Query 038162
Match_columns 127
No_of_seqs 118 out of 700
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ong_A 4S-limonene synthase; m 100.0 3.6E-46 1.2E-50 323.5 14.8 125 2-127 27-153 (543)
2 3n0f_A Isoprene synthase; terp 100.0 9.4E-46 3.2E-50 322.5 14.2 123 2-127 40-163 (555)
3 3m00_A Aristolochene synthase; 100.0 1E-45 3.5E-50 322.1 13.3 119 2-127 42-161 (550)
4 1n1b_A (+)-bornyl diphosphate 100.0 1.2E-45 4.1E-50 320.9 12.6 126 2-127 31-157 (549)
5 3g4d_A (+)-delta-cadinene synt 100.0 2.1E-45 7.3E-50 320.3 12.8 120 2-127 46-166 (554)
6 2j5c_A 1,8-cineole synthase; t 100.0 3.7E-45 1.3E-49 319.0 13.3 121 2-127 60-181 (569)
7 3p5p_A Taxadiene synthase; cla 100.0 3.2E-35 1.1E-39 263.7 11.7 104 23-127 244-354 (764)
8 3sdr_A Alpha-bisabolene syntha 100.0 2.2E-35 7.5E-40 266.3 10.5 104 23-127 296-406 (817)
9 3s9v_A Abietadiene synthase, c 100.0 3.8E-35 1.3E-39 263.8 11.5 104 23-127 268-378 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 8.4E-35 2.9E-39 260.0 11.6 121 5-127 220-352 (727)
11 1c07_A Protein (epidermal grow 77.4 9.6 0.00033 24.2 6.5 72 13-91 10-86 (95)
12 1pd3_A Nonstructural protein N 76.3 1.4 4.8E-05 27.4 2.0 33 6-38 16-48 (58)
13 1qjt_A EH1, epidermal growth f 66.7 20 0.00068 23.1 6.2 75 13-94 11-89 (99)
14 1fi6_A EH domain protein REPS1 52.7 18 0.0006 22.7 3.8 73 12-91 8-84 (92)
15 2kng_A Protein LSR2; DNA-bindi 49.6 7.7 0.00026 24.0 1.6 27 81-124 22-48 (55)
16 1eh2_A EPS15; calcium binding, 44.1 49 0.0017 21.7 5.2 73 12-91 14-89 (106)
17 1b0n_B Protein (SINI protein); 36.1 46 0.0016 20.4 3.6 28 24-54 11-38 (57)
18 2jq6_A EH domain-containing pr 32.3 79 0.0027 22.1 4.9 74 12-93 50-127 (139)
19 1q08_A Zn(II)-responsive regul 32.1 57 0.002 20.6 3.9 27 25-54 2-28 (99)
20 2e5n_A RNA polymerase II elong 31.4 1E+02 0.0036 20.9 5.2 44 11-56 14-57 (100)
21 2doa_A RNA polymerase II elong 28.7 82 0.0028 21.6 4.3 44 11-56 13-56 (104)
22 2of3_A ZYG-9; multifunctional 27.2 51 0.0017 25.7 3.4 83 6-90 34-127 (266)
23 1iq3_A Ralbp1-interacting prot 26.1 32 0.0011 22.7 1.8 71 13-91 22-97 (110)
24 3vmx_A Voltage-gated hydrogen 23.8 26 0.00088 21.1 0.8 8 79-86 39-46 (48)
25 1y2k_A DPDE3, PDE43, CAMP-spec 23.2 32 0.0011 27.8 1.6 44 38-88 141-184 (349)
26 3zyq_A Hepatocyte growth facto 22.9 94 0.0032 23.2 4.1 22 69-90 124-145 (226)
27 3dyn_A High affinity CGMP-spec 22.8 41 0.0014 27.1 2.2 44 38-88 120-163 (329)
28 3sdr_A Alpha-bisabolene syntha 22.2 60 0.0021 29.4 3.3 19 2-20 50-68 (817)
29 3a2a_A Voltage-gated hydrogen 22.1 27 0.00094 21.7 0.8 9 79-87 46-54 (58)
30 1f0j_A PDE4B, phosphodiesteras 21.5 32 0.0011 28.2 1.3 44 38-88 128-171 (377)
31 1taz_A Calcium/calmodulin-depe 20.6 44 0.0015 27.2 2.0 19 70-88 152-170 (365)
No 1
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=3.6e-46 Score=323.50 Aligned_cols=125 Identities=35% Similarity=0.529 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCC-CC-CCChHHHHHHHH
Q 038162 2 EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGC-LQ-VKDLYATALCFK 79 (127)
Q Consensus 2 ~~~~~~~~~LkeeVk~~l~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~-~~-~~dL~~~AL~FR 79 (127)
+.+.+++++||++||+|+.+..|++++|++||+||||||+|||++||+++|+.||++|..+... .. ..|||+|||+||
T Consensus 27 ~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~al~FR 106 (543)
T 2ong_A 27 DKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFR 106 (543)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCCCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccccccccccCCHHHHHHHHH
Confidence 3578999999999999998777999999999999999999999999999999999766431100 11 269999999999
Q ss_pred HHHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162 80 LLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE 127 (127)
Q Consensus 80 LLRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~ 127 (127)
|||||||+||||||++|||++| +|++++.+||+|||||||||||+++
T Consensus 107 lLR~hGy~vs~dvf~~Fk~~~g-~F~~~l~~d~~glL~Ly~As~l~~~ 153 (543)
T 2ong_A 107 LLREHGFQVAQEVFDSFKNEEG-EFKESLSDDTRGLLQLYEASFLLTE 153 (543)
T ss_dssp HHHHTTCCCCGGGGGGGBCTTS-SBCTTGGGCHHHHHHHHHHHTTCCS
T ss_pred HHHHcCCCccHHHHhcccCCCC-CccchhhhccHHHHHHHHHHHcCCC
Confidence 9999999999999999999999 9999999999999999999999985
No 2
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=9.4e-46 Score=322.53 Aligned_cols=123 Identities=42% Similarity=0.603 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh-cHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHH
Q 038162 2 EGYRSRAEKLKNDVKQMFLEAA-DLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKL 80 (127)
