
Q 038157 109 EVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIY 188 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a 188 (207)
....+++-.+. -....++++.+.+.+.++|.+ .+-..|.++.... ..+.+.+.. +.+.|
T Consensus 55 --T~veNfPGFPd---------gi~G~~l~d~mrkqs~r~Gt~---i~tEtVskv~~ss-kpF~l~td~------~~v~~ 113 (322)
T KOG0404|consen 55 --TDVENFPGFPD---------GITGPELMDKMRKQSERFGTE---IITETVSKVDLSS-KPFKLWTDA------RPVTA 113 (322)
T ss_pred --eccccCCCCCc---------ccccHHHHHHHHHHHHhhcce---eeeeehhhccccC-CCeEEEecC------Cceee
Confidence 01111211110 123358999999999999985 5566788888887 778887754 46999
Q ss_pred CEEEEccCCCCCC
Q 038157 189 DAVVVCNGHYTEP 201 (207)
Q Consensus 189 ~~VV~AtG~~s~~ 201 (207)
|.||+|||+-++.
T Consensus 114 ~avI~atGAsAkR 126 (322)
T KOG0404|consen 114 DAVILATGASAKR 126 (322)
T ss_pred eeEEEecccceee
Confidence 9999999966554
No 242
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.98 E-value=2.1e-08 Score=81.35 Aligned_cols=101 Identities=22% Similarity=0.242 Sum_probs=77.6
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||+|.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 208 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL------------------------------------------- 208 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------------------
Confidence 4689999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.+++ ++.+++|+++..++ +.+.+.+.++. +.+.+.+|.||+|
T Consensus 209 --~~~--------------~~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~gg--~~~~i~~D~vi~a 267 (462)
T PRK06416 209 --PGE--------------DKEISKLAERALKKRGIK--IKTGAKAKKVEQTD-DGVTVTLEDGG--KEETLEADYVLVA 267 (462)
T ss_pred --CcC--------------CHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEEeCC--eeEEEEeCEEEEe
Confidence 000 025667777888888988 99999999998766 55666665532 1357899999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 268 ~G~~p 272 (462)
T PRK06416 268 VGRRP 272 (462)
T ss_pred eCCcc
Confidence 99543
No 243
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.98 E-value=2.1e-08 Score=81.58 Aligned_cols=100 Identities=24% Similarity=0.327 Sum_probs=74.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||||++|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il------------------------------------------- 216 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL------------------------------------------- 216 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------------------
Confidence 4699999999999999999999999999999875320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEee-cCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLM-ENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~-~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
+.. ...+.+.+.+.+++.|++ ++.+++|+++... +++...+...++. ...+.+|.||+
T Consensus 217 --~~~--------------~~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~~~~~~~g~---~~~i~~D~vi~ 275 (472)
T PRK05976 217 --PTE--------------DAELSKEVARLLKKLGVR--VVTGAKVLGLTLKKDGGVLIVAEHNGE---EKTLEADKVLV 275 (472)
T ss_pred --CcC--------------CHHHHHHHHHHHHhcCCE--EEeCcEEEEEEEecCCCEEEEEEeCCc---eEEEEeCEEEE
Confidence 000 135667777778888998 9999999999762 2133233333322 34799999999
Q ss_pred ccCCC
Q 038157 194 CNGHY 198 (207)
Q Consensus 194 AtG~~ 198 (207)
|+|..
T Consensus 276 a~G~~ 280 (472)
T PRK05976 276 SVGRR 280 (472)
T ss_pred eeCCc
Confidence 99943
No 244
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.98 E-value=3.1e-08 Score=80.40 Aligned_cols=102 Identities=26% Similarity=0.322 Sum_probs=76.5
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||+|..|+.+|..+++.|.+|+|+|+.+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il------------------------------------------- 210 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC------------------------------------------- 210 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------------------
Confidence 4689999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.+++ ++.+++|+++..++ +.+.+.+.+..++..+.+.+|.||+|
T Consensus 211 --~~~--------------d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~vi~a 271 (466)
T PRK06115 211 --PGT--------------DTETAKTLQKALTKQGMK--FKLGSKVTGATAGA-DGVSLTLEPAAGGAAETLQADYVLVA 271 (466)
T ss_pred --CCC--------------CHHHHHHHHHHHHhcCCE--EEECcEEEEEEEcC-CeEEEEEEEcCCCceeEEEeCEEEEc
Confidence 000 024566777778888998 99999999998765 45555554322222357999999999
Q ss_pred cCCC
Q 038157 195 NGHY 198 (207)
Q Consensus 195 tG~~ 198 (207)
+|..
T Consensus 272 ~G~~ 275 (466)
T PRK06115 272 IGRR 275 (466)
T ss_pred cCCc
Confidence 9954
No 245
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.98 E-value=2.1e-08 Score=81.38 Aligned_cols=100 Identities=23% Similarity=0.273 Sum_probs=76.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||||.+|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 206 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL------------------------------------------- 206 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------------------
Confidence 4689999999999999999999999999999874320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.+++ ++.+++|+++..++ +.+.+...++. ...+.+|.||+|
T Consensus 207 --~~~--------------~~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~g~---~~~i~~D~vi~a 264 (461)
T TIGR01350 207 --PGE--------------DAEVSKVVAKALKKKGVK--ILTNTKVTAVEKND-DQVVYENKGGE---TETLTGEKVLVA 264 (461)
T ss_pred --CCC--------------CHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEeCCc---EEEEEeCEEEEe
Confidence 000 025566677778888988 99999999998765 55555554332 246899999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 265 ~G~~p 269 (461)
T TIGR01350 265 VGRKP 269 (461)
T ss_pred cCCcc
Confidence 99543
No 246
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.97 E-value=2.1e-08 Score=78.49 Aligned_cols=43 Identities=42% Similarity=0.716 Sum_probs=38.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
+...||||||+|.+||.+|+.|.+.|++|.|+|..+.+||.+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeE
Confidence 3458999999999999999999999999999999988887643
No 247
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.96 E-value=3.7e-09 Score=89.02 Aligned_cols=42 Identities=43% Similarity=0.646 Sum_probs=37.8
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
...+|+|||+|++|+++|..|++.|++|+|+|+.+.+||.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 457999999999999999999999999999999887776654
No 248
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.96 E-value=3.8e-08 Score=79.91 Aligned_cols=101 Identities=22% Similarity=0.255 Sum_probs=76.0
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||+|..|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l------------------------------------------- 208 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL------------------------------------------- 208 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------------------
Confidence 4689999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+...+.+.+++.+++ ++.+++|+++..++ +.+.+.+...+ ++..++.+|.||+|
T Consensus 209 --~~~--------------d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~-g~~~~i~~D~vi~a 268 (466)
T PRK07818 209 --PNE--------------DAEVSKEIAKQYKKLGVK--ILTGTKVESIDDNG-SKVTVTVSKKD-GKAQELEADKVLQA 268 (466)
T ss_pred --Ccc--------------CHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CeEEEEEEecC-CCeEEEEeCEEEEC
Confidence 000 025666777888888999 99999999998765 55556554211 11347999999999
Q ss_pred cCCC
Q 038157 195 NGHY 198 (207)
Q Consensus 195 tG~~ 198 (207)
+|..
T Consensus 269 ~G~~ 272 (466)
T PRK07818 269 IGFA 272 (466)
T ss_pred cCcc
Confidence 9943
No 249
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.96 E-value=5.2e-09 Score=84.80 Aligned_cols=41 Identities=49% Similarity=0.707 Sum_probs=37.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
...+|+|||+|++|+++|..|+++|++|+|+|+.+.+||.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l 180 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLL 180 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCcee
Confidence 45799999999999999999999999999999988776654
No 250
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.95 E-value=2.9e-08 Score=80.49 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=76.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||+|..|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL------------------------------------------- 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------------------
Confidence 4689999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.+++ ++.+++|+++..++ +.+.+++.++ ..+.+|.||+|
T Consensus 212 --~~~--------------d~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~g-----~~i~~D~vi~a 267 (461)
T PRK05249 212 --SFL--------------DDEISDALSYHLRDSGVT--IRHNEEVEKVEGGD-DGVIVHLKSG-----KKIKADCLLYA 267 (461)
T ss_pred --CcC--------------CHHHHHHHHHHHHHcCCE--EEECCEEEEEEEeC-CeEEEEECCC-----CEEEeCEEEEe
Confidence 000 125666777778888998 99999999998765 5555655432 36899999999
Q ss_pred cCCCCC
Q 038157 195 NGHYTE 200 (207)
Q Consensus 195 tG~~s~ 200 (207)
+|....
T Consensus 268 ~G~~p~ 273 (461)
T PRK05249 268 NGRTGN 273 (461)
T ss_pred ecCCcc
Confidence 996543
No 251
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.95 E-value=4.3e-09 Score=88.46 Aligned_cols=42 Identities=43% Similarity=0.676 Sum_probs=37.8
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
...+|+|||+|++|+++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 357999999999999999999999999999999888777654
No 252
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.94 E-value=9.3e-09 Score=81.65 Aligned_cols=37 Identities=43% Similarity=0.797 Sum_probs=34.4
Q ss_pred cEEEECCChhHHHHHHHHHHCC--CeEEEEeeCCCCCce
Q 038157 37 NVAVIGAGAAGLVAARELRREG--HKVVVLEKSNRIGGT 73 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g--~~v~liE~~~~~gg~ 73 (207)
.|+|||||++||++|+.|++.+ ++|+|+|+++..||-
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL 40 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCce
Confidence 6899999999999999999998 999999999888764
No 253
>PRK06370 mercuric reductase; Validated
Probab=98.94 E-value=4.6e-08 Score=79.41 Aligned_cols=100 Identities=27% Similarity=0.379 Sum_probs=75.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||+|..|+.+|..|++.|.+|+|+++.+.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l------------------------------------------- 207 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL------------------------------------------- 207 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------------------------------
Confidence 4689999999999999999999999999999875320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.|++ ++++++|+++..++ +...+.+...++ ...+.+|.||+|
T Consensus 208 --~~~--------------~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~~~~--~~~i~~D~Vi~A 266 (463)
T PRK06370 208 --PRE--------------DEDVAAAVREILEREGID--VRLNAECIRVERDG-DGIAVGLDCNGG--APEITGSHILVA 266 (463)
T ss_pred --ccc--------------CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEEeCCC--ceEEEeCEEEEC
Confidence 000 025566777778888998 99999999998765 444555543221 246899999999
Q ss_pred cCCC
Q 038157 195 NGHY 198 (207)
Q Consensus 195 tG~~ 198 (207)
+|..
T Consensus 267 ~G~~ 270 (463)
T PRK06370 267 VGRV 270 (463)
T ss_pred cCCC
Confidence 9944
No 254
>PRK06116 glutathione reductase; Validated
Probab=98.92 E-value=4.1e-08 Score=79.40 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=75.8
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+|+|||+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------------------------------- 203 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL------------------------------------------- 203 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-------------------------------------------
Confidence 4689999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.+++ ++++++|.++..++++.+.+.+.++ ..+.+|.||+|
T Consensus 204 --~~~--------------~~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~g~~~v~~~~g-----~~i~~D~Vv~a 260 (450)
T PRK06116 204 --RGF--------------DPDIRETLVEEMEKKGIR--LHTNAVPKAVEKNADGSLTLTLEDG-----ETLTVDCLIWA 260 (450)
T ss_pred --ccc--------------CHHHHHHHHHHHHHCCcE--EECCCEEEEEEEcCCceEEEEEcCC-----cEEEeCEEEEe
Confidence 000 025666777788888998 9999999999876534356666543 36899999999
Q ss_pred cCCC
Q 038157 195 NGHY 198 (207)
Q Consensus 195 tG~~ 198 (207)
+|..
T Consensus 261 ~G~~ 264 (450)
T PRK06116 261 IGRE 264 (450)
T ss_pred eCCC
Confidence 9954
No 255
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.91 E-value=6.2e-08 Score=78.86 Aligned_cols=101 Identities=22% Similarity=0.266 Sum_probs=76.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+..|+|||+|..|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 219 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL------------------------------------------- 219 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------------------
Confidence 4699999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+. ....+...+.+.+++.+++ ++.+++|+++..++ +...+.+.++++. ...+.+|.||+|
T Consensus 220 --~~--------------~d~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~~~g~-~~~i~~D~vl~a 279 (475)
T PRK06327 220 --AA--------------ADEQVAKEAAKAFTKQGLD--IHLGVKIGEIKTGG-KGVSVAYTDADGE-AQTLEVDKLIVS 279 (475)
T ss_pred --Cc--------------CCHHHHHHHHHHHHHcCcE--EEeCcEEEEEEEcC-CEEEEEEEeCCCc-eeEEEcCEEEEc
Confidence 00 0135666677777788988 99999999998765 5556666554222 357899999999
Q ss_pred cCCC
Q 038157 195 NGHY 198 (207)
Q Consensus 195 tG~~ 198 (207)
+|..
T Consensus 280 ~G~~ 283 (475)
T PRK06327 280 IGRV 283 (475)
T ss_pred cCCc
Confidence 9944
No 256
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.91 E-value=4.2e-08 Score=79.07 Aligned_cols=96 Identities=24% Similarity=0.314 Sum_probs=72.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+|+|||+|.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 193 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL------------------------------------------- 193 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------------------
Confidence 4589999999999999999999999999999975320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+...+.+.+++.|++ ++.+++|+++..++ +.+.+.. + ..++.+|.||+|
T Consensus 194 --~~~--------------~~~~~~~~~~~l~~~GI~--i~~~~~V~~i~~~~-~~v~v~~-~-----g~~i~~D~viva 248 (438)
T PRK07251 194 --PRE--------------EPSVAALAKQYMEEDGIT--FLLNAHTTEVKNDG-DQVLVVT-E-----DETYRFDALLYA 248 (438)
T ss_pred --CCC--------------CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEecC-CEEEEEE-C-----CeEEEcCEEEEe
Confidence 000 024556677778888998 99999999998754 4443432 2 136899999999
Q ss_pred cCCC
Q 038157 195 NGHY 198 (207)
Q Consensus 195 tG~~ 198 (207)
+|..
T Consensus 249 ~G~~ 252 (438)
T PRK07251 249 TGRK 252 (438)
T ss_pred eCCC
Confidence 9954
No 257
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.90 E-value=1e-08 Score=83.50 Aligned_cols=40 Identities=50% Similarity=0.827 Sum_probs=36.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
..+|+|||+|++|+.+|..|++.|++|+|+|+.+.+||..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l 182 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL 182 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee
Confidence 4699999999999999999999999999999987776544
No 258
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.90 E-value=6.1e-08 Score=78.55 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=73.6
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||||++|+.+|..|++.|.+|+|+++.+.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll------------------------------------------- 206 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL------------------------------------------- 206 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------------------
Confidence 4589999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+. ...++.+.+.+.+++.+++ ++++++|+++..++ ..+. +.... +..++.+|.||+|
T Consensus 207 --~~--------------~d~e~~~~l~~~L~~~GI~--i~~~~~V~~i~~~~-~~v~--~~~~g--~~~~i~~D~vivA 263 (458)
T PRK06912 207 --PG--------------EDEDIAHILREKLENDGVK--IFTGAALKGLNSYK-KQAL--FEYEG--SIQEVNAEFVLVS 263 (458)
T ss_pred --cc--------------ccHHHHHHHHHHHHHCCCE--EEECCEEEEEEEcC-CEEE--EEECC--ceEEEEeCEEEEe
Confidence 00 0135667777888888998 99999999997654 3333 33211 1246899999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 264 ~G~~p 268 (458)
T PRK06912 264 VGRKP 268 (458)
T ss_pred cCCcc
Confidence 99543
No 259
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.89 E-value=1.4e-08 Score=76.52 Aligned_cols=41 Identities=44% Similarity=0.740 Sum_probs=35.6
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC--CCce
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNR--IGGT 73 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~--~gg~ 73 (207)
...+||+|||+|.+|+.+|..|+..|.+|+|+|+... .||.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 3468999999999999999999999999999998643 4554
No 260
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.89 E-value=1.2e-08 Score=79.77 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=88.6
Q ss_pred CCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCccee------cccccccccccCCcceecccc-ccccccCCCCCCCCC
Q 038157 58 GHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVI------HTSLYSSLRTNLPREVMGFTD-YPFTARDDGSGDPRR 130 (207)
Q Consensus 58 g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 130 (207)
|.+|+|+||...+|.-+..+++.+|+..+..+..... .......+..+.+.+...+.. .+.... .....+.
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~--~e~~grv 78 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETF--VGSSGRV 78 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceE--ECCCCEE
Confidence 5789999999999999999999888887754321100 111222233333333333321 111111 1223456
Q ss_pred CC---ChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCC
Q 038157 131 FP---GHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 131 ~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
|| ....+.+.|...+++.+++ ++++++|+++ ++ +.+.+.+..+. ..+.||.||+|||+.|.|..
T Consensus 79 fP~S~~A~sVv~~L~~~l~~~gV~--i~~~~~V~~i--~~-~~~~v~~~~~~----~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 79 FPVEMKAAPLLRAWLKRLAEQGVQ--FHTRHRWIGW--QG-GTLRFETPDGQ----STIEADAVVLALGGASWSQL 145 (376)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEE--eC-CcEEEEECCCc----eEEecCEEEEcCCCcccccc
Confidence 65 4578899999999999999 9999999999 33 45777774322 35899999999999876654
No 261
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.89 E-value=5.7e-08 Score=78.50 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=76.6
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||||..|+.+|..|++.|.+|+|+++.+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il------------------------------------------- 202 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL------------------------------------------- 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------------------
Confidence 4699999999999999999999999999999875321
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.|++ ++.+++|+++..+.++...+.+.++. ..+.+|.||+|
T Consensus 203 --~~~--------------d~~~~~~~~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~~i~~D~vi~a 260 (450)
T TIGR01421 203 --RSF--------------DSMISETITEEYEKEGIN--VHKLSKPVKVEKTVEGKLVIHFEDGK----SIDDVDELIWA 260 (450)
T ss_pred --ccc--------------CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEeCCceEEEEECCCc----EEEEcCEEEEe
Confidence 000 025667778888888998 99999999998754233556554431 46899999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 261 ~G~~p 265 (450)
T TIGR01421 261 IGRKP 265 (450)
T ss_pred eCCCc
Confidence 99543
No 262
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.89 E-value=4.5e-08 Score=77.88 Aligned_cols=98 Identities=22% Similarity=0.243 Sum_probs=74.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||+|..|+.+|..|++.|.+|+|+|+.+.+.+..
