Query 038163
Match_columns 207
No_of_seqs 114 out of 1897
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:14:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.4E-21 3E-26 176.9 10.7 153 36-205 155-312 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.8E-21 3.9E-26 176.1 10.6 185 1-205 147-336 (968)
3 KOG0617 Ras suppressor protein 99.7 1.5E-19 3.2E-24 128.5 -3.0 155 1-199 40-194 (264)
4 KOG4194 Membrane glycoprotein 99.7 2.3E-18 5.1E-23 142.0 2.4 186 1-206 156-346 (873)
5 KOG4194 Membrane glycoprotein 99.7 2E-18 4.4E-23 142.3 -0.3 187 1-207 204-422 (873)
6 KOG0444 Cytoskeletal regulator 99.6 2.6E-17 5.7E-22 137.2 -1.6 180 3-206 87-296 (1255)
7 KOG0444 Cytoskeletal regulator 99.6 1.2E-17 2.6E-22 139.2 -4.5 182 1-206 133-321 (1255)
8 KOG4237 Extracellular matrix p 99.6 6.5E-17 1.4E-21 127.9 -2.0 193 1-206 74-351 (498)
9 KOG0617 Ras suppressor protein 99.5 3.7E-16 8.1E-21 111.3 -5.1 149 15-206 29-178 (264)
10 KOG0472 Leucine-rich repeat pr 99.4 6.9E-16 1.5E-20 122.6 -8.3 176 2-205 99-301 (565)
11 cd00116 LRR_RI Leucine-rich re 99.3 1E-12 2.2E-17 105.0 5.4 71 118-192 217-293 (319)
12 KOG0618 Serine/threonine phosp 99.3 3.9E-14 8.4E-19 122.4 -3.6 180 1-207 248-458 (1081)
13 PLN03210 Resistant to P. syrin 99.3 1.1E-11 2.4E-16 114.3 11.1 75 17-98 609-683 (1153)
14 cd00116 LRR_RI Leucine-rich re 99.3 1.1E-12 2.3E-17 104.9 3.9 178 14-206 76-283 (319)
15 KOG0472 Leucine-rich repeat pr 99.3 5.5E-14 1.2E-18 111.9 -3.5 161 3-191 146-311 (565)
16 PF14580 LRR_9: Leucine-rich r 99.3 4.5E-12 9.8E-17 92.3 5.5 124 45-207 19-146 (175)
17 PLN03210 Resistant to P. syrin 99.3 4.8E-11 1E-15 110.1 12.4 176 15-206 653-874 (1153)
18 PRK15387 E3 ubiquitin-protein 99.2 2.9E-11 6.3E-16 105.9 6.8 112 73-198 343-466 (788)
19 PRK15387 E3 ubiquitin-protein 99.2 3.7E-11 8E-16 105.3 6.5 49 150-207 403-451 (788)
20 KOG4237 Extracellular matrix p 99.2 4E-12 8.8E-17 101.1 0.4 74 20-98 68-142 (498)
21 KOG0532 Leucine-rich repeat (L 99.2 7.6E-13 1.6E-17 109.4 -4.2 166 1-196 82-252 (722)
22 PRK15370 E3 ubiquitin-protein 99.2 6.2E-11 1.4E-15 104.0 7.1 62 122-197 325-386 (754)
23 PRK15370 E3 ubiquitin-protein 99.1 1.7E-10 3.6E-15 101.4 7.7 61 122-196 346-406 (754)
24 PF14580 LRR_9: Leucine-rich r 99.1 4E-11 8.6E-16 87.4 1.6 129 16-184 16-147 (175)
25 KOG0618 Serine/threonine phosp 99.0 2.8E-12 6.2E-17 111.1 -6.0 183 3-207 273-482 (1081)
26 PLN03150 hypothetical protein; 99.0 1.3E-09 2.7E-14 94.8 7.9 60 21-85 420-479 (623)
27 PLN03150 hypothetical protein; 99.0 8.1E-10 1.8E-14 96.0 6.2 88 1-94 425-512 (623)
28 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.5E-15 90.2 0.4 125 18-162 283-412 (490)
29 KOG0532 Leucine-rich repeat (L 98.9 2.1E-11 4.5E-16 101.1 -5.3 164 16-206 72-239 (722)
30 PF13855 LRR_8: Leucine rich r 98.9 2.2E-09 4.7E-14 64.7 3.9 60 19-84 1-61 (61)
31 COG4886 Leucine-rich repeat (L 98.9 1.3E-09 2.8E-14 89.9 3.7 167 2-196 124-296 (394)
32 KOG3207 Beta-tubulin folding c 98.8 2.5E-09 5.4E-14 86.4 2.6 162 15-191 142-315 (505)
33 KOG3207 Beta-tubulin folding c 98.8 1.7E-09 3.6E-14 87.3 1.2 140 16-190 118-259 (505)
34 KOG1909 Ran GTPase-activating 98.7 6.3E-09 1.4E-13 81.8 2.0 170 15-192 88-285 (382)
35 PF13855 LRR_8: Leucine rich r 98.6 1.4E-08 3E-13 61.2 1.9 61 122-189 1-61 (61)
36 COG4886 Leucine-rich repeat (L 98.6 2.9E-08 6.2E-13 81.9 3.4 139 1-162 147-290 (394)
37 KOG1259 Nischarin, modulator o 98.5 1.9E-08 4E-13 78.2 0.0 118 46-205 285-403 (490)
38 KOG2120 SCF ubiquitin ligase, 98.5 9E-09 2E-13 79.7 -2.2 158 16-190 207-376 (419)
39 KOG1909 Ran GTPase-activating 98.5 1.2E-07 2.7E-12 74.7 3.6 37 16-54 27-67 (382)
40 KOG1859 Leucine-rich repeat pr 98.3 1E-08 2.2E-13 87.8 -5.7 58 20-85 165-222 (1096)
41 KOG4658 Apoptotic ATPase [Sign 98.3 2E-07 4.4E-12 83.5 2.0 71 9-85 561-631 (889)
42 KOG0531 Protein phosphatase 1, 98.3 3.3E-07 7.1E-12 76.2 2.2 63 15-85 91-153 (414)
43 PF12799 LRR_4: Leucine Rich r 98.3 2E-06 4.4E-11 48.0 4.5 39 19-60 1-39 (44)
44 KOG2982 Uncharacterized conser 98.2 8.9E-07 1.9E-11 68.9 3.1 181 17-207 69-285 (418)
45 KOG2120 SCF ubiquitin ligase, 98.2 2.8E-07 6E-12 71.7 -0.2 171 20-207 186-369 (419)
46 KOG2982 Uncharacterized conser 98.2 7.3E-07 1.6E-11 69.3 1.4 162 13-184 91-286 (418)
47 KOG4658 Apoptotic ATPase [Sign 98.1 3.6E-06 7.7E-11 75.7 3.9 124 17-156 543-675 (889)
48 KOG3665 ZYG-1-like serine/thre 98.1 3.5E-06 7.6E-11 74.0 3.8 64 19-85 122-186 (699)
49 KOG0531 Protein phosphatase 1, 98.0 7.9E-07 1.7E-11 74.0 -1.1 149 17-190 70-221 (414)
50 KOG4579 Leucine-rich repeat (L 97.9 1E-06 2.3E-11 61.1 -1.2 111 19-170 27-140 (177)
51 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 4E-10 44.1 4.1 38 149-191 1-38 (44)
52 COG5238 RNA1 Ran GTPase-activa 97.9 1.8E-05 3.9E-10 61.1 4.3 16 16-31 27-42 (388)
53 KOG1859 Leucine-rich repeat pr 97.7 8.2E-06 1.8E-10 70.5 0.0 79 117-207 182-260 (1096)
54 KOG4579 Leucine-rich repeat (L 97.7 4.5E-06 9.7E-11 58.0 -1.7 59 122-189 77-135 (177)
55 KOG3665 ZYG-1-like serine/thre 97.5 8.3E-05 1.8E-09 65.5 3.5 130 16-156 145-282 (699)
56 KOG1644 U2-associated snRNP A' 97.5 0.00024 5.2E-09 52.6 5.3 129 21-189 21-152 (233)
57 COG5238 RNA1 Ran GTPase-activa 97.5 0.00012 2.7E-09 56.6 3.8 169 15-191 88-286 (388)
58 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.2E-09 55.5 2.3 85 117-207 60-149 (260)
59 PF13306 LRR_5: Leucine rich r 97.3 0.0017 3.7E-08 44.6 7.5 66 9-81 2-67 (129)
60 KOG2123 Uncharacterized conser 97.1 4.2E-05 9.2E-10 59.2 -2.8 82 118-207 37-123 (388)
61 KOG1644 U2-associated snRNP A' 97.0 0.001 2.2E-08 49.4 4.0 60 19-85 42-101 (233)
62 PRK15386 type III secretion pr 96.9 0.0022 4.7E-08 53.0 5.9 69 16-95 49-117 (426)
63 PF13306 LRR_5: Leucine rich r 96.9 0.0044 9.6E-08 42.5 6.3 123 40-204 7-129 (129)
64 KOG2739 Leucine-rich acidic nu 96.8 0.00097 2.1E-08 51.1 2.4 66 16-85 62-129 (260)
65 KOG2123 Uncharacterized conser 96.4 0.00036 7.8E-09 54.2 -2.1 101 18-155 18-123 (388)
66 PF00560 LRR_1: Leucine Rich R 96.0 0.0034 7.3E-08 29.2 1.0 21 178-199 1-21 (22)
67 PF00560 LRR_1: Leucine Rich R 95.6 0.0084 1.8E-07 27.8 1.5 18 21-41 2-19 (22)
68 KOG1947 Leucine rich repeat pr 95.4 0.017 3.7E-07 48.6 3.6 35 44-81 187-223 (482)
69 KOG1947 Leucine rich repeat pr 95.2 0.013 2.9E-07 49.2 2.6 65 120-189 241-307 (482)
70 KOG3864 Uncharacterized conser 94.5 0.014 3E-07 43.4 0.7 79 122-206 101-181 (221)
71 PRK15386 type III secretion pr 94.4 0.18 3.8E-06 42.0 7.0 124 2-160 60-188 (426)
72 PF13516 LRR_6: Leucine Rich r 93.6 0.038 8.2E-07 26.0 1.1 21 72-92 2-22 (24)
73 KOG3864 Uncharacterized conser 93.0 0.062 1.3E-06 40.0 1.7 68 19-90 101-170 (221)
74 PF13504 LRR_7: Leucine rich r 92.9 0.088 1.9E-06 22.7 1.5 12 20-31 2-13 (17)
75 KOG4341 F-box protein containi 92.7 0.16 3.4E-06 42.0 3.8 158 17-189 266-438 (483)
76 KOG4341 F-box protein containi 92.4 0.064 1.4E-06 44.2 1.3 181 15-206 238-431 (483)
77 smart00370 LRR Leucine-rich re 88.9 0.45 9.9E-06 22.6 2.1 13 19-31 2-14 (26)
78 smart00369 LRR_TYP Leucine-ric 88.9 0.45 9.9E-06 22.6 2.1 13 19-31 2-14 (26)
79 smart00368 LRR_RI Leucine rich 88.7 0.63 1.4E-05 22.8 2.5 21 72-92 2-22 (28)
80 KOG4308 LRR-containing protein 86.4 0.016 3.5E-07 49.2 -6.7 17 174-190 287-303 (478)
81 KOG0473 Leucine-rich repeat pr 83.4 0.026 5.6E-07 43.1 -6.0 84 40-137 37-124 (326)
82 smart00367 LRR_CC Leucine-rich 82.5 1.8 3.8E-05 20.6 2.3 20 72-91 2-22 (26)
83 smart00365 LRR_SD22 Leucine-ri 79.9 1.6 3.6E-05 21.0 1.6 13 19-31 2-14 (26)
84 KOG4308 LRR-containing protein 76.6 0.17 3.8E-06 43.0 -4.0 70 14-85 110-185 (478)
85 KOG3763 mRNA export factor TAP 76.6 2.1 4.5E-05 36.9 2.4 67 120-194 216-287 (585)
86 KOG3763 mRNA export factor TAP 69.5 3.5 7.5E-05 35.6 2.1 66 16-86 215-284 (585)
87 smart00364 LRR_BAC Leucine-ric 64.9 4.6 9.9E-05 19.5 1.2 13 150-162 3-15 (26)
88 KOG0473 Leucine-rich repeat pr 64.9 0.2 4.3E-06 38.5 -5.4 60 21-87 67-126 (326)
89 TIGR00864 PCC polycystin catio 46.6 13 0.00029 38.4 2.0 31 1-32 2-32 (2740)
90 TIGR00864 PCC polycystin catio 24.5 59 0.0013 34.1 2.4 32 25-58 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.4e-21 Score=176.87 Aligned_cols=153 Identities=26% Similarity=0.337 Sum_probs=77.7
Q ss_pred cchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccc
Q 038163 36 KLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVN 110 (207)
Q Consensus 36 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~ 110 (207)
.+|..++.+++|++|++++|.+.+..| ..+.++++|++|++++|.+.+..+..++.+++| .+|.+.+..|.
