Query 038160
Match_columns 270
No_of_seqs 117 out of 1341
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 13:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.6 5.8E-15 2E-19 127.5 16.2 203 3-240 80-293 (328)
2 2xwt_C Thyrotropin receptor; s 99.5 4.4E-13 1.5E-17 110.2 14.5 204 4-269 31-239 (239)
3 3o6n_A APL1; leucine-rich repe 99.5 1.1E-12 3.8E-17 115.5 16.9 104 144-267 247-350 (390)
4 4fcg_A Uncharacterized protein 99.5 9.5E-13 3.2E-17 113.6 14.2 201 2-234 102-311 (328)
5 3zyj_A Leucine-rich repeat-con 99.4 2.5E-12 8.5E-17 115.2 16.9 224 3-267 63-290 (440)
6 3zyi_A Leucine-rich repeat-con 99.4 3.1E-12 1.1E-16 114.9 16.3 223 4-267 75-301 (452)
7 3oja_B Anopheles plasmodium-re 99.4 4.3E-12 1.5E-16 118.0 17.3 230 2-267 97-356 (597)
8 4fmz_A Internalin; leucine ric 99.4 6.3E-12 2.1E-16 108.8 17.0 103 144-267 220-322 (347)
9 2id5_A Lingo-1, leucine rich r 99.4 7.8E-12 2.7E-16 112.9 18.0 55 4-66 32-86 (477)
10 2ast_B S-phase kinase-associat 99.4 4.8E-14 1.6E-18 121.6 3.2 87 4-105 70-156 (336)
11 3zyi_A Leucine-rich repeat-con 99.4 3.9E-12 1.3E-16 114.3 15.7 202 2-235 97-301 (452)
12 1ozn_A Reticulon 4 receptor; N 99.4 4.4E-12 1.5E-16 106.9 15.1 86 3-102 31-116 (285)
13 3zyj_A Leucine-rich repeat-con 99.4 3.5E-12 1.2E-16 114.2 15.1 202 2-235 86-290 (440)
14 3t6q_A CD180 antigen; protein- 99.4 7.8E-12 2.7E-16 116.1 17.9 85 3-102 277-361 (606)
15 4fmz_A Internalin; leucine ric 99.4 5.5E-12 1.9E-16 109.1 15.2 232 2-267 86-344 (347)
16 3v47_A TOLL-like receptor 5B a 99.4 5E-12 1.7E-16 113.3 15.2 110 143-267 297-406 (455)
17 2z80_A TOLL-like receptor 2, v 99.4 3.5E-12 1.2E-16 110.9 13.5 56 3-66 51-106 (353)
18 3o6n_A APL1; leucine-rich repe 99.4 1.3E-11 4.5E-16 108.6 17.3 84 171-267 246-329 (390)
19 2id5_A Lingo-1, leucine rich r 99.4 2.2E-11 7.6E-16 109.9 17.9 233 2-267 78-331 (477)
20 3bz5_A Internalin-J, INLJ; leu 99.4 6.4E-12 2.2E-16 113.3 14.2 92 2-107 62-164 (457)
21 2z66_A Variable lymphocyte rec 99.4 1.4E-11 4.7E-16 104.9 15.5 226 3-267 27-259 (306)
22 4ay9_X Follicle-stimulating ho 99.4 1.1E-11 3.9E-16 107.7 15.2 221 3-264 29-254 (350)
23 2xwt_C Thyrotropin receptor; s 99.4 1.2E-11 4.2E-16 101.5 14.1 180 2-236 53-238 (239)
24 3v47_A TOLL-like receptor 5B a 99.4 2.1E-11 7E-16 109.3 16.4 85 171-266 297-381 (455)
25 3vq2_A TLR4, TOLL-like recepto 99.3 7.4E-12 2.5E-16 116.3 13.1 224 2-267 326-556 (606)
26 3oja_B Anopheles plasmodium-re 99.3 3.5E-11 1.2E-15 111.9 17.3 90 3-108 74-163 (597)
27 3o53_A Protein LRIM1, AGAP0063 99.3 8.9E-12 3E-16 106.8 12.3 216 3-267 33-248 (317)
28 1xku_A Decorin; proteoglycan, 99.3 4.6E-11 1.6E-15 102.7 16.7 210 3-240 51-278 (330)
29 3vq2_A TLR4, TOLL-like recepto 99.3 6.3E-11 2.1E-15 110.0 18.3 231 2-267 283-532 (606)
30 3rgz_A Protein brassinosteroid 99.3 1.5E-11 5.3E-16 117.6 14.2 109 144-267 441-549 (768)
31 3t6q_A CD180 antigen; protein- 99.3 3.6E-11 1.2E-15 111.6 15.7 237 2-267 299-558 (606)
32 3ogk_B Coronatine-insensitive 99.3 5.3E-13 1.8E-17 123.5 1.9 89 144-235 435-524 (592)
33 2ast_B S-phase kinase-associat 99.3 5.9E-13 2E-17 114.7 2.1 188 2-234 91-282 (336)
34 1ozn_A Reticulon 4 receptor; N 99.3 9.8E-11 3.3E-15 98.6 15.7 183 2-235 54-236 (285)
35 3oja_A Leucine-rich immune mol 99.3 3.1E-11 1.1E-15 109.6 13.4 216 3-267 33-248 (487)
36 1ogq_A PGIP-2, polygalacturona 99.3 4.2E-11 1.5E-15 102.5 13.3 233 4-268 50-303 (313)
37 1h6u_A Internalin H; cell adhe 99.3 3.5E-11 1.2E-15 102.8 12.2 188 3-235 40-228 (308)
38 2z63_A TOLL-like receptor 4, v 99.3 1.4E-10 4.8E-15 106.7 17.0 230 3-267 281-529 (570)
39 1o6v_A Internalin A; bacterial 99.3 2.9E-10 1E-14 102.4 17.9 78 172-266 286-363 (466)
40 1p9a_G Platelet glycoprotein I 99.2 1.8E-10 6.1E-15 97.6 15.4 175 2-234 8-182 (290)
41 3bz5_A Internalin-J, INLJ; leu 99.2 4.4E-11 1.5E-15 107.8 11.9 50 2-65 104-153 (457)
42 1xku_A Decorin; proteoglycan, 99.2 1.4E-10 4.7E-15 99.8 14.5 224 5-266 32-273 (330)
43 2o6q_A Variable lymphocyte rec 99.2 2.1E-10 7.1E-15 95.9 15.1 85 144-235 132-216 (270)
44 1ogq_A PGIP-2, polygalacturona 99.2 7.5E-11 2.6E-15 100.9 12.5 205 34-266 50-278 (313)
45 1o6v_A Internalin A; bacterial 99.2 1.5E-10 5.1E-15 104.3 15.1 78 144-234 286-363 (466)
46 2ft3_A Biglycan; proteoglycan, 99.2 5.2E-10 1.8E-14 96.3 17.5 56 3-66 53-108 (332)
47 2ft3_A Biglycan; proteoglycan, 99.2 2.7E-10 9.3E-15 98.0 15.3 83 2-102 76-158 (332)
48 2o6q_A Variable lymphocyte rec 99.2 2.4E-10 8.2E-15 95.6 14.2 200 5-267 17-216 (270)
49 4ay9_X Follicle-stimulating ho 99.2 2.7E-10 9.2E-15 99.0 14.9 200 2-233 52-255 (350)
50 3rgz_A Protein brassinosteroid 99.2 1.8E-10 6.1E-15 110.2 15.0 56 3-66 393-448 (768)
51 2z81_A CD282 antigen, TOLL-lik 99.2 1.9E-10 6.5E-15 105.5 14.5 62 172-234 333-397 (549)
52 4ecn_A Leucine-rich repeat pro 99.2 5.1E-10 1.7E-14 108.0 17.8 105 145-267 728-838 (876)
53 2p1m_B Transport inhibitor res 99.2 2.7E-12 9.1E-17 118.8 1.7 58 144-205 288-345 (594)
54 2z80_A TOLL-like receptor 2, v 99.2 1.2E-10 4.2E-15 101.1 12.0 93 2-108 74-166 (353)
55 3j0a_A TOLL-like receptor 5; m 99.2 6.1E-10 2.1E-14 107.5 17.4 61 171-234 312-372 (844)
56 3g06_A SSPH2 (leucine-rich rep 99.2 1.2E-09 3.9E-14 102.0 18.3 76 172-267 220-295 (622)
57 3j0a_A TOLL-like receptor 5; m 99.2 6.4E-10 2.2E-14 107.4 17.0 85 3-101 23-107 (844)
58 2z66_A Variable lymphocyte rec 99.2 1.5E-10 5.2E-15 98.4 10.9 206 2-235 50-259 (306)
59 2z63_A TOLL-like receptor 4, v 99.2 3.6E-10 1.2E-14 103.9 14.2 87 143-235 443-529 (570)
60 1ziw_A TOLL-like receptor 3; i 99.1 7.2E-10 2.5E-14 104.3 15.5 112 144-267 503-620 (680)
61 2z62_A TOLL-like receptor 4, v 99.1 5.9E-10 2E-14 93.3 13.0 199 4-233 28-233 (276)
62 4ecn_A Leucine-rich repeat pro 99.1 5.6E-10 1.9E-14 107.7 13.9 116 144-267 696-817 (876)
63 3rfs_A Internalin B, repeat mo 99.1 1.2E-09 4.1E-14 91.4 13.9 177 3-235 40-216 (272)
64 4eco_A Uncharacterized protein 99.1 1.2E-09 4.1E-14 102.3 15.2 104 146-267 489-598 (636)
65 1wwl_A Monocyte differentiatio 99.1 7.3E-10 2.5E-14 94.6 12.3 207 2-266 93-306 (312)
66 1ziw_A TOLL-like receptor 3; i 99.1 2.4E-09 8.2E-14 100.7 17.0 248 4-266 248-546 (680)
67 2z81_A CD282 antigen, TOLL-lik 99.1 7.5E-10 2.5E-14 101.5 13.1 182 4-235 26-207 (549)
68 3o53_A Protein LRIM1, AGAP0063 99.1 4.1E-10 1.4E-14 96.4 10.1 191 32-266 32-224 (317)
69 3rfs_A Internalin B, repeat mo 99.1 2E-09 6.7E-14 90.1 12.9 177 32-266 39-215 (272)
70 1h6t_A Internalin B; cell adhe 99.1 1.5E-09 5.2E-14 91.8 12.0 167 3-235 45-211 (291)
71 4eco_A Uncharacterized protein 99.0 1.5E-09 5.2E-14 101.6 13.0 116 144-267 456-577 (636)
72 3ogk_B Coronatine-insensitive 99.0 5.3E-11 1.8E-15 110.1 2.8 57 2-65 291-347 (592)
73 2p1m_B Transport inhibitor res 99.0 1.5E-11 5.3E-16 113.7 -1.0 34 32-66 287-320 (594)
74 1m9s_A Internalin B; cell inva 99.0 9.1E-10 3.1E-14 102.4 10.8 167 3-235 42-208 (605)
75 1h6u_A Internalin H; cell adhe 99.0 2.9E-09 9.9E-14 90.8 13.2 167 2-209 61-228 (308)
76 4glp_A Monocyte differentiatio 99.0 1.4E-09 4.8E-14 92.7 10.7 106 144-266 196-304 (310)
77 3m19_A Variable lymphocyte rec 99.0 5.1E-09 1.8E-13 86.5 13.8 176 5-235 15-190 (251)
78 3oja_A Leucine-rich immune mol 99.0 3.1E-09 1.1E-13 96.4 13.1 192 32-266 32-224 (487)
79 2z7x_B TOLL-like receptor 1, v 99.0 9.3E-09 3.2E-13 93.6 16.1 63 171-235 322-385 (520)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 6.7E-09 2.3E-13 95.7 15.2 59 198-267 450-508 (562)
81 3g06_A SSPH2 (leucine-rich rep 99.0 1.1E-08 3.7E-13 95.4 16.4 76 144-235 220-295 (622)
82 4ezg_A Putative uncharacterize 99.0 5.4E-09 1.9E-13 83.1 11.3 150 32-235 42-192 (197)
83 1p9a_G Platelet glycoprotein I 99.0 1.1E-08 3.6E-13 86.6 13.5 176 3-234 30-205 (290)
84 4glp_A Monocyte differentiatio 98.9 7.2E-10 2.5E-14 94.5 5.9 204 3-235 90-305 (310)
85 2z62_A TOLL-like receptor 4, v 98.9 8E-09 2.7E-13 86.4 12.2 177 2-208 50-234 (276)
86 1wwl_A Monocyte differentiatio 98.9 1.3E-09 4.3E-14 93.1 7.3 182 2-235 119-307 (312)
87 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1E-08 3.5E-13 94.5 13.7 56 3-66 51-106 (562)
88 1jl5_A Outer protein YOPM; leu 98.9 4.4E-08 1.5E-12 88.1 16.6 52 173-235 317-368 (454)
89 3m19_A Variable lymphocyte rec 98.9 2E-08 6.7E-13 82.9 13.1 158 3-210 34-191 (251)
90 2z7x_B TOLL-like receptor 1, v 98.9 2.7E-08 9.4E-13 90.5 14.9 106 143-267 372-479 (520)
91 1jl5_A Outer protein YOPM; leu 98.9 1.1E-09 3.7E-14 98.5 5.0 91 2-108 9-107 (454)
92 4ezg_A Putative uncharacterize 98.9 2.5E-08 8.6E-13 79.2 12.3 151 57-266 41-191 (197)
93 2ca6_A RAN GTPase-activating p 98.9 4.6E-10 1.6E-14 98.6 2.2 245 3-267 31-314 (386)
94 4g8a_A TOLL-like receptor 4; l 98.8 3.9E-08 1.3E-12 91.1 13.9 227 2-266 347-577 (635)
95 1h6t_A Internalin B; cell adhe 98.8 1.9E-08 6.6E-13 85.0 10.2 167 32-266 44-210 (291)
96 1m9s_A Internalin B; cell inva 98.8 1.7E-08 5.8E-13 93.9 9.9 167 32-266 41-207 (605)
97 3e4g_A ATP synthase subunit S, 98.7 3.9E-09 1.3E-13 82.2 3.3 91 145-240 61-155 (176)
98 1xeu_A Internalin C; cellular 98.7 5.7E-08 2E-12 80.8 9.9 77 145-234 106-182 (263)
99 3cvr_A Invasion plasmid antige 98.7 1E-07 3.6E-12 87.9 12.0 77 5-108 60-136 (571)
100 1xeu_A Internalin C; cellular 98.7 2.2E-08 7.6E-13 83.4 5.5 144 3-209 40-183 (263)
101 4g8a_A TOLL-like receptor 4; l 98.6 6.2E-07 2.1E-11 83.0 15.1 224 3-266 327-552 (635)
102 2v70_A SLIT-2, SLIT homolog 2 98.6 7E-07 2.4E-11 72.2 13.0 151 7-209 14-164 (220)
103 1z7x_W Ribonuclease inhibitor; 98.6 3.2E-09 1.1E-13 95.0 -1.5 90 172-267 226-324 (461)
104 2o6s_A Variable lymphocyte rec 98.6 2.7E-07 9.2E-12 73.7 9.9 150 32-234 26-175 (208)
105 3sb4_A Hypothetical leucine ri 98.6 3.2E-07 1.1E-11 78.7 10.9 102 144-262 225-327 (329)
106 1z7x_W Ribonuclease inhibitor; 98.6 1.7E-09 5.8E-14 96.9 -3.6 88 145-235 313-409 (461)
107 2ca6_A RAN GTPase-activating p 98.6 3.4E-08 1.2E-12 86.6 4.7 218 2-235 58-314 (386)
108 3e4g_A ATP synthase subunit S, 98.6 2.8E-08 9.7E-13 77.3 3.7 90 173-270 61-153 (176)
109 2o6s_A Variable lymphocyte rec 98.6 1.2E-06 4E-11 69.9 12.9 84 3-101 27-110 (208)
110 2ell_A Acidic leucine-rich nuc 98.5 8.7E-08 3E-12 73.9 5.7 111 144-267 48-158 (168)
111 3e6j_A Variable lymphocyte rec 98.5 1.4E-06 4.9E-11 70.7 12.7 137 25-209 34-170 (229)
112 2v9t_B SLIT homolog 2 protein 98.5 1.6E-06 5.6E-11 70.0 13.0 149 8-209 15-163 (220)
113 2ell_A Acidic leucine-rich nuc 98.5 2.9E-07 1E-11 70.9 7.9 132 32-210 22-159 (168)
114 3cvr_A Invasion plasmid antige 98.5 7.4E-07 2.5E-11 82.2 11.9 156 3-235 79-241 (571)
115 1dce_A Protein (RAB geranylger 98.5 6.5E-09 2.2E-13 96.0 -2.3 204 3-263 348-567 (567)
116 2xot_A Amphoterin-induced prot 98.5 1.5E-06 5.3E-11 75.4 12.9 173 7-234 21-199 (361)
117 2xot_A Amphoterin-induced prot 98.5 6.7E-07 2.3E-11 77.7 10.1 160 3-209 38-200 (361)
118 3goz_A Leucine-rich repeat-con 98.5 1.5E-08 5.3E-13 88.2 -0.9 213 4-235 22-264 (362)
119 3e6j_A Variable lymphocyte rec 98.4 1.8E-06 6.2E-11 70.1 10.7 132 3-184 39-170 (229)
120 2je0_A Acidic leucine-rich nuc 98.4 2.5E-07 8.4E-12 69.8 5.0 109 144-265 41-149 (149)
121 2v9t_B SLIT homolog 2 protein 98.3 4.7E-06 1.6E-10 67.2 10.4 132 4-184 32-163 (220)
122 2je0_A Acidic leucine-rich nuc 98.3 6.3E-07 2.2E-11 67.5 4.6 59 172-232 87-148 (149)
123 2v70_A SLIT-2, SLIT homolog 2 98.2 1.2E-05 3.9E-10 64.9 11.0 151 37-235 14-164 (220)
124 1a9n_A U2A', U2A'; complex (nu 98.2 2.4E-06 8.1E-11 66.4 6.2 83 145-235 42-124 (176)
125 1a9n_A U2A', U2A'; complex (nu 98.1 5.2E-06 1.8E-10 64.4 6.5 131 32-209 17-151 (176)
126 3sb4_A Hypothetical leucine ri 98.1 2.8E-05 9.7E-10 66.4 11.3 63 172-240 225-288 (329)
127 1w8a_A SLIT protein; signaling 98.1 3.4E-05 1.2E-09 60.7 10.5 78 7-101 11-88 (192)
128 1dce_A Protein (RAB geranylger 98.0 2.1E-05 7.1E-10 72.6 9.1 122 35-204 442-566 (567)
129 2o6r_A Variable lymphocyte rec 98.0 6E-05 2.1E-09 58.2 10.4 37 172-209 99-135 (177)
130 2o6r_A Variable lymphocyte rec 97.9 6.4E-05 2.2E-09 58.1 10.0 83 4-101 28-110 (177)
131 2wfh_A SLIT homolog 2 protein 97.8 0.0001 3.5E-09 58.0 9.8 12 144-155 125-136 (193)
132 1w8a_A SLIT protein; signaling 97.8 0.00012 4E-09 57.6 10.1 60 172-234 53-112 (192)
133 3goz_A Leucine-rich repeat-con 97.8 1.4E-05 4.9E-10 69.2 4.7 216 3-235 49-295 (362)
134 2wfh_A SLIT homolog 2 protein 97.7 0.00025 8.4E-09 55.8 10.1 76 7-101 13-88 (193)
135 1ds9_A Outer arm dynein; leuci 97.7 3.9E-06 1.3E-10 66.4 -1.1 79 144-230 92-180 (198)
136 4b8c_D Glucose-repressible alc 97.7 6.6E-05 2.3E-09 71.3 7.0 105 3-156 223-327 (727)
137 2ra8_A Uncharacterized protein 97.6 0.00021 7.2E-09 62.0 9.2 62 172-234 251-317 (362)
138 4b8c_D Glucose-repressible alc 97.6 6.5E-05 2.2E-09 71.3 6.3 59 144-209 269-327 (727)
139 3g39_A Variable lymphocyte rec 97.5 0.0004 1.4E-08 53.4 8.0 59 172-233 53-111 (170)
140 4fdw_A Leucine rich hypothetic 97.4 0.0036 1.2E-07 55.0 14.5 191 5-234 158-355 (401)
141 2r9u_A Variable lymphocyte rec 97.4 0.00053 1.8E-08 52.9 8.2 84 144-234 32-115 (174)
142 3g39_A Variable lymphocyte rec 97.4 0.00042 1.4E-08 53.2 7.5 13 32-44 52-64 (170)
143 2r9u_A Variable lymphocyte rec 97.4 0.00029 1E-08 54.4 6.2 13 32-44 55-67 (174)
144 2ra8_A Uncharacterized protein 97.3 0.00048 1.7E-08 59.8 7.0 173 2-209 137-318 (362)
145 1ds9_A Outer arm dynein; leuci 97.2 7.5E-05 2.6E-09 58.9 0.6 58 3-71 47-104 (198)
146 4fdw_A Leucine rich hypothetic 97.1 0.014 4.7E-07 51.2 14.7 65 171-240 269-337 (401)
147 3un9_A NLR family member X1; l 97.1 2.9E-05 9.8E-10 67.8 -2.7 12 223-234 238-249 (372)
148 2ifg_A High affinity nerve gro 96.8 0.0032 1.1E-07 53.8 7.7 84 3-102 30-114 (347)
149 2ifg_A High affinity nerve gro 96.4 0.0045 1.5E-07 52.8 6.2 85 144-235 30-114 (347)
150 4fs7_A Uncharacterized protein 95.1 0.57 2E-05 40.4 14.0 80 144-233 296-375 (394)
151 4fs7_A Uncharacterized protein 94.1 0.89 3E-05 39.2 12.9 58 171-233 295-352 (394)
152 3un9_A NLR family member X1; l 92.9 0.0073 2.5E-07 52.5 -2.6 115 144-267 100-222 (372)
153 3rw6_A Nuclear RNA export fact 92.9 0.079 2.7E-06 43.7 3.8 16 3-18 169-184 (267)
154 1io0_A Tropomodulin; LRR prote 90.3 0.12 4E-06 39.9 2.0 90 144-235 64-162 (185)
155 3rfe_A Platelet glycoprotein I 83.7 0.72 2.5E-05 33.3 2.9 30 34-65 31-60 (130)
156 3rw6_A Nuclear RNA export fact 81.5 0.87 3E-05 37.4 2.9 62 171-235 168-231 (267)
157 1io0_A Tropomodulin; LRR prote 78.1 0.9 3.1E-05 34.8 1.8 118 143-266 34-161 (185)
158 4gt6_A Cell surface protein; l 74.8 4.7 0.00016 34.5 5.7 11 32-42 85-95 (394)
159 4gt6_A Cell surface protein; l 71.6 12 0.00042 31.9 7.6 57 172-233 310-366 (394)
160 3rfe_A Platelet glycoprotein I 55.0 7.9 0.00027 27.6 2.7 35 174-209 32-66 (130)
161 4h09_A Hypothetical leucine ri 42.7 27 0.00091 29.4 4.6 80 3-99 262-341 (379)
162 4h09_A Hypothetical leucine ri 24.6 2.1E+02 0.0071 23.6 7.2 57 172-232 262-318 (379)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.64 E-value=5.8e-15 Score=127.50 Aligned_cols=203 Identities=22% Similarity=0.278 Sum_probs=129.6
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
++++++|++++++++. +|..++ .+++|++|+++++ .+..++. .++.+++|++|+ ++++ .++.++
T Consensus 80 ~~~l~~L~L~~n~l~~------lp~~l~-~l~~L~~L~L~~n-~l~~lp~--~~~~l~~L~~L~-----Ls~n-~l~~lp 143 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ------FPDQAF-RLSHLQHMTIDAA-GLMELPD--TMQQFAGLETLT-----LARN-PLRALP 143 (328)
T ss_dssp STTCCEEEEESSCCSS------CCSCGG-GGTTCSEEEEESS-CCCCCCS--CGGGGTTCSEEE-----EESC-CCCCCC
T ss_pred ccceeEEEccCCCchh------cChhhh-hCCCCCEEECCCC-CccchhH--HHhccCCCCEEE-----CCCC-ccccCc
Confidence 5789999999988875 566666 7999999999987 4555533 368888888874 4444 333332
Q ss_pred CCccccCCCcccEEEeccCCCceeecccc-----------cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEE
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDL-----------SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELK 151 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~ 151 (270)
. ....+++|++|++++|..+..+|... .+.++.++...-.+. . +......+++|+.|+
T Consensus 144 ~--~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------~---lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 144 A--SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------S---LPASIANLQNLKSLK 212 (328)
T ss_dssp G--GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------C---CCGGGGGCTTCCEEE
T ss_pred H--HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------c---chHhhcCCCCCCEEE
Confidence 2 23467889999999988777666422 111111111000000 0 001122377888888
Q ss_pred ecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEE
Q 038160 152 LYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQV 231 (270)
Q Consensus 152 i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 231 (270)
++++ ++..+.. ....+++|++|++++|.....++ .....+++|++|++++|..+..+. ..+..+++|+.|++
T Consensus 213 L~~N-~l~~l~~----~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 213 IRNS-PLSALGP----AIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDL 284 (328)
T ss_dssp EESS-CCCCCCG----GGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCC--TTGGGCTTCCEEEC
T ss_pred ccCC-CCCcCch----hhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcc--hhhhcCCCCCEEeC
Confidence 8887 3433221 23457888888888887666553 336678888888888887766543 23577888888888
Q ss_pred ecCCCcceE
Q 038160 232 YGCRAMTEV 240 (270)
Q Consensus 232 ~~c~~l~~~ 240 (270)
++|+.+..+
T Consensus 285 ~~n~~~~~i 293 (328)
T 4fcg_A 285 RGCVNLSRL 293 (328)
T ss_dssp TTCTTCCCC
T ss_pred CCCCchhhc
Confidence 888766655
No 2
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=4.4e-13 Score=110.21 Aligned_cols=204 Identities=16% Similarity=0.145 Sum_probs=141.0
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++|++|++++++++.+.. ..+..+++|++|+++++..++.+.+ ..++++++|++| +++++.+++.+..
T Consensus 31 ~~l~~L~l~~n~l~~i~~------~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L-----~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS------HAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHI-----EIRNTRNLTYIDP 98 (239)
T ss_dssp TTCCEEEEESCCCSEECT------TTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEE-----EEEEETTCCEECT
T ss_pred CcccEEEEeCCcceEECH------HHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEE-----ECCCCCCeeEcCH
Confidence 478999999988887532 2223789999999999866777644 336778887776 6776667777665
Q ss_pred CccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCC---EEEecCcccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIK---ELKLYRPYHLKQ 160 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~---~L~i~~c~~l~~ 160 (270)
.. ...+++|++|+++++. ++.+|. + ..+++|+ .|+++++++++.
T Consensus 99 ~~-f~~l~~L~~L~l~~n~-l~~lp~-----~--------------------------~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 99 DA-LKELPLLKFLGIFNTG-LKMFPD-----L--------------------------TKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp TS-EECCTTCCEEEEEEEC-CCSCCC-----C--------------------------TTCCBCCSEEEEEEESCTTCCE
T ss_pred HH-hCCCCCCCEEeCCCCC-Cccccc-----c--------------------------ccccccccccEEECCCCcchhh
Confidence 33 2357899999999884 544441 1 1145555 999999877776
Q ss_pred cccccccccccccccc-eEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc-cCCcEEEEecCCCcc
Q 038160 161 LCKQDSKLGPIFQYLE-ILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL-VRLVKVQVYGCRAMT 238 (270)
Q Consensus 161 ~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l-~~L~~L~i~~c~~l~ 238 (270)
+... ....+++|+ +|+++++. ++.++.. ....++|++|+++++..++.+.. ..+..+ ++|+.|+++++. +.
T Consensus 146 i~~~---~~~~l~~L~~~L~l~~n~-l~~i~~~-~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~-l~ 218 (239)
T 2xwt_C 146 IPVN---AFQGLCNETLTLKLYNNG-FTSVQGY-AFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTS-VT 218 (239)
T ss_dssp ECTT---TTTTTBSSEEEEECCSCC-CCEECTT-TTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCC-CC
T ss_pred cCcc---cccchhcceeEEEcCCCC-CcccCHh-hcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCc-cc
Confidence 5431 234588999 99998864 5555444 33348999999999877876643 345677 899999999973 55
Q ss_pred eEeeccCCCCccceeecCccCeeecCCCCCC
Q 038160 239 EVVINDKDGVEKEEIVFCKLKTLQLFDLDSL 269 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 269 (270)
.+.. ..+++|+.|++.++..|
T Consensus 219 ~l~~----------~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 219 ALPS----------KGLEHLKELIARNTWTL 239 (239)
T ss_dssp CCCC----------TTCTTCSEEECTTC---
T ss_pred cCCh----------hHhccCceeeccCccCC
Confidence 4421 15899999999998764
No 3
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.48 E-value=1.1e-12 Score=115.52 Aligned_cols=104 Identities=19% Similarity=0.124 Sum_probs=69.1
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|++|+++++ .+..+.. .....+++|++|+++++. ++.++.. ...+++|++|+++++ +++.+ +.....+
T Consensus 247 l~~L~~L~Ls~n-~l~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~l~~L~~L~L~~n-~l~~~--~~~~~~l 317 (390)
T 3o6n_A 247 YPGLVEVDLSYN-ELEKIMY---HPFVKMQRLERLYISNNR-LVALNLY-GQPIPTLKVLDLSHN-HLLHV--ERNQPQF 317 (390)
T ss_dssp CTTCSEEECCSS-CCCEEES---GGGTTCSSCCEEECCSSC-CCEEECS-SSCCTTCCEEECCSS-CCCCC--GGGHHHH
T ss_pred CCCccEEECCCC-cCCCcCh---hHccccccCCEEECCCCc-CcccCcc-cCCCCCCCEEECCCC-cceec--Ccccccc
Confidence 777888888877 3333221 123457889999998864 4554333 466889999999987 45543 2335678
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|+.|++++++ +.++. ...+++|+.|++.+.|
T Consensus 318 ~~L~~L~L~~N~-i~~~~----------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 318 DRLENLYLDHNS-IVTLK----------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TTCSEEECCSSC-CCCCC----------CCTTCCCSEEECCSSC
T ss_pred CcCCEEECCCCc-cceeC----------chhhccCCEEEcCCCC
Confidence 899999999885 44331 1247888888887754
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.46 E-value=9.5e-13 Score=113.59 Aligned_cols=201 Identities=20% Similarity=0.209 Sum_probs=136.1
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|++++++++. +|..+. .+++|++|+++++ .++.++. .++++++|++| +++++..+..+
T Consensus 102 ~l~~L~~L~L~~n~l~~------lp~~~~-~l~~L~~L~Ls~n-~l~~lp~--~l~~l~~L~~L-----~L~~n~~~~~~ 166 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLME------LPDTMQ-QFAGLETLTLARN-PLRALPA--SIASLNRLREL-----SIRACPELTEL 166 (328)
T ss_dssp GGTTCSEEEEESSCCCC------CCSCGG-GGTTCSEEEEESC-CCCCCCG--GGGGCTTCCEE-----EEEEETTCCCC
T ss_pred hCCCCCEEECCCCCccc------hhHHHh-ccCCCCEEECCCC-ccccCcH--HHhcCcCCCEE-----ECCCCCCcccc
Confidence 47899999999988874 555555 8999999999997 4665533 37888888877 56666555544
Q ss_pred cCCcc-------ccCCCcccEEEeccCCCceeecccc--cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEe
Q 038160 82 YPGMH-------TSEWPALEILSVHRCDKLKIFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKL 152 (270)
Q Consensus 82 ~~~~~-------~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i 152 (270)
+.... ...+++|++|+++++ +++.+|... .+.++.++..--.+.. +......+++|+.|++
T Consensus 167 p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~---------l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 167 PEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA---------LGPAIHHLPKLEELDL 236 (328)
T ss_dssp CSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC---------CCGGGGGCTTCCEEEC
T ss_pred ChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc---------CchhhccCCCCCEEEC
Confidence 43221 123788999999888 465565321 2223322221000000 0001223889999999
Q ss_pred cCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEe
Q 038160 153 YRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVY 232 (270)
Q Consensus 153 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 232 (270)
++|.....+.. ....+++|++|++++|.....++.. ...+++|++|++++|+.+..+ +.....+++|+.+.+.
T Consensus 237 s~n~~~~~~p~----~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~i--P~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 237 RGCTALRNYPP----IFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRL--PSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCBCCC----CTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCCC--CGGGGGSCTTCEEECC
T ss_pred cCCcchhhhHH----HhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhhc--cHHHhhccCceEEeCC
Confidence 99976554322 2345899999999999877766444 788999999999999987765 3456888999988877
Q ss_pred cC
Q 038160 233 GC 234 (270)
Q Consensus 233 ~c 234 (270)
..
T Consensus 310 ~~ 311 (328)
T 4fcg_A 310 PH 311 (328)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 5
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.45 E-value=2.5e-12 Score=115.20 Aligned_cols=224 Identities=17% Similarity=0.125 Sum_probs=119.6
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.+++++|+|++++++.+.. ..+ ..+++|++|+++++ .+..+ +...++++++|++|+ +++. +++.+.
T Consensus 63 ~~~l~~L~L~~n~i~~~~~-----~~~-~~l~~L~~L~Ls~n-~i~~i-~~~~~~~l~~L~~L~-----L~~n-~l~~~~ 128 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKV-----NSF-KHLRHLEILQLSRN-HIRTI-EIGAFNGLANLNTLE-----LFDN-RLTTIP 128 (440)
T ss_dssp CTTCSEEECCSCCCCEECT-----TTT-SSCSSCCEEECCSS-CCCEE-CGGGGTTCSSCCEEE-----CCSS-CCSSCC
T ss_pred CCCCcEEEccCCcCCeeCH-----HHh-hCCCCCCEEECCCC-cCCcc-ChhhccCCccCCEEE-----CCCC-cCCeeC
Confidence 3568888888887876432 222 27888888888886 45555 333467778877774 4443 333333
Q ss_pred CCccccCCCcccEEEeccCCCceeecccc---cccccCCCCCC-CCCCCCCCCccccccccCcCCCCCCCEEEecCcccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGI-PAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHL 158 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~-~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l 158 (270)
... ...+++|++|+++++. ++.++... .++++.++..- ..+..+ ..+....+++|+.|+++++ ++
T Consensus 129 ~~~-~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i--------~~~~~~~l~~L~~L~L~~n-~l 197 (440)
T 3zyj_A 129 NGA-FVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYI--------SEGAFEGLSNLRYLNLAMC-NL 197 (440)
T ss_dssp TTT-SCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEE--------CTTTTTTCSSCCEEECTTS-CC
T ss_pred HhH-hhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCccee--------CcchhhcccccCeecCCCC-cC
Confidence 221 2346677777777663 44443211 11111111100 000000 0011222667777777776 34
Q ss_pred cccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcc
Q 038160 159 KQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMT 238 (270)
Q Consensus 159 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 238 (270)
+.+. ....+++|++|+++++ .++.+.+.....+++|++|++.++ +++.+. ...+..+++|+.|+++++. +.
T Consensus 198 ~~~~-----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~ 268 (440)
T 3zyj_A 198 REIP-----NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIE-RNAFDNLQSLVEINLAHNN-LT 268 (440)
T ss_dssp SSCC-----CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEEC-TTSSTTCTTCCEEECTTSC-CC
T ss_pred cccc-----ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEC-hhhhcCCCCCCEEECCCCC-CC
Confidence 4331 1234677777777776 344554444566777777777765 344442 2334567777777777773 44
Q ss_pred eEeeccCCCCccceeecCccCeeecCCCC
Q 038160 239 EVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.+.. .....+++|+.|++.+-|
T Consensus 269 ~~~~-------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 269 LLPH-------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCT-------TTTSSCTTCCEEECCSSC
T ss_pred ccCh-------hHhccccCCCEEEcCCCC
Confidence 3311 011135777777776543
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.43 E-value=3.1e-12 Score=114.94 Aligned_cols=223 Identities=17% Similarity=0.096 Sum_probs=116.9
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
+++++|+|++++++.+.. ..+. .+++|++|+++++ .+..+.+ ..++++++|++|+ |++. +++.+..
T Consensus 75 ~~l~~L~L~~n~i~~~~~-----~~~~-~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~-----L~~n-~l~~~~~ 140 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQA-----DTFR-HLHHLEVLQLGRN-SIRQIEV-GAFNGLASLNTLE-----LFDN-WLTVIPS 140 (452)
T ss_dssp TTCSEEECCSSCCCEECT-----TTTT-TCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEE-----CCSS-CCSBCCT
T ss_pred CCccEEECcCCcCceECH-----HHcC-CCCCCCEEECCCC-ccCCcCh-hhccCcccCCEEE-----CCCC-cCCccCh
Confidence 578888888888876422 2232 7888888888886 5665533 3467778877774 4443 2333332
Q ss_pred CccccCCCcccEEEeccCCCceeecccc---cccccCCCCCC-CCCCCCCCCccccccccCcCCCCCCCEEEecCccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGI-PAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLK 159 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~-~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~ 159 (270)
.. ...+++|++|+++++. ++.++... .+.++.++..- ..+..+ ..+....+++|+.|+++++ ++.