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 183 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN---------------------------------------- 183 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh----------------------------------------
Confidence 3589999999999999999999999999999865321000
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
....+.+.+.+.+++.+++ ++++++|+++.. + +.+.+.+.++ ..+.+|.||+|
T Consensus 184 ------------------~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~-~-~~~~v~l~~g-----~~i~aD~Vv~a 236 (396)
T PRK09754 184 ------------------APPPVQRYLLQRHQQAGVR--ILLNNAIEHVVD-G-EKVELTLQSG-----ETLQADVVIYG 236 (396)
T ss_pred ------------------cCHHHHHHHHHHHHHCCCE--EEeCCeeEEEEc-C-CEEEEEECCC-----CEEECCEEEEC
Confidence 0125566777788888998 999999999876 3 4455666553 36899999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 237 ~G~~p 241 (396)
T PRK09754 237 IGISA 241 (396)
T ss_pred CCCCh
Confidence 99543
No 263
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.88 E-value=3.1e-09 Score=86.01 Aligned_cols=44 Identities=48% Similarity=0.648 Sum_probs=40.3
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVY 76 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~ 76 (207)
..+.+|||||||+||++||.+|.+.|.+|+|+|..+.+||....
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEE
Confidence 45689999999999999999999999999999999999987653
No 264
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.87 E-value=8.2e-08 Score=78.05 Aligned_cols=101 Identities=22% Similarity=0.332 Sum_probs=75.3
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||+|..|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il------------------------------------------- 210 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI------------------------------------------- 210 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------------------
Confidence 3689999999999999999999999999999875320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++. ++ ++.+++|+.+..++ +...+.+.++++. ..++.+|.||+|
T Consensus 211 --~~~--------------d~~~~~~~~~~l~~~-v~--i~~~~~v~~i~~~~-~~~~v~~~~~~~~-~~~i~~D~vi~a 269 (471)
T PRK06467 211 --PAA--------------DKDIVKVFTKRIKKQ-FN--IMLETKVTAVEAKE-DGIYVTMEGKKAP-AEPQRYDAVLVA 269 (471)
T ss_pred --CcC--------------CHHHHHHHHHHHhhc-eE--EEcCCEEEEEEEcC-CEEEEEEEeCCCc-ceEEEeCEEEEe
Confidence 000 025566677777666 77 99999999998765 5556666543321 356999999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 270 ~G~~p 274 (471)
T PRK06467 270 VGRVP 274 (471)
T ss_pred ecccc
Confidence 99543
No 265
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.85 E-value=1.3e-08 Score=85.48 Aligned_cols=42 Identities=48% Similarity=0.645 Sum_probs=37.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
...+|+|||+|++|+++|..|++.|++|+|+|+.+.+||.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 457999999999999999999999999999999988776654
No 266
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.85 E-value=2.6e-08 Score=79.85 Aligned_cols=42 Identities=31% Similarity=0.398 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHH-HCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELR-REGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~-~~g~~v~liE~~~~~gg~~~ 75 (207)
.+..|+||||||||+.+|..|+ +.|++|.|+||.+.+||.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR 80 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIR 80 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEE
Confidence 3568999999999999999765 57999999999999987765
No 267
>PRK13984 putative oxidoreductase; Provisional
Probab=98.83 E-value=2.1e-08 Score=83.91 Aligned_cols=42 Identities=38% Similarity=0.518 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
...+|+|||+|++|+++|..|+++|++|+|+|+.+.+||.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 457999999999999999999999999999999887766543
No 268
>PLN02507 glutathione reductase
Probab=98.83 E-value=1.4e-07 Score=77.11 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=76.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||+|..|+.+|..|++.|.+|+|+++.+.+.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l------------------------------------------- 239 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL------------------------------------------- 239 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------------------
Confidence 4689999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.+++ ++.+++|+++..++ +...+.+.++ .++.+|.||+|
T Consensus 240 --~~~--------------d~~~~~~l~~~l~~~GI~--i~~~~~V~~i~~~~-~~~~v~~~~g-----~~i~~D~vl~a 295 (499)
T PLN02507 240 --RGF--------------DDEMRAVVARNLEGRGIN--LHPRTNLTQLTKTE-GGIKVITDHG-----EEFVADVVLFA 295 (499)
T ss_pred --ccc--------------CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CeEEEEECCC-----cEEEcCEEEEe
Confidence 000 135667778888888998 99999999998765 4455554332 36999999999
Q ss_pred cCCCCC
Q 038157 195 NGHYTE 200 (207)
Q Consensus 195 tG~~s~ 200 (207)
+|....
T Consensus 296 ~G~~pn 301 (499)
T PLN02507 296 TGRAPN 301 (499)
T ss_pred ecCCCC
Confidence 995433
No 269
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.82 E-value=1.5e-07 Score=76.11 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=75.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||+|..|+.+|..+++.|.+|+++++.+.+.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l------------------------------------------- 202 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL------------------------------------------- 202 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------------------
Confidence 4589999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.+++ ++.+++|+++..++ +...+.+.++ ..+.+|.||+|
T Consensus 203 --~~~--------------d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~i~~D~viva 258 (446)
T TIGR01424 203 --RGF--------------DDDMRALLARNMEGRGIR--IHPQTSLTSITKTD-DGLKVTLSHG-----EEIVADVVLFA 258 (446)
T ss_pred --ccc--------------CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeEEEEEcCC-----cEeecCEEEEe
Confidence 000 025666777778888998 99999999998765 4455655442 36899999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 259 ~G~~p 263 (446)
T TIGR01424 259 TGRSP 263 (446)
T ss_pred eCCCc
Confidence 99543
No 270
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.82 E-value=3.9e-08 Score=77.94 Aligned_cols=35 Identities=37% Similarity=0.417 Sum_probs=32.3
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIG 71 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~g 71 (207)
||+|||||++|+.+|+.|+++|++|+|+|+.+..+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 89999999999999999999999999999876543
No 271
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.81 E-value=1.7e-07 Score=76.06 Aligned_cols=99 Identities=20% Similarity=0.193 Sum_probs=75.8
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 213 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL------------------------------------------- 213 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-------------------------------------------
Confidence 3589999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+...+.+.+++.|++ ++.+++|+++..++ +.+.+.+.++ ..+.+|.||+|
T Consensus 214 --~~~--------------d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~g-----~~l~~D~vl~a 269 (466)
T PRK07845 214 --PGE--------------DADAAEVLEEVFARRGMT--VLKRSRAESVERTG-DGVVVTLTDG-----RTVEGSHALMA 269 (466)
T ss_pred --CCC--------------CHHHHHHHHHHHHHCCcE--EEcCCEEEEEEEeC-CEEEEEECCC-----cEEEecEEEEe
Confidence 000 024566778888888998 99999999998665 4455555442 36899999999
Q ss_pred cCCCCC
Q 038157 195 NGHYTE 200 (207)
Q Consensus 195 tG~~s~ 200 (207)
+|....
T Consensus 270 ~G~~pn 275 (466)
T PRK07845 270 VGSVPN 275 (466)
T ss_pred ecCCcC
Confidence 995433
No 272
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.81 E-value=6.3e-08 Score=79.75 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCC-ceeEEEeCEEEEccCCCCCCCC
Q 038157 139 RYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGD-GDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 139 ~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~-~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
.+|....+..+++ +..++.|+.+..+.+..+.+.+...... ....+.++.||+|+|+.-.|.+
T Consensus 207 a~l~~a~~~~nl~--v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~L 270 (542)
T COG2303 207 AYLKPALKRPNLT--LLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKL 270 (542)
T ss_pred hcchhHhcCCceE--EecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHH
Confidence 4455555566677 9999999999999866667777654432 2456678999999998766543
No 273
>PRK07208 hypothetical protein; Provisional
Probab=98.81 E-value=7.8e-09 Score=84.21 Aligned_cols=42 Identities=45% Similarity=0.607 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
...||+|||||++|+++|+.|+++|++|+|+|+.+.+||.+.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999998888643
No 274
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.80 E-value=1.4e-07 Score=76.17 Aligned_cols=98 Identities=20% Similarity=0.351 Sum_probs=74.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||+|..|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 194 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL------------------------------------------- 194 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------------------
Confidence 3589999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.|++ ++++++|+++..++ +.+.+...+ ..+.+|.||+|
T Consensus 195 --~~~--------------~~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~-~~v~v~~~~------g~i~~D~vl~a 249 (441)
T PRK08010 195 --PRE--------------DRDIADNIATILRDQGVD--IILNAHVERISHHE-NQVQVHSEH------AQLAVDALLIA 249 (441)
T ss_pred --CCc--------------CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEcC------CeEEeCEEEEe
Confidence 000 025566778888889998 99999999998765 444444322 24889999999
Q ss_pred cCCCCC
Q 038157 195 NGHYTE 200 (207)
Q Consensus 195 tG~~s~ 200 (207)
+|....
T Consensus 250 ~G~~pn 255 (441)
T PRK08010 250 SGRQPA 255 (441)
T ss_pred ecCCcC
Confidence 996554
No 275
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.80 E-value=3e-08 Score=84.98 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=35.1
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGG 72 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg 72 (207)
....+|+|||+|+||+++|+.|+++|++|+++|+....|+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 3567999999999999999999999999999999755443
No 276
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.80 E-value=3e-08 Score=81.78 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCC
Q 038157 137 VLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 137 ~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
...+|....++.+++ ++.+++|++|..+++...+|.+.+.. .....+.++.||+|+|+...|.+
T Consensus 196 ~~~~l~~a~~r~nl~--i~~~~~V~rI~~~~~ra~GV~~~~~~-~~~~~~~ak~VIlaAGai~SP~L 259 (532)
T TIGR01810 196 ARAYLHPAMKRPNLE--VQTRAFVTKINFEGNRATGVEFKKGG-RKEHTEANKEVILSAGAINSPQL 259 (532)
T ss_pred HHHHhhhhccCCCeE--EEeCCEEEEEEecCCeEEEEEEEeCC-cEEEEEEeeeEEEccCCCCCHHH
Confidence 334555444455677 99999999999876455667776542 21234588999999998766543
No 277
>PRK07846 mycothione reductase; Reviewed
Probab=98.79 E-value=1.9e-07 Score=75.56 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=70.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||+|..|+.+|..|++.|.+|+|+++.+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll------------------------------------------- 202 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL------------------------------------------- 202 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------------------
Confidence 4699999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ..++.+.+.+.. +.+++ ++.+++|+++..++ +...+.+.++ ..+.+|.||+|
T Consensus 203 --~~~--------------d~~~~~~l~~l~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g-----~~i~~D~vl~a 257 (451)
T PRK07846 203 --RHL--------------DDDISERFTELA-SKRWD--VRLGRNVVGVSQDG-SGVTLRLDDG-----STVEADVLLVA 257 (451)
T ss_pred --ccc--------------CHHHHHHHHHHH-hcCeE--EEeCCEEEEEEEcC-CEEEEEECCC-----cEeecCEEEEE
Confidence 000 023444454443 35677 89999999998765 4455555432 36899999999
Q ss_pred cCCCCC
Q 038157 195 NGHYTE 200 (207)
Q Consensus 195 tG~~s~ 200 (207)
+|....
T Consensus 258 ~G~~pn 263 (451)
T PRK07846 258 TGRVPN 263 (451)
T ss_pred ECCccC
Confidence 995443
No 278
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.79 E-value=6.7e-08 Score=75.84 Aligned_cols=112 Identities=22% Similarity=0.308 Sum_probs=75.4
Q ss_pred cccEEEECCChhHHHHHHHHHHCC--CeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 35 SINVAVIGAGAAGLVAARELRREG--HKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g--~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
+.+|+|||||.+|+.+|..|.++. .+|+||||.+..- +...+++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl----------------------~~plL~e------------ 48 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL----------------------FTPLLYE------------ 48 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc----------------------cchhhhh------------
Confidence 468999999999999999999974 8999999975420 0000000
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcC-CceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFG-IDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAV 191 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~V 191 (207)
..........+..-+.+.++..+ + -+...+|++++.++ + .|++.++ ..+.+|++
T Consensus 49 --------------va~g~l~~~~i~~p~~~~~~~~~~v---~~~~~~V~~ID~~~-k--~V~~~~~-----~~i~YD~L 103 (405)
T COG1252 49 --------------VATGTLSESEIAIPLRALLRKSGNV---QFVQGEVTDIDRDA-K--KVTLADL-----GEISYDYL 103 (405)
T ss_pred --------------hhcCCCChhheeccHHHHhcccCce---EEEEEEEEEEcccC-C--EEEeCCC-----ccccccEE
Confidence 01111222344455666666544 4 46688999999987 4 4666551 36999999
Q ss_pred EEccCCCCCCCCCCCC
Q 038157 192 VVCNGHYTEPRIAEIP 207 (207)
Q Consensus 192 V~AtG~~s~~~~p~~~ 207 (207)
|+|.| |.+..+++|
T Consensus 104 VvalG--s~~~~fgi~ 117 (405)
T COG1252 104 VVALG--SETNYFGIP 117 (405)
T ss_pred EEecC--CcCCcCCCC
Confidence 99999 776666554
No 279
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.79 E-value=4.7e-08 Score=76.68 Aligned_cols=98 Identities=24% Similarity=0.404 Sum_probs=77.9
Q ss_pred ccEEEECCChhHHHHHHHHHHC-------------CCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccc
Q 038157 36 INVAVIGAGAAGLVAARELRRE-------------GHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSL 102 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~-------------g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (207)
-+|+|+|||+.|..+|..|+++ ..+|.|+|+.+.+
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I-------------------------------- 203 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI-------------------------------- 203 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh--------------------------------
Confidence 5799999999999999999863 1388888887543
Q ss_pred cccCCcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCc
Q 038157 103 RTNLPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDG 182 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~ 182 (207)
.+... ..+..+.++.+++.|++ +++++.|++++.+. |++.+++
T Consensus 204 -------------Lp~~~--------------~~l~~~a~~~L~~~GV~--v~l~~~Vt~v~~~~-----v~~~~g~--- 246 (405)
T COG1252 204 -------------LPMFP--------------PKLSKYAERALEKLGVE--VLLGTPVTEVTPDG-----VTLKDGE--- 246 (405)
T ss_pred -------------ccCCC--------------HHHHHHHHHHHHHCCCE--EEcCCceEEECCCc-----EEEccCC---
Confidence 11111 47888899999999999 99999999998876 7776654
Q ss_pred eeEEEeCEEEEccCCCCCCCC
Q 038157 183 DCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 183 ~~~i~a~~VV~AtG~~s~~~~ 203 (207)
.+|.++.+|.|+|....+..
T Consensus 247 -~~I~~~tvvWaaGv~a~~~~ 266 (405)
T COG1252 247 -EEIPADTVVWAAGVRASPLL 266 (405)
T ss_pred -eeEecCEEEEcCCCcCChhh
Confidence 25999999999998776654
No 280
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.79 E-value=6.7e-08 Score=74.65 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=80.5
Q ss_pred cCcccEEEECCChhHHHHHHHHHHC----CCeEEEEeeCCCC-CceeeeCCCCCCCc-CCCCCCcceecc--cccccccc
Q 038157 33 IQSINVAVIGAGAAGLVAARELRRE----GHKVVVLEKSNRI-GGTWVYTPRVESDQ-LGVDPNRAVIHT--SLYSSLRT 104 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~----g~~v~liE~~~~~-gg~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~ 104 (207)
..++||+|+|||++|+++|..|..+ .+||.|+|..+.+ -+.+... ....+. ....+....+.. ..|..+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~-~~f~Nrvss~s~~s~~~fk~~~awd~i~~ 112 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPS-ETFSNRVSSISPASISLFKSIGAWDHIFH 112 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccC-ccccceeecCCcchHHHHHhcCHHHHhhh
Confidence 4589999999999999999998864 4699999987432 1122211 111111 111221111111 11111111
Q ss_pred c--------CCcceeccccccccccCCCCCCCCCCCChhHHHHHHHH-HH--HHcCCceeEEeceEEEEEEee------c
Q 038157 105 N--------LPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEE-FV--SEFGIDEMVRFESEVVNVGLM------E 167 (207)
Q Consensus 105 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~~v~~~~~V~~l~~~------~ 167 (207)
. ...+...-....+.... ....-........++..|.. .+ +..+++ +....++.++.+. +
T Consensus 113 ~R~~~~~~~~v~Ds~s~a~I~~~~d~-~~~d~a~iien~nIq~sL~~s~~~s~~~nv~--vi~~~k~~~~~~~~~l~~~~ 189 (481)
T KOG3855|consen 113 DRYQKFSRMLVWDSCSAALILFDHDN-VGIDMAFIIENDNIQCSLYNSQLDSESDNVT--VINMAKVIDCTIPEYLIKND 189 (481)
T ss_pred hccccccceeeecccchhhhhhcccc-ccccceeeeehhHHHHHHHHHHHhhhcCcee--eecccceeeeccccccCCCC
Confidence 0 11111000001111110 00011122333455555552 22 334666 8889998888762 1
Q ss_pred CCcE-EEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 168 NNKW-KVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 168 ~~~~-~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
.+.| .++..++. .+..|++|.|+|..|.-
T Consensus 190 n~~~~~i~l~dg~-----~~~~~LLigAdg~Ns~v 219 (481)
T KOG3855|consen 190 NGMWFHITLTDGI-----NFATDLLIGADGFNSVV 219 (481)
T ss_pred CcceEEEEeccCc-----eeeeceeeccccccchh
Confidence 1333 46666644 78999999999988763
No 281
>PTZ00058 glutathione reductase; Provisional
Probab=98.78 E-value=2.3e-07 Score=76.57 Aligned_cols=99 Identities=15% Similarity=0.239 Sum_probs=74.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||+|..|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il------------------------------------------- 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL------------------------------------------- 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------------------
Confidence 5689999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.|++ ++.+++|.++..++++.+.+...++ ...+.+|.||+|
T Consensus 274 --~~~--------------d~~i~~~l~~~L~~~GV~--i~~~~~V~~I~~~~~~~v~v~~~~~----~~~i~aD~VlvA 331 (561)
T PTZ00058 274 --RKF--------------DETIINELENDMKKNNIN--IITHANVEEIEKVKEKNLTIYLSDG----RKYEHFDYVIYC 331 (561)
T ss_pred --ccC--------------CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCCCcEEEEECCC----CEEEECCEEEEC
Confidence 000 035667777788888998 9999999999875433344443322 246899999999
Q ss_pred cCCC
Q 038157 195 NGHY 198 (207)
Q Consensus 195 tG~~ 198 (207)
+|..
