Query 038159
Match_columns 188
No_of_seqs 116 out of 553
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.6 9.1E-07 3.1E-11 71.2 14.4 103 71-186 42-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.4 7.5E-06 2.6E-10 66.1 13.6 127 34-170 13-144 (195)
3 2q03_A Uncharacterized protein 56.9 61 0.0021 24.5 12.0 88 92-184 45-136 (138)
4 2ooj_A Hypothetical protein; s 34.6 1.5E+02 0.005 22.4 13.2 88 92-185 41-133 (141)
5 2krs_A Probable enterotoxin; a 15.9 77 0.0026 20.6 2.0 16 83-98 12-27 (74)
6 2kt8_A Probable surface protei 11.5 1E+02 0.0035 20.2 1.6 16 83-98 14-29 (76)
7 2kq8_A Cell WALL hydrolase; GF 11.5 60 0.0021 20.9 0.4 16 83-98 13-28 (70)
8 1dbg_A Chondroitinase B; beta 9.0 70 0.0024 29.1 0.0 17 1-17 1-17 (506)
9 2e56_A Lymphocyte antigen 96; 8.6 6.7E+02 0.023 19.0 6.5 34 155-188 107-140 (144)
10 2xdp_A Lysine-specific demethy 6.9 5.3E+02 0.018 18.9 4.0 56 71-148 64-119 (123)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.65 E-value=9.1e-07 Score=71.18 Aligned_cols=103 Identities=21% Similarity=0.241 Sum_probs=80.1
Q ss_pred CCCCeeEEEEeeeeeeCCCCCCcceeeeeEEEEEecC---CCCceeEEEEEEEEEccCccCCceEEEEcccCCCCCceee
Q 038159 71 PTPFGSVFAVDDALRVGPESNSEIIGNAQGLYVSSSQ---DANNFAIVMYIDFALTSGEFNGSSFSVFSRNQVSEPSREL 147 (188)
Q Consensus 71 ~~~FG~~~v~Dd~lt~Gp~~~Sk~VGRaqG~~~~~s~---~~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~~E~ 147 (188)
....|+.+.|+++|.+|.. -+.||.-+|+-+.... ..+ ..+-..+++.|-+. | .|+++|..... +...+
T Consensus 42 ~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~g-dryE~tyS~yfgd~---G-hISvQGpy~t~-~Dt~L 113 (188)
T 2brj_A 42 MFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKG-ERFEATYSFYFGDY---G-HLSVQGPYLTY-EDSFL 113 (188)
T ss_dssp SSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTE-EEEEEEEEEECGGG---E-EEEEEEEEETT-BCEEE
T ss_pred CcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCC-cEEEEEEEEEeCCC---c-eEEEecccccc-cccee
Confidence 3458999999999997764 5899999999777642 213 56777778888542 3 79999996433 45789
Q ss_pred EEEccccceeceeEEEEEEEEEecCCCCceEEEEEEEEE
Q 038159 148 AVVGGRGKFRMARGFAELKTAYFNGTNGDAIIEFNVSLF 186 (188)
Q Consensus 148 ~VVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~e~~v~v~ 186 (188)
+|.||||.|+.|+|.+++..+.+ +. -++|.+||.
T Consensus 114 AITGGTGif~gA~G~Vkl~~i~~-P~----k~~yTf~L~ 147 (188)
T 2brj_A 114 AITGGAGIFEGAYGQVKLQQLVY-PT----KLFYTFYLK 147 (188)
T ss_dssp EEEEEEETTTTCEEEEEEEEEET-TT----EEEEEEEEE
T ss_pred eEecCcceEcceEEEEEEEeecc-Cc----eEEEEEEEe
Confidence 99999999999999999999875 32 377887774
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.40 E-value=7.5e-06 Score=66.13 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=83.9
Q ss_pred CCCceeEEEEE-eeeecCCCCcceEEEeccCCcCCCCCCCCCeeEEEEeeeeeeCCCCCCcceeeeeEEEEEec----CC
Q 038159 34 MQQKVTKLHFF-LHDILSGPNPSAVMVAHANLTDGDKSPTPFGSVFAVDDALRVGPESNSEIIGNAQGLYVSSS----QD 108 (188)
Q Consensus 34 ~~~k~t~l~fY-~Hd~~~g~n~t~~~v~~~~~~~~~~~~~~FG~~~v~Dd~lt~Gp~~~Sk~VGRaqG~~~~~s----~~ 108 (188)
.+.|...|+.| +.|.-.+. |.-.++..-........-...|+++.|+++|.+|.. -+-||...|+-+... ..
