Query 038160
Match_columns 270
No_of_seqs 117 out of 1341
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:12:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.7 7E-16 1.5E-20 154.1 16.3 239 3-269 610-906 (1153)
2 PLN03210 Resistant to P. syrin 99.5 6.5E-13 1.4E-17 133.0 14.3 95 172-270 777-883 (1153)
3 PLN00113 leucine-rich repeat r 99.2 2E-10 4.3E-15 113.9 11.4 84 172-266 283-366 (968)
4 PLN00113 leucine-rich repeat r 99.1 2.9E-10 6.3E-15 112.7 11.0 108 144-266 283-390 (968)
5 KOG4341 F-box protein containi 98.8 2E-11 4.2E-16 105.4 -8.7 250 5-270 139-415 (483)
6 KOG4341 F-box protein containi 98.7 5.1E-11 1.1E-15 102.9 -9.2 245 2-269 162-439 (483)
7 KOG4194 Membrane glycoprotein 98.7 1.1E-08 2.3E-13 92.3 2.7 91 144-241 316-408 (873)
8 KOG4658 Apoptotic ATPase [Sign 98.3 9.2E-07 2E-11 86.0 6.5 56 3-66 544-601 (889)
9 PRK15370 E3 ubiquitin-protein 98.2 4E-06 8.7E-11 80.4 8.0 53 173-234 325-377 (754)
10 cd00116 LRR_RI Leucine-rich re 98.1 2.6E-07 5.5E-12 80.0 -1.7 88 144-234 164-260 (319)
11 KOG4194 Membrane glycoprotein 98.0 6.8E-07 1.5E-11 80.9 -0.9 70 4-81 173-250 (873)
12 PRK15370 E3 ubiquitin-protein 98.0 1.5E-05 3.2E-10 76.5 6.4 80 144-240 324-403 (754)
13 KOG2120 SCF ubiquitin ligase, 97.9 8.8E-08 1.9E-12 80.0 -7.6 89 144-234 285-373 (419)
14 PRK15387 E3 ubiquitin-protein 97.9 0.00011 2.4E-09 70.7 11.3 75 146-240 343-417 (788)
15 KOG2120 SCF ubiquitin ligase, 97.8 5.8E-07 1.3E-11 75.2 -4.4 63 143-208 311-373 (419)
16 KOG3207 Beta-tubulin folding c 97.8 1.6E-06 3.5E-11 75.9 -2.8 64 171-235 244-312 (505)
17 KOG1947 Leucine rich repeat pr 97.8 8E-07 1.7E-11 81.1 -5.1 15 144-158 294-308 (482)
18 PF13855 LRR_8: Leucine rich r 97.8 5.6E-05 1.2E-09 48.7 4.7 54 4-65 1-54 (61)
19 KOG4658 Apoptotic ATPase [Sign 97.7 1.4E-05 3E-10 78.0 2.3 187 2-216 569-788 (889)
20 PRK15387 E3 ubiquitin-protein 97.7 0.00021 4.6E-09 68.7 10.0 55 173-235 402-456 (788)
21 PF13855 LRR_8: Leucine rich r 97.7 3E-05 6.5E-10 50.0 3.0 58 174-234 2-59 (61)
22 KOG3207 Beta-tubulin folding c 97.7 9.8E-06 2.1E-10 71.1 -0.1 86 144-233 245-335 (505)
23 PRK15386 type III secretion pr 97.7 0.00026 5.6E-09 62.9 8.7 62 32-108 50-111 (426)
24 KOG0444 Cytoskeletal regulator 97.6 1.7E-06 3.7E-11 79.1 -5.9 55 3-66 102-156 (1255)
25 KOG0618 Serine/threonine phosp 97.6 4.5E-06 9.8E-11 79.2 -3.6 43 32-77 285-327 (1081)
26 PRK15386 type III secretion pr 97.5 0.00025 5.5E-09 63.0 6.9 132 68-266 55-187 (426)
27 cd00116 LRR_RI Leucine-rich re 97.5 1.3E-05 2.8E-10 69.3 -1.5 214 3-235 50-289 (319)
28 KOG0444 Cytoskeletal regulator 97.4 1.4E-05 3.1E-10 73.4 -2.0 203 3-240 54-260 (1255)
29 KOG1947 Leucine rich repeat pr 97.4 1.7E-05 3.6E-10 72.5 -2.7 94 144-237 213-308 (482)
30 KOG0617 Ras suppressor protein 97.2 2.8E-05 6E-10 60.4 -2.9 153 32-234 31-183 (264)
31 KOG0472 Leucine-rich repeat pr 97.0 0.00026 5.6E-09 62.0 1.0 54 2-66 250-303 (565)
32 PF14580 LRR_9: Leucine-rich r 96.8 0.0013 2.8E-08 52.0 3.3 51 5-66 20-70 (175)
33 KOG3665 ZYG-1-like serine/thre 96.7 0.00045 9.8E-09 65.9 0.5 86 3-103 147-232 (699)
34 KOG3665 ZYG-1-like serine/thre 96.6 0.00038 8.3E-09 66.4 -0.8 113 143-264 146-258 (699)
35 PF14580 LRR_9: Leucine-rich r 96.6 0.0019 4.2E-08 51.0 3.0 84 144-235 41-124 (175)
36 PF12799 LRR_4: Leucine Rich r 96.6 0.0024 5.3E-08 38.1 2.7 39 4-50 1-39 (44)
37 KOG0617 Ras suppressor protein 96.1 0.00026 5.6E-09 55.1 -4.0 90 2-108 100-189 (264)
38 KOG3864 Uncharacterized conser 95.8 0.00087 1.9E-08 53.4 -2.6 67 171-238 123-190 (221)
39 KOG4237 Extracellular matrix p 95.7 0.0008 1.7E-08 58.8 -3.3 57 3-66 90-146 (498)
40 KOG0472 Leucine-rich repeat pr 95.5 0.00022 4.7E-09 62.4 -7.4 57 144-208 251-307 (565)
41 KOG3864 Uncharacterized conser 95.1 0.0022 4.8E-08 51.2 -2.4 69 144-214 124-192 (221)
42 KOG4237 Extracellular matrix p 94.9 0.0029 6.4E-08 55.4 -2.2 53 5-65 68-120 (498)
43 KOG0618 Serine/threonine phosp 94.9 0.0062 1.3E-07 58.7 -0.4 91 2-103 381-488 (1081)
44 PF12799 LRR_4: Leucine Rich r 94.4 0.036 7.8E-07 33.0 2.3 14 221-234 21-34 (44)
45 KOG2982 Uncharacterized conser 94.1 0.072 1.6E-06 45.4 4.1 60 4-74 71-130 (418)
46 PLN03150 hypothetical protein; 93.9 0.099 2.1E-06 49.9 5.2 88 6-108 420-507 (623)
47 KOG1644 U2-associated snRNP A' 93.6 0.11 2.3E-06 41.8 4.0 12 90-101 139-150 (233)
48 COG4886 Leucine-rich repeat (L 93.3 0.066 1.4E-06 47.9 2.8 12 90-101 185-196 (394)
49 PF13504 LRR_7: Leucine rich r 92.1 0.11 2.4E-06 24.0 1.4 17 91-108 1-17 (17)
50 smart00367 LRR_CC Leucine-rich 91.5 0.085 1.8E-06 27.4 0.7 18 197-214 1-18 (26)
51 KOG2739 Leucine-rich acidic nu 90.8 0.16 3.5E-06 42.2 2.1 62 172-235 90-154 (260)
52 KOG2982 Uncharacterized conser 90.7 0.048 1E-06 46.4 -1.1 70 170-240 196-265 (418)
53 PLN03150 hypothetical protein; 90.7 0.33 7.2E-06 46.3 4.4 64 36-108 420-483 (623)
54 COG4886 Leucine-rich repeat (L 90.5 0.15 3.2E-06 45.6 1.8 29 35-66 141-169 (394)
55 KOG0532 Leucine-rich repeat (L 90.3 0.015 3.4E-07 53.3 -4.6 65 32-109 96-160 (722)
56 KOG1909 Ran GTPase-activating 90.2 0.0085 1.9E-07 51.6 -5.9 87 144-235 212-309 (382)
57 KOG1259 Nischarin, modulator o 90.2 0.081 1.7E-06 45.1 -0.2 20 25-45 206-225 (490)
58 PF00560 LRR_1: Leucine Rich R 87.2 0.37 8E-06 23.8 1.1 12 36-48 2-13 (22)
59 KOG2123 Uncharacterized conser 86.8 0.017 3.6E-07 48.6 -6.2 104 144-263 18-124 (388)
60 KOG1259 Nischarin, modulator o 86.5 0.099 2.1E-06 44.6 -1.9 34 3-44 306-339 (490)
61 KOG1859 Leucine-rich repeat pr 82.9 0.13 2.7E-06 49.0 -3.1 19 26-45 102-120 (1096)
62 KOG0531 Protein phosphatase 1, 80.1 0.9 1.9E-05 41.0 1.4 54 2-66 93-146 (414)
63 KOG2739 Leucine-rich acidic nu 79.4 0.91 2E-05 37.9 1.1 12 32-43 63-74 (260)
64 smart00370 LRR Leucine-rich re 77.9 1.4 2.9E-05 22.5 1.1 16 3-18 1-16 (26)
65 smart00369 LRR_TYP Leucine-ric 77.9 1.4 2.9E-05 22.5 1.1 16 3-18 1-16 (26)
66 PF07725 LRR_3: Leucine Rich R 77.7 1.1 2.3E-05 21.8 0.6 18 5-22 1-18 (20)
67 PF13306 LRR_5: Leucine rich r 76.9 11 0.00023 27.3 6.2 55 172-231 34-88 (129)
68 KOG0532 Leucine-rich repeat (L 75.9 1.1 2.4E-05 41.6 0.7 84 6-102 145-245 (722)
69 KOG2123 Uncharacterized conser 73.0 0.25 5.5E-06 41.8 -3.8 69 4-84 19-96 (388)
70 KOG1644 U2-associated snRNP A' 72.2 4.7 0.0001 32.7 3.3 85 144-234 63-150 (233)
71 PF13306 LRR_5: Leucine rich r 69.9 5 0.00011 29.1 2.9 53 3-65 11-63 (129)
72 smart00365 LRR_SD22 Leucine-ri 66.2 4.8 0.0001 20.9 1.5 17 3-19 1-17 (26)
73 KOG1859 Leucine-rich repeat pr 61.9 0.59 1.3E-05 44.8 -4.1 15 4-18 209-223 (1096)
74 KOG0531 Protein phosphatase 1, 50.8 5.8 0.00013 35.8 0.3 54 2-67 116-169 (414)
75 PF13516 LRR_6: Leucine Rich r 50.3 11 0.00025 18.5 1.3 13 90-102 1-13 (24)
76 KOG3763 mRNA export factor TAP 45.2 6.8 0.00015 36.4 -0.1 87 2-97 216-307 (585)
77 KOG4579 Leucine-rich repeat (L 34.0 3.6 7.9E-05 31.3 -3.0 56 175-234 55-110 (177)
78 smart00368 LRR_RI Leucine rich 32.3 26 0.00057 18.2 1.0 14 4-17 2-15 (28)
79 KOG1909 Ran GTPase-activating 28.0 17 0.00037 31.9 -0.3 94 3-102 184-281 (382)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=7e-16 Score=154.14 Aligned_cols=239 Identities=21% Similarity=0.229 Sum_probs=119.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE----------------
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE---------------- 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~---------------- 66 (270)
+.+|++|++.+++++.+|.+ + . .+++|++|++++|..++.++. ++.+++|++|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~--~----~-~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDG--V----H-SLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred ccCCcEEECcCccccccccc--c----c-cCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhc
Confidence 45777777777767776654 1 1 455555555555554444422 33444444443
Q ss_pred ---eeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccccccccCCCCC------CCC---CCCCCCCccc
Q 038160 67 ---LTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLG------IPA---QQPPLPLEKE 134 (270)
Q Consensus 67 ---L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~------~~~---~~~l~~~~~~ 134 (270)
|+.|++++|.+++.++.. ..+++|+.|++++|..++.+|... .+++.++.. +|. +..+..+...