T Consensus 332 ~Gr~ 335 (561)
T PTZ00058 332 VGRS 335 (561)
T ss_pred cCCC
Confidence 9944
No 282
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.77 E-value=2.8e-07 Score=74.82 Aligned_cols=98 Identities=29% Similarity=0.378 Sum_probs=72.3
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||+|..|+.+|..|++.|.+|+++|+.+.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 205 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL------------------------------------------- 205 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-------------------------------------------
Confidence 4689999999999999999999999999999875320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+...+.+.+++. ++ ++++++|+++..+++..+.++..+++ ..++.+|.||+|
T Consensus 206 --~~~--------------d~~~~~~~~~~l~~~-I~--i~~~~~v~~i~~~~~~~v~~~~~~~~---~~~i~~D~vi~a 263 (460)
T PRK06292 206 --PLE--------------DPEVSKQAQKILSKE-FK--IKLGAKVTSVEKSGDEKVEELEKGGK---TETIEADYVLVA 263 (460)
T ss_pred --cch--------------hHHHHHHHHHHHhhc-cE--EEcCCEEEEEEEcCCceEEEEEcCCc---eEEEEeCEEEEc
Confidence 000 025666777777777 88 99999999998765212333322322 357999999999
Q ss_pred cCC
Q 038157 195 NGH 197 (207)
Q Consensus 195 tG~ 197 (207)
+|.
T Consensus 264 ~G~ 266 (460)
T PRK06292 264 TGR 266 (460)
T ss_pred cCC
Confidence 994
No 283
>PLN02785 Protein HOTHEAD
Probab=98.76 E-value=4.9e-08 Score=80.96 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=32.3
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
...||+||||+|.+|+.+|..|++ +.+|+|||+++
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 456999999999999999999999 68999999986
No 284
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.76 E-value=3.3e-07 Score=74.68 Aligned_cols=99 Identities=18% Similarity=0.144 Sum_probs=74.3
Q ss_pred cccEEEECCChhHHHHHHHHHH---CCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCccee
Q 038157 35 SINVAVIGAGAAGLVAARELRR---EGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~---~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
+.+++|||||..|+.+|..++. .|.+|+|+|+.+.+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il---------------------------------------- 226 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL---------------------------------------- 226 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc----------------------------------------
Confidence 4689999999999999977654 389999999875320
Q ss_pred ccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEE
Q 038157 112 GFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAV 191 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~V 191 (207)
+.. ...+.+.+.+.+++.|++ ++.+++|+++..++++...+.+.++ ..+.+|.|
T Consensus 227 -----~~~--------------d~~~~~~l~~~L~~~GI~--i~~~~~v~~i~~~~~~~~~v~~~~g-----~~i~~D~v 280 (486)
T TIGR01423 227 -----RGF--------------DSTLRKELTKQLRANGIN--IMTNENPAKVTLNADGSKHVTFESG-----KTLDVDVV 280 (486)
T ss_pred -----ccc--------------CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCceEEEEEcCC-----CEEEcCEE
Confidence 000 036677788888889998 9999999999876434445665442 36999999
Q ss_pred EEccCCCC
Q 038157 192 VVCNGHYT 199 (207)
Q Consensus 192 V~AtG~~s 199 (207)
|+|+|...
T Consensus 281 l~a~G~~P 288 (486)
T TIGR01423 281 MMAIGRVP 288 (486)
T ss_pred EEeeCCCc
Confidence 99999543
No 285
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.75 E-value=1.9e-07 Score=75.37 Aligned_cols=98 Identities=26% Similarity=0.322 Sum_probs=73.4
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+|+|||+|++|+.+|..|++.|.+|+++++.+.+.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 185 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL------------------------------------------- 185 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-------------------------------------------
Confidence 3689999999999999999999999999998764210
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+. .+ ...+.+.+.+.+++.+++ ++++++|+++..++ +...+.+.+ ..+.+|.||+|
T Consensus 186 --~~-----------~~--~~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~------~~i~~d~vi~a 241 (444)
T PRK09564 186 --PD-----------SF--DKEITDVMEEELRENGVE--LHLNEFVKSLIGED-KVEGVVTDK------GEYEADVVIVA 241 (444)
T ss_pred --ch-----------hc--CHHHHHHHHHHHHHCCCE--EEcCCEEEEEecCC-cEEEEEeCC------CEEEcCEEEEC
Confidence 00 00 136777888888899998 99999999996543 433444322 25899999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 242 ~G~~p 246 (444)
T PRK09564 242 TGVKP 246 (444)
T ss_pred cCCCc
Confidence 99653
No 286
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.74 E-value=6.4e-08 Score=80.39 Aligned_cols=41 Identities=49% Similarity=0.757 Sum_probs=36.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
...+|+|||+|++|+++|+.|++.|++|+++|+.+.+||.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l 176 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMM 176 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCee
Confidence 35699999999999999999999999999999988777654
No 287
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.74 E-value=4e-07 Score=74.22 Aligned_cols=99 Identities=23% Similarity=0.241 Sum_probs=75.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||||..|+.+|..|++.|.+|+|+++. .+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~-------------------------------------------- 214 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL-------------------------------------------- 214 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cc--------------------------------------------
Confidence 357999999999999999999999999999874 21
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
.+.. ...+.+.+.+.+++.|++ ++++++++.+...+ +...+++.++++ ..++.+|.||+|
T Consensus 215 -l~~~--------------d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~~~~--~~~i~~D~vl~a 274 (484)
T TIGR01438 215 -LRGF--------------DQDCANKVGEHMEEHGVK--FKRQFVPIKVEQIE-AKVKVTFTDSTN--GIEEEYDTVLLA 274 (484)
T ss_pred -cccc--------------CHHHHHHHHHHHHHcCCE--EEeCceEEEEEEcC-CeEEEEEecCCc--ceEEEeCEEEEE
Confidence 0000 035667778888888998 99999999988765 445566655332 246899999999
Q ss_pred cCCC
Q 038157 195 NGHY 198 (207)
Q Consensus 195 tG~~ 198 (207)
+|..
T Consensus 275 ~G~~ 278 (484)
T TIGR01438 275 IGRD 278 (484)
T ss_pred ecCC
Confidence 9954
No 288
>PLN02268 probable polyamine oxidase
Probab=98.74 E-value=1.7e-08 Score=81.31 Aligned_cols=41 Identities=46% Similarity=0.655 Sum_probs=37.9
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeee
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVY 76 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~ 76 (207)
.+|+|||||++|+++|+.|.+.|++|+|+|+.+.+||.+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 38999999999999999999999999999999999987653
No 289
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.74 E-value=9.4e-08 Score=74.80 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
..+.+.+.+.+++.|++ ++++++|.++...++....|.+.++ .++.+|+||+|.|..++
T Consensus 173 ~~vvkni~~~l~~~G~e--i~f~t~VeDi~~~~~~~~~v~~~~g-----~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESLGGE--IRFNTEVEDIEIEDNEVLGVKLTKG-----EEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhcCcE--EEeeeEEEEEEecCCceEEEEccCC-----cEEecCEEEEccCcchH
Confidence 36778889999999998 9999999999998744556776664 37999999999997554
No 290
>PLN02576 protoporphyrinogen oxidase
Probab=98.73 E-value=1.8e-08 Score=82.51 Aligned_cols=42 Identities=45% Similarity=0.693 Sum_probs=38.4
Q ss_pred CcccEEEECCChhHHHHHHHHHHC-CCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRRE-GHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~-g~~v~liE~~~~~gg~~~ 75 (207)
..+||+|||||++||++|+.|++. |.+|+|+|+.+.+||.+.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence 457999999999999999999999 999999999999988644
No 291
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.72 E-value=1.5e-07 Score=70.52 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCC--cEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENN--KWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~--~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
.....+...+.+..+..+.. +..+-++..+...++. .+-+++.++. .++++++.||-|+|..|.
T Consensus 193 vD~~~v~ls~~edF~~~gg~--i~~n~~l~g~~~n~~~~~~Ypivv~ngk---~ee~r~~~~vtc~gl~sd 258 (453)
T KOG2665|consen 193 VDWGSVTLSFGEDFDFMGGR--IYTNFRLQGIAQNKEATFSYPIVVLNGK---GEEKRTKNVVTCAGLQSD 258 (453)
T ss_pred eehHHHHHHHHHHHHHhccc--ccccceeccchhccCCCCCCceEEecCc---cceeEEeEEEEeccccHh
Confidence 44455666666667777777 8999999999887632 3446666655 357999999999997654
No 292
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.72 E-value=3.2e-07 Score=73.78 Aligned_cols=97 Identities=26% Similarity=0.301 Sum_probs=72.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+|+|||+|.+|+.+|..|++.|.+|+++++.+.+..
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------------------ 174 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------------------ 174 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------------------
Confidence 35899999999999999999999999999998643200
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+. ....+.+.+.+.+++.|++ ++++++|.++..++ . . +.+.++ ..+.+|.||+|
T Consensus 175 --~~--------------~~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~-~-~-v~~~~g-----~~i~~D~vi~a 228 (427)
T TIGR03385 175 --KL--------------FDEEMNQIVEEELKKHEIN--LRLNEEVDSIEGEE-R-V-KVFTSG-----GVYQADMVILA 228 (427)
T ss_pred --cc--------------cCHHHHHHHHHHHHHcCCE--EEeCCEEEEEecCC-C-E-EEEcCC-----CEEEeCEEEEC
Confidence 00 0025566777888888998 99999999997653 3 3 344442 36899999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 229 ~G~~p 233 (427)
T TIGR03385 229 TGIKP 233 (427)
T ss_pred CCccC
Confidence 99543
No 293
>PRK07233 hypothetical protein; Provisional
Probab=98.71 E-value=2e-08 Score=80.67 Aligned_cols=38 Identities=42% Similarity=0.785 Sum_probs=35.9
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
+|+|||||++|+++|+.|++.|++|+|+|+.+.+||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 68999999999999999999999999999999998864
No 294
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.71 E-value=1.9e-08 Score=80.57 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=40.1
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
+..|||+|||+|.+|+.+|..|++.|.+|+++|+++..||.+.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 3469999999999999999999999999999999999998766
No 295
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.70 E-value=2.3e-08 Score=81.15 Aligned_cols=40 Identities=38% Similarity=0.615 Sum_probs=36.9
Q ss_pred ccEEEECCChhHHHHHHHHHHC----CCeEEEEeeCCCCCceee
Q 038157 36 INVAVIGAGAAGLVAARELRRE----GHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~----g~~v~liE~~~~~gg~~~ 75 (207)
.||+|||||++|+++|+.|+++ |.+|+|+|+++.+||.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 6999999999999999999998 999999999998887644
No 296
>PRK14727 putative mercuric reductase; Provisional
Probab=98.70 E-value=4.2e-07 Score=74.14 Aligned_cols=97 Identities=16% Similarity=0.207 Sum_probs=73.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||+|..|+.+|..|++.|.+|+|+++....
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l-------------------------------------------- 223 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL-------------------------------------------- 223 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------------------------------
Confidence 468999999999999999999999999999874210
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.+++ ++++++|+++..++ +.+.+...+ .++.+|.||+|
T Consensus 224 --~~~--------------d~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~------g~i~aD~VlvA 278 (479)
T PRK14727 224 --FRE--------------DPLLGETLTACFEKEGIE--VLNNTQASLVEHDD-NGFVLTTGH------GELRAEKLLIS 278 (479)
T ss_pred --Ccc--------------hHHHHHHHHHHHHhCCCE--EEcCcEEEEEEEeC-CEEEEEEcC------CeEEeCEEEEc
Confidence 000 025566777788888998 99999999998765 445554332 24889999999
Q ss_pred cCCCCC
Q 038157 195 NGHYTE 200 (207)
Q Consensus 195 tG~~s~ 200 (207)
+|.+..
T Consensus 279 ~G~~pn 284 (479)
T PRK14727 279 TGRHAN 284 (479)
T ss_pred cCCCCC
Confidence 997654
No 297
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.70 E-value=1.7e-07 Score=72.80 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=33.6
Q ss_pred EEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccC
Q 038157 154 VRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNG 196 (207)
Q Consensus 154 v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG 196 (207)
++.+++|+++...+++.|.+++.+...++...+.+|.||+|||
T Consensus 296 l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 296 LLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred EeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 7889999999998755899999987766678899999999999
No 298
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.69 E-value=3.3e-07 Score=78.77 Aligned_cols=98 Identities=22% Similarity=0.230 Sum_probs=75.3
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecccc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTD 115 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (207)
.+++|||||..|+.+|..|++.|.+|+|+|+.+.+..
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~------------------------------------------- 177 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA------------------------------------------- 177 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------------------------------
Confidence 5799999999999999999999999999998642100
Q ss_pred ccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEcc
Q 038157 116 YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCN 195 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~At 195 (207)
. .. ...+...+.+.+++.|++ +++++.++++..++ ....|++.++. .+.+|.||+|+
T Consensus 178 ~-~l--------------d~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~-~~~~v~~~dG~-----~i~~D~Vi~a~ 234 (785)
T TIGR02374 178 K-QL--------------DQTAGRLLQRELEQKGLT--FLLEKDTVEIVGAT-KADRIRFKDGS-----SLEADLIVMAA 234 (785)
T ss_pred h-hc--------------CHHHHHHHHHHHHHcCCE--EEeCCceEEEEcCC-ceEEEEECCCC-----EEEcCEEEECC
Confidence 0 00 024566777788889998 99999999987654 45567776643 69999999999
Q ss_pred CCCC
Q 038157 196 GHYT 199 (207)
Q Consensus 196 G~~s 199 (207)
|...
T Consensus 235 G~~P 238 (785)
T TIGR02374 235 GIRP 238 (785)
T ss_pred CCCc
Confidence 9543
No 299
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.69 E-value=2.4e-08 Score=80.72 Aligned_cols=39 Identities=44% Similarity=0.761 Sum_probs=35.7
Q ss_pred cEEEECCChhHHHHHHHHHHCC--CeEEEEeeCCCCCceee
Q 038157 37 NVAVIGAGAAGLVAARELRREG--HKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g--~~v~liE~~~~~gg~~~ 75 (207)
+|+|||||++|+++|+.|++.| ++|+|+|+++.+||.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence 6999999999999999999987 89999999999987643
No 300
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.69 E-value=2.5e-08 Score=81.49 Aligned_cols=62 Identities=15% Similarity=-0.054 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHY 198 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~ 198 (207)
..+.+.|.+.+++.|.+ ++++++|++|..+++....+.+.++..++.+++.||.||.+....
T Consensus 232 ~~l~~aL~~~~~~~G~~--i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGN--LLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCE--EeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 46778888888888888 999999999998874334455555422222468999999998753
No 301
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.69 E-value=4.7e-07 Score=74.46 Aligned_cols=97 Identities=23% Similarity=0.240 Sum_probs=71.4
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+|+|||||..|+.+|..|++.+.+|+++|+.+...
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~------------------------------------------- 388 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK------------------------------------------- 388 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-------------------------------------------
Confidence 3589999999999999999999999999998753210
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHH-cCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSE-FGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
....+.+.+++ .|++ +++++.++++..+++....|++.++.+++.+.+.+|.||+
T Consensus 389 ----------------------~~~~l~~~l~~~~gV~--i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~ 444 (515)
T TIGR03140 389 ----------------------ADKVLQDKLKSLPNVD--ILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFV 444 (515)
T ss_pred ----------------------hhHHHHHHHhcCCCCE--EEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence 00123334444 5888 9999999999876434445777765444456799999999
Q ss_pred ccCCC
Q 038157 194 CNGHY 198 (207)
Q Consensus 194 AtG~~ 198 (207)
|.|..
T Consensus 445 a~G~~ 449 (515)
T TIGR03140 445 QIGLV 449 (515)
T ss_pred EeCCc
Confidence 99943
No 302
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.69 E-value=3.2e-08 Score=77.58 Aligned_cols=40 Identities=38% Similarity=0.645 Sum_probs=36.5
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
+||+|||||++|+++|..|++.|.+|+|+|+.+.+||.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcee
Confidence 6999999999999999999999999999999887877543
No 303
>PLN02568 polyamine oxidase
Probab=98.69 E-value=3.4e-08 Score=81.19 Aligned_cols=43 Identities=37% Similarity=0.594 Sum_probs=38.1
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCC-----CeEEEEeeCCCCCceee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREG-----HKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g-----~~v~liE~~~~~gg~~~ 75 (207)
+..+||+|||||++|+++|..|++.| .+|+|+|++..+||.+.
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 44579999999999999999999877 89999999988887644
No 304
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.68 E-value=6.8e-07 Score=72.37 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=70.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll------------------------------------------- 205 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL------------------------------------------- 205 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-------------------------------------------
Confidence 4689999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+... ..+...+.+.. +.+++ ++.+++|+++..++ +.+.+++.++ ..+.+|.||+|
T Consensus 206 --~~~d--------------~~~~~~l~~~~-~~gI~--i~~~~~V~~i~~~~-~~v~v~~~~g-----~~i~~D~vl~a 260 (452)
T TIGR03452 206 --RHLD--------------EDISDRFTEIA-KKKWD--IRLGRNVTAVEQDG-DGVTLTLDDG-----STVTADVLLVA 260 (452)
T ss_pred --cccC--------------HHHHHHHHHHH-hcCCE--EEeCCEEEEEEEcC-CeEEEEEcCC-----CEEEcCEEEEe
Confidence 0000 13344444433 34677 89999999998765 4455655432 36899999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 261 ~G~~p 265 (452)
T TIGR03452 261 TGRVP 265 (452)
T ss_pred eccCc
Confidence 99543
No 305
>PRK14694 putative mercuric reductase; Provisional
Probab=98.68 E-value=5.8e-07 Score=73.10 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=73.5
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||+|..|+.+|..|++.|.+|+++++....
