BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038162
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 73.2 bits (178), Expect = 4e-14, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 67/129 (51%), Gaps = 9/129 (6%)
Query: 1 EEGYRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
EE + R +L V+ + I + LGLS F+++I+E+L +
Sbjct: 30 EERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEIL----GVIY 85
Query: 61 NDTGC-----LQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGP 115
N+ C ++ DLY TAL F+LLRQHG+ ISQDVF F +E G F S D KG
Sbjct: 86 NEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGM 145
Query: 116 IELCEASQL 124
++L EAS L
Sbjct: 146 LQLYEASFL 154
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 2 EGYRSRAEKLKNDVK-QMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
E Y+ +A+KL+ +V+ ++ ID + +LGL Y FE IR L V+
Sbjct: 40 EVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGG 99
Query: 61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
D G + L+ATAL F+LLRQHG+E+SQ+ F F D+ G K D K + L E
Sbjct: 100 FD-GVTKTS-LHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLK-EDTKAILSLYE 156
Query: 121 ASQLALE 127
AS LALE
Sbjct: 157 ASFLALE 163
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 1 EEGYRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
EE + RA + + VK M ID + +LG+S FE +I E+L ++ +
Sbjct: 59 EEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEIL-NSKYYTN 117
Query: 61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
N+ + +DLY+TAL F+LLRQ+ + +SQ+VF F + GT F S D +G ++L E
Sbjct: 118 NE---IDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYE 174
Query: 121 ASQLALE 127
AS L+ +
Sbjct: 175 ASFLSAQ 181
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 70.1 bits (170), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 7 RAEKLKNDVKQMFXX-XXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGC 65
R ++LK +V++M ID + +LG+SY F ++I + L + + ND
Sbjct: 51 RHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDEL-ENIYHNNNDAE- 108
Query: 66 LQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQL 124
DLY T++ F+LLR+HGY +S DVF F DE G F +S +D++G +EL +AS L
Sbjct: 109 ---NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQG-NFKSSVTSDVRGLLELYQASYL 163
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 66.6 bits (161), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 32 IDRICKLGLSYLFEEKIREVLVDTVAFLKNDTG-----CLQVKDLYATALCFKLLRQHGY 86
+DR+ +LG+S FEE+I+E L D V D G C V+D+ TA+ F+LLRQHGY
Sbjct: 252 VDRLQRLGISRYFEEEIKECL-DYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGY 310
Query: 87 EISQDVFLDFMDETG-TTFSTSKCTDIKGPIELCEASQLAL 126
++S DVF +F E F + G L ASQLA
Sbjct: 311 QVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAF 351
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2 EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
E Y E LK + M ID I +LG+SY FE++I ++L D +
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 96
Query: 61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
++ C DL +AL F+LLRQHG+ IS ++F F DE G F S +D+ G + L E
Sbjct: 97 QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
AS +
Sbjct: 153 ASHV 156
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 66.2 bits (160), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2 EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
E Y E LK + M ID I +LG+SY FE++I E+L D +
Sbjct: 40 EKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEIL-DQI--YN 96
Query: 61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
++ C DL +AL F+LLRQHG+ IS ++F F DE G F S +D+ G + L E
Sbjct: 97 QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
AS +
Sbjct: 153 ASHV 156
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 66.2 bits (160), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2 EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
E Y E LK + M ID I +LG+SY FE++I E+L D +
Sbjct: 40 EKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEIL-DQI--YN 96
Query: 61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
++ C DL +AL F+LLRQHG+ IS ++F F DE G F S +D+ G + L E
Sbjct: 97 QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
AS +
Sbjct: 153 ASHV 156
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2 EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
E Y E LK + M ID I +LG+SY FE++I ++L D +
Sbjct: 27 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 83
Query: 61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
++ C DL +AL F+LLRQHG+ IS ++F F DE G F S +D+ G + L E
Sbjct: 84 QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 139