Q Consensus 2 ~~~~~~~~~LkeeVk~~l~~~~-~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRL 80 (127)
+.+.+|+++||++||+||.+.. +++++|++||+||||||+|||++||+++|+.||+.... .+....|||+|||+|||
T Consensus 40 ~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~--~~~~~~DL~~~Al~FRL 117 (555)
T 3n0f_A 40 EVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGF--DGVTKTSLHATALSFRL 117 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTCHH--HHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhccc--cccccCCHHHHHHHHHH
Confidence 4678999999999999997666 89999999999999999999999999999999953110 00011699999999999
Q ss_pred HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162 81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE 127 (127)
Q Consensus 81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~ 127 (127)
||||||+||||||++|+|++| +|++++.+||+|||+|||||||+++
T Consensus 118 LR~hGy~VS~dvF~~F~d~~G-~F~~~l~~dv~glL~LYeAs~l~~~ 163 (555)
T 3n0f_A 118 LRQHGFEVSQEAFSGFKDQNG-NFLENLKEDTKAILSLYEASFLALE 163 (555)
T ss_dssp HHHTTCCCCGGGGGGGBCTTS-CBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred HHhcCCCcChHHHhcccccCc-cchhhhhhhhHHHHHHHHHHhcccC
Confidence 999999999999999999999 9999999999999999999999985
No 3
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1e-45 Score=322.05 Aligned_cols=119 Identities=40% Similarity=0.652 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHHHHHHh-hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHH
Q 038162 2 EGYRSRAEKLKNDVKQMFLE-AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKL 80 (127)
Q Consensus 2 ~~~~~~~~~LkeeVk~~l~~-~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRL 80 (127)
+.+.+|+++||++||+||.+ ..+++++|+|||+||||||+|||++||+++|++||++|.. . .|||+|||+|||
T Consensus 42 ~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~-----~-~dl~~~al~FRL 115 (550)
T 3m00_A 42 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSN-----C-NDLCTSALQFRL 115 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHCCC-----C-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhccc-----C-CCHHHHHHHHHH
Confidence 45788999999999999975 5799999999999999999999999999999999976532 2 699999999999
Q ss_pred HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162 81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE 127 (127)
Q Consensus 81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~ 127 (127)
||||||+||||||++|+|++| +|++++.+||+|||+|||||||+++
T Consensus 116 LR~hGy~VS~dvf~~F~~~~G-~F~~~l~~d~~glL~LYeAs~l~~~ 161 (550)
T 3m00_A 116 LRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYEASHVRTH 161 (550)
T ss_dssp HHHTTCCCCGGGGGGGBCTTS-CBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred HHhcCCCCChHHhhhccccCC-CccccchhchHHHHHHHHHHhcCCC
Confidence 999999999999999999999 9999999999999999999999985
No 4
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.2e-45 Score=320.89 Aligned_cols=126 Identities=40% Similarity=0.511 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccC-CCCCCCChHHHHHHHHH
Q 038162 2 EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDT-GCLQVKDLYATALCFKL 80 (127)
Q Consensus 2 ~~~~~~~~~LkeeVk~~l~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~-~~~~~~dL~~~AL~FRL 80 (127)
+.+.+++++||++||+|+.+..|++++|++||+||||||+|||++||+++|++||+++.... ......|||+|||+|||
T Consensus 31 ~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRl 110 (549)
T 1n1b_A 31 ERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRL 110 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhhhhH
Confidence 35789999999999999987679999999999999999999999999999999997542200 11012699999999999
Q ss_pred HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162 81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE 127 (127)
Q Consensus 81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~ 127 (127)
||||||+||||||++|||++|++|++++.+||+|||||||||||+++
T Consensus 111 LR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~ 157 (549)
T 1n1b_A 111 LRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRK 157 (549)
T ss_dssp HHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred HHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCC
Confidence 99999999999999999999878999999999999999999999985
No 5
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=2.1e-45 Score=320.29 Aligned_cols=120 Identities=38% Similarity=0.656 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHHHHHHHh-hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHH
