Query 038158
Match_columns 123
No_of_seqs 142 out of 708
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:10:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01397 Terpene_synth: Terpen 100.0 1.5E-43 3.2E-48 271.6 8.7 112 2-116 31-153 (183)
2 cd00684 Terpene_cyclase_plant_ 100.0 1.3E-38 2.9E-43 274.7 7.7 113 2-116 36-161 (542)
3 PLN02279 ent-kaur-16-ene synth 100.0 1.9E-29 4.2E-34 226.4 6.5 102 14-116 268-379 (784)
4 PLN02592 ent-copalyl diphospha 99.9 4.3E-28 9.2E-33 217.9 6.7 102 14-116 308-425 (800)
5 KOG3906 Tryptophan 2,3-dioxyge 71.7 5.6 0.00012 33.5 3.8 97 4-110 87-210 (399)
6 PF11000 DUF2840: Protein of u 38.2 20 0.00043 27.2 1.5 15 19-33 97-111 (149)
7 PF15088 NADH_dh_m_C1: NADH de 28.7 26 0.00057 21.7 0.7 16 64-79 24-41 (49)
8 smart00544 MA3 Domain in DAP-5 24.9 1.3E+02 0.0028 20.1 3.7 40 3-43 2-41 (113)
9 PF02847 MA3: MA3 domain; Int 24.3 1.2E+02 0.0026 20.2 3.4 45 2-47 1-46 (113)
10 PF13090 PP_kinase_C: Polyphos 20.1 70 0.0015 27.4 1.8 28 86-115 208-235 (352)
11 COG1400 SEC65 Signal recogniti 20.1 70 0.0015 22.3 1.5 14 21-34 36-49 (93)
No 1
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=1.5e-43 Score=271.63 Aligned_cols=112 Identities=45% Similarity=0.660 Sum_probs=98.5
Q ss_pred cHHHHHHHHhhcC-CccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccccCCchhhhhHHhhhhhhc-----
Q 038158 2 QKGKVKTITNDAT-KPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQH----- 75 (123)
Q Consensus 2 lkeeVr~ml~~~~-~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqh----- 75 (123)
||++||.|+.... +++++|+|||+||||||+|||++||+++|+++|+.|..... ...|||+|||+|||||||
T Consensus 31 Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~--~~~dL~~~AL~FRLLRqhGy~VS 108 (183)
T PF01397_consen 31 LKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNE--EIDDLYTTALRFRLLRQHGYYVS 108 (183)
T ss_dssp HHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSH--TSSCHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhcccccc--ccCchhHHHHHHHHHHHcCCccc
Confidence 7999999998764 79999999999999999999999999999999999876431 235999999999999999
Q ss_pred -ccccccccC----CcccccCchHHHHHHHHhhccccccccccccc
Q 038158 76 -EVFNGFKET----KSYLISDDFNGILSLYVASYYSLIRRRKRHGE 116 (123)
Q Consensus 76 -DvF~~F~d~----~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e 116 (123)
|||++|+|+ +.++ ++|++||||||||||+++|||.+|.+.