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~p~~~-~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKSFPDIS-TNISWLDLDETAIEEFPSNLRLENLDELILC 755 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCcccccccc-CCcCeeecCCCcccccccccccccccccccc
Confidence 233466677777666543 256777888888887776665321 122222211 110 0000000000
Q ss_pred ccc-----ccC-------cCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcE
Q 038160 135 GCL-----EKH-------LGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAK 202 (270)
Q Consensus 135 ~c~-----e~~-------~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~ 202 (270)
.|. +.. ....++|+.|++++|+.+..+.. ....+++|+.|++++|..++.++.. ..+++|++
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~----si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~ 829 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS----SIQNLHKLEHLEIENCINLETLPTG--INLESLES 829 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccccCh----hhhCCCCCCEEECCCCCCcCeeCCC--CCccccCE
Confidence 000 000 00134555566665555444321 1234556666666666655554322 24556666
Q ss_pred EEeeCCcCCcccC------------------ChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecC
Q 038160 203 LVAFGCKELIHLV------------------TSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLF 264 (270)
Q Consensus 203 L~i~~c~~l~~l~------------------~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 264 (270)
|++++|.+++.+. .+.....+++|+.|++.+|++++.+.. ....+++|+.+.+.
T Consensus 830 L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--------~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 830 LDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--------NISKLKHLETVDFS 901 (1153)
T ss_pred EECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc--------ccccccCCCeeecC
Confidence 6666665544321 112345567777777777777766532 11245667777777
Q ss_pred CCCCC
Q 038160 265 DLDSL 269 (270)
Q Consensus 265 ~~~~L 269 (270)
+|++|
T Consensus 902 ~C~~L 906 (1153)
T PLN03210 902 DCGAL 906 (1153)
T ss_pred CCccc
Confidence 77665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=6.5e-13 Score=133.01 Aligned_cols=95 Identities=22% Similarity=0.177 Sum_probs=70.1
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCC-----
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKD----- 246 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~----- 246 (270)
.++|++|++++|+.+..++.. ...+++|+.|++.+|.+++.+... .++++|+.|++++|..+..+......
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred cccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccccccccCEeE
Confidence 468999999999888776444 778999999999999999876432 26889999999999887654311100
Q ss_pred -------CCccceeecCccCeeecCCCCCCC
Q 038160 247 -------GVEKEEIVFCKLKTLQLFDLDSLT 270 (270)
Q Consensus 247 -------~~~~~~~~~~~L~~L~l~~~~~L~ 270 (270)
..+.....+++|+.|.+.+|++|+
T Consensus 853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CCCCCCccChHHHhcCCCCCEEECCCCCCcC
Confidence 001112258899999999998874
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.16 E-value=2e-10 Score=113.94 Aligned_cols=84 Identities=20% Similarity=0.146 Sum_probs=42.1
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccc
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKE 251 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 251 (270)
+++|++|++++|..... .|.....+++|++|++.++.-... .+.....+++|+.|++++|.-..++ +..
T Consensus 283 l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~--------p~~ 351 (968)
T PLN00113 283 LQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGK--IPVALTSLPRLQVLQLWSNKFSGEI--------PKN 351 (968)
T ss_pred ccCcCEEECcCCeeccC-CChhHcCCCCCcEEECCCCccCCc--CChhHhcCCCCCEEECcCCCCcCcC--------ChH
Confidence 55666666665542222 233244556666666665533221 1223455666666666666421111 111
Q ss_pred eeecCccCeeecCCC
Q 038160 252 EIVFCKLKTLQLFDL 266 (270)
Q Consensus 252 ~~~~~~L~~L~l~~~ 266 (270)
...+++|+.|++.++
T Consensus 352 l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 352 LGKHNNLTVLDLSTN 366 (968)
T ss_pred HhCCCCCcEEECCCC
Confidence 124567777777654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.13 E-value=2.9e-10 Score=112.73 Aligned_cols=108 Identities=19% Similarity=0.106 Sum_probs=69.1
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|++++|. +..... .....+++|++|+++++...... +.....+++|+.|++.+|.-... .+.....+
T Consensus 283 l~~L~~L~Ls~n~-l~~~~p---~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~~ 355 (968)
T PLN00113 283 LQKLISLDLSDNS-LSGEIP---ELVIQLQNLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGE--IPKNLGKH 355 (968)
T ss_pred ccCcCEEECcCCe-eccCCC---hhHcCCCCCcEEECCCCccCCcC-ChhHhcCCCCCEEECcCCCCcCc--CChHHhCC
Confidence 6788888888773 221111 12335789999999987644433 44466789999999998864322 23456778
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
++|+.|+++++. +.... +.....+++|+.|.+.++
T Consensus 356 ~~L~~L~Ls~n~-l~~~~-------p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 356 NNLTVLDLSTNN-LTGEI-------PEGLCSSGNLFKLILFSN 390 (968)
T ss_pred CCCcEEECCCCe-eEeeC-------ChhHhCcCCCCEEECcCC
Confidence 999999999984 22211 111123567888777653
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=2e-11 Score=105.42 Aligned_cols=250 Identities=16% Similarity=0.144 Sum_probs=144.4
Q ss_pred CccEEEEec-cccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 5 NLEALEISA-INVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 5 ~L~~L~l~~-~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
.||+|.++| -.+..-- .-... +.+||+++|.+++|+++++....+....++.|+++ .+..|++++....
T Consensus 139 ~lk~LSlrG~r~v~~ss----lrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l-----~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSS----LRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHL-----NLHSCSSITDVSL 208 (483)
T ss_pred ccccccccccccCCcch----hhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhh-----hhcccchhHHHHH
Confidence 477888887 4443310 10111 27899999999999988876556667788888777 6778999988777
Q ss_pred CccccCCCcccEEEeccCCCceeec-----ccccccccCCCC-CCCC--CC----------CCCCCcccccc----ccCc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFT-----EDLSQNNENDQL-GIPA--QQ----------PPLPLEKEGCL----EKHL 141 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~-----~~~~~~~~~~~~-~~~~--~~----------~l~~~~~~~c~----e~~~ 141 (270)
+.....||+|++|+++.|+.++.-. .+ ...+..... .+.. .+ .+...+--+|. ++..
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG-~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRG-CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhcc-chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence 6666679999999999999876411 00 000000000 0000 00 00000000110 0000
Q ss_pred ---CCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC-CCcccCcCCcEEEeeCCcCCcccCCh
Q 038160 142 ---GKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP-SSSVSFRNLAKLVAFGCKELIHLVTS 217 (270)
Q Consensus 142 ---~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~ 217 (270)
--+..|+.|..++|..+.+.... ..+...++|+.+.+..|..+.+... ....+++.|+.+++.+|....+....
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~--aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLW--ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHH--HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence 00445566666666554432110 1123357888888888877765442 23456788888888888776665334
Q ss_pred hHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCCCCC
Q 038160 218 STAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLDSLT 270 (270)
Q Consensus 218 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 270 (270)
+.+.+++.|+.+.++.|..+.+-.+.-.+... =....|..+.+.+||..+
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~---c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSS---CSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhcc---ccccccceeeecCCCCch
Confidence 45677888888888888765544211100000 034568888888888653
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.74 E-value=5.1e-11 Score=102.88 Aligned_cols=245 Identities=17% Similarity=0.147 Sum_probs=150.7
Q ss_pred CCCCccEEEEec-ccccee-cccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcc
Q 038160 2 ALPNLEALEISA-INVDKI-WHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLR 79 (270)
Q Consensus 2 ~~~~L~~L~l~~-~~l~~~-~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~ 79 (270)
+.|+.++|.+.+ .+++.. ... +. . .+++|++|.+..|.+++..........+++|++| +++.|+.++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~s--la-~---~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~l-----NlSwc~qi~ 230 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLS--LA-R---YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYL-----NLSWCPQIS 230 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHH--HH-H---hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHh-----hhccCchhh
Confidence 578999999998 777652 211 11 1 6899999999999999887655567788998887 677888877
Q ss_pred eecCCccccCCCcccEEEeccCCCcee--ecc--cccccccCCC--C-----C---------CCCCCCCCCCccccc---
Q 038160 80 CLYPGMHTSEWPALEILSVHRCDKLKI--FTE--DLSQNNENDQ--L-----G---------IPAQQPPLPLEKEGC--- 136 (270)
Q Consensus 80 ~~~~~~~~~~~~~L~~L~i~~c~~l~~--~~~--~~~~~~~~~~--~-----~---------~~~~~~l~~~~~~~c--- 136 (270)
+-........+..++++..++|..+.. +.. ...+.+..+. . + ...++.+ ..-.|
T Consensus 231 ~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l---~~s~~t~~ 307 (483)
T KOG4341|consen 231 GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL---CYSSCTDI 307 (483)
T ss_pred cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh---cccCCCCC
Confidence 632222223355566666667765431 100 0000000000 0 0 0001111 11112
Q ss_pred ----cccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhh-cCCCcccCcCCcEEEeeCCcCC
Q 038160 137 ----LEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLIL-LPSSSVSFRNLAKLVAFGCKEL 211 (270)
Q Consensus 137 ----~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~L~~L~i~~c~~l 211 (270)
+..+....++|+.+-+.+|.++..... ...+...++|+.+.+.+|....+- ..+...+++.|+.+.++.|.-+
T Consensus 308 ~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f--t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~i 385 (483)
T KOG4341|consen 308 TDEVLWALGQHCHNLQVLELSGCQQFSDRGF--TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELI 385 (483)
T ss_pred chHHHHHHhcCCCceEEEeccccchhhhhhh--hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhh
Confidence 111223478999999999998665432 123345789999999998765543 2334578999999999999887
Q ss_pred cccCChh---HHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCCCC
Q 038160 212 IHLVTSS---TAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLDSL 269 (270)
Q Consensus 212 ~~l~~~~---~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 269 (270)
++-.... .......|..+.+.+|+.+.+..- ......++|+.+.+.+|.+.
