BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038159
         (188 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 13/153 (8%)

Query: 30  AAVPMQQKVTK----LHFFLHDIL-SGPN----PSAVMVAHANLTDGDKSP-TPFGSVFA 79
           +A+P ++K  K    L F+ HDIL +G N     SA++ A   ++    +P + FG++  
Sbjct: 19  SAIPNKRKPYKPCKNLVFYFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIV 78

Query: 80  VDDALRVGPESNSEIIGNAQGLYVSSSQDANNFAIVMYIDFALTSGEFNGSSFSVFSRNQ 139
            DD + +    +S+ +G AQG Y+  ++  N +   +   F L S    G+  +    + 
Sbjct: 79  FDDPITLSHSLSSKQVGRAQGFYIYDTK--NTYTSWLSFTFVLNSTHHQGT-ITFAGADP 135

Query: 140 VSEPSRELAVVGGRGKFRMARGFAELKTAYFNG 172
           +   +R+++V GG G F M RG A + T  F G
Sbjct: 136 IVAKTRDISVTGGTGDFFMHRGIATITTDAFEG 168


>sp|P26949|CAF1A_YERPE F1 capsule-anchoring protein OS=Yersinia pestis GN=caf1A PE=1 SV=2
          Length = 833

 Score = 32.0 bits (71), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 15/63 (23%)

Query: 52  PNPSAVMVAHAN----------LTDGDKSPTPFGSVFAVDDALRVGPESNSEIIGNAQGL 101
           P   AV++A  N          L   D  P PFGS+  ++     G  S+S I+G+  G+
Sbjct: 730 PTKGAVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIE-----GQSSSSGIVGDNSGV 784

Query: 102 YVS 104
           Y++
Sbjct: 785 YLT 787


>sp|Q54JA4|SIBD_DICDI Integrin beta-like protein D OS=Dictyostelium discoideum GN=sibD PE=1
            SV=1
          Length = 1957

 Score = 30.4 bits (67), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 10/70 (14%)

Query: 70   SPTPFGSVFA------VDDALRVGPE---SNSEIIGNAQGLYVSSSQDANNFAIVMYIDF 120
            +PTPF +V +      VDD+ +  P+   S  ++IGN Q  Y+++    N  ++ +  D 
Sbjct: 1319 TPTPFSNVLSTFSINCVDDSEKTTPKGVLSTGDVIGNVQYYYINTPPKTNISSVKLSQD- 1377

Query: 121  ALTSGEFNGS 130
            +  +  F GS
Sbjct: 1378 SFIAFSFEGS 1387


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,808,187
Number of Sequences: 539616
Number of extensions: 2706814
Number of successful extensions: 5431
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5429
Number of HSP's gapped (non-prelim): 10
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)