Query: 121 ASQL 124
AS +
Sbjct: 140 ASHV 143
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2 EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
E Y E LK + M ID I +LG+SY FE++I ++L D +
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 96
Query: 61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
++ C DL +AL F+LLRQHG+ IS ++F F DE G F S +D+ G + L E
Sbjct: 97 QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
AS +
Sbjct: 153 ASHV 156
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 65.9 bits (159), Expect = 7e-12, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2 EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
E Y E LK + M ID I +LG+SY FE++I ++L D +
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 96
Query: 61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
++ C DL +AL F+LLRQHG+ IS ++F F DE G F S +D+ G + L E
Sbjct: 97 QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
AS +
Sbjct: 153 ASHV 156
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 65.9 bits (159), Expect = 7e-12, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2 EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
E Y E LK + M ID I +LG+SY FE++I ++L D +
Sbjct: 42 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 98
Query: 61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
++ C DL +AL F+LLRQHG+ IS ++F F DE G F S +D+ G + L E
Sbjct: 99 QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 154
Query: 121 ASQL 124
AS +
Sbjct: 155 ASHV 158
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 65.9 bits (159), Expect = 7e-12, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2 EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
E Y E LK + M ID I +LG+SY FE++I ++L D +
Sbjct: 42 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 98
Query: 61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
++ C DL +AL F+LLRQHG+ IS ++F F DE G F S +D+ G + L E
Sbjct: 99 QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 154
Query: 121 ASQL 124
AS +
Sbjct: 155 ASHV 158
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 65.5 bits (158), Expect = 7e-12, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2 EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
E Y E LK + M ID I +LG+SY FE++I ++L D +
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 96
Query: 61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
++ C DL +AL F+LLRQHG+ IS ++F F DE G F S +D+ G + L E
Sbjct: 97 QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
AS +
Sbjct: 153 ASHV 156
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 1 EEGYRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVA--- 57
E+ + RA +L VK ID + ++GLS F+ + +E+L
Sbjct: 26 EDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHH 85
Query: 58 FLKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIE 117
+ KN + +DLY+T+L F+LLR+HG++++Q+VF F +E G F S D +G ++
Sbjct: 86 YYKNPFP-KEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEG-EFKESLSDDTRGLLQ 143
Query: 118 LCEASQLALE 127
L EAS L E
Sbjct: 144 LYEASFLLTE 153
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 32 IDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGC-----LQVKDLYATALCFKLLRQHGY 86
+D I +LG+ FE++I+E L D V N+ G + DL TAL F+LLR H Y
Sbjct: 305 VDNIVRLGIYRHFEKEIKEAL-DYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRY 363
Query: 87 EISQDVFLDFMDETGTTF-STSKCT-DIKGPIELCEASQLAL 126
+S +F +F D G ST + D+ + L ASQLA
Sbjct: 364 NVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAF 405
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 32 IDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGC-----LQVKDLYATALCFKLLRQHGY 86
+D I LG+ F+++I+ L D V ++ G V DL TAL + LR HGY
Sbjct: 253 VDNIEHLGIGRHFKQEIKGAL-DYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGY 311
Query: 87 EISQDVFLDFMDETGTTFSTSKCT--DIKGPIELCEASQLAL 126
+S DV +F DE G FS++ T +++ + L AS LA
Sbjct: 312 NVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAF 353
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 32 IDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGC-----LQVKDLYATALCFKLLRQHGY 86
+D + +LG+ F+E+I+E L D V ++ G V D+ TA+ ++LR HGY
Sbjct: 277 VDTVERLGIDRHFKEEIKEAL-DYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGY 335
Query: 87 EISQDVFLDFMDETGTTF 104
+S DV F DE G F
Sbjct: 336 NVSSDVLKTFRDENGEFF 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,037,014
Number of Sequences: 62578
Number of extensions: 98154
Number of successful extensions: 234
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 21
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)