T Consensus 141 ~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i--------~~~~~~~l~~L~~L~L~~n-~l~ 209 (452)
T 3zyi_A 141 GA-FEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYI--------SEGAFEGLFNLKYLNLGMC-NIK 209 (452)
T ss_dssp TT-SSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEE--------CTTTTTTCTTCCEEECTTS-CCS
T ss_pred hh-hcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcccc--------ChhhccCCCCCCEEECCCC-ccc
Confidence 21 2246667777776663 44443211 11111111100 000000 0011122667777777766 333
Q ss_pred ccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcce
Q 038160 160 QLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTE 239 (270)
Q Consensus 160 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 239 (270)
.+. ....+++|++|+++++. ++.+.+.....+++|++|++.++. +..+. ...+..+++|+.|+++++ ++..
T Consensus 210 ~~~-----~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~ 280 (452)
T 3zyi_A 210 DMP-----NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQ-VSLIE-RNAFDGLASLVELNLAHN-NLSS 280 (452)
T ss_dssp SCC-----CCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSS-CCSC
T ss_pred ccc-----cccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCc-CceEC-HHHhcCCCCCCEEECCCC-cCCc
Confidence 321 12346677777777654 333434435566777777777653 44332 233456777777777777 3443
Q ss_pred EeeccCCCCccceeecCccCeeecCCCC
Q 038160 240 VVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
+.. .....+++|+.|++.+.|
T Consensus 281 ~~~-------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 281 LPH-------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCT-------TSSTTCTTCCEEECCSSC
T ss_pred cCh-------HHhccccCCCEEEccCCC
Confidence 311 011136777777776643
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=4.3e-12 Score=118.04 Aligned_cols=230 Identities=18% Similarity=0.120 Sum_probs=124.4
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+|+++.+..+ |...+..+++|++|++++| .+..+ +...++++++|++|+ ++++ .++.+
T Consensus 97 ~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~-----Ls~N-~l~~~ 162 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYL------PPHVFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLS-----MSNN-NLERI 162 (597)
T ss_dssp TCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEE-----CCSS-CCCBC
T ss_pred CCCCCCEEECCCCcCCCC------CHHHHcCCCCCCEEEeeCC-CCCCC-CHHHhccCCCCCEEE-----eeCC-cCCCC
Confidence 467889999988777763 2222227888999988887 56655 334457788887775 3333 22222
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccccccCCCCCC---------CCCC------------------CCCCCccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGI---------PAQQ------------------PPLPLEKE 134 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~---------~~~~------------------~l~~~~~~ 134 (270)
.+.. ...+++|++|+++++. ++.++....+.+..+.... ..++ .+..+.--
T Consensus 163 ~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~ 240 (597)
T 3oja_B 163 EDDT-FQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240 (597)
T ss_dssp CTTT-TTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECC
T ss_pred Chhh-hhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECC
Confidence 2211 1234455555555442 2222211111221111100 0000 00000000
Q ss_pred cc-cccC--cCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCC
Q 038160 135 GC-LEKH--LGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKEL 211 (270)
Q Consensus 135 ~c-~e~~--~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l 211 (270)
.+ +.+. ...+++|+.|+++++. +..+.. .....+++|++|+++++. +..++.. ...+++|++|++++|. +
T Consensus 241 ~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~l~~~-~~~l~~L~~L~Ls~N~-l 313 (597)
T 3oja_B 241 HNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMY---HPFVKMQRLERLYISNNR-LVALNLY-GQPIPTLKVLDLSHNH-L 313 (597)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSC-CCEEES---GGGTTCSSCCEEECTTSC-CCEEECS-SSCCTTCCEEECCSSC-C
T ss_pred CCCCCCChhhccCCCCCEEECCCCc-cCCCCH---HHhcCccCCCEEECCCCC-CCCCCcc-cccCCCCcEEECCCCC-C
Confidence 00 0111 1237788888888763 333221 123457889999998864 5555433 5668899999999874 4
Q ss_pred cccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 212 IHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 212 ~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
..+ +.....+++|+.|++++|. +..+. ...+++|+.|++.+.|
T Consensus 314 ~~i--~~~~~~l~~L~~L~L~~N~-l~~~~----------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 314 LHV--ERNQPQFDRLENLYLDHNS-IVTLK----------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCC--GGGHHHHTTCSEEECCSSC-CCCCC----------CCTTCCCSEEECCSSC
T ss_pred Ccc--CcccccCCCCCEEECCCCC-CCCcC----------hhhcCCCCEEEeeCCC
Confidence 433 3345778899999999985 33331 2257888888887764
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.42 E-value=6.3e-12 Score=108.77 Aligned_cols=103 Identities=15% Similarity=0.074 Sum_probs=56.4
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|++|++++|. +..+. ....+++|++|++++|. ++.+ + ....+++|++|++++| +++++ +.+..+
T Consensus 220 ~~~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n~-l~~~-~-~~~~l~~L~~L~l~~n-~l~~~---~~~~~l 286 (347)
T 4fmz_A 220 MTRLNSLKIGNNK-ITDLS-----PLANLSQLTWLEIGTNQ-ISDI-N-AVKDLTKLKMLNVGSN-QISDI---SVLNNL 286 (347)
T ss_dssp CTTCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCSSC-CCCC-G-GGTTCTTCCEEECCSS-CCCCC---GGGGGC
T ss_pred CCcCCEEEccCCc-cCCCc-----chhcCCCCCEEECCCCc-cCCC-h-hHhcCCCcCEEEccCC-ccCCC---hhhcCC
Confidence 4556666665552 22211 12346677777777653 3332 1 2445677777777766 34443 235667
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|+.|++++|. +.+.. ......+++|++|++.+++
T Consensus 287 ~~L~~L~L~~n~-l~~~~-------~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 287 SQLNSLFLNNNQ-LGNED-------MEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TTCSEEECCSSC-CCGGG-------HHHHHTCTTCSEEECCSSS
T ss_pred CCCCEEECcCCc-CCCcC-------hhHhhccccCCEEEccCCc
Confidence 777777777774 22211 0111247888888888775
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.42 E-value=7.8e-12 Score=112.92 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=29.1
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++++|++++++++.+.. ..+. .+++|++|+++++ .+..+.+ ..++++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~-----~~~~-~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~ 86 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQ-----DEFA-SFPHLEELELNEN-IVSAVEP-GAFNNLFNLRTLG 86 (477)
T ss_dssp TTCSEEECCSSCCCEECT-----TTTT-TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECH-----hHcc-CCCCCCEEECCCC-ccCEeCh-hhhhCCccCCEEE
Confidence 456667776666665321 1122 5666666666665 3444422 2245566666655
No 10
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=4.8e-14 Score=121.56 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++++.|++.++.+...+. ..+ .+++|++|++++|. +........++.+++|++| +++++. ++...+
T Consensus 70 ~~l~~L~l~~n~l~~~~~------~~~-~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L-----~L~~~~-l~~~~~ 135 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA------EHF-SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNL-----SLEGLR-LSDPIV 135 (336)
T ss_dssp TTCSEEECTTCEECSCCC------SCC-CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEE-----ECTTCB-CCHHHH
T ss_pred ccceEEEcCCccccccch------hhc-cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEE-----eCcCcc-cCHHHH
Confidence 567777777766654322 233 67888888888874 4332122335677777666 455552 322111
Q ss_pred CccccCCCcccEEEeccCCCce
Q 038160 84 GMHTSEWPALEILSVHRCDKLK 105 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~ 105 (270)
. ....+++|++|++++|..++
T Consensus 136 ~-~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 136 N-TLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp H-HHTTCTTCSEEECTTCBSCC
T ss_pred H-HHhcCCCCCEEECCCCCCCC
Confidence 1 11246777777777775554
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.42 E-value=3.9e-12 Score=114.35 Aligned_cols=202 Identities=20% Similarity=0.168 Sum_probs=131.6
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+|++++++.+.. ..+. .+++|++|+++++ .++.+ +...++++++|++| ++++. .++.+
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~-----~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L-----~L~~N-~l~~~ 162 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEV-----GAFN-GLASLNTLELFDN-WLTVI-PSGAFEYLSKLREL-----WLRNN-PIESI 162 (452)
T ss_dssp TCTTCCEEECCSSCCCEECT-----TTTT-TCTTCCEEECCSS-CCSBC-CTTTSSSCTTCCEE-----ECCSC-CCCEE
T ss_pred CCCCCCEEECCCCccCCcCh-----hhcc-CcccCCEEECCCC-cCCcc-ChhhhcccCCCCEE-----ECCCC-Cccee
Confidence 57899999999998887522 2233 7999999999987 46665 44446788888877 45554 24444
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHL 158 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l 158 (270)
.... ...+++|++|++++|..++.++... .+.++.++...-.+..+ + ....+++|+.|+++++ ++
T Consensus 163 ~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~----~~~~l~~L~~L~Ls~N-~l 230 (452)
T 3zyi_A 163 PSYA-FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------P----NLTPLVGLEELEMSGN-HF 230 (452)
T ss_dssp CTTT-TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------C----CCTTCTTCCEEECTTS-CC
T ss_pred CHhH-HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------c----cccccccccEEECcCC-cC
Confidence 4322 3467889999998888888776432 22333222211111100 0 0123788999999988 34
Q ss_pred cccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 159 KQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 159 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
..+.. .....+++|++|+++++. ++.+.+.....+++|++|+++++ +++.+. ...+..+++|+.|++++++
T Consensus 231 ~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 231 PEIRP---GSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLP-HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SEECG---GGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC-TTSSTTCTTCCEEECCSSC
T ss_pred cccCc---ccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cCCccC-hHHhccccCCCEEEccCCC
Confidence 43322 223457899999999864 55554555677899999999987 565543 3445678899999998854
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.41 E-value=4.4e-12 Score=106.94 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=49.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.++|++|++++++++.+.. ..+ ..+++|++|+++++ .++.+.+ ..++++++|++| ++++.+.++.+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~-----~~~-~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L-----~l~~n~~l~~~~ 97 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPA-----ASF-RACRNLTILWLHSN-VLARIDA-AAFTGLALLEQL-----DLSDNAQLRSVD 97 (285)
T ss_dssp CTTCSEEECTTSCCCEECT-----TTT-TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEE-----ECCSCTTCCCCC
T ss_pred CCCceEEEeeCCcCCccCH-----HHc-ccCCCCCEEECCCC-ccceeCH-hhcCCccCCCEE-----eCCCCCCccccC
Confidence 3567777777766665321 112 26777777777765 4554422 235566666555 566665555543
Q ss_pred CCccccCCCcccEEEeccCC
Q 038160 83 PGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~ 102 (270)
... ...+++|++|+++++.
T Consensus 98 ~~~-~~~l~~L~~L~l~~n~ 116 (285)
T 1ozn_A 98 PAT-FHGLGRLHTLHLDRCG 116 (285)
T ss_dssp TTT-TTTCTTCCEEECTTSC
T ss_pred HHH-hcCCcCCCEEECCCCc
Confidence 322 2356777777777764
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.41 E-value=3.5e-12 Score=114.25 Aligned_cols=202 Identities=19% Similarity=0.173 Sum_probs=130.7
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+|++++++.+.. +.+..+++|++|+++++ .++.+ +...++.+++|++|+ +++. .++.+
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~------~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~-----L~~N-~i~~~ 151 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEI------GAFNGLANLNTLELFDN-RLTTI-PNGAFVYLSKLKELW-----LRNN-PIESI 151 (440)
T ss_dssp SCSSCCEEECCSSCCCEECG------GGGTTCSSCCEEECCSS-CCSSC-CTTTSCSCSSCCEEE-----CCSC-CCCEE
T ss_pred CCCCCCEEECCCCcCCccCh------hhccCCccCCEEECCCC-cCCee-CHhHhhccccCceee-----CCCC-ccccc
Confidence 57899999999988887532 22237999999999987 57665 334467888888774 4443 24444
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHL 158 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l 158 (270)
... ....+++|++|++++|..+..++... .++++.++..--.+..+ | . ...+++|+.|+++++ ++
T Consensus 152 ~~~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~---~-~~~l~~L~~L~Ls~N-~l 219 (440)
T 3zyj_A 152 PSY-AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------P---N-LTPLIKLDELDLSGN-HL 219 (440)
T ss_dssp CTT-TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------C---C-CTTCSSCCEEECTTS-CC
T ss_pred CHH-HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------c---c-cCCCcccCEEECCCC-cc
Confidence 332 22457888888888887777666432 22222222211011000 0 0 123788999999988 45
Q ss_pred cccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 159 KQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 159 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
..+.. .....+++|++|+++++. ++.+.+.....+++|++|+++++ +++.+. ...+..+++|+.|++++.+
T Consensus 220 ~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 220 SAIRP---GSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLP-HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEECT---TTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCC-TTTTSSCTTCCEEECCSSC
T ss_pred CccCh---hhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccC-hhHhccccCCCEEEcCCCC
Confidence 54432 224458899999999864 55555555677899999999986 565543 3445678899999998854
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=7.8e-12 Score=116.12 Aligned_cols=85 Identities=22% Similarity=0.359 Sum_probs=39.4
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|+++++.++. +|.++. .+++|++|+++++ .++.+.+ ..++.+++|++| +++++.-...+.
T Consensus 277 l~~L~~L~l~~n~l~~------lp~~l~-~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L-----~l~~n~~~~~~~ 342 (606)
T 3t6q_A 277 FSGLQELDLTATHLSE------LPSGLV-GLSTLKKLVLSAN-KFENLCQ-ISASNFPSLTHL-----SIKGNTKRLELG 342 (606)
T ss_dssp CTTCSEEECTTSCCSC------CCSSCC-SCTTCCEEECTTC-CCSBGGG-GCGGGCTTCSEE-----ECCSCSSCCBCC
T ss_pred ccCCCEEeccCCccCC------CChhhc-ccccCCEEECccC-CcCcCch-hhhhccCcCCEE-----ECCCCCcccccc
Confidence 4555555555555543 333333 5566666666554 2333322 224455555554 344432211111
Q ss_pred CCccccCCCcccEEEeccCC
Q 038160 83 PGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~ 102 (270)
.. ....+++|++|+++++.
T Consensus 343 ~~-~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 343 TG-CLENLENLRELDLSHDD 361 (606)
T ss_dssp SS-TTTTCTTCCEEECCSSC
T ss_pred hh-hhhccCcCCEEECCCCc
Confidence 11 12346667777766663
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.40 E-value=5.5e-12 Score=109.14 Aligned_cols=232 Identities=15% Similarity=0.108 Sum_probs=128.7
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeE-------Eecc
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTL-------RLQG 74 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L-------~L~~ 74 (270)
.+++|++|+++++.++.+ |. +. .+++|++|++++|. +..+.+ ++.+++|++|++..- .+.+
T Consensus 86 ~l~~L~~L~L~~n~i~~~------~~-~~-~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~ 153 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDI------SA-LQ-NLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLSPLSN 153 (347)
T ss_dssp TCTTCCEEECCSSCCCCC------GG-GT-TCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTT
T ss_pred cCCcCCEEEccCCcccCc------hH-Hc-CCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccccchhh
Confidence 467788888877766653 21 22 67777777777653 444322 456666666541100 0111
Q ss_pred CCCcceecCCc-------cccCCCcccEEEeccCCCceeeccc-ccccccCCCCCCCCC---------CCCCCCccccc-
Q 038160 75 LPKLRCLYPGM-------HTSEWPALEILSVHRCDKLKIFTED-LSQNNENDQLGIPAQ---------QPPLPLEKEGC- 136 (270)
Q Consensus 75 ~~~L~~~~~~~-------~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~~~~~~~~~~---------~~l~~~~~~~c- 136 (270)
+++|+.+.... ....+++|++|++++|. ++.++.. ..+.++.+......+ ..+..++-..|
T Consensus 154 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK 232 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc
Confidence 22222222111 02346777777777773 3333311 112222221110000 01111000001
Q ss_pred cccC--cCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCccc
Q 038160 137 LEKH--LGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHL 214 (270)
Q Consensus 137 ~e~~--~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l 214 (270)
+.+. ...+++|+.|+++++ ++..+ .....+++|++|++++|. ++.+ +. ...+++|++|++++|. +...
T Consensus 233 l~~~~~~~~l~~L~~L~l~~n-~l~~~-----~~~~~l~~L~~L~l~~n~-l~~~-~~-~~~l~~L~~L~L~~n~-l~~~ 302 (347)
T 4fmz_A 233 ITDLSPLANLSQLTWLEIGTN-QISDI-----NAVKDLTKLKMLNVGSNQ-ISDI-SV-LNNLSQLNSLFLNNNQ-LGNE 302 (347)
T ss_dssp CCCCGGGTTCTTCCEEECCSS-CCCCC-----GGGTTCTTCCEEECCSSC-CCCC-GG-GGGCTTCSEEECCSSC-CCGG
T ss_pred cCCCcchhcCCCCCEEECCCC-ccCCC-----hhHhcCCCcCEEEccCCc-cCCC-hh-hcCCCCCCEEECcCCc-CCCc
Confidence 1111 234889999999998 44443 123468999999999984 4443 22 5678999999999985 4443
Q ss_pred CChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 215 VTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 215 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
....+..+++|+.|++++|+ +.++. +...+++|++|++.+++
T Consensus 303 -~~~~l~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 303 -DMEVIGGLTNLTTLFLSQNH-ITDIR---------PLASLSKMDSADFANQV 344 (347)
T ss_dssp -GHHHHHTCTTCSEEECCSSS-CCCCG---------GGGGCTTCSEESSSCC-
T ss_pred -ChhHhhccccCCEEEccCCc-ccccc---------Chhhhhccceeehhhhc
Confidence 23456789999999999996 54442 12258999999999875
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.40 E-value=5e-12 Score=113.32 Aligned_cols=110 Identities=12% Similarity=-0.036 Sum_probs=66.7
Q ss_pred CCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhh
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 222 (270)
.+++|+.|+++++. +..+.. .....+++|++|+++++. ++.+.+.....+++|++|+++++ +++.+.. ..+..
T Consensus 297 ~l~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~ 369 (455)
T 3v47_A 297 HFTDLEQLTLAQNE-INKIDD---NAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN-HIRALGD-QSFLG 369 (455)
T ss_dssp TCTTCCEEECTTSC-CCEECT---TTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSS-CCCEECT-TTTTT
T ss_pred cCCCCCEEECCCCc-ccccCh---hHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCC-cccccCh-hhccc
Confidence 36777777777763 332211 123346788888888764 44444444566788888888876 3444432 34466
Q ss_pred ccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 223 LVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 223 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
+++|+.|+++++. +.++.. .....+++|++|++.+.|
T Consensus 370 l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 370 LPNLKELALDTNQ-LKSVPD-------GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CTTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred cccccEEECCCCc-cccCCH-------hHhccCCcccEEEccCCC
Confidence 7888888888873 444321 011246788888887653
No 17
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.39 E-value=3.5e-12 Score=110.88 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=37.1
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++|++|++++++++.+.. ..+ ..+++|++|+++++ .++.+.+ ..++++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~-----~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~ 106 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISN-----SDL-QRCVNLQALVLTSN-GINTIEE-DSFSSLGSLEHLD 106 (353)
T ss_dssp CTTCCEEECTTSCCCEECT-----TTT-TTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcCcccCH-----HHh-ccCCCCCEEECCCC-ccCccCH-hhcCCCCCCCEEE
Confidence 3578888888877776422 122 27888888888876 5665533 3366777777775
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.39 E-value=1.3e-11 Score=108.64 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=48.7
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCcc
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEK 250 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 250 (270)
.+++|++|+++++. ++...+.....+++|++|+++++ +++.+. .....+++|+.|++++|. +.++. .
T Consensus 246 ~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n~-l~~~~--------~ 312 (390)
T 3o6n_A 246 NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNH-LLHVE--------R 312 (390)
T ss_dssp GCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSS-CCCEEE--CSSSCCTTCCEEECCSSC-CCCCG--------G
T ss_pred CCCCccEEECCCCc-CCCcChhHccccccCCEEECCCC-cCcccC--cccCCCCCCCEEECCCCc-ceecC--------c
Confidence 46677777777653 33333443556677777777765 344432 123456777777777773 44331 1
Q ss_pred ceeecCccCeeecCCCC
Q 038160 251 EEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 251 ~~~~~~~L~~L~l~~~~ 267 (270)
....+++|++|++.+++
T Consensus 313 ~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNS 329 (390)
T ss_dssp GHHHHTTCSEEECCSSC
T ss_pred cccccCcCCEEECCCCc
Confidence 12246788888877653
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=2.2e-11 Score=109.93 Aligned_cols=233 Identities=18% Similarity=0.161 Sum_probs=114.4
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeee-----E---Eec
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTT-----L---RLQ 73 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~-----L---~L~ 73 (270)
.+++|++|+|++++++. +|...+..+++|++|+++++ .+..+.+ ..++.+++|++|++.. + .+.
T Consensus 78 ~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 149 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKL------IPLGVFTGLSNLTKLDISEN-KIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFS 149 (477)
T ss_dssp TCTTCCEEECCSSCCCS------CCTTSSTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSST
T ss_pred CCccCCEEECCCCcCCc------cCcccccCCCCCCEEECCCC-ccccCCh-hHccccccCCEEECCCCccceeChhhcc
Confidence 46788999998877775 33333336788888888876 3444422 3356777777776211 1 122
Q ss_pred cCCCcceecCCc---------cccCCCcccEEEeccCCCceeecccc---cccccCCCCCC-CCCCCCCCCccccccccC
Q 038160 74 GLPKLRCLYPGM---------HTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGI-PAQQPPLPLEKEGCLEKH 140 (270)
Q Consensus 74 ~~~~L~~~~~~~---------~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~-~~~~~l~~~~~~~c~e~~ 140 (270)
++++|+.+.... ....+++|+.|+++++. ++.++... .+.++.++..- ..... +...
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~---------~~~~ 219 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDT---------MTPN 219 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCE---------ECTT
T ss_pred CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccc---------cCcc
Confidence 233333322211 01245666666666653 33332111 01111111000 00000 0000
Q ss_pred cCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHH
Q 038160 141 LGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTA 220 (270)
Q Consensus 141 ~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~ 220 (270)
.....+|++|+++++ +++.+.. .....+++|++|+++++. ++.+.+.....+++|++|++.++ ++..+. +..+
T Consensus 220 ~~~~~~L~~L~l~~n-~l~~~~~---~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~ 292 (477)
T 2id5_A 220 CLYGLNLTSLSITHC-NLTAVPY---LAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVE-PYAF 292 (477)
T ss_dssp TTTTCCCSEEEEESS-CCCSCCH---HHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEEC-TTTB
T ss_pred cccCccccEEECcCC-cccccCH---HHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceEC-HHHh
Confidence 001335666666665 3333211 112346677777777654 44444444556677777777765 344432 2234
Q ss_pred hhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 221 KTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 221 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
..+++|+.|+++++. +..+.. .....+++|+.|++.+.|
T Consensus 293 ~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQ-LTTLEE-------SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCTTCCEEECCSSC-CSCCCG-------GGBSCGGGCCEEECCSSC
T ss_pred cCcccCCEEECCCCc-CceeCH-------hHcCCCcccCEEEccCCC
Confidence 566777777777773 443310 111245677777776543
No 20
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.37 E-value=6.4e-12 Score=113.25 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=53.5
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE-----eeeEEeccCC
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE-----LTTLRLQGLP 76 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~-----L~~L~L~~~~ 76 (270)
.+++|++|++++++++.+ |.+ .+++|++|+++++. ++.+ + ++++++|++|+ ++.+.+.+++
T Consensus 62 ~l~~L~~L~Ls~n~l~~~------~~~---~l~~L~~L~Ls~N~-l~~~-~---~~~l~~L~~L~L~~N~l~~l~~~~l~ 127 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL------DLS---QNTNLTYLACDSNK-LTNL-D---VTPLTKLTYLNCDTNKLTKLDVSQNP 127 (457)
T ss_dssp GCTTCSEEECCSSCCSCC------CCT---TCTTCSEEECCSSC-CSCC-C---CTTCTTCCEEECCSSCCSCCCCTTCT
T ss_pred ccCCCCEEEccCCcCCeE------ccc---cCCCCCEEECcCCC-Ccee-e---cCCCCcCCEEECCCCcCCeecCCCCC
Confidence 467888888888777653 322 67778888887763 5544 2 56677777776 2233344444
Q ss_pred CcceecCCc------cccCCCcccEEEeccCCCceee
Q 038160 77 KLRCLYPGM------HTSEWPALEILSVHRCDKLKIF 107 (270)
Q Consensus 77 ~L~~~~~~~------~~~~~~~L~~L~i~~c~~l~~~ 107 (270)
+|+.+.... ....+++|++|++++|..+..+
T Consensus 128 ~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 128 LLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp TCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC
T ss_pred cCCEEECCCCccceeccccCCcCCEEECCCCCccccc
Confidence 554443322 1224566777777666544443
No 21
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.37 E-value=1.4e-11 Score=104.90 Aligned_cols=226 Identities=19% Similarity=0.152 Sum_probs=125.4
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCC-chhhccccccceeEeeeEEeccCCCccee
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFS-ASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.++|++|++++++++. +|.+++..+++|++|+++++ .++.... +..+..+++|++|+ +++. .++.+
T Consensus 27 ~~~l~~L~L~~n~l~~------i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~-----Ls~n-~i~~l 93 (306)
T 2z66_A 27 PSSATRLELESNKLQS------LPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLD-----LSFN-GVITM 93 (306)
T ss_dssp CTTCCEEECCSSCCCC------CCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEE-----CCSC-SEEEE
T ss_pred CCCCCEEECCCCccCc------cCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEE-----CCCC-ccccC
Confidence 3578999998887775 34443337899999999886 3443210 12245677777775 3333 12222
Q ss_pred cCCccccCCCcccEEEeccCCCceeecc-cc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTE-DL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYH 157 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~ 157 (270)
... ...+++|++|+++++. ++.++. .. .+.++.++...-.+... ..+....+++|+.|+++++.
T Consensus 94 ~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~- 161 (306)
T 2z66_A 94 SSN--FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVA--------FNGIFNGLSSLEVLKMAGNS- 161 (306)
T ss_dssp EEE--EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEEC--------STTTTTTCTTCCEEECTTCE-
T ss_pred hhh--cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCcc--------chhhcccCcCCCEEECCCCc-
Confidence 211 2346667777766652 333321 00 11111111100000000 00112237888999988874
Q ss_pred ccc-cccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCC
Q 038160 158 LKQ-LCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRA 236 (270)
Q Consensus 158 l~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~ 236 (270)
+.. .. ......+++|++|+++++. ++.+.+.....+++|++|+++++. ++.+.. ..+..+++|+.|+++++.
T Consensus 162 l~~~~~---~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~- 234 (306)
T 2z66_A 162 FQENFL---PDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN-FFSLDT-FPYKCLNSLQVLDYSLNH- 234 (306)
T ss_dssp EGGGEE---CSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CSBCCS-GGGTTCTTCCEEECTTSC-
T ss_pred cccccc---hhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCc-cCccCh-hhccCcccCCEeECCCCC-
Confidence 222 11 1223457889999999874 555545556678899999998764 444432 235678899999999984
Q ss_pred cceEeeccCCCCccceeec-CccCeeecCCCC
Q 038160 237 MTEVVINDKDGVEKEEIVF-CKLKTLQLFDLD 267 (270)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 267 (270)
+..... .....+ ++|++|++.+.+
T Consensus 235 l~~~~~-------~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 235 IMTSKK-------QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCBCSS-------SSCCCCCTTCCEEECTTCC
T ss_pred CcccCH-------HHHHhhhccCCEEEccCCC
Confidence 333211 111134 488888887754
No 22
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.37 E-value=1.1e-11 Score=107.67 Aligned_cols=221 Identities=15% Similarity=0.097 Sum_probs=126.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.+++++|+|++++++.+ |.+.+..+++|++|+++++.-++.+ +...+.++++++++ ...+..+++.+.
T Consensus 29 ~~~l~~L~Ls~N~i~~i------~~~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~-----l~~~~N~l~~l~ 96 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVI------QKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEI-----RIEKANNLLYIN 96 (350)
T ss_dssp CTTCSEEEEESCCCSEE------CTTSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEE-----EEEEETTCCEEC
T ss_pred CCCCCEEEccCCcCCCc------CHHHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhh-----hcccCCcccccC
Confidence 35799999999988874 4444347899999999998655444 44446677776654 234455677665
Q ss_pred CCccccCCCcccEEEeccCCCceeecccc-cc--cccCCCC-CCCCCCCCCCCccccccccCcCC-CCCCCEEEecCccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDL-SQ--NNENDQL-GIPAQQPPLPLEKEGCLEKHLGK-LAMIKELKLYRPYH 157 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~--~~~~~~~-~~~~~~~l~~~~~~~c~e~~~~~-~~~L~~L~i~~c~~ 157 (270)
++. ...+++|++|+++++. ++.++... .. ....+.. +...+..+. .+.... ...++.|++++. +
T Consensus 97 ~~~-f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~--------~~~f~~~~~~l~~L~L~~N-~ 165 (350)
T 4ay9_X 97 PEA-FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIE--------RNSFVGLSFESVILWLNKN-G 165 (350)
T ss_dssp TTS-BCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEEC--------TTSSTTSBSSCEEEECCSS-C
T ss_pred chh-hhhccccccccccccc-cccCCchhhcccchhhhhhhcccccccccc--------ccchhhcchhhhhhccccc-c
Confidence 543 2457889999998874 44444211 00 0000000 000000000 000011 234666776665 3
Q ss_pred ccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCc
Q 038160 158 LKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAM 237 (270)
Q Consensus 158 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l 237 (270)
++.+... .....+|+++.+.++..++.+++..+..+++|++|+++++ +++.+.. ..+.+|+.|.+.++.++
T Consensus 166 i~~i~~~----~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 166 IQEIHNS----AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS----YGLENLKKLRARSTYNL 236 (350)
T ss_dssp CCEECTT----SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS----SSCTTCCEEECTTCTTC
T ss_pred ccCCChh----hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh----hhhccchHhhhccCCCc
Confidence 4443221 1234567778777777777776554566778888888765 4655432 23556777777777777
Q ss_pred ceEeeccCCCCccceeecCccCeeecC
Q 038160 238 TEVVINDKDGVEKEEIVFCKLKTLQLF 264 (270)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~L~~L~l~ 264 (270)
+++..- ..+++|+.+++.
T Consensus 237 ~~lP~l---------~~l~~L~~l~l~ 254 (350)
T 4ay9_X 237 KKLPTL---------EKLVALMEASLT 254 (350)
T ss_dssp CCCCCT---------TTCCSCCEEECS
T ss_pred CcCCCc---------hhCcChhhCcCC
Confidence 666321 136677777664
No 23
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.36 E-value=1.2e-11 Score=101.49 Aligned_cols=180 Identities=16% Similarity=0.154 Sum_probs=126.1
Q ss_pred CCCCccEEEEeccc-cceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcce
Q 038160 2 ALPNLEALEISAIN-VDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRC 80 (270)
Q Consensus 2 ~~~~L~~L~l~~~~-l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~ 80 (270)
.+++|++|++++++ ++.+. ...+..+++|++|++.+|..++.++ ...++++++|++|++..-.+...+.
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~------~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~lp~--- 122 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLE------SHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKMFPD--- 122 (239)
T ss_dssp TCTTCCEEEEECCSSCCEEC------TTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCSCCC---
T ss_pred CCCCCcEEeCCCCCCcceeC------HhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCccccc---
Confidence 47899999999975 87743 2222379999999999987888774 3346789999988765554444432
Q ss_pred ecCCccccCCCccc---EEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCC-EEEecCcc
Q 038160 81 LYPGMHTSEWPALE---ILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIK-ELKLYRPY 156 (270)
Q Consensus 81 ~~~~~~~~~~~~L~---~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~-~L~i~~c~ 156 (270)
...+++|+ .|++++++.++.++... ...+++|+ .|+++++
T Consensus 123 ------~~~l~~L~~L~~L~l~~N~~l~~i~~~~-----------------------------~~~l~~L~~~L~l~~n- 166 (239)
T 2xwt_C 123 ------LTKVYSTDIFFILEITDNPYMTSIPVNA-----------------------------FQGLCNETLTLKLYNN- 166 (239)
T ss_dssp ------CTTCCBCCSEEEEEEESCTTCCEECTTT-----------------------------TTTTBSSEEEEECCSC-
T ss_pred ------cccccccccccEEECCCCcchhhcCccc-----------------------------ccchhcceeEEEcCCC-
Confidence 13455666 99999997787776210 12277899 9999887
Q ss_pred cccccccccccccccccccceEEEecCcchhhhcCCCcccC-cCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 157 HLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSF-RNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 157 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
+++.+... ... .++|++|+++++..++.+++.....+ ++|++|+++++ +++.+.. ..+++|+.|++.++.
T Consensus 167 ~l~~i~~~---~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 167 GFTSVQGY---AFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp CCCEECTT---TTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTTC-
T ss_pred CCcccCHh---hcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCCh----hHhccCceeeccCcc
Confidence 45543221 112 37899999999876777766656677 99999999984 5655432 257889999998876
Q ss_pred C
Q 038160 236 A 236 (270)
Q Consensus 236 ~ 236 (270)
.
T Consensus 238 ~ 238 (239)
T 2xwt_C 238 T 238 (239)
T ss_dssp -
T ss_pred C
Confidence 4
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.36 E-value=2.1e-11 Score=109.31 Aligned_cols=85 Identities=18% Similarity=0.052 Sum_probs=48.5
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCcc
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEK 250 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 250 (270)
.+++|++|+++++. ++.+.+.....+++|++|+++++ ++..+ .+..+..+++|+.|+++++. +..+.. .
T Consensus 297 ~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~-------~ 365 (455)
T 3v47_A 297 HFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQN-FLGSI-DSRMFENLDKLEVLDLSYNH-IRALGD-------Q 365 (455)
T ss_dssp TCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEE-CGGGGTTCTTCCEEECCSSC-CCEECT-------T
T ss_pred cCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCC-ccCCc-ChhHhcCcccCCEEECCCCc-ccccCh-------h
Confidence 35666677666653 33333433556677777777765 33333 22344667777777777773 443321 1
Q ss_pred ceeecCccCeeecCCC
Q 038160 251 EEIVFCKLKTLQLFDL 266 (270)
Q Consensus 251 ~~~~~~~L~~L~l~~~ 266 (270)
....+++|++|++.+.
T Consensus 366 ~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 366 SFLGLPNLKELALDTN 381 (455)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred hccccccccEEECCCC
Confidence 1124678888887764
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=7.4e-12 Score=116.26 Aligned_cols=224 Identities=17% Similarity=0.051 Sum_probs=127.0
Q ss_pred CCCCccEEEEecc-ccceecccccccCcccCcCCCccEEEEecCcCccccC-CchhhccccccceeEeeeEEeccCCCcc
Q 038160 2 ALPNLEALEISAI-NVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIF-SASMIGNLKQLQHLELTTLRLQGLPKLR 79 (270)
Q Consensus 2 ~~~~L~~L~l~~~-~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~L~~L~L~~~~~L~ 79 (270)
.+++|++|+++++ ....+ +.. .+++|++|+++++ .++... .+..++.+++|++| +++++. ++
T Consensus 326 ~l~~L~~L~l~~n~~~~~~------~~~---~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L-----~L~~n~-l~ 389 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF------KKV---ALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHL-----DLSFNG-AI 389 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC------CCC---CCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEE-----ECCSCS-EE
T ss_pred CCCccceeeccCCcCccch------hhc---cCCCCCEEECcCC-ccCCCcchhhhhccCCcccEe-----ECCCCc-cc
Confidence 4688999999885 44332 222 7899999999887 344432 13336778887777 444443 33
Q ss_pred eecCCccccCCCcccEEEeccCCCceeecc-cc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCc
Q 038160 80 CLYPGMHTSEWPALEILSVHRCDKLKIFTE-DL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRP 155 (270)
Q Consensus 80 ~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c 155 (270)
.++ .....+++|++|++++|. +...+. .. .+.++.++...-.+... ..+....+++|+.|+++++
T Consensus 390 ~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 390 IMS--ANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKID--------FDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EEC--CCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEEC--------CTTTTTTCTTCCEEECTTC
T ss_pred cch--hhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCcc--------chhhhcCCCCCCEEECCCC
Confidence 333 122356677777777763 222211 00 11111111100000000 0011223778888888888
Q ss_pred ccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 156 YHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 156 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.--..+. ......+++|++|++++|. ++...+.....+++|++|++++| ++.... +..+..+++|+.|++++|.