Q 038162 2 EGYRSRAEKLKNDVKQMFLE-AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKL 80 (127)
Q Consensus 2 ~~~~~~~~~LkeeVk~~l~~-~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRL 80 (127)
+.+.+|+++||++||+||.+ ..+++++|+|||+||||||+|||++||+++|++||++ . .... .|||+|||+|||
T Consensus 46 ~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~--~--~~~~-~dl~~~al~FRl 120 (554)
T 3g4d_A 46 AETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN--N--NDAE-NDLYTTSIRFRL 120 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS--C--CCTT-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc--c--CCCC-CCHHHHHHHHHH
Confidence 46789999999999999975 5799999999999999999999999999999999954 2 2112 699999999999
Q ss_pred HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162 81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE 127 (127)
Q Consensus 81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~ 127 (127)
||||||+||||||++|+|++| +|++++.+||+|||+|||||||+++
T Consensus 121 LR~hGy~VS~dvf~~F~~~~g-~F~~~l~~d~~glL~LYeAs~l~~~ 166 (554)
T 3g4d_A 121 LREHGYNVSCDVFNKFKDEQG-NFKSSVTSDVRGLLELYQASYLRVH 166 (554)
T ss_dssp HHHTTCCCCGGGGGGGBCTTS-SBCHHHHHCHHHHHHHHHHHTTCCT
T ss_pred HHhcCCCCChhHHhhhcccCC-CcccccccchHHHHHHHHHHhCCCC
Confidence 999999999999999999999 9999999999999999999999985
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=3.7e-45 Score=319.02 Aligned_cols=121 Identities=40% Similarity=0.563 Sum_probs=110.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHH-HhhcccCCCCCCCChHHHHHHHHH
Q 038162 2 EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTV-AFLKNDTGCLQVKDLYATALCFKL 80 (127)
Q Consensus 2 ~~~~~~~~~LkeeVk~~l~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~-~~~~~~~~~~~~~dL~~~AL~FRL 80 (127)
+.+.+++++||++||+|+.+..|++++|++||+||||||+|||++||+++|+.|| +++. + ...|||+|||+|||
T Consensus 60 ~~~~~~~~~Lk~~Vr~~~~~~~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~----~-~~~Dl~~~al~FRl 134 (569)
T 2j5c_A 60 EKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNE----I-DERDLYSTALRFRL 134 (569)
T ss_dssp --CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCC----S-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccC----c-ccCChhhhhHHhHH
Confidence 3577899999999999998777999999999999999999999999999999998 5422 1 12699999999999
Q ss_pred HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162 81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE 127 (127)
Q Consensus 81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~ 127 (127)
||||||+||||||++|||++|++|++++.+||+|||||||||||+++
T Consensus 135 LR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~ 181 (569)
T 2j5c_A 135 LRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQ 181 (569)
T ss_dssp HHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred HHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCC
Confidence 99999999999999999999879999999999999999999999985
No 7
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=3.2e-35 Score=263.67 Aligned_cols=104 Identities=37% Similarity=0.569 Sum_probs=92.1
Q ss_pred hcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhccc-CCC--CC-CCChHHHHHHHHHHHhcCcceehhhhhcccc
Q 038162 23 ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKND-TGC--LQ-VKDLYATALCFKLLRQHGYEISQDVFLDFMD 98 (127)
Q Consensus 23 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~-~~~--~~-~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d 98 (127)
.+++++|++||+||||||+|||++||+++|+.||++|... .+. .+ ..||++|||+|||||||||+||||||++|+|
T Consensus 244 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d 323 (764)
T 3p5p_A 244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKD 323 (764)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhc
Confidence 5899999999999999999999999999999999866431 010 11 2599999999999999999999999999999
Q ss_pred ccccccccc---cccchHHHHHHhHhhccCCC
Q 038162 99 ETGTTFSTS---KCTDIKGPIELCEASQLALE 127 (127)
Q Consensus 99 ~~G~~F~~~---l~~DvkglL~LYeAS~L~~~ 127 (127)
++| +|+.+ +.+|++|||+|||||||+++
T Consensus 324 ~~g-~F~~~~~~~~~dv~gmL~LYeAS~l~~~ 354 (764)
T 3p5p_A 324 ENG-RFFSSAGQTHVELRSVVNLFRASDLAFP 354 (764)
T ss_dssp TTS-CBCSCTTCSCCCHHHHHHHHHHHTTCCT
T ss_pred CCC-CccccccccccccHHHHHHHHHHhCCCC
Confidence 999 99874 68999999999999999985
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=2.2e-35 Score=266.25 Aligned_cols=104 Identities=38% Similarity=0.600 Sum_probs=90.2
Q ss_pred hcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhccc-CCC--CC-CCChHHHHHHHHHHHhcCcceehhhhhcccc
