Query 038159
Match_columns 188
No_of_seqs 116 out of 553
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:11:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 4E-53 8.6E-58 335.6 19.5 144 37-187 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.6 0.002 4.4E-08 52.1 12.6 121 35-170 4-127 (176)
3 PLN02343 allene oxide cyclase 96.9 0.024 5.2E-07 47.7 12.2 92 72-170 85-178 (229)
4 PF11528 DUF3224: Protein of u 85.2 15 0.00032 28.9 9.9 90 92-187 40-133 (134)
5 PF07172 GRP: Glycine rich pro 52.8 6 0.00013 29.4 0.6 12 1-12 1-12 (95)
6 PF10731 Anophelin: Thrombin i 24.7 52 0.0011 22.7 1.6 20 1-22 1-20 (65)
7 PF02402 Lysis_col: Lysis prot 23.7 80 0.0017 20.5 2.2 26 1-27 1-26 (46)
8 PF06347 SH3_4: Bacterial SH3 21.4 76 0.0016 20.2 1.9 17 83-99 6-22 (55)
9 PF08239 SH3_3: Bacterial SH3 20.6 89 0.0019 19.5 2.1 16 83-98 4-19 (55)
10 PF06597 Clostridium_P47: Clos 12.9 7.3E+02 0.016 23.3 6.9 53 128-186 33-92 (456)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=4e-53 Score=335.62 Aligned_cols=144 Identities=51% Similarity=0.914 Sum_probs=134.7
Q ss_pred ceeEEEEEeeeecCCCCcceEEEeccCCcCCCCCCCCCeeEEEEeeeeeeCCCCCCcceeeeeEEEEEecCCCCceeEEE
Q 038159 37 KVTKLHFFLHDILSGPNPSAVMVAHANLTDGDKSPTPFGSVFAVDDALRVGPESNSEIIGNAQGLYVSSSQDANNFAIVM 116 (188)
Q Consensus 37 k~t~l~fY~Hd~~~g~n~t~~~v~~~~~~~~~~~~~~FG~~~v~Dd~lt~Gp~~~Sk~VGRaqG~~~~~s~~~~~~~~~~ 116 (188)
|++||+|||||+++|||+|++.|+.++ .+ ...+||+++|+||||||||+++||+||||||+|+.++++ + .+|++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~--~~--~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~-~-~~~~~ 74 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPP--GP--SSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLD-G-SSWFM 74 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCC--CC--CCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeeccc-C-ccEEE
Confidence 689999999999999999999999886 32 223899999999999999999999999999999999999 6 89999
Q ss_pred EEEEEEccCccCCceEEEEcccCCCCCceeeEEEccccceeceeEEEEEEEEEecCCCCceEEEEEEEEEe
Q 038159 117 YIDFALTSGEFNGSSFSVFSRNQVSEPSRELAVVGGRGKFRMARGFAELKTAYFNGTNGDAIIEFNVSLFH 187 (188)
Q Consensus 117 ~~~~vF~~g~~~GSTL~v~G~~~~~~~~~E~~VVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~e~~v~v~h 187 (188)
+++++|++++||||||+++|+++..+++||||||||||+|||||||++++++ .+...+++|+||||||+|
T Consensus 75 ~~~~vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 75 SFTLVFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEEEEEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 9999999999999999999999988999999999999999999999999999 345678899999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.62 E-value=0.002 Score=52.11 Aligned_cols=121 Identities=22% Similarity=0.328 Sum_probs=74.8
Q ss_pred CCceeEEEEE-eeeecCCCCcceEEEeccCCcCCCCCCCCCeeEEEEeeeeeeCCCCCCcceeeeeEEEEEecCCC--Cc
Q 038159 35 QQKVTKLHFF-LHDILSGPNPSAVMVAHANLTDGDKSPTPFGSVFAVDDALRVGPESNSEIIGNAQGLYVSSSQDA--NN 111 (188)
Q Consensus 35 ~~k~t~l~fY-~Hd~~~g~n~t~~~v~~~~~~~~~~~~~~FG~~~v~Dd~lt~Gp~~~Sk~VGRaqG~~~~~s~~~--~~ 111 (188)
+.|...|++| +.|.-.| .|.-.+..+ .+....|+.+=|.|+|++|.- .+-+|--+|+-+.-...+ .+
