BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038160
         (270 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4E6I|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
           Nviaga V99g At Cryogenic Temperature
 pdb|4E6I|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
           Nviaga V99g At Cryogenic Temperature
          Length = 149

 Score = 31.2 bits (69), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 43  YCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCD 102
           Y   L YI++   +GN           L  QGL K+  +Y G +T E    +  +  + +
Sbjct: 85  YGRGLAYIYADGKMGN---------EALVRQGLAKVAYVYKGNNTHEQHLRKAEAQAKKE 135

Query: 103 KLKIFTEDLSQNNE 116
           KL I++ED + + +
Sbjct: 136 KLNIWSEDNADSGQ 149


>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           And Immunoglobulin Domain Of Netrin-G Ligand-3
          Length = 411

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 24  QIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81
            IP+  F    SL RL +    +L+YI  A+  G L  L++L L    L+ +P L  L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG-LVNLRYLNLGMCNLKDIPNLTAL 177


>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           Of Netrin-G Ligand-3
 pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           Of Netrin-G Ligand-3
          Length = 321

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 24  QIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81
            IP+  F    SL RL +    +L+YI  A+  G L  L++L L    L+ +P L  L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG-LVNLRYLNLGMCNLKDIPNLTAL 177


>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
          Length = 452

 Score = 27.3 bits (59), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 24  QIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83
            IP+  F    SL RL +    KL+YI   +  G L  L++L L    ++ +P L  L  
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKDMPNLTPLVG 219

Query: 84  ----GMHTSEWPALEILSVHRCDKLK 105
                M  + +P +   S H    LK
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLK 245


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,185,500
Number of Sequences: 62578
Number of extensions: 260374
Number of successful extensions: 542
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 4
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)