Q 038162 23 ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKND-TGC--LQ-VKDLYATALCFKLLRQHGYEISQDVFLDFMD 98 (127)
Q Consensus 23 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~-~~~--~~-~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d 98 (127)
.+++++|++||+||||||+|||++||+++|+.||++|... .+. .+ ..||++|||+|||||||||+||||||++|+|
T Consensus 296 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d 375 (817)
T 3sdr_A 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKD 375 (817)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhh
Confidence 5899999999999999999999999999999999866531 010 11 2599999999999999999999999999999
Q ss_pred cccccccccc---ccchHHHHHHhHhhccCCC
Q 038162 99 ETGTTFSTSK---CTDIKGPIELCEASQLALE 127 (127)
Q Consensus 99 ~~G~~F~~~l---~~DvkglL~LYeAS~L~~~ 127 (127)
++| +|+.++ .+||+|||+|||||||+++
T Consensus 376 ~~g-~F~~~~~~~~~dv~gmL~LYeAS~l~~~ 406 (817)
T 3sdr_A 376 ANG-KFICSTGQFNKDVASMLNLYRASQLAFP 406 (817)
T ss_dssp C---CBCCCSSCHHHHHHHHHHHHHHHTTCCT
T ss_pred cCC-CceechhhhchhhHHHHHHHHHHhcCCC
Confidence 999 999865 5899999999999999985
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=3.8e-35 Score=263.83 Aligned_cols=104 Identities=29% Similarity=0.476 Sum_probs=92.2
Q ss_pred hcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccC-CC--CC-CCChHHHHHHHHHHHhcCcceehhhhhcccc
Q 038162 23 ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDT-GC--LQ-VKDLYATALCFKLLRQHGYEISQDVFLDFMD 98 (127)
Q Consensus 23 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~-~~--~~-~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d 98 (127)
.+++++|++||+||||||+|||++||+++|+.||++|.... +. .+ ..||++|||+|||||||||+||||||++|+|
T Consensus 268 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d 347 (785)
T 3s9v_A 268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRD 347 (785)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 48999999999999999999999999999999997664310 10 11 1599999999999999999999999999999
Q ss_pred cccccccccc---ccchHHHHHHhHhhccCCC
Q 038162 99 ETGTTFSTSK---CTDIKGPIELCEASQLALE 127 (127)
Q Consensus 99 ~~G~~F~~~l---~~DvkglL~LYeAS~L~~~ 127 (127)
++| +|+.++ .+||+|||+|||||||+++
T Consensus 348 ~~g-~F~~~~~e~~~dv~g~L~LYeAS~l~~~ 378 (785)
T 3s9v_A 348 ENG-EFFCFLGQTQRGVTDMLNVNRCSHVSFP 378 (785)
T ss_dssp TTS-CBCSSTTCCCCCHHHHHHHHHHHTSCCT
T ss_pred cCC-CeeeccccccccccccHHHHhHhhcCCC
Confidence 999 999866 6999999999999999985
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=8.4e-35 Score=259.95 Aligned_cols=121 Identities=36% Similarity=0.562 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHhh-----hcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhccc-CCC--C-CCCChHHHH
Q 038162 5 RSRAEKLKNDVKQMFLEA-----ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKND-TGC--L-QVKDLYATA 75 (127)
Q Consensus 5 ~~~~~~LkeeVk~~l~~~-----~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~-~~~--~-~~~dL~~~A 75 (127)
.+..+-|+..|++..... .+++++|++||+||||||+|||++||+++|+.+|++|... ... . ...||++||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tA 299 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTA 299 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHH
Confidence 345667888888875432 5899999999999999999999999999999999876431 010 1 125999999
Q ss_pred HHHHHHHhcCcceehhhhhccccccccccccc---cccchHHHHHHhHhhccCCC
Q 038162 76 LCFKLLRQHGYEISQDVFLDFMDETGTTFSTS---KCTDIKGPIELCEASQLALE 127 (127)
Q Consensus 76 L~FRLLRqhGy~VS~DvF~~F~d~~G~~F~~~---l~~DvkglL~LYeAS~L~~~ 127 (127)
|+|||||||||+||||||++|+ ++| +|+.. ..+|++|||+|||||||+++
T Consensus 300 L~FRLLRqhGy~VS~DvF~~Fk-~~G-~F~~~~~e~~~Dv~glLsLYeAS~l~~~ 352 (727)
T 3pya_A 300 MAFRLLRQHGYQVSADVFKNFE-KEG-EFFCFVGQSNQAVTGMFNLYRASQLAFP 352 (727)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGE-ETT-EECSSTTCCCCCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhCCCCCCHHHHHhcc-CCC-cccccccccccccHHHHHHHHHHHcCCC
Confidence 9999999999999999999999 888 99843 46899999999999999985
No 11
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=77.35 E-value=9.6 Score=24.19 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=39.0
Q ss_pred HHHHHHHHh----hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHH-hcCcc
Q 038162 13 NDVKQMFLE----AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLR-QHGYE 87 (127)
Q Consensus 13 eeVk~~l~~----~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLR-qhGy~ 87 (127)
++++.+|.. .+..+..=++...+.++|++ ++|+++++..+ ..++.+..+..+... ++.-.-.+ +.|+.