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~- 230 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIP---NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY- 230 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCC---hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-
Confidence 445555555556666665555555555 455555555555555555554444444444433 44444444444
Q ss_pred cccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCC
Q 038163 111 GVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLR 190 (207)
Q Consensus 111 ~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~ 190 (207)
.+..+++|++|+++ +|.+++..|..+. .+++|+.|++++|.+. +.+ |. .+..+++|+.|++++|.+.
T Consensus 231 ------~l~~l~~L~~L~L~--~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~--~~~-p~-~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 231 ------EIGGLTSLNHLDLV--YNNLTGPIPSSLG-NLKNLQYLFLYQNKLS--GPI-PP-SIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ------hHhcCCCCCEEECc--CceeccccChhHh-CCCCCCEEECcCCeee--ccC-ch-hHhhccCcCEEECcCCeec
Confidence 44455555555555 5555444444444 4555555555555544 344 43 4444445555555555444
Q ss_pred CCccccccCCCCCcc
Q 038163 191 GSLPWCMANMTSLRI 205 (207)
Q Consensus 191 ~~~p~~~~~l~~L~~ 205 (207)
+.+|..+..+++|+.
T Consensus 298 ~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 298 GEIPELVIQLQNLEI 312 (968)
T ss_pred cCCChhHcCCCCCcE
Confidence 444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.8e-21 Score=176.13 Aligned_cols=185 Identities=23% Similarity=0.269 Sum_probs=116.5
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+.+|. .+..+++|++|++++|.+ ...+|..+.++++|++|++++|.+.+..| ..+.++++|++|+++
T Consensus 147 Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l--~~~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 147 LSNNMLSGEIPN-DIGSFSSLKVLDLGGNVL--VGKIPNSLTNLTSLEFLTLASNQLVGQIP---RELGQMKSLKWIYLG 220 (968)
T ss_pred CcCCcccccCCh-HHhcCCCCCEEECccCcc--cccCChhhhhCcCCCeeeccCCCCcCcCC---hHHcCcCCccEEECc
Confidence 356666666664 367788888888888887 56777777888888888888887777777 677777777777777
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.+.+..+..+..+++| .+|.+.+..|. .+..+++|+.|+++ +|.+.+..|..+. .+++|+.|+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~L~--~n~l~~~~p~~l~-~l~~L~~L~ 290 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-------SLGNLKNLQYLFLY--QNKLSGPIPPSIF-SLQKLISLD 290 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccCh-------hHhCCCCCCEEECc--CCeeeccCchhHh-hccCcCEEE
Confidence 777766666655555554 56666665555 55555666666666 5555555555555 555555555
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCcc
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 205 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 205 (207)
+++|.+. +.+ |. .+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 291 Ls~n~l~--~~~-p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 291 LSDNSLS--GEI-PE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred CcCCeec--cCC-Ch-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 5555554 444 44 4444555555555555554444444444444443
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=1.5e-19 Score=128.52 Aligned_cols=155 Identities=26% Similarity=0.332 Sum_probs=127.0
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
||+|+++ .+||. ++.+.+|+.|++++|+| ..+|..++.+++|+.|+++-|.+. ..| ..++.++.|+.||+.
T Consensus 40 LSHNKl~-~vppn-ia~l~nlevln~~nnqi---e~lp~~issl~klr~lnvgmnrl~-~lp---rgfgs~p~levldlt 110 (264)
T KOG0617|consen 40 LSHNKLT-VVPPN-IAELKNLEVLNLSNNQI---EELPTSISSLPKLRILNVGMNRLN-ILP---RGFGSFPALEVLDLT 110 (264)
T ss_pred cccCcee-ecCCc-HHHhhhhhhhhcccchh---hhcChhhhhchhhhheecchhhhh-cCc---cccCCCchhhhhhcc
Confidence 6889998 57777 59999999999999999 788999999999999999988877 467 788999999999999
Q ss_pred CCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCc
Q 038163 81 DSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYT 160 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~ 160 (207)
+|.+... .+|. .|..+..|+.|-++ .|.|. .+|..++ .+++|+.|.+..|.
T Consensus 111 ynnl~e~------------------~lpg-------nff~m~tlralyl~--dndfe-~lp~dvg-~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 111 YNNLNEN------------------SLPG-------NFFYMTTLRALYLG--DNDFE-ILPPDVG-KLTNLQILSLRDND 161 (264)
T ss_pred ccccccc------------------cCCc-------chhHHHHHHHHHhc--CCCcc-cCChhhh-hhcceeEEeeccCc
Confidence 9987622 3555 66677888888888 88886 6777777 88888888888888
Q ss_pred cCcccccchhhhhcCCCCCceEEecCCcCCCCccccccC
Q 038163 161 LGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMAN 199 (207)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 199 (207)
+. ++ |. .++.++.|++|.+.+|+++ .+|.+++.
T Consensus 162 ll---~l-pk-eig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 162 LL---SL-PK-EIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred hh---hC-cH-HHHHHHHHHHHhcccceee-ecChhhhh
Confidence 87 77 77 8888888888888888887 45555544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=2.3e-18 Score=141.96 Aligned_cols=186 Identities=21% Similarity=0.216 Sum_probs=122.9
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
||.|.|+ .+|...|..-.++++|+|++|.| +..--..|..+.+|.+|.|+.|+++...+ ..+.++++|+.|+|.
T Consensus 156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~I--t~l~~~~F~~lnsL~tlkLsrNrittLp~---r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRI--TTLETGHFDSLNSLLTLKLSRNRITTLPQ---RSFKRLPKLESLDLN 229 (873)
T ss_pred hhhchhh-cccCCCCCCCCCceEEeeccccc--cccccccccccchheeeecccCcccccCH---HHhhhcchhhhhhcc
Confidence 4567776 57766677777888888888888 55556678888888888888888887555 677778899999999
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
.|++...---.+..+++| ..|.+...--. .|..+.++++|+|+ .|.+...-..++. .+++|+.|+
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG-------~Fy~l~kme~l~L~--~N~l~~vn~g~lf-gLt~L~~L~ 299 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG-------AFYGLEKMEHLNLE--TNRLQAVNEGWLF-GLTSLEQLD 299 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCc-------ceeeecccceeecc--cchhhhhhccccc-ccchhhhhc
Confidence 888763322233344433 66666543222 56666667777777 6666544445555 666677777
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
++.|.+. .|++. .+..+++|++|+++.|++++..+..|..+..|+.|
T Consensus 300 lS~NaI~---rih~d-~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 300 LSYNAIQ---RIHID-SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred cchhhhh---eeecc-hhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 7777666 55233 56666667777777777665555555555555543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=2e-18 Score=142.34 Aligned_cols=187 Identities=20% Similarity=0.214 Sum_probs=113.2
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|+.|.++ .+|+.+|.++++|+.|+|..|.| ...-.-.|.+++.|+.|.+..|.++...- ..+..+.++++|+|.