T Consensus 386 tD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-------e~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 386 TDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-------EHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhhhhhhhhhccccccccceeeecCCCCchHHHH-------HHHhhCcccceeeeechhhh
Confidence 7752211 123456788999999997765521 11236789999999888764
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.66 E-value=1.1e-08 Score=92.28 Aligned_cols=91 Identities=23% Similarity=0.229 Sum_probs=48.0
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccC--ChhHHh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLV--TSSTAK 221 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~--~~~~~~ 221 (270)
.++|+.|++++- +++.+-. +....++.|++|.++. +.++++....+..+.+|+.|+++.. .+...+ ....+.
T Consensus 316 tqkL~~LdLs~N-~i~~l~~---~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 316 TQKLKELDLSSN-RITRLDE---GSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFN 389 (873)
T ss_pred cccceeEecccc-ccccCCh---hHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhc
Confidence 667777777665 3443321 1123466777777775 3344444333445666777766642 222111 111234
Q ss_pred hccCCcEEEEecCCCcceEe
Q 038160 222 TLVRLVKVQVYGCRAMTEVV 241 (270)
Q Consensus 222 ~l~~L~~L~i~~c~~l~~~~ 241 (270)
.+++|++|.+.|. +++.|.
T Consensus 390 gl~~LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 390 GLPSLRKLRLTGN-QLKSIP 408 (873)
T ss_pred cchhhhheeecCc-eeeecc
Confidence 4777777777776 355553
No 8
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.32 E-value=9.2e-07 Score=86.04 Aligned_cols=56 Identities=25% Similarity=0.282 Sum_probs=34.1
Q ss_pred CCCccEEEEeccc--cceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAIN--VDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~--l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
.|+|.+|-+.++. +.. ++...+-.+|.|+.|++++|.++.++|.. ++.|.+|++|+
T Consensus 544 ~~~L~tLll~~n~~~l~~------is~~ff~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~ 601 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE------ISGEFFRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLD 601 (889)
T ss_pred CCccceEEEeecchhhhh------cCHHHHhhCcceEEEECCCCCccCcCChH--Hhhhhhhhccc
Confidence 3456666666643 222 22222225777888888877777776444 77777777776
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.21 E-value=4e-06 Score=80.39 Aligned_cols=53 Identities=17% Similarity=0.028 Sum_probs=27.4
Q ss_pred cccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 173 QYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 173 ~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
++|+.|.+++|. ++.++.. ..++|+.|+++++ ++..+ +..+ .++|+.|++++|
T Consensus 325 ~sL~~L~Ls~N~-Lt~LP~~---l~~sL~~L~Ls~N-~L~~L-P~~l---p~~L~~LdLs~N 377 (754)
T PRK15370 325 PGLKTLEAGENA-LTSLPAS---LPPELQVLDVSKN-QITVL-PETL---PPTITTLDVSRN 377 (754)
T ss_pred ccceeccccCCc-cccCChh---hcCcccEEECCCC-CCCcC-Chhh---cCCcCEEECCCC
Confidence 466666666653 3333222 1256777777765 33332 1111 246777777776
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.13 E-value=2.6e-07 Score=79.97 Aligned_cols=88 Identities=17% Similarity=0.080 Sum_probs=42.3
Q ss_pred CCCCCEEEecCccccccccccc-ccccccccccceEEEecCcch----hhhcCCCcccCcCCcEEEeeCCcCCcccCChh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSL----LILLPSSSVSFRNLAKLVAFGCKELIHLVTSS 218 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 218 (270)
+++|++|++.+|. +..-.... .......++|++|++++|.-- ..+. .....+++|++|++++|+ +.+.....
T Consensus 164 ~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~~~~~~~~L~~L~ls~n~-l~~~~~~~ 240 (319)
T cd00116 164 NRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA-ETLASLKSLEVLNLGDNN-LTDAGAAA 240 (319)
T ss_pred CCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH-HHhcccCCCCEEecCCCc-CchHHHHH
Confidence 4567777776652 22100000 000112347777777776421 1111 113346677777777763 44322222
Q ss_pred HHhhc----cCCcEEEEecC
Q 038160 219 TAKTL----VRLVKVQVYGC 234 (270)
Q Consensus 219 ~~~~l----~~L~~L~i~~c 234 (270)
++..+ +.|+.|++++|
T Consensus 241 l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 241 LASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHhccCCCceEEEccCC
Confidence 33332 57777777777
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.04 E-value=6.8e-07 Score=80.94 Aligned_cols=70 Identities=24% Similarity=0.376 Sum_probs=45.0
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEe--------eeEEeccC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLEL--------TTLRLQGL 75 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L--------~~L~L~~~ 75 (270)
+++++|+|.++.++.+-.+ .|.+|.+|-+|.+++. .++-+ |...+..|++|+.|+| +.+.+.++
T Consensus 173 ~ni~~L~La~N~It~l~~~------~F~~lnsL~tlkLsrN-rittL-p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETG------HFDSLNSLLTLKLSRN-RITTL-PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred CCceEEeeccccccccccc------cccccchheeeecccC-ccccc-CHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 4689999999888875332 3336778888888764 45544 4444677888887772 23445555
Q ss_pred CCccee
Q 038160 76 PKLRCL 81 (270)
Q Consensus 76 ~~L~~~ 81 (270)
++++.+
T Consensus 245 ~Sl~nl 250 (873)
T KOG4194|consen 245 PSLQNL 250 (873)
T ss_pred hhhhhh
Confidence 555544
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.95 E-value=1.5e-05 Score=76.53 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=52.1
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
.++|+.|++.+| +++.+.. ...++|+.|++++|. ++.++.. ..++|++|++++| ++..+. ..+.
T Consensus 324 ~~sL~~L~Ls~N-~Lt~LP~------~l~~sL~~L~Ls~N~-L~~LP~~---lp~~L~~LdLs~N-~Lt~LP-~~l~--- 387 (754)
T PRK15370 324 PPGLKTLEAGEN-ALTSLPA------SLPPELQVLDVSKNQ-ITVLPET---LPPTITTLDVSRN-ALTNLP-ENLP--- 387 (754)
T ss_pred cccceeccccCC-ccccCCh------hhcCcccEEECCCCC-CCcCChh---hcCCcCEEECCCC-cCCCCC-HhHH---
Confidence 467888888887 3544321 124789999999974 5544322 2479999999987 465542 2222
Q ss_pred cCCcEEEEecCCCcceE
Q 038160 224 VRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~ 240 (270)
.+|+.|+++++. +..+
T Consensus 388 ~sL~~LdLs~N~-L~~L 403 (754)
T PRK15370 388 AALQIMQASRNN-LVRL 403 (754)
T ss_pred HHHHHHhhccCC-cccC
Confidence 368888888873 4443
No 13
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=8.8e-08 Score=80.03 Aligned_cols=89 Identities=21% Similarity=0.141 Sum_probs=53.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
-++|..|+++||..--..-.- .......|+|.+|++++|..+++-....+..|+-|++|.+++|..+.--. .-.+.+.
T Consensus 285 se~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~-~~~l~s~ 362 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET-LLELNSK 362 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHH-eeeeccC
Confidence 456777888887642111100 01123468888888888877765333335678888888888887642100 0123567
Q ss_pred cCCcEEEEecC
Q 038160 224 VRLVKVQVYGC 234 (270)
Q Consensus 224 ~~L~~L~i~~c 234 (270)
|+|++|++.||
T Consensus 363 psl~yLdv~g~ 373 (419)
T KOG2120|consen 363 PSLVYLDVFGC 373 (419)
T ss_pred cceEEEEeccc
Confidence 88888888887
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.91 E-value=0.00011 Score=70.67 Aligned_cols=75 Identities=27% Similarity=0.289 Sum_probs=38.5
Q ss_pred CCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccC
Q 038160 146 MIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVR 225 (270)
Q Consensus 146 ~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 225 (270)
+|+.|+++++ +++.+.. ..++|+.|+++++ .+..+ |. ..++|+.|+++++ +++.+.. ..++
T Consensus 343 ~Lq~LdLS~N-~Ls~LP~-------lp~~L~~L~Ls~N-~L~~L-P~---l~~~L~~LdLs~N-~Lt~LP~-----l~s~ 403 (788)
T PRK15387 343 GLQELSVSDN-QLASLPT-------LPSELYKLWAYNN-RLTSL-PA---LPSGLKELIVSGN-RLTSLPV-----LPSE 403 (788)
T ss_pred ccceEecCCC-ccCCCCC-------CCcccceehhhcc-ccccC-cc---cccccceEEecCC-cccCCCC-----cccC
Confidence 5666666654 3443211 1245666666553 24333 22 2346777777754 4443321 1246
Q ss_pred CcEEEEecCCCcceE
Q 038160 226 LVKVQVYGCRAMTEV 240 (270)
Q Consensus 226 L~~L~i~~c~~l~~~ 240 (270)
|+.|+++++. +..+
T Consensus 404 L~~LdLS~N~-LssI 417 (788)
T PRK15387 404 LKELMVSGNR-LTSL 417 (788)
T ss_pred CCEEEccCCc-CCCC
Confidence 7778887763 4443
No 15
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=5.8e-07 Score=75.21 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=47.0
Q ss_pred CCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCC
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGC 208 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c 208 (270)
.+|++.+|++++|..++.-.. .+...++.|++|.++.|+.+..--.-....-|+|.+|++.+|
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~---~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCF---QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHH---HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 399999999999988765211 123458999999999999774321112556799999999987
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.6e-06 Score=75.88 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=32.4
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhH-----HhhccCCcEEEEecCC
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSST-----AKTLVRLVKVQVYGCR 235 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~-----~~~l~~L~~L~i~~c~ 235 (270)
.+..|++|+|++...+.--.....+.||.|+.|+++.|. +.++..++. ...+++|++|.|...+
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 355666666666443322111124556666666666552 333322222 3445666666666653
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.79 E-value=8e-07 Score=81.13 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=9.9
Q ss_pred CCCCCEEEecCcccc
Q 038160 144 LAMIKELKLYRPYHL 158 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l 158 (270)
+++|++|++++|.++
T Consensus 294 ~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGL 308 (482)
T ss_pred cCcccEEeeecCccc
Confidence 566667777666665
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.76 E-value=5.6e-05 Score=48.72 Aligned_cols=54 Identities=31% Similarity=0.486 Sum_probs=37.4
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhcccccccee
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL 65 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 65 (270)
|+|++|++++++++.+ |.+.+..+++|++|++.++ .++.+ ++..+.++++|++|
T Consensus 1 p~L~~L~l~~n~l~~i------~~~~f~~l~~L~~L~l~~N-~l~~i-~~~~f~~l~~L~~L 54 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI------PPDSFSNLPNLETLDLSNN-NLTSI-PPDAFSNLPNLRYL 54 (61)
T ss_dssp TTESEEEETSSTESEE------CTTTTTTGTTESEEEETSS-SESEE-ETTTTTTSTTESEE
T ss_pred CcCcEEECCCCCCCcc------CHHHHcCCCCCCEeEccCC-ccCcc-CHHHHcCCCCCCEE
Confidence 6788899988888774 3333337888999998864 56665 33446666666665
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.74 E-value=1.4e-05 Score=77.96 Aligned_cols=187 Identities=24% Similarity=0.268 Sum_probs=96.3
Q ss_pred CCCCccEEEEec-cccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEE--------e
Q 038160 2 ALPNLEALEISA-INVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLR--------L 72 (270)
Q Consensus 2 ~~~~L~~L~l~~-~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~--------L 72 (270)
.+|.|+.|++++ ..+.+ +|..++ .+-+||+|++++. .++++|.. +++|+.|.+|++...+ +
T Consensus 569 ~m~~LrVLDLs~~~~l~~------LP~~I~-~Li~LryL~L~~t-~I~~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSK------LPSSIG-ELVHLRYLDLSDT-GISHLPSG--LGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred hCcceEEEECCCCCccCc------CChHHh-hhhhhhcccccCC-CccccchH--HHHHHhhheeccccccccccccchh
Confidence 478899999997 44443 677776 8889999888874 56666433 7888888887733211 1
Q ss_pred ccCCCcceecCCc-----------cccCCCcccEEEeccCCC-----------ceeecccccccccCCCCCCCCCCCCCC
Q 038160 73 QGLPKLRCLYPGM-----------HTSEWPALEILSVHRCDK-----------LKIFTEDLSQNNENDQLGIPAQQPPLP 130 (270)
Q Consensus 73 ~~~~~L~~~~~~~-----------~~~~~~~L~~L~i~~c~~-----------l~~~~~~~~~~~~~~~~~~~~~~~l~~ 130 (270)
..+.+|+.+.... ....+..|+.+.+..+.. +........ ..... .. .