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l-------------------------------------------- 213 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL-------------------------------------------- 213 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC--------------------------------------------
Confidence 468999999999999999999999999999864211
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+. ....+.+.+.+.+++.|++ ++.+++|.++..++ +.+.+.+.+ .++.+|.||+|
T Consensus 214 --~~--------------~~~~~~~~l~~~l~~~GI~--v~~~~~v~~i~~~~-~~~~v~~~~------~~i~~D~vi~a 268 (468)
T PRK14694 214 --SQ--------------EDPAVGEAIEAAFRREGIE--VLKQTQASEVDYNG-REFILETNA------GTLRAEQLLVA 268 (468)
T ss_pred --CC--------------CCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEECC------CEEEeCEEEEc
Confidence 00 0125667788888889998 99999999997665 444444322 25999999999
Q ss_pred cCCCCC
Q 038157 195 NGHYTE 200 (207)
Q Consensus 195 tG~~s~ 200 (207)
+|....
T Consensus 269 ~G~~pn 274 (468)
T PRK14694 269 TGRTPN 274 (468)
T ss_pred cCCCCC
Confidence 996544
No 306
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=1.2e-07 Score=78.62 Aligned_cols=66 Identities=14% Similarity=-0.076 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHcCCceeEEeceEEEEEEee-cCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCC
Q 038157 134 HAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLM-ENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEP 201 (207)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~-~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~ 201 (207)
...+...|.+.+++.+++ ++.++.++++..+ ++.+.++...+..+++...+.|+.||+|||+++..
T Consensus 125 G~~i~~~L~~~~~~~gi~--i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTT--FLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCE--EEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 457888888888888888 9999999999975 33566777755444446788999999999999864
No 307
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.67 E-value=3.3e-07 Score=73.90 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=71.8
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||||..|+.+|..|++.|.+|+|+++.+.+..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~------------------------------------------ 185 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK------------------------------------------ 185 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch------------------------------------------
Confidence 35899999999999999999999999999998643200
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
.. ..++.+.+.+.+++.|++ ++.+++|+++.. . .+++.++ ..+.+|.||+|
T Consensus 186 ---~~--------------d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~---~--~v~~~~g-----~~~~~D~vl~a 236 (438)
T PRK13512 186 ---LM--------------DADMNQPILDELDKREIP--YRLNEEIDAING---N--EVTFKSG-----KVEHYDMIIEG 236 (438)
T ss_pred ---hc--------------CHHHHHHHHHHHHhcCCE--EEECCeEEEEeC---C--EEEECCC-----CEEEeCEEEEC
Confidence 00 025666777788888998 999999999853 2 3555442 25899999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 237 ~G~~p 241 (438)
T PRK13512 237 VGTHP 241 (438)
T ss_pred cCCCc
Confidence 99543
No 308
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.67 E-value=8.8e-08 Score=75.47 Aligned_cols=42 Identities=48% Similarity=0.632 Sum_probs=38.4
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
...+++|||||++|+.||+.|+..|++|.|+||.+..||...
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence 346899999999999999999999999999999998888754
No 309
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.64 E-value=6.5e-07 Score=68.37 Aligned_cols=96 Identities=23% Similarity=0.245 Sum_probs=69.3
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+|+|||+|.+|+.+|..|++.+.+|+++++.+...
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------------------------------------------- 177 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------------------------------------------- 177 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-------------------------------------------
Confidence 4589999999999999999999999999999853110
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
. ...+.+.+++. +++ ++.+++++++..++ +...+.+.+...+..+++.+|.||+
T Consensus 178 -----~-----------------~~~~~~~l~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~ 232 (300)
T TIGR01292 178 -----A-----------------EKILLDRLRKNPNIE--FLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFI 232 (300)
T ss_pred -----c-----------------CHHHHHHHHhCCCeE--EEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEE
Confidence 0 01123334455 887 89999999998654 4445666543333346899999999
Q ss_pred ccCCC
Q 038157 194 CNGHY 198 (207)
Q Consensus 194 AtG~~ 198 (207)
|+|..
T Consensus 233 a~G~~ 237 (300)
T TIGR01292 233 AIGHE 237 (300)
T ss_pred eeCCC
Confidence 99943
No 310
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.64 E-value=1.1e-06 Score=73.80 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=72.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+|+|||||..|+..|..|++.|.+|+|+|+.+.+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll------------------------------------------- 348 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL------------------------------------------- 348 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-------------------------------------------
Confidence 4589999999999999999999999999999975320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHH-HHcCCceeEEeceEEEEEEeecCC-cEEEEEEecC---CC-------c
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFV-SEFGIDEMVRFESEVVNVGLMENN-KWKVKSKLRN---GD-------G 182 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~~~V~~l~~~~~~-~~~v~~~~~~---~~-------~ 182 (207)
+.. ...+.+++.... ++.+++ ++.+++|.++..+++. .+.+.+.+.. .+ .
T Consensus 349 --~~~--------------d~eis~~l~~~ll~~~GV~--I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 410 (659)
T PTZ00153 349 --PLL--------------DADVAKYFERVFLKSKPVR--VHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMND 410 (659)
T ss_pred --ccC--------------CHHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecCCceEEEEEEecccccccccccccccc
Confidence 000 025566666654 567888 9999999999876422 2445443211 11 1
Q ss_pred eeEEEeCEEEEccCCC
Q 038157 183 DCDEIYDAVVVCNGHY 198 (207)
Q Consensus 183 ~~~i~a~~VV~AtG~~ 198 (207)
.+++.+|.||+|+|..
T Consensus 411 ~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 411 IKETYVDSCLVATGRK 426 (659)
T ss_pred ceEEEcCEEEEEECcc
Confidence 1469999999999943
No 311
>PRK13748 putative mercuric reductase; Provisional
Probab=98.64 E-value=8.5e-07 Score=73.79 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=73.2
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||+|..|+.+|..|++.|.+|+|+++....
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l-------------------------------------------- 305 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF-------------------------------------------- 305 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc--------------------------------------------
Confidence 468999999999999999999999999999874210
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+.+.+.+.+++.|++ ++.+++|+++..++ +.+.+.+.+ ..+.+|.||+|
T Consensus 306 --~~~--------------d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~-~~~~v~~~~------~~i~~D~vi~a 360 (561)
T PRK13748 306 --FRE--------------DPAIGEAVTAAFRAEGIE--VLEHTQASQVAHVD-GEFVLTTGH------GELRADKLLVA 360 (561)
T ss_pred --ccc--------------CHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEecC------CeEEeCEEEEc
Confidence 000 025667777888888998 99999999998765 444444432 24899999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
+|...
T Consensus 361 ~G~~p 365 (561)
T PRK13748 361 TGRAP 365 (561)
T ss_pred cCCCc
Confidence 99543
No 312
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.64 E-value=3.6e-08 Score=80.84 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGH 197 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~ 197 (207)
..+.+.|.+.+++.|++ ++++++|+++..++++.+.|++.++. .+.||.||.|.+.
T Consensus 219 ~~l~~al~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~V~~~~g~-----~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGE--LRLNAEVIRIETEGGRATAVHLADGE-----RLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCE--EEECCeEEEEEeeCCEEEEEEECCCC-----EEECCEEEECCcH
Confidence 46778888888888988 99999999999876455677776533 6899999999885
No 313
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.63 E-value=9.8e-07 Score=72.27 Aligned_cols=98 Identities=22% Similarity=0.213 Sum_probs=73.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+.+++|||+|..|+.+|..|++.|.+|+|+++.. +
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~-------------------------------------------- 216 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-P-------------------------------------------- 216 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-c--------------------------------------------
Confidence 3589999999999999999999999999998631 1
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
.+.. ...+.+.+.+.+++.+++ ++.++.+..+...+ +...+.+.++ ..+.+|.||+|
T Consensus 217 -l~~~--------------d~~~~~~l~~~l~~~GV~--i~~~~~v~~v~~~~-~~~~v~~~~g-----~~i~~D~vl~a 273 (499)
T PTZ00052 217 -LRGF--------------DRQCSEKVVEYMKEQGTL--FLEGVVPINIEKMD-DKIKVLFSDG-----TTELFDTVLYA 273 (499)
T ss_pred -cccC--------------CHHHHHHHHHHHHHcCCE--EEcCCeEEEEEEcC-CeEEEEECCC-----CEEEcCEEEEe
Confidence 0000 025667777888888998 99999999988765 4455655442 25789999999
Q ss_pred cCCCCC
Q 038157 195 NGHYTE 200 (207)
Q Consensus 195 tG~~s~ 200 (207)
.|....
T Consensus 274 ~G~~pn 279 (499)
T PTZ00052 274 TGRKPD 279 (499)
T ss_pred eCCCCC
Confidence 995443
No 314
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.63 E-value=7.2e-07 Score=77.02 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=76.3
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
...++|||||..|+.+|..|++.|.+|+|+|+.+..-.
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~------------------------------------------ 182 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA------------------------------------------ 182 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh------------------------------------------
Confidence 35799999999999999999999999999998642100
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecC-CcEEEEEEecCCCceeEEEeCEEEE
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN-NKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~-~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
... .....+.+.+.+++.|++ ++.++.++++..+++ ....+.+.++ ..+.+|.||+
T Consensus 183 --~~l--------------d~~~~~~l~~~L~~~GV~--v~~~~~v~~I~~~~~~~~~~v~~~dG-----~~i~~D~Vv~ 239 (847)
T PRK14989 183 --EQL--------------DQMGGEQLRRKIESMGVR--VHTSKNTLEIVQEGVEARKTMRFADG-----SELEVDFIVF 239 (847)
T ss_pred --hhc--------------CHHHHHHHHHHHHHCCCE--EEcCCeEEEEEecCCCceEEEEECCC-----CEEEcCEEEE
Confidence 000 035667788888899999 999999999976432 3445666553 3699999999
Q ss_pred ccCCCCC
Q 038157 194 CNGHYTE 200 (207)
Q Consensus 194 AtG~~s~ 200 (207)
|+|....
T Consensus 240 A~G~rPn 246 (847)
T PRK14989 240 STGIRPQ 246 (847)
T ss_pred CCCcccC
Confidence 9995443
No 315
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.63 E-value=1.7e-07 Score=74.22 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCCC
Q 038157 131 FPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRIA 204 (207)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~p 204 (207)
+.....+...|.+.+++ |++ ++++++|+++..++ +.|.|++.++. .+.||.||+|+|.|+..+.+
T Consensus 131 ~idp~~~~~~l~~~~~~-G~~--i~~~~~V~~i~~~~-~~~~v~t~~g~-----~~~a~~vV~a~G~~~~~l~~ 195 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RLT--LHFNTEITSLERDG-EGWQLLDANGE-----VIAASVVVLANGAQAGQLAQ 195 (381)
T ss_pred ccChHHHHHHHHhccCC-CcE--EEeCCEEEEEEEcC-CeEEEEeCCCC-----EEEcCEEEEcCCcccccccc
Confidence 34556788888888888 888 99999999998876 66777765532 58999999999999876543
No 316
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.60 E-value=9.4e-07 Score=70.99 Aligned_cols=93 Identities=26% Similarity=0.234 Sum_probs=70.2
Q ss_pred cEEEECCChhHHHHHHHHHH--------------CCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccc
Q 038157 37 NVAVIGAGAAGLVAARELRR--------------EGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSL 102 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~--------------~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (207)
.++|||||++|+.+|..|++ .+.+|+|+++.+.+.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------- 223 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------- 223 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-------------------------------
Confidence 89999999999999999885 368899998864320
Q ss_pred cccCCcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCc
Q 038157 103 RTNLPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDG 182 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~ 182 (207)
+.. ...+.+.+.+.+++.|++ ++.+++|+++..+ .|.+.++
T Consensus 224 --------------~~~--------------~~~~~~~~~~~L~~~gV~--v~~~~~v~~v~~~-----~v~~~~g---- 264 (424)
T PTZ00318 224 --------------GSF--------------DQALRKYGQRRLRRLGVD--IRTKTAVKEVLDK-----EVVLKDG---- 264 (424)
T ss_pred --------------ccC--------------CHHHHHHHHHHHHHCCCE--EEeCCeEEEEeCC-----EEEECCC----
Confidence 000 025667788888899998 9999999988643 2556553
Q ss_pred eeEEEeCEEEEccCCCCC
Q 038157 183 DCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 183 ~~~i~a~~VV~AtG~~s~ 200 (207)
.++.+|.||.|+|....
T Consensus 265 -~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 265 -EVIPTGLVVWSTGVGPG 281 (424)
T ss_pred -CEEEccEEEEccCCCCc
Confidence 36899999999995443
No 317
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.60 E-value=9.9e-07 Score=70.31 Aligned_cols=100 Identities=29% Similarity=0.434 Sum_probs=78.6
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+++|||+|+.|+.+|..|+++|++|+++|+.+.+++...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~--------------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL--------------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh---------------------------------------
Confidence 47999999999999999999999999999999876533221
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEE--EEEEecCCCceeEEEeCEEE
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWK--VKSKLRNGDGDCDEIYDAVV 192 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~--v~~~~~~~~~~~~i~a~~VV 192 (207)
. ..+.+.+.+..++.+++ ++.+.+++++....+.... +...+ ...+.+|.++
T Consensus 177 -----------------~--~~~~~~~~~~l~~~gi~--~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~d~~~ 230 (415)
T COG0446 177 -----------------D--PEVAEELAELLEKYGVE--LLLGTKVVGVEGKGNTLVVERVVGID-----GEEIKADLVI 230 (415)
T ss_pred -----------------h--HHHHHHHHHHHHHCCcE--EEeCCceEEEEcccCcceeeEEEEeC-----CcEEEeeEEE
Confidence 0 26788899999999988 8999999999987632222 33333 2478999999
Q ss_pred EccCCCC
Q 038157 193 VCNGHYT 199 (207)
Q Consensus 193 ~AtG~~s 199 (207)
++.|...
T Consensus 231 ~~~g~~p 237 (415)
T COG0446 231 IGPGERP 237 (415)
T ss_pred Eeecccc
Confidence 9999544
No 318
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.59 E-value=2.6e-07 Score=75.97 Aligned_cols=70 Identities=10% Similarity=-0.074 Sum_probs=54.8
Q ss_pred CCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 131 FPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
+.....+...+...+++.|++ ++++++|+++..+++..+.|++.+..+++...+.|+.||+|+|.|+..+
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l 193 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGAR--IFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRI 193 (516)
T ss_pred EECHHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHH
Confidence 345567788888889999998 9999999999987645567887664333345799999999999998653
No 319
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.59 E-value=8.9e-08 Score=71.77 Aligned_cols=41 Identities=34% Similarity=0.566 Sum_probs=38.2
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeee
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVY 76 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~ 76 (207)
+|++|||+|.+|+..|..|++.|.+|+|+||.+-+||++.-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 79999999999999999999999999999999889988653
No 320
>PLN02546 glutathione reductase
Probab=98.58 E-value=1.4e-06 Score=71.99 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=73.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+|+|||||..|+.+|..|++.|.+|+|+++.+.+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il------------------------------------------- 288 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL------------------------------------------- 288 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------------------------------------------
Confidence 4689999999999999999999999999999864320
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+.. ...+...+.+.+++.|++ ++.+++++++...+++...+...+ .....+|.||+|
T Consensus 289 --~~~--------------d~~~~~~l~~~L~~~GV~--i~~~~~v~~i~~~~~g~v~v~~~~-----g~~~~~D~Viva 345 (558)
T PLN02546 289 --RGF--------------DEEVRDFVAEQMSLRGIE--FHTEESPQAIIKSADGSLSLKTNK-----GTVEGFSHVMFA 345 (558)
T ss_pred --ccc--------------CHHHHHHHHHHHHHCCcE--EEeCCEEEEEEEcCCCEEEEEECC-----eEEEecCEEEEe
Confidence 000 136667788888889998 999999999986543434443322 123448999999
Q ss_pred cCCCCC
Q 038157 195 NGHYTE 200 (207)
Q Consensus 195 tG~~s~ 200 (207)
+|....
T Consensus 346 ~G~~Pn 351 (558)
T PLN02546 346 TGRKPN 351 (558)
T ss_pred eccccC
Confidence 995543
No 321
>PRK10262 thioredoxin reductase; Provisional
Probab=98.56 E-value=2e-06 Score=66.57 Aligned_cols=102 Identities=18% Similarity=0.128 Sum_probs=74.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+|+|||+|..|+.+|..|++.+.+|+++++.+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~------------------------------------------- 182 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR------------------------------------------- 182 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-------------------------------------------
Confidence 4689999999999999999999999999999863210
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecC-CCceeEEEeCEEEE
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRN-GDGDCDEIYDAVVV 193 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~-~~~~~~i~a~~VV~ 193 (207)
. ...+.+.+.+.+++.+++ ++.+++++++..++.+...|++.++. ++...++.+|.||+
T Consensus 183 -~-----------------~~~~~~~~~~~l~~~gV~--i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~ 242 (321)
T PRK10262 183 -A-----------------EKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFV 242 (321)
T ss_pred -C-----------------CHHHHHHHHhhccCCCeE--EEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEE
Confidence 0 013345566667778888 89999999997654233456666542 22245799999999
Q ss_pred ccCCCC
Q 038157 194 CNGHYT 199 (207)
Q Consensus 194 AtG~~s 199 (207)
|.|...
T Consensus 243 a~G~~p 248 (321)
T PRK10262 243 AIGHSP 248 (321)
T ss_pred EeCCcc
Confidence 999543
No 322
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.56 E-value=1.4e-06 Score=71.72 Aligned_cols=97 Identities=22% Similarity=0.182 Sum_probs=71.6
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecccc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTD 115 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (207)
.+|+|||||..|+.+|..|+..+.+|+|+++.+.+.