T Consensus 204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i--rive~ltFqgL~Sl~nlklqrN~I~kL~D---G~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRI--RIVEGLTFQGLPSLQNLKLQRNDISKLDD---GAFYGLEKMEHLNLE 277 (873)
T ss_pred cccCccc-ccCHHHhhhcchhhhhhccccce--eeehhhhhcCchhhhhhhhhhcCcccccC---cceeeecccceeecc
Confidence 3556666 46777777777777777777777 22223456666677777777776665444 456667778888888
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
.|+++..-..++-++++| ++|.+...-+. .+..+++|+.|+|+ +|.++...+..+. .+..|+.|+
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-------~WsftqkL~~LdLs--~N~i~~l~~~sf~-~L~~Le~Ln 347 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-------SWSFTQKLKELDLS--SNRITRLDEGSFR-VLSQLEELN 347 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhheeecc-------hhhhcccceeEecc--ccccccCChhHHH-HHHHhhhhc
Confidence 887764333344444444 77777665555 77788888888888 8887754444444 455555555
Q ss_pred ccCCccCcccccchhhh---------------------------hcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 156 LSYYTLGINSSETLNQG---------------------------LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~---------------------------~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
+++|.+. .+ .... +.++++|+.|++.+|++....-..|..+++|++||
T Consensus 348 Ls~Nsi~---~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 348 LSHNSID---HL-AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred ccccchH---HH-HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 5555554 33 2223 44455555555555555532225555556655554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.62 E-value=2.6e-17 Score=137.15 Aligned_cols=180 Identities=21% Similarity=0.228 Sum_probs=106.4
Q ss_pred CCccCce-ecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 3 FNEINNL-VVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 3 ~n~~~~~-~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
+|++..+ ||++ +..+..|++||||.|++ .++|..+....++..|+|++|+|..+.. +-+.++..|-+||||+
T Consensus 87 ~N~LKnsGiP~d-iF~l~dLt~lDLShNqL---~EvP~~LE~AKn~iVLNLS~N~IetIPn---~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 87 DNNLKNSGIPTD-IFRLKDLTILDLSHNQL---REVPTNLEYAKNSIVLNLSYNNIETIPN---SLFINLTDLLFLDLSN 159 (1255)
T ss_pred ccccccCCCCch-hcccccceeeecchhhh---hhcchhhhhhcCcEEEEcccCccccCCc---hHHHhhHhHhhhcccc
Confidence 3444332 6666 47788888888888888 6778877777788888888887765422 2333444455555555
Q ss_pred CCC-----------------------ChHHHHhhcccccc-----cC-CcccceeccccccccCCCCCCCccceeccccc
Q 038163 82 SPL-----------------------HISLLQSIASIFPL-----LK-NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFM 132 (207)
Q Consensus 82 ~~~-----------------------~~~~~~~l~~l~~L-----~~-n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 132 (207)
|++ ..-....+..+++| ++ +.-...+|. .+..+.+|+.+|++
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-------sld~l~NL~dvDlS-- 230 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-------SLDDLHNLRDVDLS-- 230 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-------chhhhhhhhhcccc--
Confidence 543 32222222233333 11 111123455 55566667777777
Q ss_pred ccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 133 RIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 133 ~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
.|.+. .+|+.+. .+++|+.|++++|.++ ++ .. ....+.+|++|++++|+++ .+|+++.++++|+.|
T Consensus 231 ~N~Lp-~vPecly-~l~~LrrLNLS~N~it---eL-~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 231 ENNLP-IVPECLY-KLRNLRRLNLSGNKIT---EL-NM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL 296 (1255)
T ss_pred ccCCC-cchHHHh-hhhhhheeccCcCcee---ee-ec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence 76665 5566666 6677777777777766 54 33 4555666666666666665 456666666655544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.61 E-value=1.2e-17 Score=139.17 Aligned_cols=182 Identities=22% Similarity=0.297 Sum_probs=139.5
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
||+|+|. .||...|.++..|-.||||+|++ ..+|+.+..+.+|++|+|++|.+....- ..+..+++|++|.++
T Consensus 133 LS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL---e~LPPQ~RRL~~LqtL~Ls~NPL~hfQL---rQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 133 LSYNNIE-TIPNSLFINLTDLLFLDLSNNRL---EMLPPQIRRLSMLQTLKLSNNPLNHFQL---RQLPSMTSLSVLHMS 205 (1255)
T ss_pred cccCccc-cCCchHHHhhHhHhhhccccchh---hhcCHHHHHHhhhhhhhcCCChhhHHHH---hcCccchhhhhhhcc
Confidence 5788888 68999999999999999999999 7788888899999999999998775443 556677788888888
Q ss_pred CCCCC-hHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEE
Q 038163 81 DSPLH-ISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL 154 (207)
Q Consensus 81 ~~~~~-~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L 154 (207)
+.+.+ ...|.++..+.+| +.|.+.. .|. .+..+++|+.|+++ +|.++. +-.... .|.+|..|
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPe-------cly~l~~LrrLNLS--~N~ite-L~~~~~-~W~~lEtL 273 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPE-------CLYKLRNLRRLNLS--GNKITE-LNMTEG-EWENLETL 273 (1255)
T ss_pred cccchhhcCCCchhhhhhhhhccccccCCCc-chH-------HHhhhhhhheeccC--cCceee-eeccHH-HHhhhhhh
Confidence 87654 3455566666655 5566543 566 77888899999999 888873 333344 67788888
Q ss_pred EccCCccCcccccchhhhhcCCCCCceEEecCCcCCC-CccccccCCCCCccC
Q 038163 155 SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG-SLPWCMANMTSLRIL 206 (207)
Q Consensus 155 ~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l 206 (207)
++++|.++ .+ |. .+++++.|+.|.+.+|++.- -+|+.++++.+|+++
T Consensus 274 NlSrNQLt---~L-P~-avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 274 NLSRNQLT---VL-PD-AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred ccccchhc---cc-hH-HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 88888887 77 77 88888888888888888773 367777777766653
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=6.5e-17 Score=127.89 Aligned_cols=193 Identities=19% Similarity=0.214 Sum_probs=136.8
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCC-CcCCcccccchhcccCCCCccEEEc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSS-NNFTETVTITTQELHNFTNMEYLKL 79 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~l~~L~~L~l 79 (207)
|+.|.|+ .||+.+|..+++|+.||||.|.| ...-|..|.++..+..|-+.+ |.|++... ..+..+..+|.|.+
T Consensus 74 LdqN~I~-~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k---~~F~gL~slqrLll 147 (498)
T KOG4237|consen 74 LDQNQIS-SIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDLPK---GAFGGLSSLQRLLL 147 (498)
T ss_pred eccCCcc-cCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhhhh---hHhhhHHHHHHHhc
Confidence 4668888 79999999999999999999999 566788899998887776655 88887544 45555566666666
Q ss_pred CCCCCChHHHHhhcccccc-----cCCcccce----e--------------------------------c--ccc-----
Q 038163 80 DDSPLHISLLQSIASIFPL-----LKNLSMIG----C--------------------------------E--VNG----- 111 (207)
Q Consensus 80 ~~~~~~~~~~~~l~~l~~L-----~~n~~~~~----~--------------------------------~--~~~----- 111 (207)
..|.+.......+..++++ .+|.+... + | ..+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 5555443222222222221 11111000 0 0 000
Q ss_pred --------------------------------ccc----cCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 112 --------------------------------VIR----GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 112 --------------------------------~~~----~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+.+ -+.|.++++|++|+++ +|++++.-..++. ....+++|.
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls--nN~i~~i~~~aFe-~~a~l~eL~ 304 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS--NNKITRIEDGAFE-GAAELQELY 304 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC--CCccchhhhhhhc-chhhhhhhh
Confidence 000 0146789999999999 9999977777777 889999999
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
+..|.+. .+ ....|.++..|++|++.+|+++...|..|..+.+|..|
T Consensus 305 L~~N~l~---~v-~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 305 LTRNKLE---FV-SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred cCcchHH---HH-HHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence 9999997 66 55589999999999999999998888889888877765
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=3.7e-16 Score=111.29 Aligned_cols=149 Identities=26% Similarity=0.283 Sum_probs=126.9
Q ss_pred ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163 15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS 94 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 94 (207)
+..+.+++.|.+|.|++ ..+|..+..+.+|+.|++.+|.+... | .+++.+++|+.|.++.|++.
T Consensus 29 Lf~~s~ITrLtLSHNKl---~~vppnia~l~nlevln~~nnqie~l-p---~~issl~klr~lnvgmnrl~--------- 92 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKL---TVVPPNIAELKNLEVLNLSNNQIEEL-P---TSISSLPKLRILNVGMNRLN--------- 92 (264)
T ss_pred ccchhhhhhhhcccCce---eecCCcHHHhhhhhhhhcccchhhhc-C---hhhhhchhhhheecchhhhh---------
Confidence 45677888899999999 66888888999999999999998864 5 47888899999999888875
Q ss_pred cccccCCcccceeccccccccCCCCCCCccceecccccccccCc-hhHHHHHhcCCCccEEEccCCccCcccccchhhhh
Q 038163 95 IFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNT-SFLQIISESMSSLKYLSLSYYTLGINSSETLNQGL 173 (207)
Q Consensus 95 l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~-~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~ 173 (207)
.+|. +|+.++.|+.||++ +|.+.+ .+|..+. .+..|+.|+++.|.+- -+ |. .+
T Consensus 93 -----------~lpr-------gfgs~p~levldlt--ynnl~e~~lpgnff-~m~tlralyl~dndfe---~l-p~-dv 146 (264)
T KOG0617|consen 93 -----------ILPR-------GFGSFPALEVLDLT--YNNLNENSLPGNFF-YMTTLRALYLGDNDFE---IL-PP-DV 146 (264)
T ss_pred -----------cCcc-------ccCCCchhhhhhcc--ccccccccCCcchh-HHHHHHHHHhcCCCcc---cC-Ch-hh
Confidence 4677 89999999999999 998864 4577777 7889999999999996 77 77 89
Q ss_pred cCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 174 CSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 174 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
+.+++|+.|.+.+|.+. .+|.+++.+..|+.|
T Consensus 147 g~lt~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred hhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 99999999999999998 578888888877765
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.42 E-value=6.9e-16 Score=122.55 Aligned_cols=176 Identities=23% Similarity=0.363 Sum_probs=102.2
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|+++ .+|++ +..+..+.+++++.|.+ ..+++.++.+..+..++...|+++.. | ..++.+.++..+++.+
T Consensus 99 s~n~ls-~lp~~-i~s~~~l~~l~~s~n~~---~el~~~i~~~~~l~dl~~~~N~i~sl-p---~~~~~~~~l~~l~~~~ 169 (565)
T KOG0472|consen 99 SHNKLS-ELPEQ-IGSLISLVKLDCSSNEL---KELPDSIGRLLDLEDLDATNNQISSL-P---EDMVNLSKLSKLDLEG 169 (565)
T ss_pred ccchHh-hccHH-Hhhhhhhhhhhccccce---eecCchHHHHhhhhhhhccccccccC-c---hHHHHHHHHHHhhccc
Confidence 445555 45544 36666666666666666 55666666666666666666666543 2 2444444444444444
Q ss_pred CCCCh----------------------HHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceeccccccc
Q 038163 82 SPLHI----------------------SLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRI 134 (207)
Q Consensus 82 ~~~~~----------------------~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n 134 (207)
|.+.. ..|+.++.+.+| ..|++.. +| .|..|..|..+.++ .|
T Consensus 170 n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-lP--------ef~gcs~L~Elh~g--~N 238 (565)
T KOG0472|consen 170 NKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF-LP--------EFPGCSLLKELHVG--EN 238 (565)
T ss_pred cchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc-CC--------CCCccHHHHHHHhc--cc
Confidence 44331 223333333333 3344332 22 45666666666666 66
Q ss_pred ccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCcc
Q 038163 135 ALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 205 (207)
Q Consensus 135 ~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 205 (207)
.+. .+|+....+++++..|++..|.++ +. |. .+.-+.+|..||++.|.+++ +|..++++ .|+.