T Consensus 639 ~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~--~~~~~--~~---~--- 708 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLS--IEGCS--KR---T--- 708 (889)
T ss_pred hhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhh--hcccc--cc---e---
Confidence 1133333221100 011244444444444332 111110000 00000 00 0
Q ss_pred CccccccccCcCCCCCCCEEEecCcccccccccc-ccccccc-ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCC
Q 038160 131 LEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQ-DSKLGPI-FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGC 208 (270)
Q Consensus 131 ~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c 208 (270)
.......+.+|+.|.|.+|...+..... ....... ++++..+.+.+|+..+... +....|+|++|++..|
T Consensus 709 ------~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~--~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 709 ------LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT--WLLFAPHLTSLSLVSC 780 (889)
T ss_pred ------eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc--hhhccCcccEEEEecc
Confidence 0000122777888888888665432211 0111122 5566666677776665532 2245677888888888
Q ss_pred cCCcccCC
Q 038160 209 KELIHLVT 216 (270)
Q Consensus 209 ~~l~~l~~ 216 (270)
+.+++..+
T Consensus 781 ~~~e~~i~ 788 (889)
T KOG4658|consen 781 RLLEDIIP 788 (889)
T ss_pred cccccCCC
Confidence 77776543
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.73 E-value=0.00021 Score=68.72 Aligned_cols=55 Identities=22% Similarity=0.137 Sum_probs=31.9
Q ss_pred cccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 173 QYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 173 ~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
++|+.|+++++. +..++ . .+.+|+.|+++++ +++.+ +..+..+++|+.|++++++
T Consensus 402 s~L~~LdLS~N~-LssIP-~---l~~~L~~L~Ls~N-qLt~L--P~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGNR-LTSLP-M---LPSGLLSLSVYRN-QLTRL--PESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCCc-CCCCC-c---chhhhhhhhhccC-ccccc--ChHHhhccCCCeEECCCCC
Confidence 466677777653 44332 2 2345666666653 45543 2234567788888888774
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.72 E-value=3e-05 Score=50.00 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=28.3
Q ss_pred ccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 174 YLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 174 ~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
+|++|++++| .++.+++..+..+++|++|++++ .+++.+. +..+..+++|++|+++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEE-TTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccC-HHHHcCCCCCCEEeCcCC
Confidence 4455555554 34444444344555555555552 3344332 233455555555555554
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=9.8e-06 Score=71.12 Aligned_cols=86 Identities=17% Similarity=0.121 Sum_probs=42.1
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCC-----CcccCcCCcEEEeeCCcCCcccCChh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPS-----SSVSFRNLAKLVAFGCKELIHLVTSS 218 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-----~~~~~~~L~~L~i~~c~~l~~l~~~~ 218 (270)
++.|++|++++-..+.. .. ......++.|..|.++.|.--.--.+. ....||+|++|++.+. ++.+.-+..
T Consensus 245 ~~~L~~LdLs~N~li~~--~~-~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~ 320 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDF--DQ-GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLN 320 (505)
T ss_pred hhHHhhccccCCccccc--cc-ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccc
Confidence 55667777766543332 11 112334677777777765422111122 1345777777777754 333332222
Q ss_pred HHhhccCCcEEEEec
Q 038160 219 TAKTLVRLVKVQVYG 233 (270)
Q Consensus 219 ~~~~l~~L~~L~i~~ 233 (270)
-...+++|+.|.+..
T Consensus 321 ~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 321 HLRTLENLKHLRITL 335 (505)
T ss_pred hhhccchhhhhhccc
Confidence 334445555555443
No 23
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00026 Score=62.92 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=40.3
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeec
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
.+.++++|++++| .++.++. -..+|+ +|.+++|.+++.++. .-.++|++|.+++|+++..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-----LP~sLt-----sL~Lsnc~nLtsLP~----~LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-----LPNELT-----EITIENCNNLTTLPG----SIPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-----CCCCCc-----EEEccCCCCcccCCc----hhhhhhhheEccCcccccccc
Confidence 4677888888888 6666531 112343 446778888766543 113578888888887777666
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.58 E-value=1.7e-06 Score=79.14 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+.-|.+|+|+.++++. .|.+.- .-.|+-.|.+++. ++..+ |...+-+|.-|-+|+
T Consensus 102 l~dLt~lDLShNqL~E------vP~~LE-~AKn~iVLNLS~N-~IetI-Pn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLRE------VPTNLE-YAKNSIVLNLSYN-NIETI-PNSLFINLTDLLFLD 156 (1255)
T ss_pred cccceeeecchhhhhh------cchhhh-hhcCcEEEEcccC-ccccC-CchHHHhhHhHhhhc
Confidence 4556777777777765 444433 4566667777653 34433 544555555555553
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.57 E-value=4.5e-06 Score=79.25 Aligned_cols=43 Identities=35% Similarity=0.515 Sum_probs=25.0
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCC
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPK 77 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~ 77 (270)
...+|+.|.+..| .++++++. .+.+++|++|+|....|..+|.
T Consensus 285 ~~~~L~~l~~~~n-el~yip~~--le~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 285 RITSLVSLSAAYN-ELEYIPPF--LEGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred hhhhHHHHHhhhh-hhhhCCCc--ccccceeeeeeehhccccccch
Confidence 3344444444443 35555443 4567888888777666666665
No 26
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00025 Score=62.98 Aligned_cols=132 Identities=12% Similarity=0.143 Sum_probs=75.3
Q ss_pred eeEEeccCCCcceecCCccccCCC-cccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCC
Q 038160 68 TTLRLQGLPKLRCLYPGMHTSEWP-ALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAM 146 (270)
Q Consensus 68 ~~L~L~~~~~L~~~~~~~~~~~~~-~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~ 146 (270)
+.|++++| .++.++ .+| +|++|.+++|.+++.+|... .++
T Consensus 55 ~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~~L--------------------------------P~n 95 (426)
T PRK15386 55 GRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPGSI--------------------------------PEG 95 (426)
T ss_pred CEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCchh--------------------------------hhh
Confidence 34467777 666654 255 58888888888887766211 457
Q ss_pred CCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCC
Q 038160 147 IKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRL 226 (270)
Q Consensus 147 L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 226 (270)
|+.|++.+|.++..+ .++|+.|++.. .....+ + .--++|++|.+.++........+ ..-.++|
T Consensus 96 Le~L~Ls~Cs~L~sL----------P~sLe~L~L~~-n~~~~L-~---~LPssLk~L~I~~~n~~~~~~lp--~~LPsSL 158 (426)
T PRK15386 96 LEKLTVCHCPEISGL----------PESVRSLEIKG-SATDSI-K---NVPNGLTSLSINSYNPENQARID--NLISPSL 158 (426)
T ss_pred hhheEccCccccccc----------ccccceEEeCC-CCCccc-c---cCcchHhheeccccccccccccc--cccCCcc
Confidence 888888888776543 24577777753 222211 1 11246778887544322111111 0112589
Q ss_pred cEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 227 VKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 227 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
+.|.|++|..+. .. + ..-.+|++|++.+.
T Consensus 159 k~L~Is~c~~i~-LP--~--------~LP~SLk~L~ls~n 187 (426)
T PRK15386 159 KTLSLTGCSNII-LP--E--------KLPESLQSITLHIE 187 (426)
T ss_pred cEEEecCCCccc-Cc--c--------cccccCcEEEeccc
Confidence 999999997442 10 0 02257888876553
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.50 E-value=1.3e-05 Score=69.30 Aligned_cols=214 Identities=16% Similarity=0.055 Sum_probs=104.7
Q ss_pred CCCccEEEEeccccc---eecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccc---cceeEeeeEEeccCC
Q 038160 3 LPNLEALEISAINVD---KIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQ---LQHLELTTLRLQGLP 76 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~---~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~---L~~L~L~~L~L~~~~ 76 (270)
.++|++|+++++.+. ..|.. ++..+. .+++|+.|++++|.--... ...++.+.+ |++| +++++.