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-------------------------------------------- 387 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-------------------------------------------- 387 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc--------------------------------------------
Confidence 589999999999999999999999999998764210
Q ss_pred ccccccCCCCCCCCCCCChhHHHHHHHHHHHH-cCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 116 YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSE-FGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
. ...+.+.+.+ .|++ ++.+++++++..+++....+++.+..+++..++.+|.|++|
T Consensus 388 -----~----------------~~~l~~~l~~~~gI~--i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~ 444 (517)
T PRK15317 388 -----A----------------DQVLQDKLRSLPNVT--IITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQ 444 (517)
T ss_pred -----c----------------cHHHHHHHhcCCCcE--EEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEe
Confidence 0 0112233333 5788 99999999998765344457777655444567999999999
Q ss_pred cCCCC
Q 038157 195 NGHYT 199 (207)
Q Consensus 195 tG~~s 199 (207)
.|...
T Consensus 445 ~G~~p 449 (517)
T PRK15317 445 IGLVP 449 (517)
T ss_pred ECCcc
Confidence 99543
No 323
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.54 E-value=1.2e-07 Score=76.92 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=35.1
Q ss_pred ccEEEECCChhHHHHHHHHHHC------CCeEEEEeeCCCCCceee
Q 038157 36 INVAVIGAGAAGLVAARELRRE------GHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~------g~~v~liE~~~~~gg~~~ 75 (207)
.+|+|||||++|+++|+.|++. |.+|+|+|+++.+||.+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 3799999999999999999985 379999999998887643
No 324
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.53 E-value=6.6e-07 Score=68.66 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=36.4
Q ss_pred CcccEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~~gg~~~ 75 (207)
....|+|||+||||..+|.+|.++ +++|.|+|+.+.+.|-..
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvR 62 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVR 62 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceee
Confidence 345999999999999999999984 689999999988866554
No 325
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.52 E-value=3.5e-07 Score=73.43 Aligned_cols=97 Identities=34% Similarity=0.489 Sum_probs=70.3
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
-.+|+|||+||+|+++|..|++.|+.|+++|+.+.+||...+.-.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP----------------------------------- 167 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIP----------------------------------- 167 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCc-----------------------------------
Confidence 479999999999999999999999999999999988877653210
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
+ +. -..++.+...+.+++.|++ ++.++++-. .++++.-. -..|+|++|
T Consensus 168 ~--~k-------------l~k~i~d~~i~~l~~~Gv~--~~~~~~vG~---------~it~~~L~------~e~Dav~l~ 215 (457)
T COG0493 168 D--FK-------------LPKDILDRRLELLERSGVE--FKLNVRVGR---------DITLEELL------KEYDAVFLA 215 (457)
T ss_pred h--hh-------------ccchHHHHHHHHHHHcCeE--EEEcceECC---------cCCHHHHH------HhhCEEEEe
Confidence 0 11 1136777777888888887 888888652 12222211 123999999
Q ss_pred cCCC
Q 038157 195 NGHY 198 (207)
Q Consensus 195 tG~~ 198 (207)
+|.+
T Consensus 216 ~G~~ 219 (457)
T COG0493 216 TGAG 219 (457)
T ss_pred cccc
Confidence 9954
No 326
>PLN02676 polyamine oxidase
Probab=98.52 E-value=1.5e-07 Score=76.75 Aligned_cols=43 Identities=37% Similarity=0.663 Sum_probs=38.2
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCCCCCceee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSNRIGGTWV 75 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~~~gg~~~ 75 (207)
...+||+|||||++|+++|+.|++.|. +|+|+|+.+.+||.+.
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~ 67 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMR 67 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcce
Confidence 446899999999999999999999998 6999999988887543
No 327
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.52 E-value=1.3e-07 Score=76.59 Aligned_cols=38 Identities=45% Similarity=0.692 Sum_probs=35.4
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
+|+|||||++|+++|+.|+++|++|+|+|+.+.+||.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence 58999999999999999999999999999998888754
No 328
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.51 E-value=1.6e-07 Score=74.19 Aligned_cols=35 Identities=40% Similarity=0.407 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI 70 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~ 70 (207)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 59999999999999999999999999999987654
No 329
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=1.5e-07 Score=74.93 Aligned_cols=39 Identities=46% Similarity=0.677 Sum_probs=36.2
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
+|+|+|||+||+++|+.|+++|++|+|+|+.+..||-+.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceee
Confidence 799999999999999999999999999999999987543
No 330
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.46 E-value=6.2e-07 Score=69.65 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=51.8
Q ss_pred CCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCCC
Q 038157 130 RFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPRI 203 (207)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~~ 203 (207)
.+.....+...|.+.+++.|++ ++.+++|+++..++++.+.|.+.+ ..+.||.||+|+|+|+..+.
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~--~~~~~~v~~i~~~~~~~~~v~~~~------g~~~a~~vV~a~G~~~~~l~ 197 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVE--IIEHTEVQHIEIRGEKVTAIVTPS------GDVQADQVVLAAGAWAGELL 197 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCE--EEccceEEEEEeeCCEEEEEEcCC------CEEECCEEEEcCChhhhhcc
Confidence 4455678889999999999998 999999999998763334455433 25899999999999987654
No 331
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.43 E-value=9.3e-07 Score=69.27 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYT 199 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s 199 (207)
..+...+.+.+++.|.+ +.++.+|.++..+++...+|.+.||. ++.++.||=-++.|-
T Consensus 264 Gavs~aia~~~~~~Gae--I~tka~Vq~Illd~gka~GV~L~dG~-----ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAE--IFTKATVQSILLDSGKAVGVRLADGT-----EVRSKIVVSNATPWD 321 (561)
T ss_pred hHHHHHHHHHHHhccce--eeehhhhhheeccCCeEEEEEecCCc-----EEEeeeeecCCchHH
Confidence 46678899999999999 99999999999988677889999865 678888887666663
No 332
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.41 E-value=4.3e-07 Score=73.88 Aligned_cols=39 Identities=46% Similarity=0.646 Sum_probs=35.6
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
+|+|||||++|+++|+.|++.|++|+|+|+++.+||...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVG 39 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceee
Confidence 589999999999999999999999999999988887543
No 333
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.40 E-value=5.1e-07 Score=76.85 Aligned_cols=43 Identities=56% Similarity=0.748 Sum_probs=38.5
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
....+|+|||||++|+++|+.|+++|++|+|+|+...+||.+.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence 3468999999999999999999999999999999988887643
No 334
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.40 E-value=1.9e-06 Score=71.62 Aligned_cols=67 Identities=13% Similarity=-0.031 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 134 HAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
...+...|.+.+++.+++ ++.++.++++..+++.+.++...+..+++...+.|+.||+|||+++...
T Consensus 118 G~~i~~~L~~~~~~~gi~--i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~~ 184 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTS--FFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRIY 184 (565)
T ss_pred hHHHHHHHHHHHHhCCCE--EEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccccC
Confidence 457888888888888888 9999999999976545566766554444456789999999999998654
No 335
>PLN02529 lysine-specific histone demethylase 1
Probab=98.39 E-value=5.2e-07 Score=76.30 Aligned_cols=42 Identities=52% Similarity=0.661 Sum_probs=37.8
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
.+.||+|||||++|+++|..|+++|++|+|+|+.+.+||.+.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 467999999999999999999999999999999887777643
No 336
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.37 E-value=7.1e-06 Score=64.84 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=82.3
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
.-.|+++|+|..|+.+|..|..++.+|+++++.+.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~-------------------------------------------- 248 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL-------------------------------------------- 248 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------------------------------------------
Confidence 456999999999999999999999999999987532
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecC-CcEEEEEEecCCCceeEEEeCEEEE
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMEN-NKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~-~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
.+-.. ...+.+.+.++.++.+++ ++.++.+.++..+.+ ....|.+.++. ++.||.||+
T Consensus 249 -~~~lf-------------~~~i~~~~~~y~e~kgVk--~~~~t~~s~l~~~~~Gev~~V~l~dg~-----~l~adlvv~ 307 (478)
T KOG1336|consen 249 -LPRLF-------------GPSIGQFYEDYYENKGVK--FYLGTVVSSLEGNSDGEVSEVKLKDGK-----TLEADLVVV 307 (478)
T ss_pred -hhhhh-------------hHHHHHHHHHHHHhcCeE--EEEecceeecccCCCCcEEEEEeccCC-----EeccCeEEE
Confidence 00000 137788888899999998 999999999988764 44557777744 799999999
Q ss_pred ccCCCCCCCCCC
Q 038157 194 CNGHYTEPRIAE 205 (207)
Q Consensus 194 AtG~~s~~~~p~ 205 (207)
++| ..|..+.
T Consensus 308 GiG--~~p~t~~ 317 (478)
T KOG1336|consen 308 GIG--IKPNTSF 317 (478)
T ss_pred eec--ccccccc
Confidence 999 6665543
No 337
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.37 E-value=8.2e-07 Score=70.00 Aligned_cols=43 Identities=44% Similarity=0.671 Sum_probs=37.4
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCC-CeEEEEeeCCCCCceee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREG-HKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g-~~v~liE~~~~~gg~~~ 75 (207)
.....|+|||||+||++||.+|.++| ..++|+|..+.+||++.
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 34569999999999999999999775 69999999999887644
No 338
>PLN02612 phytoene desaturase
Probab=98.31 E-value=1.4e-06 Score=72.36 Aligned_cols=41 Identities=39% Similarity=0.678 Sum_probs=37.2
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
.+.+|+|||+|++|+++|+.|++.|++|+|+|+.+..||..
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcc
Confidence 46799999999999999999999999999999988777653
No 339
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.31 E-value=1.4e-06 Score=67.86 Aligned_cols=43 Identities=40% Similarity=0.581 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC--eEEEEeeCCCCCceeee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH--KVVVLEKSNRIGGTWVY 76 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~--~v~liE~~~~~gg~~~~ 76 (207)
...+|+|+|||++|+++|+.|++++. +|+|+|+++..||-+..
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 34699999999999999999999864 66779999998876654
No 340
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.28 E-value=3e-06 Score=63.04 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCCCC
Q 038157 132 PGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTEPR 202 (207)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~~~ 202 (207)
.....+..+|.+.+.+.|+ .+...+|.++..-. + -.+|.||.|+|.|+..+
T Consensus 148 sE~~~ylpyl~k~l~e~Gv---ef~~r~v~~l~E~~---------~--------~~~DVivNCtGL~a~~L 198 (342)
T KOG3923|consen 148 SEGPKYLPYLKKRLTENGV---EFVQRRVESLEEVA---------R--------PEYDVIVNCTGLGAGKL 198 (342)
T ss_pred ccchhhhHHHHHHHHhcCc---EEEEeeeccHHHhc---------c--------CCCcEEEECCccccccc
Confidence 3456889999999999988 46677777665432 0 24899999999888765
No 341
>PLN02487 zeta-carotene desaturase
Probab=98.26 E-value=2.3e-06 Score=70.82 Aligned_cols=40 Identities=45% Similarity=0.676 Sum_probs=36.5
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
+.+|+|||+|++|+++|+.|++.|++|+|+|+.+..||.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence 3599999999999999999999999999999998887643
No 342
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.26 E-value=9.5e-07 Score=62.70 Aligned_cols=41 Identities=39% Similarity=0.708 Sum_probs=34.8
Q ss_pred cccEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCCCCc-eee
Q 038157 35 SINVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNRIGG-TWV 75 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~~gg-~~~ 75 (207)
..||+|||+|.+|+++|+..+++ ..+|.|||.+-.+|| .|.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 46999999999999999999964 679999999877754 454
No 343
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.26 E-value=3.4e-05 Score=61.81 Aligned_cols=40 Identities=33% Similarity=0.488 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHHHC----CCeEEEEeeCCCCCceee
Q 038157 36 INVAVIGAGAAGLVAARELRRE----GHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~----g~~v~liE~~~~~gg~~~ 75 (207)
.+.=|||+|+|+|++|..|-+- |-+|.|+|+.+.+||++-
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 4677999999999999999984 679999999988877654
No 344
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.25 E-value=1.3e-05 Score=64.86 Aligned_cols=98 Identities=30% Similarity=0.332 Sum_probs=67.7
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecccc
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFTD 115 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (207)
.+|+|||||..|+-+|..|++.|.+|+++++.... .
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~--------------------------------------------~ 308 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE--------------------------------------------D 308 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc--------------------------------------------c
Confidence 58999999999999999999999999999886310 0
Q ss_pred ccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcE-EEEEEe---------cC------
Q 038157 116 YPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKW-KVKSKL---------RN------ 179 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~-~v~~~~---------~~------ 179 (207)
. . .. ....+.+++.|++ +++++.++++..++++.+ .|++.. +.
T Consensus 309 ~--~-------------~~----~~~~~~l~~~GV~--~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~ 367 (449)
T TIGR01316 309 M--T-------------AR----VEEIAHAEEEGVK--FHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPC 367 (449)
T ss_pred C--C-------------CC----HHHHHHHHhCCCE--EEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeec
Confidence 0 0 00 1112345677888 999999999876543333 455531 10
Q ss_pred CCceeEEEeCEEEEccCCC
Q 038157 180 GDGDCDEIYDAVVVCNGHY 198 (207)
Q Consensus 180 ~~~~~~i~a~~VV~AtG~~ 198 (207)
++....+.+|.||+|.|..
T Consensus 368 ~~~~~~i~~D~Vi~AiG~~ 386 (449)
T TIGR01316 368 GDAECKLEADAVIVAIGNG 386 (449)
T ss_pred CCceEEEECCEEEECCCCC
Confidence 1223579999999999954
No 345
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.24 E-value=1.5e-05 Score=62.58 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCe-EEEEeeC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHK-VVVLEKS 67 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~-v~liE~~ 67 (207)
..++|||+|..|+.+|..|++.|.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 5899999999999999999999986 9999875
No 346
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.23 E-value=1.5e-06 Score=66.07 Aligned_cols=38 Identities=45% Similarity=0.726 Sum_probs=34.3
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCce
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGT 73 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~ 73 (207)
..+|+|||+|++|+++|+.|+++ .+|+|+|.+...||.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 46999999999999999999986 799999999888765
No 347
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.22 E-value=1.1e-05 Score=63.91 Aligned_cols=112 Identities=20% Similarity=0.395 Sum_probs=73.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC--eEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH--KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~--~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
...++|||+|++|..|+..+.+.|. +++|+-+...+ .+. . ..+..
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----pyd------------------r---~~Ls~-------- 120 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----PYD------------------R---ARLSK-------- 120 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----ccc------------------c---hhccc--------
Confidence 5789999999999999999999874 66666544211 000 0 00000
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVV 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV 192 (207)
... .....+.....+..++.+++ .++++.|+.++... + .|.+.++ +.+..+.++
T Consensus 121 ---~~~-------------~~~~~~a~r~~e~Yke~gIe--~~~~t~v~~~D~~~-K--~l~~~~G-----e~~kys~Li 174 (478)
T KOG1336|consen 121 ---FLL-------------TVGEGLAKRTPEFYKEKGIE--LILGTSVVKADLAS-K--TLVLGNG-----ETLKYSKLI 174 (478)
T ss_pred ---cee-------------eccccccccChhhHhhcCce--EEEcceeEEeeccc-c--EEEeCCC-----ceeecceEE
Confidence 000 00012222223356788898 99999999999876 2 4666653 479999999
Q ss_pred EccCCCCCCCCCCCC
Q 038157 193 VCNGHYTEPRIAEIP 207 (207)
Q Consensus 193 ~AtG~~s~~~~p~~~ 207 (207)
+||| |.+..|++|
T Consensus 175 lATG--s~~~~l~~p 187 (478)
T KOG1336|consen 175 IATG--SSAKTLDIP 187 (478)
T ss_pred Eeec--CccccCCCC
Confidence 9999 677777665
No 348
>PLN03000 amine oxidase
Probab=98.18 E-value=2.7e-06 Score=72.81 Aligned_cols=42 Identities=48% Similarity=0.672 Sum_probs=38.4
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
...+|+|||||++|+.+|..|++.|++|+|+|+.+.+||.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 458999999999999999999999999999999988887654
No 349
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.16 E-value=5.8e-05 Score=61.36 Aligned_cols=101 Identities=23% Similarity=0.230 Sum_probs=68.6
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH-KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
..+|+|||+|..|+.+|..|++.|. +|+++++.+.. .
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~----~-------------------------------------- 310 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE----E-------------------------------------- 310 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc----c--------------------------------------
Confidence 4689999999999999999999998 89999875311 0
Q ss_pred ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEec-------C-------
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLR-------N------- 179 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~-------~------- 179 (207)
.+. . .. ..+.+++.|++ +++++.++.+..++++.-.|++... +
T Consensus 311 --~~~--~-------------~~----~~~~~~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~ 367 (457)
T PRK11749 311 --MPA--S-------------EE----EVEHAKEEGVE--FEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPI 367 (457)
T ss_pred --CCC--C-------------HH----HHHHHHHCCCE--EEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCC
Confidence 000 0 01 13445678888 9999999998766522223444311 0
Q ss_pred CCceeEEEeCEEEEccCCCCC
Q 038157 180 GDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 180 ~~~~~~i~a~~VV~AtG~~s~ 200 (207)
++...++.+|.||+|.|....
