Query 038161
Match_columns 54
No_of_seqs 107 out of 633
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 13:52:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b75_A Protein (50S ribosomal 13.3 19 0.00064 20.2 -1.5 9 40-48 24-32 (94)
2 4dgl_A Casein kinase II subuni 10.2 74 0.0025 21.0 0.5 13 41-53 78-90 (215)
3 1qf8_A Casein kinase II; casei 9.6 81 0.0028 20.1 0.5 12 42-53 79-90 (182)
4 1wfw_A Kalirin-9A; SH3 domain, 9.0 49 0.0017 18.7 -0.7 7 40-46 58-64 (74)
5 2k42_B Espfu; WAsp, GBD, autoi 8.3 1.2E+02 0.004 15.0 0.6 10 15-24 4-13 (36)
6 2hjd_A Quorum-sensing antiacti 7.3 1.4E+02 0.0048 17.7 0.8 17 29-45 83-99 (102)
7 1rfy_A TRAM protein;, transcri 7.2 1.4E+02 0.0049 17.7 0.8 17 29-45 83-99 (102)
8 1g2y_A Hepatocyte nuclear fact 7.2 2.6E+02 0.0089 13.3 1.6 14 20-33 15-28 (32)
9 3qrx_B Melittin; calcium-bindi 7.0 2.2E+02 0.0074 12.9 1.2 18 8-25 6-23 (26)
10 2q0o_C Probable transcriptiona 7.0 1.8E+02 0.0062 17.4 1.2 17 29-45 85-101 (107)
No 1
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=13.27 E-value=19 Score=20.24 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=6.2
Q ss_pred Hhhhhhhhh
Q 038161 40 GYIPGIIYA 48 (54)
Q Consensus 40 g~~Pg~ihA 48 (54)
|.+||++|.
T Consensus 24 G~vPaVvYG 32 (94)
T 1b75_A 24 NKFPAIIYG 32 (94)
T ss_dssp TBCCEEEEC
T ss_pred CCceEEEEC
Confidence 567887763
No 2
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=10.22 E-value=74 Score=20.96 Aligned_cols=13 Identities=38% Similarity=0.656 Sum_probs=10.1
Q ss_pred hhhhhhhhhhhee
Q 038161 41 YIPGIIYAIYVLV 53 (54)
Q Consensus 41 ~~Pg~ihA~yii~ 53 (54)
-+=|+|||=||++
T Consensus 78 ~LYGLIHARYIlT 90 (215)
T 4dgl_A 78 MLYGLIHARYILT 90 (215)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHhhhhhHhheec
Confidence 3558999999875
No 3
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=9.61 E-value=81 Score=20.11 Aligned_cols=12 Identities=42% Similarity=0.716 Sum_probs=9.5
Q ss_pred hhhhhhhhhhee
Q 038161 42 IPGIIYAIYVLV 53 (54)
Q Consensus 42 ~Pg~ihA~yii~ 53 (54)
+=|+|||=||++
T Consensus 79 LYGLIHaRyIlT 90 (182)
T 1qf8_A 79 LYGLIHARYILT 90 (182)
T ss_dssp HHHHHHHHHTTS
T ss_pred Hhchhhhhhccc
Confidence 558899998865
No 4
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1
Probab=9.05 E-value=49 Score=18.75 Aligned_cols=7 Identities=57% Similarity=1.436 Sum_probs=5.3
Q ss_pred Hhhhhhh
Q 038161 40 GYIPGII 46 (54)
Q Consensus 40 g~~Pg~i 46 (54)
||+||.+
T Consensus 58 gWvPG~v 64 (74)
T 1wfw_A 58 GWVPGSI 64 (74)
T ss_dssp EEEEGGG
T ss_pred CcccccE
Confidence 6888865
No 5
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=8.29 E-value=1.2e+02 Score=14.97 Aligned_cols=10 Identities=40% Similarity=0.358 Sum_probs=8.1
Q ss_pred cchhhhhhHh
Q 038161 15 LPPVGVFLRY 24 (54)
Q Consensus 15 lPPlaV~~~~ 24 (54)
+||+|-.++.
T Consensus 4 LPpIAQaLk~ 13 (36)
T 2k42_B 4 LPDVAQRLMQ 13 (36)
T ss_dssp CSSHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 7999988874
No 6
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=7.31 E-value=1.4e+02 Score=17.71 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhhhh
Q 038161 29 EFWICLLLTVLGYIPGI 45 (54)
Q Consensus 29 ~~~in~lLtllg~~Pg~ 45 (54)
..-+|-++-.+||+|-+
T Consensus 83 q~~lstli~~LGyvP~v 99 (102)
T 2hjd_A 83 MSAVNTLVGLLGFIPKV 99 (102)
T ss_dssp HHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 45788899999999854
No 7
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=7.24 E-value=1.4e+02 Score=17.68 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhhhh
Q 038161 29 EFWICLLLTVLGYIPGI 45 (54)
Q Consensus 29 ~~~in~lLtllg~~Pg~ 45 (54)
..-+|-++-.+||+|-+
T Consensus 83 q~~lstli~~LGyvP~v 99 (102)
T 1rfy_A 83 MSALNTLISILGFIPKV 99 (102)
T ss_dssp HHHHHHHHHHHTSCCC-
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 45788899999999964
No 8
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=7.23 E-value=2.6e+02 Score=13.30 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=9.5
Q ss_pred hhhHhccchHHHHH
Q 038161 20 VFLRYGCGVEFWIC 33 (54)
Q Consensus 20 V~~~~G~~~~~~in 33 (54)
-.+.+|.+||.+|-
T Consensus 15 aLL~SGlsKe~Liq 28 (32)
T 1g2y_A 15 ALLESGLSKEALIQ 28 (32)
T ss_dssp HHHHTTCCHHHHHH
T ss_pred HHHHcCCcHHHHHH
Confidence 34567888887653
No 9
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=7.03 E-value=2.2e+02 Score=12.95 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=13.3
Q ss_pred HHHHHHhcchhhhhhHhc
Q 038161 8 EVILAILLPPVGVFLRYG 25 (54)
Q Consensus 8 ~~ilai~lPPlaV~~~~G 25 (54)
+=.++-.+||+.-++|+.
T Consensus 6 LKVLa~~LP~liSWiK~k 23 (26)
T 3qrx_B 6 LKVLTTGLPALISWIKRK 23 (26)
T ss_pred HHHHHccchHHHHHHHHH
Confidence 345677899998888753
No 10
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=7.00 E-value=1.8e+02 Score=17.37 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhhhh
Q 038161 29 EFWICLLLTVLGYIPGI 45 (54)
Q Consensus 29 ~~~in~lLtllg~~Pg~ 45 (54)
+.-+|-++-.+||+|-+
T Consensus 85 q~~lstLid~LGyvPkV 101 (107)
T 2q0o_C 85 QEELSDILDALGFVPDV 101 (107)
T ss_dssp HHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 46789999999999954
Done!