T Consensus 10 ~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~---D~d~dG~i~~~EF~~-~~~~~~~~~~~g~~ 82 (95)
T 1c07_A 10 AKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLP---STLLAHIWSLC---DTKDCGKLSKDQFAL-AFHLISQKLIKGID 82 (95)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCC---HHHHHHHHHHH---CTTCSSSEETTTHHH-HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCC---HHHHHHHHHHH---CCCCCCcCCHHHHHH-HHHHHHHHHHcCCC
Confidence 445555542 23345556778888999976 56777765554 222101112134433 33333334 89998
Q ss_pred eehh
Q 038162 88 ISQD 91 (127)
Q Consensus 88 VS~D 91 (127)
++..
T Consensus 83 lP~~ 86 (95)
T 1c07_A 83 PPHV 86 (95)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 8764
No 12
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=76.28 E-value=1.4 Score=27.41 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhhcHhhhHHHHHHHHHh
Q 038162 6 SRAEKLKNDVKQMFLEAADLLAKLELIDRICKL 38 (127)
Q Consensus 6 ~~~~~LkeeVk~~l~~~~~~~~~L~lID~lqRL 38 (127)
+++.-|.++||.-|..+.+.++++.++.+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~TensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKITENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 344557788888787778999999999888864
No 13
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=66.74 E-value=20 Score=23.07 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=45.5
Q ss_pred HHHHHHHHh----hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHhcCcce
Q 038162 13 NDVKQMFLE----AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEI 88 (127)
Q Consensus 13 eeVk~~l~~----~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~V 88 (127)
++.+..|.. .+..+..=++...+.++|++ ++|+++++..+ ..++.+..+ .+=+..++.-.-+.|+|+.+
T Consensus 11 ~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~---~~~l~~i~~~~---D~d~dG~i~-~~EF~~~~~~~~~~~~g~~~ 83 (99)
T 1qjt_A 11 PVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLP---DLILGKIWDLA---DTDGKGVLS-KQEFFVALRLVACAQNGLEV 83 (99)
T ss_dssp THHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSC---HHHHHHHHHHH---CCSSSSSCC-SHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCC---HHHHHHHHHHH---CCCCCCcCC-HHHHHHHHHHHHHHHcCCCC
Confidence 345555542 22345556677788899986 66777765554 222101112 23345677777889999999
Q ss_pred ehhhhh
Q 038162 89 SQDVFL 94 (127)
Q Consensus 89 S~DvF~ 94 (127)
+++.+.
T Consensus 84 ~~~~l~ 89 (99)
T 1qjt_A 84 SLSSLS 89 (99)
T ss_dssp SGGGCS
T ss_pred Chhhcc
Confidence 987654
No 14
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=52.69 E-value=18 Score=22.69 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=39.5
Q ss_pred HHHHHHHHHh----hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHhcCcc
Q 038162 12 KNDVKQMFLE----AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYE 87 (127)
Q Consensus 12 keeVk~~l~~----~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~ 87 (127)
+++++.+|.. .+..+..=++...++++|++ ++|+.+++..+ ..++.+..+..+. ..++.-.-.+|.|++
T Consensus 8 ~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~---D~d~dG~i~~~EF-~~~~~~~~~~~~g~~ 80 (92)
T 1fi6_A 8 RQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLP---ILELSHIWELS---DFDKDGALTLDEF-CAAFHLVVARKNGYD 80 (92)
T ss_dssp HHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSC---HHHHHHHHHHH---CTTCSSEEEHHHH-HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC---HHHHHHHHHHH---CCCCCCCCCHHHH-HHHHHHHHHHHcCCC
Confidence 3456666643 23345566777888999976 56776665544 2220011111122 233433345688999
Q ss_pred eehh
Q 038162 88 ISQD 91 (127)
Q Consensus 88 VS~D 91 (127)
+++.