T Consensus 368 ~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 368 EGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred CCceEEEECCEEEECccCCCC
Confidence 122467999999999996543
No 350
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=98.15 E-value=6.7e-06 Score=64.20 Aligned_cols=104 Identities=24% Similarity=0.365 Sum_probs=77.9
Q ss_pred CcccEEEECCChhHHHHHHHHHH--------------CCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceeccccc
Q 038157 34 QSINVAVIGAGAAGLVAARELRR--------------EGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLY 99 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~--------------~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (207)
.--.++||||||.|...|..|+. ..++|+++|..+.+
T Consensus 217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i----------------------------- 267 (491)
T KOG2495|consen 217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI----------------------------- 267 (491)
T ss_pred heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH-----------------------------
Confidence 34689999999999999999984 23688888876422
Q ss_pred ccccccCCcceeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecC
Q 038157 100 SSLRTNLPREVMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRN 179 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~ 179 (207)
.++.. ..+.++.++...+.++. ++.++.|..+..++ |++..++
T Consensus 268 ----------------L~mFd--------------krl~~yae~~f~~~~I~--~~~~t~Vk~V~~~~-----I~~~~~~ 310 (491)
T KOG2495|consen 268 ----------------LNMFD--------------KRLVEYAENQFVRDGID--LDTGTMVKKVTEKT-----IHAKTKD 310 (491)
T ss_pred ----------------HHHHH--------------HHHHHHHHHHhhhccce--eecccEEEeecCcE-----EEEEcCC
Confidence 11222 37788888888888998 99999999887765 4454442
Q ss_pred CCceeEEEeCEEEEccCCCCCCCCC
Q 038157 180 GDGDCDEIYDAVVVCNGHYTEPRIA 204 (207)
Q Consensus 180 ~~~~~~i~a~~VV~AtG~~s~~~~p 204 (207)
+. ...|-.-.+|.|||...+|.+-
T Consensus 311 g~-~~~iPYG~lVWatG~~~rp~~k 334 (491)
T KOG2495|consen 311 GE-IEEIPYGLLVWATGNGPRPVIK 334 (491)
T ss_pred Cc-eeeecceEEEecCCCCCchhhh
Confidence 22 4678899999999988877654
No 351
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.14 E-value=4.3e-05 Score=63.57 Aligned_cols=34 Identities=35% Similarity=0.396 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..+|+|||||..|+.+|..|++.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 4689999999999999999999999999999864
No 352
>PRK12831 putative oxidoreductase; Provisional
Probab=98.12 E-value=3.5e-05 Score=62.65 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=30.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKS 67 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~ 67 (207)
..+|+|||||..|+-+|..|.+.|.+|+++++.
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 469999999999999999999999999999875
No 353
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.11 E-value=6.5e-05 Score=59.20 Aligned_cols=92 Identities=26% Similarity=0.279 Sum_probs=65.2
Q ss_pred ccEEEECCChhHHHHHHHHHH----CC--CeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcc
Q 038157 36 INVAVIGAGAAGLVAARELRR----EG--HKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPRE 109 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~----~g--~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+|+|||+|.+|+.+|..|++ +| .+|+|+ ..+.+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~--------------------------------------- 185 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASL--------------------------------------- 185 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcc---------------------------------------
Confidence 489999999999999999985 34 477777 32111
Q ss_pred eeccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeC
Q 038157 110 VMGFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYD 189 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~ 189 (207)
.+. ....+...+.+.+++.+++ ++.+++|+++.. + .+.+.++ .++.+|
T Consensus 186 ------l~~--------------~~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~---~--~v~~~~g-----~~i~~D 233 (364)
T TIGR03169 186 ------LPG--------------FPAKVRRLVLRLLARRGIE--VHEGAPVTRGPD---G--ALILADG-----RTLPAD 233 (364)
T ss_pred ------ccc--------------CCHHHHHHHHHHHHHCCCE--EEeCCeeEEEcC---C--eEEeCCC-----CEEecC
Confidence 000 0124566777888889998 999999998743 2 3555443 368999
Q ss_pred EEEEccCCCC
Q 038157 190 AVVVCNGHYT 199 (207)
Q Consensus 190 ~VV~AtG~~s 199 (207)
.||+|+|...
T Consensus 234 ~vi~a~G~~p 243 (364)
T TIGR03169 234 AILWATGARA 243 (364)
T ss_pred EEEEccCCCh
Confidence 9999999543
No 354
>PLN02976 amine oxidase
Probab=98.09 E-value=5.1e-06 Score=74.07 Aligned_cols=43 Identities=49% Similarity=0.747 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVY 76 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~ 76 (207)
..+||+|||+|++|+.+|+.|++.|.+|+|+|+...+||.+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 4589999999999999999999999999999999888887554
No 355
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.05 E-value=5e-06 Score=71.89 Aligned_cols=44 Identities=48% Similarity=0.832 Sum_probs=39.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYT 77 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~ 77 (207)
.-..|+|||+|++|+++|-+|-+.|+.|+++||++.+||-..+.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg 1827 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG 1827 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec
Confidence 45799999999999999999999999999999999999876553
No 356
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=1.7e-05 Score=60.07 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI 70 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~ 70 (207)
..-|-|||||.||+.+|++++++|++|.|+|-.+.-
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 357899999999999999999999999999976443
No 357
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.01 E-value=7.8e-05 Score=58.11 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=38.7
Q ss_pred EEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCC
Q 038157 154 VRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHY 198 (207)
Q Consensus 154 v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~ 198 (207)
++-.++|++++..+++.+.+.+.....++.++++.|.||+|||-.
T Consensus 295 l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 295 LLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred eccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 777999999999886668899988777767899999999999944
No 358
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.99 E-value=1.1e-05 Score=66.07 Aligned_cols=39 Identities=31% Similarity=0.392 Sum_probs=34.6
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHC-CCeEEEEeeCCCC
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRRE-GHKVVVLEKSNRI 70 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~-g~~v~liE~~~~~ 70 (207)
....||+||||||.|||.+|..|++. .++|+|+|++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 34679999999999999999999996 6899999998554
No 359
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.97 E-value=0.00016 Score=59.11 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=66.4
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH-KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
...|+|||+|..|+-+|..+.+.|. +|++++....+.... .
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~--------------------------------------~ 322 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR--------------------------------------N 322 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc--------------------------------------c
Confidence 3589999999999999999888886 787665432210000 0
Q ss_pred ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEe-----c----CCCcee
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKL-----R----NGDGDC 184 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~-----~----~~~~~~ 184 (207)
.... ...++ .....+.+++.|++ +++++.++++..+++....|.+.. + ..++.+
T Consensus 323 ~~~~----------~~~~~-----~~~~~~~~~~~GV~--i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~ 385 (471)
T PRK12810 323 KNNP----------WPYWP-----MKLEVSNAHEEGVE--REFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEF 385 (471)
T ss_pred cccC----------Ccccc-----hHHHHHHHHHcCCe--EEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceE
Confidence 0000 00000 11123445677888 999999999975442333454431 1 012246
Q ss_pred EEEeCEEEEccCCCC
Q 038157 185 DEIYDAVVVCNGHYT 199 (207)
Q Consensus 185 ~i~a~~VV~AtG~~s 199 (207)
.+.+|.||+|.|...
T Consensus 386 ~i~~D~VI~A~G~~p 400 (471)
T PRK12810 386 VLPADLVLLAMGFTG 400 (471)
T ss_pred EEECCEEEECcCcCC
Confidence 799999999999543
No 360
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.97 E-value=0.00017 Score=56.60 Aligned_cols=124 Identities=18% Similarity=0.172 Sum_probs=78.7
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCccee
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
...+.+|+|+|+|.+|+++...|-..-++|+++.....+-=.+.
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL------------------------------------ 95 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL------------------------------------ 95 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec------------------------------------
Confidence 45678999999999999999999888899999986543210000
Q ss_pred ccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCC-CceeEEEeCE
Q 038157 112 GFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNG-DGDCDEIYDA 190 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~-~~~~~i~a~~ 190 (207)
. ......-...+.+.+-+...+++.+.. .-++..+.+.+..+. +.+.+......+ ..+..+.+|+
T Consensus 96 -------L-----pS~~vGTve~rSIvEPIr~i~r~k~~~-~~y~eAec~~iDp~~-k~V~~~s~t~~~~~~e~~i~YDy 161 (491)
T KOG2495|consen 96 -------L-----PSTTVGTVELRSIVEPIRAIARKKNGE-VKYLEAECTKIDPDN-KKVHCRSLTADSSDKEFVIGYDY 161 (491)
T ss_pred -------c-----CCccccceeehhhhhhHHHHhhccCCC-ceEEecccEeecccc-cEEEEeeeccCCCcceeeecccE
Confidence 0 000111122246666677777666443 146688888888776 444333322222 3356788999
Q ss_pred EEEccCCCCCCCCCCCC
Q 038157 191 VVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 191 VV~AtG~~s~~~~p~~~ 207 (207)
+|+|+| +.+..+++|
T Consensus 162 LViA~G--A~~~TFgip 176 (491)
T KOG2495|consen 162 LVIAVG--AEPNTFGIP 176 (491)
T ss_pred EEEecc--CCCCCCCCC
Confidence 999999 666555554
No 361
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.92 E-value=0.00012 Score=61.02 Aligned_cols=114 Identities=19% Similarity=0.267 Sum_probs=76.3
Q ss_pred cccEEEECCChhHHHHHHHHHHC---CCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCccee
Q 038157 35 SINVAVIGAGAAGLVAARELRRE---GHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVM 111 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~---g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
+..++|||.|++|..+.-.+.+. -+.|+++-..+.+.-. ...
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~---------------------------Ri~-------- 47 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYN---------------------------RIL-------- 47 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcccc---------------------------cee--------
Confidence 46899999999999999999883 3588887665432100 000
Q ss_pred ccccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEE
Q 038157 112 GFTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAV 191 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~V 191 (207)
. .++... -....++...-.+..++++++ ++.+.+|+.+..++ + .|+...+ .++.+|.+
T Consensus 48 -L--s~vl~~---------~~~~edi~l~~~dwy~~~~i~--L~~~~~v~~idr~~-k--~V~t~~g-----~~~~YDkL 105 (793)
T COG1251 48 -L--SSVLAG---------EKTAEDISLNRNDWYEENGIT--LYTGEKVIQIDRAN-K--VVTTDAG-----RTVSYDKL 105 (793)
T ss_pred -e--ccccCC---------CccHHHHhccchhhHHHcCcE--EEcCCeeEEeccCc-c--eEEccCC-----cEeeccee
Confidence 0 000000 001123333445557888998 99999999999887 3 3555553 37899999
Q ss_pred EEccCCCCCCCCCCCC
Q 038157 192 VVCNGHYTEPRIAEIP 207 (207)
Q Consensus 192 V~AtG~~s~~~~p~~~ 207 (207)
|+||| |.|.+|++|
T Consensus 106 ilATG--S~pfi~PiP 119 (793)
T COG1251 106 IIATG--SYPFILPIP 119 (793)
T ss_pred EEecC--ccccccCCC
Confidence 99999 999988887
No 362
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.86 E-value=0.00032 Score=62.27 Aligned_cols=93 Identities=18% Similarity=0.130 Sum_probs=67.5
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH-KVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
..+|+|||+|..|+.+|..|++.|. .|+|+|..+..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------------------------------------------- 353 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------------------------------------------- 353 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------------------------------------------
Confidence 3689999999999999999999995 67888764211
Q ss_pred ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
...+.+.+++.+++ ++.++.|+.+..++ ..-.|++....+ ..+++.||.|++
T Consensus 354 ------------------------~~~l~~~L~~~GV~--i~~~~~v~~i~g~~-~v~~V~l~~~~g-~~~~i~~D~V~v 405 (985)
T TIGR01372 354 ------------------------SPEARAEARELGIE--VLTGHVVAATEGGK-RVSGVAVARNGG-AGQRLEADALAV 405 (985)
T ss_pred ------------------------hHHHHHHHHHcCCE--EEcCCeEEEEecCC-cEEEEEEEecCC-ceEEEECCEEEE
Confidence 01133456778888 99999999987654 444566653111 145799999999
Q ss_pred ccCCC
Q 038157 194 CNGHY 198 (207)
Q Consensus 194 AtG~~ 198 (207)
+.|..
T Consensus 406 a~G~~ 410 (985)
T TIGR01372 406 SGGWT 410 (985)
T ss_pred cCCcC
Confidence 99943
No 363
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.79 E-value=3.7e-05 Score=61.44 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=34.3
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVY 76 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~ 76 (207)
+.+|||+|+|-|..-+.+|..|++.|.+|+-+||++.-||.|+.
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 46799999999999999999999999999999999988887653
No 364
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.77 E-value=0.00026 Score=61.12 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCe-EEEEeeC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHK-VVVLEKS 67 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~-v~liE~~ 67 (207)
.+|+|||||..|+-+|..+.+.|.+ |+++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 5899999999999999999999986 9999875
No 365
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.67 E-value=0.00036 Score=56.27 Aligned_cols=56 Identities=25% Similarity=0.400 Sum_probs=38.0
Q ss_pred HHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEE--eCEEEEccCCCCCCCCCCCC
Q 038157 143 EFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEI--YDAVVVCNGHYTEPRIAEIP 207 (207)
Q Consensus 143 ~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~--a~~VV~AtG~~s~~~~p~~~ 207 (207)
+.+.+.+++ ++.+++|+.+..++ +. +.+.+..+. ..+. +|+||+||| +.+..|.+|
T Consensus 52 ~~~~~~gv~--~~~~~~V~~id~~~-~~--v~~~~~~~~--~~~~~~yd~lIiATG--~~p~~~~i~ 109 (427)
T TIGR03385 52 VFIKKRGID--VKTNHEVIEVNDER-QT--VVVRNNKTN--ETYEESYDYLILSPG--ASPIVPNIE 109 (427)
T ss_pred HHHHhcCCe--EEecCEEEEEECCC-CE--EEEEECCCC--CEEecCCCEEEECCC--CCCCCCCCC
Confidence 344667887 88899999998755 43 444432211 3466 999999999 666666554
No 366
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.60 E-value=0.0017 Score=55.32 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHHCCC-eEEEEeeC
Q 038157 36 INVAVIGAGAAGLVAARELRREGH-KVVVLEKS 67 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~ 67 (207)
.+|+|||||..|+-+|..+.+.|. +|+++.+.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~ 501 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR 501 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec
Confidence 589999999999999999999986 69988875
No 367
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.56 E-value=0.0016 Score=55.45 Aligned_cols=33 Identities=36% Similarity=0.491 Sum_probs=29.6
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC-eEEEEeeC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH-KVVVLEKS 67 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~ 67 (207)
..+|+|||+|..|+.+|..+.+.|. +|+|+.+.
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4689999999999999999999986 69999875
No 368
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.53 E-value=0.0024 Score=56.41 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKS 67 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~ 67 (207)
..+|+|||||..|+-+|..+.+.|.+|+++.+.
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 358999999999999999999999999999875
No 369
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.52 E-value=0.0024 Score=52.18 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
...++|||+|..|+.+|..+.+.|. +|+|+++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4689999999999999999999985 799998853
No 370
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.48 E-value=0.00059 Score=51.84 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=30.8
Q ss_pred cCcccEEEECCChhHHHHHHHHHHC-C-CeEEEEeeCC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRRE-G-HKVVVLEKSN 68 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~-g-~~v~liE~~~ 68 (207)
+..+.|+|||||.+|+..|..+.++ | -+|.|+|...
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 4679999999999999999999886 4 3899998753
No 371
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0037 Score=48.04 Aligned_cols=94 Identities=21% Similarity=0.201 Sum_probs=70.2
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..+|+|||||-+++-.|+.|++.+.+|.++=|.+.+
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~-------------------------------------------- 178 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF-------------------------------------------- 178 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc--------------------------------------------
Confidence 349999999999999999999999999999776432
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
...+.+.+.+++. ++. +++++++..+.-++ .-.|++++.. ++...+.++.|++
T Consensus 179 ---------------------ra~~~~~~~l~~~~~i~--~~~~~~i~ei~G~~--v~~v~l~~~~-~~~~~~~~~gvf~ 232 (305)
T COG0492 179 ---------------------RAEEILVERLKKNVKIE--VLTNTVVKEILGDD--VEGVVLKNVK-GEEKELPVDGVFI 232 (305)
T ss_pred ---------------------CcCHHHHHHHHhcCCeE--EEeCCceeEEecCc--cceEEEEecC-CceEEEEeceEEE
Confidence 0023344445444 566 89999999988764 4467777654 3356889999999
Q ss_pred ccCCC
Q 038157 194 CNGHY 198 (207)
Q Consensus 194 AtG~~ 198 (207)
+-|.-
T Consensus 233 ~iG~~ 237 (305)
T COG0492 233 AIGHL 237 (305)
T ss_pred ecCCC
Confidence 99943
No 372
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.41 E-value=0.00013 Score=53.63 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=27.4
Q ss_pred cEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCC
Q 038157 37 NVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNR 69 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~ 69 (207)
..+|||||+||.++|-+|++. ...|+|+..++.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 368999999999999999985 458888877643
No 373
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.41 E-value=0.00047 Score=57.75 Aligned_cols=99 Identities=24% Similarity=0.263 Sum_probs=75.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceecc
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGF 113 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
....-+|||||.-|+.+|..|...|.++.+++-.+.. .+
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l----------------------------Me------------- 182 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL----------------------------ME------------- 182 (793)
T ss_pred ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchH----------------------------HH-------------
Confidence 3445799999999999999999999999888764321 00
Q ss_pred ccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 114 TDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
...+ ..-...|+...++.|+. ++++...+.+..+. ....+.+.|+. .+.||.||.
T Consensus 183 --rQLD---------------~~ag~lL~~~le~~Gi~--~~l~~~t~ei~g~~-~~~~vr~~DG~-----~i~ad~VV~ 237 (793)
T COG1251 183 --RQLD---------------RTAGRLLRRKLEDLGIK--VLLEKNTEEIVGED-KVEGVRFADGT-----EIPADLVVM 237 (793)
T ss_pred --Hhhh---------------hHHHHHHHHHHHhhcce--eecccchhhhhcCc-ceeeEeecCCC-----cccceeEEE
Confidence 0000 24556788888999998 88888888877754 67789998866 689999999
Q ss_pred ccCCC
Q 038157 194 CNGHY 198 (207)
Q Consensus 194 AtG~~ 198 (207)
|+|..
T Consensus 238 a~GIr 242 (793)
T COG1251 238 AVGIR 242 (793)
T ss_pred ecccc
Confidence 99954
No 374
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.35 E-value=0.00096 Score=54.29 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=31.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..+|+|||+|.+|+-.|..|++.+.+|+++.|..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 4689999999999999999999999999998853
No 375
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.35 E-value=0.00033 Score=48.45 Aligned_cols=32 Identities=38% Similarity=0.565 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
.|.|+|||..|.++|..|+++|++|.|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999874
No 376
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0038 Score=48.20 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=68.0
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
..||+|||||-+|..+|+-|+--=..|+++|=.+..