T Consensus 4 p~kvqel~vyeiNErdR~-SPa~L~ls~-------k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~G 73 (176)
T PF06351_consen 4 PTKVQELSVYEINERDRG-SPAYLRLSQ-------KSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKG 73 (176)
T ss_dssp ----EEEEEEEE--S-S---S--B--SS-------SSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTE
T ss_pred ccceEEEEEEEEcccccC-CCcEEEccc-------ccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCC
Confidence 4456677888 4444332 122233321 233568999999999999976 688999999977643211 11
Q ss_pred eeEEEEEEEEEccCccCCceEEEEcccCCCCCceeeEEEccccceeceeEEEEEEEEEe
Q 038159 112 FAIVMYIDFALTSGEFNGSSFSVFSRNQVSEPSRELAVVGGRGKFRMARGFAELKTAYF 170 (188)
Q Consensus 112 ~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~~E~~VVGGTG~Fr~ArGya~~~t~~~ 170 (188)
..+=-.+++.|-+ | | .|+++|..... ...-++|.||||-|+.|+|-+++..+-+
T Consensus 74 dryEaiySfyfGd--y-G-hISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 74 DRYEAIYSFYFGD--Y-G-HISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEEEEEEE-GG--G-E-EEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred ceEEEEEEEEecc--c-c-eEEEecccccc-cceeEEEeccCceeecceEEEEEEEeec
Confidence 4455666777743 3 4 79999998654 4678999999999999999999988754
No 3
>PLN02343 allene oxide cyclase
Probab=96.94 E-value=0.024 Score=47.66 Aligned_cols=92 Identities=24% Similarity=0.326 Sum_probs=71.4
Q ss_pred CCCeeEEEEeeeeeeCCCCCCcceeeeeEEEEEecCCC--CceeEEEEEEEEEccCccCCceEEEEcccCCCCCceeeEE
Q 038159 72 TPFGSVFAVDDALRVGPESNSEIIGNAQGLYVSSSQDA--NNFAIVMYIDFALTSGEFNGSSFSVFSRNQVSEPSRELAV 149 (188)
Q Consensus 72 ~~FG~~~v~Dd~lt~Gp~~~Sk~VGRaqG~~~~~s~~~--~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~~E~~V 149 (188)
...|+++=|.+.|++|.- -|.+|--.|+-+.-...+ ++..+=..+++.|-| | | .|++||....-+ ..-++|
T Consensus 85 ~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGD--y-G-HisvqGpyltye-Dt~Lai 157 (229)
T PLN02343 85 NALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGD--Y-G-HISVQGPYLTYE-DTYLAI 157 (229)
T ss_pred ccccceeccccccccchh--hhhhcccceeEEEEEeccccCCceeEEEEEEEecC--c-c-eeEEeccccccc-cceEEe
Confidence 568999999999999863 577899999876543321 114566778888844 3 4 699999987543 568999
Q ss_pred EccccceeceeEEEEEEEEEe
Q 038159 150 VGGRGKFRMARGFAELKTAYF 170 (188)
Q Consensus 150 VGGTG~Fr~ArGya~~~t~~~ 170 (188)
.||+|.|..|+|-+++..+.+
T Consensus 158 TGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 158 TGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred ecCcceeecceeEEEEeeeee
Confidence 999999999999999987764
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=85.21 E-value=15 Score=28.89 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=52.8
Q ss_pred CcceeeeeEEEEEecCCCCceeEEEEEEEEE-ccCccCCc-eEEEEcccCCCCCceeeEEE--ccccceeceeEEEEEEE
Q 038159 92 SEIIGNAQGLYVSSSQDANNFAIVMYIDFAL-TSGEFNGS-SFSVFSRNQVSEPSRELAVV--GGRGKFRMARGFAELKT 167 (188)
Q Consensus 92 Sk~VGRaqG~~~~~s~~~~~~~~~~~~~~vF-~~g~~~GS-TL~v~G~~~~~~~~~E~~VV--GGTG~Fr~ArGya~~~t 167 (188)
-.+.|++++-|+.+-...+ .+-++.+-.+= +-...+|| .|+-.|.........+|-|| -|||++...+|-..++.