T Consensus 81 lp~~ 84 (92)
T 1fi6_A 81 LPEK 84 (92)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8864
No 15
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=49.62 E-value=7.7 Score=24.04 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=20.1
Q ss_pred HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhcc
Q 038162 81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQL 124 (127)
Q Consensus 81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L 124 (127)
-|.+||.||.- | .. ...+++-|+|+++
T Consensus 22 Ar~nG~~VsdR---------G-RI-------p~~V~eAY~aA~~ 48 (55)
T 2kng_A 22 ARRNGHNVSTR---------G-RI-------PADVIDAYHAATL 48 (55)
T ss_dssp HHHTTCCCCSS---------S-CC-------CHHHHHHHHHHHH
T ss_pred HHHcCCcCCCC---------C-CC-------CHHHHHHHHHcCC
Confidence 47799999853 6 54 4677788888875
No 16
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=44.05 E-value=49 Score=21.69 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=41.6
Q ss_pred HHHHHHHHHh---hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHhcCcce
Q 038162 12 KNDVKQMFLE---AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEI 88 (127)
Q Consensus 12 keeVk~~l~~---~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~V 88 (127)
+++.+.+|.. .+..+..=++...+.++|++ ++|+.+++..+ ..++.+..+ .+=+..++.-.-.++.|+.+
T Consensus 14 ~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~---~~el~~i~~~~---D~d~dG~id-~~EF~~~m~~~~~~~~g~~l 86 (106)
T 1eh2_A 14 KAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLP---VDILGRVWELS---DIDHDGMLD-RDEFAVAMFLVYCALEKEPV 86 (106)
T ss_dssp HHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCC---HHHHHHHHHHH---CSSCSSBCC-HHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCC---HHHHHHHHHHH---cCCCCCcCc-HHHHHHHHHHHHHHHcCCCC
Confidence 3455566642 23345566788889999987 56666665544 222001111 12234556556667789988
Q ss_pred ehh
Q 038162 89 SQD 91 (127)
Q Consensus 89 S~D 91 (127)
++.
T Consensus 87 P~~ 89 (106)
T 1eh2_A 87 PMS 89 (106)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 17
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=36.08 E-value=46 Score=20.41 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=22.9
Q ss_pred cHhhhHHHHHHHHHhCcchhhHHHHHHHHHH
Q 038162 24 DLLAKLELIDRICKLGLSYLFEEKIREVLVD 54 (127)
Q Consensus 24 ~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~ 54 (127)
-..+.+.||...+++|++ -+||.+.|..
T Consensus 11 ~d~ewl~LI~~Ak~lGls---leEIrefL~l 38 (57)
T 1b0n_B 11 LDQEWVELMVEAKEANIS---PEEIRKYLLL 38 (57)
T ss_dssp CCHHHHHHHHHHHHTTCC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---HHHHHHHHHH
Confidence 356789999999999998 5788887743
No 18
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=32.30 E-value=79 Score=22.12 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=43.1
Q ss_pred HHHHHHHHHh---hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCC-CChHHHHHHHHHHHhcCcc
Q 038162 12 KNDVKQMFLE---AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQV-KDLYATALCFKLLRQHGYE 87 (127)
Q Consensus 12 keeVk~~l~~---~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~-~dL~~~AL~FRLLRqhGy~ 87 (127)
+++.+.+|.. .+..+..=++...+.++|++ ++|+.+++..+ ..+ .+... .+=+..+|.-.-+++.|+.
T Consensus 50 ~~~l~~~F~~fDd~dG~Is~~El~~~l~~~gl~---~~el~~I~~~~---D~d--~dG~Ld~~EF~~am~li~~~~~G~~ 121 (139)
T 2jq6_A 50 KPTYDEIFYTLSPVNGKITGANAKKEMVKSKLP---NTVLGKIWKLA---DVD--KDGLLDDEEFALANHLIKVKLEGHE 121 (139)
T ss_dssp HHHHHHHHHHSCCSSSEEEHHHHHHHHHHTTCC---HHHHHHHHHHH---CSS--CCSEEEHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCCCCCeECHHHHHHHHHHhCcC---HHHHHHHHHHh---CCC--CCCcCcHHHHHHHHHHHHHHHcCCC
Confidence 4556666653 22345566788889999987 55666665544 122 11111 1223456666667889999
Q ss_pred eehhhh
Q 038162 88 ISQDVF 93 (127)
Q Consensus 88 VS~DvF 93 (127)
+++..-
T Consensus 122 lP~~LP 127 (139)
T 2jq6_A 122 LPADLP 127 (139)
T ss_dssp CCSCCC
T ss_pred CCcccC
Confidence 987643
No 19
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=32.06 E-value=57 Score=20.62 Aligned_cols=27 Identities=41% Similarity=0.548 Sum_probs=20.9
Q ss_pred HhhhHHHHHHHHHhCcchhhHHHHHHHHHH
Q 038162 25 LLAKLELIDRICKLGLSYLFEEKIREVLVD 54 (127)
Q Consensus 25 ~~~~L~lID~lqRLGi~yhFe~EI~~~L~~ 54 (127)
.+.+|.+|-.++.+|++= +||++.|+.