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~--~~~~l~-~~~~L~~L~l~~~~~~~~~--~~~~~~l~~~~~L~~L-----~ls~~~ 119 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQS--LLQGLT-KGCGLQELDLSDNALGPDG--CGVLESLLRSSSLQEL-----KLNNNG 119 (319)
T ss_pred CCCceEEeccccccCCcchHHHH--HHHHHH-hcCceeEEEccCCCCChhH--HHHHHHHhccCcccEE-----EeeCCc
Confidence 567888888875444 12222 233333 5779999999887543222 112333333 6655 555543
Q ss_pred CcceecCC---ccccCC-CcccEEEeccCCCcee-----ecccc--cccccCCCCCCCCCCCCCCCccccccccCcCCCC
Q 038160 77 KLRCLYPG---MHTSEW-PALEILSVHRCDKLKI-----FTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLA 145 (270)
Q Consensus 77 ~L~~~~~~---~~~~~~-~~L~~L~i~~c~~l~~-----~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~ 145 (270)
+...... .....+ ++|++|++++|. ++. +.... ...++.++..--.+ .. ...+.+.......+
T Consensus 120 -~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l---~~-~~~~~l~~~l~~~~ 193 (319)
T cd00116 120 -LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGI---GD-AGIRALAEGLKANC 193 (319)
T ss_pred -cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCC---ch-HHHHHHHHHHHhCC
Confidence 2110000 011234 778888888885 321 11000 11222222110000 00 00000000011256
Q ss_pred CCCEEEecCccccccccccc-ccccccccccceEEEecCcchhhhcC-CCcc----cCcCCcEEEeeCCcCCcccCCh--
Q 038160 146 MIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLLILLP-SSSV----SFRNLAKLVAFGCKELIHLVTS-- 217 (270)
Q Consensus 146 ~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~----~~~~L~~L~i~~c~~l~~l~~~-- 217 (270)
+|+.|++++|. +....... ......+++|++|++++|. +.+... .... ..+.|++|++.+|. +++....
T Consensus 194 ~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l 270 (319)
T cd00116 194 NLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDL 270 (319)
T ss_pred CCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHH
Confidence 99999999983 33211100 0112347899999999975 332110 1011 24799999999884 4322111
Q ss_pred -hHHhhccCCcEEEEecCC
Q 038160 218 -STAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 218 -~~~~~l~~L~~L~i~~c~ 235 (270)
.....+++|+.++++++.
T Consensus 271 ~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 271 AEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHhcCCCccEEECCCCC
Confidence 223445789999999984
No 28
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.45 E-value=1.4e-05 Score=73.36 Aligned_cols=203 Identities=20% Similarity=0.176 Sum_probs=92.3
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+.+|++|.+..+++..+... . +.+|.|+.+.++.. +++.-.-+.-+-.+.-|..|+ |++- +|+..+
T Consensus 54 lqkLEHLs~~HN~L~~vhGE------L-s~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lD-----LShN-qL~EvP 119 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGE------L-SDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILD-----LSHN-QLREVP 119 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhh------h-ccchhhHHHhhhcc-ccccCCCCchhcccccceeee-----cchh-hhhhcc
Confidence 55788888888877775322 1 37888888888763 454322121244566555554 3332 222222
Q ss_pred CCccccCCCcccEEEeccCCCceeeccccccccc---CCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNE---NDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLK 159 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~ 159 (270)
..- ..-.++-.|++++. ++..+|......+. .++..-..++.+-+ + .-.+.+|++|.+++-+ |.
T Consensus 120 ~~L--E~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPP-Q--------~RRL~~LqtL~Ls~NP-L~ 186 (1255)
T KOG0444|consen 120 TNL--EYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPP-Q--------IRRLSMLQTLKLSNNP-LN 186 (1255)
T ss_pred hhh--hhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCH-H--------HHHHhhhhhhhcCCCh-hh
Confidence 211 11234555666654 34444422100111 11100000000000 0 0014455555655543 22
Q ss_pred ccccccccccccccccceEEEecCcch-hhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcc
Q 038160 160 QLCKQDSKLGPIFQYLEILGVYHSQSL-LILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMT 238 (270)
Q Consensus 160 ~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 238 (270)
+...+. .+.+.+|+.|.+++-..- .+++++ ...+.||+.++++ |++|..+ +.....+++|+.|.+++.. ++
T Consensus 187 hfQLrQ---LPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS-~N~Lp~v--Pecly~l~~LrrLNLS~N~-it 258 (1255)
T KOG0444|consen 187 HFQLRQ---LPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLS-ENNLPIV--PECLYKLRNLRRLNLSGNK-IT 258 (1255)
T ss_pred HHHHhc---CccchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccc-ccCCCcc--hHHHhhhhhhheeccCcCc-ee
Confidence 111111 233555666666654322 233333 5556666666666 5555432 3344566667776666652 44
Q ss_pred eE
Q 038160 239 EV 240 (270)
Q Consensus 239 ~~ 240 (270)
++
T Consensus 259 eL 260 (1255)
T KOG0444|consen 259 EL 260 (1255)
T ss_pred ee
Confidence 44
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.36 E-value=1.7e-05 Score=72.45 Aligned_cols=94 Identities=19% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCCCCEEEecCc-ccccccccccccccccccccceEEEecCcchhhhcCC-CcccCcCCcEEEeeCCcCCcccCChhHHh
Q 038160 144 LAMIKELKLYRP-YHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPS-SSVSFRNLAKLVAFGCKELIHLVTSSTAK 221 (270)
Q Consensus 144 ~~~L~~L~i~~c-~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~ 221 (270)
.+.|++|++.+| .................++|+.+++++|..+.+.... ....+++|++|.+.+|..+++......+.
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 666777776663 2211111000112223466677777766654433211 12236677777766677666655555666
Q ss_pred hccCCcEEEEecCCCc
Q 038160 222 TLVRLVKVQVYGCRAM 237 (270)
Q Consensus 222 ~l~~L~~L~i~~c~~l 237 (270)
.+++|++|++++|..+
T Consensus 293 ~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCcccEEeeecCccc
Confidence 6777777777777655
No 30
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.17 E-value=2.8e-05 Score=60.43 Aligned_cols=153 Identities=24% Similarity=0.267 Sum_probs=93.6
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+.+...|.++.. +++.++|. ++.+.+||.|+ +++ ..++.++.. ...+|+|+.|++.-. .+..+|.+
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppn--ia~l~nlevln-----~~n-nqie~lp~~--issl~klr~lnvgmn-rl~~lprg- 97 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPN--IAELKNLEVLN-----LSN-NQIEELPTS--ISSLPKLRILNVGMN-RLNILPRG- 97 (264)
T ss_pred chhhhhhhhcccC-ceeecCCc--HHHhhhhhhhh-----ccc-chhhhcChh--hhhchhhhheecchh-hhhcCccc-
Confidence 6677777888764 56666555 78888888774 333 233444432 255777777776533 45555532
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
++.+|.|+.|++.+- ++.+-.. ++-...+..|+.|++++ .+.+.+++
T Consensus 98 -----------------------------fgs~p~levldltyn-nl~e~~l--pgnff~m~tlralyl~d-ndfe~lp~ 144 (264)
T KOG0617|consen 98 -----------------------------FGSFPALEVLDLTYN-NLNENSL--PGNFFYMTTLRALYLGD-NDFEILPP 144 (264)
T ss_pred -----------------------------cCCCchhhhhhcccc-ccccccC--CcchhHHHHHHHHHhcC-CCcccCCh
Confidence 123777777776654 3332111 11233567788888876 34666666
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
+ .+.+.+|+.|.+.+..=+ . .+-..+.+..|++|+|.+.
T Consensus 145 d-vg~lt~lqil~lrdndll-~--lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 145 D-VGKLTNLQILSLRDNDLL-S--LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred h-hhhhcceeEEeeccCchh-h--CcHHHHHHHHHHHHhcccc
Confidence 6 777888888888875432 2 2334677888888888886
No 31
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.99 E-value=0.00026 Score=61.99 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=42.0
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
.++++.+|++++++++. +|.++. -+.+|++|++++. .+..+++. +|++ +|+.|.
T Consensus 250 ~L~~l~vLDLRdNklke------~Pde~c-lLrsL~rLDlSNN-~is~Lp~s--Lgnl-hL~~L~ 303 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLKE------VPDEIC-LLRSLERLDLSNN-DISSLPYS--LGNL-HLKFLA 303 (565)
T ss_pred ccccceeeecccccccc------CchHHH-HhhhhhhhcccCC-ccccCCcc--cccc-eeeehh
Confidence 57889999999999986 566666 7889999999874 67776555 6777 777665
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.78 E-value=0.0013 Score=51.97 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=9.2
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
++++|+|.|+.++.|-. +.. .+.+|++|+++++ .++.+. .+..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~Ie~---L~~----~l~~L~~L~Ls~N-~I~~l~---~l~~L~~L~~L~ 70 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN---LGA----TLDKLEVLDLSNN-QITKLE---GLPGLPRLKTLD 70 (175)
T ss_dssp ----------------S-----T----T-TT--EEE-TTS---S--T---T----TT--EEE
T ss_pred ccccccccccccccccc---hhh----hhcCCCEEECCCC-CCcccc---CccChhhhhhcc
Confidence 45666666666665411 110 3566666666664 344332 144455555554
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.72 E-value=0.00045 Score=65.93 Aligned_cols=86 Identities=27% Similarity=0.319 Sum_probs=54.9
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
||+|++|.+.|..+..-+-. ..+.+||||..|+++++ +++.+ .+++.|++||.|.++.|++.....+..+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~-----~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrnLe~e~~~~l~~L- 216 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFS-----QLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRNLEFESYQDLIDL- 216 (699)
T ss_pred CcccceEEecCceecchhHH-----HHhhccCccceeecCCC-CccCc---HHHhccccHHHHhccCCCCCchhhHHHH-
Confidence 78888888887444331110 11127899999999885 45543 5678888888886665555554444433
Q ss_pred CCccccCCCcccEEEeccCCC
Q 038160 83 PGMHTSEWPALEILSVHRCDK 103 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~ 103 (270)
..+.+|+.|+|+.-.+
T Consensus 217 -----F~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 217 -----FNLKKLRVLDISRDKN 232 (699)
T ss_pred -----hcccCCCeeecccccc
Confidence 3467777888777654
No 34
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.61 E-value=0.00038 Score=66.43 Aligned_cols=113 Identities=17% Similarity=0.089 Sum_probs=56.0
Q ss_pred CCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhh
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 222 (270)
.+|+|++|.|.+..-...-+ ......+|+|..|+|++++ ++++ .+..++.||+.|.+.+..--.. .......+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF---~~lc~sFpNL~sLDIS~Tn-I~nl--~GIS~LknLq~L~mrnLe~e~~-~~l~~LF~ 218 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDF---SQLCASFPNLRSLDISGTN-ISNL--SGISRLKNLQVLSMRNLEFESY-QDLIDLFN 218 (699)
T ss_pred hCcccceEEecCceecchhH---HHHhhccCccceeecCCCC-ccCc--HHHhccccHHHHhccCCCCCch-hhHHHHhc
Confidence 37777777776652111100 1123357777777777653 3332 2345666666666665433221 11112345
Q ss_pred ccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecC
Q 038160 223 LVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLF 264 (270)
Q Consensus 223 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 264 (270)
+.+|+.|+|++-....+-..-+. -.+- ..++|+|+.|+..