T Consensus 459 ~l~~~~~---~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 459 SFKDNTL---SNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHN-NLLFLD-SSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EEGGGEE---CSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCEE-GGGTTTCTTCCEEECTTSC
T ss_pred cCCCcch---HHhhccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCC-cCCCcC-HHHccCCCcCCEEECCCCc
Confidence 4222111 1223457889999998874 44554555667888999999887 444442 3445678889999998885
Q ss_pred CcceEeeccCCCCccceeecC-ccCeeecCCCC
Q 038160 236 AMTEVVINDKDGVEKEEIVFC-KLKTLQLFDLD 267 (270)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 267 (270)
+..+.. ....++ +|++|++.+.|
T Consensus 533 -l~~~p~--------~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 533 -IETSKG--------ILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp -CCCEES--------CGGGSCTTCCEEECCSCC
T ss_pred -CcccCH--------hHhhhcccCcEEEccCCC
Confidence 555531 112355 58888887754
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=3.5e-11 Score=111.88 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=52.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|+++++.+..+.. ..+. .+++|++|+++++. +..++ +..++++++|++| +++++ .++.++
T Consensus 74 l~~L~~L~L~~n~l~~~~~-----~~~~-~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L-----~L~~n-~l~~l~ 139 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDT-----YAFA-YAHTIQKLYMGFNA-IRYLP-PHVFQNVPLLTVL-----VLERN-DLSSLP 139 (597)
T ss_dssp CCCCSEEECTTSCCCEECT-----TTTT-TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEE-----ECCSS-CCCCCC
T ss_pred CCCCcEEECCCCCCCCCCh-----HHhc-CCCCCCEEECCCCc-CCCCC-HHHHcCCCCCCEE-----EeeCC-CCCCCC
Confidence 4666666666666655321 1222 66777777777653 55543 2335666666665 45554 344443
Q ss_pred CCccccCCCcccEEEeccCCCceeec
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
... ...+++|++|++++|. ++.++
T Consensus 140 ~~~-~~~l~~L~~L~Ls~N~-l~~~~ 163 (597)
T 3oja_B 140 RGI-FHNTPKLTTLSMSNNN-LERIE 163 (597)
T ss_dssp TTT-TTTCTTCCEEECCSSC-CCBCC
T ss_pred HHH-hccCCCCCEEEeeCCc-CCCCC
Confidence 321 2468899999999984 55444
No 27
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.34 E-value=8.9e-12 Score=106.84 Aligned_cols=216 Identities=16% Similarity=0.099 Sum_probs=117.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++++++++.+. |..+. .+++|++|+++++ .+....+ ++.+++|++|+ ++++ +++.+.
T Consensus 33 ~~~L~~L~L~~n~l~~~~-----~~~~~-~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~-----Ls~n-~l~~l~ 96 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQIS-----AADLA-PFTKLELLNLSSN-VLYETLD---LESLSTLRTLD-----LNNN-YVQELL 96 (317)
T ss_dssp GGGCSEEECTTSCCCCCC-----HHHHT-TCTTCCEEECTTS-CCEEEEE---ETTCTTCCEEE-----CCSS-EEEEEE
T ss_pred CCCCCEEECcCCccCcCC-----HHHhh-CCCcCCEEECCCC-cCCcchh---hhhcCCCCEEE-----CcCC-cccccc
Confidence 467888888887777642 12222 7888888888876 3444433 56777777775 3222 122221
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
..++|++|+++++. ++.++....+.++.++..--.+..+. ......+++|+.|+++++ ++..+.
T Consensus 97 ------~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~--------~~~~~~l~~L~~L~Ls~N-~l~~~~ 160 (317)
T 3o53_A 97 ------VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLR--------DLDEGCRSRVQYLDLKLN-EIDTVN 160 (317)
T ss_dssp ------ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGG--------GBCTGGGSSEEEEECTTS-CCCEEE
T ss_pred ------CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCcc--------chhhhccCCCCEEECCCC-CCCccc
Confidence 12455555555552 33332211112222111000000000 001122678888888887 344332
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEee
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVI 242 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 242 (270)
.. .....+++|++|+++++. ++.+.. ...+++|++|+++++ +++.+.. .+..+++|+.|+++++ .+.++..
T Consensus 161 ~~--~~~~~l~~L~~L~L~~N~-l~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 161 FA--ELAASSDTLEHLNLQYNF-IYDVKG--QVVFAKLKTLDLSSN-KLAFMGP--EFQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp GG--GGGGGTTTCCEEECTTSC-CCEEEC--CCCCTTCCEEECCSS-CCCEECG--GGGGGTTCSEEECTTS-CCCEECT
T ss_pred HH--HHhhccCcCCEEECCCCc-Cccccc--ccccccCCEEECCCC-cCCcchh--hhcccCcccEEECcCC-cccchhh
Confidence 11 112346888888888865 444422 234788899988876 4555432 2567888999999888 4555521
Q ss_pred ccCCCCccceeecCccCeeecCCCC
Q 038160 243 NDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 243 ~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
....+++|+.|++.+.+
T Consensus 232 --------~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 232 --------ALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp --------TCCCCTTCCEEECTTCC
T ss_pred --------HhhcCCCCCEEEccCCC
Confidence 12246788888887754
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.33 E-value=4.6e-11 Score=102.72 Aligned_cols=210 Identities=13% Similarity=0.087 Sum_probs=109.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccC-----CC
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGL-----PK 77 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~-----~~ 77 (270)
.++|++|++++++++.+.. ..+. .+++|++|+++++ .++.+.+ ..++.+++|++|++..-.+... ++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~-----~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~ 122 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKD-----GDFK-NLKNLHTLILINN-KISKISP-GAFAPLVKLERLYLSKNQLKELPEKMPKT 122 (330)
T ss_dssp CTTCCEEECCSSCCCCBCT-----TTTT-TCTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEECCSSCCSBCCSSCCTT
T ss_pred CCCCeEEECCCCcCCEeCh-----hhhc-cCCCCCEEECCCC-cCCeeCH-HHhcCCCCCCEEECCCCcCCccChhhccc
Confidence 4678999999988876422 1232 7899999999887 4555533 3367888888886222111111 22
Q ss_pred cceecCCc---------cccCCCcccEEEeccCCCce--eeccc--ccccccCCCCCCCCCCCCCCCccccccccCcCCC
Q 038160 78 LRCLYPGM---------HTSEWPALEILSVHRCDKLK--IFTED--LSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKL 144 (270)
Q Consensus 78 L~~~~~~~---------~~~~~~~L~~L~i~~c~~l~--~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~ 144 (270)
|+.+.... ....+++|+.|+++++.--. ..+.. ..+.++.++..--.+..+ | ....
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l------~-----~~~~ 191 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI------P-----QGLP 191 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC------C-----SSCC
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC------C-----cccc
Confidence 22222211 11346777777777764211 11100 011222221110000000 0 0114
Q ss_pred CCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhcc
Q 038160 145 AMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLV 224 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~ 224 (270)
++|+.|+++++. +..+.. .....+++|++|+++++. ++...+.....+++|++|+++++ ++..+ +..+..++
T Consensus 192 ~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l--p~~l~~l~ 263 (330)
T 1xku_A 192 PSLTELHLDGNK-ITKVDA---ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKV--PGGLADHK 263 (330)
T ss_dssp TTCSEEECTTSC-CCEECT---GGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSC--CTTTTTCS
T ss_pred ccCCEEECCCCc-CCccCH---HHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccC--ChhhccCC
Confidence 677777777763 333211 123346777888877754 44444433556777888888776 34433 22345677
Q ss_pred CCcEEEEecCCCcceE
Q 038160 225 RLVKVQVYGCRAMTEV 240 (270)
Q Consensus 225 ~L~~L~i~~c~~l~~~ 240 (270)
+|+.|+++++. +.++
T Consensus 264 ~L~~L~l~~N~-i~~~ 278 (330)
T 1xku_A 264 YIQVVYLHNNN-ISAI 278 (330)
T ss_dssp SCCEEECCSSC-CCCC
T ss_pred CcCEEECCCCc-CCcc
Confidence 78888877773 4433
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.33 E-value=6.3e-11 Score=110.02 Aligned_cols=231 Identities=16% Similarity=0.086 Sum_probs=138.3
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEee------eEEeccC
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELT------TLRLQGL 75 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~------~L~L~~~ 75 (270)
.+++|++|++.++.+.. +| .+. .+++|++|++++|.- +.++ . + .+++|++|++. ...+.++
T Consensus 283 ~l~~L~~L~l~~~~~~~------l~-~l~-~~~~L~~L~l~~n~l-~~lp-~--~-~l~~L~~L~l~~n~~~~~~~~~~l 349 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKY------LE-DVP-KHFKWQSLSIIRCQL-KQFP-T--L-DLPFLKSLTLTMNKGSISFKKVAL 349 (606)
T ss_dssp GGTTCSEEEEESCCCCC------CC-CCC-TTCCCSEEEEESCCC-SSCC-C--C-CCSSCCEEEEESCSSCEECCCCCC
T ss_pred cCCCCCEEEecCccchh------hh-hcc-ccccCCEEEcccccC-cccc-c--C-CCCccceeeccCCcCccchhhccC
Confidence 36788999998877765 33 222 788888888888854 5553 2 3 67777776522 1122233
Q ss_pred CCcceecCCc-----------cccCCCcccEEEeccCCCceeecccc--cccccCCCCCCCCCCCCCCCccccccccCcC
Q 038160 76 PKLRCLYPGM-----------HTSEWPALEILSVHRCDKLKIFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLG 142 (270)
Q Consensus 76 ~~L~~~~~~~-----------~~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~ 142 (270)
++|+.+.... ....+++|++|++++|. ++.++... .+.++.++..--.+..... .....
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~ 421 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTE-------FSAFL 421 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTT-------TTTTT
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccC-------hhhhh
Confidence 4444433321 12356788888888875 55554211 1222222211000000000 01122
Q ss_pred CCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhh
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 222 (270)
.+++|+.|+++++. +..... .....+++|++|++++|.-.....+.....+++|++|++++| +++... +..+..
T Consensus 422 ~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~ 495 (606)
T 3vq2_A 422 SLEKLLYLDISYTN-TKIDFD---GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQIS-WGVFDT 495 (606)
T ss_dssp TCTTCCEEECTTSC-CEECCT---TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTT
T ss_pred ccccCCEEECcCCC-CCccch---hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccC-hhhhcc
Confidence 38899999999985 332221 223458999999999986554444655778999999999988 455543 344578
Q ss_pred ccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 223 LVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 223 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
+++|+.|++++|. +.++.. .....+++|++|++.++.
T Consensus 496 l~~L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 496 LHRLQLLNMSHNN-LLFLDS-------SHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CTTCCEEECCSSC-CSCEEG-------GGTTTCTTCCEEECTTSC
T ss_pred cccCCEEECCCCc-CCCcCH-------HHccCCCcCCEEECCCCc
Confidence 8999999999994 554421 111247889999988764
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.32 E-value=1.5e-11 Score=117.56 Aligned_cols=109 Identities=17% Similarity=0.032 Sum_probs=63.8
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|+++++. +..... .....+++|++|++++|.-... .|.....+++|++|++++|. +... .+..++.+
T Consensus 441 l~~L~~L~L~~n~-l~~~~p---~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~-l~~~-~p~~~~~l 513 (768)
T 3rgz_A 441 LSKLRDLKLWLNM-LEGEIP---QELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNR-LTGE-IPKWIGRL 513 (768)
T ss_dssp CTTCCEEECCSSC-CCSCCC---GGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSC-CCSC-CCGGGGGC
T ss_pred CCCCCEEECCCCc-ccCcCC---HHHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEEEccCCc-cCCc-CChHHhcC
Confidence 5666777766663 221111 1233467788888877653322 34445667788888888765 3322 23345677
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|+.|++++|.-...+ +.....+++|+.|++.+++
T Consensus 514 ~~L~~L~L~~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNI--------PAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp TTCCEEECCSSCCEEEC--------CGGGGGCTTCCEEECCSSE
T ss_pred CCCCEEECCCCcccCcC--------CHHHcCCCCCCEEECCCCc
Confidence 88888888888522222 1122257888888887763
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.31 E-value=3.6e-11 Score=111.61 Aligned_cols=237 Identities=19% Similarity=0.169 Sum_probs=133.8
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEe-----eeEE-----
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLEL-----TTLR----- 71 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L-----~~L~----- 71 (270)
.+++|++|+++++.++.+. |..+. .+++|++|+++++.....+ +...++.+++|++|++ ....
T Consensus 299 ~l~~L~~L~l~~n~l~~~~-----~~~~~-~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLC-----QISAS-NFPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp SCTTCCEEECTTCCCSBGG-----GGCGG-GCTTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred ccccCCEEECccCCcCcCc-----hhhhh-ccCcCCEEECCCCCccccc-chhhhhccCcCCEEECCCCccccccCcchh
Confidence 4688999999998777532 23333 7888999998887543333 4444677888887762 2222
Q ss_pred eccCCCcceecCCc---------cccCCCcccEEEeccCCCceee-cccc---cccccCCCCCCCCCCCCCCCccccccc
Q 038160 72 LQGLPKLRCLYPGM---------HTSEWPALEILSVHRCDKLKIF-TEDL---SQNNENDQLGIPAQQPPLPLEKEGCLE 138 (270)
Q Consensus 72 L~~~~~L~~~~~~~---------~~~~~~~L~~L~i~~c~~l~~~-~~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e 138 (270)
+.++++|+.+.... ....+++|++|+++++. ++.. +... .+.++.++...-.+... ..
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~ 442 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDIS--------SE 442 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTT--------CT
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCc--------CH
Confidence 33445554443321 12346788888888874 3322 1110 11222222110000000 00
Q ss_pred cCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChh
Q 038160 139 KHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSS 218 (270)
Q Consensus 139 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 218 (270)
.....+++|++|+++++. +.............+++|++|++++|. ++.+.+.....+++|++|+++++ ++.... +.
T Consensus 443 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~ 518 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHN-RLTSSS-IE 518 (606)
T ss_dssp TTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCGGG-GG
T ss_pred HHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCC-ccCcCC-hh
Confidence 112237888888888884 222100001223457888888888874 45554555677888888888877 344432 33
Q ss_pred HHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 219 TAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 219 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.+..+++| .|+++++. +..+. +.....+++|+.|++.+.|
T Consensus 519 ~l~~l~~L-~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 519 ALSHLKGI-YLNLASNH-ISIIL-------PSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp GGTTCCSC-EEECCSSC-CCCCC-------GGGHHHHHTSSEEECTTCC
T ss_pred HhCccccc-EEECcCCc-ccccC-------HhhcccCCCCCEEeCCCCC
Confidence 45677778 88888884 33321 1112257888898888765
No 32
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.29 E-value=5.3e-13 Score=123.53 Aligned_cols=89 Identities=20% Similarity=0.126 Sum_probs=48.4
Q ss_pred CCCCCEEEecCccc-ccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhh
Q 038160 144 LAMIKELKLYRPYH-LKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 144 ~~~L~~L~i~~c~~-l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 222 (270)
+++|+.|+++.|.+ +..... ......+++|++|++++|.--..-.+.....+++|++|++++|+ +.+......+..
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 511 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGL--SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK 511 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHH--HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCCccHHHH--HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence 66677777766554 111100 01122356777777776642211111223456777777777776 544433444566
Q ss_pred ccCCcEEEEecCC
Q 038160 223 LVRLVKVQVYGCR 235 (270)
Q Consensus 223 l~~L~~L~i~~c~ 235 (270)
+++|+.|++++|.
T Consensus 512 l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 512 LPSLRYLWVQGYR 524 (592)
T ss_dssp CSSCCEEEEESCB
T ss_pred cCccCeeECcCCc
Confidence 7777777777775
No 33
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.29 E-value=5.9e-13 Score=114.69 Aligned_cols=188 Identities=16% Similarity=0.112 Sum_probs=115.1
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.+...+ +|..+. .+++|++|++++|. +....+ ..++.+++|++| +++++..++..
T Consensus 91 ~~~~L~~L~L~~~~l~~~~----~~~~~~-~~~~L~~L~L~~~~-l~~~~~-~~l~~~~~L~~L-----~L~~~~~l~~~ 158 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVST----LHGILS-QCSKLQNLSLEGLR-LSDPIV-NTLAKNSNLVRL-----NLSGCSGFSEF 158 (336)
T ss_dssp CCBCCCEEECTTCEECHHH----HHHHHT-TBCCCSEEECTTCB-CCHHHH-HHHTTCTTCSEE-----ECTTCBSCCHH
T ss_pred cCCCCCEEEccCCCcCHHH----HHHHHh-hCCCCCEEeCcCcc-cCHHHH-HHHhcCCCCCEE-----ECCCCCCCCHH
Confidence 4789999999997665421 222233 79999999999984 543322 235678887776 78888766642
Q ss_pred cCCccccCCCcccEEEeccCCCcee--ecccccccccCCCCCCCCCCCCCCCccccccccCcCCCC-CCCEEEecCcc-c
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKI--FTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLA-MIKELKLYRPY-H 157 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~-~L~~L~i~~c~-~ 157 (270)
........+++|++|++++|++++. ++.. ...++ +|++|++++|. +
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~------------------------------~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVA------------------------------VAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHHHHHHH------------------------------HHHSCTTCCEEECCSCGGG
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChHHHHHH------------------------------HHhcccCCCEEEeCCCccc
Confidence 2212234588999999999976653 1210 11266 77777777775 3
Q ss_pred ccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 158 LKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 158 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
+..... ......+++|++|++++|..+++..+.....+++|++|++++|..+.+... .....+++|+.|++++|
T Consensus 209 ~~~~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 209 LQKSDL--STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCHHHH--HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred CCHHHH--HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 321000 011234677777777777654433333355667777777777765443221 12355777777777777
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=9.8e-11 Score=98.60 Aligned_cols=183 Identities=20% Similarity=0.185 Sum_probs=127.0
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.++.+. |..+. .+++|++|+++++..++.+.+ ..++.+++|++| +++++. ++.+
T Consensus 54 ~~~~L~~L~l~~n~l~~~~-----~~~~~-~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L-----~l~~n~-l~~~ 120 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARID-----AAAFT-GLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTL-----HLDRCG-LQEL 120 (285)
T ss_dssp TCTTCCEEECCSSCCCEEC-----TTTTT-TCTTCCEEECCSCTTCCCCCT-TTTTTCTTCCEE-----ECTTSC-CCCC
T ss_pred cCCCCCEEECCCCccceeC-----HhhcC-CccCCCEEeCCCCCCccccCH-HHhcCCcCCCEE-----ECCCCc-CCEE
Confidence 4789999999998888752 33333 799999999999876776633 346788888877 555542 3333
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQL 161 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~ 161 (270)
... ....+++|++|+++++. ++.++.. ....+++|+.|+++++ +++.+
T Consensus 121 ~~~-~~~~l~~L~~L~l~~n~-l~~~~~~-----------------------------~~~~l~~L~~L~l~~n-~l~~~ 168 (285)
T 1ozn_A 121 GPG-LFRGLAALQYLYLQDNA-LQALPDD-----------------------------TFRDLGNLTHLFLHGN-RISSV 168 (285)
T ss_dssp CTT-TTTTCTTCCEEECCSSC-CCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCEE
T ss_pred CHh-HhhCCcCCCEEECCCCc-ccccCHh-----------------------------HhccCCCccEEECCCC-ccccc
Confidence 222 12458899999999984 4433310 0122788999999987 45443
Q ss_pred ccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 162 CKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.. .....+++|++|+++++. +....+.....+++|++|+++++ +++.+ ....+..+++|+.|++++++
T Consensus 169 ~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 169 PE---RAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSAL-PTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CT---TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCC-CHHHHTTCTTCCEEECCSSC
T ss_pred CH---HHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcC-CHHHcccCcccCEEeccCCC
Confidence 22 123457899999999875 55554555677899999999987 45543 33456788999999999875
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=3.1e-11 Score=109.59 Aligned_cols=216 Identities=16% Similarity=0.110 Sum_probs=123.9
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|+|+++++..+. |..+. .+++|++|++++|. +...++ ++.+++|++|+ ++++ .++.+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~-----~~~~~-~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~-----Ls~N-~l~~l~ 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQIS-----AADLA-PFTKLELLNLSSNV-LYETLD---LESLSTLRTLD-----LNNN-YVQELL 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCC-----GGGGT-TCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEE-----CCSS-EEEEEE
T ss_pred CCCccEEEeeCCcCCCCC-----HHHHh-CCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEE-----ecCC-cCCCCC
Confidence 468999999998887642 22333 78999999998874 555433 67888888775 3333 223222
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
. .++|+.|++++|. ++.++....+.++.+...--.+..+. ......+++|+.|+++++ ++..+.
T Consensus 97 ~------~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~Ls~N-~l~~~~ 160 (487)
T 3oja_A 97 V------GPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLR--------DLDEGCRSRVQYLDLKLN-EIDTVN 160 (487)
T ss_dssp E------CTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGG--------GBCGGGGSSEEEEECTTS-CCCEEE
T ss_pred C------CCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCC--------chhhcCCCCCCEEECCCC-CCCCcC
Confidence 1 2556666666653 33332211122222111000000000 001122778888888887 344322
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEee
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVI 242 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 242 (270)
.. .....+++|++|+++++. ++.+++ ...+++|++|+++++ ++..+.. .+..+++|+.|+++++. +..+.
T Consensus 161 ~~--~l~~~l~~L~~L~Ls~N~-l~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~--~~~~l~~L~~L~Ls~N~-l~~lp- 230 (487)
T 3oja_A 161 FA--ELAASSDTLEHLNLQYNF-IYDVKG--QVVFAKLKTLDLSSN-KLAFMGP--EFQSAAGVTWISLRNNK-LVLIE- 230 (487)
T ss_dssp GG--GGGGGTTTCCEEECTTSC-CCEEEC--CCCCTTCCEEECCSS-CCCEECG--GGGGGTTCSEEECTTSC-CCEEC-
T ss_pred hH--HHhhhCCcccEEecCCCc-cccccc--cccCCCCCEEECCCC-CCCCCCH--hHcCCCCccEEEecCCc-Ccccc-
Confidence 21 122357889999998875 444432 235889999999876 4555432 25678889999999874 55442
Q ss_pred ccCCCCccceeecCccCeeecCCCC
Q 038160 243 NDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 243 ~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.....+++|+.|++.+.+
T Consensus 231 -------~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 231 -------KALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -------TTCCCCTTCCEEECTTCC
T ss_pred -------hhhccCCCCCEEEcCCCC
Confidence 112246788888887764
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.28 E-value=4.2e-11 Score=102.47 Aligned_cols=233 Identities=15% Similarity=0.073 Sum_probs=130.1
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEE--------eccC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLR--------LQGL 75 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~--------L~~~ 75 (270)
.++++|+++++++...+. +|..+. .+++|++|+++++..+....+.. ++++++|++|+|..-. +.++
T Consensus 50 ~~l~~L~L~~~~l~~~~~---~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP---IPSSLA-NLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEE---CCGGGG-GCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcc---cChhHh-CCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 467777777766653111 344444 67777777777644555443332 5677777777633221 2234
Q ss_pred CCcceecCCc---------cccCCCcccEEEeccCCCceeecccc--cc-cccCCCCCCCCCCCCCCCccccccccCcCC
Q 038160 76 PKLRCLYPGM---------HTSEWPALEILSVHRCDKLKIFTEDL--SQ-NNENDQLGIPAQQPPLPLEKEGCLEKHLGK 143 (270)
Q Consensus 76 ~~L~~~~~~~---------~~~~~~~L~~L~i~~c~~l~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~ 143 (270)
++|+.+.... ....+++|++|+++++.--..+|... .. .++.++...-.+.. . .......
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-----~---~~~~~~~ 196 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-----K---IPPTFAN 196 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-----E---CCGGGGG
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-----c---CChHHhC
Confidence 4444433221 12357889999999885322444321 11 22222211000000 0 0001112
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
++ |+.|+++++. +..... .....+++|++|+++++.-. ...+. ...+++|++|+++++. +... .+..+..+
T Consensus 197 l~-L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~L~~N~l~-~~~~~-~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l 267 (313)
T 1ogq_A 197 LN-LAFVDLSRNM-LEGDAS---VLFGSDKNTQKIHLAKNSLA-FDLGK-VGLSKNLNGLDLRNNR-IYGT-LPQGLTQL 267 (313)
T ss_dssp CC-CSEEECCSSE-EEECCG---GGCCTTSCCSEEECCSSEEC-CBGGG-CCCCTTCCEEECCSSC-CEEC-CCGGGGGC
T ss_pred Cc-ccEEECcCCc-ccCcCC---HHHhcCCCCCEEECCCCcee-eecCc-ccccCCCCEEECcCCc-ccCc-CChHHhcC
Confidence 44 8888888873 332221 22345889999999987643 32233 4568999999999875 4433 23456788
Q ss_pred cCCcEEEEecCCCcc-eEeeccCCCCccceeecCccCeeecCCCCC
Q 038160 224 VRLVKVQVYGCRAMT-EVVINDKDGVEKEEIVFCKLKTLQLFDLDS 268 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 268 (270)
++|+.|+++++. +. .+.. . ..+++|+.+++.+-|.
T Consensus 268 ~~L~~L~Ls~N~-l~~~ip~--------~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 268 KFLHSLNVSFNN-LCGEIPQ--------G-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp TTCCEEECCSSE-EEEECCC--------S-TTGGGSCGGGTCSSSE
T ss_pred cCCCEEECcCCc-ccccCCC--------C-ccccccChHHhcCCCC
Confidence 999999999995 33 2211 1 2578888888887653
No 37
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.27 E-value=3.5e-11 Score=102.78 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=109.9
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++.+++++.+ | ++. .+++|++|++++| .+..+.+ ++.+++|++|+ ++++. ++.+.
T Consensus 40 l~~L~~L~l~~~~i~~l------~-~~~-~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~-----L~~n~-l~~~~ 101 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI------E-GVQ-YLNNLIGLELKDN-QITDLAP---LKNLTKITELE-----LSGNP-LKNVS 101 (308)
T ss_dssp HHTCCEEECTTSCCCCC------T-TGG-GCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEE-----CCSCC-CSCCG
T ss_pred cCCcCEEEeeCCCccCc------h-hhh-ccCCCCEEEccCC-cCCCChh---HccCCCCCEEE-----ccCCc-CCCch
Confidence 57889999988777653 2 232 7899999999887 5665533 67788887774 44442 33332
Q ss_pred CCccccCCCcccEEEeccCCCceeeccc-ccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTED-LSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQL 161 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~ 161 (270)
....+++|++|++++|. ++.++.. ..+.++.++..--.+..+ .. ...+++|+.|+++++ ++..+
T Consensus 102 ---~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~---------~~-l~~l~~L~~L~l~~n-~l~~~ 166 (308)
T 1h6u_A 102 ---AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNI---------SP-LAGLTNLQYLSIGNA-QVSDL 166 (308)
T ss_dssp ---GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCC---------GG-GGGCTTCCEEECCSS-CCCCC
T ss_pred ---hhcCCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCCccCcC---------cc-ccCCCCccEEEccCC-cCCCC
Confidence 13457888888888874 4443310 012222221110000000 00 122677888888777 34332
Q ss_pred ccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 162 CKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.. ...+++|++|+++++. ++.+.+ ...+++|++|+++++ ++.++. ....+++|+.|++++++
T Consensus 167 ~~-----l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N-~l~~~~---~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 167 TP-----LANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKNN-QISDVS---PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GG-----GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTTS-CCCBCG---GGTTCTTCCEEEEEEEE
T ss_pred hh-----hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEEEccCC-ccCccc---cccCCCCCCEEEccCCe
Confidence 11 3346788888888764 333322 456788888888876 344432 24677888888888874
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.27 E-value=1.4e-10 Score=106.70 Aligned_cols=230 Identities=16% Similarity=0.158 Sum_probs=126.0
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEE------eccCC
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLR------LQGLP 76 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~------L~~~~ 76 (270)
+++|++|+++++.+.. +|.... .+ +|++|++.+|. +..+ +. +.+++|+.|++..-. ...++
T Consensus 281 l~~L~~L~l~~~~l~~------l~~~~~-~~-~L~~L~l~~n~-~~~l-~~---~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 281 LTNVSSFSLVSVTIER------VKDFSY-NF-GWQHLELVNCK-FGQF-PT---LKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp GTTCSEEEEESCEECS------CCBCCS-CC-CCSEEEEESCB-CSSC-CB---CBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred cCcccEEEecCccchh------hhhhhc-cC-CccEEeeccCc-cccc-Cc---ccccccCEEeCcCCccccccccccCC
Confidence 5788888888876664 333333 45 77777777763 3333 21 345555555411100 01233
Q ss_pred CcceecCCc-----------cccCCCcccEEEeccCCCceeecccc--cccccCCCCCCCCCCCCCCCccccccccCcCC
Q 038160 77 KLRCLYPGM-----------HTSEWPALEILSVHRCDKLKIFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGK 143 (270)
Q Consensus 77 ~L~~~~~~~-----------~~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~ 143 (270)
+|+.+..+. ....+++|++|++++|. ++.++... .+.++.++..--.+..... ......
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~ 419 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLS 419 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTT-------SCTTTT
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccc-------hhhhhc
Confidence 333322211 12346788888888874 44333211 1222222221000000000 001223
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|++++|. +..... .....+++|++|++++|.-.....|.....+++|++|++++|. ++.... ..+..+
T Consensus 420 l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l 493 (570)
T 2z63_A 420 LRNLIYLDISHTH-TRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSL 493 (570)
T ss_dssp CTTCCEEECTTSC-CEECCT---TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTC
T ss_pred CCCCCEEeCcCCc-ccccch---hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCCh-hhhhcc
Confidence 7889999999884 332211 2234578999999999875433335556778999999999874 554432 345678
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|+.|++++|. +..+.. .....+++|+.|++.+.|
T Consensus 494 ~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 494 SSLQVLNMASNQ-LKSVPD-------GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred cCCCEEeCCCCc-CCCCCH-------HHhhcccCCcEEEecCCc
Confidence 899999999983 544421 111246888888888753
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.25 E-value=2.9e-10 Score=102.43 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=36.9
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccc
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKE 251 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 251 (270)
+++|++|++++|. ++.+.+ ...+++|++|++++|. +..... ...+++|+.|++++|. +.++. .
T Consensus 286 l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---------~ 348 (466)
T 1o6v_A 286 LTALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNNK-VSDVS---------S 348 (466)
T ss_dssp CTTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSSC-CCCCG---------G
T ss_pred CCccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCCc-CCCchh---hccCccCCEeECCCCc-cCCch---------h
Confidence 4455555555442 222211 2345555555555552 332211 3455566666666652 33220 1
Q ss_pred eeecCccCeeecCCC
Q 038160 252 EIVFCKLKTLQLFDL 266 (270)
Q Consensus 252 ~~~~~~L~~L~l~~~ 266 (270)
...+++|+.|++.++
T Consensus 349 l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 349 LANLTNINWLSAGHN 363 (466)
T ss_dssp GTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCCC
Confidence 114677777777665
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.25 E-value=1.8e-10 Score=97.59 Aligned_cols=175 Identities=17% Similarity=0.075 Sum_probs=105.7
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++++++++.+++++. +|.+ ..+++++|+++++. +..+. +..++.+++|++| ++++. .++.+
T Consensus 8 ~l~~l~~l~~~~~~l~~------ip~~---~~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L-----~L~~n-~l~~~ 70 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA------LPPD---LPKDTTILHLSENL-LYTFS-LATLMPYTRLTQL-----NLDRA-ELTKL 70 (290)
T ss_dssp CSTTCCEEECTTSCCSS------CCSC---CCTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEE-----ECTTS-CCCEE
T ss_pred ccCCccEEECCCCCCCc------CCCC---CCCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEE-----ECCCC-ccCcc
Confidence 47889999999888876 4554 45789999999874 55553 3346788888777 45553 35554
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQL 161 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~ 161 (270)
... ..+++|++|+++++ .++.+|.. ...+++|+.|+++++ +++.+
T Consensus 71 ~~~---~~l~~L~~L~Ls~N-~l~~l~~~------------------------------~~~l~~L~~L~l~~N-~l~~l 115 (290)
T 1p9a_G 71 QVD---GTLPVLGTLDLSHN-QLQSLPLL------------------------------GQTLPALTVLDVSFN-RLTSL 115 (290)
T ss_dssp ECC---SCCTTCCEEECCSS-CCSSCCCC------------------------------TTTCTTCCEEECCSS-CCCCC
T ss_pred cCC---CCCCcCCEEECCCC-cCCcCchh------------------------------hccCCCCCEEECCCC-cCccc
Confidence 442 46888999999887 45544421 112566666666665 33332
Q ss_pred ccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 162 CKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
.. .....+++|++|+++++. ++.+++.....+++|++|+++++ +++.+. ...+..+++|+.|+++++
T Consensus 116 ~~---~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 116 PL---GALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELP-AGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CS---STTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred CH---HHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC-cCCccC-HHHhcCcCCCCEEECCCC
Confidence 21 112345667777766643 44443333345666777776654 344332 233455666777777666
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.24 E-value=4.4e-11 Score=107.78 Aligned_cols=50 Identities=24% Similarity=0.216 Sum_probs=33.9
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhcccccccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL 65 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 65 (270)
.+++|++|++++++++.+ |.+ .+++|++|+++++ .++.+ + ++.+++|++|
T Consensus 104 ~l~~L~~L~L~~N~l~~l------~~~---~l~~L~~L~l~~N-~l~~l-~---l~~l~~L~~L 153 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL------DVS---QNPLLTYLNCARN-TLTEI-D---VSHNTQLTEL 153 (457)
T ss_dssp TCTTCCEEECCSSCCSCC------CCT---TCTTCCEEECTTS-CCSCC-C---CTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCee------cCC---CCCcCCEEECCCC-cccee-c---cccCCcCCEE
Confidence 578889999988877753 322 7788888888776 35443 2 4566666665
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.24 E-value=1.4e-10 Score=99.77 Aligned_cols=224 Identities=15% Similarity=0.124 Sum_probs=123.1
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCC
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPG 84 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~ 84 (270)
+++++++++.+++. +|.. ..++|++|+++++ .++.+++ ..++++++|++|+ ++++ +++.+.+.
T Consensus 32 ~l~~l~~~~~~l~~------lp~~---~~~~l~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~-----L~~n-~l~~~~~~ 94 (330)
T 1xku_A 32 HLRVVQCSDLGLEK------VPKD---LPPDTALLDLQNN-KITEIKD-GDFKNLKNLHTLI-----LINN-KISKISPG 94 (330)
T ss_dssp ETTEEECTTSCCCS------CCCS---CCTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEE-----CCSS-CCCCBCTT
T ss_pred CCeEEEecCCCccc------cCcc---CCCCCeEEECCCC-cCCEeCh-hhhccCCCCCEEE-----CCCC-cCCeeCHH
Confidence 67788887776765 4554 4578999999997 5776643 3378889988884 4443 23333222
Q ss_pred ccccCCCcccEEEeccCCCceeecccccccccCCCCCCCC-----------CCCCCCCccccc-------cccCcCCCCC
Q 038160 85 MHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPA-----------QQPPLPLEKEGC-------LEKHLGKLAM 146 (270)
Q Consensus 85 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~c-------~e~~~~~~~~ 146 (270)
. ...+++|++|+++++. ++.+|....+.++.++..--. +..+..++--.+ .......+++
T Consensus 95 ~-~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 95 A-FAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp T-TTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred H-hcCCCCCCEEECCCCc-CCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 1 2356777777777763 555554333334433321100 000000000000 0011122667
Q ss_pred CCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCC
Q 038160 147 IKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRL 226 (270)
Q Consensus 147 L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 226 (270)
|+.|+++++ ++..+.. ...++|++|+++++. ++.+.+.....+++|++|+++++. ++.+.. ..+..+++|
T Consensus 173 L~~L~l~~n-~l~~l~~------~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L 242 (330)
T 1xku_A 173 LSYIRIADT-NITTIPQ------GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDN-GSLANTPHL 242 (330)
T ss_dssp CCEEECCSS-CCCSCCS------SCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECT-TTGGGSTTC
T ss_pred cCEEECCCC-ccccCCc------cccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeCh-hhccCCCCC
Confidence 777777766 2333211 123678888888764 444444445677888888888764 444432 345678889
Q ss_pred cEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 227 VKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 227 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
+.|++++|. +.++.. ....+++|++|++.++
T Consensus 243 ~~L~L~~N~-l~~lp~--------~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 243 RELHLNNNK-LVKVPG--------GLADHKYIQVVYLHNN 273 (330)
T ss_dssp CEEECCSSC-CSSCCT--------TTTTCSSCCEEECCSS
T ss_pred CEEECCCCc-CccCCh--------hhccCCCcCEEECCCC
Confidence 999998883 443311 1113455666665543
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.24 E-value=2.1e-10 Score=95.94 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=47.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|+++++ ++..+.. .....+++|++|+++++. ++.+.+.....+++|++|+++++ +++.+. ...+..+
T Consensus 132 l~~L~~L~Ls~n-~l~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l 204 (270)
T 2o6q_A 132 LTKLTYLSLGYN-ELQSLPK---GVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVP-EGAFDSL 204 (270)
T ss_dssp CTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTC
T ss_pred CcCCCEEECCCC-cCCccCH---hHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCC-HHHhccc
Confidence 667777777766 3333221 112346677777777653 44444433445677777777765 444432 2334556
Q ss_pred cCCcEEEEecCC
Q 038160 224 VRLVKVQVYGCR 235 (270)
Q Consensus 224 ~~L~~L~i~~c~ 235 (270)
++|+.|++++++
T Consensus 205 ~~L~~L~l~~N~ 216 (270)
T 2o6q_A 205 EKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEecCCC
Confidence 777777776643
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.24 E-value=7.5e-11 Score=100.92 Aligned_cols=205 Identities=14% Similarity=0.042 Sum_probs=112.4
Q ss_pred CCccEEEEecCcCccc--cCCchhhccccccceeEeee---EE------eccCCCcceecCCc---------cccCCCcc
Q 038160 34 QSLTRLVVWYCDKLKY--IFSASMIGNLKQLQHLELTT---LR------LQGLPKLRCLYPGM---------HTSEWPAL 93 (270)
Q Consensus 34 ~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~L~~---L~------L~~~~~L~~~~~~~---------~~~~~~~L 93 (270)
.+++.|++.++ .+.+ ..+ ..++++++|++|++.. +. +.++++|+.+.... ....+++|
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCC-CccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 68999999997 4543 223 2478999999987552 11 34455555443211 12357788
Q ss_pred cEEEeccCCCce-eecccc--cccccCCCCCCCCCCCCCCCccccccccCcCCCC-CCCEEEecCccccccccccccccc
Q 038160 94 EILSVHRCDKLK-IFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLA-MIKELKLYRPYHLKQLCKQDSKLG 169 (270)
Q Consensus 94 ~~L~i~~c~~l~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~-~L~~L~i~~c~~l~~~~~~~~~~~ 169 (270)
++|+++++. ++ ..|... .+.++.++...-.+.. . +......++ +|+.|+++++. +..... ...