T Consensus 109 ~DvF~~F~d~~g~F~~~l-~~Dv~glLsLYeAS~l~~~gE~iLdeA 153 (183)
T PF01397_consen 109 SDVFNKFKDEKGNFKESL-SNDVKGLLSLYEASHLRFHGEDILDEA 153 (183)
T ss_dssp GGGGGGGBETTSSBSGGG-GGHHHHHHHHHHHHTT--TT-HHHHHH
T ss_pred HHHHhCcccCCCccchhh-hHhHHHHHHHHHHHHccCCChHHHHHH
Confidence 999999998 4566 789999999999999999999988764
No 2
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.3e-38 Score=274.72 Aligned_cols=113 Identities=39% Similarity=0.566 Sum_probs=100.4
Q ss_pred cHHHHHHHHhh---cCCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccccCCchhhhhHHhhhhhhc---
Q 038158 2 QKGKVKTITND---ATKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQH--- 75 (123)
Q Consensus 2 lkeeVr~ml~~---~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqh--- 75 (123)
||++||+|+.. ..|++++|++||+||||||+|||++||+++|+++|+.|...+. ....|||+|||+|||||||
T Consensus 36 lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~-~~~~dl~~~al~FRlLR~~Gy~ 114 (542)
T cd00684 36 LKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGE-SNEDDLYTTALGFRLLRQHGYN 114 (542)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhccccc-ccCCCHHHHHHHHHHHHHcCCC
Confidence 79999999986 5689999999999999999999999999999999998864321 2347999999999999999
Q ss_pred ---ccccccccC----CcccccCchHHHHHHHHhhccccccccccccc
Q 038158 76 ---EVFNGFKET----KSYLISDDFNGILSLYVASYYSLIRRRKRHGE 116 (123)
Q Consensus 76 ---DvF~~F~d~----~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e 116 (123)
|||++|+|+ +.++ .+|++||||||||||+++|||.+|.+.
T Consensus 115 vs~dvf~~F~~~~g~f~~~~-~~d~~g~l~Ly~As~l~~~gE~iLdeA 161 (542)
T cd00684 115 VSSDVFKKFKDEDGKFKESL-TQDVKGMLSLYEASHLSFPGEDILDEA 161 (542)
T ss_pred cCHHHHhhhcCCCCCcCchh-hhhhHHHHHHHHHhhcCCCCcHHHHHH
Confidence 999999988 4455 679999999999999999999998654
No 3
>PLN02279 ent-kaur-16-ene synthase
Probab=99.96 E-value=1.9e-29 Score=226.36 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=88.7
Q ss_pred CCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccccCCchhhhhHHhhhhhhc------ccccccccC--C
Q 038158 14 TKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKKENVRVHATSLEFGLLRQH------EVFNGFKET--K 85 (123)
Q Consensus 14 ~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqh------DvF~~F~d~--~ 85 (123)
.++++++++||+||||||+|||++||+++|+.+|+.|..... ....|+++|||+||||||| |||++|+|+ +
T Consensus 268 ~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~-~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~~F~ 346 (784)
T PLN02279 268 LDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEE-EIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDHFS 346 (784)
T ss_pred ccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCCccc
Confidence 578999999999999999999999999999999998864321 2357999999999999999 999999987 3
Q ss_pred cccc--cCchHHHHHHHHhhccccccccccccc
Q 038158 86 SYLI--SDDFNGILSLYVASYYSLIRRRKRHGE 116 (123)
Q Consensus 86 ~~l~--~~D~~glLsLYeAS~L~~~gE~~l~~e 116 (123)
.++. .+|++||||||||||+++|||.+|.+.
T Consensus 347 ~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA 379 (784)
T PLN02279 347 DSLGGYLKDTGAVLELFRASQISYPDESLLEKQ 379 (784)
T ss_pred chhcccchhhHHHHHHHHHHhcCCCccHHHHHH
Confidence 3320 389999999999999999999998754
No 4
>PLN02592 ent-copalyl diphosphate synthase
Probab=99.94 E-value=4.3e-28 Score=217.89 Aligned_cols=102 Identities=23% Similarity=0.339 Sum_probs=87.7
Q ss_pred CCccchhhHHHHHHhcCCccchHHHHHHHHHHHHhhcCCCcccc----cCCchhhhhHHhhhhhhc------cccccccc
Q 038158 14 TKPLHQLELIDTLQGLGLAYHFESEIRNILRNIYNKNKDDKWKK----ENVRVHATSLEFGLLRQH------EVFNGFKE 83 (123)
Q Consensus 14 ~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~----~~~dL~~~AL~FRLLRqh------DvF~~F~d 83 (123)
.+++++|++||+||||||+|||++||+++|+.+|+.|...+.++ ...|+++|||+||||||| |||++|++
T Consensus 308 ~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~ 387 (800)
T PLN02592 308 VDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK 387 (800)
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC
Confidence 57899999999999999999999999999999999876532211 247999999999999999 99999987
Q ss_pred C------CcccccCchHHHHHHHHhhccccccccccccc
Q 038158 84 T------KSYLISDDFNGILSLYVASYYSLIRRRKRHGE 116 (123)
Q Consensus 84 ~------~~~l~~~D~~glLsLYeAS~L~~~gE~~l~~e 116 (123)
+ .+.. .+|++|||+||||||+++|||.+|.+.