T Consensus 239 ~i~-~lpae~~~~L~~l~vLDLRdNklk---e~-Pd-e~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 239 QIE-MLPAEHLKHLNSLLVLDLRDNKLK---EV-PD-EICLLRSLERLDLSNNDISS-LPYSLGNL-HLKF 301 (565)
T ss_pred HHH-hhHHHHhcccccceeeeccccccc---cC-ch-HHHHhhhhhhhcccCCcccc-CCcccccc-eeee
Confidence 665 344333327777888888888887 77 77 77777888888888888874 56666665 4443
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=1e-12 Score=104.97 Aligned_cols=71 Identities=24% Similarity=0.178 Sum_probs=33.7
Q ss_pred CCCCCccceecccccccccCchhHHHHHhc----CCCccEEEccCCccCccc--ccchhhhhcCCCCCceEEecCCcCCC
Q 038163 118 FPHSKSLEHLDMEFMRIALNTSFLQIISES----MSSLKYLSLSYYTLGINS--SETLNQGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~----~~~L~~L~l~~n~~~~~~--~i~~~~~~~~~~~L~~L~l~~n~l~~ 191 (207)
+..+++|++|+++ +|.+++.....+.+. .+.|++|++++|.++..+ .+ .. .+..+++|+.+++++|.+.+
T Consensus 217 ~~~~~~L~~L~ls--~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-~~-~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 217 LASLKSLEVLNLG--DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL-AE-VLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred hcccCCCCEEecC--CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHH-HH-HHhcCCCccEEECCCCCCcH
Confidence 3345556666666 555554333222211 145666666666554111 11 12 33344556666666666654
Q ss_pred C
Q 038163 192 S 192 (207)
Q Consensus 192 ~ 192 (207)
+
T Consensus 293 ~ 293 (319)
T cd00116 293 E 293 (319)
T ss_pred H
Confidence 3
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=3.9e-14 Score=122.36 Aligned_cols=180 Identities=24% Similarity=0.255 Sum_probs=108.7
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
+++|.++ .+| .+++.+.+++.+....|.+ ..+|..+...+.|+.|....|.+....| ...+++.|++|+|.
T Consensus 248 is~n~l~-~lp-~wi~~~~nle~l~~n~N~l---~~lp~ri~~~~~L~~l~~~~nel~yip~----~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 248 ISHNNLS-NLP-EWIGACANLEALNANHNRL---VALPLRISRITSLVSLSAAYNELEYIPP----FLEGLKSLRTLDLQ 318 (1081)
T ss_pred cchhhhh-cch-HHHHhcccceEecccchhH---HhhHHHHhhhhhHHHHHhhhhhhhhCCC----cccccceeeeeeeh
Confidence 3567777 366 7788888888888888888 6778888888888888888888887544 77789999999999
Q ss_pred CCCCChHHHHhh-ccccc-c-----------------------------cCCcccceeccccccccCCCCCCCccceecc
Q 038163 81 DSPLHISLLQSI-ASIFP-L-----------------------------LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDM 129 (207)
Q Consensus 81 ~~~~~~~~~~~l-~~l~~-L-----------------------------~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l 129 (207)
.|.+.. .+... ..... + .+|.++....+ .+..+++|+.|+|
T Consensus 319 ~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-------~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 319 SNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-------VLVNFKHLKVLHL 390 (1081)
T ss_pred hccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-------hhccccceeeeee
Confidence 998763 22211 10000 1 33333332222 3445555555555
Q ss_pred cccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 130 EFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 130 ~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
+ +|.+. .+|......+..|++|++++|.++ .+ |. ++..+..|++|...+|++. ..| .+..++.|+++|
T Consensus 391 s--yNrL~-~fpas~~~kle~LeeL~LSGNkL~---~L-p~-tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 391 S--YNRLN-SFPASKLRKLEELEELNLSGNKLT---TL-PD-TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred c--ccccc-cCCHHHHhchHHhHHHhcccchhh---hh-hH-HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 5 55554 333222215555555555555555 55 54 5555555555555555554 234 455555555543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.32 E-value=1.1e-11 Score=114.26 Aligned_cols=75 Identities=27% Similarity=0.354 Sum_probs=47.0
Q ss_pred CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccc
Q 038163 17 GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIF 96 (207)
Q Consensus 17 ~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 96 (207)
...+|++|+++++.+ ..++..+..+++|+.|+++++.....+| .+..+++|++|++++|......+..+..++
T Consensus 609 ~~~~L~~L~L~~s~l---~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 609 RPENLVKLQMQGSKL---EKLWDGVHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELPSSIQYLN 681 (1153)
T ss_pred CccCCcEEECcCccc---cccccccccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccchhhhccC
Confidence 356677777777776 4566666667777777777665444445 456667777777777655445555555444
Q ss_pred cc
Q 038163 97 PL 98 (207)
Q Consensus 97 ~L 98 (207)
+|
T Consensus 682 ~L 683 (1153)
T PLN03210 682 KL 683 (1153)
T ss_pred CC
Confidence 44
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=1.1e-12 Score=104.87 Aligned_cols=178 Identities=22% Similarity=0.220 Sum_probs=97.1
Q ss_pred cccCCCCCcEEecCCCcccCCCcchhhhcCCCC---CCEEEcCCCcCCccccc-chhcccCC-CCccEEEcCCCCCChH-
Q 038163 14 GYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSS---LNSLYLSSNNFTETVTI-TTQELHNF-TNMEYLKLDDSPLHIS- 87 (207)
Q Consensus 14 ~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~---L~~L~l~~n~~~~~~~~-~~~~l~~l-~~L~~L~l~~~~~~~~- 87 (207)
++..+++|++|++++|.+ ....+..+..+.. |++|++++|.+++.... ....+..+ ++|+.|++++|.+++.
T Consensus 76 ~l~~~~~L~~L~l~~~~~--~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 76 GLTKGCGLQELDLSDNAL--GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHhcCceeEEEccCCCC--ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 345566777777777777 3344444444443 77777777776632110 00234455 6777777777776632
Q ss_pred ---HHHhhc---ccccc--cCCcccce----eccccccccCCCCCCCccceecccccccccCchhH----HHHHhcCCCc
Q 038163 88 ---LLQSIA---SIFPL--LKNLSMIG----CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL----QIISESMSSL 151 (207)
Q Consensus 88 ---~~~~l~---~l~~L--~~n~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~----~~l~~~~~~L 151 (207)
....+. .++.| .+|.+++. ++. .+..+++|+.|+++ +|.+++... ..+. .+++|
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-------~l~~~~~L~~L~L~--~n~i~~~~~~~l~~~~~-~~~~L 223 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAE-------GLKANCNLEVLDLN--NNGLTDEGASALAETLA-SLKSL 223 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH-------HHHhCCCCCEEecc--CCccChHHHHHHHHHhc-ccCCC
Confidence 222222 23333 55555431 112 33445678888888 777764433 3334 56678
Q ss_pred cEEEccCCccCcccccchhhhhc----CCCCCceEEecCCcCCC----CccccccCCCCCccC
Q 038163 152 KYLSLSYYTLGINSSETLNQGLC----SLVHLQELYIASNDLRG----SLPWCMANMTSLRIL 206 (207)
Q Consensus 152 ~~L~l~~n~~~~~~~i~~~~~~~----~~~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l 206 (207)
+.|++++|.++ +.. ...... ..+.|+.|++++|.+.+ .+...+..+++|+.+
T Consensus 224 ~~L~ls~n~l~--~~~-~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l 283 (319)
T cd00116 224 EVLNLGDNNLT--DAG-AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283 (319)
T ss_pred CEEecCCCcCc--hHH-HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 88888888776 311 110111 13678888888887762 222344445555554
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=5.5e-14 Score=111.91 Aligned_cols=161 Identities=27% Similarity=0.257 Sum_probs=122.8
Q ss_pred CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163 3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS 82 (207)
Q Consensus 3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~ 82 (207)
+|.+. .+|++ +..+.++..+++.+|.+ ...|+..-.++.|++||...|.+.. .| +.++.+.+|+.|++..|
T Consensus 146 ~N~i~-slp~~-~~~~~~l~~l~~~~n~l---~~l~~~~i~m~~L~~ld~~~N~L~t-lP---~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 146 NNQIS-SLPED-MVNLSKLSKLDLEGNKL---KALPENHIAMKRLKHLDCNSNLLET-LP---PELGGLESLELLYLRRN 216 (565)
T ss_pred ccccc-cCchH-HHHHHHHHHhhccccch---hhCCHHHHHHHHHHhcccchhhhhc-CC---hhhcchhhhHHHHhhhc
Confidence 45555 56655 57777788888888888 4444433348888888888887765 55 58888999999999999
Q ss_pred CCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163 83 PLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS 157 (207)
Q Consensus 83 ~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~ 157 (207)
.+. .+| .+..+..| +.|.+. .+|.- ...+++++..||+. .|++. +.|..+. -+.+|.+|+++
T Consensus 217 ki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae------~~~~L~~l~vLDLR--dNklk-e~Pde~c-lLrsL~rLDlS 283 (565)
T KOG0472|consen 217 KIR-FLP-EFPGCSLLKELHVGENQIE-MLPAE------HLKHLNSLLVLDLR--DNKLK-EVPDEIC-LLRSLERLDLS 283 (565)
T ss_pred ccc-cCC-CCCccHHHHHHHhcccHHH-hhHHH------Hhcccccceeeecc--ccccc-cCchHHH-Hhhhhhhhccc
Confidence 886 344 66666665 444443 35541 45588999999999 99998 6777766 68899999999
Q ss_pred CCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163 158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~ 191 (207)
+|.++ .+ |. .++.+ .|+.|-+.+|.+.+
T Consensus 284 NN~is---~L-p~-sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 284 NNDIS---SL-PY-SLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred CCccc---cC-Cc-ccccc-eeeehhhcCCchHH
Confidence 99999 88 87 89988 89999999999873
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.29 E-value=4.5e-12 Score=92.32 Aligned_cols=124 Identities=22% Similarity=0.335 Sum_probs=34.9
Q ss_pred CCCCEEEcCCCcCCcccccchhccc-CCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCc
Q 038163 45 SSLNSLYLSSNNFTETVTITTQELH-NFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKS 123 (207)
Q Consensus 45 ~~L~~L~l~~n~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~ 123 (207)
..++.|+|.+|.++.. +.+. .+.+|+.|++++|.+. .+. .+..++.