T Consensus 2 dl~rL~~I~~lr~lGfsL---~eIk~~l~~ 28 (99)
T 1q08_A 2 DLQRLKFIRHARQLGFSL---ESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCH---HHHHHHHHH
Confidence 356788999999999884 677777753
No 20
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.39 E-value=1e+02 Score=20.94 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHH
Q 038162 11 LKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTV 56 (127)
Q Consensus 11 LkeeVk~~l~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~ 56 (127)
+++.|=.+|. -.|+.+-+++..|++=||+--=.+.|..+|++|-
T Consensus 14 lReRvIHLLA--LkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa 57 (100)
T 2e5n_A 14 YRDRVIHLLA--LKAYKKPELLARLQKDGVNQKDKNSLGAILQQVA 57 (100)
T ss_dssp HHHHHHHHHH--HSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHH--cCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 5666767664 4667778999999999999998889999999995
No 21
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=28.70 E-value=82 Score=21.60 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHH
Q 038162 11 LKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTV 56 (127)
Q Consensus 11 LkeeVk~~l~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~ 56 (127)
+++.|=.+|. -.|+.+-+++..|++=||+--=.+.|..+|++|-
T Consensus 13 lReRvIHLLA--Lkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA 56 (104)
T 2doa_A 13 FRDRVLHLLA--LRPYRKAELLLRLQKDGLTQADKDALDGLLQQVA 56 (104)
T ss_dssp HHHHHHHHHH--HSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH--cCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5677777774 4567778999999999999998889999999995
No 22
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=27.20 E-value=51 Score=25.73 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHh-------hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccC--CCCCC--CChHHH
Q 038162 6 SRAEKLKNDVKQMFLE-------AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDT--GCLQV--KDLYAT 74 (127)
Q Consensus 6 ~~~~~LkeeVk~~l~~-------~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~--~~~~~--~dL~~~ 74 (127)
+.++.|++++...+.. +.|.-+++.-+|.|+.. ++. =.+++-..||-+++|..-.. .+... .-|...
T Consensus 34 e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~-l~~-~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L 111 (266)
T 2of3_A 34 EHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRL-ADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELC 111 (266)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHH-HHH-CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHH-hhh-ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4555666655544321 24677788888888874 332 34577777777776332100 11111 246667
Q ss_pred HHHHHHHHhcCcceeh
Q 038162 75 ALCFKLLRQHGYEISQ 90 (127)
Q Consensus 75 AL~FRLLRqhGy~VS~ 90 (127)
+..|-.|++.||..+.
T Consensus 112 ~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 112 KVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHhccccchH
Confidence 7778889999999995
No 23
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=26.13 E-value=32 Score=22.66 Aligned_cols=71 Identities=11% Similarity=0.102 Sum_probs=38.7
Q ss_pred HHHHHHHHh----hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCC-CChHHHHHHHHHHHhcCcc
Q 038162 13 NDVKQMFLE----AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQV-KDLYATALCFKLLRQHGYE 87 (127)
Q Consensus 13 eeVk~~l~~----~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~-~dL~~~AL~FRLLRqhGy~ 87 (127)
++++..|.. .+..+..=++...+.++|++ ++|+++++..+ ..+ ++... .+=+..++.-.-.++.|++
T Consensus 22 ~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~---~~el~~i~~~~---D~d--~dG~I~~~EF~~~m~~~~~~~~G~~ 93 (110)
T 1iq3_A 22 EYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLS---IPELSYIWELS---DAD--CDGALTLPEFCAAFHLIVARKNGYP 93 (110)
T ss_dssp HHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCS---SCCHHHHHHHH---CSS--SCSEEEHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCC---HHHHHHHHHHH---cCC--CCCcCcHHHHHHHHHHHHHHHcCCC
Confidence 445555543 22345556677778889976 45666665544 222 11111 1222344444456788999
Q ss_pred eehh
Q 038162 88 ISQD 91 (127)
Q Consensus 88 VS~D 91 (127)
++..
T Consensus 94 lP~~ 97 (110)
T 1iq3_A 94 LPEG 97 (110)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8765
No 24
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.76 E-value=26 Score=21.09 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=5.4
Q ss_pred HHHHhcCc
Q 038162 79 KLLRQHGY 86 (127)
Q Consensus 79 RLLRqhGy 86 (127)
+||||||.
T Consensus 39 ~LLkqHgl 46 (48)
T 3vmx_A 39 KLLKQNGL 46 (48)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 56777774
No 25
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ...