T Consensus 128 ~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~-----~---~p~~l~~l~~~L~~L~L~~N~-l~~~~~---~~~ 194 (313)
T 1ogq_A 128 VTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISG-----A---IPDSYGSFSKLFTSMTISRNR-LTGKIP---PTF 194 (313)
T ss_dssp CEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEE-----E---CCGGGGCCCTTCCEEECCSSE-EEEECC---GGG
T ss_pred CEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccC-----c---CCHHHhhhhhcCcEEECcCCe-eeccCC---hHH
Confidence 888888874 33 333211 2222222211000000 0 000011244 78888888773 321111 112
Q ss_pred ccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCc
Q 038160 170 PIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVE 249 (270)
Q Consensus 170 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 249 (270)
..++ |++|+++++. ++...+.....+++|++|+++++.- .... +.+..+++|++|+++++. +.... +
T Consensus 195 ~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~l~~L~~L~Ls~N~-l~~~~-------p 261 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSL-AFDL--GKVGLSKNLNGLDLRNNR-IYGTL-------P 261 (313)
T ss_dssp GGCC-CSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEE-CCBG--GGCCCCTTCCEEECCSSC-CEECC-------C
T ss_pred hCCc-ccEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCce-eeec--CcccccCCCCEEECcCCc-ccCcC-------C
Confidence 2334 8888888864 3333344456788999999987743 2221 224567889999999885 33221 1
Q ss_pred cceeecCccCeeecCCC
Q 038160 250 KEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 250 ~~~~~~~~L~~L~l~~~ 266 (270)
.....+++|++|++.+.
T Consensus 262 ~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp GGGGGCTTCCEEECCSS
T ss_pred hHHhcCcCCCEEECcCC
Confidence 12225788888888765
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.24 E-value=1.5e-10 Score=104.34 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=38.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|+++++. +..+. ....+++|++|++++|. +....+ ...+++|++|++++| ++..+ .....+
T Consensus 286 l~~L~~L~L~~n~-l~~~~-----~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n-~l~~~---~~l~~l 352 (466)
T 1o6v_A 286 LTALTNLELNENQ-LEDIS-----PISNLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNN-KVSDV---SSLANL 352 (466)
T ss_dssp CTTCSEEECCSSC-CSCCG-----GGGGCTTCSEEECCSSC-CSCCGG--GGGCTTCCEEECCSS-CCCCC---GGGTTC
T ss_pred CCccCeEEcCCCc-ccCch-----hhcCCCCCCEEECcCCc-CCCchh--hccCccCCEeECCCC-ccCCc---hhhccC
Confidence 5566666666652 22221 12345666666666653 322222 335566666666655 33332 223455
Q ss_pred cCCcEEEEecC
Q 038160 224 VRLVKVQVYGC 234 (270)
Q Consensus 224 ~~L~~L~i~~c 234 (270)
++|+.|++++|
T Consensus 353 ~~L~~L~l~~n 363 (466)
T 1o6v_A 353 TNINWLSAGHN 363 (466)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEeCCCC
Confidence 66666666655
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.23 E-value=5.2e-10 Score=96.28 Aligned_cols=56 Identities=21% Similarity=0.289 Sum_probs=35.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++|++|++++++++.+. |..+. .+++|++|+++++ .++.+.+ ..++++++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~-----~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELR-----KDDFK-GLQHLYALVLVNN-KISKIHE-KAFSPLRKLQKLY 108 (332)
T ss_dssp CTTCCEEECCSSCCCEEC-----TTTTT-TCTTCCEEECCSS-CCCEECG-GGSTTCTTCCEEE
T ss_pred CCCCeEEECCCCcCCccC-----HhHhh-CCCCCcEEECCCC-ccCccCH-hHhhCcCCCCEEE
Confidence 356777777776666542 22222 7788888888776 4555533 3366777777775
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.22 E-value=2.7e-10 Score=98.02 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=53.5
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|++++++++.+. |..+. .+++|++|+++++ .++.++.. + .++|++| ++++. .++.+
T Consensus 76 ~l~~L~~L~L~~n~l~~~~-----~~~~~-~l~~L~~L~L~~n-~l~~l~~~--~--~~~L~~L-----~l~~n-~i~~~ 138 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIH-----EKAFS-PLRKLQKLYISKN-HLVEIPPN--L--PSSLVEL-----RIHDN-RIRKV 138 (332)
T ss_dssp TCTTCCEEECCSSCCCEEC-----GGGST-TCTTCCEEECCSS-CCCSCCSS--C--CTTCCEE-----ECCSS-CCCCC
T ss_pred CCCCCcEEECCCCccCccC-----HhHhh-CcCCCCEEECCCC-cCCccCcc--c--cccCCEE-----ECCCC-ccCcc
Confidence 5789999999998888752 33333 7999999999987 46655332 1 2667666 44443 23333
Q ss_pred cCCccccCCCcccEEEeccCC
Q 038160 82 YPGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~ 102 (270)
... ....+++|++|+++++.
T Consensus 139 ~~~-~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 139 PKG-VFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CSG-GGSSCSSCCEEECCSCC
T ss_pred CHh-HhCCCccCCEEECCCCc
Confidence 221 12457788888887774
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.21 E-value=2.4e-10 Score=95.59 Aligned_cols=200 Identities=23% Similarity=0.207 Sum_probs=132.2
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCC
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPG 84 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~ 84 (270)
+.+++++++.+++. +|.. ..++|++|+++++ .++.++ ...++++++|++| ++++. +++.+...
T Consensus 17 ~~~~l~~~~~~l~~------ip~~---~~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L-----~l~~n-~l~~i~~~ 79 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA------IPSN---IPADTKKLDLQSN-KLSSLP-SKAFHRLTKLRLL-----YLNDN-KLQTLPAG 79 (270)
T ss_dssp TTTEEECTTSCCSS------CCSC---CCTTCSEEECCSS-CCSCCC-TTSSSSCTTCCEE-----ECCSS-CCSCCCTT
T ss_pred CCCEEEccCCCCCc------cCCC---CCCCCCEEECcCC-CCCeeC-HHHhcCCCCCCEE-----ECCCC-ccCeeChh
Confidence 46778888877775 4543 3467999999987 466653 3346788888877 45443 34433332
Q ss_pred ccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccc
Q 038160 85 MHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQ 164 (270)
Q Consensus 85 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~ 164 (270)
. ...+++|++|+++++. ++.++. +....+++|+.|+++++ ++..+..
T Consensus 80 ~-~~~l~~L~~L~l~~n~-l~~~~~-----------------------------~~~~~l~~L~~L~l~~n-~l~~~~~- 126 (270)
T 2o6q_A 80 I-FKELKNLETLWVTDNK-LQALPI-----------------------------GVFDQLVNLAELRLDRN-QLKSLPP- 126 (270)
T ss_dssp T-TSSCTTCCEEECCSSC-CCCCCT-----------------------------TTTTTCSSCCEEECCSS-CCCCCCT-
T ss_pred h-hcCCCCCCEEECCCCc-CCcCCH-----------------------------hHcccccCCCEEECCCC-ccCeeCH-
Confidence 1 2457899999999884 444431 01123789999999987 3443322
Q ss_pred cccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeecc
Q 038160 165 DSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVIND 244 (270)
Q Consensus 165 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 244 (270)
.....+++|++|+++++. ++.+++.....+++|++|+++++ +++.+. ...+..+++|+.|+++++ .+..+..
T Consensus 127 --~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-- 198 (270)
T 2o6q_A 127 --RVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN-QLKRVP-EGAFDKLTELKTLKLDNN-QLKRVPE-- 198 (270)
T ss_dssp --TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSS-CCSCCCT--
T ss_pred --HHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC-cCcEeC-hhHhccCCCcCEEECCCC-cCCcCCH--
Confidence 223468999999999974 55655554567899999999987 455543 334567899999999998 4554421
Q ss_pred CCCCccceeecCccCeeecCCCC
Q 038160 245 KDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 245 ~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.....+++|+.|++.+.|
T Consensus 199 -----~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 199 -----GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -----TTTTTCTTCCEEECCSSC
T ss_pred -----HHhccccCCCEEEecCCC
Confidence 011247889999987654
No 49
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.21 E-value=2.7e-10 Score=98.96 Aligned_cols=200 Identities=22% Similarity=0.209 Sum_probs=126.9
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+|+++.+... +|.+.+..+++|+++.+.++.+++.+.+ ..++.+++|++|++..-.+...+..
T Consensus 52 ~l~~L~~L~Ls~N~i~~~-----i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~~--- 122 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEV-----IEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDV--- 122 (350)
T ss_dssp TCTTCCEEEEECCTTCCE-----ECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCCC---
T ss_pred CCCCCCEEECcCCCCCCc-----cChhHhhcchhhhhhhcccCCcccccCc-hhhhhccccccccccccccccCCch---
Confidence 478999999999776442 3444444788888888888888988744 4478899998886544333332211
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccc----cccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQ----NNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYH 157 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~ 157 (270)
......++..+++.++.+++.++..... ....+...--.+.. +........+++++.+.++..
T Consensus 123 ----~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~---------i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 123 ----HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE---------IHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp ----TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE---------ECTTSSTTEEEEEEECTTCTT
T ss_pred ----hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC---------CChhhccccchhHHhhccCCc
Confidence 1123445677888787777766632111 11111110000000 000011245788888888877
Q ss_pred ccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 158 LKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 158 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
++.+..+ +...+++|++|+++++ .++.+++. .|.+|++|.+.++.+++.+.. ...+++|+.+++.+
T Consensus 190 l~~i~~~---~f~~l~~L~~LdLs~N-~l~~lp~~---~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LEELPND---VFHGASGPVILDISRT-RIHSLPSY---GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCTT---TTTTEECCSEEECTTS-CCCCCCSS---SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred ccCCCHH---HhccCcccchhhcCCC-CcCccChh---hhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 7776432 2346889999999986 47666443 588999999999999887753 46788899888865
No 50
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.21 E-value=1.8e-10 Score=110.18 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=27.3
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++|++|+++++++... +|..+. .+++|++|++++|. +.+..+. .++.+++|+.|+
T Consensus 393 ~~~L~~L~L~~n~l~~~-----~p~~l~-~l~~L~~L~Ls~N~-l~~~~p~-~l~~l~~L~~L~ 448 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGK-----IPPTLS-NCSELVSLHLSFNY-LSGTIPS-SLGSLSKLRDLK 448 (768)
T ss_dssp TCCCCEEECCSSEEEEE-----CCGGGG-GCTTCCEEECCSSE-EESCCCG-GGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccc-----cCHHHh-cCCCCCEEECcCCc-ccCcccH-HHhcCCCCCEEE
Confidence 45677777766655532 233333 55566666665552 3222221 244555555444
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.21 E-value=1.9e-10 Score=105.45 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=34.5
Q ss_pred ccccceEEEecCcchhhhc--CCCcccCcCCcEEEeeCCcCCcccCC-hhHHhhccCCcEEEEecC
Q 038160 172 FQYLEILGVYHSQSLLILL--PSSSVSFRNLAKLVAFGCKELIHLVT-SSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~--~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c 234 (270)
+++|++|+++++.-....+ +.....+++|++|++++| +++.+.. ...+..+++|+.|++++|
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC
Confidence 5566666666654332221 111345677777777765 3333211 123566778888888887
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=5.1e-10 Score=108.03 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=63.0
Q ss_pred CCCCEEEecCccccccccccccccc-ccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc-----CCcccCChh
Q 038160 145 AMIKELKLYRPYHLKQLCKQDSKLG-PIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK-----ELIHLVTSS 218 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~-----~l~~l~~~~ 218 (270)
++|+.|+++++ ++..+.. ... ..+++|+.|+++++. +..+ |.....+++|+.|++++++ ++... .+.
T Consensus 728 ~~L~~L~Ls~N-~L~~lp~---~l~~~~l~~L~~L~Ls~N~-L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~ 800 (876)
T 4ecn_A 728 YLLTTIDLRFN-KLTSLSD---DFRATTLPYLSNMDVSYNC-FSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPT 800 (876)
T ss_dssp GGCCEEECCSS-CCCCCCG---GGSTTTCTTCCEEECCSSC-CSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCT
T ss_pred CCccEEECCCC-CCccchH---HhhhccCCCcCEEEeCCCC-CCcc-chhhhcCCCCCEEECCCCCCccccccccc-ChH
Confidence 37788888777 4543321 111 257788888888764 4444 3336677888888887643 22222 223
Q ss_pred HHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 219 TAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 219 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.+..+++|+.|++++|. +..+. . ..+++|+.|++.+++
T Consensus 801 ~l~~L~~L~~L~Ls~N~-L~~Ip--------~--~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSND-IRKVD--------E--KLTPQLYILDIADNP 838 (876)
T ss_dssp TGGGCSSCCEEECCSSC-CCBCC--------S--CCCSSSCEEECCSCT
T ss_pred HHhcCCCCCEEECCCCC-CCccC--------H--hhcCCCCEEECCCCC
Confidence 45667888888888874 34441 0 134678888877775
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.20 E-value=2.7e-12 Score=118.81 Aligned_cols=58 Identities=17% Similarity=0.018 Sum_probs=28.3
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEe
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVA 205 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i 205 (270)
+++|++|++++|. +..... ......+++|++|++++|-.-..+ ......+++|++|++
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l--~~~~~~~~~L~~L~l~~~~~~~~l-~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDL--VKLLCQCPKLQRLWVLDYIEDAGL-EVLASTCKDLRELRV 345 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHH--HHHHTTCTTCCEEEEEGGGHHHHH-HHHHHHCTTCCEEEE
T ss_pred hCCCCEEEccCCC-CCHHHH--HHHHhcCCCcCEEeCcCccCHHHH-HHHHHhCCCCCEEEE
Confidence 5677778777775 332110 011224566777777666211111 111223566666666
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.20 E-value=1.2e-10 Score=101.08 Aligned_cols=93 Identities=26% Similarity=0.256 Sum_probs=64.4
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|++++++++.+. |..+. .+++|++|+++++ .++.+ +...++++++|++| ++++. .++.+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~-----~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L-----~L~~n-~l~~l 139 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIE-----EDSFS-SLGSLEHLDLSYN-YLSNL-SSSWFKPLSSLTFL-----NLLGN-PYKTL 139 (353)
T ss_dssp TCTTCCEEECTTSCCCEEC-----TTTTT-TCTTCCEEECCSS-CCSSC-CHHHHTTCTTCSEE-----ECTTC-CCSSS
T ss_pred cCCCCCEEECCCCccCccC-----HhhcC-CCCCCCEEECCCC-cCCcC-CHhHhCCCccCCEE-----ECCCC-CCccc
Confidence 5789999999998888742 22233 7899999999987 46655 44446788888887 45444 33333
Q ss_pred cCCccccCCCcccEEEeccCCCceeec
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
........+++|++|+++++..++.++
T Consensus 140 ~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 140 GETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CchhhhccCCCCcEEECCCCccccccC
Confidence 331223468899999999987666654
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.18 E-value=6.1e-10 Score=107.54 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=32.3
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
.+++|++|+++++. ++.+.+.....+++|++|+++++ ++..+. ...+..+++|+.|+++++
T Consensus 312 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 312 GLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQ-DQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp TCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCC-SSCSCSCCCCCEEEEETC
T ss_pred CCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccC-hhhhcCCCCCCEEECCCC
Confidence 35566666666543 33333333455666666666655 333332 223355666666666665
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.18 E-value=1.2e-09 Score=102.00 Aligned_cols=76 Identities=24% Similarity=0.148 Sum_probs=44.2
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccc
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKE 251 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 251 (270)
+++|++|+++++ .++.++ ..+++|++|+++++ +++.+.. .+++|+.|++++|. +.++. ..
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp----~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N~-L~~lp--------~~ 279 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP----VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQ-LTRLP--------ES 279 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CCSCC--------GG
T ss_pred CCCCCEEEccCC-ccCcCC----CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCCC-CCcCC--------HH
Confidence 466777777765 344432 34577777777765 4544322 45677777777773 44331 11
Q ss_pred eeecCccCeeecCCCC
Q 038160 252 EIVFCKLKTLQLFDLD 267 (270)
Q Consensus 252 ~~~~~~L~~L~l~~~~ 267 (270)
...+++|+.|++.+.+
T Consensus 280 l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 280 LIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGSCTTCEEECCSCC
T ss_pred HhhccccCEEEecCCC
Confidence 2246777777777654
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.17 E-value=6.4e-10 Score=107.41 Aligned_cols=85 Identities=21% Similarity=0.133 Sum_probs=54.6
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.+++++|+|+++.++.+.. ..+. .+++|++|++++|.....+ ++..++++++|++|+ |+++ +++...
T Consensus 23 p~~l~~LdLs~N~i~~i~~-----~~~~-~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~-----Ls~N-~l~~~~ 89 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTA-----SSFP-FLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILD-----LGSS-KIYFLH 89 (844)
T ss_dssp CTTCCEEEEESCCCCEECS-----SSCS-SCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEE-----CTTC-CCCEEC
T ss_pred CCCcCEEECCCCcCCccCh-----hHCc-ccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEE-----CCCC-cCcccC
Confidence 4789999999988887532 3333 8999999999998666555 334478888888875 4333 233332
Q ss_pred CCccccCCCcccEEEeccC
Q 038160 83 PGMHTSEWPALEILSVHRC 101 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c 101 (270)
+.. ...+++|++|++++|
T Consensus 90 p~~-~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 90 PDA-FQGLFHLFELRLYFC 107 (844)
T ss_dssp TTS-SCSCSSCCCEECTTC
T ss_pred HhH-ccCCcccCEeeCcCC
Confidence 221 124555566665555
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.16 E-value=1.5e-10 Score=98.37 Aligned_cols=206 Identities=16% Similarity=0.095 Sum_probs=119.0
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.++.+.. .|.... .+++|++|+++++ .+..++.. +..+++|++|++..-.+. .+
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~---~~~~~~-~~~~L~~L~Ls~n-~i~~l~~~--~~~l~~L~~L~l~~n~l~------~~ 116 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGC---CSQSDF-GTTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSNLK------QM 116 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEE---EEHHHH-SCSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTSEEE------SS
T ss_pred ccccCCEEECCCCccCcccC---cccccc-cccccCEEECCCC-ccccChhh--cCCCCCCCEEECCCCccc------cc
Confidence 57899999999988875422 123333 6899999999987 45555333 677888887753332222 22
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHL 158 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l 158 (270)
........+++|++|+++++. ++...... .+.++.++...-.+.. .. .......+++|+.|+++++ ++
T Consensus 117 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~---~~~~~~~l~~L~~L~Ls~n-~l 187 (306)
T 2z66_A 117 SEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE----NF---LPDIFTELRNLTFLDLSQC-QL 187 (306)
T ss_dssp TTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG----GE---ECSCCTTCTTCCEEECTTS-CC
T ss_pred ccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc----cc---chhHHhhCcCCCEEECCCC-Cc
Confidence 211123456778888888774 33222111 1122222110000000 00 0011233889999999988 34
Q ss_pred cccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc-cCCcEEEEecCC
Q 038160 159 KQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL-VRLVKVQVYGCR 235 (270)
Q Consensus 159 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l-~~L~~L~i~~c~ 235 (270)
..+.. .....+++|++|+++++. ++.+.+.....+++|++|+++++. +...... .+..+ ++|+.|++++++
T Consensus 188 ~~~~~---~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 188 EQLSP---TAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQ-ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CEECT---TTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC-CCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred CCcCH---HHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC-CcccCHH-HHHhhhccCCEEEccCCC
Confidence 44322 223457899999999875 444444335668999999999874 4443332 23445 489999999874
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.16 E-value=3.6e-10 Score=103.92 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=63.8
Q ss_pred CCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhh
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 222 (270)
.+++|+.|++++|.-...... .....+++|++|++++|. ++.+.+.....+++|++|++++| +++.+. +..+..
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~ 516 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVP-DGIFDR 516 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTT
T ss_pred cCCcCcEEECcCCcCccccch---hhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCC-HHHhhc
Confidence 388999999999952211111 224458999999999985 55555555678899999999987 566553 345578
Q ss_pred ccCCcEEEEecCC
Q 038160 223 LVRLVKVQVYGCR 235 (270)
Q Consensus 223 l~~L~~L~i~~c~ 235 (270)
+++|+.|++++++
T Consensus 517 l~~L~~L~l~~N~ 529 (570)
T 2z63_A 517 LTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCcEEEecCCc
Confidence 8999999999975
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.14 E-value=7.2e-10 Score=104.30 Aligned_cols=112 Identities=19% Similarity=0.056 Sum_probs=58.8
Q ss_pred CCCCCEEEecCccccccccccc----c-cccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQD----S-KLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSS 218 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~----~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 218 (270)
+++|+.|+++++ ++..++... . .....+++|++|+++++. ++.+++.....+++|++|+++++ +++.+ +..
T Consensus 503 l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~ 578 (680)
T 1ziw_A 503 LEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLN-NLNTL-PAS 578 (680)
T ss_dssp CTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTT
T ss_pred ccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCcceeECCCC-CCCcC-CHh
Confidence 667777777766 344332211 0 012346677777777653 44444433455677777777643 45543 223
Q ss_pred HHhhccCCcEEEEecCCCcceEeeccCCCCcccee-ecCccCeeecCCCC
Q 038160 219 TAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEI-VFCKLKTLQLFDLD 267 (270)
Q Consensus 219 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 267 (270)
.+..+++|+.|+++++ ++..+.. .... .+++|+.|++.+.|
T Consensus 579 ~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKN-LITSVEK-------KVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTTTCTTCCEEECTTS-CCCBCCH-------HHHHHHHTTCSEEECTTCC
T ss_pred HhCCCCCCCEEECCCC-cCCccCh-------hHhcccccccCEEEccCCC
Confidence 4456677777777776 2333310 0001 35666666666543
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.13 E-value=5.9e-10 Score=93.31 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=102.8
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++|++|++++++++.+.. ..+. .+++|++|+++++ .++.+.+ ..++++++|++| ++++. .++.+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~-----~~~~-~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L-----~L~~n-~l~~~~~ 93 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-----YSFF-SFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTL-----ILTGN-PIQSLAL 93 (276)
T ss_dssp TTCCEEECTTCCCCEECT-----TTTT-TCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEE-----ECTTC-CCCEECT
T ss_pred CCccEEECCCCcccccCH-----hHhc-cccCCcEEECCCC-cCCccCH-HHccCCcCCCEE-----ECCCC-ccCccCh
Confidence 358999999888877432 1232 7899999999887 5666533 336778888777 45544 2444433
Q ss_pred CccccCCCcccEEEeccCCCceeecccc---cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDL---SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQ 160 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~ 160 (270)
.. ...+++|++|+++++. ++.++... .+.++.++...-.+.... +......+++|+.|+++++ +++.
T Consensus 94 ~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------l~~~~~~l~~L~~L~Ls~N-~l~~ 163 (276)
T 2z62_A 94 GA-FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFK-------LPEYFSNLTNLEHLDLSSN-KIQS 163 (276)
T ss_dssp TT-TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCC-------CCGGGGGCTTCCEEECCSS-CCCE
T ss_pred hh-hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceec-------CchhhccCCCCCEEECCCC-CCCc
Confidence 22 2457788888888773 33332111 111111111000000000 0001122566777777666 2333
Q ss_pred cccccccccccccccc----eEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 161 LCKQDSKLGPIFQYLE----ILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 161 ~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
+... ....+++|+ +|+++++. ++.+.+. .....+|++|+++++. ++.+. ...+..+++|+.|++++
T Consensus 164 ~~~~---~~~~l~~L~~l~l~L~ls~n~-l~~~~~~-~~~~~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 164 IYCT---DLRVLHQMPLLNLSLDLSLNP-MNFIQPG-AFKEIRLKELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp ECGG---GGHHHHTCTTCCEEEECCSSC-CCEECTT-SSCSCCEEEEECCSSC-CSCCC-TTTTTTCCSCCEEECCS
T ss_pred CCHH---HhhhhhhccccceeeecCCCc-ccccCcc-ccCCCcccEEECCCCc-eeecC-HhHhcccccccEEEccC
Confidence 2211 122234444 56666543 3333333 3334467777777654 54432 23345677777777774
No 62
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=5.6e-10 Score=107.73 Aligned_cols=116 Identities=12% Similarity=-0.030 Sum_probs=70.9
Q ss_pred CCCCCEEEecCccccccccccccc-c---cccccccceEEEecCcchhhhcCCCcc--cCcCCcEEEeeCCcCCcccCCh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSK-L---GPIFQYLEILGVYHSQSLLILLPSSSV--SFRNLAKLVAFGCKELIHLVTS 217 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~-~---~~~l~~L~~L~l~~c~~l~~~~~~~~~--~~~~L~~L~i~~c~~l~~l~~~ 217 (270)
+++|+.|+++++ ++..+...... . ...+++|++|++++|. ++.++.. .. .+++|++|+++++ ++..+ +
T Consensus 696 l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~-l~~~~l~~L~~L~Ls~N-~L~~l--p 769 (876)
T 4ecn_A 696 GSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDD-FRATTLPYLSNMDVSYN-CFSSF--P 769 (876)
T ss_dssp TCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGG-GSTTTCTTCCEEECCSS-CCSSC--C
T ss_pred CCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-CccchHH-hhhccCCCcCEEEeCCC-CCCcc--c
Confidence 678888888887 44443221100 0 1123489999999874 5555333 44 7899999999976 45543 3
Q ss_pred hHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 218 STAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 218 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
..+..+++|+.|++++++.+..-.... ..+.....+++|+.|++.++.
T Consensus 770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~--~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQRDAEGNRILR--QWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CGGGGCTTCCEEECCCCBCTTCCBCCC--CCCTTGGGCSSCCEEECCSSC
T ss_pred hhhhcCCCCCEEECCCCCCcccccccc--cChHHHhcCCCCCEEECCCCC
Confidence 345688999999998865222111000 112222358899999998874
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.11 E-value=1.2e-09 Score=91.41 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=105.9
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++.++.++.+ + ++. .+++|++|+++++. +..+ + .++.+++|++| +++++ .++.+.
T Consensus 40 l~~L~~L~l~~~~i~~~------~-~l~-~l~~L~~L~l~~n~-l~~~-~--~l~~l~~L~~L-----~L~~n-~l~~~~ 101 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV------Q-GIQ-YLPNVRYLALGGNK-LHDI-S--ALKELTNLTYL-----ILTGN-QLQSLP 101 (272)
T ss_dssp HTTCCEEECTTSCCCCC------T-TGG-GCTTCCEEECTTSC-CCCC-G--GGTTCTTCCEE-----ECTTS-CCCCCC
T ss_pred ccceeeeeeCCCCcccc------c-ccc-cCCCCcEEECCCCC-CCCc-h--hhcCCCCCCEE-----ECCCC-ccCccC
Confidence 46777888877666542 1 122 67888888888763 4443 2 35677777666 45554 344433
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
... ...+++|++|++++|. ++.++.. ....+++|+.|+++++ ++..+.
T Consensus 102 ~~~-~~~l~~L~~L~L~~n~-l~~~~~~-----------------------------~~~~l~~L~~L~L~~n-~l~~~~ 149 (272)
T 3rfs_A 102 NGV-FDKLTNLKELVLVENQ-LQSLPDG-----------------------------VFDKLTNLTYLNLAHN-QLQSLP 149 (272)
T ss_dssp TTT-TTTCTTCCEEECTTSC-CCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCCCC
T ss_pred hhH-hcCCcCCCEEECCCCc-CCccCHH-----------------------------HhccCCCCCEEECCCC-ccCccC
Confidence 321 2356788888888873 4433310 0122677888888877 444332
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
. .....+++|++|++++|. ++.+.+.....+++|++|+++++. ++.+. ...+..+++|+.|++++++
T Consensus 150 ~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 150 K---GVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVP-DGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp T---TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred H---HHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccC-HHHHhCCcCCCEEEccCCC
Confidence 2 112346788888888764 555544434567888888888763 44432 2344667788888887754
No 64
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.11 E-value=1.2e-09 Score=102.33 Aligned_cols=104 Identities=12% Similarity=0.146 Sum_probs=58.1
Q ss_pred CCCEEEecCccccccccccccccc-ccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc-----CCcccCChhH
Q 038160 146 MIKELKLYRPYHLKQLCKQDSKLG-PIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK-----ELIHLVTSST 219 (270)
Q Consensus 146 ~L~~L~i~~c~~l~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~-----~l~~l~~~~~ 219 (270)
+|+.|+++++ ++..+.. ... ..+++|++|+++++. ++.+ |.....+++|++|+++++. ++.... +..
T Consensus 489 ~L~~L~Ls~N-~l~~lp~---~~~~~~l~~L~~L~Ls~N~-l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~-p~~ 561 (636)
T 4eco_A 489 LLTSIDLRFN-KLTKLSD---DFRATTLPYLVGIDLSYNS-FSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREW-PEG 561 (636)
T ss_dssp GCCEEECCSS-CCCBCCG---GGSTTTCTTCCEEECCSSC-CSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCC-CTT
T ss_pred CccEEECcCC-cCCccCh---hhhhccCCCcCEEECCCCC-CCCc-ChhhhcCCCCCEEECCCCcccccCcccccC-hHH
Confidence 6777777776 3443321 111 256777777777754 3344 3335667777777776533 122222 233
Q ss_pred HhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 220 AKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 220 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
+..+++|+.|++++|. +.++. . ..+++|+.|++.+++
T Consensus 562 l~~l~~L~~L~Ls~N~-l~~ip--------~--~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 562 ITLCPSLTQLQIGSND-IRKVN--------E--KITPNISVLDIKDNP 598 (636)
T ss_dssp GGGCSSCCEEECCSSC-CCBCC--------S--CCCTTCCEEECCSCT
T ss_pred HhcCCCCCEEECCCCc-CCccC--------H--hHhCcCCEEECcCCC
Confidence 4567778888877774 34331 0 023667777776664
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.10 E-value=7.3e-10 Score=94.61 Aligned_cols=207 Identities=15% Similarity=0.057 Sum_probs=123.1
Q ss_pred CCCCccEEEEeccccceecccccccCccc-CcCCCccEEEEecCcCccccCCchhhccc-----cccceeEeeeEEeccC
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVF-PHFQSLTRLVVWYCDKLKYIFSASMIGNL-----KQLQHLELTTLRLQGL 75 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~L~~L~L~~~ 75 (270)
.+++|++|++++++++.. .|..++ ..+++|++|+++++ .+++. + ..++.+ ++|++| ++++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~-----~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~-~~~~~l~~~~~~~L~~L-----~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGT-----APPPLLEATGPDLNILNLRNV-SWATR-D-AWLAELQQWLKPGLKVL-----SIAQA 159 (312)
T ss_dssp TTSCCCEEEEEEEBCBSC-----CCCCSSSCCSCCCSEEEEESC-BCSSS-S-SHHHHHHTTCCTTCCEE-----EEESC
T ss_pred CcCCccEEEccCCcccch-----hHHHHHHhcCCCccEEEccCC-CCcch-h-HHHHHHHHhhcCCCcEE-----EeeCC
Confidence 477888999988777642 344331 27888999999886 45555 3 235555 676666 45554
Q ss_pred CCcceecCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCc
Q 038160 76 PKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRP 155 (270)
Q Consensus 76 ~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c 155 (270)
. ++.+.... ...+++|++|+++++.-....+.. .. .....+++|++|+++++
T Consensus 160 ~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~-----~~---------------------~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 160 H-SLNFSCEQ-VRVFPALSTLDLSDNPELGERGLI-----SA---------------------LCPLKFPTLQVLALRNA 211 (312)
T ss_dssp S-CCCCCTTT-CCCCSSCCEEECCSCTTCHHHHHH-----HH---------------------SCTTSCTTCCEEECTTS
T ss_pred C-CccchHHH-hccCCCCCEEECCCCCcCcchHHH-----HH---------------------HHhccCCCCCEEECCCC
Confidence 2 33333222 246788888888888632211100 00 00123788999999988
Q ss_pred ccccccccccccccccccccceEEEecCcchhhhcC-CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 156 YHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP-SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 156 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
++..+..........+++|++|+++++. ++...+ .....+++|++|+++++. ++.+. ..+. ++|+.|+++++
T Consensus 212 -~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip-~~~~---~~L~~L~Ls~N 284 (312)
T 1wwl_A 212 -GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVP-KGLP---AKLSVLDLSYN 284 (312)
T ss_dssp -CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCC-SSCC---SEEEEEECCSS
T ss_pred -cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cChhh-hhcc---CCceEEECCCC
Confidence 3442211001112346899999999875 444332 224457899999999874 55432 2221 68999999988
Q ss_pred CCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 235 RAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
. +.++. . ...+++|++|++.+-
T Consensus 285 ~-l~~~p--------~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 285 R-LDRNP--------S-PDELPQVGNLSLKGN 306 (312)
T ss_dssp C-CCSCC--------C-TTTSCEEEEEECTTC
T ss_pred C-CCCCh--------h-HhhCCCCCEEeccCC
Confidence 4 44441 1 124788888888764
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.10 E-value=2.4e-09 Score=100.71 Aligned_cols=248 Identities=19% Similarity=0.099 Sum_probs=121.2
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeee--------------
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTT-------------- 69 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~-------------- 69 (270)
++|++|++++++++.+. |..+. .+++|++|+++++ .+....+ ..++++++|++|++..
T Consensus 248 ~~L~~L~Ls~n~l~~~~-----~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVG-----NDSFA-WLPQLEYFFLEYN-NIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp SCCCEEECTTSCCCEEC-----TTTTT-TCTTCCEEECCSC-CBSEECT-TTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred CCCCEEECCCCCcCccC-----ccccc-CcccccEeeCCCC-ccCccCh-hhhcCCCCccEEeccchhhhcccccccccc
Confidence 45999999988777642 22233 7889999999887 4555433 3367778887776421
Q ss_pred ---EEeccCCCcceecCCc---------cccCCCcccEEEeccCCC-ceeecccc-----cccccCCCCC---CC-----
Q 038160 70 ---LRLQGLPKLRCLYPGM---------HTSEWPALEILSVHRCDK-LKIFTEDL-----SQNNENDQLG---IP----- 123 (270)
Q Consensus 70 ---L~L~~~~~L~~~~~~~---------~~~~~~~L~~L~i~~c~~-l~~~~~~~-----~~~~~~~~~~---~~----- 123 (270)
..+.++++|+.+.... ....+++|++|++++|.. +..++... .+.++.++.. +.
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~ 399 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence 0233455555554322 123467888888887741 22332111 0112211110 00
Q ss_pred CCCCCCCCccc---cc-cc-----cCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchh-hhcCCC
Q 038160 124 AQQPPLPLEKE---GC-LE-----KHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLL-ILLPSS 193 (270)
Q Consensus 124 ~~~~l~~~~~~---~c-~e-----~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~ 193 (270)
.+..+..++.+ .+ +. .....+++|+.|+++++. +..+.. .....+++|++|+++++..-. ...+..
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~p~~ 475 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTR---NSFALVPSLQRLMLRRVALKNVDSSPSP 475 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCT---TTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeCh---hhhhcCcccccchhccccccccccCCcc
Confidence 00000000000 00 00 011124555555555553 222111 112335667777766653210 112333
Q ss_pred cccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccC-CCCccceeecCccCeeecCCC
Q 038160 194 SVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDK-DGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 194 ~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 266 (270)
...+++|++|+++++ +++.+ ....+..+++|+.|+++++. +..+..... ++.......+++|+.|++.+.
T Consensus 476 ~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 476 FQPLRNLTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cccCCCCCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 556777888888765 34443 23345677888888888874 433311000 000001124678888888765
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.10 E-value=7.5e-10 Score=101.48 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++|++|++++++++.+. |..+. .+++|++|+++++ .++.+++ ..++++++|++| ++++. ++++...
T Consensus 26 ~~L~~L~Ls~n~l~~~~-----~~~~~-~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L-----~Ls~n-~l~~~~~ 91 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-----HGDLR-ACANLQVLILKSS-RINTIEG-DAFYSLGSLEHL-----DLSDN-HLSSLSS 91 (549)
T ss_dssp TTCCEEECCSSCCCEEC-----SSTTS-SCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEE-----ECTTS-CCCSCCH
T ss_pred CCccEEECcCCccCccC-----hhhhh-cCCcccEEECCCC-CcCccCh-hhccccccCCEE-----ECCCC-ccCccCH
Confidence 56777887777676542 22222 6777888887776 4555433 335667776666 44443 2232222
Q ss_pred CccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCK 163 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~ 163 (270)
. ....+++|++|+++++. ++.++. ......+++|+.|+++++..+..+..
