BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038159
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 33 PMQQKVTKL-HFFLHDILSGPNPSAVMVAHANLTDGDKSPTPFGSVFA--VDDALRVGPE 89
P Q + KL H+ H +++GP + A + TD P G A D LR GPE
Sbjct: 32 PAQNRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPIGPPPAGFRDILLREGPE 91
Query: 90 SNSEIIGNAQGLYVSSS--QDANN 111
+ + N GL + + +DA+
Sbjct: 92 GFARAVRNHPGLLLMDTTFRDAHQ 115
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 33 PMQQKVTKL-HFFLHDILSGPNPSAVMVAHANLTDGDKSPTPFGSVFA--VDDALRVGPE 89
P Q + KL H+ H +++GP + A + TD P G A D LR GPE
Sbjct: 32 PAQNRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPIGPPPAGFRDILLREGPE 91
Query: 90 SNSEIIGNAQGLYVSSS--QDANN 111
+ + N GL + + +DA+
Sbjct: 92 GFARAVRNHPGLLLMDTTFRDAHQ 115
>pdb|2XET|A Chain A, Conserved Hydrophobic Clusters On The Surface Of The Caf1a
Usher C-Terminal Domain Are Important For F1 Antigen
Assembly
pdb|2XET|B Chain B, Conserved Hydrophobic Clusters On The Surface Of The Caf1a
Usher C-Terminal Domain Are Important For F1 Antigen
Assembly
Length = 89
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 63 NLTDGDKSPTPFGSVFAVDDALRVGPESNSEIIGNAQGLYVS 104
+L D P PFGS+ ++ G S+S I+G+ G+Y++
Sbjct: 7 HLKRSDNKPVPFGSIVTIE-----GQSSSSGIVGDNSGVYLT 43
>pdb|2DX5|A Chain A, The Complex Structure Between The Mouse Eap45-Glue Domain
And Ubiquitin
Length = 139
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 10 AMILCVAAATAQGEYYSESVAAVPMQQKVTKLHFFLHDILSGPNPSAVMVAHANLTDGDK 69
++L + + +E A+P+ Q V F+ + +G SA +V H + +K
Sbjct: 39 TLLLSTHRLIWRDQKNNECCMAIPLSQIV-----FIEEQAAGIGKSAKIVVHLHPAPSNK 93
Query: 70 SPTPFGS 76
P PF S
Sbjct: 94 EPGPFQS 100
>pdb|1Y8A|A Chain A, Structure Of Gene Product Af1437 From Archaeoglobus
Fulgidus
Length = 332
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 133 SVFSRNQVSEPSRELAVVGGRGKFRMARGFAELKTAYFNGTNGDAIIEFNV 183
+FSR++V + + VG K ++ RG+ E K F GD+I ++ +
Sbjct: 186 ELFSRSEVRKIVESVKAVGAGEKAKIMRGYCESKGIDFPVVVGDSISDYKM 236
>pdb|4EPA|A Chain A, The Crystal Structure Of The Ferric Yersiniabactin Uptake
Receptor Fyua From Yersinia Pestis
Length = 655
Score = 26.6 bits (57), Expect = 7.7, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 17/77 (22%)
Query: 50 SGPNPSAVMVAHANLTDGDKSPTPFGSVFAVDDALRVGPESNSEIIGNAQGLY------- 102
S N S+ +V+ L+D V A D RV P N E GN L+
Sbjct: 27 SANNVSSTVVSAPELSDA--------GVTASDKLPRVLPGLNIENSGNX--LFSTISLRG 76
Query: 103 VSSSQDANNFAIVMYID 119
VSS+QD N A+ +Y+D
Sbjct: 77 VSSAQDFYNPAVTLYVD 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,400,836
Number of Sequences: 62578
Number of extensions: 209680
Number of successful extensions: 327
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 9
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)