Query 038161
Match_columns 54
No_of_seqs 107 out of 633
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 13:52:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038161.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038161hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dfup_ b.53.1.1 (P:) Ribosoma 18.1 5.2 0.00038 21.3 -1.6 9 40-48 24-32 (94)
2 d1vjka_ d.15.3.1 (A:) Molybdop 11.2 19 0.0014 17.9 -0.5 6 14-19 83-88 (88)
3 d1g2ya_ a.34.2.1 (A:) Hepatocy 11.1 70 0.0051 13.9 1.6 16 18-33 13-28 (31)
4 d1lnsa1 a.40.2.1 (A:1-145) X-P 10.0 64 0.0046 18.5 1.6 25 21-45 62-88 (145)
5 d1fm0d_ d.15.3.1 (D:) Molybdop 9.6 21 0.0015 17.8 -0.7 6 14-19 74-79 (81)
6 d1rfya_ a.2.13.1 (A:) Transcri 9.4 48 0.0035 17.9 0.8 13 31-43 76-88 (89)
7 d1qf8a_ g.41.4.1 (A:) Casein k 8.7 43 0.0032 19.7 0.5 12 42-53 73-84 (173)
8 d1oedc_ f.36.1.1 (C:) Acetylch 8.7 1.8E+02 0.013 16.2 3.7 27 8-39 18-44 (260)
9 d2iuba2 f.17.3.1 (A:286-349) M 8.4 85 0.0062 14.8 1.5 22 5-26 7-28 (64)
10 d1gtra2 c.26.1.1 (A:8-338) Glu 8.1 94 0.0068 19.0 1.9 26 18-44 286-311 (331)
No 1
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=18.09 E-value=5.2 Score=21.33 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=6.7
Q ss_pred Hhhhhhhhh
Q 038161 40 GYIPGIIYA 48 (54)
Q Consensus 40 g~~Pg~ihA 48 (54)
|++||++|.
T Consensus 24 G~vPaViYG 32 (94)
T d1dfup_ 24 NKFPAIIYG 32 (94)
T ss_dssp TEEEEEEEC
T ss_pred CCccEEEEC
Confidence 678888773
No 2
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}
Probab=11.16 E-value=19 Score=17.91 Aligned_cols=6 Identities=50% Similarity=1.265 Sum_probs=2.9
Q ss_pred hcchhh
Q 038161 14 LLPPVG 19 (54)
Q Consensus 14 ~lPPla 19 (54)
++||++
T Consensus 83 i~PPVs 88 (88)
T d1vjka_ 83 VFPPVS 88 (88)
T ss_dssp EESCC-
T ss_pred EeCCCC
Confidence 456653
No 3
>d1g2ya_ a.34.2.1 (A:) Hepatocyte nuclear factor 1 (HNF-1), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.10 E-value=70 Score=13.94 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=11.4
Q ss_pred hhhhhHhccchHHHHH
Q 038161 18 VGVFLRYGCGVEFWIC 33 (54)
Q Consensus 18 laV~~~~G~~~~~~in 33 (54)
+|..+.+|.+++-+|-
T Consensus 13 laallesgl~ke~li~ 28 (31)
T d1g2ya_ 13 LAALLESGLSKEALIQ 28 (31)
T ss_dssp HHHHHHTTCCHHHHHH
T ss_pred HHHHHHcCCcHHHHHH
Confidence 4556778999887664
No 4
>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=10.00 E-value=64 Score=18.47 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=20.5
Q ss_pred hhHh--ccchHHHHHHHHHHHHhhhhh
Q 038161 21 FLRY--GCGVEFWICLLLTVLGYIPGI 45 (54)
Q Consensus 21 ~~~~--G~~~~~~in~lLtllg~~Pg~ 45 (54)
|+++ ..+.+.+-|+.|=++|+.|++
T Consensus 62 fl~s~~~lt~~vFY~VALQLLgF~~~~ 88 (145)
T d1lnsa1 62 FLKSSIELDWEIFWNIALQLLDFVPNF 88 (145)
T ss_dssp HHHSSCCCCHHHHHHHHHHHTTCCBTT
T ss_pred HHcCCCcCCHHHHHHHHHHHcCCcccc