T Consensus 40 G~l~Gts~~~~L~~y~~~g-~a~yva~E~~~Gtl~Gr~GsFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~ 118 (134)
T PF11528_consen 40 GDLEGTSTGEYLMAYDPDG-SAGYVAFERFTGTLDGRSGSFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITI 118 (134)
T ss_dssp TTEEEEEEEEEEEEEECTT-EEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCC-cEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEE
Confidence 4467888888777654423 45555443211 11223554 24444555433445789999 99999999999998875
Q ss_pred EEecCCCCceEEEEEEEEEe
Q 038159 168 AYFNGTNGDAIIEFNVSLFH 187 (188)
Q Consensus 168 ~~~~~~~~~~v~e~~v~v~h 187 (188)
.. +...++|+..+-+
T Consensus 119 ~~-----g~h~y~f~y~l~d 133 (134)
T PF11528_consen 119 DE-----GQHAYDFEYTLPD 133 (134)
T ss_dssp ET-----TCEEEEEEEEEEE
T ss_pred CC-----CCceeeEEEECCC
Confidence 32 3457788877643
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=52.79 E-value=6 Score=29.36 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=6.8
Q ss_pred CCcceeehhhHH
Q 038159 1 MRSMVNFCLAMI 12 (188)
Q Consensus 1 ~~~~~~~~~~~~ 12 (188)
|++|.+|.|.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 887774444333
No 6
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=24.74 E-value=52 Score=22.73 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=11.4
Q ss_pred CCcceeehhhHHHHHHHHhhcc
Q 038159 1 MRSMVNFCLAMILCVAAATAQG 22 (188)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (188)
|+.|. .++-+||++.++..+
T Consensus 1 MA~Kl--~vialLC~aLva~vQ 20 (65)
T PF10731_consen 1 MASKL--IVIALLCVALVAIVQ 20 (65)
T ss_pred Ccchh--hHHHHHHHHHHHHHh
Confidence 66665 455566775555444
No 7
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=23.65 E-value=80 Score=20.48 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=13.9
Q ss_pred CCcceeehhhHHHHHHHHhhcccceee
Q 038159 1 MRSMVNFCLAMILCVAAATAQGEYYSE 27 (188)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (188)
|| |..++.++++.++.++-+.+|-.|
T Consensus 1 Mk-Ki~~~~i~~~~~~L~aCQaN~iRD 26 (46)
T PF02402_consen 1 MK-KIIFIGIFLLTMLLAACQANYIRD 26 (46)
T ss_pred Cc-EEEEeHHHHHHHHHHHhhhcceec
Confidence 77 443555555444555555555554
No 8
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=21.39 E-value=76 Score=20.19 Aligned_cols=17 Identities=41% Similarity=0.726 Sum_probs=14.5
Q ss_pred eeeeCCCCCCcceeeee
Q 038159 83 ALRVGPESNSEIIGNAQ 99 (188)
Q Consensus 83 ~lt~Gp~~~Sk~VGRaq 99 (188)
+|+.+|+.+|+++.++.
T Consensus 6 ~lr~~P~~~~~vv~~l~ 22 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARLE 22 (55)
T ss_pred EEEcCCCCCCCEEEEEC
Confidence 68899999999998873
No 9
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=20.57 E-value=89 Score=19.52 Aligned_cols=16 Identities=44% Similarity=0.829 Sum_probs=13.1
Q ss_pred eeeeCCCCCCcceeee
Q 038159 83 ALRVGPESNSEIIGNA 98 (188)
Q Consensus 83 ~lt~Gp~~~Sk~VGRa 98 (188)
.|+.+|+.+|+.++.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 4778899989888876
No 10
>PF06597 Clostridium_P47: Clostridium P-47 protein; InterPro: IPR010567 This family consists of several P-47 proteins from various Clostridium species [] as well as related sequences from other bacteria. The function of this family is unknown.
Probab=12.95 E-value=7.3e+02 Score=23.32 Aligned_cols=53 Identities=23% Similarity=0.428 Sum_probs=32.8
Q ss_pred CCceEEEEcccCCCCCceeeEEE-ccccceecee-----EEEE-EEEEEecCCCCceEEEEEEEEE
Q 038159 128 NGSSFSVFSRNQVSEPSRELAVV-GGRGKFRMAR-----GFAE-LKTAYFNGTNGDAIIEFNVSLF 186 (188)
Q Consensus 128 ~GSTL~v~G~~~~~~~~~E~~VV-GGTG~Fr~Ar-----Gya~-~~t~~~~~~~~~~v~e~~v~v~ 186 (188)
.|+..++.|.. .+|.|+ ||.|++-.-+ |+.. .+....+......++|+++..+
T Consensus 33 ~~~~~~i~G~F------~~WqI~~GGdG~~irl~~PI~~g~~~~~~~~~~~~~g~~~~ieV~L~~~ 92 (456)
T PF06597_consen 33 DGSGYSISGNF------GSWQITTGGDGQNIRLKIPIKSGTFDNFKGTTYDVSGVNPIIEVKLDYF 92 (456)
T ss_pred cCCceEEEEEe------cceEEeeCCCCceEEEEEEEeeeEEEeccCcEEEecCCcEEEEEEEeec
Confidence 46667888887 568877 9999876543 4444 3333333344566777776544
Done!