T Consensus 219 L~~L~vLDIS~~~~~~~~~ii~q-Ylec-~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDDTKIIEQ-YLEC-GMVLPELRFLDCS 258 (699)
T ss_pred ccCCCeeeccccccccchHHHHH-HHHh-cccCccccEEecC
Confidence 77788888887643221100000 0000 1258888888765
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.56 E-value=0.0019 Score=50.96 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=30.2
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+.+|+.|+++++ +++.+- ..+.+++|++|++++. .++.+.......+|+|++|++.+ +++.++-.......+
T Consensus 41 l~~L~~L~Ls~N-~I~~l~-----~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l 112 (175)
T PF14580_consen 41 LDKLEVLDLSNN-QITKLE-----GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSL 112 (175)
T ss_dssp -TT--EEE-TTS---S--T-----T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-
T ss_pred hcCCCEEECCCC-CCcccc-----CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcC
Confidence 667788888777 344331 1234677888888763 34443211112477888888764 345554333344567
Q ss_pred cCCcEEEEecCC
Q 038160 224 VRLVKVQVYGCR 235 (270)
Q Consensus 224 ~~L~~L~i~~c~ 235 (270)
++|+.|++.+.|
T Consensus 113 ~~L~~L~L~~NP 124 (175)
T PF14580_consen 113 PKLRVLSLEGNP 124 (175)
T ss_dssp TT--EEE-TT-G
T ss_pred CCcceeeccCCc
Confidence 778888877765
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.55 E-value=0.0024 Score=38.12 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=28.4
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCcccc
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYI 50 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~ 50 (270)
++|++|++++++++.+ |..+. .+++|++|+++++ .++++
T Consensus 1 ~~L~~L~l~~N~i~~l------~~~l~-~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL------PPELS-NLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSH------GGHGT-TCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCccc------CchHh-CCCCCCEEEecCC-CCCCC
Confidence 5899999999988874 33343 8999999999987 45554
No 37
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.12 E-value=0.00026 Score=55.12 Aligned_cols=90 Identities=26% Similarity=0.445 Sum_probs=43.4
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
+||-|+.|++.++++.. +.+|..+| .+..|+.|++.+. +.+.+++. +|++++||.|.++.-++-.+|+
T Consensus 100 s~p~levldltynnl~e----~~lpgnff-~m~tlralyl~dn-dfe~lp~d--vg~lt~lqil~lrdndll~lpk---- 167 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNE----NSLPGNFF-YMTTLRALYLGDN-DFEILPPD--VGKLTNLQILSLRDNDLLSLPK---- 167 (264)
T ss_pred CCchhhhhhcccccccc----ccCCcchh-HHHHHHHHHhcCC-CcccCChh--hhhhcceeEEeeccCchhhCcH----
Confidence 34444444444433332 11333333 3344444444332 33333333 5677777776555444444332
Q ss_pred cCCccccCCCcccEEEeccCCCceeec
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
....+.+|++|.|.+. .++.+|
T Consensus 168 ----eig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 168 ----EIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred ----HHHHHHHHHHHhcccc-eeeecC
Confidence 1123556777777775 466666
No 38
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.00087 Score=53.40 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=47.2
Q ss_pred cccccceEEEecCcchhhhcCC-CcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcc
Q 038160 171 IFQYLEILGVYHSQSLLILLPS-SSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMT 238 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 238 (270)
.+++++.|.+.+|..+.+...+ ...-+++|+.|+|++|+++++-.. .....+++|+.|.+.+.+.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhhh
Confidence 3677888888888877664322 123578899999999988877533 345677888888888876554
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.69 E-value=0.0008 Score=58.81 Aligned_cols=57 Identities=30% Similarity=0.375 Sum_probs=28.4
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++|+.|+|+.++++.|-+. .|..+++|-+|-+++-.+++++ +...+++|..|+.|.
T Consensus 90 l~~LRrLdLS~N~Is~I~p~------AF~GL~~l~~Lvlyg~NkI~~l-~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPD------AFKGLASLLSLVLYGNNKITDL-PKGAFGGLSSLQRLL 146 (498)
T ss_pred hhhhceecccccchhhcChH------hhhhhHhhhHHHhhcCCchhhh-hhhHhhhHHHHHHHh
Confidence 44555555555555554221 1114555555555554555555 334456666665444
No 40
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.50 E-value=0.00022 Score=62.42 Aligned_cols=57 Identities=23% Similarity=0.166 Sum_probs=33.0
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCC
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGC 208 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c 208 (270)
++++..|++++- +++++.++ +..+.+|++|++++. .+..++++ .+++ .|+.|.+.+-
T Consensus 251 L~~l~vLDLRdN-klke~Pde----~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 251 LNSLLVLDLRDN-KLKEVPDE----ICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGN 307 (565)
T ss_pred cccceeeecccc-ccccCchH----HHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCC
Confidence 666666666665 45554332 345677777777763 35555444 4444 5666666554
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.0022 Score=51.17 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=54.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCccc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHL 214 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l 214 (270)
+++++.|.+.+|..+.....+. .....++|+.|+|++|+.+++..-.....|+||+.|.+.+.+.....
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~--l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLER--LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred cchhhhheeccccchhhHHHHH--hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhch
Confidence 8889999999999888765432 23468999999999999998866555677899999999988765543
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.95 E-value=0.0029 Score=55.38 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=37.8
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhcccccccee
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL 65 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 65 (270)
.-.+++|+.++++. +|.+.|+.+++|+.|++++. .++.+.| ..+.++.+|..|
T Consensus 68 ~tveirLdqN~I~~------iP~~aF~~l~~LRrLdLS~N-~Is~I~p-~AF~GL~~l~~L 120 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS------IPPGAFKTLHRLRRLDLSKN-NISFIAP-DAFKGLASLLSL 120 (498)
T ss_pred cceEEEeccCCccc------CChhhccchhhhceeccccc-chhhcCh-HhhhhhHhhhHH
Confidence 34567888888887 45666668999999999874 5666544 446777777655
No 43
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.92 E-value=0.0062 Score=58.71 Aligned_cols=91 Identities=22% Similarity=0.274 Sum_probs=56.0
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE---------------
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE--------------- 66 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~--------------- 66 (270)
.|++||.|+|+++.+.. +|+..+.+++.|+.|+++|. +++.++ ..+.+++.|++|.
T Consensus 381 ~~~hLKVLhLsyNrL~~------fpas~~~kle~LeeL~LSGN-kL~~Lp--~tva~~~~L~tL~ahsN~l~~fPe~~~l 451 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNS------FPASKLRKLEELEELNLSGN-KLTTLP--DTVANLGRLHTLRAHSNQLLSFPELAQL 451 (1081)
T ss_pred cccceeeeeeccccccc------CCHHHHhchHHhHHHhcccc-hhhhhh--HHHHhhhhhHHHhhcCCceeechhhhhc
Confidence 57888889988887765 55543337777888888884 676664 3366777777665
Q ss_pred --eeeEEeccCCCcceecCCccccCCCcccEEEeccCCC
Q 038160 67 --LTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDK 103 (270)
Q Consensus 67 --L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~ 103 (270)
|+.+|++ |-+|+...... ....|+|++|++++...
T Consensus 452 ~qL~~lDlS-~N~L~~~~l~~-~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 452 PQLKVLDLS-CNNLSEVTLPE-ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CcceEEecc-cchhhhhhhhh-hCCCcccceeeccCCcc
Confidence 3333432 12222221111 11237899999988875
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.43 E-value=0.036 Score=32.98 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=6.5
Q ss_pred hhccCCcEEEEecC
Q 038160 221 KTLVRLVKVQVYGC 234 (270)
Q Consensus 221 ~~l~~L~~L~i~~c 234 (270)
..+++|+.|+++++
T Consensus 21 ~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 21 SNLPNLETLNLSNN 34 (44)
T ss_dssp TTCTTSSEEEETSS
T ss_pred hCCCCCCEEEecCC
Confidence 34444444444444
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=0.072 Score=45.35 Aligned_cols=60 Identities=27% Similarity=0.466 Sum_probs=36.8
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEecc
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQG 74 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~ 74 (270)
..+++|++.++.+.+ |.. +.+ +...+|.|++|.++ |..+... ++.++ +..-+|+++.|.+
T Consensus 71 ~~v~elDL~~N~iSd-Wse--I~~-ile~lP~l~~LNls-~N~L~s~-----I~~lp-~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 71 TDVKELDLTGNLISD-WSE--IGA-ILEQLPALTTLNLS-CNSLSSD-----IKSLP-LPLKNLRVLVLNG 130 (418)
T ss_pred hhhhhhhcccchhcc-HHH--HHH-HHhcCccceEeecc-CCcCCCc-----cccCc-ccccceEEEEEcC
Confidence 457788888888877 554 322 22278999999986 4455422 56665 4444455556544
No 46
>PLN03150 hypothetical protein; Provisional
Probab=93.86 E-value=0.099 Score=49.85 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=56.1
Q ss_pred ccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCc
Q 038160 6 LEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGM 85 (270)
Q Consensus 6 L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~ 85 (270)
++.|+|.++++... +|..+. .+++|+.|+++++ .+.+..|.. ++.+++|+.|+ |++. ++.+..+..