T Consensus 92 ~-~~~~l~~L~~L~Ls~n~-l~~~~~----------------------------~~~~~~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 92 S-WFGPLSSLKYLNLMGNP-YQTLGV----------------------------TSLFPNLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp H-HHTTCTTCCEEECTTCC-CSSSCS----------------------------SCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred H-HhccCCCCcEEECCCCc-ccccch----------------------------hhhhhccCCccEEECCCCccccccCH
Confidence 1 12356677777777763 322110 00012277788888887754444321
Q ss_pred ccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 164 QDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.....+++|++|+++++. ++...+.....+++|++|++.++.. ..+ .......+++|+.|+++++.
T Consensus 142 ---~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~-~~~-~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 142 ---IDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSES-AFL-LEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp ---TTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSBS-TTH-HHHHHHSTTTBSEEEEESCB
T ss_pred ---hhhhcccccCeeeccCCc-ccccChhhhhccccCceEecccCcc-ccc-chhhHhhcccccEEEccCCc
Confidence 123347788888888765 3333344456677777777776643 211 22233457778888877764
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.09 E-value=4.1e-10 Score=96.39 Aligned_cols=191 Identities=12% Similarity=0.004 Sum_probs=117.3
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+++|++|+++++ .++.+ ++..++.+++|++| +++++. ++.... ...+++|++|+++++. ++.++..
T Consensus 32 ~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L-----~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n~-l~~l~~~- 98 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQI-SAADLAPFTKLELL-----NLSSNV-LYETLD---LESLSTLRTLDLNNNY-VQELLVG- 98 (317)
T ss_dssp TGGGCSEEECTTS-CCCCC-CHHHHTTCTTCCEE-----ECTTSC-CEEEEE---ETTCTTCCEEECCSSE-EEEEEEC-
T ss_pred cCCCCCEEECcCC-ccCcC-CHHHhhCCCcCCEE-----ECCCCc-CCcchh---hhhcCCCCEEECcCCc-cccccCC-
Confidence 6789999999997 56665 33447888988887 555542 333322 3568899999999984 6655521
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccC-cCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhc
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKH-LGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILL 190 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~-~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 190 (270)
+.++.++...-. +.+. ...+++|+.|+++++ ++..+.. .....+++|++|+++++. ++...
T Consensus 99 -~~L~~L~l~~n~------------l~~~~~~~~~~L~~L~l~~N-~l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~ 160 (317)
T 3o53_A 99 -PSIETLHAANNN------------ISRVSCSRGQGKKNIYLANN-KITMLRD---LDEGCRSRVQYLDLKLNE-IDTVN 160 (317)
T ss_dssp -TTCCEEECCSSC------------CSEEEECCCSSCEEEECCSS-CCCSGGG---BCTGGGSSEEEEECTTSC-CCEEE
T ss_pred -CCcCEEECCCCc------------cCCcCccccCCCCEEECCCC-CCCCccc---hhhhccCCCCEEECCCCC-CCccc
Confidence 223322211000 0000 112778888888887 3443321 123457889999998864 43333
Q ss_pred CCC-cccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 191 PSS-SVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 191 ~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
+.. ...+++|++|+++++. ++.+.. ...+++|+.|+++++. +.++.. ....+++|+.|++.++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNF-IYDVKG---QVVFAKLKTLDLSSNK-LAFMGP--------EFQSAAGVTWISLRNN 224 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSC-CCEEEC---CCCCTTCCEEECCSSC-CCEECG--------GGGGGTTCSEEECTTS
T ss_pred HHHHhhccCcCCEEECCCCc-Cccccc---ccccccCCEEECCCCc-CCcchh--------hhcccCcccEEECcCC
Confidence 321 2357899999998874 554422 1247889999999884 555521 1225788898888765
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.06 E-value=2e-09 Score=90.12 Aligned_cols=177 Identities=21% Similarity=0.193 Sum_probs=120.3
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+++|+.|++.++ .++.+. .++.+++|++| +++++. ++.+. ....+++|++|++++| .++.++..
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~---~l~~l~~L~~L-----~l~~n~-l~~~~---~l~~l~~L~~L~L~~n-~l~~~~~~- 103 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQ---GIQYLPNVRYL-----ALGGNK-LHDIS---ALKELTNLTYLILTGN-QLQSLPNG- 103 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCT---TGGGCTTCCEE-----ECTTSC-CCCCG---GGTTCTTCCEEECTTS-CCCCCCTT-
T ss_pred cccceeeeeeCCC-Cccccc---ccccCCCCcEE-----ECCCCC-CCCch---hhcCCCCCCEEECCCC-ccCccChh-
Confidence 7899999999887 355442 26778888777 455542 33332 2346889999999998 35444310
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
....+++|+.|+++++ ++..+.. .....+++|++|++++| .++.+.+
T Consensus 104 ----------------------------~~~~l~~L~~L~L~~n-~l~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~~ 150 (272)
T 3rfs_A 104 ----------------------------VFDKLTNLKELVLVEN-QLQSLPD---GVFDKLTNLTYLNLAHN-QLQSLPK 150 (272)
T ss_dssp ----------------------------TTTTCTTCCEEECTTS-CCCCCCT---TTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred ----------------------------HhcCCcCCCEEECCCC-cCCccCH---HHhccCCCCCEEECCCC-ccCccCH
Confidence 0123889999999998 3444322 12345899999999998 4666655
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
.....+++|++|++++| +++.+. ...+..+++|+.|+++++. +..+.. .....+++|++|++.+.
T Consensus 151 ~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYN-QLQSLP-EGVFDKLTQLKDLRLYQNQ-LKSVPD-------GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSS
T ss_pred HHhccCccCCEEECCCC-CcCccC-HHHhcCCccCCEEECCCCc-CCccCH-------HHHhCCcCCCEEEccCC
Confidence 54567899999999988 455543 3345788999999999984 444321 11124788999998764
No 70
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.05 E-value=1.5e-09 Score=91.84 Aligned_cols=167 Identities=18% Similarity=0.229 Sum_probs=110.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++++++++.+ |. +. .+++|++|+++++ .++++.+ ++.+++|++|+ +++. .++.+.
T Consensus 45 l~~L~~L~l~~~~i~~~------~~-~~-~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~-----l~~n-~l~~~~ 106 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV------QG-IQ-YLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLF-----LDEN-KVKDLS 106 (291)
T ss_dssp HHTCCEEECTTSCCCCC------TT-GG-GCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEE-----CCSS-CCCCGG
T ss_pred cCcccEEEccCCCcccC------hh-Hh-cCCCCCEEEccCC-ccCCCcc---cccCCCCCEEE-----CCCC-cCCCCh
Confidence 46788888888777653 21 22 6888888888876 4555433 66777777764 4443 233322
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
. ...+++|++|++++|. ++.++. ...+++|+.|+++++ ++..+
T Consensus 107 ~---l~~l~~L~~L~L~~n~-i~~~~~-------------------------------l~~l~~L~~L~l~~n-~l~~~- 149 (291)
T 1h6t_A 107 S---LKDLKKLKSLSLEHNG-ISDING-------------------------------LVHLPQLESLYLGNN-KITDI- 149 (291)
T ss_dssp G---GTTCTTCCEEECTTSC-CCCCGG-------------------------------GGGCTTCCEEECCSS-CCCCC-
T ss_pred h---hccCCCCCEEECCCCc-CCCChh-------------------------------hcCCCCCCEEEccCC-cCCcc-
Confidence 1 3467788888888873 443321 112788999999988 34433
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.....+++|++|++++|. ++.+.+ ...+++|++|+++++ .++++ +....+++|+.|++++++
T Consensus 150 ----~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N-~i~~l---~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 ----TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKN-HISDL---RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ----GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCBC---GGGTTCTTCSEEEEEEEE
T ss_pred ----hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCC-cCCCC---hhhccCCCCCEEECcCCc
Confidence 123458899999999874 444433 567899999999987 55554 235778999999999874
No 71
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.05 E-value=1.5e-09 Score=101.61 Aligned_cols=116 Identities=12% Similarity=-0.018 Sum_probs=68.6
Q ss_pred CCCCCEEEecCccccccccccccc-c---cccccccceEEEecCcchhhhcCCCcc--cCcCCcEEEeeCCcCCcccCCh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSK-L---GPIFQYLEILGVYHSQSLLILLPSSSV--SFRNLAKLVAFGCKELIHLVTS 217 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~-~---~~~l~~L~~L~l~~c~~l~~~~~~~~~--~~~~L~~L~i~~c~~l~~l~~~ 217 (270)
+++|+.|+++++ ++..+...... . ...+++|++|+++++. ++.++.. .. .+++|++|+++++ +++.+ +
T Consensus 456 l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N-~l~~i--p 529 (636)
T 4eco_A 456 GSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDD-FRATTLPYLVGIDLSYN-SFSKF--P 529 (636)
T ss_dssp TCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGG-GSTTTCTTCCEEECCSS-CCSSC--C
T ss_pred CCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChh-hhhccCCCcCEEECCCC-CCCCc--C
Confidence 678888888877 34433221100 0 0113389999999875 4454333 44 7899999999986 45543 3
Q ss_pred hHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 218 STAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 218 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.....+++|+.|+++++..+..-.... ..+.....+++|+.|++.++.
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLR--EWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCC--CCCTTGGGCSSCCEEECCSSC
T ss_pred hhhhcCCCCCEEECCCCcccccCcccc--cChHHHhcCCCCCEEECCCCc
Confidence 345678999999997765221110000 112222357899999988764
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.04 E-value=5.3e-11 Score=110.08 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=30.1
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhcccccccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL 65 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 65 (270)
.+++|++|+++++.+... + ++..+. .+++|++|++.++ +..........++++|++|
T Consensus 291 ~~~~L~~L~Ls~~~l~~~--~--~~~~~~-~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETE--D--HCTLIQ-KCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp GGGGCCEEEETTCCCCHH--H--HHHHHT-TCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEE
T ss_pred hcCCCcEEecCCCcCCHH--H--HHHHHH-hCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEE
Confidence 356888888888555431 1 111112 6777888777743 2221122223456666655
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.04 E-value=1.5e-11 Score=113.67 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=20.9
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
.+++|++|++++|. +........++++++|++|+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLW 320 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEE
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEe
Confidence 46788888888776 54332233345677776663
No 74
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.03 E-value=9.1e-10 Score=102.42 Aligned_cols=167 Identities=18% Similarity=0.227 Sum_probs=112.6
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|+++++.+..+ | .+. .+++|+.|++++| .+..+++ ++.+++|+.|+ |+++ .++.+.
T Consensus 42 L~~L~~L~l~~n~i~~l------~-~l~-~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~-----Ls~N-~l~~l~ 103 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV------Q-GIQ-YLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLF-----LDEN-KIKDLS 103 (605)
T ss_dssp HTTCCCCBCTTCCCCCC------T-TGG-GCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEE-----CCSS-CCCCCT
T ss_pred CCCCCEEECcCCCCCCC------h-HHc-cCCCCCEEEeeCC-CCCCChh---hccCCCCCEEE-----CcCC-CCCCCh
Confidence 56788888888777653 2 233 7899999999887 4555533 67788887774 4443 233322
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
....+++|+.|++++|. +..++. ...+++|+.|+++++ ++..+
T Consensus 104 ---~l~~l~~L~~L~Ls~N~-l~~l~~-------------------------------l~~l~~L~~L~Ls~N-~l~~l- 146 (605)
T 1m9s_A 104 ---SLKDLKKLKSLSLEHNG-ISDING-------------------------------LVHLPQLESLYLGNN-KITDI- 146 (605)
T ss_dssp ---TSTTCTTCCEEECTTSC-CCCCGG-------------------------------GGGCTTCSEEECCSS-CCCCC-
T ss_pred ---hhccCCCCCEEEecCCC-CCCCcc-------------------------------ccCCCccCEEECCCC-ccCCc-
Confidence 13467888899888884 433321 112788999999888 34433
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.....+++|+.|++++|. +..+.+ ...+++|++|++++| ++.++ +.+..+++|+.|++++|+
T Consensus 147 ----~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N-~i~~l---~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 ----TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKN-HISDL---RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ----GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCBC---GGGTTCTTCSEEECCSEE
T ss_pred ----hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCC-CCCCC---hHHccCCCCCEEEccCCc
Confidence 124458899999999874 444433 567899999999987 45554 346778999999999874
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.03 E-value=2.9e-09 Score=90.81 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=105.6
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.++.+ +. +. .+++|++|+++++. ++.+ + .++.+++|++| +++++. ++.+
T Consensus 61 ~l~~L~~L~L~~n~i~~~------~~-~~-~l~~L~~L~L~~n~-l~~~-~--~~~~l~~L~~L-----~l~~n~-l~~~ 122 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDL------AP-LK-NLTKITELELSGNP-LKNV-S--AIAGLQSIKTL-----DLTSTQ-ITDV 122 (308)
T ss_dssp GCTTCCEEECCSSCCCCC------GG-GT-TCCSCCEEECCSCC-CSCC-G--GGTTCTTCCEE-----ECTTSC-CCCC
T ss_pred ccCCCCEEEccCCcCCCC------hh-Hc-cCCCCCEEEccCCc-CCCc-h--hhcCCCCCCEE-----ECCCCC-CCCc
Confidence 478999999999888763 22 33 89999999999984 6654 2 36788888877 455442 3333
Q ss_pred cCCccccCCCcccEEEeccCCCceeecc-cccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTE-DLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQ 160 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~ 160 (270)
.. ...+++|++|+++++. ++.++. ...+.++.++..--.+.. +.. ...+++|+.|+++++ ++..
T Consensus 123 ~~---l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~---------~~~-l~~l~~L~~L~l~~n-~l~~ 187 (308)
T 1h6u_A 123 TP---LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSD---------LTP-LANLSKLTTLKADDN-KISD 187 (308)
T ss_dssp GG---GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCC---------CGG-GTTCTTCCEEECCSS-CCCC
T ss_pred hh---hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCC---------Chh-hcCCCCCCEEECCCC-ccCc
Confidence 21 3467888888888873 444332 112223322221100100 001 233889999999998 3443
Q ss_pred cccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 161 LCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 161 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
+.. ...+++|++|++++|. +..+. . ...+++|++|++++++
T Consensus 188 ~~~-----l~~l~~L~~L~L~~N~-l~~~~-~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 188 ISP-----LASLPNLIEVHLKNNQ-ISDVS-P-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CGG-----GGGCTTCCEEECTTSC-CCBCG-G-GTTCTTCCEEEEEEEE
T ss_pred Chh-----hcCCCCCCEEEccCCc-cCccc-c-ccCCCCCCEEEccCCe
Confidence 321 3458999999999975 44433 2 5678999999999875
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.02 E-value=1.4e-09 Score=92.74 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=65.0
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccC---cCCcEEEeeCCcCCcccCChhHH
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSF---RNLAKLVAFGCKELIHLVTSSTA 220 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~---~~L~~L~i~~c~~l~~l~~~~~~ 220 (270)
+++|++|+++++ +++.+..........+++|++|+++++. ++...|.....+ ++|++|+++++ +++.+. ..+
T Consensus 196 l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp-~~~- 270 (310)
T 4glp_A 196 FPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVP-KGL- 270 (310)
T ss_dssp SCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCC-SCC-
T ss_pred CCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCchh-hhh-
Confidence 778888888887 4443211100112346889999999865 444433223344 79999999876 455442 222
Q ss_pred hhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 221 KTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 221 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
.++|+.|+++++. +..+.. ...+++|+.|++.+-
T Consensus 271 --~~~L~~L~Ls~N~-l~~~~~---------~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 271 --PAKLRVLDLSSNR-LNRAPQ---------PDELPEVDNLTLDGN 304 (310)
T ss_dssp --CSCCSCEECCSCC-CCSCCC---------TTSCCCCSCEECSST
T ss_pred --cCCCCEEECCCCc-CCCCch---------hhhCCCccEEECcCC
Confidence 2689999999884 443311 124688998888764
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.02 E-value=5.1e-09 Score=86.45 Aligned_cols=176 Identities=17% Similarity=0.189 Sum_probs=103.3
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCC
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPG 84 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~ 84 (270)
+.+++++++.+++. +|.+ ..+++++|++.++ .+..+.+ ..++++++|++| ++++. +++.+...
T Consensus 15 ~~~~l~~~~~~l~~------~p~~---~~~~l~~L~L~~n-~l~~~~~-~~~~~l~~L~~L-----~L~~n-~l~~~~~~ 77 (251)
T 3m19_A 15 GKKEVDCQGKSLDS------VPSG---IPADTEKLDLQST-GLATLSD-ATFRGLTKLTWL-----NLDYN-QLQTLSAG 77 (251)
T ss_dssp GGTEEECTTCCCSS------CCSC---CCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEE-----ECTTS-CCCCCCTT
T ss_pred CCeEEecCCCCccc------cCCC---CCCCCCEEEccCC-CcCccCH-hHhcCcccCCEE-----ECCCC-cCCccCHh
Confidence 45677777766665 4544 3467888888876 4555533 336677777766 45553 34443332
Q ss_pred ccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccc
Q 038160 85 MHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQ 164 (270)
Q Consensus 85 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~ 164 (270)
. ...+++|++|+++++. ++.++.. ....+++|+.|+++++ +++.+..
T Consensus 78 ~-~~~l~~L~~L~L~~n~-l~~~~~~-----------------------------~~~~l~~L~~L~L~~N-~l~~~~~- 124 (251)
T 3m19_A 78 V-FDDLTELGTLGLANNQ-LASLPLG-----------------------------VFDHLTQLDKLYLGGN-QLKSLPS- 124 (251)
T ss_dssp T-TTTCTTCCEEECTTSC-CCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCCCCT-
T ss_pred H-hccCCcCCEEECCCCc-ccccChh-----------------------------HhcccCCCCEEEcCCC-cCCCcCh-
Confidence 1 2357788888888873 4433310 0112667777777776 4443322
Q ss_pred cccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 165 DSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 165 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.....+++|++|+++++ .++.+++.....+++|++|+++++ +++.+. ...+..+++|+.|++++++
T Consensus 125 --~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 125 --GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVP-HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp --TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred --hHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccC-HHHHhCCCCCCEEEeeCCc
Confidence 11234677777877775 355554443556777888887765 344432 2344567777888777754
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.01 E-value=3.1e-09 Score=96.40 Aligned_cols=192 Identities=10% Similarity=-0.019 Sum_probs=119.0
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+++|++|+++++ .+..+++ ..++.+++|++| +|+++. +++..+ ...+++|++|++++| .++.++..
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L-----~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~~~- 98 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELL-----NLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQELLVG- 98 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEE-----ECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEEEEC-
T ss_pred cCCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEE-----EeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCCCCC-
Confidence 4569999999997 5666533 447888988877 566653 443332 356899999999999 46665532
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
+.+..++...-.+. ..+ ...+++|+.|+++++ ++..+.. .....+++|++|+++++. +....+
T Consensus 99 -~~L~~L~L~~N~l~------~~~-----~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~ 161 (487)
T 3oja_A 99 -PSIETLHAANNNIS------RVS-----CSRGQGKKNIYLANN-KITMLRD---LDEGCRSRVQYLDLKLNE-IDTVNF 161 (487)
T ss_dssp -TTCCEEECCSSCCC------CEE-----ECCCSSCEEEECCSS-CCCSGGG---BCGGGGSSEEEEECTTSC-CCEEEG
T ss_pred -CCcCEEECcCCcCC------CCC-----ccccCCCCEEECCCC-CCCCCCc---hhhcCCCCCCEEECCCCC-CCCcCh
Confidence 23333222110000 000 112778889988887 3443322 123457889999998864 443333
Q ss_pred CCc-ccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 192 SSS-VSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 192 ~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
... ..+++|++|+++++. +..+.. ...+++|+.|+++++. +..+.. ....+++|++|++.+.
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~--------~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNF-IYDVKG---QVVFAKLKTLDLSSNK-LAFMGP--------EFQSAAGVTWISLRNN 224 (487)
T ss_dssp GGGGGGTTTCCEEECTTSC-CCEEEC---CCCCTTCCEEECCSSC-CCEECG--------GGGGGTTCSEEECTTS
T ss_pred HHHhhhCCcccEEecCCCc-cccccc---cccCCCCCEEECCCCC-CCCCCH--------hHcCCCCccEEEecCC
Confidence 323 367899999999875 554422 2347889999999984 555421 1225788999988774
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.00 E-value=9.3e-09 Score=93.62 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=33.3
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccC-ChhHHhhccCCcEEEEecCC
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLV-TSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~-~~~~~~~l~~L~~L~i~~c~ 235 (270)
.+++|++|+++++. +....+.....+++|++|+++++. ++.+. .+..+..+++|+.|+++++.
T Consensus 322 ~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 322 KISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred hCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc
Confidence 35666677766654 322223334556667777766653 22211 11234556666666666663
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.00 E-value=6.7e-09 Score=95.66 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=29.4
Q ss_pred cCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 198 RNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 198 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|++|+++++ +++.+. .. +..+++|+.|+++++. +.++.. .....+++|+.|++.+.|
T Consensus 450 ~~L~~L~L~~N-~l~~ip-~~-~~~l~~L~~L~L~~N~-l~~l~~-------~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIP-KD-VTHLQALQELNVASNQ-LKSVPD-------GVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCSEEECCSS-CCCCCC-TT-TTSSCCCSEEECCSSC-CCCCCT-------TSTTTCTTCCCEECCSCC
T ss_pred CcCCEEECCCC-cCcccC-hh-hcCCCCCCEEECCCCC-CCCCCH-------HHHhcCCCCCEEEecCCC
Confidence 45566666554 344321 11 2256666666666653 333311 001246677777776653
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.00 E-value=1.1e-08 Score=95.43 Aligned_cols=76 Identities=22% Similarity=0.122 Sum_probs=55.7
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|+++++ +++.+. ..+++|++|+++++ .++.++. .+++|++|++++| +++.+ +..+..+
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N-~L~~l--p~~l~~l 283 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP-------VLPSELKELMVSGN-RLTSLPM----LPSGLLSLSVYRN-QLTRL--PESLIHL 283 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCCSC--CGGGGGS
T ss_pred CCCCCEEEccCC-ccCcCC-------CCCCcCcEEECCCC-CCCcCCc----ccccCcEEeCCCC-CCCcC--CHHHhhc
Confidence 466777777766 444321 34689999999997 4555532 6789999999987 56654 3446789
Q ss_pred cCCcEEEEecCC
Q 038160 224 VRLVKVQVYGCR 235 (270)
Q Consensus 224 ~~L~~L~i~~c~ 235 (270)
++|+.|++++++
T Consensus 284 ~~L~~L~L~~N~ 295 (622)
T 3g06_A 284 SSETTVNLEGNP 295 (622)
T ss_dssp CTTCEEECCSCC
T ss_pred cccCEEEecCCC
Confidence 999999999986
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.96 E-value=5.4e-09 Score=83.11 Aligned_cols=150 Identities=11% Similarity=0.066 Sum_probs=99.4
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCcee-eccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKI-FTED 110 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~-~~~~ 110 (270)
.+++|++|+++++ .++.++ .+..+++|++| +++++ .++.+. ....+++|++|+++++. ++. .+.
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L-----~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~- 106 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT---GIEYAHNIKDL-----TINNI-HATNYN---PISGLSNLERLRIMGKD-VTSDKIP- 106 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT---TGGGCTTCSEE-----EEESC-CCSCCG---GGTTCTTCCEEEEECTT-CBGGGSC-
T ss_pred hcCCccEEeccCC-CccChH---HHhcCCCCCEE-----EccCC-CCCcch---hhhcCCCCCEEEeECCc-cCcccCh-
Confidence 6788888888876 455443 26677777766 56666 444332 23467889999998874 332 110
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhc
Q 038160 111 LSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILL 190 (270)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 190 (270)
....+++|+.|+++++. +..... .....+++|++|++++|..++.+.
T Consensus 107 -----------------------------~l~~l~~L~~L~Ls~n~-i~~~~~---~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 107 -----------------------------NLSGLTSLTLLDISHSA-HDDSIL---TKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp -----------------------------CCTTCTTCCEEECCSSB-CBGGGH---HHHTTCSSCCEEECCSCTBCCCCG
T ss_pred -----------------------------hhcCCCCCCEEEecCCc-cCcHhH---HHHhhCCCCCEEEccCCCCccccH
Confidence 01227889999998873 332111 123457899999999987666653
Q ss_pred CCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 191 PSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 191 ~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
. ...+++|++|++++|. ++++. ....+++|+.|++++.+
T Consensus 154 -~-l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 154 -P-LKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -G-GGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC-
T ss_pred -h-hcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCcc
Confidence 2 5678999999999874 55542 35778999999998874
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.96 E-value=1.1e-08 Score=86.60 Aligned_cols=176 Identities=23% Similarity=0.145 Sum_probs=105.5
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.+++++|+++++.+..+.. ..+. .+++|++|+++++ .++.+.. .+.+++|++|+ +++. +++.++
T Consensus 30 ~~~l~~L~L~~N~l~~~~~-----~~~~-~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~-----Ls~N-~l~~l~ 93 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSL-----ATLM-PYTRLTQLNLDRA-ELTKLQV---DGTLPVLGTLD-----LSHN-QLQSLP 93 (290)
T ss_dssp CTTCCEEECTTSCCSEEEG-----GGGT-TCTTCCEEECTTS-CCCEEEC---CSCCTTCCEEE-----CCSS-CCSSCC
T ss_pred CCCCCEEEcCCCcCCccCH-----HHhh-cCCCCCEEECCCC-ccCcccC---CCCCCcCCEEE-----CCCC-cCCcCc
Confidence 4689999999988887522 2233 8999999999986 4666544 26788887774 4443 233332
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
. ....+++|++|+++++ +++.++... ...+++|+.|+++++ +++.+.
T Consensus 94 ~--~~~~l~~L~~L~l~~N-~l~~l~~~~-----------------------------~~~l~~L~~L~L~~N-~l~~~~ 140 (290)
T 1p9a_G 94 L--LGQTLPALTVLDVSFN-RLTSLPLGA-----------------------------LRGLGELQELYLKGN-ELKTLP 140 (290)
T ss_dssp C--CTTTCTTCCEEECCSS-CCCCCCSST-----------------------------TTTCTTCCEEECTTS-CCCCCC
T ss_pred h--hhccCCCCCEEECCCC-cCcccCHHH-----------------------------HcCCCCCCEEECCCC-CCCccC
Confidence 2 2246789999999988 355444110 112667777777776 344332
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
. .....+++|+.|+++++. ++.+++.....+++|++|+++++ +++.+. ..+...++|+.+.+++.
T Consensus 141 ~---~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip--~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 141 P---GLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIP--KGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp T---TTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCC--TTTTTTCCCSEEECCSC
T ss_pred h---hhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccC--hhhcccccCCeEEeCCC
Confidence 1 122346677777777653 45554443345677777777754 344332 22334456777777653
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.94 E-value=7.2e-10 Score=94.52 Aligned_cols=204 Identities=13% Similarity=0.011 Sum_probs=117.4
Q ss_pred CCCccEEEEeccccceecccccccCcc--cCcCCCccEEEEecCcCccccCC---chhhccccccceeEeeeEEeccCCC
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAV--FPHFQSLTRLVVWYCDKLKYIFS---ASMIGNLKQLQHLELTTLRLQGLPK 77 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~--~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~L~~L~L~~~~~ 77 (270)
+++|++|+++++.+... .|..+ . .+++|++|+++++. +....+ ...+..+++|++| +++++.
T Consensus 90 ~~~L~~L~l~~n~l~~~-----~~~~~~~~-~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L-----~Ls~n~- 156 (310)
T 4glp_A 90 YSRLKELTLEDLKITGT-----MPPLPLEA-TGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVL-----SIAQAH- 156 (310)
T ss_dssp HSCCCEEEEESCCCBSC-----CCCCSSSC-CCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEE-----EEECCS-
T ss_pred cCceeEEEeeCCEeccc-----hhhhhhhc-cCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEE-----EeeCCC-
Confidence 46799999999877753 23332 3 78999999999974 443222 1223467777766 565553
Q ss_pred cceecCCccccCCCcccEEEeccCCCcee--ecc----cccccccCCCCCCCCCCCCCCCcccccc-ccCcCCCCCCCEE
Q 038160 78 LRCLYPGMHTSEWPALEILSVHRCDKLKI--FTE----DLSQNNENDQLGIPAQQPPLPLEKEGCL-EKHLGKLAMIKEL 150 (270)
Q Consensus 78 L~~~~~~~~~~~~~~L~~L~i~~c~~l~~--~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~c~-e~~~~~~~~L~~L 150 (270)
++..... ....+++|++|+++++.-... ++. ...+.++.+...--.+. . .+.. ......+++|++|
T Consensus 157 l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~---l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 157 SPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---T---PTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp SCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---C---HHHHHHHHHHHTCCCSSE
T ss_pred cchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---c---hHHHHHHHHhcCCCCCEE
Confidence 3333322 223678899999999863221 110 01222333222110000 0 0000 0011236899999
Q ss_pred EecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEE
Q 038160 151 KLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQ 230 (270)
Q Consensus 151 ~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 230 (270)
+++++. +....+..-.....+++|++|+++++. ++.++.. .+++|++|+++++ +++.+. ....+++|+.|+
T Consensus 230 ~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~---~~~~L~~L~Ls~N-~l~~~~---~~~~l~~L~~L~ 300 (310)
T 4glp_A 230 DLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG---LPAKLRVLDLSSN-RLNRAP---QPDELPEVDNLT 300 (310)
T ss_dssp ECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC---CCSCCSCEECCSC-CCCSCC---CTTSCCCCSCEE
T ss_pred ECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCchhhh---hcCCCCEEECCCC-cCCCCc---hhhhCCCccEEE
Confidence 999984 444322111111124799999999875 5555333 2489999999976 455442 256789999999
Q ss_pred EecCC
Q 038160 231 VYGCR 235 (270)
Q Consensus 231 i~~c~ 235 (270)
+++.+
T Consensus 301 L~~N~ 305 (310)
T 4glp_A 301 LDGNP 305 (310)
T ss_dssp CSSTT
T ss_pred CcCCC
Confidence 98874
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.94 E-value=8e-09 Score=86.38 Aligned_cols=177 Identities=18% Similarity=0.111 Sum_probs=99.1
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+++|++|+++++.++.+.. ..+ ..+++|++|+++++ .++.+. ...++++++|++|+ +++. +++.+
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~-----~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~-----l~~n-~l~~~ 115 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIED-----GAY-QSLSHLSTLILTGN-PIQSLA-LGAFSGLSSLQKLV-----AVET-NLASL 115 (276)
T ss_dssp TCTTCSEEECTTCCCCEECT-----TTT-TTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEE-----CTTS-CCCCS
T ss_pred cccCCcEEECCCCcCCccCH-----HHc-cCCcCCCEEECCCC-ccCccC-hhhhcCCccccEEE-----CCCC-Ccccc
Confidence 47899999999988876432 122 27899999999987 455553 33467888888874 4333 22222
Q ss_pred cCCccccCCCcccEEEeccCCCcee--ecccc--cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCC----EEEec
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKI--FTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIK----ELKLY 153 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~--~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~----~L~i~ 153 (270)
... ....+++|++|+++++. ++. +|... .+.++.++..--.+..+ + ......+++|+ +|+++
T Consensus 116 ~~~-~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~------~--~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 116 ENF-PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSI------Y--CTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TTC-CCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEE------C--GGGGHHHHTCTTCCEEEECC
T ss_pred Cch-hcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcC------C--HHHhhhhhhccccceeeecC
Confidence 211 12356777777777764 332 22111 12222222110000000 0 00011133444 77887
Q ss_pred CcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCC
Q 038160 154 RPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGC 208 (270)
Q Consensus 154 ~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c 208 (270)
+. ++..+... .....+|++|+++++. ++.+++.....+++|++|++++.
T Consensus 186 ~n-~l~~~~~~----~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 186 LN-PMNFIQPG----AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SS-CCCEECTT----SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred CC-cccccCcc----ccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 76 34433221 1223489999999875 66665554567899999999954
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.94 E-value=1.3e-09 Score=93.14 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=118.2
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcC-----CCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCC
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHF-----QSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLP 76 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l-----~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~ 76 (270)
.+++|++|+++++.++.+ |..+. .+ ++|++|+++++ .+..+++ ..++.+++|++| ++++..
T Consensus 119 ~l~~L~~L~Ls~N~l~~~------~~~~~-~l~~~~~~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L-----~Ls~N~ 184 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR------DAWLA-ELQQWLKPGLKVLSIAQA-HSLNFSC-EQVRVFPALSTL-----DLSDNP 184 (312)
T ss_dssp CSCCCSEEEEESCBCSSS------SSHHH-HHHTTCCTTCCEEEEESC-SCCCCCT-TTCCCCSSCCEE-----ECCSCT
T ss_pred cCCCccEEEccCCCCcch------hHHHH-HHHHhhcCCCcEEEeeCC-CCccchH-HHhccCCCCCEE-----ECCCCC
Confidence 478999999999888764 22222 33 99999999997 4666543 346788888777 677665
Q ss_pred Ccce--ecCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecC
Q 038160 77 KLRC--LYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYR 154 (270)
Q Consensus 77 ~L~~--~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~ 154 (270)
-... +........+++|++|+++++. ++.++... ......+++|+.|++++
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~--------------------------~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAG-METPSGVC--------------------------SALAAARVQLQGLDLSH 237 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHH--------------------------HHHHHTTCCCSEEECTT
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHH--------------------------HHHHhcCCCCCEEECCC
Confidence 3221 1111111468899999999984 44322100 00011268999999998
Q ss_pred cccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 155 PYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 155 c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
+. +..... ......+++|++|+++++. ++.++.. .. ++|++|+++++ +++.+ +. +..+++|+.|++++.
T Consensus 238 N~-l~~~~~--~~~~~~l~~L~~L~Ls~N~-l~~ip~~-~~--~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 238 NS-LRDAAG--APSCDWPSQLNSLNLSFTG-LKQVPKG-LP--AKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp SC-CCSSCC--CSCCCCCTTCCEEECTTSC-CSSCCSS-CC--SEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTC
T ss_pred Cc-CCcccc--hhhhhhcCCCCEEECCCCc-cChhhhh-cc--CCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCC
Confidence 83 443221 0122347899999999875 5555333 22 89999999976 56665 22 577899999999887
Q ss_pred C
Q 038160 235 R 235 (270)
Q Consensus 235 ~ 235 (270)
+
T Consensus 307 ~ 307 (312)
T 1wwl_A 307 P 307 (312)
T ss_dssp T
T ss_pred C
Confidence 4
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.94 E-value=1e-08 Score=94.45 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE 66 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 66 (270)
+++|++|++++++++.+. |..+. .+++|++|+++++ .++.+.+ +.++++++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~-----~~~~~-~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~ 106 (562)
T 3a79_B 51 PPRTKALSLSQNSISELR-----MPDIS-FLSELRVLRLSHN-RIRSLDF-HVFLFNQDLEYLD 106 (562)
T ss_dssp CTTCCEEECCSSCCCCCC-----GGGTT-TCTTCCEEECCSC-CCCEECT-TTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCCccccC-----hhhhc-cCCCccEEECCCC-CCCcCCH-HHhCCCCCCCEEE
Confidence 367888888887777532 12232 7888888888876 5665533 3367778887776
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.91 E-value=4.4e-08 Score=88.05 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=32.0
Q ss_pred cccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 173 QYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 173 ~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
++|++|+++++. ++.+ +. .+++|++|+++++ +++.+.. .+++|+.|+++++.
T Consensus 317 ~~L~~L~Ls~N~-l~~l-p~---~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 317 PSLEELNVSNNK-LIEL-PA---LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP 368 (454)
T ss_dssp TTCCEEECCSSC-CSCC-CC---CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred CcCCEEECCCCc-cccc-cc---cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC
Confidence 467777777643 3333 22 3577888888766 4444322 35778888888774
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.91 E-value=2e-08 Score=82.91 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=109.1
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.+++++|+++++++..+.. ..+. .+++|++|+++++ .++.+. +..++.+++|++| ++++. +++.+.
T Consensus 34 ~~~l~~L~L~~n~l~~~~~-----~~~~-~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L-----~L~~n-~l~~~~ 99 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSD-----ATFR-GLTKLTWLNLDYN-QLQTLS-AGVFDDLTELGTL-----GLANN-QLASLP 99 (251)
T ss_dssp CTTCCEEECTTSCCCCCCT-----TTTT-TCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEE-----ECTTS-CCCCCC
T ss_pred CCCCCEEEccCCCcCccCH-----hHhc-CcccCCEEECCCC-cCCccC-HhHhccCCcCCEE-----ECCCC-cccccC
Confidence 3579999999988887422 2233 8999999999996 566653 3446788888877 45554 344443
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
... ...+++|++|+++++ +++.++.. ....+++|+.|+++++ +++.+.