Probab=23.23 E-value=32 Score=27.76 Aligned_cols=44 Identities=25% Similarity=0.203 Sum_probs=25.9
Q ss_pred hCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHhcCcce
Q 038162 38 LGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEI 88 (127)
Q Consensus 38 LGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~V 88 (127)
=|....|.-..+.-|..+| ++.+.-.=|-+|.+|++|++.|++|
T Consensus 141 pG~nN~fli~t~s~LA~lY-------nd~SvLEnhH~a~a~~lL~~~~~ni 184 (349)
T 1y2k_A 141 PGVSNQFLINTNSELALMY-------NDSSVLENHHLAVGFKLLQEENCDI 184 (349)
T ss_dssp CSSCHHHHHHTTCHHHHHH-------TTSSHHHHHHHHHHHHGGGSTTCCT
T ss_pred CCCCcHHHHhcCCHHHHHc-------CCCCHHHHHHHHHHHHHHcccccch
Confidence 4455555444444454454 1112223456899999999999764
No 26
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.89 E-value=94 Score=23.24 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=18.9
Q ss_pred CChHHHHHHHHHHHhcCcceeh
Q 038162 69 KDLYATALCFKLLRQHGYEISQ 90 (127)
Q Consensus 69 ~dL~~~AL~FRLLRqhGy~VS~ 90 (127)
.+|..++=.++.|+..||..++
T Consensus 124 ~~l~~i~~~Y~~Lk~~G~~FP~ 145 (226)
T 3zyq_A 124 PKYKVVQDTYQIMKVEGHVFPE 145 (226)
T ss_dssp GGGHHHHHHHHHHHHHTCCCCC
T ss_pred cchHHHHHHHHHHHhcCCCccc
Confidence 3677888899999999998875
No 27
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A*
Probab=22.82 E-value=41 Score=27.06 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=27.7
Q ss_pred hCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHhcCcce
Q 038162 38 LGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEI 88 (127)
Q Consensus 38 LGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~V 88 (127)
=|+...|.--.+.-|..+| . +.+.-.=|.+|..|+||++.|+++
T Consensus 120 pG~nN~fli~t~s~LA~lY--n-----d~SvLEnhH~a~~~~lL~~~~~ni 163 (329)
T 3dyn_A 120 PGYNNTYQINARTELAVRY--N-----DISPLENHHCAVAFQILAEPECNI 163 (329)
T ss_dssp CSSCHHHHHHHTCHHHHHH--T-----TSSHHHHHHHHHHHHHHTSGGGCT
T ss_pred CCCCCHHHHHhCCHHHHHc--C-----CCcHhHHHHHHHHHHHHhcccchh
Confidence 4555566555555565555 2 112223567899999999988654
No 28
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=22.22 E-value=60 Score=29.38 Aligned_cols=19 Identities=42% Similarity=0.660 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 038162 2 EGYRSRAEKLKNDVKQMFL 20 (127)
Q Consensus 2 ~~~~~~~~~LkeeVk~~l~ 20 (127)
+.+.+++++|+++||+||.
T Consensus 50 ~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 50 SSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhc
Confidence 5678999999999999996
No 29
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.11 E-value=27 Score=21.66 Aligned_cols=9 Identities=78% Similarity=1.051 Sum_probs=5.0
Q ss_pred HHHHhcCcc
Q 038162 79 KLLRQHGYE 87 (127)
Q Consensus 79 RLLRqhGy~ 87 (127)
+||||||.-
T Consensus 46 ~LLkqHgl~ 54 (58)
T 3a2a_A 46 KLLRQHGLL 54 (58)
T ss_dssp HHHHHC---
T ss_pred HHHHHcCCc
Confidence 688888853
No 30
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Probab=21.53 E-value=32 Score=28.21 Aligned_cols=44 Identities=25% Similarity=0.184 Sum_probs=25.5
Q ss_pred hCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHhcCcce
Q 038162 38 LGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEI 88 (127)
Q Consensus 38 LGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~V 88 (127)
=|....|.-....-|..+| ++.+.-.=|.+|++|++|++.|++|
T Consensus 128 pG~nN~fli~t~s~LA~lY-------nd~SvLEnhH~a~a~~lL~~~~~ni 171 (377)
T 1f0j_A 128 PGVSNQFLINTNSELALMY-------NDESVLENHHLAVGFKLLQEEHCDI 171 (377)
T ss_dssp CSSCHHHHHHTTCHHHHHT-------TTSSHHHHHHHHHHHHGGGSTTCCT
T ss_pred CCCCCHHHHhcCCHHHHHc-------CCCCHHHHHHHHHHHHHHcccccch
Confidence 4444444444444444444 1112223456899999999999864
No 31
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2
Probab=20.63 E-value=44 Score=27.23 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHhcCcce
Q 038162 70 DLYATALCFKLLRQHGYEI 88 (127)
Q Consensus 70 dL~~~AL~FRLLRqhGy~V 88 (127)
.=|.+|++|++|++.|+++
T Consensus 152 EnhH~a~a~~iL~~~~~ni 170 (365)
T 1taz_A 152 ENHHISSVFRLMQDDEMNI 170 (365)
T ss_dssp HHHHHHHHHHHTTSGGGCT
T ss_pred HHHHHHHHHHHHhCccccc
Confidence 3567899999999988754
Done!