T Consensus 420 v~~L~L~~n~L~g~-----ip~~i~-~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~Ld-----Ls~N-~lsg~iP~~ 485 (623)
T PLN03150 420 IDGLGLDNQGLRGF-----IPNDIS-KLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLD-----LSYN-SFNGSIPES 485 (623)
T ss_pred EEEEECCCCCcccc-----CCHHHh-CCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEE-----CCCC-CCCCCCchH
Confidence 66788887777532 555555 8899999999987 454433432 67888888774 5444 333222221
Q ss_pred cccCCCcccEEEeccCCCceeec
Q 038160 86 HTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 86 ~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
...+++|+.|+++++.--..+|
T Consensus 486 -l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 486 -LGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred -HhcCCCCCEEECcCCcccccCC
Confidence 2467889999998885333444
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.57 E-value=0.11 Score=41.80 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=6.5
Q ss_pred CCcccEEEeccC
Q 038160 90 WPALEILSVHRC 101 (270)
Q Consensus 90 ~~~L~~L~i~~c 101 (270)
+|+|+.|++++-
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 555555555443
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.28 E-value=0.066 Score=47.86 Aligned_cols=12 Identities=17% Similarity=0.136 Sum_probs=6.5
Q ss_pred CCcccEEEeccC
Q 038160 90 WPALEILSVHRC 101 (270)
Q Consensus 90 ~~~L~~L~i~~c 101 (270)
.+.|+.|++++.
T Consensus 185 ~~~L~~L~ls~N 196 (394)
T COG4886 185 LSNLNNLDLSGN 196 (394)
T ss_pred hhhhhheeccCC
Confidence 445555555554
No 49
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.11 E-value=0.11 Score=24.04 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=9.7
Q ss_pred CcccEEEeccCCCceeec
Q 038160 91 PALEILSVHRCDKLKIFT 108 (270)
Q Consensus 91 ~~L~~L~i~~c~~l~~~~ 108 (270)
++|++|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 468888888886 66553
No 50
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.48 E-value=0.085 Score=27.36 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=11.5
Q ss_pred CcCCcEEEeeCCcCCccc
Q 038160 197 FRNLAKLVAFGCKELIHL 214 (270)
Q Consensus 197 ~~~L~~L~i~~c~~l~~l 214 (270)
+++|++|++++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 356666777777666654
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.81 E-value=0.16 Score=42.24 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=28.7
Q ss_pred ccccceEEEecCc--chhhhcCCCcccCcCCcEEEeeCCcCCccc-CChhHHhhccCCcEEEEecCC
Q 038160 172 FQYLEILGVYHSQ--SLLILLPSSSVSFRNLAKLVAFGCKELIHL-VTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 172 l~~L~~L~l~~c~--~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l-~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.|+|+++++++.. .+..+.| ...+.||.+|++.+|+-...- .-..++.-+++|+.|+-..+.
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred CCceeEEeecCCccccccccch--hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 4666666666532 1122211 233555666666666433210 112244555666666655553
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=0.048 Score=46.40 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=37.2
Q ss_pred ccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceE
Q 038160 170 PIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 170 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 240 (270)
..+|++..+.+..|+-=+.-.......||.+.-|.+. -.++-++........+++|..|.+++-|-...+
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~-~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLG-ANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhc-ccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3477777777777642111111123334444444443 233444433344566788888888888744444
No 53
>PLN03150 hypothetical protein; Provisional
Probab=90.69 E-value=0.33 Score=46.32 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=36.9
Q ss_pred ccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeec
Q 038160 36 LTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 36 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
++.|++.++ .+....+.. ++.+++|+.| +|++. ++++..+. ....+++|+.|+++++.--..+|
T Consensus 420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L-----~Ls~N-~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP 483 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSI-----NLSGN-SIRGNIPP-SLGSITSLEVLDLSYNSFNGSIP 483 (623)
T ss_pred EEEEECCCC-CccccCCHH-HhCCCCCCEE-----ECCCC-cccCcCCh-HHhCCCCCCEEECCCCCCCCCCc
Confidence 677888775 455443433 6778887777 44443 23322221 12467888888888884322344
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.47 E-value=0.15 Score=45.60 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=13.4
Q ss_pred CccEEEEecCcCccccCCchhhccccccceeE
Q 038160 35 SLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 35 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+|+.|++++- .++.++.. ++.++.|+.|+
T Consensus 141 nL~~L~l~~N-~i~~l~~~--~~~l~~L~~L~ 169 (394)
T COG4886 141 NLKELDLSDN-KIESLPSP--LRNLPNLKNLD 169 (394)
T ss_pred hccccccccc-chhhhhhh--hhccccccccc
Confidence 5666655542 33333211 44555555554
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=90.26 E-value=0.015 Score=53.30 Aligned_cols=65 Identities=34% Similarity=0.425 Sum_probs=33.7
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTE 109 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~ 109 (270)
-|..|+.+.++.. .++.++.. ++++..|.+++|..-.++.+|. . ..+--|+.|.+++. +++.+|+
T Consensus 96 ~f~~Le~liLy~n-~~r~ip~~--i~~L~~lt~l~ls~NqlS~lp~------~---lC~lpLkvli~sNN-kl~~lp~ 160 (722)
T KOG0532|consen 96 AFVSLESLILYHN-CIRTIPEA--ICNLEALTFLDLSSNQLSHLPD------G---LCDLPLKVLIVSNN-KLTSLPE 160 (722)
T ss_pred HHHHHHHHHHHhc-cceecchh--hhhhhHHHHhhhccchhhcCCh------h---hhcCcceeEEEecC-ccccCCc
Confidence 5556666666542 23444333 5677777666544333333321 1 12223676766665 5776664
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.24 E-value=0.0085 Score=51.64 Aligned_cols=87 Identities=17% Similarity=0.073 Sum_probs=48.3
Q ss_pred CCCCCEEEecCcccccccccccc----cccccccccceEEEecCcchhh-----hcCCCcccCcCCcEEEeeCCcCCccc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDS----KLGPIFQYLEILGVYHSQSLLI-----LLPSSSVSFRNLAKLVAFGCKELIHL 214 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~----~~~~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~~L~~L~i~~c~~l~~l 214 (270)
++.|+.|++.+-. ++ ..+. ...+.+++|++|++++|- ++. +.......+|+|+.|.+.++.--.+-
T Consensus 212 ~~~LevLdl~DNt-ft---~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 212 CPHLEVLDLRDNT-FT---LEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred CCcceeeecccch-hh---hHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 7778888777641 11 1000 112346788888888884 211 11112234788888888877543332
Q ss_pred CC--hhHHhhccCCcEEEEecCC
Q 038160 215 VT--SSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 215 ~~--~~~~~~l~~L~~L~i~~c~ 235 (270)
.. ...+...|.|++|.+.+|.
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCccc
Confidence 11 1112336888888888885
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=90.16 E-value=0.081 Score=45.15 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=13.8
Q ss_pred ccCcccCcCCCccEEEEecCc
Q 038160 25 IPAAVFPHFQSLTRLVVWYCD 45 (270)
Q Consensus 25 ~p~~~~~~l~~L~~L~l~~c~ 45 (270)
+|.... -|.+|+++.++.|.
T Consensus 206 l~f~l~-~f~~l~~~~~s~~~ 225 (490)
T KOG1259|consen 206 LSFNLN-AFRNLKTLKFSALS 225 (490)
T ss_pred cccchH-Hhhhhheeeeeccc
Confidence 344433 67889998888883
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.18 E-value=0.37 Score=23.80 Aligned_cols=12 Identities=25% Similarity=0.024 Sum_probs=5.6
Q ss_pred ccEEEEecCcCcc
Q 038160 36 LTRLVVWYCDKLK 48 (270)
Q Consensus 36 L~~L~l~~c~~l~ 48 (270)
|++|++++| .++
T Consensus 2 L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGN-NLT 13 (22)
T ss_dssp ESEEEETSS-EES
T ss_pred ccEEECCCC-cCE
Confidence 444555544 344
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.84 E-value=0.017 Score=48.62 Aligned_cols=104 Identities=19% Similarity=0.122 Sum_probs=61.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+.+.++|+..+| +|..+.. ...|+.|+.|.++- +++..+. ....|.+|++|++.. +.+.++--.....++
T Consensus 18 l~~vkKLNcwg~-~L~DIsi-----c~kMp~lEVLsLSv-NkIssL~--pl~rCtrLkElYLRk-N~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI-----CEKMPLLEVLSLSV-NKISSLA--PLQRCTRLKELYLRK-NCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCC-CccHHHH-----HHhcccceeEEeec-cccccch--hHHHHHHHHHHHHHh-cccccHHHHHHHhcC
Confidence 557788888888 4554422 33588888888875 2343332 235677888887774 234444333456788
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccc---eeecCccCeeec
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKE---EIVFCKLKTLQL 263 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~---~~~~~~L~~L~l 263 (270)
|+|+.|.+.+.+=-.+. +.... .-.+|+|++|+-
T Consensus 88 psLr~LWL~ENPCc~~a------g~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEA------GQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred chhhhHhhccCCccccc------chhHHHHHHHHcccchhccC
Confidence 88888888775422222 11100 126888888764
No 60
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=86.49 E-value=0.099 Score=44.63 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=24.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecC
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYC 44 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c 44 (270)
.|.++.|+++++++..+-. .. .+++|+.|++++.
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-------La-~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-------LA-ELPQLQLLDLSGN 339 (490)
T ss_pred ccceeEEeccccceeeehh-------hh-hcccceEeecccc
Confidence 5778888888887776422 11 6788888888774
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=82.92 E-value=0.13 Score=49.05 Aligned_cols=19 Identities=42% Similarity=0.770 Sum_probs=16.5
Q ss_pred cCcccCcCCCccEEEEecCc
Q 038160 26 PAAVFPHFQSLTRLVVWYCD 45 (270)
Q Consensus 26 p~~~~~~l~~L~~L~l~~c~ 45 (270)
|..++ .|..|++|.+++|.
T Consensus 102 pi~if-pF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 102 PISIF-PFRSLRVLELRGCD 120 (1096)
T ss_pred Cceec-cccceeeEEecCcc
Confidence 66777 89999999999994
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=80.09 E-value=0.9 Score=41.04 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=31.8
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
.+.+|+.|++.+++++++-.. . +++++|++|++++- .++.+.+ +..++.|+.|+
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~------l-~~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~ 146 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENL------L-SSLVNLQVLDLSFN-KITKLEG---LSTLTLLKELN 146 (414)
T ss_pred cccceeeeeccccchhhcccc------h-hhhhcchheecccc-ccccccc---hhhccchhhhe
Confidence 456777777777777765320 1 16788888887763 4444433 34455555553
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=79.42 E-value=0.91 Score=37.86 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=6.7
Q ss_pred cCCCccEEEEec
Q 038160 32 HFQSLTRLVVWY 43 (270)
Q Consensus 32 ~l~~L~~L~l~~ 43 (270)
.+|+|++|.++.
T Consensus 63 ~Lp~LkkL~lsd 74 (260)
T KOG2739|consen 63 KLPKLKKLELSD 74 (260)
T ss_pred CcchhhhhcccC
Confidence 455566665544
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.91 E-value=1.4 Score=22.55 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=11.4
Q ss_pred CCCccEEEEeccccce
Q 038160 3 LPNLEALEISAINVDK 18 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~ 18 (270)
+++|++|+|.++.++.