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL-------------------------------------------- 389 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL-------------------------------------------- 389 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh--------------------------------------------
Confidence 479999999999999999999654588888643211
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHc-CCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEE
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEF-GIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVV 193 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~ 193 (207)
...+.|++.++.. +++ +..+.+-+.+.-+++++.++...+..+++.+.+.-+-|++
T Consensus 390 ---------------------kAD~VLq~kl~sl~Nv~--ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFV 446 (520)
T COG3634 390 ---------------------KADAVLQDKLRSLPNVT--IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFV 446 (520)
T ss_pred ---------------------hhHHHHHHHHhcCCCcE--EEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEE
Confidence 2334566666554 566 8888888888887657778888887766555555555555
Q ss_pred ccC
Q 038157 194 CNG 196 (207)
Q Consensus 194 AtG 196 (207)
--|
T Consensus 447 qIG 449 (520)
T COG3634 447 QIG 449 (520)
T ss_pred EEe
Confidence 444
No 377
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.28 E-value=0.001 Score=55.09 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=30.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
...+|+|||+|.+|+-.|..|++...+|.+.-|+.
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 35699999999999999999999888999887763
No 378
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.25 E-value=0.00058 Score=48.34 Aligned_cols=32 Identities=41% Similarity=0.547 Sum_probs=28.0
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
.|.|||+|..|...|..++..|++|.++|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999873
No 379
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.16 E-value=0.0041 Score=55.44 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=27.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC-eEEEEeeC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH-KVVVLEKS 67 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~ 67 (207)
..+|+|||||..|+-+|..+.+.|. .|+++.+.
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4689999999999999999999987 46666653
No 380
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.09 E-value=0.022 Score=46.87 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=29.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
...|+|||||..|+.+|..+.+.|. +|+++|+.+
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 4689999999999999988888874 799998754
No 381
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.08 E-value=0.0012 Score=45.25 Aligned_cols=31 Identities=39% Similarity=0.664 Sum_probs=29.5
Q ss_pred EEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 38 VAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 38 v~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
|+|+|+|..|+..|..|++.|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999875
No 382
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.07 E-value=0.0054 Score=48.93 Aligned_cols=44 Identities=27% Similarity=0.313 Sum_probs=32.6
Q ss_pred HHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCCCC
Q 038157 146 SEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHYTE 200 (207)
Q Consensus 146 ~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~s~ 200 (207)
.+.++. ++.+++|+++.... . .+.+.++ .+..|++|+|+|....
T Consensus 64 ~~~~i~--~~~~~~v~~id~~~-~--~v~~~~g------~~~yd~LvlatGa~~~ 107 (415)
T COG0446 64 RATGID--VRTGTEVTSIDPEN-K--VVLLDDG------EIEYDYLVLATGARPR 107 (415)
T ss_pred HhhCCE--EeeCCEEEEecCCC-C--EEEECCC------cccccEEEEcCCCccc
Confidence 455677 89999999998876 3 3555553 4889999999995433
No 383
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.05 E-value=0.00069 Score=54.11 Aligned_cols=52 Identities=17% Similarity=0.124 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCC
Q 038157 139 RYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHY 198 (207)
Q Consensus 139 ~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~ 198 (207)
..+...+...+.+ ++++++|++|..++ +.+.|++.+++ .+.||.||+|+...
T Consensus 213 ~~~~~~~~~~g~~--i~l~~~V~~I~~~~-~~v~v~~~~g~-----~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 213 LALALAAEELGGE--IRLNTPVTRIERED-GGVTVTTEDGE-----TIEADAVISAVPPS 264 (450)
T ss_dssp HHHHHHHHHHGGG--EESSEEEEEEEEES-SEEEEEETTSS-----EEEESEEEE-S-HH
T ss_pred HHHHHHHhhcCce--eecCCcceeccccc-cccccccccce-----EEecceeeecCchh
Confidence 3444444555566 99999999999998 77888888755 79999999998754
No 384
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.03 E-value=0.0015 Score=50.57 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
.+|+|||+|..|...|..|++.|++|+++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 479999999999999999999999999999964
No 385
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.02 E-value=0.001 Score=47.35 Aligned_cols=32 Identities=38% Similarity=0.616 Sum_probs=26.7
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
+|.|||.|..|+.+|..|++.|++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 68999999999999999999999999999874
No 386
>PRK13984 putative oxidoreductase; Provisional
Probab=97.02 E-value=0.016 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREG 58 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g 58 (207)
..+|+|||||..|+-+|..|++.+
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~ 441 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQ 441 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhcc
Confidence 368999999999999999999875
No 387
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.00 E-value=0.019 Score=48.96 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=29.0
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC-eEEEEeeC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH-KVVVLEKS 67 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~ 67 (207)
..+|+|||+|..|+-+|..+.+.|. +|+++++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr 484 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRR 484 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4689999999999999999888885 79999875
No 388
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.00089 Score=52.42 Aligned_cols=45 Identities=29% Similarity=0.520 Sum_probs=41.4
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeee
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVY 76 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~ 76 (207)
.+..+||+|||-|..-+.+|...++.|.+|+=+|++..-||.|..
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waS 49 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWAS 49 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccc
Confidence 356799999999999999999999999999999999999998874
No 389
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.95 E-value=0.013 Score=49.10 Aligned_cols=33 Identities=36% Similarity=0.556 Sum_probs=27.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCC-CeEEEEeeC
Q 038157 35 SINVAVIGAGAAGLVAARELRREG-HKVVVLEKS 67 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g-~~v~liE~~ 67 (207)
...|+|||+|..|...|..+.+.+ .+|+|+.+.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 468999999999999999888887 578887764
No 390
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.93 E-value=0.0073 Score=46.65 Aligned_cols=99 Identities=21% Similarity=0.211 Sum_probs=74.3
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceec
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMG 112 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
..+.+++|||||..+...|--++..|.++.|+=|...+ +
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv-------------------------------L---------- 225 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV-------------------------------L---------- 225 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh-------------------------------h----------
Confidence 35679999999999999999999999999888776432 0
Q ss_pred cccccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEE
Q 038157 113 FTDYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVV 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV 192 (207)
..|+ ..+...+.+.....|++ ++.++.++.+....++...+....+. .-.+|.|+
T Consensus 226 ---R~FD---------------~~i~~~v~~~~~~~gin--vh~~s~~~~v~K~~~g~~~~i~~~~~-----i~~vd~ll 280 (478)
T KOG0405|consen 226 ---RGFD---------------EMISDLVTEHLEGRGIN--VHKNSSVTKVIKTDDGLELVITSHGT-----IEDVDTLL 280 (478)
T ss_pred ---cchh---------------HHHHHHHHHHhhhccee--ecccccceeeeecCCCceEEEEeccc-----cccccEEE
Confidence 0011 35666777778888988 99999999999877554555444432 34589999
Q ss_pred EccCC
Q 038157 193 VCNGH 197 (207)
Q Consensus 193 ~AtG~ 197 (207)
.|+|.
T Consensus 281 wAiGR 285 (478)
T KOG0405|consen 281 WAIGR 285 (478)
T ss_pred EEecC
Confidence 99993
No 391
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.90 E-value=0.017 Score=51.18 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=29.1
Q ss_pred cccEEEECCChhHHHHHHHHHHC-C-CeEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRRE-G-HKVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~-g-~~v~liE~~~ 68 (207)
..+|+|||||..|+-+|..+.+. | .+|+++.+..
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 46899999999999999988887 5 4899998853
No 392
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.86 E-value=0.027 Score=50.09 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=29.3
Q ss_pred cccEEEECCChhHHHHHHHHHHC-CC-eEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRRE-GH-KVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~-g~-~v~liE~~~ 68 (207)
..+|+|||||..|+-+|..+.+. |. +|+++++..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 46899999999999999988875 75 899998853
No 393
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.85 E-value=0.002 Score=52.77 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..+|+|||+|.+|+++|..|+++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3589999999999999999999999999999654
No 394
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0043 Score=47.70 Aligned_cols=102 Identities=25% Similarity=0.288 Sum_probs=77.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCceeeeCCCCCCCcCCCCCCcceecccccccccccCCcceeccc
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTWVYTPRVESDQLGVDPNRAVIHTSLYSSLRTNLPREVMGFT 114 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
+=.-+|||+|..++.+|-.|+..|..|++.-|+-..
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L-------------------------------------------- 233 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL-------------------------------------------- 233 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeec--------------------------------------------
Confidence 347899999999999999999999999888775210
Q ss_pred cccccccCCCCCCCCCCCChhHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEc
Q 038157 115 DYPFTARDDGSGDPRRFPGHAEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVC 194 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~A 194 (207)
.+|+ ++|.+.+.+..++.|+. +.-....+.++..+++...|...+..+.++-+-..|.|+.|
T Consensus 234 -rGFD---------------qdmae~v~~~m~~~Gik--f~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~A 295 (503)
T KOG4716|consen 234 -RGFD---------------QDMAELVAEHMEERGIK--FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWA 295 (503)
T ss_pred -cccc---------------HHHHHHHHHHHHHhCCc--eeecccceeeeeccCCcEEEEeecccccccccchhhhhhhh
Confidence 0111 58888899999999987 66677778888776566777776655554445568999999
Q ss_pred cCCC
Q 038157 195 NGHY 198 (207)
Q Consensus 195 tG~~ 198 (207)
-|.-
T Consensus 296 iGR~ 299 (503)
T KOG4716|consen 296 IGRK 299 (503)
T ss_pred hccc
Confidence 9843
No 395
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.79 E-value=0.0028 Score=48.33 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNR 69 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~ 69 (207)
..|.|||+|..|...|..++..|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998744
No 396
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.78 E-value=0.0021 Score=49.54 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNR 69 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~ 69 (207)
+|.|||+|..|...|..|+++|++|+++|++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999753
No 397
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.0024 Score=46.85 Aligned_cols=32 Identities=44% Similarity=0.822 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
+++|||+|-.|...|..|.+.|+.|+++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 68999999999999999999999999999874
No 398
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.71 E-value=0.0026 Score=51.84 Aligned_cols=34 Identities=38% Similarity=0.601 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNRI 70 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~ 70 (207)
.|+|||.|.+|+++|..|+++|++|.++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987543
No 399
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.65 E-value=0.0032 Score=45.17 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=29.7
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
...+|+|||+|.++.-+|..|++.|.+|.++-|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 35799999999999999999999999999998864
No 400
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.65 E-value=0.0033 Score=47.95 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..|.|||+|..|...|..+++.|++|.++|++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 401
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.63 E-value=0.0036 Score=48.22 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
.+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 379999999999999999999999999999963
No 402
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.62 E-value=0.0042 Score=47.51 Aligned_cols=33 Identities=33% Similarity=0.333 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..|.|||+|..|...|..|+++|++|.++|++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999863
No 403
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.62 E-value=0.0027 Score=40.59 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=30.7
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKS 67 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~ 67 (207)
....|+|||||..|..-+..|.+.|.+|+++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3579999999999999999999999999999886
No 404
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.59 E-value=0.0046 Score=41.54 Aligned_cols=34 Identities=32% Similarity=0.559 Sum_probs=30.5
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
+..|+|+|+|..|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999998 899999864
No 405
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.58 E-value=0.0047 Score=44.49 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKS 67 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~ 67 (207)
.+..|+|||+|..|+..|..|++.|+ +++|+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45799999999999999999999998 79999987
No 406
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.54 E-value=0.0058 Score=42.24 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=30.2
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEee
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEK 66 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~ 66 (207)
....|+|||||-.|..-+..|.+.|.+|+|+.+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 457999999999999999999999999999954
No 407
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.53 E-value=0.0041 Score=47.49 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
.|.|||+|..|...|..|++.|++|.++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 69999999999999999999999999999874
No 408
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.50 E-value=0.012 Score=46.55 Aligned_cols=53 Identities=25% Similarity=0.196 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccC
Q 038157 136 EVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNG 196 (207)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG 196 (207)
.+.++-.+..++.|+. ++-+..|.++.... +...+.+.||. ++..|+||+|+|
T Consensus 394 yls~wt~ekir~~GV~--V~pna~v~sv~~~~-~nl~lkL~dG~-----~l~tD~vVvavG 446 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVD--VRPNAKVESVRKCC-KNLVLKLSDGS-----ELRTDLVVVAVG 446 (659)
T ss_pred HHHHHHHHHHHhcCce--eccchhhhhhhhhc-cceEEEecCCC-----eeeeeeEEEEec
Confidence 4556666777888988 99999999998877 66778888855 789999999999
No 409
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.49 E-value=0.0054 Score=49.88 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
...++|+|+|.+|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999864
No 410
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.49 E-value=0.0069 Score=40.72 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=31.3
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCe-EEEEeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHK-VVVLEKS 67 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~-v~liE~~ 67 (207)
....++|||+|-+|-.++..|.+.|.+ |.|+.|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 467999999999999999999999986 9999986
No 411
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.48 E-value=0.005 Score=47.62 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..|.|||+|..|...|..++..|++|.++|+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 412
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.47 E-value=0.0064 Score=43.97 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.6
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKS 67 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~ 67 (207)
...|+|||||.+|...+..|.+.|.+|+|++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 358999999999999999999999999999875
No 413
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.46 E-value=0.073 Score=43.79 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.8
Q ss_pred cccEEEECCChhHHHHHHHHHHC
Q 038157 35 SINVAVIGAGAAGLVAARELRRE 57 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~ 57 (207)
..+|+|||+|..|+-+|..|.+.
T Consensus 166 gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 166 SDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC
Confidence 35899999999999999999876
No 414
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.44 E-value=0.0073 Score=43.59 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=30.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKS 67 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~ 67 (207)
....|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3469999999999999999999999999999864
No 415
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.41 E-value=0.0057 Score=46.77 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNR 69 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~ 69 (207)
..|.|||+|..|...|..|++.|++|.++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998743
No 416
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.39 E-value=0.0059 Score=46.84 Aligned_cols=32 Identities=31% Similarity=0.614 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
+|+|||+|..|...|..|++.|.+|++++|..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999999853
No 417
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.38 E-value=0.0059 Score=47.77 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
+|.|||+|..|...|..|++.|++|.+++|+.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 69999999999999999999999999999853
No 418
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.38 E-value=0.0081 Score=42.00 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=29.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKS 67 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~ 67 (207)
.+..|+|+|+|.+|..|+..|...|.+|+++|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 4589999999999999999999999999999986
No 419
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.36 E-value=0.0055 Score=47.08 Aligned_cols=30 Identities=37% Similarity=0.539 Sum_probs=28.9
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEee
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEK 66 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~ 66 (207)
+|+|||+|..|+..|..|++.|.+|.+++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999998
No 420
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.33 E-value=0.0084 Score=45.11 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSNR 69 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~~ 69 (207)
....|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 45799999999999999999999994 9999997643
No 421
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.26 E-value=0.0069 Score=43.85 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=33.3
Q ss_pred ccCcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 32 SIQSINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 32 ~~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
+.....|.|||+|..|+-.|...+..|+.|.|+|++.
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 3456799999999999999999999999999999873
No 422
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.24 E-value=0.01 Score=46.94 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=31.3
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKS 67 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~ 67 (207)
...+|+|||+|.+|..++..|...|.+|.++|++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 3567999999999999999999999999999986
No 423
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.24 E-value=0.024 Score=46.80 Aligned_cols=37 Identities=41% Similarity=0.569 Sum_probs=34.6
Q ss_pred EEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCcee
Q 038157 38 VAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGTW 74 (207)
Q Consensus 38 v~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~~ 74 (207)
|+|||||++|+++|..|++.|++|+|+|+++.+||.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~ 37 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRA 37 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCce
Confidence 6899999999999999999999999999999988753
No 424
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.23 E-value=0.0077 Score=45.84 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
.+|.|||+|..|...|..+++.|++|+++|+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 369999999999999999999999999999764
No 425
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.22 E-value=0.0091 Score=46.62 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=31.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
....|+|||+|..|+.+|..|++.|+ +++|+|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35789999999999999999999998 999999873
No 426
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.18 E-value=0.009 Score=46.45 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
+|.|||+|..|.+.|..|++.|.+|.+++|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999853
No 427
>PLN02602 lactate dehydrogenase
Probab=96.16 E-value=0.012 Score=46.14 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=38.4
Q ss_pred eeeeccCCCCCccC-CCccccccCcccEEEECCChhHHHHHHHHHHCCC--eEEEEeeCC
Q 038157 12 IYNLKRTPTTHNFP-MTKSLLSIQSINVAVIGAGAAGLVAARELRREGH--KVVVLEKSN 68 (207)
Q Consensus 12 ~~~~~~~~~~~~~~-~~~~~~~~~~~dv~IIG~G~aG~~~A~~l~~~g~--~v~liE~~~ 68 (207)
.|..+..|+++... |.. .....|+|||+|..|.++|+.|...+. .+.|+|...