T Consensus 19 ~~~~~L~L~~n~I~~I-----e~L~~~l~~L~~L~Ls~N~I~--------------------~l~--------~l~~L~~ 65 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI-----ENLGATLDKLEVLDLSNNQIT--------------------KLE--------GLPGLPR 65 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----------------------T--------T----TT
T ss_pred cccccccccccccccc-----cchhhhhcCCCEEECCCCCCc--------------------ccc--------CccChhh
Confidence 3455566666655543 2333 3455666666666655 111 3444555
Q ss_pred cceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc---ccccCC
Q 038163 124 LEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP---WCMANM 200 (207)
Q Consensus 124 L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p---~~~~~l 200 (207)
|+.|+++ +|.++. +...+...+++|++|++++|.+..-+++ ..+..+++|+.|++.+|+++...- ..+..+
T Consensus 66 L~~L~L~--~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l---~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 66 LKTLDLS--NNRISS-ISEGLDKNLPNLQELYLSNNKISDLNEL---EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp --EEE----SS---S--CHHHHHH-TT--EEE-TTS---SCCCC---GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred hhhcccC--CCCCCc-cccchHHhCCcCCEEECcCCcCCChHHh---HHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 6666666 666653 2222211456666666666666522233 145556666666666666653211 334556
Q ss_pred CCCccCC
Q 038163 201 TSLRILD 207 (207)
Q Consensus 201 ~~L~~l~ 207 (207)
|+|+.||
T Consensus 140 P~Lk~LD 146 (175)
T PF14580_consen 140 PSLKVLD 146 (175)
T ss_dssp TT-SEET
T ss_pred ChhheeC
Confidence 6666554
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.27 E-value=4.8e-11 Score=110.13 Aligned_cols=176 Identities=19% Similarity=0.183 Sum_probs=92.1
Q ss_pred ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163 15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS 94 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 94 (207)
+..+++|++|++++|.. ...+|..+..+++|+.|++++|.....+| ..+ ++++|++|++++|......+....+
T Consensus 653 ls~l~~Le~L~L~~c~~--L~~lp~si~~L~~L~~L~L~~c~~L~~Lp---~~i-~l~sL~~L~Lsgc~~L~~~p~~~~n 726 (1153)
T PLN03210 653 LSMATNLETLKLSDCSS--LVELPSSIQYLNKLEDLDMSRCENLEILP---TGI-NLKSLYRLNLSGCSRLKSFPDISTN 726 (1153)
T ss_pred cccCCcccEEEecCCCC--ccccchhhhccCCCCEEeCCCCCCcCccC---CcC-CCCCCCEEeCCCCCCccccccccCC
Confidence 35555666666655554 35556666666666666666654333444 222 4556666666665433333322233
Q ss_pred cccc--cCCcccceecccc-ccccC----------------------CCCCCCccceecccccccccCchhHHHHHhcCC
Q 038163 95 IFPL--LKNLSMIGCEVNG-VIRGQ----------------------DFPHSKSLEHLDMEFMRIALNTSFLQIISESMS 149 (207)
Q Consensus 95 l~~L--~~n~~~~~~~~~~-~~~~~----------------------~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~ 149 (207)
+..| .+|.+.. +|... ..++. ....+++|+.|+++ +|.....+|..+. .++
T Consensus 727 L~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls--~n~~l~~lP~si~-~L~ 802 (1153)
T PLN03210 727 ISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS--DIPSLVELPSSIQ-NLH 802 (1153)
T ss_pred cCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCC--CCCCccccChhhh-CCC
Confidence 3333 3333221 22100 00000 01123567778888 7766556777777 888
Q ss_pred CccEEEccCCccCcccccchhhhhcCCC---------------------CCceEEecCCcCCCCccccccCCCCCccC
Q 038163 150 SLKYLSLSYYTLGINSSETLNQGLCSLV---------------------HLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 150 ~L~~L~l~~n~~~~~~~i~~~~~~~~~~---------------------~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
+|+.|++++|... +.+ |. .. .++ +++.|++++|.+. .+|..+..+++|+.|
T Consensus 803 ~L~~L~Ls~C~~L--~~L-P~-~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L 874 (1153)
T PLN03210 803 KLEHLEIENCINL--ETL-PT-GI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFL 874 (1153)
T ss_pred CCCEEECCCCCCc--Cee-CC-CC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEE
Confidence 8888888877433 255 43 22 233 4455555555554 456666777777655
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.20 E-value=2.9e-11 Score=105.91 Aligned_cols=112 Identities=19% Similarity=0.142 Sum_probs=62.8
Q ss_pred CccEEEcCCCCCChHHHHhhcccccc--cCCcccceecccc----cccc-----CCCC-CCCccceecccccccccCchh
Q 038163 73 NMEYLKLDDSPLHISLLQSIASIFPL--LKNLSMIGCEVNG----VIRG-----QDFP-HSKSLEHLDMEFMRIALNTSF 140 (207)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~l~~l~~L--~~n~~~~~~~~~~----~~~~-----~~~~-~~~~L~~L~l~~~~n~~~~~~ 140 (207)
+|++|++++|.+. .+|.....+..| ..|.+.. +|... .+++ ..+. ...+|+.|+++ +|.++ .+
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~-LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS--~N~Ls-sI 417 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTS-LPALPSGLKELIVSGNRLTSLPVLPSELKELMVS--GNRLT-SL 417 (788)
T ss_pred ccceEecCCCccC-CCCCCCcccceehhhcccccc-CcccccccceEEecCCcccCCCCcccCCCEEEcc--CCcCC-CC
Confidence 6788888888776 333333334433 4444443 23200 0000 0000 12356666666 66665 23
Q ss_pred HHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccccc
Q 038163 141 LQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMA 198 (207)
Q Consensus 141 ~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 198 (207)
|.. ..+|+.|++++|.++ .+ |. .+..+++|+.+++++|++++..+..+.
T Consensus 418 P~l----~~~L~~L~Ls~NqLt---~L-P~-sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 418 PML----PSGLLSLSVYRNQLT---RL-PE-SLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred Ccc----hhhhhhhhhccCccc---cc-Ch-HHhhccCCCeEECCCCCCCchHHHHHH
Confidence 322 124667777777777 77 76 777888888888888888876665553
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.18 E-value=3.7e-11 Score=105.27 Aligned_cols=49 Identities=27% Similarity=0.176 Sum_probs=31.5
Q ss_pred CccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 150 SLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 150 ~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
.|+.|++++|.++ .+ |. . ..+|+.|++++|+++ .+|..+..+++|+.++
T Consensus 403 ~L~~LdLS~N~Ls---sI-P~-l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 403 ELKELMVSGNRLT---SL-PM-L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred CCCEEEccCCcCC---CC-Cc-c---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 4566666666665 45 43 2 235667777777776 5677777777777653
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=4e-12 Score=101.07 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=56.7
Q ss_pred CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC-CCCChHHHHhhcccccc
Q 038163 20 KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD-SPLHISLLQSIASIFPL 98 (207)
Q Consensus 20 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L 98 (207)
..++++|..|+| ....+..|..+++|+.|||+.|.|+.+.| ..+..++++-.|-+++ |.|+..-...+..|.++
T Consensus 68 ~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p---~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAP---DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCc--ccCChhhccchhhhceecccccchhhcCh---HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 346789999999 34445689999999999999999999999 7888888877775555 88885444455555554
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=7.6e-13 Score=109.41 Aligned_cols=166 Identities=23% Similarity=0.243 Sum_probs=126.0
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|+.|.+. .+|.+ ++.+..|+.+.+..|.+ -.+|..+.++..|.++|++.|.++. .| ..++.++ |+.|-++
T Consensus 82 lsrNR~~-elp~~-~~~f~~Le~liLy~n~~---r~ip~~i~~L~~lt~l~ls~NqlS~-lp---~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 82 LSRNRFS-ELPEE-ACAFVSLESLILYHNCI---RTIPEAICNLEALTFLDLSSNQLSH-LP---DGLCDLP-LKVLIVS 151 (722)
T ss_pred ccccccc-cCchH-HHHHHHHHHHHHHhccc---eecchhhhhhhHHHHhhhccchhhc-CC---hhhhcCc-ceeEEEe
Confidence 4567777 57765 47777888888888888 5678888888888888888888875 45 4666655 8888888
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|+++ .++..++.+..| +.|.+.. +|. .++.+.+|+.+.+. .|.+. .+|+.+. .+ .|..|+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lps-------ql~~l~slr~l~vr--Rn~l~-~lp~El~-~L-pLi~lD 217 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPS-------QLGYLTSLRDLNVR--RNHLE-DLPEELC-SL-PLIRLD 217 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhhh-chH-------HhhhHHHHHHHHHh--hhhhh-hCCHHHh-CC-ceeeee
Confidence 88876 556666544444 6666654 565 78888888888888 88876 5666666 44 488999
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC 196 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 196 (207)
+++|+++ .| |. .|.++..|++|-|..|.++. .|..
T Consensus 218 fScNkis---~i-Pv-~fr~m~~Lq~l~LenNPLqS-PPAq 252 (722)
T KOG0532|consen 218 FSCNKIS---YL-PV-DFRKMRHLQVLQLENNPLQS-PPAQ 252 (722)
T ss_pred cccCcee---ec-ch-hhhhhhhheeeeeccCCCCC-ChHH
Confidence 9999998 88 88 99999999999999999985 3443
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.16 E-value=6.2e-11 Score=104.04 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=39.7
Q ss_pred CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197 (207)
Q Consensus 122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 197 (207)
++|+.|+++ +|.++. +|..+ .++|+.|++++|.++ .+ |. .+ .++|+.|++++|.+.. +|..+
T Consensus 325 ~sL~~L~Ls--~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~---~L-P~-~l--p~~L~~LdLs~N~Lt~-LP~~l 386 (754)
T PRK15370 325 PGLKTLEAG--ENALTS-LPASL---PPELQVLDVSKNQIT---VL-PE-TL--PPTITTLDVSRNALTN-LPENL 386 (754)
T ss_pred ccceecccc--CCcccc-CChhh---cCcccEEECCCCCCC---cC-Ch-hh--cCCcCEEECCCCcCCC-CCHhH
Confidence 466777777 776653 44332 257778888888776 66 65 44 3578888888888774 45433
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.12 E-value=1.7e-10 Score=101.38 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=43.6
Q ss_pred CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC 196 (207)
Q Consensus 122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 196 (207)
++|+.|+++ +|.++ .+|..+ .+.|+.|++++|.++ .+ |. .+. .+|+.|++++|++. .+|..
T Consensus 346 ~sL~~L~Ls--~N~L~-~LP~~l---p~~L~~LdLs~N~Lt---~L-P~-~l~--~sL~~LdLs~N~L~-~LP~s 406 (754)
T PRK15370 346 PELQVLDVS--KNQIT-VLPETL---PPTITTLDVSRNALT---NL-PE-NLP--AALQIMQASRNNLV-RLPES 406 (754)
T ss_pred CcccEEECC--CCCCC-cCChhh---cCCcCEEECCCCcCC---CC-CH-hHH--HHHHHHhhccCCcc-cCchh
Confidence 578888888 88886 455443 257888888888887 77 65 443 36888888888887 34543
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=4e-11 Score=87.39 Aligned_cols=129 Identities=22% Similarity=0.253 Sum_probs=39.2
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhc-CCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIG-SFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS 94 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 94 (207)
.+..++++|+|.+|.| ..+. .++ .+.+|+.|++++|.++.. ..+..++.|++|++++|.++....
T Consensus 16 ~n~~~~~~L~L~~n~I---~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-----~~l~~L~~L~~L~L~~N~I~~i~~----- 81 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQI---STIE-NLGATLDKLEVLDLSNNQITKL-----EGLPGLPRLKTLDLSNNRISSISE----- 81 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S-------TT----TT--EEE--SS---S-CH-----
T ss_pred cccccccccccccccc---cccc-chhhhhcCCCEEECCCCCCccc-----cCccChhhhhhcccCCCCCCcccc-----
Confidence 5556788999999999 3333 344 578999999999999864 467788999999999999873211
Q ss_pred cccccCCcccceeccccccccCCC-CCCCccceecccccccccCch-hHHHHHhcCCCccEEEccCCccCcccccchhhh
Q 038163 95 IFPLLKNLSMIGCEVNGVIRGQDF-PHSKSLEHLDMEFMRIALNTS-FLQIISESMSSLKYLSLSYYTLGINSSETLNQG 172 (207)
Q Consensus 95 l~~L~~n~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~n~~~~~-~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~ 172 (207)
.+ ..+++|+.|.++ +|.+... ....+. .+++|+.|++.+|.+...... ....