T Consensus 13 ~p~~vqel~VyEiNE~dr~s-Pa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~ 89 (195)
T 4h6b_A 13 SPGHVQELFVYEINERDRGS-PVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKN 89 (195)
T ss_dssp ---CCEEEEEEEECCSCSCC-CCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTT
T ss_pred CCceeEEEEEEEecccccCC-cceeecccccCccccccccccccccccccccccccc--cccccccccEEEEEeecCCCC
Confidence 34566778888 44443321 222222211100001113469999999999999987 688999999976653 22
Q ss_pred CCceeEEEEEEEEEccCccCCceEEEEcccCCCCCceeeEEEccccceeceeEEEEEEEEEe
Q 038159 109 ANNFAIVMYIDFALTSGEFNGSSFSVFSRNQVSEPSRELAVVGGRGKFRMARGFAELKTAYF 170 (188)
Q Consensus 109 ~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~~E~~VVGGTG~Fr~ArGya~~~t~~~ 170 (188)
+ ..+--.+++.|.+ .| +|+++|..-.. ...-++|+||||.|+.|+|-+++..+-+
T Consensus 90 -G-dryEci~Tf~fGD---~G-hIsvqGpy~t~-eDs~lAITGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 90 -G-DRYEALYSFYFGD---YG-HISVQGPYITY-EDSYLAITGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp -E-EEEEEEEEEECGG---GC-EEEEEEEEETT-BCEEEEEEEESGGGTTCEEEEEEEEEET
T ss_pred -C-ceEEEEEEEEecC---Cc-eEEEecceecc-CceeEEEecCcceEcccEEEEEEeEeee
Confidence 2 4455667777855 35 69999998543 3567999999999999999999988764
No 3
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=56.92 E-value=61 Score=24.48 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=52.7
Q ss_pred CcceeeeeEEEEEecCCCCceeEEEEEEEEE-ccCccCCc-eEEEEcccCCCCCceeeEEEc--cccceeceeEEEEEEE
Q 038159 92 SEIIGNAQGLYVSSSQDANNFAIVMYIDFAL-TSGEFNGS-SFSVFSRNQVSEPSRELAVVG--GRGKFRMARGFAELKT 167 (188)
Q Consensus 92 Sk~VGRaqG~~~~~s~~~~~~~~~~~~~~vF-~~g~~~GS-TL~v~G~~~~~~~~~E~~VVG--GTG~Fr~ArGya~~~t 167 (188)
-.+.|+.++-++.+-.+.+ .+-++.+..+= +-...+|| .|+-.|..........|-||= |||++...+|-..++.
T Consensus 45 G~leGts~~~~L~~~~~~G-~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~ 123 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNA-NATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVS 123 (138)
T ss_dssp SSEEEEEEEEEEEEEEETT-EEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCC-cEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 3477888888877665423 44444443211 11223453 345555554444557899998 9999999999999863
Q ss_pred EEecCCCCceEEEEEEE
Q 038159 168 AYFNGTNGDAIIEFNVS 184 (188)
Q Consensus 168 ~~~~~~~~~~v~e~~v~ 184 (188)
. + .+..-++|+..
T Consensus 124 ~--~--~G~h~Y~~~y~ 136 (138)
T 2q03_A 124 T--E--NGQANYQITLQ 136 (138)
T ss_dssp C--S--TTEEEEEEEEE
T ss_pred e--c--CCceEEEEEEe
Confidence 2 1 24455666654
No 4
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=34.55 E-value=1.5e+02 Score=22.37 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=52.1
Q ss_pred CcceeeeeEEEEEecCC-CCceeEEEEEEEEE-ccCccCCc-eEEEEcccCCCCCceeeEEEc--cccceeceeEEEEEE
Q 038159 92 SEIIGNAQGLYVSSSQD-ANNFAIVMYIDFAL-TSGEFNGS-SFSVFSRNQVSEPSRELAVVG--GRGKFRMARGFAELK 166 (188)
Q Consensus 92 Sk~VGRaqG~~~~~s~~-~~~~~~~~~~~~vF-~~g~~~GS-TL~v~G~~~~~~~~~E~~VVG--GTG~Fr~ArGya~~~ 166 (188)
-.+.|+.++-++.+-.+ .+ .+-++.+-.+= +-...+|| .|+-.|..........+-||= |||++...+|-..++
T Consensus 41 G~leGts~~~~L~~~~~~~G-~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~~ 119 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKG-SAGYVAIEQVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAIS 119 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTT-CEEEEEEEEEEEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCC-cEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEE
Confidence 44677888888776664 12 33444433211 11223453 355556665555568999998 999999999999986