T Consensus 100 ~~~-~~~l~~L~~L~L~~N-~l~~~~~~-----------------------------~~~~l~~L~~L~Ls~N-~l~~~~ 147 (251)
T 3m19_A 100 LGV-FDHLTQLDKLYLGGN-QLKSLPSG-----------------------------VFDRLTKLKELRLNTN-QLQSIP 147 (251)
T ss_dssp TTT-TTTCTTCCEEECCSS-CCCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCCCC
T ss_pred hhH-hcccCCCCEEEcCCC-cCCCcChh-----------------------------HhccCCcccEEECcCC-cCCccC
Confidence 322 246789999999998 45544411 1123789999999998 555443
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKE 210 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~ 210 (270)
. .....+++|++|+++++. ++.+.+.....+++|++|++.+++-
T Consensus 148 ~---~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 148 A---GAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp T---TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred H---HHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCce
Confidence 2 123458999999999864 5566555466789999999998753
No 90
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.90 E-value=2.7e-08 Score=90.51 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=68.3
Q ss_pred CCCCCCEEEecCcccccc-cccccccccccccccceEEEecCcchhhhcCCCcccC-cCCcEEEeeCCcCCcccCChhHH
Q 038160 143 KLAMIKELKLYRPYHLKQ-LCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSF-RNLAKLVAFGCKELIHLVTSSTA 220 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-~~L~~L~i~~c~~l~~l~~~~~~ 220 (270)
.+++|+.|+++++. +.. +.. .....+++|++|++++|.-.... +. .+ ++|++|++++| +++.+ + ...
T Consensus 372 ~l~~L~~L~Ls~N~-l~~~l~~---~~~~~l~~L~~L~Ls~N~l~~~~-~~---~l~~~L~~L~Ls~N-~l~~i-p-~~~ 440 (520)
T 2z7x_B 372 QMKSLQQLDISQNS-VSYDEKK---GDCSWTKSLLSLNMSSNILTDTI-FR---CLPPRIKVLDLHSN-KIKSI-P-KQV 440 (520)
T ss_dssp TCTTCCEEECCSSC-CBCCGGG---CSCCCCTTCCEEECCSSCCCGGG-GG---SCCTTCCEEECCSS-CCCCC-C-GGG
T ss_pred hCCCCCEEECCCCc-CCccccc---chhccCccCCEEECcCCCCCcch-hh---hhcccCCEEECCCC-ccccc-c-hhh
Confidence 37888899988874 332 221 12335788999999987633333 22 22 68999999987 45543 2 334
Q ss_pred hhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 221 KTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 221 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
..+++|+.|+++++. +.++... ....+++|++|++.+.|
T Consensus 441 ~~l~~L~~L~L~~N~-l~~l~~~-------~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 441 VKLEALQELNVASNQ-LKSVPDG-------IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GGCTTCCEEECCSSC-CCCCCTT-------TTTTCTTCCEEECCSSC
T ss_pred hcCCCCCEEECCCCc-CCccCHH-------HhccCCcccEEECcCCC
Confidence 488999999999984 5544210 11247888999888764
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.88 E-value=1.1e-09 Score=98.55 Aligned_cols=91 Identities=18% Similarity=0.128 Sum_probs=36.7
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeE--------eeeEEec
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLE--------LTTLRLQ 73 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~--------L~~L~L~ 73 (270)
...+|++|.++++++.. +|..++ .+++|++|++++|. +.+..|.+ ++.+.+|+.++ +++|+++
T Consensus 9 ~~~~L~~L~l~~n~l~~------iP~~i~-~L~~L~~L~l~~n~-~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~ 79 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTE------MPVEAE-NVKSKTEYYNAWSE-WERNAPPG-NGEQREMAVSRLRDCLDRQAHELELN 79 (454)
T ss_dssp --------------------------------CCHHHHHHHHHH-HHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECT
T ss_pred ccccchhhhcccCchhh------CChhHh-cccchhhhhccCCc-ccccCCcc-cccchhcchhhhhhhhccCCCEEEec
Confidence 45788999998887754 566665 89999999998874 44332332 56677664333 3555666
Q ss_pred cCCCcceecCCccccCCCcccEEEeccCCCceeec
Q 038160 74 GLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 74 ~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
++. +++++. ..++|++|+++++ .++.+|
T Consensus 80 ~~~-l~~lp~-----~~~~L~~L~l~~n-~l~~lp 107 (454)
T 1jl5_A 80 NLG-LSSLPE-----LPPHLESLVASCN-SLTELP 107 (454)
T ss_dssp TSC-CSCCCS-----CCTTCSEEECCSS-CCSSCC
T ss_pred CCc-cccCCC-----CcCCCCEEEccCC-cCCccc
Confidence 653 444322 1246666666655 343343
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.88 E-value=2.5e-08 Score=79.22 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=94.5
Q ss_pred ccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccc
Q 038160 57 GNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGC 136 (270)
Q Consensus 57 ~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c 136 (270)
+.+++|++|+ +++. .++.+. ....+++|++|++++| .++.++.
T Consensus 41 ~~l~~L~~L~-----l~~n-~i~~l~---~l~~l~~L~~L~l~~n-~~~~~~~--------------------------- 83 (197)
T 4ezg_A 41 AQMNSLTYIT-----LANI-NVTDLT---GIEYAHNIKDLTINNI-HATNYNP--------------------------- 83 (197)
T ss_dssp HHHHTCCEEE-----EESS-CCSCCT---TGGGCTTCSEEEEESC-CCSCCGG---------------------------
T ss_pred hhcCCccEEe-----ccCC-CccChH---HHhcCCCCCEEEccCC-CCCcchh---------------------------
Confidence 5667777664 4443 233222 1246788999999888 4443321
Q ss_pred cccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCC
Q 038160 137 LEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVT 216 (270)
Q Consensus 137 ~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 216 (270)
...+++|+.|+++++ ++.... ......+++|++|++++|.--... +.....+++|++|++++|..+.++.
T Consensus 84 ----l~~l~~L~~L~l~~n-~l~~~~---~~~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~- 153 (197)
T 4ezg_A 84 ----ISGLSNLERLRIMGK-DVTSDK---IPNLSGLTSLTLLDISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIM- 153 (197)
T ss_dssp ----GTTCTTCCEEEEECT-TCBGGG---SCCCTTCTTCCEEECCSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCG-
T ss_pred ----hhcCCCCCEEEeECC-ccCccc---ChhhcCCCCCCEEEecCCccCcHh-HHHHhhCCCCCEEEccCCCCccccH-
Confidence 122788999999887 333211 112345788999999887533222 2224568899999999887666652
Q ss_pred hhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 217 SSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 217 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
....+++|+.|++++|. +.++. ....+++|++|++.+-
T Consensus 154 --~l~~l~~L~~L~l~~n~-i~~~~---------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 154 --PLKTLPELKSLNIQFDG-VHDYR---------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp --GGGGCSSCCEEECTTBC-CCCCT---------TGGGCSSCCEEEECBC
T ss_pred --hhcCCCCCCEEECCCCC-CcChH---------HhccCCCCCEEEeeCc
Confidence 35778889999998884 44431 1225788888888753
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.87 E-value=4.6e-10 Score=98.60 Aligned_cols=245 Identities=12% Similarity=0.002 Sum_probs=119.2
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecC--cCccccCCchh------hccccccceeEeeeEEecc
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYC--DKLKYIFSASM------IGNLKQLQHLELTTLRLQG 74 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c--~~l~~~~~~~~------~~~l~~L~~L~L~~L~L~~ 74 (270)
+++|++|+|+++++...... .++..+. .+++|++|++++| ..+....|... +..+++|++| ++++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~-~l~~~l~-~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L-----~Ls~ 103 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAAR-WLSENIA-SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV-----RLSD 103 (386)
T ss_dssp CSCCCEEECTTSEECHHHHH-HHHHTTT-TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE-----ECCS
T ss_pred CCCccEEECCCCCCCHHHHH-HHHHHHH-hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE-----ECCC
Confidence 57899999998777653110 0222222 6899999999887 34443323221 3567777766 4444
Q ss_pred CCCcceec---CCccccCCCcccEEEeccCCCcee-----ecccc--c---------ccccCCCCCCCCCCCCCCCcccc
Q 038160 75 LPKLRCLY---PGMHTSEWPALEILSVHRCDKLKI-----FTEDL--S---------QNNENDQLGIPAQQPPLPLEKEG 135 (270)
Q Consensus 75 ~~~L~~~~---~~~~~~~~~~L~~L~i~~c~~l~~-----~~~~~--~---------~~~~~~~~~~~~~~~l~~~~~~~ 135 (270)
+. ++... .......+++|++|++++|. ++. ++... . +.++.+....-. +.. ...+
T Consensus 104 n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~---l~~-~~~~ 177 (386)
T 2ca6_A 104 NA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR---LEN-GSMK 177 (386)
T ss_dssp CC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC---CTG-GGHH
T ss_pred Cc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC---CCc-HHHH
Confidence 32 21100 00011346778888888774 221 11000 0 222222211000 000 0000
Q ss_pred ccccCcCCCCCCCEEEecCccccccccc--ccccccccccccceEEEecCcch----hhhcCCCcccCcCCcEEEeeCCc
Q 038160 136 CLEKHLGKLAMIKELKLYRPYHLKQLCK--QDSKLGPIFQYLEILGVYHSQSL----LILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 136 c~e~~~~~~~~L~~L~i~~c~~l~~~~~--~~~~~~~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
.+......+++|++|++++| ++..... -.......+++|++|++++|.-- ..++ .....+++|++|++++|.
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCcCEEECCCCC
Confidence 00000112678888888887 3331100 00002335678888888887531 2222 224567888888888775
Q ss_pred CCcccCCh---hHH--hhccCCcEEEEecCCCcceEeeccCCCCccce-eecCccCeeecCCCC
Q 038160 210 ELIHLVTS---STA--KTLVRLVKVQVYGCRAMTEVVINDKDGVEKEE-IVFCKLKTLQLFDLD 267 (270)
Q Consensus 210 ~l~~l~~~---~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 267 (270)
+.+.... ... ..+++|+.|++++|. +.+.... ..+... ..+++|++|++.+++
T Consensus 256 -i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~---~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 256 -LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVR---TLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp -CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHH---HHHHHHHHHCTTCCEEECTTSB
T ss_pred -CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHH---HHHHHHHhcCCCceEEEccCCc
Confidence 4433111 112 126788888888884 3321000 001111 136888888887763
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.84 E-value=3.9e-08 Score=91.11 Aligned_cols=227 Identities=15% Similarity=0.032 Sum_probs=126.6
Q ss_pred CCCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.++.|+.+.+.++...... ... .+++|+.+++++..--...........+.+|+.++ +..... ...
T Consensus 347 ~l~~L~~l~l~~n~~~~~~-------~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~-----~~~~~~-~~~ 412 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAF-------SEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD-----LSFNGV-ITM 412 (635)
T ss_dssp BCTTCCEEEEESCCSCCBC-------CCC-BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEE-----CCSCSE-EEE
T ss_pred cchhhhhcccccccCCCCc-------ccc-cccccccchhhccccccccccccchhhhhhhhhhh-----cccccc-ccc
Confidence 3567888888775444321 111 68899999987753322111222345666666663 333221 111
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccc---cccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQ---NNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHL 158 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l 158 (270)
.. ....+++|+.+++.++......+..... .+...+...-.+... ..+....+++++.|+++++...
T Consensus 413 ~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~--------~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 413 SS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--------FNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp CS--CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC--------CTTTTTTCTTCCEEECTTCEEG
T ss_pred cc--cccccccccchhhhhccccccccccccccccccccccccccccccc--------cccccccchhhhhhhhhhcccc
Confidence 11 2245677777777766433322211100 011000000000000 0111223788999999988655
Q ss_pred cccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcc
Q 038160 159 KQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMT 238 (270)
Q Consensus 159 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 238 (270)
..+.. .....+++|++|++++| .++.+.+..+..+++|++|+++++ +++.+.. ..+..+++|+.|+++++. +.
T Consensus 483 ~~~~~---~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~ 555 (635)
T 4g8a_A 483 ENFLP---DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQVLDYSLNH-IM 555 (635)
T ss_dssp GGEEC---SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCC-GGGTTCTTCCEEECTTSC-CC
T ss_pred cccCc---hhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCCh-hHHhCCCCCCEEECCCCc-CC
Confidence 54322 22445889999999997 466666666778899999999976 5666533 445788999999999984 44
Q ss_pred eEeeccCCCCccceeec-CccCeeecCCC
Q 038160 239 EVVINDKDGVEKEEIVF-CKLKTLQLFDL 266 (270)
Q Consensus 239 ~~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 266 (270)
.+.. .....+ ++|++|++.+-
T Consensus 556 ~~~~-------~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 556 TSKK-------QELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp BCCS-------SCTTCCCTTCCEEECTTC
T ss_pred CCCH-------HHHHhhhCcCCEEEeeCC
Confidence 3321 011123 57999988653
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.82 E-value=1.9e-08 Score=84.99 Aligned_cols=167 Identities=18% Similarity=0.202 Sum_probs=114.4
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+++|++|++++| .+..+. .++.+++|++| +++++ +++.+.. ...+++|++|+++++. ++.++.
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~---~~~~l~~L~~L-----~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-- 107 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQ---GIQYLPNVTKL-----FLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLSS-- 107 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCT---TGGGCTTCCEE-----ECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGGG--
T ss_pred hcCcccEEEccCC-CcccCh---hHhcCCCCCEE-----EccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCChh--
Confidence 6889999999987 455552 26778888777 45544 3333332 3568899999999884 444331
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
...+++|+.|+++++ ++..+ .....+++|++|++++|. ++.+
T Consensus 108 -----------------------------l~~l~~L~~L~L~~n-~i~~~-----~~l~~l~~L~~L~l~~n~-l~~~-- 149 (291)
T 1h6t_A 108 -----------------------------LKDLKKLKSLSLEHN-GISDI-----NGLVHLPQLESLYLGNNK-ITDI-- 149 (291)
T ss_dssp -----------------------------GTTCTTCCEEECTTS-CCCCC-----GGGGGCTTCCEEECCSSC-CCCC--
T ss_pred -----------------------------hccCCCCCEEECCCC-cCCCC-----hhhcCCCCCCEEEccCCc-CCcc--
Confidence 122889999999998 45443 123458999999999874 4443
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
.....+++|++|++++| +++++.. ...+++|+.|+++++. +.++.. ...+++|+.|++.+.
T Consensus 150 ~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~-i~~l~~---------l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDLRA---------LAGLKNLDVLELFSQ 210 (291)
T ss_dssp GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG---------GTTCTTCSEEEEEEE
T ss_pred hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCCc-CCCChh---------hccCCCCCEEECcCC
Confidence 23567899999999987 4555432 6788999999999983 554411 124677777776553
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.79 E-value=1.7e-08 Score=93.89 Aligned_cols=167 Identities=18% Similarity=0.199 Sum_probs=114.1
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
.+++|+.|++++| .+..+. .++.+++|+.| +|+++ .++.+.. ...+++|+.|++++|. ++.++.
T Consensus 41 ~L~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L-----~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~-- 104 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSVQ---GIQYLPNVTKL-----FLNGN-KLTDIKP---LTNLKNLGWLFLDENK-IKDLSS-- 104 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCCT---TGGGCTTCCEE-----ECTTS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCTT--
T ss_pred cCCCCCEEECcCC-CCCCCh---HHccCCCCCEE-----EeeCC-CCCCChh---hccCCCCCEEECcCCC-CCCChh--
Confidence 6888999999887 355543 26788888777 45554 2333332 3568899999999883 443321
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
...+++|+.|+++++. +..+ .....+++|+.|++++|. +..+ +
T Consensus 105 -----------------------------l~~l~~L~~L~Ls~N~-l~~l-----~~l~~l~~L~~L~Ls~N~-l~~l-~ 147 (605)
T 1m9s_A 105 -----------------------------LKDLKKLKSLSLEHNG-ISDI-----NGLVHLPQLESLYLGNNK-ITDI-T 147 (605)
T ss_dssp -----------------------------STTCTTCCEEECTTSC-CCCC-----GGGGGCTTCSEEECCSSC-CCCC-G
T ss_pred -----------------------------hccCCCCCEEEecCCC-CCCC-----ccccCCCccCEEECCCCc-cCCc-h
Confidence 1228899999999983 4433 124468999999999974 4443 2
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
....+++|+.|++++| .+..+.. +..+++|+.|++++|. +.++. ....+++|+.|++.++
T Consensus 148 -~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-i~~l~---------~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 148 -VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDLR---------ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp -GGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCG---------GGTTCTTCSEEECCSE
T ss_pred -hhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCCC-CCCCh---------HHccCCCCCEEEccCC
Confidence 3567899999999987 4555422 6789999999999993 55441 1124678888887765
No 97
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.74 E-value=3.9e-09 Score=82.23 Aligned_cols=91 Identities=8% Similarity=0.027 Sum_probs=65.9
Q ss_pred CCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCccc----CcCCcEEEeeCCcCCcccCChhHH
Q 038160 145 AMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVS----FRNLAKLVAFGCKELIHLVTSSTA 220 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~----~~~L~~L~i~~c~~l~~l~~~~~~ 220 (270)
.+|++|++++|. ++.... .....+++|++|++++|..+++..-..... .++|++|++++|.++++.....+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L- 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL- 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-
T ss_pred ceEeEEeCcCCC-ccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-
Confidence 369999999996 443222 223468899999999998877643221222 35799999999999988755444
Q ss_pred hhccCCcEEEEecCCCcceE
Q 038160 221 KTLVRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 221 ~~l~~L~~L~i~~c~~l~~~ 240 (270)
..+++|+.|++++|+.+.+.
T Consensus 136 ~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GGCTTCCEEEEESCTTCCCH
T ss_pred hcCCCCCEEECCCCCCCCch
Confidence 46899999999999988764
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.72 E-value=5.7e-08 Score=80.85 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=36.3
Q ss_pred CCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhcc
Q 038160 145 AMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLV 224 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~ 224 (270)
++|+.|+++++ +++.+. ....+++|++|+++++. ++.+. ....+++|++|+++++ +++++ .....++
T Consensus 106 ~~L~~L~L~~N-~l~~~~-----~l~~l~~L~~L~Ls~N~-i~~~~--~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~ 172 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDTD-----SLIHLKNLEILSIRNNK-LKSIV--MLGFLSKLEVLDLHGN-EITNT---GGLTRLK 172 (263)
T ss_dssp SSCCEEECCSS-CCSBSG-----GGTTCTTCCEEECTTSC-CCBCG--GGGGCTTCCEEECTTS-CCCBC---TTSTTCC
T ss_pred CcccEEEccCC-ccCCCh-----hhcCcccccEEECCCCc-CCCCh--HHccCCCCCEEECCCC-cCcch---HHhccCC
Confidence 45555555555 233220 12235556666665543 33321 1344556666666554 23332 2234555
Q ss_pred CCcEEEEecC
Q 038160 225 RLVKVQVYGC 234 (270)
Q Consensus 225 ~L~~L~i~~c 234 (270)
+|+.|+++++
T Consensus 173 ~L~~L~l~~N 182 (263)
T 1xeu_A 173 KVNWIDLTGQ 182 (263)
T ss_dssp CCCEEEEEEE
T ss_pred CCCEEeCCCC
Confidence 6666666654
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.70 E-value=1e-07 Score=87.89 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=45.7
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCC
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPG 84 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~ 84 (270)
+|++|++++++++. +|.. .+++|++|+++++ .++.++ +.+++|++| ++++. +++.++.
T Consensus 60 ~L~~L~Ls~n~L~~------lp~~---l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L-----~Ls~N-~l~~ip~- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSS------LPDN---LPPQITVLEITQN-ALISLP-----ELPASLEYL-----DACDN-RLSTLPE- 117 (571)
T ss_dssp TCSEEECCSSCCSC------CCSC---CCTTCSEEECCSS-CCSCCC-----CCCTTCCEE-----ECCSS-CCSCCCC-
T ss_pred CccEEEeCCCCCCc------cCHh---HcCCCCEEECcCC-CCcccc-----cccCCCCEE-----EccCC-CCCCcch-
Confidence 67888888877765 4444 3577888888876 455543 345666666 44443 3333222
Q ss_pred ccccCCCcccEEEeccCCCceeec
Q 038160 85 MHTSEWPALEILSVHRCDKLKIFT 108 (270)
Q Consensus 85 ~~~~~~~~L~~L~i~~c~~l~~~~ 108 (270)
. ..+|++|+++++ +++.+|
T Consensus 118 l----~~~L~~L~Ls~N-~l~~lp 136 (571)
T 3cvr_A 118 L----PASLKHLDVDNN-QLTMLP 136 (571)
T ss_dssp C----CTTCCEEECCSS-CCSCCC
T ss_pred h----hcCCCEEECCCC-cCCCCC
Confidence 0 117777887776 354444
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.65 E-value=2.2e-08 Score=83.37 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=87.5
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++++++++.+ | ++. .+++|++|+++++ .++++++ ++.+++|++|+ +++. +++.+.
T Consensus 40 l~~L~~L~l~~n~i~~l------~-~l~-~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~-----L~~N-~l~~l~ 101 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSL------A-GMQ-FFTNLKELHLSHN-QISDLSP---LKDLTKLEELS-----VNRN-RLKNLN 101 (263)
T ss_dssp HTTCSEEECTTSCCCCC------T-TGG-GCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEE-----CCSS-CCSCCT
T ss_pred cCcCcEEECcCCCcccc------h-HHh-hCCCCCEEECCCC-ccCCChh---hccCCCCCEEE-----CCCC-ccCCcC
Confidence 46677777777666542 2 222 6677777777765 4554433 55666666653 3333 222222
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
.. .. ++|++|++++| .++.++. ...+++|+.|+++++ +++.+.
T Consensus 102 ~~---~~-~~L~~L~L~~N-~l~~~~~-------------------------------l~~l~~L~~L~Ls~N-~i~~~~ 144 (263)
T 1xeu_A 102 GI---PS-ACLSRLFLDNN-ELRDTDS-------------------------------LIHLKNLEILSIRNN-KLKSIV 144 (263)
T ss_dssp TC---CC-SSCCEEECCSS-CCSBSGG-------------------------------GTTCTTCCEEECTTS-CCCBCG
T ss_pred cc---cc-CcccEEEccCC-ccCCChh-------------------------------hcCcccccEEECCCC-cCCCCh
Confidence 11 11 66777777776 3333220 123889999999998 355431
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
....+++|++|+++++. ++.. .....+++|+.|++++++
T Consensus 145 -----~l~~l~~L~~L~L~~N~-i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 145 -----MLGFLSKLEVLDLHGNE-ITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp -----GGGGCTTCCEEECTTSC-CCBC--TTSTTCCCCCEEEEEEEE
T ss_pred -----HHccCCCCCEEECCCCc-Ccch--HHhccCCCCCEEeCCCCc
Confidence 24458999999999874 4443 235678999999999864
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.63 E-value=6.2e-07 Score=83.01 Aligned_cols=224 Identities=15% Similarity=0.058 Sum_probs=131.8
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
..+|+.|++.++.+..+ +.. .++.|+.+.+.+... ...+. ...+++|+.++ +++..--....
T Consensus 327 ~~~L~~L~l~~~~~~~~------~~~---~l~~L~~l~l~~n~~-~~~~~---~~~l~~L~~L~-----ls~n~l~~~~~ 388 (635)
T 4g8a_A 327 NFGWQHLELVNCKFGQF------PTL---KLKSLKRLTFTSNKG-GNAFS---EVDLPSLEFLD-----LSRNGLSFKGC 388 (635)
T ss_dssp CCCCSEEEEESCEESSC------CCC---BCTTCCEEEEESCCS-CCBCC---CCBCTTCCEEE-----CCSSCCBEEEE
T ss_pred chhhhhhhcccccccCc------Ccc---cchhhhhcccccccC-CCCcc---cccccccccch-----hhccccccccc
Confidence 46788999988766543 222 688999999987643 22222 34677877773 44332111111
Q ss_pred CCccccCCCcccEEEeccCCCceeecccc--cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQ 160 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~ 160 (270)
.........+|+.+++..+.... .+... .+.++............. .......+++++.++++.+. +..
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~-------~~~~~~~l~~l~~l~ls~n~-l~~ 459 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS-------EFSVFLSLRNLIYLDISHTH-TRV 459 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTT-------SSCTTTTCTTCCEEECTTSC-CEE
T ss_pred cccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccc-------cccccccccccccccccccc-ccc
Confidence 11122356788999888775332 22110 111111111000000000 00111237788888887763 333
Q ss_pred cccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceE
Q 038160 161 LCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 161 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 240 (270)
+.. .....+++|++|+++++.....+.+.....+++|++|++++| +++.+. +..+..+++|+.|+++++. +..+
T Consensus 460 ~~~---~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~-~~~f~~l~~L~~L~Ls~N~-l~~l 533 (635)
T 4g8a_A 460 AFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNSLSSLQVLNMSHNN-FFSL 533 (635)
T ss_dssp CCT---TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTSC-CCBC
T ss_pred ccc---cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcC-hHHHcCCCCCCEEECCCCc-CCCC
Confidence 222 223457899999999998787777776788999999999988 576654 3456789999999999983 5544
Q ss_pred eeccCCCCccceeecCccCeeecCCC
Q 038160 241 VINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 241 ~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
.. .....+++|++|++.+.
T Consensus 534 ~~-------~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 534 DT-------FPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp CC-------GGGTTCTTCCEEECTTS
T ss_pred Ch-------hHHhCCCCCCEEECCCC
Confidence 21 11224688898888764
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.61 E-value=7e-07 Score=72.17 Aligned_cols=151 Identities=14% Similarity=0.171 Sum_probs=89.8
Q ss_pred cEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCcc
Q 038160 7 EALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMH 86 (270)
Q Consensus 7 ~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~ 86 (270)
+++++++++++. +|.. ..+.+++|+++++ .++.+.+...++.+++|++| ++++. +++.+....
T Consensus 14 ~~l~~s~n~l~~------iP~~---~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L-----~L~~N-~i~~i~~~~- 76 (220)
T 2v70_A 14 TTVDCSNQKLNK------IPEH---IPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKI-----NFSNN-KITDIEEGA- 76 (220)
T ss_dssp TEEECCSSCCSS------CCSC---CCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEE-----ECCSS-CCCEECTTT-
T ss_pred CEeEeCCCCccc------CccC---CCCCCCEEEcCCC-cCCccCchhhhccCCCCCEE-----ECCCC-cCCEECHHH-
Confidence 466677766665 4443 3456788888875 56666555556777777776 44443 345544322
Q ss_pred ccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccc
Q 038160 87 TSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDS 166 (270)
Q Consensus 87 ~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~ 166 (270)
...+++|++|+++++. ++.++.. ....+++|+.|+++++ ++..+..
T Consensus 77 ~~~l~~L~~L~Ls~N~-l~~~~~~-----------------------------~~~~l~~L~~L~Ls~N-~l~~~~~--- 122 (220)
T 2v70_A 77 FEGASGVNEILLTSNR-LENVQHK-----------------------------MFKGLESLKTLMLRSN-RITCVGN--- 122 (220)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCGG-----------------------------GGTTCSSCCEEECTTS-CCCCBCT---
T ss_pred hCCCCCCCEEECCCCc-cCccCHh-----------------------------HhcCCcCCCEEECCCC-cCCeECH---
Confidence 2457778888888773 4433310 0122677888888776 3433322
Q ss_pred cccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 167 KLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 167 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
.....+++|++|+++++ .++.+.+.....+++|++|++.+.+
T Consensus 123 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 12334677888888775 3555545445667778888777654
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.59 E-value=3.2e-09 Score=95.03 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=42.9
Q ss_pred ccccceEEEecCcchhhh-----cCCCcccCcCCcEEEeeCCcCCcccC---ChhHHhhccCCcEEEEecCCCcceEeec
Q 038160 172 FQYLEILGVYHSQSLLIL-----LPSSSVSFRNLAKLVAFGCKELIHLV---TSSTAKTLVRLVKVQVYGCRAMTEVVIN 243 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~-----~~~~~~~~~~L~~L~i~~c~~l~~l~---~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 243 (270)
+++|++|++++|. +.+. .+.....+++|++|++++| ++.+.. .......+++|++|+++++. +.+....
T Consensus 226 ~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~ 302 (461)
T 1z7x_W 226 KASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGAR 302 (461)
T ss_dssp CTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHH
T ss_pred CCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHH
Confidence 4666666666653 2221 1111123566777777766 444321 11223446677777777763 3221000
Q ss_pred cCCCCccc-eeecCccCeeecCCCC
Q 038160 244 DKDGVEKE-EIVFCKLKTLQLFDLD 267 (270)
Q Consensus 244 ~~~~~~~~-~~~~~~L~~L~l~~~~ 267 (270)
. .... ....++|++|++.+|.
T Consensus 303 ~---l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 303 L---LCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp H---HHHHHTSTTCCCCEEECTTSC
T ss_pred H---HHHHhccCCccceeeEcCCCC
Confidence 0 0000 0012588888888774
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.59 E-value=2.7e-07 Score=73.68 Aligned_cols=150 Identities=21% Similarity=0.159 Sum_probs=89.9
Q ss_pred cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeecccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDL 111 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 111 (270)
..++|++|+++++ .++.+ +...++.+++|++| ++++. +++.+.... ...+++|++|+++++. ++.++..
T Consensus 26 ~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L-----~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~- 94 (208)
T 2o6s_A 26 IPAQTTYLDLETN-SLKSL-PNGVFDELTSLTQL-----YLGGN-KLQSLPNGV-FNKLTSLTYLNLSTNQ-LQSLPNG- 94 (208)
T ss_dssp CCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEE-----ECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTT-
T ss_pred CCCCCcEEEcCCC-ccCcC-ChhhhcccccCcEE-----ECCCC-ccCccChhh-cCCCCCcCEEECCCCc-CCccCHh-
Confidence 4568888888886 45554 33345677777776 45443 344433321 2357888888888873 4443310
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC
Q 038160 112 SQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP 191 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 191 (270)
....+++|+.|+++++ ++..+.. .....+++|++|+++++. ++.+.+
T Consensus 95 ----------------------------~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~l~~N~-l~~~~~ 141 (208)
T 2o6s_A 95 ----------------------------VFDKLTQLKELALNTN-QLQSLPD---GVFDKLTQLKDLRLYQNQ-LKSVPD 141 (208)
T ss_dssp ----------------------------TTTTCTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred ----------------------------HhcCccCCCEEEcCCC-cCcccCH---hHhccCCcCCEEECCCCc-cceeCH
Confidence 0122778888888876 3443322 123457888888888863 555544
Q ss_pred CCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 192 SSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 192 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
.....+++|++|++.+++-. ..+++|+.|.++..
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWIN 175 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBC---------CCTTTTHHHHHHHH
T ss_pred HHhccCCCccEEEecCCCee---------cCCCCHHHHHHHHH
Confidence 44566788888888876421 23445555555554
No 105
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=3.2e-07 Score=78.68 Aligned_cols=102 Identities=13% Similarity=-0.043 Sum_probs=70.4
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCc-EEEeeCCcCCcccCChhHHhh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLA-KLVAFGCKELIHLVTSSTAKT 222 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~-~L~i~~c~~l~~l~~~~~~~~ 222 (270)
+++|+++++.+. +++.+.. .+...+++|+++++.+ +++.+....+..+++|+ ++.+.+ +++.+. ...+..
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~---~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~-~~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPD---FTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIE-FGAFMG 295 (329)
T ss_dssp CTTCCEEECTTB-CCCEECT---TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEEC-TTTTTT
T ss_pred cCCCeEEECCCC-CcceecH---hhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEc-hhhhhC
Confidence 778999999876 3555432 2345678999999986 37777666667888999 999987 676653 356678
Q ss_pred ccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeee
Q 038160 223 LVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQ 262 (270)
Q Consensus 223 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 262 (270)
|++|+.+++.+. ++..+.. .....+++|+++.
T Consensus 296 c~~L~~l~l~~n-~i~~I~~-------~aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATGD-KITTLGD-------ELFGNGVPSKLIY 327 (329)
T ss_dssp CTTEEEEEECSS-CCCEECT-------TTTCTTCCCCEEE
T ss_pred CccCCEEEeCCC-ccCccch-------hhhcCCcchhhhc
Confidence 999999998665 4666621 1112456777664
No 106
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.58 E-value=1.7e-09 Score=96.85 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=43.4
Q ss_pred CCCCEEEecCccccccccccc-ccccccccccceEEEecCcchhhhcCCCc-----ccCcCCcEEEeeCCcCCccc---C
Q 038160 145 AMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLLILLPSSS-----VSFRNLAKLVAFGCKELIHL---V 215 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~l---~ 215 (270)
++|++|++++|. +....... ......+++|++|+++++. +.+..+... ...++|++|++++| ++.+. .
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 389 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS 389 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred ccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHH
Confidence 466666666663 22110000 0011234677777777763 333211100 11467777777776 34421 1
Q ss_pred ChhHHhhccCCcEEEEecCC
Q 038160 216 TSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 216 ~~~~~~~l~~L~~L~i~~c~ 235 (270)
.+.....+++|++|++++|+
T Consensus 390 l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHhCCCccEEECCCCC
Confidence 12234556777777777773
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.58 E-value=3.4e-08 Score=86.63 Aligned_cols=218 Identities=17% Similarity=0.105 Sum_probs=109.9
Q ss_pred CCCCccEEEEeccccceecccccccCcc------cCcCCCccEEEEecCcCccccC---CchhhccccccceeEeeeEEe
Q 038160 2 ALPNLEALEISAINVDKIWHYNQIPAAV------FPHFQSLTRLVVWYCDKLKYIF---SASMIGNLKQLQHLELTTLRL 72 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~~~~~~~~~p~~~------~~~l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~L~~L~L 72 (270)
.+++|++|+|+++.+..+... +|.++ +..+++|++|+++++. +.... .+..++.+++|++| ++
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~--~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L-----~L 129 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDE--IPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHL-----YL 129 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGG--SHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEE-----EC
T ss_pred hCCCccEEeCcccccCccccc--hhHHHHHHHHHHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEE-----EC
Confidence 478999999988555443221 33332 0168999999998873 44310 12235677887777 45
Q ss_pred ccCCCcceecCCc---cccCC---------CcccEEEeccCCCce--eecc---c--ccccccCCCCCCCCCCCCCCCcc
Q 038160 73 QGLPKLRCLYPGM---HTSEW---------PALEILSVHRCDKLK--IFTE---D--LSQNNENDQLGIPAQQPPLPLEK 133 (270)
Q Consensus 73 ~~~~~L~~~~~~~---~~~~~---------~~L~~L~i~~c~~l~--~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~ 133 (270)
+++. ++...... ....+ ++|++|++++|. ++ .++. . ..+.++.+...--.+ .....
T Consensus 130 ~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l---~~~g~ 204 (386)
T 2ca6_A 130 HNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGI---RPEGI 204 (386)
T ss_dssp CSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCC---CHHHH
T ss_pred cCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCCC---CHhHH
Confidence 5542 21110000 00011 677777777764 22 1110 0 011222211100000 00000
Q ss_pred ccccccCcCCCCCCCEEEecCccccccccccc-ccccccccccceEEEecCcchhhh----cCCCc--ccCcCCcEEEee
Q 038160 134 EGCLEKHLGKLAMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLLIL----LPSSS--VSFRNLAKLVAF 206 (270)
Q Consensus 134 ~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~----~~~~~--~~~~~L~~L~i~ 206 (270)
..-.......+++|+.|+++++. +....... ......+++|++|++++|. +... .+... ..+++|++|+++
T Consensus 205 ~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 205 EHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp HHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred HHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECc
Confidence 00000012237899999999884 42100000 0113357889999999886 3221 01112 237899999999
Q ss_pred CCcCCcc----cCChhHHhhccCCcEEEEecCC
Q 038160 207 GCKELIH----LVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 207 ~c~~l~~----l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
+|. +.. .+...+..++++|+.|++++|+
T Consensus 283 ~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 283 YNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 874 444 1222333668999999999985
No 108
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=2.8e-08 Score=77.33 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=64.6
Q ss_pred cccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHh---hccCCcEEEEecCCCcceEeeccCCCCc
Q 038160 173 QYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAK---TLVRLVKVQVYGCRAMTEVVINDKDGVE 249 (270)
Q Consensus 173 ~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~---~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 249 (270)
.+|++|++++|. +++........+++|++|++++|.++++-....+.. .+++|+.|++++|+++++.....
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~----- 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA----- 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-----
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-----
Confidence 468999999987 655433334578899999999999888865444433 24579999999998887653211
Q ss_pred cceeecCccCeeecCCCCCCC
Q 038160 250 KEEIVFCKLKTLQLFDLDSLT 270 (270)
Q Consensus 250 ~~~~~~~~L~~L~l~~~~~L~ 270 (270)
...+++|++|++.+||++|
T Consensus 135 --L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 --LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp --GGGCTTCCEEEEESCTTCC
T ss_pred --HhcCCCCCEEECCCCCCCC
Confidence 1247899999999998875
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.56 E-value=1.2e-06 Score=69.90 Aligned_cols=84 Identities=23% Similarity=0.322 Sum_probs=42.8
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.++|++|++++++++.+ |...+..+++|++|+++++ .++.+ +...++.+++|++| ++++. +++.+.