T Consensus 388 ~g~F~~~~ge~-~~Dv~glL~LYeAS~l~~~gE~iLdeA 425 (800)
T PLN02592 388 GGEFFCFAGQS-TQAVTGMFNLYRASQVLFPGEKILENA 425 (800)
T ss_pred CCCcccccccc-ccchHHHHHHHHHHhcCCCcchHHHHH
Confidence 5 2223 589999999999999999999998654
No 5
>KOG3906 consensus Tryptophan 2,3-dioxygenase [Amino acid transport and metabolism]
Probab=71.69 E-value=5.6 Score=33.47 Aligned_cols=97 Identities=23% Similarity=0.309 Sum_probs=54.0
Q ss_pred HHHHHHHhhc-CCccchhhHHHHHHhcCCccchHHHHHHHHHHH-------HhhcCCCcccccCCchhhhhHHhhhhh--
Q 038158 4 GKVKTITNDA-TKPLHQLELIDTLQGLGLAYHFESEIRNILRNI-------YNKNKDDKWKKENVRVHATSLEFGLLR-- 73 (123)
Q Consensus 4 eeVr~ml~~~-~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i-------~~~~~~~~~~~~~~dL~~~AL~FRLLR-- 73 (123)
..||.|+.++ .|-...|++|-.+-|.-+=--.-.|=-.+|+.+ |+.+.... . ---||.||||-
T Consensus 87 DsvR~~l~~~v~DEtktLkiVsrl~Rv~~ILkLLv~Q~~iLeTMtpLDF~DFRkYL~PA-----S--GFQSLQFRllENK 159 (399)
T KOG3906|consen 87 DSVRKLLNNTVVDETKTLKIVSRLDRVTKILKLLVEQITILETMTPLDFVDFRKYLTPA-----S--GFQSLQFRLLENK 159 (399)
T ss_pred HHHHHHhcchhhcchhHHHHHHhHHHHHHHHHHHHHHhhHHhhcCccchHHHHHhcCcc-----c--cchhhhHHHHhhh
Confidence 4688898875 466666777776666432111111111222222 22221110 1 12489999984
Q ss_pred -------------hc--ccccccccC--CcccccCchHHHHHHHHhhccccccc
Q 038158 74 -------------QH--EVFNGFKET--KSYLISDDFNGILSLYVASYYSLIRR 110 (123)
Q Consensus 74 -------------qh--DvF~~F~d~--~~~l~~~D~~glLsLYeAS~L~~~gE 110 (123)
|| |||+. + +....++.-+++|+|-|+=--++||=
T Consensus 160 lGVlqe~Rv~YN~qhY~dvF~d---ee~~~l~~sE~eksLLeLve~WLERTPGL 210 (399)
T KOG3906|consen 160 LGVLQERRVKYNAQHYKDVFND---EELKTLNVSEEEKSLLELVESWLERTPGL 210 (399)
T ss_pred hhhhhhhhccccHHHhhhccCc---hhhHhhhcccccchHHHHHHHHHhcCCCC
Confidence 33 77653 4 33332566799999999988888773
No 6
>PF11000 DUF2840: Protein of unknown function (DUF2840); InterPro: IPR021263 This bacterial family of proteins have no known function.