Confidence 4444 368899999999999999985
No 5
>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}
Probab=9.58 E-value=21 Score=17.80 Aligned_cols=6 Identities=50% Similarity=1.193 Sum_probs=3.3
Q ss_pred hcchhh
Q 038161 14 LLPPVG 19 (54)
Q Consensus 14 ~lPPla 19 (54)
++||++
T Consensus 74 i~PPVs 79 (81)
T d1fm0d_ 74 FFPPVT 79 (81)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 456653
No 6
>d1rfya_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}
Probab=9.42 E-value=48 Score=17.89 Aligned_cols=13 Identities=38% Similarity=0.892 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhh
Q 038161 31 WICLLLTVLGYIP 43 (54)
Q Consensus 31 ~in~lLtllg~~P 43 (54)
-+|-++.++|++|
T Consensus 76 Av~tLi~iLG~iP 88 (89)
T d1rfya_ 76 ALNTLISILGFIP 88 (89)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHhccCC
Confidence 4677888888877
No 7
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.73 E-value=43 Score=19.66 Aligned_cols=12 Identities=42% Similarity=0.716 Sum_probs=9.5
Q ss_pred hhhhhhhhhhee
Q 038161 42 IPGIIYAIYVLV 53 (54)
Q Consensus 42 ~Pg~ihA~yii~ 53 (54)
+=|+|||=|+++
T Consensus 73 LYGLIHaRyI~T 84 (173)
T d1qf8a_ 73 LYGLIHARYILT 84 (173)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHhhhheeec
Confidence 458899998874
No 8
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.69 E-value=1.8e+02 Score=16.17 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=14.0
Q ss_pred HHHHHHhcchhhhhhHhccchHHHHHHHHHHH
Q 038161 8 EVILAILLPPVGVFLRYGCGVEFWICLLLTVL 39 (54)
Q Consensus 8 ~~ilai~lPPlaV~~~~G~~~~~~in~lLtll 39 (54)
+.++++.+||= +|=...+-++.+|++.
T Consensus 18 l~~~~f~lp~~-----~~~r~~l~it~lLs~~ 44 (260)
T d1oedc_ 18 LASLAFYLPAE-----SGEKMSTAISVLLAQA 44 (260)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred HHHHHeeeCCC-----CCCcEEeeHHHHHHHH
Confidence 44556667773 2333345555555443
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=8.37 E-value=85 Score=14.77 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcchhhhhhHhcc
Q 038161 5 TFLEVILAILLPPVGVFLRYGC 26 (54)
Q Consensus 5 ~~~~~ilai~lPPlaV~~~~G~ 26 (54)
+.+.++-++++||-.+.=-.|.
T Consensus 7 k~lT~it~iflP~t~i~gifGM 28 (64)
T d2iuba2 7 KVLTIIATIFMPLTFIAGIYGM 28 (64)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 4667778888888766433343
No 10
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=8.07 E-value=94 Score=19.02 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=19.9
Q ss_pred hhhhhHhccchHHHHHHHHHHHHhhhh
Q 038161 18 VGVFLRYGCGVEFWICLLLTVLGYIPG 44 (54)
Q Consensus 18 laV~~~~G~~~~~~in~lLtllg~~Pg 44 (54)
+.-+-+.|...+-+.|.+. .+||=|+
T Consensus 286 l~~lr~~G~~peai~nyla-~LGws~~ 311 (331)
T d1gtra2 286 ISGLRRRGYTAASIREFCK-RIGVTKQ 311 (331)
T ss_dssp HHHHHHHTCCHHHHHHHHH-HHCCCSS
T ss_pred HHHHHHCCCCHHHHHHHHH-HhCCCCC
Confidence 4445556999999999887 8999765
Done!