T Consensus 27 ~~~l~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L-----~Ls~n-~l~~~~ 92 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL------PNGVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYL-----NLSTN-QLQSLP 92 (208)
T ss_dssp CTTCSEEECCSSCCCCC------CTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEE-----ECCSS-CCCCCC
T ss_pred CCCCcEEEcCCCccCcC------ChhhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEE-----ECCCC-cCCccC
Confidence 34566777766666542 2222225667777777664 44444 22334556666555 34333 233322
Q ss_pred CCccccCCCcccEEEeccC
Q 038160 83 PGMHTSEWPALEILSVHRC 101 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c 101 (270)
... ...+++|++|+++++
T Consensus 93 ~~~-~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 93 NGV-FDKLTQLKELALNTN 110 (208)
T ss_dssp TTT-TTTCTTCCEEECCSS
T ss_pred HhH-hcCccCCCEEEcCCC
Confidence 211 134566777776665
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.54 E-value=8.7e-08 Score=73.92 Aligned_cols=111 Identities=20% Similarity=0.185 Sum_probs=65.5
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|++.++. ++.+ .....+++|++|++++|. +....+.....+++|++|+++++ +++.+.....+..+
T Consensus 48 l~~L~~L~l~~n~-l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l 119 (168)
T 2ell_A 48 FVNLEFLSLINVG-LISV-----SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKL 119 (168)
T ss_dssp GGGCCEEEEESSC-CCCC-----SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSC
T ss_pred CCCCCEEeCcCCC-CCCh-----hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcC
Confidence 6778888888774 5443 123457788888888765 33322332344788888888876 45554322445677
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
++|+.|++++++ +.++... .......+|+|++|++.+++
T Consensus 120 ~~L~~L~l~~N~-l~~~~~~----~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 120 ECLKSLDLFNCE-VTNLNDY----RESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SCCCEEECCSSG-GGTSTTH----HHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEEeeCCc-CcchHHH----HHHHHHhCccCcEecCCCCC
Confidence 888888888874 3322100 00011246778888777664
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.52 E-value=1.4e-06 Score=70.70 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=85.9
Q ss_pred ccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCc
Q 038160 25 IPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKL 104 (270)
Q Consensus 25 ~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l 104 (270)
+|.+ ..++|++|+++++ .+..+.+ ..++++++|++| ++++.. ++.+... ....+++|+.|+++++ ++
T Consensus 34 ip~~---~~~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L-----~L~~N~-l~~i~~~-~~~~l~~L~~L~Ls~N-~l 100 (229)
T 3e6j_A 34 VPAG---IPTNAQILYLHDN-QITKLEP-GVFDSLINLKEL-----YLGSNQ-LGALPVG-VFDSLTQLTVLDLGTN-QL 100 (229)
T ss_dssp CCSC---CCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEE-----ECCSSC-CCCCCTT-TTTTCTTCCEEECCSS-CC
T ss_pred cCCC---CCCCCCEEEcCCC-ccCccCH-HHhhCccCCcEE-----ECCCCC-CCCcChh-hcccCCCcCEEECCCC-cC
Confidence 4554 4588999999886 4555533 336677777777 444432 3333322 1235788888888887 45
Q ss_pred eeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCc
Q 038160 105 KIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQ 184 (270)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 184 (270)
+.++.. ....+++|+.|+++++ ++..+.. ....+++|++|+++++
T Consensus 101 ~~l~~~-----------------------------~~~~l~~L~~L~Ls~N-~l~~lp~----~~~~l~~L~~L~L~~N- 145 (229)
T 3e6j_A 101 TVLPSA-----------------------------VFDRLVHLKELFMCCN-KLTELPR----GIERLTHLTHLALDQN- 145 (229)
T ss_dssp CCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCSCCT----TGGGCTTCSEEECCSS-
T ss_pred CccChh-----------------------------HhCcchhhCeEeccCC-cccccCc----ccccCCCCCEEECCCC-
Confidence 544411 0122778888888887 4554321 2345788888888875
Q ss_pred chhhhcCCCcccCcCCcEEEeeCCc
Q 038160 185 SLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 185 ~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
.++.+.+.....+++|++|++.+.+
T Consensus 146 ~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 146 QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 4555554445668888888888765
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.52 E-value=1.6e-06 Score=69.96 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=85.3
Q ss_pred EEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccc
Q 038160 8 ALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHT 87 (270)
Q Consensus 8 ~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~ 87 (270)
.++.++++++. +|.. -.++|++|++.++ .++.+++ ..++.+++|+.| ++++. +++.+.+.. .
T Consensus 15 ~v~c~~~~l~~------iP~~---l~~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L-----~Ls~N-~i~~~~~~~-~ 76 (220)
T 2v9t_B 15 IVDCRGKGLTE------IPTN---LPETITEIRLEQN-TIKVIPP-GAFSPYKKLRRI-----DLSNN-QISELAPDA-F 76 (220)
T ss_dssp EEECTTSCCSS------CCSS---CCTTCCEEECCSS-CCCEECT-TSSTTCTTCCEE-----ECCSS-CCCEECTTT-T
T ss_pred EEEcCCCCcCc------CCCc---cCcCCCEEECCCC-cCCCcCH-hHhhCCCCCCEE-----ECCCC-cCCCcCHHH-h
Confidence 44555555554 4443 3467888888775 4655533 335667777666 44443 344443322 2
Q ss_pred cCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccccccccc
Q 038160 88 SEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSK 167 (270)
Q Consensus 88 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~ 167 (270)
..+++|++|+++++ .++.++.. ....+++|+.|+++++ ++..+.. .
T Consensus 77 ~~l~~L~~L~Ls~N-~l~~l~~~-----------------------------~f~~l~~L~~L~L~~N-~l~~~~~---~ 122 (220)
T 2v9t_B 77 QGLRSLNSLVLYGN-KITELPKS-----------------------------LFEGLFSLQLLLLNAN-KINCLRV---D 122 (220)
T ss_dssp TTCSSCCEEECCSS-CCCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCCCCCT---T
T ss_pred hCCcCCCEEECCCC-cCCccCHh-----------------------------HccCCCCCCEEECCCC-CCCEeCH---H
Confidence 35677888888777 34444411 0122677888888776 3443322 1
Q ss_pred ccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 168 LGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 168 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
....+++|++|+++++. ++.+.+.....+++|++|++.+.+
T Consensus 123 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 23346778888887753 555444445567778888887654
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.51 E-value=2.9e-07 Score=70.90 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=73.8
Q ss_pred cCCCccEEEEecCcCcc--ccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCcee-ec
Q 038160 32 HFQSLTRLVVWYCDKLK--YIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKI-FT 108 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~-~~ 108 (270)
..++|++|++++|. +. .++.. ++.+++|+.| +++++. ++.+ .....+++|++|++++|. ++. ++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~--~~~l~~L~~L-----~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGL--TAEFVNLEFL-----SLINVG-LISV---SNLPKLPKLKKLELSENR-IFGGLD 88 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSC--CGGGGGCCEE-----EEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSCCC
T ss_pred CcccCCEEECCCCC-CChhhHHHH--HHhCCCCCEE-----eCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchHHH
Confidence 45677777777764 43 33222 4566666655 444443 3333 222456777777777774 322 22
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhh
Q 038160 109 EDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLI 188 (270)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 188 (270)
. ....+++|+.|+++++ +++.+.. ......+++|++|++++++ +..
T Consensus 89 ~------------------------------~~~~l~~L~~L~Ls~N-~l~~~~~--~~~l~~l~~L~~L~l~~N~-l~~ 134 (168)
T 2ell_A 89 M------------------------------LAEKLPNLTHLNLSGN-KLKDIST--LEPLKKLECLKSLDLFNCE-VTN 134 (168)
T ss_dssp H------------------------------HHHHCTTCCEEECBSS-SCCSSGG--GGGGSSCSCCCEEECCSSG-GGT
T ss_pred H------------------------------HHhhCCCCCEEeccCC-ccCcchh--HHHHhcCCCCCEEEeeCCc-Ccc
Confidence 1 0112667778887777 4443311 0123346788888888764 444
Q ss_pred hcC---CCcccCcCCcEEEeeCCcC
Q 038160 189 LLP---SSSVSFRNLAKLVAFGCKE 210 (270)
Q Consensus 189 ~~~---~~~~~~~~L~~L~i~~c~~ 210 (270)
.++ .....+++|++|++.+|..
T Consensus 135 ~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 135 LNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp STTHHHHHHTTCSSCCEETTEETTS
T ss_pred hHHHHHHHHHhCccCcEecCCCCCh
Confidence 333 1355688888888888753
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.51 E-value=7.4e-07 Score=82.19 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=99.5
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|++++++++. +| + .+++|++|+++++ .++.++. +++ +|++| ++++. +++.++
T Consensus 79 ~~~L~~L~Ls~N~l~~------ip-~---~l~~L~~L~Ls~N-~l~~ip~---l~~--~L~~L-----~Ls~N-~l~~lp 136 (571)
T 3cvr_A 79 PPQITVLEITQNALIS------LP-E---LPASLEYLDACDN-RLSTLPE---LPA--SLKHL-----DVDNN-QLTMLP 136 (571)
T ss_dssp CTTCSEEECCSSCCSC------CC-C---CCTTCCEEECCSS-CCSCCCC---CCT--TCCEE-----ECCSS-CCSCCC
T ss_pred cCCCCEEECcCCCCcc------cc-c---ccCCCCEEEccCC-CCCCcch---hhc--CCCEE-----ECCCC-cCCCCC
Confidence 5789999999998875 56 3 6899999999997 5666533 333 66655 56554 344433
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
. .+++|+.|+++++. ++.+|. .+++|+.|+++++ ++..+.
T Consensus 137 ~-----~l~~L~~L~Ls~N~-l~~lp~---------------------------------~l~~L~~L~Ls~N-~L~~lp 176 (571)
T 3cvr_A 137 E-----LPALLEYINADNNQ-LTMLPE---------------------------------LPTSLEVLSVRNN-QLTFLP 176 (571)
T ss_dssp C-----CCTTCCEEECCSSC-CSCCCC---------------------------------CCTTCCEEECCSS-CCSCCC
T ss_pred C-----cCccccEEeCCCCc-cCcCCC---------------------------------cCCCcCEEECCCC-CCCCcc
Confidence 2 47899999999884 554541 1567888888777 344321
Q ss_pred cccccccccccccceEEEecCcchhhhcCCCcccCcCC-------cEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNL-------AKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L-------~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
. . .++|++|+++++ .++.++. .. .+| +.|+++++ +++.+ + ..+..+++|+.|++++++
T Consensus 177 ~-----l--~~~L~~L~Ls~N-~L~~lp~--~~--~~L~~~~~~L~~L~Ls~N-~l~~l-p-~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 177 E-----L--PESLEALDVSTN-LLESLPA--VP--VRNHHSEETEIFFRCREN-RITHI-P-ENILSLDPTCTIILEDNP 241 (571)
T ss_dssp C-----C--CTTCCEEECCSS-CCSSCCC--CC----------CCEEEECCSS-CCCCC-C-GGGGGSCTTEEEECCSSS
T ss_pred h-----h--hCCCCEEECcCC-CCCchhh--HH--HhhhcccccceEEecCCC-cceec-C-HHHhcCCCCCEEEeeCCc
Confidence 1 1 167888888876 3444432 11 256 78888765 45543 2 223447888888888875
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.49 E-value=6.5e-09 Score=96.00 Aligned_cols=204 Identities=15% Similarity=0.124 Sum_probs=120.1
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcC------------ccccCCchhhccccccceeE-eee
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDK------------LKYIFSASMIGNLKQLQHLE-LTT 69 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~------------l~~~~~~~~~~~l~~L~~L~-L~~ 69 (270)
.++|+.|+++++.++. +|..+. .+++|+.|+++++.. .... .+..++++++|+.|+ +..
T Consensus 348 ~~~L~~L~Ls~n~L~~------Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 348 DEQLFRCELSVEKSTV------LQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp TTTSSSCCCCHHHHHH------HHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGH
T ss_pred CccceeccCChhhHHh------hHHHHH-HHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhh
Confidence 4667777777777765 444455 777888877755431 1111 223355666666653 111
Q ss_pred EEeccCCCcceecCCc---cccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCC
Q 038160 70 LRLQGLPKLRCLYPGM---HTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAM 146 (270)
Q Consensus 70 L~L~~~~~L~~~~~~~---~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~ 146 (270)
-.+ .+|+...... .......|+.|+++++ +++.+|. ...+++
T Consensus 420 n~~---~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-------------------------------~~~l~~ 464 (567)
T 1dce_A 420 AYL---DDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-------------------------------LEQLLL 464 (567)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-------------------------------GGGGTT
T ss_pred ccc---chhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-------------------------------cccccc
Confidence 001 1111110000 0011235788888887 4554441 122788
Q ss_pred CCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCC
Q 038160 147 IKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRL 226 (270)
Q Consensus 147 L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 226 (270)
|+.|+++++ +++.+. .....+++|++|+++++. ++.++ ....+++|++|+++++ +++.+..+..+..+++|
T Consensus 465 L~~L~Ls~N-~l~~lp----~~~~~l~~L~~L~Ls~N~-l~~lp--~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 465 VTHLDLSHN-RLRALP----PALAALRCLEVLQASDNA-LENVD--GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp CCEEECCSS-CCCCCC----GGGGGCTTCCEEECCSSC-CCCCG--GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTC
T ss_pred CcEeecCcc-cccccc----hhhhcCCCCCEEECCCCC-CCCCc--ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCC
Confidence 999999988 455442 234568999999999864 55553 3678999999999976 56665424556889999
Q ss_pred cEEEEecCCCcceEeeccCCCCccceeecCccCeeec
Q 038160 227 VKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQL 263 (270)
Q Consensus 227 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 263 (270)
+.|++++++ +..+.. ........+|+|+.|.+
T Consensus 536 ~~L~L~~N~-l~~~~~----~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 536 VLLNLQGNS-LCQEEG----IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECTTSG-GGGSSS----CTTHHHHHCTTCSEEEC
T ss_pred CEEEecCCc-CCCCcc----HHHHHHHHCcccCccCC
Confidence 999999985 433311 11111124789988853
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.49 E-value=1.5e-06 Score=75.43 Aligned_cols=173 Identities=16% Similarity=0.096 Sum_probs=99.9
Q ss_pred cEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhc-cccccceeEeeeEEeccCCCcceecCCc
Q 038160 7 EALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIG-NLKQLQHLELTTLRLQGLPKLRCLYPGM 85 (270)
Q Consensus 7 ~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~-~l~~L~~L~L~~L~L~~~~~L~~~~~~~ 85 (270)
+++++.+++++. +|.. ..++++.|+++++ .++.+.+. .+. ++++|++| +|++. +++.+....
T Consensus 21 ~~l~c~~~~l~~------iP~~---~~~~l~~L~Ls~N-~l~~l~~~-~~~~~l~~L~~L-----~L~~N-~i~~i~~~~ 83 (361)
T 2xot_A 21 NILSCSKQQLPN------VPQS---LPSYTALLDLSHN-NLSRLRAE-WTPTRLTNLHSL-----LLSHN-HLNFISSEA 83 (361)
T ss_dssp TEEECCSSCCSS------CCSS---CCTTCSEEECCSS-CCCEECTT-SSSSCCTTCCEE-----ECCSS-CCCEECTTT
T ss_pred CEEEeCCCCcCc------cCcc---CCCCCCEEECCCC-CCCccChh-hhhhcccccCEE-----ECCCC-cCCccChhh
Confidence 355566666654 4544 3456888888875 56665443 233 67777766 45443 445544322
Q ss_pred cccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccccccc
Q 038160 86 HTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQD 165 (270)
Q Consensus 86 ~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~ 165 (270)
...+++|+.|+++++. ++.++.. ....+++|+.|+++++ ++..+..
T Consensus 84 -~~~l~~L~~L~Ls~N~-l~~~~~~-----------------------------~~~~l~~L~~L~L~~N-~i~~~~~-- 129 (361)
T 2xot_A 84 -FVPVPNLRYLDLSSNH-LHTLDEF-----------------------------LFSDLQALEVLLLYNN-HIVVVDR-- 129 (361)
T ss_dssp -TTTCTTCCEEECCSSC-CCEECTT-----------------------------TTTTCTTCCEEECCSS-CCCEECT--
T ss_pred -ccCCCCCCEEECCCCc-CCcCCHH-----------------------------HhCCCcCCCEEECCCC-cccEECH--
Confidence 2357788888888873 5555411 0122678888888877 3443321
Q ss_pred ccccccccccceEEEecCcchhhhcCCCc---ccCcCCcEEEeeCCcCCcccCChhHHhhccC--CcEEEEecC
Q 038160 166 SKLGPIFQYLEILGVYHSQSLLILLPSSS---VSFRNLAKLVAFGCKELIHLVTSSTAKTLVR--LVKVQVYGC 234 (270)
Q Consensus 166 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~---~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~--L~~L~i~~c 234 (270)
.....+++|++|+++++. ++.++.... ..+++|+.|+++++ +++.+ ....+..+++ ++.|++.+.
T Consensus 130 -~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 130 -NAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKL-PLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp -TTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCC-CHHHHHHSCHHHHTTEECCSS
T ss_pred -HHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCcc-CHHHhhhccHhhcceEEecCC
Confidence 223457888888888753 444433311 45788888888865 45543 2334455555 367777774
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.47 E-value=6.7e-07 Score=77.74 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=97.6
Q ss_pred CCCccEEEEeccccceecccccccCcccC-cCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFP-HFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
.+.+++|+|++++++.+.. ..+. .+++|++|+++++ .++.+.+ ..++++++|++| +|++. +++.+
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~------~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L-----~Ls~N-~l~~~ 103 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRA------EWTPTRLTNLHSLLLSHN-HLNFISS-EAFVPVPNLRYL-----DLSSN-HLHTL 103 (361)
T ss_dssp CTTCSEEECCSSCCCEECT------TSSSSCCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEE-----ECCSS-CCCEE
T ss_pred CCCCCEEECCCCCCCccCh------hhhhhcccccCEEECCCC-cCCccCh-hhccCCCCCCEE-----ECCCC-cCCcC
Confidence 3568999999999987543 2222 6899999999986 5776643 346788888877 55554 35655
Q ss_pred cCCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccc
Q 038160 82 YPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQL 161 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~ 161 (270)
.... ...+++|+.|+++++. ++.++.. ....+++|+.|+++++ ++..+
T Consensus 104 ~~~~-~~~l~~L~~L~L~~N~-i~~~~~~-----------------------------~~~~l~~L~~L~L~~N-~l~~l 151 (361)
T 2xot_A 104 DEFL-FSDLQALEVLLLYNNH-IVVVDRN-----------------------------AFEDMAQLQKLYLSQN-QISRF 151 (361)
T ss_dssp CTTT-TTTCTTCCEEECCSSC-CCEECTT-----------------------------TTTTCTTCCEEECCSS-CCCSC
T ss_pred CHHH-hCCCcCCCEEECCCCc-ccEECHH-----------------------------HhCCcccCCEEECCCC-cCCee
Confidence 4432 2467899999999984 4444311 0122778888888876 44443
Q ss_pred ccccccccccccccceEEEecCcchhhhcCCCcccCcC--CcEEEeeCCc
Q 038160 162 CKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRN--LAKLVAFGCK 209 (270)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~--L~~L~i~~c~ 209 (270)
....-.....+++|++|+++++. ++.+++.....+++ ++.|++.+.+
T Consensus 152 ~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 152 PVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCC
Confidence 22110001347788888888753 44433222333444 3667777643
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.45 E-value=1.5e-08 Score=88.16 Aligned_cols=213 Identities=15% Similarity=0.011 Sum_probs=104.7
Q ss_pred CCccEEEEeccccceecccccccCcccCcCC-CccEEEEecCcCccccCCchhhccc-----cccceeEeeeEEeccCCC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQ-SLTRLVVWYCDKLKYIFSASMIGNL-----KQLQHLELTTLRLQGLPK 77 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~L~~L~L~~~~~ 77 (270)
++|++|+++++.+..+... .+..... .++ +|++|++++| .+....+. .++.+ ++|++| +++++.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~-~l~~~l~-~~~~~L~~L~Ls~N-~l~~~~~~-~l~~~l~~~~~~L~~L-----~Ls~n~- 91 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTV-ELIQAFA-NTPASVTSLNLSGN-SLGFKNSD-ELVQILAAIPANVTSL-----NLSGNF- 91 (362)
T ss_dssp TTCCEEECTTSCGGGSCHH-HHHHHHH-TCCTTCCEEECCSS-CGGGSCHH-HHHHHHHTSCTTCCEE-----ECCSSC-
T ss_pred CCceEEEccCCCCChHHHH-HHHHHHH-hCCCceeEEECcCC-CCCHHHHH-HHHHHHhccCCCccEE-----ECcCCc-
Confidence 4599999999877764210 0001122 577 8999999987 55554332 23333 666666 566653
Q ss_pred cceecCCc---cccCC-CcccEEEeccCCCceeecccc-c-------ccccCCCCCCCCCCCCCCCccccccccCcCCC-
Q 038160 78 LRCLYPGM---HTSEW-PALEILSVHRCDKLKIFTEDL-S-------QNNENDQLGIPAQQPPLPLEKEGCLEKHLGKL- 144 (270)
Q Consensus 78 L~~~~~~~---~~~~~-~~L~~L~i~~c~~l~~~~~~~-~-------~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~- 144 (270)
++...... ....+ ++|++|++++|. ++..+... . ..++.++..--.+ ... ....+.......
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l---~~~-~~~~l~~~l~~~~ 166 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDL---GIK-SSDELIQILAAIP 166 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCG---GGS-CHHHHHHHHHTSC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcC---CHH-HHHHHHHHHhcCC
Confidence 33221110 01123 678888888885 44322110 0 1222221100000 000 000000000113
Q ss_pred CCCCEEEecCcccccccccccc-cccccc-cccceEEEecCcchhh-----hcCCCccc-CcCCcEEEeeCCcCCcccCC
Q 038160 145 AMIKELKLYRPYHLKQLCKQDS-KLGPIF-QYLEILGVYHSQSLLI-----LLPSSSVS-FRNLAKLVAFGCKELIHLVT 216 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~-~~~~~l-~~L~~L~l~~c~~l~~-----~~~~~~~~-~~~L~~L~i~~c~~l~~l~~ 216 (270)
++|++|++++| ++.......- ...... ++|++|++++|. +.. +... ... .++|++|+++++ ++.+...
T Consensus 167 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~-l~~~~~~L~~L~Ls~N-~l~~~~~ 242 (362)
T 3goz_A 167 ANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYI-FSSIPNHVVSLNLCLN-CLHGPSL 242 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHHSCTTCCEEECCSS-CCCCCCH
T ss_pred ccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHH-HhcCCCCceEEECcCC-CCCcHHH
Confidence 38888888887 3433211000 011123 488889888875 333 2111 222 358899999876 4544322
Q ss_pred h---hHHhhccCCcEEEEecCC
Q 038160 217 S---STAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 217 ~---~~~~~l~~L~~L~i~~c~ 235 (270)
. .....+++|+.|++++|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhcCCCccEEEeccCC
Confidence 1 223556888899998884
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.42 E-value=1.8e-06 Score=70.12 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=90.3
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
.++|++|++++++++.+. |..+. .+++|++|+++++ .++.+ +...++.+++|++| ++++. +++.+.
T Consensus 39 ~~~L~~L~Ls~n~i~~~~-----~~~~~-~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L-----~Ls~N-~l~~l~ 104 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLE-----PGVFD-SLINLKELYLGSN-QLGAL-PVGVFDSLTQLTVL-----DLGTN-QLTVLP 104 (229)
T ss_dssp CTTCSEEECCSSCCCCCC-----TTTTT-TCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEE-----ECCSS-CCCCCC
T ss_pred CCCCCEEEcCCCccCccC-----HHHhh-CccCCcEEECCCC-CCCCc-ChhhcccCCCcCEE-----ECCCC-cCCccC
Confidence 478999999998888742 33333 7999999999997 46665 44446788888877 55554 455444
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLC 162 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~ 162 (270)
... ...+++|++|+++++ +++.+|.. ...+++|+.|++++. ++..+.
T Consensus 105 ~~~-~~~l~~L~~L~Ls~N-~l~~lp~~------------------------------~~~l~~L~~L~L~~N-~l~~~~ 151 (229)
T 3e6j_A 105 SAV-FDRLVHLKELFMCCN-KLTELPRG------------------------------IERLTHLTHLALDQN-QLKSIP 151 (229)
T ss_dssp TTT-TTTCTTCCEEECCSS-CCCSCCTT------------------------------GGGCTTCSEEECCSS-CCCCCC
T ss_pred hhH-hCcchhhCeEeccCC-cccccCcc------------------------------cccCCCCCEEECCCC-cCCccC
Confidence 322 246889999999988 45555421 112788999999887 555443
Q ss_pred cccccccccccccceEEEecCc
Q 038160 163 KQDSKLGPIFQYLEILGVYHSQ 184 (270)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~c~ 184 (270)
. .....+++|++|++.+.+
T Consensus 152 ~---~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 152 H---GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp T---TTTTTCTTCCEEECTTSC
T ss_pred H---HHHhCCCCCCEEEeeCCC
Confidence 2 223457899999988753
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.41 E-value=2.5e-07 Score=69.84 Aligned_cols=109 Identities=20% Similarity=0.185 Sum_probs=69.4
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|+++++ +++.+ .....+++|++|+++++. +....+.....+++|++|+++++. ++.+.....+..+
T Consensus 41 l~~L~~L~l~~n-~l~~~-----~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l 112 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI-----ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKL 112 (149)
T ss_dssp CTTCCEEECTTS-CCCCC-----TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGC
T ss_pred cCCCcEEECcCC-CCCCc-----hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhC
Confidence 778899999887 45543 123457889999998875 333223324458899999998874 5544322456788
Q ss_pred cCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCC
Q 038160 224 VRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFD 265 (270)
Q Consensus 224 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 265 (270)
++|+.|++++|+ +.++... .......+++|++|++.+
T Consensus 113 ~~L~~L~l~~N~-l~~~~~~----~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 113 ENLKSLDLFNCE-VTNLNDY----RENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTCG-GGGSTTH----HHHHHHHCTTCCEETTBC
T ss_pred CCCCEEeCcCCc-ccchHHH----HHHHHHHCCCcccccCCC
Confidence 899999999984 4433100 001122578888887753
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.29 E-value=4.7e-06 Score=67.21 Aligned_cols=132 Identities=15% Similarity=0.239 Sum_probs=87.7
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++|++|++++++++.+. ...+..+++|++|+++++ .+..+.+ ..++++++|++|+ +++. +++.+..
T Consensus 32 ~~l~~L~l~~n~i~~i~------~~~~~~l~~L~~L~Ls~N-~i~~~~~-~~~~~l~~L~~L~-----Ls~N-~l~~l~~ 97 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP------PGAFSPYKKLRRIDLSNN-QISELAP-DAFQGLRSLNSLV-----LYGN-KITELPK 97 (220)
T ss_dssp TTCCEEECCSSCCCEEC------TTSSTTCTTCCEEECCSS-CCCEECT-TTTTTCSSCCEEE-----CCSS-CCCCCCT
T ss_pred cCCCEEECCCCcCCCcC------HhHhhCCCCCCEEECCCC-cCCCcCH-HHhhCCcCCCEEE-----CCCC-cCCccCH
Confidence 57999999999888753 222237999999999987 4666533 3477888888874 5443 3444433
Q ss_pred CccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCccccccccc
Q 038160 84 GMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCK 163 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~ 163 (270)
.. ...+++|++|+++++. ++.++.. ....+++|+.|+++++ +++.+..
T Consensus 98 ~~-f~~l~~L~~L~L~~N~-l~~~~~~-----------------------------~~~~l~~L~~L~L~~N-~l~~~~~ 145 (220)
T 2v9t_B 98 SL-FEGLFSLQLLLLNANK-INCLRVD-----------------------------AFQDLHNLNLLSLYDN-KLQTIAK 145 (220)
T ss_dssp TT-TTTCTTCCEEECCSSC-CCCCCTT-----------------------------TTTTCTTCCEEECCSS-CCSCCCT
T ss_pred hH-ccCCCCCCEEECCCCC-CCEeCHH-----------------------------HcCCCCCCCEEECCCC-cCCEECH
Confidence 21 2458899999999984 4443310 0122788999999987 3444322
Q ss_pred ccccccccccccceEEEecCc
Q 038160 164 QDSKLGPIFQYLEILGVYHSQ 184 (270)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~c~ 184 (270)
.....+++|++|++++.+
T Consensus 146 ---~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 146 ---GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ---TTTTTCTTCCEEECCSSC
T ss_pred ---HHHhCCCCCCEEEeCCCC
Confidence 123457889999998753
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.28 E-value=6.3e-07 Score=67.54 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=28.9
Q ss_pred ccccceEEEecCcchhhhc-CCCcccCcCCcEEEeeCCcCCcccCC--hhHHhhccCCcEEEEe
Q 038160 172 FQYLEILGVYHSQSLLILL-PSSSVSFRNLAKLVAFGCKELIHLVT--SSTAKTLVRLVKVQVY 232 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~--~~~~~~l~~L~~L~i~ 232 (270)
+++|++|+++++. ++.+. +.....+++|++|+++++ .+..... ...+..+++|+.|+++
T Consensus 87 l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 4455555555443 22211 122445666677777665 3343322 1245566677766554
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.21 E-value=1.2e-05 Score=64.90 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=99.3
Q ss_pred cEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeeccccccccc
Q 038160 37 TRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNE 116 (270)
Q Consensus 37 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~ 116 (270)
+++++++. .++.++.. + ...+++| ++++. +++.+........+++|++|+++++. ++.++..
T Consensus 14 ~~l~~s~n-~l~~iP~~--~--~~~~~~L-----~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~------ 75 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEH--I--PQYTAEL-----RLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEG------ 75 (220)
T ss_dssp TEEECCSS-CCSSCCSC--C--CTTCSEE-----ECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTT------
T ss_pred CEeEeCCC-CcccCccC--C--CCCCCEE-----EcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHH------
Confidence 46666653 45555321 1 2334444 56664 45665443334578999999999884 6555411
Q ss_pred CCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCccc
Q 038160 117 NDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVS 196 (270)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 196 (270)
....+++|+.|+++++ +++.+.. .....+++|++|+++++. ++.+.+.....
T Consensus 76 -----------------------~~~~l~~L~~L~Ls~N-~l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 127 (220)
T 2v70_A 76 -----------------------AFEGASGVNEILLTSN-RLENVQH---KMFKGLESLKTLMLRSNR-ITCVGNDSFIG 127 (220)
T ss_dssp -----------------------TTTTCTTCCEEECCSS-CCCCCCG---GGGTTCSSCCEEECTTSC-CCCBCTTSSTT
T ss_pred -----------------------HhCCCCCCCEEECCCC-ccCccCH---hHhcCCcCCCEEECCCCc-CCeECHhHcCC
Confidence 1123889999999998 4444322 123458999999999864 55665555678
Q ss_pred CcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 197 FRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 197 ~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
+++|++|+++++ +++.+. +..+..+++|+.|++++.+
T Consensus 128 l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 128 LSSVRLLSLYDN-QITTVA-PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTCSEEECTTS-CCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred CccCCEEECCCC-cCCEEC-HHHhcCCCCCCEEEecCcC
Confidence 899999999985 555543 3456788999999999864
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.19 E-value=2.4e-06 Score=66.37 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=42.1
Q ss_pred CCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhcc
Q 038160 145 AMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLV 224 (270)
Q Consensus 145 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~ 224 (270)
++|+.|+++++ +++.+ .....+++|++|+++++. ++.+++.....+++|++|+++++ ++..+........++
T Consensus 42 ~~L~~L~Ls~N-~l~~~-----~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKL-----DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLK 113 (176)
T ss_dssp TCCSEEECCSS-CCCEE-----CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT
T ss_pred CCCCEEECCCC-CCCcc-----cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCC
Confidence 36666666665 33332 112345666666666643 34443332245666666666654 233332212344566
Q ss_pred CCcEEEEecCC
Q 038160 225 RLVKVQVYGCR 235 (270)
Q Consensus 225 ~L~~L~i~~c~ 235 (270)
+|+.|++++++
T Consensus 114 ~L~~L~l~~N~ 124 (176)
T 1a9n_A 114 SLTYLCILRNP 124 (176)
T ss_dssp TCCEEECCSSG
T ss_pred CCCEEEecCCC
Confidence 66666666663
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.10 E-value=5.2e-06 Score=64.37 Aligned_cols=131 Identities=16% Similarity=0.036 Sum_probs=69.2
Q ss_pred cCCCccEEEEecCcCccccCCchhhcccc-ccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeeccc
Q 038160 32 HFQSLTRLVVWYCDKLKYIFSASMIGNLK-QLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTED 110 (270)
Q Consensus 32 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~ 110 (270)
..++|++|+++++ .++.+ +. +..+. +|++| ++++. .++.+ .....+++|++|+++++. ++.++..
T Consensus 17 ~~~~L~~L~l~~n-~l~~i-~~--~~~~~~~L~~L-----~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~ 82 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVI-EN--LGATLDQFDAI-----DFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEG 82 (176)
T ss_dssp CTTSCEEEECTTS-CCCSC-CC--GGGGTTCCSEE-----ECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEECSC
T ss_pred CcCCceEEEeeCC-CCchh-HH--hhhcCCCCCEE-----ECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccCcc
Confidence 5666777777765 44444 21 23333 55555 44443 33433 122456777777777763 4444410
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhc
Q 038160 111 LSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILL 190 (270)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 190 (270)
....+++|+.|+++++ ++..+.. -.....+++|++|++++++- ..++
T Consensus 83 -----------------------------~~~~l~~L~~L~L~~N-~i~~~~~--~~~l~~l~~L~~L~l~~N~i-~~~~ 129 (176)
T 1a9n_A 83 -----------------------------LDQALPDLTELILTNN-SLVELGD--LDPLASLKSLTYLCILRNPV-TNKK 129 (176)
T ss_dssp -----------------------------HHHHCTTCCEEECCSC-CCCCGGG--GGGGGGCTTCCEEECCSSGG-GGST
T ss_pred -----------------------------hhhcCCCCCEEECCCC-cCCcchh--hHhhhcCCCCCEEEecCCCC-CCcH
Confidence 0012667777777776 3333211 01123467788888877653 2322
Q ss_pred CC---CcccCcCCcEEEeeCCc
Q 038160 191 PS---SSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 191 ~~---~~~~~~~L~~L~i~~c~ 209 (270)
.. ....+++|+.|++.++.
T Consensus 130 ~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 130 HYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp THHHHHHHHCTTCSEETTEECC
T ss_pred hHHHHHHHHCCccceeCCCcCC
Confidence 11 24567888888887664
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=2.8e-05 Score=66.41 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=48.7
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCc-EEEEecCCCcceE
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLV-KVQVYGCRAMTEV 240 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~-~L~i~~c~~l~~~ 240 (270)
+++|+++++.++. ++.++...+..+++|++|++.+ +++.+ ....+..+++|+ .+.+.+ +++.+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~--ni~~I-~~~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPH--NLKTI-GQRVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEEEECT--TCCEE
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCc--cccee-hHHHhhCChhccEEEEEcc--cceEE
Confidence 6889999998743 6666655567889999999986 47665 445678899999 999988 56666
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.05 E-value=3.4e-05 Score=60.67 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=43.0
Q ss_pred cEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCcc
Q 038160 7 EALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMH 86 (270)
Q Consensus 7 ~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~ 86 (270)
+++++++++++. +|.. ..++|++|+++++ .++.+.+...++.+++|++| ++++. +++.+.+..
T Consensus 11 ~~l~~s~~~l~~------ip~~---~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L-----~Ls~N-~l~~~~~~~- 73 (192)
T 1w8a_A 11 TTVDCTGRGLKE------IPRD---IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKL-----ELKRN-QLTGIEPNA- 73 (192)
T ss_dssp TEEECTTSCCSS------CCSC---CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEE-----ECCSS-CCCCBCTTT-
T ss_pred CEEEcCCCCcCc------CccC---CCCCCCEEECCCC-cCCccCCccccccCCCCCEE-----ECCCC-CCCCcCHhH-
Confidence 566777766655 4554 3347888888876 56665444345666666666 33332 233332211
Q ss_pred ccCCCcccEEEeccC
Q 038160 87 TSEWPALEILSVHRC 101 (270)
Q Consensus 87 ~~~~~~L~~L~i~~c 101 (270)
...+++|++|+++++
T Consensus 74 ~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 74 FEGASHIQELQLGEN 88 (192)
T ss_dssp TTTCTTCCEEECCSC
T ss_pred cCCcccCCEEECCCC
Confidence 124556666666665
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=2.1e-05 Score=72.57 Aligned_cols=122 Identities=19% Similarity=0.180 Sum_probs=61.8
Q ss_pred CccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCccccCCCcccEEEeccCCCceeeccccccc
Q 038160 35 SLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMHTSEWPALEILSVHRCDKLKIFTEDLSQN 114 (270)
Q Consensus 35 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~ 114 (270)
.|++|+++++ .++.+ |. ++.+++|+.| ++++. +++.++. ....+++|+.|+++++ .++.+|.