T Consensus 82 ----------------------~l~~~lp~L~~L~L~--~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~Y-R~~v 135 (175)
T PF14580_consen 82 ----------------------GLDKNLPNLQELYLS--NNKISDLNELEPLS-SLPKLRVLSLEGNPVCEKKNY-RLFV 135 (175)
T ss_dssp ----------------------HHHHH-TT--EEE-T--TS---SCCCCGGGG-G-TT--EEE-TT-GGGGSTTH-HHHH
T ss_pred ----------------------chHHhCCcCCEEECc--CCcCCChHHhHHHH-cCCCcceeeccCCcccchhhH-HHHH
Confidence 11 124455566666 5555421 123344 555666666666655522222 1123
Q ss_pred hcCCCCCceEEe
Q 038163 173 LCSLVHLQELYI 184 (207)
Q Consensus 173 ~~~~~~L~~L~l 184 (207)
+..+++|+.||-
T Consensus 136 i~~lP~Lk~LD~ 147 (175)
T PF14580_consen 136 IYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT-SEETT
T ss_pred HHHcChhheeCC
Confidence 445566665553
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.05 E-value=2.8e-12 Score=111.06 Aligned_cols=183 Identities=20% Similarity=0.157 Sum_probs=131.2
Q ss_pred CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc-----------------h
Q 038163 3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT-----------------T 65 (207)
Q Consensus 3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----------------~ 65 (207)
+|.+. .+|.+ +..+.+|+.|++..|.+ ..+|....++.+|++|+|..|++....+-. +
T Consensus 273 ~N~l~-~lp~r-i~~~~~L~~l~~~~nel---~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 273 HNRLV-ALPLR-ISRITSLVSLSAAYNEL---EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred chhHH-hhHHH-HhhhhhHHHHHhhhhhh---hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc
Confidence 44453 45533 46666777777777776 556666666777777777777665321100 0
Q ss_pred -----hcccCCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccc
Q 038163 66 -----QELHNFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA 135 (207)
Q Consensus 66 -----~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~ 135 (207)
..-..++.|+.|.+.+|.+++...+.+.....| ++|++.. +|.. .+.++..|+.|+++ ||+
T Consensus 348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas------~~~kle~LeeL~LS--GNk 418 (1081)
T KOG0618|consen 348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPAS------KLRKLEELEELNLS--GNK 418 (1081)
T ss_pred cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHH------HHhchHHhHHHhcc--cch
Confidence 011135668888888898887766666666655 8888765 5543 78889999999999 999
Q ss_pred cCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 136 LNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 136 ~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
++ .+|..+. .|+.|+.|..-.|.+. .+ | .+..++.|+.+|++.|.++..........++|++||
T Consensus 419 L~-~Lp~tva-~~~~L~tL~ahsN~l~---~f-P--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 419 LT-TLPDTVA-NLGRLHTLRAHSNQLL---SF-P--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred hh-hhhHHHH-hhhhhHHHhhcCCcee---ec-h--hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence 98 7788888 8999999999999998 77 6 688899999999999999864333334448888876
No 26
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=1.3e-09 Score=94.78 Aligned_cols=60 Identities=23% Similarity=0.394 Sum_probs=27.7
Q ss_pred CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163 21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
++.|+|++|.+ .+.+|..+..+++|+.|++++|.+.+.+| ..+..+++|+.|++++|.+.
T Consensus 420 v~~L~L~~n~L--~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP---~~~~~l~~L~~LdLs~N~ls 479 (623)
T PLN03150 420 IDGLGLDNQGL--RGFIPNDISKLRHLQSINLSGNSIRGNIP---PSLGSITSLEVLDLSYNSFN 479 (623)
T ss_pred EEEEECCCCCc--cccCCHHHhCCCCCCEEECCCCcccCcCC---hHHhCCCCCCEEECCCCCCC
Confidence 33444444444 34444444444444444444444444444 34444444444444444443
No 27
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=8.1e-10 Score=95.97 Aligned_cols=88 Identities=25% Similarity=0.438 Sum_probs=80.2
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.|.+|+. +..+++|+.|++++|.+ .+.+|..+..+++|+.|++++|.+++.+| ..+..+++|++|+++
T Consensus 425 L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l--~g~iP~~~~~l~~L~~LdLs~N~lsg~iP---~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 425 LDNQGLRGFIPND-ISKLRHLQSINLSGNSI--RGNIPPSLGSITSLEVLDLSYNSFNGSIP---ESLGQLTSLRILNLN 498 (623)
T ss_pred CCCCCccccCCHH-HhCCCCCCEEECCCCcc--cCcCChHHhCCCCCCEEECCCCCCCCCCc---hHHhcCCCCCEEECc
Confidence 5678899999866 79999999999999999 67899999999999999999999999999 889999999999999
Q ss_pred CCCCChHHHHhhcc
Q 038163 81 DSPLHISLLQSIAS 94 (207)
Q Consensus 81 ~~~~~~~~~~~l~~ 94 (207)
+|.+.+..|..+..
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99999888777654
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=1.2e-10 Score=90.24 Aligned_cols=125 Identities=23% Similarity=0.268 Sum_probs=93.3
Q ss_pred CCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChH--HHHhhccc
Q 038163 18 LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHIS--LLQSIASI 95 (207)
Q Consensus 18 l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l 95 (207)
-+.|+++|+|+|.| ..+.+++.-.|.++.|+++.|.+..+ +.+..+++|+.||+++|.+... .-..++++
T Consensus 283 Wq~LtelDLS~N~I---~~iDESvKL~Pkir~L~lS~N~i~~v-----~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 283 WQELTELDLSGNLI---TQIDESVKLAPKLRRLILSQNRIRTV-----QNLAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred Hhhhhhccccccch---hhhhhhhhhccceeEEeccccceeee-----hhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 46688999999999 77888998899999999999999865 5788999999999999987632 23345555
Q ss_pred ccc--cCCcccceeccccccccCCCCCCCccceecccccccccCch-hHHHHHhcCCCccEEEccCCccC
Q 038163 96 FPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTS-FLQIISESMSSLKYLSLSYYTLG 162 (207)
Q Consensus 96 ~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~-~~~~l~~~~~~L~~L~l~~n~~~ 162 (207)
..| ++|.+.. + + ++.++.+|..||+. +|++... ....++ .+|.|..+.+.+|.++
T Consensus 355 KtL~La~N~iE~-L-S-------GL~KLYSLvnLDl~--~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 355 KTLKLAQNKIET-L-S-------GLRKLYSLVNLDLS--SNQIEELDEVNHIG-NLPCLETLRLTGNPLA 412 (490)
T ss_pred eeeehhhhhHhh-h-h-------hhHhhhhheecccc--ccchhhHHHhcccc-cccHHHHHhhcCCCcc
Confidence 555 5555543 1 1 56667777778887 7777532 235566 7777777777777776
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=2.1e-11 Score=101.07 Aligned_cols=164 Identities=25% Similarity=0.313 Sum_probs=136.7
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI 95 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 95 (207)
..+......|++.|++ .++|..+..+..|+.+.++.|.+... | ..+..+..|.+++++.|+++ .++..++.|
T Consensus 72 ~~ltdt~~aDlsrNR~---~elp~~~~~f~~Le~liLy~n~~r~i-p---~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l 143 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRF---SELPEEACAFVSLESLILYHNCIRTI-P---EAICNLEALTFLDLSSNQLS-HLPDGLCDL 143 (722)
T ss_pred ccccchhhhhcccccc---ccCchHHHHHHHHHHHHHHhccceec-c---hhhhhhhHHHHhhhccchhh-cCChhhhcC
Confidence 4455566789999999 78999999999999999999998864 5 57889999999999999987 566666554
Q ss_pred c--cc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhh
Q 038163 96 F--PL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQ 171 (207)
Q Consensus 96 ~--~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~ 171 (207)
+ -| ..|+++. +|. .++..+.|..+|.+ +|.+. .+|..+. .+.+|+.|.+..|.+. .+ |.
T Consensus 144 pLkvli~sNNkl~~-lp~-------~ig~~~tl~~ld~s--~nei~-slpsql~-~l~slr~l~vrRn~l~---~l-p~- 206 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTS-LPE-------EIGLLPTLAHLDVS--KNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE---DL-PE- 206 (722)
T ss_pred cceeEEEecCcccc-CCc-------ccccchhHHHhhhh--hhhhh-hchHHhh-hHHHHHHHHHhhhhhh---hC-CH-
Confidence 4 33 7777664 676 77888999999999 99987 6788888 8999999999999998 88 87
Q ss_pred hhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 172 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 172 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
.+..+ .|..||++.|++. .+|-+|.+|+.|++|
T Consensus 207 El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 207 ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVL 239 (722)
T ss_pred HHhCC-ceeeeecccCcee-ecchhhhhhhhheee
Confidence 77744 4889999999998 589999999999875
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=2.2e-09 Score=64.71 Aligned_cols=60 Identities=33% Similarity=0.536 Sum_probs=51.4
Q ss_pred CCCcEEecCCCcccCCCcch-hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCC
Q 038163 19 RKLKSLDLSGVGVRDGSKLL-QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPL 84 (207)
Q Consensus 19 ~~L~~L~ls~n~i~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 84 (207)
++|++|++++|.+ ..+| ..|..+++|++|++++|.+....+ ..+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l---~~i~~~~f~~l~~L~~L~l~~N~l~~i~~---~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL---TEIPPDSFSNLPNLETLDLSNNNLTSIPP---DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE---SEECTTTTTTGTTESEEEETSSSESEEET---TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC---CccCHHHHcCCCCCCEeEccCCccCccCH---HHHcCCCCCCEEeCcCCcC
Confidence 4688999999999 4455 578889999999999999998777 7889999999999999874
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=1.3e-09 Score=89.86 Aligned_cols=167 Identities=27% Similarity=0.360 Sum_probs=118.1
Q ss_pred CCCccCceecCccccCCC-CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 2 SFNEINNLVVPQGYNGLR-KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~-~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
.+|.++ .+|+. ...+. +|++|+++.|.+ ..+|..+..+++|+.|+++.|.++...+ ..+..+.|+.|+++
T Consensus 124 ~~n~i~-~i~~~-~~~~~~nL~~L~l~~N~i---~~l~~~~~~l~~L~~L~l~~N~l~~l~~----~~~~~~~L~~L~ls 194 (394)
T COG4886 124 DNNNIT-DIPPL-IGLLKSNLKELDLSDNKI---ESLPSPLRNLPNLKNLDLSFNDLSDLPK----LLSNLSNLNNLDLS 194 (394)
T ss_pred CCcccc-cCccc-cccchhhcccccccccch---hhhhhhhhccccccccccCCchhhhhhh----hhhhhhhhhheecc
Confidence 345555 46654 35553 888889999888 5666778888899999999998887543 33477888889999
Q ss_pred CCCCChHHHHh---hcccccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQS---IASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~---l~~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.+. .++.. ...+..+ +.|.... .+. .+..+..+..+.+. .|++. ..+..+. .++.++.|+
T Consensus 195 ~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~-------~~~~~~~l~~l~l~--~n~~~-~~~~~~~-~l~~l~~L~ 261 (394)
T COG4886 195 GNKIS-DLPPEIELLSALEELDLSNNSIIE-LLS-------SLSNLKNLSGLELS--NNKLE-DLPESIG-NLSNLETLD 261 (394)
T ss_pred CCccc-cCchhhhhhhhhhhhhhcCCccee-cch-------hhhhcccccccccC--Cceee-eccchhc-cccccceec
Confidence 98876 33332 2335555 4453222 233 56677788888877 77775 3356666 777899999
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC 196 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 196 (207)
+++|.++ .+ + .+....+++.|++++|.+....|..