Probab=38.24 E-value=20 Score=27.16 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=13.1
Q ss_pred hhhHHHHHHhcCCcc
Q 038158 19 QLELIDTLQGLGLAY 33 (123)
Q Consensus 19 ~L~lID~LqRLGi~y 33 (123)
-|..||+++.|||+-
T Consensus 97 VL~~IDaiEalGidp 111 (149)
T PF11000_consen 97 VLQAIDAIEALGIDP 111 (149)
T ss_pred HHHHHhHHHHcCCCh
Confidence 488999999999974
No 7
>PF15088 NADH_dh_m_C1: NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Probab=28.71 E-value=26 Score=21.71 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=13.2
Q ss_pred hhhHHhhhhhhc--cccc
Q 038158 64 ATSLEFGLLRQH--EVFN 79 (123)
Q Consensus 64 ~~AL~FRLLRqh--DvF~ 79 (123)
++.|+..|++|| ||..
T Consensus 24 s~flW~~L~kqHneDVlE 41 (49)
T PF15088_consen 24 SVFLWIYLIKQHNEDVLE 41 (49)
T ss_pred HHHHHHHHHHhhchHHHH
Confidence 467899999999 7764
No 8
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=24.95 E-value=1.3e+02 Score=20.14 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCccchhhHHHHHHhcCCccchHHHHHHHH
Q 038158 3 KGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEIRNIL 43 (123)
Q Consensus 3 keeVr~ml~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L 43 (123)
+..+...+.+..+.-.--+.+..|+.|+++ +|..|+=..+
T Consensus 2 ~k~i~~~l~ey~~~~D~~ea~~~l~~L~~~-~~~~~vv~~~ 41 (113)
T smart00544 2 KKKIFLIIEEYLSSGDTDEAVHCLLELKLP-EQHHEVVKVL 41 (113)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 456666666543333556788899999999 6887765543
No 9
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.27 E-value=1.2e+02 Score=20.23 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=27.8
Q ss_pred cHHHHHHHHhhcCCccchhhHHHHHHhcCCccchHHHH-HHHHHHHH
Q 038158 2 QKGKVKTITNDATKPLHQLELIDTLQGLGLAYHFESEI-RNILRNIY 47 (123)
Q Consensus 2 lkeeVr~ml~~~~~~~~~L~lID~LqRLGi~yhFe~EI-~~~L~~i~ 47 (123)
+|..|+..+.+..+....-+.+..|+.|+++ .+..|+ ..++....
T Consensus 1 ~rk~i~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~l 46 (113)
T PF02847_consen 1 LRKKIFSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECAL 46 (113)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHh
Confidence 4677888887643333456788899999999 666654 33444443
No 10
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=20.14 E-value=70 Score=27.40 Aligned_cols=28 Identities=29% Similarity=0.113 Sum_probs=19.5
Q ss_pred cccccCchHHHHHHHHhhcccccccccccc
Q 038158 86 SYLISDDFNGILSLYVASYYSLIRRRKRHG 115 (123)
Q Consensus 86 ~~l~~~D~~glLsLYeAS~L~~~gE~~l~~ 115 (123)
.+| .|..-+-.||+||+-+++=+-+..|
T Consensus 208 NsL--~D~~iI~~Ly~AS~AGV~I~LiVRG 235 (352)
T PF13090_consen 208 NSL--TDPEIIDKLYEASQAGVKIDLIVRG 235 (352)
T ss_dssp S-B----HHHHHHHHHHHHTTEEEEEEESS
T ss_pred cCC--CCHHHHHHHHHHHhCCCEEEEEEec
Confidence 455 7999999999999988865555544
No 11
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=20.12 E-value=70 Score=22.35 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.6
Q ss_pred hHHHHHHhcCCccc
Q 038158 21 ELIDTLQGLGLAYH 34 (123)
Q Consensus 21 ~lID~LqRLGi~yh 34 (123)
+++++++.||+.+-
T Consensus 36 ei~~a~~~LGl~~~ 49 (93)
T COG1400 36 EIAEALRELGLKPK 49 (93)
T ss_pred HHHHHHHHcCCCee
Confidence 57889999999883
Done!