Q ss_pred EEEecCCCCceEEEEEEEE
Q 038159 167 TAYFNGTNGDAIIEFNVSL 185 (188)
Q Consensus 167 t~~~~~~~~~~v~e~~v~v 185 (188)
.. + +..-++||..+
T Consensus 120 ~~--~---G~h~y~ldy~l 133 (141)
T 2ooj_A 120 IE--N---GQHFYEFSFCF 133 (141)
T ss_dssp EE--T---TEEEEEEEEEE
T ss_pred Ec--C---CeEEEEEEEEc
Confidence 42 2 33445555543
No 5
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=15.88 E-value=77 Score=20.63 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=13.7
Q ss_pred eeeeCCCCCCcceeee
Q 038159 83 ALRVGPESNSEIIGNA 98 (188)
Q Consensus 83 ~lt~Gp~~~Sk~VGRa 98 (188)
.|+.+|+.++++++.+
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6889999999888875
No 6
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=11.54 E-value=1e+02 Score=20.20 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=13.0
Q ss_pred eeeeCCCCCCcceeee
Q 038159 83 ALRVGPESNSEIIGNA 98 (188)
Q Consensus 83 ~lt~Gp~~~Sk~VGRa 98 (188)
.|+.||+.+++++|.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 6888999888888764
No 7
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=11.49 E-value=60 Score=20.89 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=13.5
Q ss_pred eeeeCCCCCCcceeee
Q 038159 83 ALRVGPESNSEIIGNA 98 (188)
Q Consensus 83 ~lt~Gp~~~Sk~VGRa 98 (188)
.|+.||+.+++++|++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5788999999999875
No 8
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*
Probab=9.04 E-value=70 Score=29.08 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCcceeehhhHHHHHHH
Q 038159 1 MRSMVNFCLAMILCVAA 17 (188)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (188)
|+++..+.+++|||++.
T Consensus 1 M~~~~~~~~~lll~~~~ 17 (506)
T 1dbg_A 1 MKMLNKLAGYLLPIMVL 17 (506)
T ss_dssp -----------------
T ss_pred CchHHHHHHHHHHHHHh
Confidence 77777666666666644
No 9
>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C*
Probab=8.58 E-value=6.7e+02 Score=19.00 Aligned_cols=34 Identities=9% Similarity=0.267 Sum_probs=22.9
Q ss_pred ceeceeEEEEEEEEEecCCCCceEEEEEEEEEeC
Q 038159 155 KFRMARGFAELKTAYFNGTNGDAIIEFNVSLFHY 188 (188)
Q Consensus 155 ~Fr~ArGya~~~t~~~~~~~~~~v~e~~v~v~hy 188 (188)
.+++-+|....-.--.+...+..+.=+|.++.||
T Consensus 107 g~~fpkG~Y~~~~ea~~~~~e~~l~ClNfTii~~ 140 (144)
T 2e56_A 107 GIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQ 140 (144)
T ss_dssp CCTTCCSEEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred cEecCCCcEEEEEEEecCCchheEEEeeEEEEEc
Confidence 4777888433323333445567899999999997
No 10
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=6.88 E-value=5.3e+02 Score=18.90 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCCCeeEEEEeeeeeeCCCCCCcceeeeeEEEEEecCCCCceeEEEEEEEEEccCccCCceEEEEcccCCCCCceeeE
Q 038159 71 PTPFGSVFAVDDALRVGPESNSEIIGNAQGLYVSSSQDANNFAIVMYIDFALTSGEFNGSSFSVFSRNQVSEPSRELA 148 (188)
Q Consensus 71 ~~~FG~~~v~Dd~lt~Gp~~~Sk~VGRaqG~~~~~s~~~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~~E~~ 148 (188)
+..-|..+-+.|+ +|.-.+++.+|+ .....+++.|++| | ....-|..+-....|+|
T Consensus 64 pP~~G~~V~V~W~--DG~~y~a~f~g~---------------~~~~~YtV~FeDg----s-~~~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 64 PPAEGEVVQVKWP--DGKLYGAKYFGS---------------NIAHMYQVEFEDG----S-QIAMKREDIYTLDEELP 119 (123)
T ss_dssp CCCTTCEEEEECT--TSCEEEEEEEEE---------------EEEEEEEEECTTS----C-EEEEEGGGCCCSSSCCC
T ss_pred CCCCCCEEEEEcC--CCCEEeEEEeee---------------eeEEEEEEEECCC----C-eEEecHHHccccccccc
Confidence 4456888888884 666554444443 2346778999875 4 44456666555444544
Done!