T Consensus 262 ~s~n~i~---~i-~--~~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 262 LSNNQIS---SI-S--SLGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccccc---cc-c--cccccCccCEEeccCccccccchhh
Confidence 9999998 76 4 3778899999999999988655543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.5e-09 Score=86.35 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=99.0
Q ss_pred ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHH-Hhhc
Q 038163 15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLL-QSIA 93 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~ 93 (207)
...+++++.||+|.|-+..+..+-+....+++|+.|+++.|.+....-. ..-..+++|+.|.++.|.++.... ..+.
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s--~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS--NTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc--cchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 4567788888888887744445556667788888888888876533220 111256778888888888875432 2233
Q ss_pred ccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchh-HHHHHhcCCCccEEEccCCccCccccc
Q 038163 94 SIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYYTLGINSSE 167 (207)
Q Consensus 94 ~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n~~~~~~~i 167 (207)
.++++ .+|........ ...-+..|+.|||+ +|.+-... ..... .++.|..|+++.|.+. ++
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~-------~~~i~~~L~~LdLs--~N~li~~~~~~~~~-~l~~L~~Lnls~tgi~---si 286 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKAT-------STKILQTLQELDLS--NNNLIDFDQGYKVG-TLPGLNQLNLSSTGIA---SI 286 (505)
T ss_pred hCCcHHHhhhhcccccceecc-------hhhhhhHHhhcccc--CCcccccccccccc-cccchhhhhccccCcc---hh
Confidence 44444 45532221122 33345678888888 77654222 23444 6788888888888776 43
Q ss_pred c-hh----hhhcCCCCCceEEecCCcCCC
Q 038163 168 T-LN----QGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 168 ~-~~----~~~~~~~~L~~L~l~~n~l~~ 191 (207)
+ |. +....+++|+.|++..|++..
T Consensus 287 ~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 287 AEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred cCCCccchhhhcccccceeeecccCcccc
Confidence 1 22 012346788888888888864
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.7e-09 Score=87.35 Aligned_cols=140 Identities=21% Similarity=0.198 Sum_probs=86.0
Q ss_pred cCCCCCcEEecCCCcccCCCcch--hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhc
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLL--QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIA 93 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 93 (207)
.++.+|+++.+.++.+. ..+ .....|++++.|||+.|-+..+.+.. .....+++|+.|.++.|.+......
T Consensus 118 sn~kkL~~IsLdn~~V~---~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~-~i~eqLp~Le~LNls~Nrl~~~~~s--- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE---DAGIEEYSKILPNVRDLDLSRNLFHNWFPVL-KIAEQLPSLENLNLSSNRLSNFISS--- 190 (505)
T ss_pred hhHHhhhheeecCcccc---ccchhhhhhhCCcceeecchhhhHHhHHHHH-HHHHhcccchhcccccccccCCccc---
Confidence 56788999999999983 223 46678999999999999888765421 4456899999999999987621100
Q ss_pred ccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhh
Q 038163 94 SIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGL 173 (207)
Q Consensus 94 ~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~ 173 (207)
. .-..+.+|+.|.++ .|.+++.....+...||+|..|+++.|... ... .. ..
T Consensus 191 ------------~----------~~~~l~~lK~L~l~--~CGls~k~V~~~~~~fPsl~~L~L~~N~~~--~~~-~~-~~ 242 (505)
T KOG3207|consen 191 ------------N----------TTLLLSHLKQLVLN--SCGLSWKDVQWILLTFPSLEVLYLEANEII--LIK-AT-ST 242 (505)
T ss_pred ------------c----------chhhhhhhheEEec--cCCCCHHHHHHHHHhCCcHHHhhhhccccc--cee-cc-hh
Confidence 0 11123455666666 666665444433335666666666666321 011 11 22
Q ss_pred cCCCCCceEEecCCcCC
Q 038163 174 CSLVHLQELYIASNDLR 190 (207)
Q Consensus 174 ~~~~~L~~L~l~~n~l~ 190 (207)
.-++.|++|||++|.+.
T Consensus 243 ~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 243 KILQTLQELDLSNNNLI 259 (505)
T ss_pred hhhhHHhhccccCCccc
Confidence 33455566666666554
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.70 E-value=6.3e-09 Score=81.85 Aligned_cols=170 Identities=21% Similarity=0.189 Sum_probs=106.1
Q ss_pred ccCCCCCcEEecCCCcccCCCcchh----hhcCCCCCCEEEcCCCcCCcccccc----------hhcccCCCCccEEEcC
Q 038163 15 YNGLRKLKSLDLSGVGVRDGSKLLQ----SIGSFSSLNSLYLSSNNFTETVTIT----------TQELHNFTNMEYLKLD 80 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~----------~~~l~~l~~L~~L~l~ 80 (207)
+...++|++|+||.|-+ ....++ .+..+..|++|.|++|.+....... ......-+.|+++...
T Consensus 88 L~~~~~L~~ldLSDNA~--G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAF--GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HhcCCceeEeecccccc--CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 45566888888888888 444333 4456778888888888765322100 0112334678888888
Q ss_pred CCCCChH----HHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchh----HHHHHhc
Q 038163 81 DSPLHIS----LLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF----LQIISES 147 (207)
Q Consensus 81 ~~~~~~~----~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~----~~~l~~~ 147 (207)
+|++... ....+...+.| ..|.+...-. -+--+.+.++++|+.||+. .|.|+... ...+. .
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~---~al~eal~~~~~LevLdl~--DNtft~egs~~LakaL~-s 239 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV---TALAEALEHCPHLEVLDLR--DNTFTLEGSVALAKALS-S 239 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchh---HHHHHHHHhCCcceeeecc--cchhhhHHHHHHHHHhc-c
Confidence 8887643 22333333333 4444432100 0001267899999999999 99887543 35566 7
Q ss_pred CCCccEEEccCCccCcccccc-hhhhhcCCCCCceEEecCCcCCCC
Q 038163 148 MSSLKYLSLSYYTLGINSSET-LNQGLCSLVHLQELYIASNDLRGS 192 (207)
Q Consensus 148 ~~~L~~L~l~~n~~~~~~~i~-~~~~~~~~~~L~~L~l~~n~l~~~ 192 (207)
|+.|+.+++++|.+...|.+. ....-...++|+.|.+.+|.+..+
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 889999999999998544431 110122367889999999988743
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=1.4e-08 Score=61.16 Aligned_cols=61 Identities=28% Similarity=0.317 Sum_probs=46.0
Q ss_pred CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcC
Q 038163 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDL 189 (207)
Q Consensus 122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l 189 (207)
++|++|+++ +|.++...+..+. .+++|+.|++++|.++ .+ +...|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~--~n~l~~i~~~~f~-~l~~L~~L~l~~N~l~---~i-~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLS--NNKLTEIPPDSFS-NLPNLETLDLSNNNLT---SI-PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEET--SSTESEECTTTTT-TGTTESEEEETSSSES---EE-ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECC--CCCCCccCHHHHc-CCCCCCEeEccCCccC---cc-CHHHHcCCCCCCEEeCcCCcC
Confidence 357788888 8888754455666 7888888888888887 66 444788888888888888864
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=2.9e-08 Score=81.91 Aligned_cols=139 Identities=27% Similarity=0.333 Sum_probs=101.6
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
+++|.+. .+|. .+..+++|+.|++++|++ ..+|......+.|+.|++++|.++.. | ........|+++.++
T Consensus 147 l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l---~~l~~~~~~~~~L~~L~ls~N~i~~l-~---~~~~~~~~L~~l~~~ 217 (394)
T COG4886 147 LSDNKIE-SLPS-PLRNLPNLKNLDLSFNDL---SDLPKLLSNLSNLNNLDLSGNKISDL-P---PEIELLSALEELDLS 217 (394)
T ss_pred ccccchh-hhhh-hhhccccccccccCCchh---hhhhhhhhhhhhhhheeccCCccccC-c---hhhhhhhhhhhhhhc
Confidence 3566666 4542 268899999999999999 66787777899999999999999965 4 344556669999999
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.+. ..+..+..+..+ ..|.+.. ++. .++.+..++.|+++ +|.++.... +. ....++.++
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~-------~~~~l~~l~~L~~s--~n~i~~i~~--~~-~~~~l~~L~ 283 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE-------SIGNLSNLETLDLS--NNQISSISS--LG-SLTNLRELD 283 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceeee-ccc-------hhccccccceeccc--ccccccccc--cc-ccCccCEEe
Confidence 99532 223333333333 4444432 133 66778889999999 999984333 66 788999999
Q ss_pred ccCCccC
Q 038163 156 LSYYTLG 162 (207)
Q Consensus 156 l~~n~~~ 162 (207)
++++.+.
T Consensus 284 ~s~n~~~ 290 (394)
T COG4886 284 LSGNSLS 290 (394)
T ss_pred ccCcccc
Confidence 9999998
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.9e-08 Score=78.24 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=66.6
Q ss_pred CCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccc
Q 038163 46 SLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLE 125 (207)
Q Consensus 46 ~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~ 125 (207)
.|+++|+++|.|+-.. ++..-.+.++.|++++|.+. . .. .++++++|+
T Consensus 285 ~LtelDLS~N~I~~iD----ESvKL~Pkir~L~lS~N~i~-------------------~--v~-------nLa~L~~L~ 332 (490)
T KOG1259|consen 285 ELTELDLSGNLITQID----ESVKLAPKLRRLILSQNRIR-------------------T--VQ-------NLAELPQLQ 332 (490)
T ss_pred hhhhccccccchhhhh----hhhhhccceeEEecccccee-------------------e--eh-------hhhhcccce
Confidence 4555666666555332 23344455666666666654 1 11 556667777
Q ss_pred eecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCC-ccccccCCCCCc
Q 038163 126 HLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGS-LPWCMANMTSLR 204 (207)
Q Consensus 126 ~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~ 204 (207)
.||++ +|.++ ....+=. .+.+++.|.++.|.+- .+ + .++++-+|..||+++|++..- --..++++|.|+
T Consensus 333 ~LDLS--~N~Ls-~~~Gwh~-KLGNIKtL~La~N~iE---~L--S-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 333 LLDLS--GNLLA-ECVGWHL-KLGNIKTLKLAQNKIE---TL--S-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE 402 (490)
T ss_pred Eeecc--cchhH-hhhhhHh-hhcCEeeeehhhhhHh---hh--h-hhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence 77777 77665 2223322 5667777777777664 43 2 566667777777777776531 113455555544
Q ss_pred c
Q 038163 205 I 205 (207)
Q Consensus 205 ~ 205 (207)
+
T Consensus 403 ~ 403 (490)
T KOG1259|consen 403 T 403 (490)
T ss_pred H
Confidence 3
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9e-09 Score=79.73 Aligned_cols=158 Identities=25% Similarity=0.212 Sum_probs=81.3
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCC-cCCcccccchhcccCCCCccEEEcCCCCCChHHHH----
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSN-NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQ---- 90 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---- 90 (207)
..+++|+.|++.++.+ .+.+...+.+-.+|+.|+++.+ .++..... -.+..++.|+.|++++|....+...