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00370 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 4677777777777765
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.91 E-value=1.4 Score=22.55 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=11.4
Q ss_pred CCCccEEEEeccccce
Q 038160 3 LPNLEALEISAINVDK 18 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~ 18 (270)
+++|++|+|.++.++.
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00369 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 4677777777777765
No 66
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=77.68 E-value=1.1 Score=21.76 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=15.6
Q ss_pred CccEEEEeccccceeccc
Q 038160 5 NLEALEISAINVDKIWHY 22 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~ 22 (270)
+|.+|++.+++++++|+|
T Consensus 1 ~LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEG 18 (20)
T ss_pred CcEEEECCCCChHHhcCc
Confidence 578899999999999986
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.87 E-value=11 Score=27.35 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=19.8
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEE
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQV 231 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 231 (270)
.++|+.+.+.+ .++.+.......+++++++.+.+ ++..+. ...+..+++++.+.+
T Consensus 34 ~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~-~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 34 CTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIG-DNAFSNCTNLKNIDI 88 (129)
T ss_dssp -TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE--TTTTTT-TTECEEEE
T ss_pred ccccccccccc--cccccceeeeecccccccccccc--cccccc-ccccccccccccccc
Confidence 34455555543 13333222233344555555543 222221 123344555555555
No 68
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=75.94 E-value=1.1 Score=41.63 Aligned_cols=84 Identities=21% Similarity=0.301 Sum_probs=40.1
Q ss_pred ccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE-----------------ee
Q 038160 6 LEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE-----------------LT 68 (270)
Q Consensus 6 L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~-----------------L~ 68 (270)
|+.|.+++++++. .|..++ ..+.|..|+++.| .+..+++. ++.+.+|+.|. |.
T Consensus 145 Lkvli~sNNkl~~------lp~~ig-~~~tl~~ld~s~n-ei~slpsq--l~~l~slr~l~vrRn~l~~lp~El~~LpLi 214 (722)
T KOG0532|consen 145 LKVLIVSNNKLTS------LPEEIG-LLPTLAHLDVSKN-EIQSLPSQ--LGYLTSLRDLNVRRNHLEDLPEELCSLPLI 214 (722)
T ss_pred ceeEEEecCcccc------CCcccc-cchhHHHhhhhhh-hhhhchHH--hhhHHHHHHHHHhhhhhhhCCHHHhCCcee
Confidence 4445555555544 233333 4555555555544 33333222 44455554433 44
Q ss_pred eEEeccCCCcceecCCccccCCCcccEEEeccCC
Q 038160 69 TLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 69 ~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~ 102 (270)
.|+++ |-++..++... .++..|++|.+.+.|
T Consensus 215 ~lDfS-cNkis~iPv~f--r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 215 RLDFS-CNKISYLPVDF--RKMRHLQVLQLENNP 245 (722)
T ss_pred eeecc-cCceeecchhh--hhhhhheeeeeccCC
Confidence 55553 33444444322 356667777766665
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.96 E-value=0.25 Score=41.79 Aligned_cols=69 Identities=23% Similarity=0.296 Sum_probs=38.0
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeE---------Eecc
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTL---------RLQG 74 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L---------~L~~ 74 (270)
.+.++|+..|.++.+|-- . -.++.|+.|.++- .++..+.+ +..+.+|+.|.|+.- +|.+
T Consensus 19 ~~vkKLNcwg~~L~DIsi-------c-~kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-------C-EKMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHhhhhcccCCCccHHHH-------H-HhcccceeEEeec-cccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 345667777766666311 0 1577788887753 23333322 455666665553221 2467
Q ss_pred CCCcceecCC
Q 038160 75 LPKLRCLYPG 84 (270)
Q Consensus 75 ~~~L~~~~~~ 84 (270)
+|+|+.+|..
T Consensus 87 lpsLr~LWL~ 96 (388)
T KOG2123|consen 87 LPSLRTLWLD 96 (388)
T ss_pred CchhhhHhhc
Confidence 7777776653
No 70
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=72.21 E-value=4.7 Score=32.69 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=43.2
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCc--chhhhcCCCcccCcCCcEEEeeCCcCCccc-CChhHH
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQ--SLLILLPSSSVSFRNLAKLVAFGCKELIHL-VTSSTA 220 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~--~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l-~~~~~~ 220 (270)
++.|..|.+.+- .+..+- +.....+++|+.|.+.+.. .+.++. ....||.|++|.+.+-+--..- .-..+.
T Consensus 63 l~rL~tLll~nN-rIt~I~---p~L~~~~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 63 LPRLHTLLLNNN-RITRID---PDLDTFLPNLKTLILTNNSIQELGDLD--PLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred ccccceEEecCC-cceeec---cchhhhccccceEEecCcchhhhhhcc--hhccCCccceeeecCCchhcccCceeEEE
Confidence 556666666554 233321 2223446777777777632 222221 2345677777777654321110 011234
Q ss_pred hhccCCcEEEEecC
Q 038160 221 KTLVRLVKVQVYGC 234 (270)
Q Consensus 221 ~~l~~L~~L~i~~c 234 (270)
..+|+|+.|++.+-
T Consensus 137 ~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcceEeehhhh
Confidence 55677777777764
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=69.86 E-value=5 Score=29.14 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=24.3
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhcccccccee
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL 65 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 65 (270)
.++|+.+.+.. .++.+.. ..+..+++|+.+.+.+ .++.+ +...+.+++.++.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~------~~F~~~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i 63 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGE------NAFSNCTSLKSINFPN--NLTSI-GDNAFSNCKSLESI 63 (129)
T ss_dssp -TT--EEEETS-T--EE-T------TTTTT-TT-SEEEESS--TTSCE--TTTTTT-TT-EEE
T ss_pred CCCCCEEEECC-CeeEeCh------hhcccccccccccccc--ccccc-ceeeeecccccccc
Confidence 34677777654 4555433 3333667888888865 35554 33345666666655
No 72
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.21 E-value=4.8 Score=20.89 Aligned_cols=17 Identities=47% Similarity=0.702 Sum_probs=13.0
Q ss_pred CCCccEEEEecccccee
Q 038160 3 LPNLEALEISAINVDKI 19 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~ 19 (270)
+.+|++|++.++.++++
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 46788888888888764
No 73
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=61.89 E-value=0.59 Score=44.78 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=7.2
Q ss_pred CCccEEEEeccccce
Q 038160 4 PNLEALEISAINVDK 18 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~ 18 (270)
++|++|+|++|.++.
T Consensus 209 ~~LkhLDlsyN~L~~ 223 (1096)
T KOG1859|consen 209 PKLKHLDLSYNCLRH 223 (1096)
T ss_pred ccccccccccchhcc
Confidence 444455554444444
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=50.77 E-value=5.8 Score=35.81 Aligned_cols=54 Identities=26% Similarity=0.295 Sum_probs=38.5
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEe
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLEL 67 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L 67 (270)
.+++|++|+++++.+++++.. . .++.|+.|++.++ .+..+.. +..++.|+.+++
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l-----~---~l~~L~~L~l~~N-~i~~~~~---~~~l~~L~~l~l 169 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGL-----S---TLTLLKELNLSGN-LISDISG---LESLKSLKLLDL 169 (414)
T ss_pred hhhcchheeccccccccccch-----h---hccchhhheeccC-cchhccC---CccchhhhcccC
Confidence 478999999999999987652 2 6788999999885 3444322 344666666653
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=50.35 E-value=11 Score=18.53 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=8.1
Q ss_pred CCcccEEEeccCC
Q 038160 90 WPALEILSVHRCD 102 (270)
Q Consensus 90 ~~~L~~L~i~~c~ 102 (270)
+++|++|++++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 3678889998885
No 76
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.19 E-value=6.8 Score=36.40 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=54.4
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
++|.+..+.|++|++.++-.. ..+....|+|++|.+++..+.... ...+.+++.+.|++|-+.+-|-.+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~----sslsq~apklk~L~LS~N~~~~~~-----~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDAL----SSLSQIAPKLKTLDLSHNHSKISS-----ESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhh----hHHHHhcchhheeecccchhhhcc-----hhhhhhhcCCCHHHeeecCCccccch
Confidence 467788888888888775331 112126899999999886333322 22345555555777788887777666
Q ss_pred cCCc-----cccCCCcccEEE
Q 038160 82 YPGM-----HTSEWPALEILS 97 (270)
Q Consensus 82 ~~~~-----~~~~~~~L~~L~ 97 (270)
.-.. +...||+|..|+
T Consensus 287 ~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhHHHHHHHHHhcchheeec
Confidence 4322 223588876665
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=33.99 E-value=3.6 Score=31.33 Aligned_cols=56 Identities=9% Similarity=0.080 Sum_probs=23.1
Q ss_pred cceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 175 LEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 175 L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
|+.+++++ +.++.+++.....||..+.+++++ +.+.++... ...+|+|+.|.+...
T Consensus 55 l~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE--~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 55 LTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE--LAAMPALRSLNLRFN 110 (177)
T ss_pred EEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHH--HhhhHHhhhcccccC
Confidence 33344443 223333333333444555555442 233333221 334455555555544
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=32.33 E-value=26 Score=18.15 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=9.0
Q ss_pred CCccEEEEeccccc
Q 038160 4 PNLEALEISAINVD 17 (270)
Q Consensus 4 ~~L~~L~l~~~~l~ 17 (270)
++|++|+|+++.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777766554
No 79
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=28.02 E-value=17 Score=31.92 Aligned_cols=94 Identities=20% Similarity=0.159 Sum_probs=47.3
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.|.|+++.++.+.+..--.. -.-.+.. .+++|+.|++.+.. ++.-....+...++.+.+ |+.+++++|- ++.--
T Consensus 184 ~~~leevr~~qN~I~~eG~~-al~eal~-~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~--L~El~l~dcl-l~~~G 257 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVT-ALAEALE-HCPHLEVLDLRDNT-FTLEGSVALAKALSSWPH--LRELNLGDCL-LENEG 257 (382)
T ss_pred ccccceEEEecccccCchhH-HHHHHHH-hCCcceeeecccch-hhhHHHHHHHHHhcccch--heeecccccc-ccccc
Confidence 37888999888666531000 0111222 68999999998753 222222223333344332 2445666661 21100
Q ss_pred ----CCccccCCCcccEEEeccCC
Q 038160 83 ----PGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 83 ----~~~~~~~~~~L~~L~i~~c~ 102 (270)
........|+|+.|.+.+|.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcch
Confidence 00011136788888887774
Done!