T Consensus 17 ~~~~~~~~~~~~~~~m~~----~~~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 17 LSQAFFKPIHNSSPPSPT----RRHTKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred hhhhhhhccccccccccc----CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 44455566665543 411 122699999999999999999998875 799999754
No 428
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.16 E-value=0.0089 Score=46.93 Aligned_cols=32 Identities=38% Similarity=0.631 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
+|.|||.|..|+..|..|++.|++|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 68999999999999999999999999999863
No 429
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.15 E-value=0.011 Score=45.20 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..|.|||+|..|...|..|+..|.+|.++|++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999864
No 430
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.08 E-value=0.012 Score=45.92 Aligned_cols=34 Identities=38% Similarity=0.603 Sum_probs=31.7
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKS 67 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~ 67 (207)
....|+|||+|-.|+.+|..|++.|. +++|+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45799999999999999999999998 99999986
No 431
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.07 E-value=0.011 Score=47.55 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNR 69 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~ 69 (207)
..|.|||.|..|+.+|..|++.|++|..+|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998744
No 432
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.07 E-value=0.012 Score=45.45 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHHHCC--CeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREG--HKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g--~~v~liE~~~ 68 (207)
+|.|||+|..|+++|+.|+++| ..+.++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999998 4899999864
No 433
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.06 E-value=0.014 Score=42.15 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=32.1
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.+..|+|||.|..|+.+|..|++.|. +++|+|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 45799999999999999999999997 999999873
No 434
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.05 E-value=0.013 Score=45.54 Aligned_cols=32 Identities=34% Similarity=0.374 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
.|.|||+|..|...|..|++.|++|.+++|+.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 69999999999999999999999999999963
No 435
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.04 E-value=0.017 Score=37.48 Aligned_cols=31 Identities=35% Similarity=0.598 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 38 VAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 38 v~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
|+|+|.|..|..++..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7899999999999999999888999999974
No 436
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.015 Score=45.21 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=36.2
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCce
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGT 73 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~ 73 (207)
+.|||+|+|-|+.-+.++..|+-.|.+|+.||+++.-|+.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST 44 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcc
Confidence 4699999999999999999999999999999999776643
No 437
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.02 E-value=0.014 Score=45.01 Aligned_cols=33 Identities=36% Similarity=0.541 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..|.|||+|..|...|..|++.|++|.++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999999764
No 438
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.076 Score=38.72 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=30.5
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
+.-.+|||||=+.+.=|..|.+.+.+|-||-|.+
T Consensus 157 nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd 190 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRD 190 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhh
Confidence 4568999999999999999999999999998864
No 439
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.00 E-value=0.016 Score=42.20 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
....|+|||+|..|+.+|..|++.|. +++|+|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45799999999999999999999997 699999863
No 440
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.98 E-value=0.017 Score=40.34 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=31.2
Q ss_pred cCcccEEEECCCh-hHHHHHHHHHHCCCeEEEEeeC
Q 038157 33 IQSINVAVIGAGA-AGLVAARELRREGHKVVVLEKS 67 (207)
Q Consensus 33 ~~~~dv~IIG~G~-aG~~~A~~l~~~g~~v~liE~~ 67 (207)
-...+++|||+|- +|..+|..|.++|.+|.++.|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3568999999996 6999999999999999999986
No 441
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.96 E-value=0.016 Score=43.03 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=32.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSNR 69 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~~ 69 (207)
....|+|||+|..|+.+|..|++.|. +++|+|.+..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 35799999999999999999999996 9999998643
No 442
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.94 E-value=0.014 Score=46.17 Aligned_cols=32 Identities=38% Similarity=0.689 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHHHCC-CeEEEEeeC
Q 038157 36 INVAVIGAGAAGLVAARELRREG-HKVVVLEKS 67 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g-~~v~liE~~ 67 (207)
.+|+|||+|-.|..+|..|++++ .+|++.+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 48999999999999999999998 899999997
No 443
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.94 E-value=0.02 Score=38.81 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=29.0
Q ss_pred cEEEECC-ChhHHHHHHHHHHCCC--eEEEEeeCC
Q 038157 37 NVAVIGA-GAAGLVAARELRREGH--KVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~-G~aG~~~A~~l~~~g~--~v~liE~~~ 68 (207)
+|.|||+ |..|..+|+.|...+. ++.|+|+..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 6899999 9999999999999864 899999873
No 444
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.93 E-value=0.014 Score=44.89 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.|.|||+|..|+..|+.++.+|. +|+++|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 69999999999999999999876 899999853
No 445
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.92 E-value=0.0099 Score=45.16 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=32.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKS 67 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~ 67 (207)
.+-+|+|||||.+|.-+|.-+...|.+|+|+|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 4679999999999999999999999999999987
No 446
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.91 E-value=0.017 Score=43.06 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=31.7
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.+..|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45799999999999999999999997 999999863
No 447
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.90 E-value=0.021 Score=44.22 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=30.7
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC--eEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH--KVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~--~v~liE~~~ 68 (207)
...|.|||+|..|.++|+.|+..|+ ++.|+|...
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4699999999999999999999987 899999753
No 448
>PRK08328 hypothetical protein; Provisional
Probab=95.90 E-value=0.017 Score=42.61 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=31.4
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.+..|+|||+|-.|+.+|..|++.|. +++|+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35789999999999999999999997 899998764
No 449
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.90 E-value=0.016 Score=40.73 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.|+|||+|..|+..|..|++.|. +++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 699999863
No 450
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.90 E-value=0.012 Score=47.29 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNR 69 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~ 69 (207)
+|.|||.|..|+.+|..|++.|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999998754
No 451
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.89 E-value=0.058 Score=44.47 Aligned_cols=38 Identities=47% Similarity=0.697 Sum_probs=35.7
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCce
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGT 73 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~ 73 (207)
.||+|||||++|+++|..|+++|++|+|+|+++.+||.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~ 39 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGC 39 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 59999999999999999999999999999999888764
No 452
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.89 E-value=0.019 Score=38.90 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.|+|||+|-.|+.+|..|++.|. +++|+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999998 899999864
No 453
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.87 E-value=0.022 Score=44.20 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGH-KVVVLEKSNR 69 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~~ 69 (207)
..|+|||+|..|...|+.++..|+ ++.|+|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 589999999999999999999996 9999998654
No 454
>PRK04148 hypothetical protein; Provisional
Probab=95.84 E-value=0.014 Score=38.98 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNR 69 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~ 69 (207)
..+++||.| .|...|..|++.|.+|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 479999999 999999999999999999998753
No 455
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.83 E-value=0.016 Score=47.69 Aligned_cols=35 Identities=34% Similarity=0.410 Sum_probs=31.9
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
...+|+|+|+|++|+.++..+...|.+|.++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36799999999999999999999999999999863
No 456
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.79 E-value=0.018 Score=44.72 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
+|.|||+|..|...|..|++.|++|.++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999863
No 457
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.79 E-value=0.02 Score=42.13 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.+..|+|||+|..|+.+|..|++.|. +++|+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35799999999999999999999997 999998763
No 458
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.76 E-value=0.02 Score=44.24 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
.+|.|||+|..|...|..|++.|++|.+++|+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 369999999999999999999999999999864
No 459
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.73 E-value=0.024 Score=39.42 Aligned_cols=33 Identities=33% Similarity=0.597 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
.+|-+||-|..|...|..|.+.|++|.++|+++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 479999999999999999999999999999873
No 460
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.73 E-value=0.021 Score=43.50 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
...++|||+|-+|.++++.|++.|. +|.|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4589999999999999999999997 899999863
No 461
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.68 E-value=0.02 Score=45.84 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
...|+|+|.|+.|+.+|..+...|.+|+++|+++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 4689999999999999999999999999999864
No 462
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=95.65 E-value=0.02 Score=47.25 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNR 69 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~ 69 (207)
..|.|||+|..|...|..+++.|++|.++|++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998743
No 463
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0068 Score=47.49 Aligned_cols=39 Identities=26% Similarity=0.543 Sum_probs=35.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCCCCce
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSNRIGGT 73 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~~gg~ 73 (207)
.|||+|+|-|..-|.++..|+..|.+|+.+||++.-|+.
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~ 42 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGE 42 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcc
Confidence 499999999999999999999999999999999877654
No 464
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.59 E-value=0.023 Score=41.75 Aligned_cols=34 Identities=35% Similarity=0.626 Sum_probs=30.6
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC---eEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH---KVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~---~v~liE~~~ 68 (207)
...++|+|+|-+|..+|..|.+.|. ++.|++|..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4689999999999999999999997 599999973
No 465
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.58 E-value=0.026 Score=41.88 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=31.1
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCC-----------CeEEEEeeCC
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREG-----------HKVVVLEKSN 68 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g-----------~~v~liE~~~ 68 (207)
..+.+|+|||+|-.|+.++..|++.| .+++|+|.+.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 45689999999999999999999864 3899999863
No 466
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.55 E-value=0.041 Score=42.13 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=29.9
Q ss_pred cccEEEECC-ChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 35 SINVAVIGA-GAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~-G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
...++|.|| |-.|..+|..|+++|++|+++.|+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 356899997 8999999999999999999999863
No 467
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.54 E-value=0.025 Score=38.04 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=27.1
Q ss_pred EEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 38 VAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 38 v~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
++|+|+|..+.+++..++..|++|+++|..+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999764
No 468
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.54 E-value=0.029 Score=41.36 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.+..|+|||.|-.|+.+|..|++.|. +++|+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35789999999999999999999997 999999763
No 469
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.49 E-value=0.036 Score=39.94 Aligned_cols=34 Identities=35% Similarity=0.481 Sum_probs=31.1
Q ss_pred cccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
...++|+|.|-.|..+|..|.+.|.+|+++|++.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3579999999999999999999999999999763
No 470
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.48 E-value=0.024 Score=43.11 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
+|.|||.|..|.+.|..|++.|.+|.+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999863
No 471
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.46 E-value=0.034 Score=43.00 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHHHHHCCC--eEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREGH--KVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g~--~v~liE~~~ 68 (207)
...|.|||+|..|.++|+.|+..+. ++.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4589999999999999999998875 899999753
No 472
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=95.45 E-value=0.1 Score=42.56 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCC-cEEEEEEecCCCceeEEEeCEEEEccCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENN-KWKVKSKLRNGDGDCDEIYDAVVVCNGHY 198 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~-~~~v~~~~~~~~~~~~i~a~~VV~AtG~~ 198 (207)
..+.+.|.+.+++.|.+ ++++++|++|...+++ ..+|.+.++++.+..++.||.||+|....
T Consensus 213 ~~l~~~l~~~l~~~g~~--i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGE--VRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD 275 (453)
T ss_pred HHHHHHHHHHHHhcCCE--EeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence 45667777777778888 9999999999875534 44577765443322368999999998754
No 473
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.45 E-value=0.031 Score=46.20 Aligned_cols=34 Identities=38% Similarity=0.527 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNR 69 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~ 69 (207)
..|.|||+|..|...|..+++.|+.|.++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998743
No 474
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.45 E-value=0.033 Score=40.10 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.+..|+|||+|..|+.+|..|++.|. +++|+|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35799999999999999999999997 799999864
No 475
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.45 E-value=0.03 Score=43.22 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHHCC--CeEEEEeeCCC
Q 038157 37 NVAVIGAGAAGLVAARELRREG--HKVVVLEKSNR 69 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g--~~v~liE~~~~ 69 (207)
.|+|||+|.+|.++|+.|+..| .++.|+|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999998 48999998643
No 476
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.44 E-value=0.031 Score=43.07 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.+|.|||+|..|...|..++..|. +|.|+|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 489999999999999999999875 999999854
No 477
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.40 E-value=0.034 Score=40.00 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=31.5
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
....|+|||+|..|+.+|..|++.|. +++|+|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35799999999999999999999997 799999763
No 478
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.38 E-value=0.017 Score=38.33 Aligned_cols=34 Identities=38% Similarity=0.629 Sum_probs=27.8
Q ss_pred cCcccEEEECCChhHHHHHHHHHHCCCeEEEEee
Q 038157 33 IQSINVAVIGAGAAGLVAARELRREGHKVVVLEK 66 (207)
Q Consensus 33 ~~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~ 66 (207)
....+|.|||+|-.|..+|..|.+.|+.|.-+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYS 41 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESS
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 3457999999999999999999999999877754
No 479
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.36 E-value=0.026 Score=43.43 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=28.2
Q ss_pred EEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 38 VAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 38 v~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
|.|||+|..|..+|..++.+|+ +|+|+|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999998876 999999864
No 480
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.35 E-value=0.037 Score=42.49 Aligned_cols=35 Identities=34% Similarity=0.516 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
...+++|||.|.+|..++..|.+.|.+|.+++|..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35799999999999999999999999999999874
No 481
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.34 E-value=0.025 Score=48.73 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..|.|||+|..|...|..++..|++|+|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999873
No 482
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.34 E-value=0.031 Score=45.72 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHHHC--CCeEEEEeeCCC
Q 038157 37 NVAVIGAGAAGLVAARELRRE--GHKVVVLEKSNR 69 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~--g~~v~liE~~~~ 69 (207)
+|+|||.|..|+.+|..|++. |++|+.+|.+..
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 699999999999999999998 578999997643
No 483
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.33 E-value=0.028 Score=43.30 Aligned_cols=32 Identities=34% Similarity=0.656 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
.|.|+|+|..|+..|+.|++.|..|+++-|++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 68999999999999999999998888888875
No 484
>PRK08223 hypothetical protein; Validated
Probab=95.32 E-value=0.036 Score=42.11 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=31.8
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.+..|+|||+|-.|+.+|..|++.|+ ++.|+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 45799999999999999999999997 999999864
No 485
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.32 E-value=0.034 Score=45.89 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
.|.|||+|..|...|..|++.|++|.++|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999864
No 486
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=95.27 E-value=0.028 Score=48.45 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..|.|||+|..|...|..++..|++|+++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999863
No 487
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.25 E-value=0.058 Score=43.06 Aligned_cols=31 Identities=48% Similarity=0.635 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHCCCeEEEEeeCCCCCceee
Q 038157 45 AAGLVAARELRREGHKVVVLEKSNRIGGTWV 75 (207)
Q Consensus 45 ~aG~~~A~~l~~~g~~v~liE~~~~~gg~~~ 75 (207)
+||++||+.|++.|.+|+|+|+++.+||.+.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~ 31 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIR 31 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceE
Confidence 5899999999999999999999999998754
No 488
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.25 E-value=0.04 Score=40.70 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHHCCC-eEEEEeeCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGH-KVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~~ 68 (207)
.|+|||+|..|+.++..|+..|. +++|+|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999996 999999864
No 489
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.24 E-value=0.036 Score=45.11 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
..++|+|+|.+|.++|..|++.|.+|.+.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999999753
No 490
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.15 E-value=0.032 Score=44.48 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC
Q 038157 37 NVAVIGAGAAGLVAARELRREGHKVVVLEKSNR 69 (207)
Q Consensus 37 dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~ 69 (207)
+|.|||.|..|+.+|..++. |++|+.+|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 58999999999999988875 999999998743
No 491
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.11 E-value=0.046 Score=39.95 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=29.2
Q ss_pred cEEEEC-CChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 37 NVAVIG-AGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 37 dv~IIG-~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
+|.||| +|..|.+.|..|++.|++|.+++|+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998864
No 492
>PRK07208 hypothetical protein; Provisional
Probab=95.09 E-value=0.19 Score=41.29 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHY 198 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~ 198 (207)
..+.+.|.+.+++.|.+ ++++++|+++..++++...+...++.+++...+.||.||.|...+
T Consensus 218 ~~l~~~L~~~l~~~g~~--i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGK--VVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCE--EEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 46778888888888888 999999999999873323233322222223468899999998754
No 493
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.08 E-value=0.046 Score=42.17 Aligned_cols=33 Identities=39% Similarity=0.531 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHHHHCCC--eEEEEeeCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGH--KVVVLEKSN 68 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~--~v~liE~~~ 68 (207)
.+|.|||+|..|.+.|..|.+.|. +|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999885 899999863
No 494
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.06 E-value=0.045 Score=43.13 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=31.3
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCC-eEEEEeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGH-KVVVLEKS 67 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~-~v~liE~~ 67 (207)
.+..|+|||+|-.|+.+|..|++.|+ +++|+|.+
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45799999999999999999999997 99999976
No 495
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.06 E-value=0.048 Score=41.64 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=32.0
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeCC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKSN 68 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~ 68 (207)
....++|+|.|..|.++|..|...|.+|.+++|..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999999864
No 496
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.04 E-value=0.072 Score=32.66 Aligned_cols=32 Identities=41% Similarity=0.589 Sum_probs=29.2
Q ss_pred cccEEEECCChhHHHHHHHHHHC-CCeEEEEee
Q 038157 35 SINVAVIGAGAAGLVAARELRRE-GHKVVVLEK 66 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~-g~~v~liE~ 66 (207)
..+++|+|.|.+|..++..|.+. +.+|.+++|
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45899999999999999999998 679999988
No 497
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.03 E-value=0.054 Score=39.60 Aligned_cols=34 Identities=29% Similarity=0.576 Sum_probs=30.6
Q ss_pred CcccEEEECCChhHHHHHHHHHHCCCeEEEEeeC
Q 038157 34 QSINVAVIGAGAAGLVAARELRREGHKVVVLEKS 67 (207)
Q Consensus 34 ~~~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~ 67 (207)
....|+|||||.+++.-+..|.+.|.+|+|+-..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3568999999999999999999999999999654
No 498
>PRK07233 hypothetical protein; Provisional
Probab=95.01 E-value=0.15 Score=41.09 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHcCCceeEEeceEEEEEEeecCCcEEEEEEecCCCceeEEEeCEEEEccCCC
Q 038157 135 AEVLRYLEEFVSEFGIDEMVRFESEVVNVGLMENNKWKVKSKLRNGDGDCDEIYDAVVVCNGHY 198 (207)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~v~~~~~V~~l~~~~~~~~~v~~~~~~~~~~~~i~a~~VV~AtG~~ 198 (207)
..+.+.|.+.+++.+.+ ++++++|++++.++ +.+.+...++ ..+.+|.||+|....
T Consensus 198 ~~l~~~l~~~l~~~g~~--v~~~~~V~~i~~~~-~~~~~~~~~~-----~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGE--IRLGTPVTSVVIDG-GGVTGVEVDG-----EEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCce--EEeCCCeeEEEEcC-CceEEEEeCC-----ceEECCEEEECCCHH
Confidence 46778888888888888 99999999999876 5554443332 368999999999854
No 499
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.01 E-value=0.057 Score=41.94 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHHHHHHCC-CeEEEEeeCC
Q 038157 35 SINVAVIGAGAAGLVAARELRREG-HKVVVLEKSN 68 (207)
Q Consensus 35 ~~dv~IIG~G~aG~~~A~~l~~~g-~~v~liE~~~ 68 (207)
...|+|||+|..|..+|+.++..| .++.|+|...
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 358999999999999999999988 5899999864
No 500
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.00 E-value=0.059 Score=43.85 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHHCCCeEEEEeeCCC
Q 038157 36 INVAVIGAGAAGLVAARELRREGHKVVVLEKSNR 69 (207)
Q Consensus 36 ~dv~IIG~G~aG~~~A~~l~~~g~~v~liE~~~~ 69 (207)
..++|+|.|.+|.++|..|+++|++|.+.|....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4799999999999999999999999999997543
Done!