T Consensus 442 ~L~~L~Ls~n-~l~~l-p~--~~~l~~L~~L-----~Ls~N-~l~~lp~--~~~~l~~L~~L~Ls~N-~l~~lp~----- 503 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVL-CH--LEQLLLVTHL-----DLSHN-RLRALPP--ALAALRCLEVLQASDN-ALENVDG----- 503 (567)
T ss_dssp TCSEEECTTS-CCSSC-CC--GGGGTTCCEE-----ECCSS-CCCCCCG--GGGGCTTCCEEECCSS-CCCCCGG-----
T ss_pred CceEEEecCC-CCCCC-cC--ccccccCcEe-----ecCcc-cccccch--hhhcCCCCCEEECCCC-CCCCCcc-----
Confidence 4666666665 45554 22 5666666655 33332 2332221 1235666777777666 2433330
Q ss_pred ccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCC--
Q 038160 115 NENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPS-- 192 (270)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-- 192 (270)
...+++|+.|+++++ ++..+.. +.....+++|+.|++++++ ++..++.
T Consensus 504 --------------------------l~~l~~L~~L~Ls~N-~l~~~~~--p~~l~~l~~L~~L~L~~N~-l~~~~~~~~ 553 (567)
T 1dce_A 504 --------------------------VANLPRLQELLLCNN-RLQQSAA--IQPLVSCPRLVLLNLQGNS-LCQEEGIQE 553 (567)
T ss_dssp --------------------------GTTCSSCCEEECCSS-CCCSSST--TGGGGGCTTCCEEECTTSG-GGGSSSCTT
T ss_pred --------------------------cCCCCCCcEEECCCC-CCCCCCC--cHHHhcCCCCCEEEecCCc-CCCCccHHH
Confidence 112667777777766 3433310 1123446777777777754 4443332
Q ss_pred -CcccCcCCcEEE
Q 038160 193 -SSVSFRNLAKLV 204 (270)
Q Consensus 193 -~~~~~~~L~~L~ 204 (270)
....+|+|+.|+
T Consensus 554 ~l~~~lp~L~~L~ 566 (567)
T 1dce_A 554 RLAEMLPSVSSIL 566 (567)
T ss_dssp HHHHHCTTCSEEE
T ss_pred HHHHHCcccCccC
Confidence 122367777764
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.97 E-value=6e-05 Score=58.23 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=19.5
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
+++|++|+++++ .++.+++.....+++|++|++.+++
T Consensus 99 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 99 LTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 455555555554 2333333323456677777776654
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.94 E-value=6.4e-05 Score=58.07 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=37.9
Q ss_pred CCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecC
Q 038160 4 PNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYP 83 (270)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~ 83 (270)
++|++|++++++++.+ |...+..+++|++|+++++ .++.+ +...++.+++|++| ++++. +++.+..
T Consensus 28 ~~l~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L-----~l~~N-~l~~~~~ 93 (177)
T 2o6r_A 28 SSATRLELESNKLQSL------PHGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTIL-----YLHEN-KLQSLPN 93 (177)
T ss_dssp TTCSEEECCSSCCCCC------CTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEE-----ECCSS-CCCCCCT
T ss_pred CCCcEEEeCCCcccEe------CHHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEE-----ECCCC-CccccCH
Confidence 4566666666555432 2222124566666666554 34443 22223455555555 33332 2332222
Q ss_pred CccccCCCcccEEEeccC
Q 038160 84 GMHTSEWPALEILSVHRC 101 (270)
Q Consensus 84 ~~~~~~~~~L~~L~i~~c 101 (270)
.. ...+++|++|+++++
T Consensus 94 ~~-~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 94 GV-FDKLTQLKELALDTN 110 (177)
T ss_dssp TT-TTTCTTCCEEECCSS
T ss_pred HH-hhCCcccCEEECcCC
Confidence 11 123556666666655
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.85 E-value=0.0001 Score=58.05 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=9.1
Q ss_pred CCCCCEEEecCc
Q 038160 144 LAMIKELKLYRP 155 (270)
Q Consensus 144 ~~~L~~L~i~~c 155 (270)
+++|+.|++.+.
T Consensus 125 l~~L~~L~L~~N 136 (193)
T 2wfh_A 125 LSALSHLAIGAN 136 (193)
T ss_dssp CTTCCEEECCSS
T ss_pred CccccEEEeCCC
Confidence 778888887764
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.84 E-value=0.00012 Score=57.58 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=24.4
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
+++|++|+++++. ++.+.+.....+++|++|+++++ +++.+.. ..+..+++|+.|+++++
T Consensus 53 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 53 LPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN-KIKEISN-KMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC-CCCEECS-SSSTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCC
Confidence 4445555554432 33332332334444555555443 2333221 12233444555555444
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.81 E-value=1.4e-05 Score=69.23 Aligned_cols=216 Identities=15% Similarity=0.063 Sum_probs=102.0
Q ss_pred CC-CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchh---hccc-cccceeEeeeEEeccCCC
Q 038160 3 LP-NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASM---IGNL-KQLQHLELTTLRLQGLPK 77 (270)
Q Consensus 3 ~~-~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~---~~~l-~~L~~L~L~~L~L~~~~~ 77 (270)
++ +|++|+++++++...... .+.......+++|++|++++|. +....+... +..+ ++|++| +++++.
T Consensus 49 ~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L-----~Ls~N~- 120 (362)
T 3goz_A 49 TPASVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVL-----DLGWND- 120 (362)
T ss_dssp CCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEE-----ECCSSC-
T ss_pred CCCceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEE-----ECcCCc-
Confidence 56 899999999888763110 0111001013899999999984 554433222 2233 566666 555553
Q ss_pred cceecCCcc---ccC-CCcccEEEeccCCCcee-----ecccc--c-ccccCCCCCCCCCCCCCCCccccc--cccCcCC
Q 038160 78 LRCLYPGMH---TSE-WPALEILSVHRCDKLKI-----FTEDL--S-QNNENDQLGIPAQQPPLPLEKEGC--LEKHLGK 143 (270)
Q Consensus 78 L~~~~~~~~---~~~-~~~L~~L~i~~c~~l~~-----~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~c--~e~~~~~ 143 (270)
++....... ... .++|++|++++|. ++. ++... . ..++.++..--.+ .. ..+ +......
T Consensus 121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l---~~---~~~~~l~~~l~~ 193 (362)
T 3goz_A 121 FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNL---AS---KNCAELAKFLAS 193 (362)
T ss_dssp GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCG---GG---SCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCC---ch---hhHHHHHHHHHh
Confidence 332221110 011 2478888887773 331 11100 0 1222222100000 00 000 0000111
Q ss_pred C-CCCCEEEecCccccccccccc-cccccc-ccccceEEEecCcchhhhcC----CCcccCcCCcEEEeeCCc--CCccc
Q 038160 144 L-AMIKELKLYRPYHLKQLCKQD-SKLGPI-FQYLEILGVYHSQSLLILLP----SSSVSFRNLAKLVAFGCK--ELIHL 214 (270)
Q Consensus 144 ~-~~L~~L~i~~c~~l~~~~~~~-~~~~~~-l~~L~~L~l~~c~~l~~~~~----~~~~~~~~L~~L~i~~c~--~l~~l 214 (270)
. ++|+.|+++++. +....... ...... .++|++|+++++. +.+... .....+++|++|++++|. .+..-
T Consensus 194 ~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~ 271 (362)
T 3goz_A 194 IPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred CCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence 3 589999999884 43311100 000111 3589999999874 332211 123457889999999875 12111
Q ss_pred CChh---HHhhccCCcEEEEecCC
Q 038160 215 VTSS---TAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 215 ~~~~---~~~~l~~L~~L~i~~c~ 235 (270)
.... ....+++|+.|++++.+
T Consensus 272 ~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 272 QCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHhccCCceEEEecCCCc
Confidence 1111 12345567777777664
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.72 E-value=0.00025 Score=55.80 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=38.7
Q ss_pred cEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCCcc
Q 038160 7 EALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPGMH 86 (270)
Q Consensus 7 ~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~~~ 86 (270)
+++++++++++. +|.+ -.++|++|++.++ .++.++ ..++++++|++|+ +++. +++.+....
T Consensus 13 ~~l~~~~~~l~~------ip~~---~~~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~-----Ls~N-~i~~i~~~~- 73 (193)
T 2wfh_A 13 TVVRCSNKGLKV------LPKG---IPRDVTELYLDGN-QFTLVP--KELSNYKHLTLID-----LSNN-RISTLSNQS- 73 (193)
T ss_dssp TEEECTTSCCSS------CCSC---CCTTCCEEECCSS-CCCSCC--GGGGGCTTCCEEE-----CCSS-CCCCCCTTT-
T ss_pred CEEEcCCCCCCc------CCCC---CCCCCCEEECCCC-cCchhH--HHhhcccCCCEEE-----CCCC-cCCEeCHhH-
Confidence 355565666654 4443 3467888888775 455443 2356666666553 3332 222222211
Q ss_pred ccCCCcccEEEeccC
Q 038160 87 TSEWPALEILSVHRC 101 (270)
Q Consensus 87 ~~~~~~L~~L~i~~c 101 (270)
...+++|++|+++++
T Consensus 74 f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 74 FSNMTQLLTLILSYN 88 (193)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred ccCCCCCCEEECCCC
Confidence 123555666665555
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.67 E-value=3.9e-06 Score=66.39 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=43.0
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcC-CCcccCcCCcEEEeeCCcCCcccCC------
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLP-SSSVSFRNLAKLVAFGCKELIHLVT------ 216 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~------ 216 (270)
+++|+.|+++++ ++..+. ....+++|++|+++++. ++.+.. .....+++|++|++.+++- .....
T Consensus 92 ~~~L~~L~L~~N-~l~~l~-----~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~ 163 (198)
T 1ds9_A 92 ADTLEELWISYN-QIASLS-----GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL-YNDYKENNATS 163 (198)
T ss_dssp HHHCSEEEEEEE-ECCCHH-----HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH-HHHHHTTTTHH
T ss_pred CCcCCEEECcCC-cCCcCC-----ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc-ccccccccchH
Confidence 456666766665 333321 12346777777777653 332211 1234577888888887642 22111
Q ss_pred ---hhHHhhccCCcEEE
Q 038160 217 ---SSTAKTLVRLVKVQ 230 (270)
Q Consensus 217 ---~~~~~~l~~L~~L~ 230 (270)
......+++|+.|+
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 12356778888876
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.66 E-value=6.6e-05 Score=71.25 Aligned_cols=105 Identities=22% Similarity=0.205 Sum_probs=54.5
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+++|++|+|+++.+.. +|..++ .+++|++|+++++ .++.++. .++++++|++| +|++.. ++.++
T Consensus 223 l~~L~~L~Ls~n~l~~------l~~~~~-~l~~L~~L~Ls~N-~l~~lp~--~~~~l~~L~~L-----~Ls~N~-l~~lp 286 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN------ISANIF-KYDFLTRLYLNGN-SLTELPA--EIKNLSNLRVL-----DLSHNR-LTSLP 286 (727)
T ss_dssp CCCCCEEECTTSCCSC------CCGGGG-GCCSCSCCBCTTS-CCSCCCG--GGGGGTTCCEE-----ECTTSC-CSSCC
T ss_pred CCCCcEEECCCCCCCC------CChhhc-CCCCCCEEEeeCC-cCcccCh--hhhCCCCCCEE-----eCcCCc-CCccC
Confidence 4556666666655543 333344 5666666666655 3443321 24556665555 333332 33222
Q ss_pred CCccccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcc
Q 038160 83 PGMHTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPY 156 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~ 156 (270)
.. ...+++|++|+++++ .++.+|.. ...+++|+.|+++++.
T Consensus 287 ~~--~~~l~~L~~L~L~~N-~l~~lp~~------------------------------~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 287 AE--LGSCFQLKYFYFFDN-MVTTLPWE------------------------------FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SS--GGGGTTCSEEECCSS-CCCCCCSS------------------------------TTSCTTCCCEECTTSC
T ss_pred hh--hcCCCCCCEEECCCC-CCCccChh------------------------------hhcCCCccEEeCCCCc
Confidence 11 234566666666665 34444310 2237889999998874
No 137
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.63 E-value=0.00021 Score=62.04 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=30.5
Q ss_pred ccccceEEEecCcchhhhcCC--CcccCcCCcEEEeeCCcCCcccCChhH---HhhccCCcEEEEecC
Q 038160 172 FQYLEILGVYHSQSLLILLPS--SSVSFRNLAKLVAFGCKELIHLVTSST---AKTLVRLVKVQVYGC 234 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~--~~~~~~~L~~L~i~~c~~l~~l~~~~~---~~~l~~L~~L~i~~c 234 (270)
+|+|++|.+++|......... ....+|+|++|+++. +++.+.....+ ...+++|+.|++++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 566777777665432211000 012356677777753 34554211111 134566777777666
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.62 E-value=6.5e-05 Score=71.29 Aligned_cols=59 Identities=19% Similarity=0.028 Sum_probs=39.5
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
+++|+.|+++++. +..+. .....+++|++|+++++ .++.++.. +..+++|+.|+++++.
T Consensus 269 l~~L~~L~Ls~N~-l~~lp----~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 269 LSNLRVLDLSHNR-LTSLP----AELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GTTCCEEECTTSC-CSSCC----SSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CCCCCEEeCcCCc-CCccC----hhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCc
Confidence 7788888888873 54432 12345778888888876 35555333 6677888888888764
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.47 E-value=0.0004 Score=53.35 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=27.5
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
+++|++|+++++ .++.+++..+..+++|++|++++. +++.+. ...+..+++|+.|++++
T Consensus 53 l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 53 LTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIP-RGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS
T ss_pred cccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeC-HHHhcCCCCCCEEEeCC
Confidence 455555555553 244443332344555555555543 333321 22334455555555555
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.43 E-value=0.0036 Score=55.00 Aligned_cols=191 Identities=11% Similarity=0.095 Sum_probs=91.1
Q ss_pred CccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceecCC
Q 038160 5 NLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLYPG 84 (270)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~~~ 84 (270)
+|+++.+.+ +++.| +.+.|..+++|+.+++.+. +++.+.. ..+. ..+|+.+ .+. .+++.+...
T Consensus 158 ~L~~i~lp~-~l~~I------~~~aF~~c~~L~~l~l~~n-~l~~I~~-~aF~-~~~L~~l-----~lp--~~l~~I~~~ 220 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQL------KEDIFYYCYNLKKADLSKT-KITKLPA-STFV-YAGIEEV-----LLP--VTLKEIGSQ 220 (401)
T ss_dssp CCCEEECCT-TCCEE------CSSTTTTCTTCCEEECTTS-CCSEECT-TTTT-TCCCSEE-----ECC--TTCCEECTT
T ss_pred CceEEEeCC-CccEe------hHHHhhCcccCCeeecCCC-cceEech-hhEe-ecccCEE-----EeC--Cchheehhh
Confidence 466666654 44443 2233336788888888653 4555533 2233 3555555 332 234433332
Q ss_pred ccccCCCcccEEEeccCCCceeecccc--cccccCCCCCCCCCCCCCCCcccccc-ccCcCCCCCCCEEEecCccc----
Q 038160 85 MHTSEWPALEILSVHRCDKLKIFTEDL--SQNNENDQLGIPAQQPPLPLEKEGCL-EKHLGKLAMIKELKLYRPYH---- 157 (270)
Q Consensus 85 ~~~~~~~~L~~L~i~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~c~-e~~~~~~~~L~~L~i~~c~~---- 157 (270)
. ...+++|+.+.+.+ +++.++... ...++.+.. +. .+.. + .+.+..+++|+++.+.+..-
T Consensus 221 a-F~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~l--p~--~i~~------I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 221 A-FLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKL--PN--GVTN------IASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp T-TTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEE--ET--TCCE------ECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred H-hhCCCCCCEEecCC--CccCccccccccCCccEEEe--CC--CccE------EChhHhhCCCCCCEEEeCCccccCCc
Confidence 2 22455666666654 244333211 000000000 00 0000 0 01122266777777655311
Q ss_pred ccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecC
Q 038160 158 LKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGC 234 (270)
Q Consensus 158 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 234 (270)
...+. ..+...+++|+.+.+.+ .++.+....+..+.+|+++.+.. +++.+. ...+..+ +|+.+.+.+.
T Consensus 288 ~~~I~---~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~-~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 288 EAMIH---PYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQIN-FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCEEC---TTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEEC-TTSSSSS-CCCEEEECCS
T ss_pred ccEEC---HHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEc-HHhCCCC-CCCEEEEcCC
Confidence 11111 12233467777777763 35555544455677888888853 355543 2344566 7888888775
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.43 E-value=0.00053 Score=52.94 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=43.4
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
.++|+.|++++. +++.+.. .....+++|++|+++++ .++.+++..+..+++|++|+++++ +++.+ ....+..+
T Consensus 32 ~~~L~~L~Ls~N-~l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l 104 (174)
T 2r9u_A 32 PTDKQRLWLNNN-QITKLEP---GVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSI-PRGAFDNL 104 (174)
T ss_dssp CTTCSEEECCSS-CCCCCCT---TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTC
T ss_pred CCCCcEEEeCCC-CccccCH---HHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-cccee-CHHHhccc
Confidence 345666666665 2333221 11234566666666664 355444433345666666666653 34433 22334556
Q ss_pred cCCcEEEEecC
Q 038160 224 VRLVKVQVYGC 234 (270)
Q Consensus 224 ~~L~~L~i~~c 234 (270)
++|+.|++++.
T Consensus 105 ~~L~~L~L~~N 115 (174)
T 2r9u_A 105 KSLTHIYLYNN 115 (174)
T ss_dssp TTCSEEECCSS
T ss_pred cCCCEEEeCCC
Confidence 66666666664
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.42 E-value=0.00042 Score=53.22 Aligned_cols=13 Identities=31% Similarity=0.220 Sum_probs=6.2
Q ss_pred cCCCccEEEEecC
Q 038160 32 HFQSLTRLVVWYC 44 (270)
Q Consensus 32 ~l~~L~~L~l~~c 44 (270)
.+++|++|+++++
T Consensus 52 ~l~~L~~L~Ls~N 64 (170)
T 3g39_A 52 RLTQLTRLDLDNN 64 (170)
T ss_dssp TCTTCSEEECCSS
T ss_pred CcccCCEEECCCC
Confidence 4445555555443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.39 E-value=0.00029 Score=54.42 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=6.1
Q ss_pred cCCCccEEEEecC
Q 038160 32 HFQSLTRLVVWYC 44 (270)
Q Consensus 32 ~l~~L~~L~l~~c 44 (270)
.+++|++|+++++
T Consensus 55 ~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 55 HLVNLQQLYFNSN 67 (174)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCcCCCEEECCCC
Confidence 4444555554443
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.28 E-value=0.00048 Score=59.76 Aligned_cols=173 Identities=14% Similarity=0.028 Sum_probs=92.0
Q ss_pred CCCCccEEEEeccccc---eeccc-ccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCC
Q 038160 2 ALPNLEALEISAINVD---KIWHY-NQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPK 77 (270)
Q Consensus 2 ~~~~L~~L~l~~~~l~---~~~~~-~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~ 77 (270)
.|++|++|.|.+...+ ..|.. ..++. +.+.+|+|+.|.++++..++ + +. + .+++|++| +|..+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l~-l-~~--~-~~~~L~~L-----~L~~~~- 204 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLS-I-GK--K-PRPNLKSL-----EIISGG- 204 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTCB-C-CS--C-BCTTCSEE-----EEECSB-
T ss_pred hcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCce-e-cc--c-cCCCCcEE-----EEecCC-
Confidence 3789999998663221 11221 00111 11278999999999984442 2 22 2 36777766 454432
Q ss_pred cceecCCc-cccCCCcccEEEeccCCCceeecccccccccCCCCCCCCCCCCCCCccccccccCcCCCCCCCEEEecCcc
Q 038160 78 LRCLYPGM-HTSEWPALEILSVHRCDKLKIFTEDLSQNNENDQLGIPAQQPPLPLEKEGCLEKHLGKLAMIKELKLYRPY 156 (270)
Q Consensus 78 L~~~~~~~-~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~e~~~~~~~~L~~L~i~~c~ 156 (270)
+..-.... ....+|+|+.|++..+.+... .. .....+.. ... ...+|+|+.|++.+|.
T Consensus 205 l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~-~~---~~~~~l~~-------~l~----------~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYG-FD---GDMNVFRP-------LFS----------KDRFPNLKWLGIVDAE 263 (362)
T ss_dssp CCHHHHHHHHHSBCTTCCEEEEECBCGGGT-CC---SCGGGTGG-------GSC----------TTTCTTCCEEEEESCT
T ss_pred CChHHHHHHHHccCCCCcEEEEeccccccc-cc---hhHHHHHH-------HHh----------cCCCCCcCEEeCCCCC
Confidence 22111111 113689999999864432110 00 00111000 000 0128899999999885
Q ss_pred cccccccccccccccccccceEEEecCcchhhhc----CCCcccCcCCcEEEeeCCc
Q 038160 157 HLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILL----PSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 157 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~~~~~~~L~~L~i~~c~ 209 (270)
--..... .-.....+++|++|+++.+ .+.+.. ......+++|++|++++|.
T Consensus 264 i~~~~~~-~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 264 EQNVVVE-MFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp THHHHHH-HHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CchHHHH-HHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 3221100 0001135899999999865 354421 2223568999999999773
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.17 E-value=7.5e-05 Score=58.88 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=35.8
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEE
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLR 71 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~ 71 (270)
+++|++|++++++++. +| .+. .+++|++|++++| .++.++. .++.+++|++|++..-.
T Consensus 47 l~~L~~L~ls~n~l~~------l~-~~~-~l~~L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK------IS-SLS-GMENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYNQ 104 (198)
T ss_dssp TTTCSEEECSEEEESC------CC-CHH-HHTTCCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEEE
T ss_pred CCCCCEEECCCCCCcc------cc-ccc-cCCCCCEEECCCC-Ccccccc--hhhcCCcCCEEECcCCc
Confidence 5677888887776665 33 232 6777888888776 3554432 25566777777644433
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.11 E-value=0.014 Score=51.23 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=32.4
Q ss_pred cccccceEEEecCcc----hhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCCCcceE
Q 038160 171 IFQYLEILGVYHSQS----LLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCRAMTEV 240 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~----l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 240 (270)
.+++|+.+.+.+... ...+....+..+++|+++.+. ++++.+. ...+..|.+|+.+.+... +..+
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~-~~aF~~c~~L~~l~lp~~--l~~I 337 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP--ESIRILG-QGLLGGNRKVTQLTIPAN--VTQI 337 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC--TTCCEEC-TTTTTTCCSCCEEEECTT--CCEE
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC--CceEEEh-hhhhcCCCCccEEEECcc--ccEE
Confidence 355666666654211 112323334456666666665 2344442 234456677777777432 4444
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.10 E-value=2.9e-05 Score=67.82 Aligned_cols=12 Identities=17% Similarity=0.049 Sum_probs=6.8
Q ss_pred ccCCcEEEEecC
Q 038160 223 LVRLVKVQVYGC 234 (270)
Q Consensus 223 l~~L~~L~i~~c 234 (270)
.++|++|+++++
T Consensus 238 ~~~L~~L~Ls~N 249 (372)
T 3un9_A 238 HPSLELLHLYFN 249 (372)
T ss_dssp CSSCCEEECTTS
T ss_pred CCCCCEEeccCC
Confidence 355566665555
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.80 E-value=0.0032 Score=53.76 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=51.6
Q ss_pred CCCccEEEEec-cccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCccee
Q 038160 3 LPNLEALEISA-INVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCL 81 (270)
Q Consensus 3 ~~~L~~L~l~~-~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~ 81 (270)
+++|++|+|++ +.++.+.. +.+..+++|++|+++++ .++.+++ ..++++++|++|+ |++. +|+.+
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~------~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~-----l~~N-~l~~~ 95 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLEL------RDLRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLN-----LSFN-ALESL 95 (347)
T ss_dssp CSCCSEEECCSCSSCCEECG------GGSCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEE-----CCSS-CCSCC
T ss_pred CCCeeEEEccCCCCCCCcCh------hHhccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEe-----CCCC-cccee
Confidence 46788888886 88876422 22227888888888876 5777644 3367788877774 4332 34443
Q ss_pred cCCccccCCCcccEEEeccCC
Q 038160 82 YPGMHTSEWPALEILSVHRCD 102 (270)
Q Consensus 82 ~~~~~~~~~~~L~~L~i~~c~ 102 (270)
+... .....|+.|++.+.+
T Consensus 96 ~~~~--~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 96 SWKT--VQGLSLQELVLSGNP 114 (347)
T ss_dssp CSTT--TCSCCCCEEECCSSC
T ss_pred CHHH--cccCCceEEEeeCCC
Confidence 3322 122238888887764
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.44 E-value=0.0045 Score=52.81 Aligned_cols=85 Identities=21% Similarity=0.105 Sum_probs=57.2
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+++|+.|++++..+++.+... ....+++|++|+|+++ .++.+.+..+..+++|++|++++. +|+.+. ...+..+
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~---~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~~ 103 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLS-WKTVQGL 103 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGG---GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCC-STTTCSC
T ss_pred CCCeeEEEccCCCCCCCcChh---HhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeC-HHHcccC
Confidence 667888888875566665432 2345788888888886 477766665677888888888864 565543 2233334
Q ss_pred cCCcEEEEecCC
Q 038160 224 VRLVKVQVYGCR 235 (270)
Q Consensus 224 ~~L~~L~i~~c~ 235 (270)
+ |+.|++.+.+
T Consensus 104 ~-L~~l~l~~N~ 114 (347)
T 2ifg_A 104 S-LQELVLSGNP 114 (347)
T ss_dssp C-CCEEECCSSC
T ss_pred C-ceEEEeeCCC
Confidence 3 8888887753
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.06 E-value=0.57 Score=40.44 Aligned_cols=80 Identities=14% Similarity=0.024 Sum_probs=41.2
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhc
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTL 223 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 223 (270)
+.+|+++.+.+ +++.+.. .+.....+|+.+.+.+ .++.+....+..+.+|+++.+.. +++.+. ...+..|
T Consensus 296 ~~~L~~i~l~~--~i~~I~~---~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~-~~aF~~C 365 (394)
T 4fs7_A 296 CSSLTEVKLLD--SVKFIGE---EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIG-ANAFQGC 365 (394)
T ss_dssp CTTCCEEEECT--TCCEECT---TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC-TTTBTTC
T ss_pred ccccccccccc--ccceech---hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEeh-HHHhhCC
Confidence 55566555532 2333221 1223356677666642 24444444345567777777653 344442 2345666
Q ss_pred cCCcEEEEec
Q 038160 224 VRLVKVQVYG 233 (270)
Q Consensus 224 ~~L~~L~i~~ 233 (270)
++|+.+++..
T Consensus 366 ~~L~~i~lp~ 375 (394)
T 4fs7_A 366 INLKKVELPK 375 (394)
T ss_dssp TTCCEEEEEG
T ss_pred CCCCEEEECC
Confidence 7777776654
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.11 E-value=0.89 Score=39.21 Aligned_cols=58 Identities=9% Similarity=-0.071 Sum_probs=37.3
Q ss_pred cccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 171 IFQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
...+|+.+.+.+ .++.+....+..+.+|+++.+.+ +++.+. ...+..|.+|+.+.+..
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~-~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIG-KRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC-TTTTTTCTTCCEECCCT
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEh-HHhccCCCCCCEEEECc
Confidence 466777777753 35555444455678888888863 455543 34556788888887754
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=92.94 E-value=0.0073 Score=52.47 Aligned_cols=115 Identities=11% Similarity=-0.027 Sum_probs=65.9
Q ss_pred CCCCCEEEecCcccccccccccccccccccccceEEEecCcchhhhcCC-----CcccCcCCcEEEeeCCcCCcccCChh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQDSKLGPIFQYLEILGVYHSQSLLILLPS-----SSVSFRNLAKLVAFGCKELIHLVTSS 218 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-----~~~~~~~L~~L~i~~c~~l~~l~~~~ 218 (270)
.++|++|++++|. +..... ......+++|++|++++|. +.+.... .....++|++|++++|. +.+.....
T Consensus 100 ~~~L~~L~Ls~n~-l~~~~~--~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~ 174 (372)
T 3un9_A 100 RHALDEVNLASCQ-LDPAGL--RTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAV 174 (372)
T ss_dssp SSCEEEEECTTCC-CCHHHH--HHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHH
T ss_pred CCCceEEEecCCC-CCHHHH--HHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHH
Confidence 3678888888883 322111 1122346789999999874 3221111 00235789999999884 54432111
Q ss_pred ---HHhhccCCcEEEEecCCCcceEeeccCCCCccceeecCccCeeecCCCC
Q 038160 219 ---TAKTLVRLVKVQVYGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDLD 267 (270)
Q Consensus 219 ---~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 267 (270)
.....++|++|++++|. +.+.... .........++|++|++.++.
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~-l~~~g~~---~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTG-LGDEGLE---LLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSS-CHHHHHH---HHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHhcCCCcCEEeCCCCC-CCcHHHH---HHHHHHhcCCCcCeEECCCCC
Confidence 23567889999999985 4432110 001111135689999998873
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.92 E-value=0.079 Score=43.68 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=8.1
Q ss_pred CCCccEEEEeccccce
Q 038160 3 LPNLEALEISAINVDK 18 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~ 18 (270)
+|+|++|+|+++++..
T Consensus 169 l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYR 184 (267)
T ss_dssp CTTCCEEECTTSCCCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 4455555555554444
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=90.32 E-value=0.12 Score=39.89 Aligned_cols=90 Identities=12% Similarity=-0.036 Sum_probs=47.8
Q ss_pred CCCCCEEEecCccccccccccc-ccccccccccceEEEecCcchhhhc----CCCcccCcCCcEEEee-CCcCCcccCCh
Q 038160 144 LAMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLLILL----PSSSVSFRNLAKLVAF-GCKELIHLVTS 217 (270)
Q Consensus 144 ~~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~----~~~~~~~~~L~~L~i~-~c~~l~~l~~~ 217 (270)
.++|++|+++++. +..-.... .......++|++|++++|. +.+.. .......++|++|+++ ....+.+-...
T Consensus 64 ~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 64 NTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp CCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred CCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 5678888888873 32210000 0011124678888888764 22210 1123345678888884 23445443211
Q ss_pred ---hHHhhccCCcEEEEecCC
Q 038160 218 ---STAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 218 ---~~~~~l~~L~~L~i~~c~ 235 (270)
......++|++|++++|.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCcCEEeccCCC
Confidence 223445778888888773
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=83.70 E-value=0.72 Score=33.29 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=18.6
Q ss_pred CCccEEEEecCcCccccCCchhhcccccccee
Q 038160 34 QSLTRLVVWYCDKLKYIFSASMIGNLKQLQHL 65 (270)
Q Consensus 34 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 65 (270)
++|++|++++. .++.+ +...+..+++|+.|
T Consensus 31 ~~l~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L 60 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTAL-PPGLLDALPALRTA 60 (130)
T ss_dssp TTCSEEECTTS-CCSSC-CTTTGGGCTTCCEE
T ss_pred cCCCEEECCCC-cCCcc-ChhhhhhccccCEE
Confidence 46778887764 45555 34445666666665
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=81.51 E-value=0.87 Score=37.37 Aligned_cols=62 Identities=24% Similarity=0.111 Sum_probs=36.7
Q ss_pred cccccceEEEecCcchhhhc--CCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEecCC
Q 038160 171 IFQYLEILGVYHSQSLLILL--PSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYGCR 235 (270)
Q Consensus 171 ~l~~L~~L~l~~c~~l~~~~--~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 235 (270)
.+++|+.|++++.. +..+. +.....+++|+.|++++. +++++........+ +|++|.+.+.+
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCc
Confidence 36788888888743 33321 222346888888888753 45544111112223 78888888876
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=78.14 E-value=0.9 Score=34.76 Aligned_cols=118 Identities=7% Similarity=-0.057 Sum_probs=66.2
Q ss_pred CCCCCCEEEecCccccccccccc-ccccccccccceEEEecCcchhhhc----CCCcccCcCCcEEEeeCCcCCcccCCh
Q 038160 143 KLAMIKELKLYRPYHLKQLCKQD-SKLGPIFQYLEILGVYHSQSLLILL----PSSSVSFRNLAKLVAFGCKELIHLVTS 217 (270)
Q Consensus 143 ~~~~L~~L~i~~c~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~----~~~~~~~~~L~~L~i~~c~~l~~l~~~ 217 (270)
..++|++|++++|.++..-.... .......++|++|++++|. +.+.. .......++|++|++++|. +.+-...
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHH
Confidence 37889999999985554311100 0011235789999999985 32211 1112345789999999873 4443222
Q ss_pred h---HHhhccCCcEEEE--ecCCCcceEeeccCCCCccceeecCccCeeecCCC
Q 038160 218 S---TAKTLVRLVKVQV--YGCRAMTEVVINDKDGVEKEEIVFCKLKTLQLFDL 266 (270)
Q Consensus 218 ~---~~~~l~~L~~L~i--~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (270)
. .....++|++|++ +++ .+.+.... .........+.|++|++.++
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~---~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEM---EIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHH---HHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHH---HHHHHHHhCCCcCEEeccCC
Confidence 2 2344578999999 555 34322100 00111113478999998765
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=74.82 E-value=4.7 Score=34.53 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=6.3
Q ss_pred cCCCccEEEEe
Q 038160 32 HFQSLTRLVVW 42 (270)
Q Consensus 32 ~l~~L~~L~l~ 42 (270)
.+.+|+.+.+.
T Consensus 85 ~C~~L~~i~~~ 95 (394)
T 4gt6_A 85 NCTSLKRVTIQ 95 (394)
T ss_dssp TCTTCCEEEEG
T ss_pred CCccCceEeec
Confidence 45566666553
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=71.64 E-value=12 Score=31.87 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=25.8
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEec
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVYG 233 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 233 (270)
+.+|+.+.+.+ .++.+....+..+.+|+++.|.+ +++.+ ....+..|.+|+.+++.+
T Consensus 310 c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I-~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 310 CISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKI-PESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBC-CGGGGTTCTTCCEEEESS
T ss_pred CCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEE-hHhHhhCCCCCCEEEECC
Confidence 34555555532 23333333334455566655542 23332 223345555666655554
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=55.00 E-value=7.9 Score=27.60 Aligned_cols=35 Identities=14% Similarity=-0.069 Sum_probs=15.7
Q ss_pred ccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCc
Q 038160 174 YLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCK 209 (270)
Q Consensus 174 ~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~ 209 (270)
+|++|+|++. .++.+.+..+..+++|+.|++.+.+
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 3444444442 2333333333445555555555443
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=42.69 E-value=27 Score=29.39 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=46.7
Q ss_pred CCCccEEEEeccccceecccccccCcccCcCCCccEEEEecCcCccccCCchhhccccccceeEeeeEEeccCCCcceec
Q 038160 3 LPNLEALEISAINVDKIWHYNQIPAAVFPHFQSLTRLVVWYCDKLKYIFSASMIGNLKQLQHLELTTLRLQGLPKLRCLY 82 (270)
Q Consensus 3 ~~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~L~L~~~~~L~~~~ 82 (270)
+.+|+.+.+.. +++.+ +...+..+.+|+.+.+.+. .++.+ +...+.++.+|+.+. |. .+++.+.
T Consensus 262 ~~~l~~i~l~~-~i~~i------~~~aF~~c~~L~~i~l~~~-~i~~I-~~~aF~~c~~L~~i~-----lp--~~l~~I~ 325 (379)
T 4h09_A 262 CTALKTLNFYA-KVKTV------PYLLCSGCSNLTKVVMDNS-AIETL-EPRVFMDCVKLSSVT-----LP--TALKTIQ 325 (379)
T ss_dssp CTTCCEEEECC-CCSEE------CTTTTTTCTTCCEEEECCT-TCCEE-CTTTTTTCTTCCEEE-----CC--TTCCEEC
T ss_pred eehhccccccc-cceec------ccccccccccccccccccc-cccee-hhhhhcCCCCCCEEE-----cC--ccccEEH
Confidence 45677776643 23332 3333447899999999753 35554 445578888888774 32 2344443
Q ss_pred CCccccCCCcccEEEec
Q 038160 83 PGMHTSEWPALEILSVH 99 (270)
Q Consensus 83 ~~~~~~~~~~L~~L~i~ 99 (270)
... ...|.+|+.+.+.
T Consensus 326 ~~a-F~~C~~L~~i~ip 341 (379)
T 4h09_A 326 VYA-FKNCKALSTISYP 341 (379)
T ss_dssp TTT-TTTCTTCCCCCCC
T ss_pred HHH-hhCCCCCCEEEEC
Confidence 322 2346777777664
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=24.57 E-value=2.1e+02 Score=23.63 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=29.1
Q ss_pred ccccceEEEecCcchhhhcCCCcccCcCCcEEEeeCCcCCcccCChhHHhhccCCcEEEEe
Q 038160 172 FQYLEILGVYHSQSLLILLPSSSVSFRNLAKLVAFGCKELIHLVTSSTAKTLVRLVKVQVY 232 (270)
Q Consensus 172 l~~L~~L~l~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 232 (270)
..+|+.+.+.. .++.+.......+.+|+++.+.+. .++.+. ...+..|.+|+.+.+.
T Consensus 262 ~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~-~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 262 CTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLE-PRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEEC-TTTTTTCTTCCEEECC
T ss_pred eehhccccccc--cceecccccccccccccccccccc-ccceeh-hhhhcCCCCCCEEEcC
Confidence 44555555532 233333333445677777776532 233332 2345566777777664
Done!