T Consensus 207 s~C~kLk~lSlEg~~L--dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~--ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRL--DDPIVNTIAKNSNLVRLNLSMCSGFTENALQ--LLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHHhhhhcccccccc--CcHHHHHHhccccceeeccccccccchhHHH--HHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 4455666666666666 4555556666666666666655 23321110 1234566677777777665433211
Q ss_pred hh-cccccc--c---CCcccceeccccccccCCCCCCCccceeccccccc-ccCchhHHHHHhcCCCccEEEccCCccCc
Q 038163 91 SI-ASIFPL--L---KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRI-ALNTSFLQIISESMSSLKYLSLSYYTLGI 163 (207)
Q Consensus 91 ~l-~~l~~L--~---~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n-~~~~~~~~~l~~~~~~L~~L~l~~n~~~~ 163 (207)
++ .++..| + .|....-+.. -..+++++.+||++ +| .++......+. .++.|++|.++.|-...
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~t-------L~~rcp~l~~LDLS--D~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLST-------LVRRCPNLVHLDLS--DSVMLKNDCFQEFF-KFNYLQHLSLSRCYDII 352 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHH-------HHHhCCceeeeccc--cccccCchHHHHHH-hcchheeeehhhhcCCC
Confidence 11 123333 0 0110001111 12357777777777 55 45544455555 67777777777664321
Q ss_pred ccccchhhhhcCCCCCceEEecCCcCC
Q 038163 164 NSSETLNQGLCSLVHLQELYIASNDLR 190 (207)
Q Consensus 164 ~~~i~~~~~~~~~~~L~~L~l~~n~l~ 190 (207)
... .. .+...++|.+|++.++--.
T Consensus 353 p~~--~~-~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 353 PET--LL-ELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hHH--ee-eeccCcceEEEEeccccCc
Confidence 111 11 3555677777777776544
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.47 E-value=1.2e-07 Score=74.70 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=19.8
Q ss_pred cCCCCCcEEecCCCcccCCCc----chhhhcCCCCCCEEEcCC
Q 038163 16 NGLRKLKSLDLSGVGVRDGSK----LLQSIGSFSSLNSLYLSS 54 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~----~~~~~~~l~~L~~L~l~~ 54 (207)
..+..++++++|+|.+ ... +.+.+...+.|+.-+++.
T Consensus 27 ~~~~s~~~l~lsgnt~--G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTF--GTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred cccCceEEEeccCCch--hHHHHHHHHHHHhhcccceeeehHh
Confidence 4566677777777776 322 333334444555555443
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=1e-08 Score=87.77 Aligned_cols=58 Identities=28% Similarity=0.347 Sum_probs=47.1
Q ss_pred CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163 20 KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 20 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
+|.+.+.++|.+ ..+..++.-++.++.|||+.|.++.+ +.+..+++|++|||++|.+.
T Consensus 165 ~L~~a~fsyN~L---~~mD~SLqll~ale~LnLshNk~~~v-----~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 165 KLATASFSYNRL---VLMDESLQLLPALESLNLSHNKFTKV-----DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred hHhhhhcchhhH---HhHHHHHHHHHHhhhhccchhhhhhh-----HHHHhcccccccccccchhc
Confidence 355667888888 56777777888999999999988865 57788899999999999876
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.33 E-value=2e-07 Score=83.54 Aligned_cols=71 Identities=31% Similarity=0.369 Sum_probs=55.1
Q ss_pred eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163 9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
.++..+|..++.|++||+++|.- ...+|..++.+-+|++|++++..+. .+| ..+.++..|++|++..+...
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~--l~~LP~~I~~Li~LryL~L~~t~I~-~LP---~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSS--LSKLPSSIGELVHLRYLDLSDTGIS-HLP---SGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCc--cCcCChHHhhhhhhhcccccCCCcc-ccc---hHHHHHHhhheecccccccc
Confidence 45666677888888888887765 5778888888888888888888877 456 67788888888888776643
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=3.3e-07 Score=76.23 Aligned_cols=63 Identities=27% Similarity=0.341 Sum_probs=40.3
Q ss_pred ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163 15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
+..+++++.|++..|.| ..+...+..+++|++|++++|.|+... .+..+..|+.|++++|.+.
T Consensus 91 l~~~~~l~~l~l~~n~i---~~i~~~l~~~~~L~~L~ls~N~I~~i~-----~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI---EKIENLLSSLVNLQVLDLSFNKITKLE-----GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred cccccceeeeeccccch---hhcccchhhhhcchheecccccccccc-----chhhccchhhheeccCcch
Confidence 35566777777777777 333333556677777777777777653 3455555777777777765
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=2e-06 Score=47.96 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=28.0
Q ss_pred CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcc
Q 038163 19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60 (207)
Q Consensus 19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 60 (207)
++|++|++++|.| ..+|..+.++++|+.|++++|.+++.
T Consensus 1 ~~L~~L~l~~N~i---~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQI---TDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS----SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCC---cccCchHhCCCCCCEEEecCCCCCCC
Confidence 3677888888888 45676678888888888888877754
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=8.9e-07 Score=68.89 Aligned_cols=181 Identities=21% Similarity=0.225 Sum_probs=102.9
Q ss_pred CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcc-cCCCCccEEEcCCCCCChHHHHh-hcc
Q 038163 17 GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQEL-HNFTNMEYLKLDDSPLHISLLQS-IAS 94 (207)
Q Consensus 17 ~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~-l~~ 94 (207)
....++++|+.+|.|+++.++.....++|.|++|+++.|.++..+- .+ ....+|++|-|.+..+......+ +..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~----~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK----SLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc----cCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 4566778899999998888888888889999999999998875443 44 35677888888888776532221 222
Q ss_pred cc---cc--cCCcccce------ecccc-------cccc--------CCCC-CCCccceecccccccccCchhH-HHHHh
Q 038163 95 IF---PL--LKNLSMIG------CEVNG-------VIRG--------QDFP-HSKSLEHLDMEFMRIALNTSFL-QIISE 146 (207)
Q Consensus 95 l~---~L--~~n~~~~~------~~~~~-------~~~~--------~~~~-~~~~L~~L~l~~~~n~~~~~~~-~~l~~ 146 (207)
++ .+ +.|..... ...+. +... ..+. ..+++..+-+. .|++..... +.. +
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~--e~PlK~~s~ek~s-e 221 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVC--EGPLKTESSEKGS-E 221 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeee--cCcccchhhcccC-C
Confidence 22 22 33322110 00000 0000 0000 12333333333 333321111 112 2
Q ss_pred cCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccc------cccCCCCCccCC
Q 038163 147 SMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPW------CMANMTSLRILD 207 (207)
Q Consensus 147 ~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~------~~~~l~~L~~l~ 207 (207)
.++.+..|+++.+++..+..+ .++.+++.|..|.+..+.+.+.+.. .+++++++++|+
T Consensus 222 ~~p~~~~LnL~~~~idswasv---D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASV---DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCCcchhhhhcccccccHHHH---HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 456666777777777644444 3688888999999988887643321 246677776654
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.8e-07 Score=71.67 Aligned_cols=171 Identities=22% Similarity=0.210 Sum_probs=111.0
Q ss_pred CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCC-CChHH----HHhhcc
Q 038163 20 KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSP-LHISL----LQSIAS 94 (207)
Q Consensus 20 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~----~~~l~~ 94 (207)
.++.||+|...|. ...+...+..+.+|+.|.+.++.+.+.+. ..+.+-..|+.|+++.+. ++... ......
T Consensus 186 Rlq~lDLS~s~it-~stl~~iLs~C~kLk~lSlEg~~LdD~I~---~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVIT-VSTLHGILSQCSKLKNLSLEGLRLDDPIV---NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhhee-HHHHHHHHHHHHhhhhccccccccCcHHH---HHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 3778899988883 24466677888999999999998887766 678888889999998875 44322 222333
Q ss_pred cccc--cCCcccceeccccccccCCCCCC-Cccceecccccccc--cCchhHHHHHhcCCCccEEEccCCccCcccccch
Q 038163 95 IFPL--LKNLSMIGCEVNGVIRGQDFPHS-KSLEHLDMEFMRIA--LNTSFLQIISESMSSLKYLSLSYYTLGINSSETL 169 (207)
Q Consensus 95 l~~L--~~n~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~n~--~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~ 169 (207)
+.+| +.+......... ...+. ..|..|+++ |+. +.....+.+...+|+|.+|+++.|..-.+ .. .
T Consensus 262 L~~LNlsWc~l~~~~Vtv------~V~hise~l~~LNls--G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~-~ 331 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTV------AVAHISETLTQLNLS--GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DC-F 331 (419)
T ss_pred HhhcCchHhhccchhhhH------HHhhhchhhhhhhhh--hhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hH-H
Confidence 3333 222221111110 22232 478889999 653 33344445444899999999998754422 22 2
Q ss_pred hhhhcCCCCCceEEecCCcCCCCcccc---ccCCCCCccCC
Q 038163 170 NQGLCSLVHLQELYIASNDLRGSLPWC---MANMTSLRILD 207 (207)
Q Consensus 170 ~~~~~~~~~L~~L~l~~n~l~~~~p~~---~~~l~~L~~l~ 207 (207)
.++.+++.|++|.+++|... +|.. +...|+|..||
T Consensus 332 -~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 332 -QEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLD 369 (419)
T ss_pred -HHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEE
Confidence 37888999999999999864 4543 45667766654
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=7.3e-07 Score=69.35 Aligned_cols=162 Identities=17% Similarity=0.120 Sum_probs=99.0
Q ss_pred ccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCCh-----H
Q 038163 13 QGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHI-----S 87 (207)
Q Consensus 13 ~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~ 87 (207)
.++.+++.+++|+++.|+++ ..+...-..+.+|+.|.|.+..+...... ..+..++.++.|.++.|.... .
T Consensus 91 ~ile~lP~l~~LNls~N~L~--s~I~~lp~p~~nl~~lVLNgT~L~w~~~~--s~l~~lP~vtelHmS~N~~rq~n~Dd~ 166 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLS--SDIKSLPLPLKNLRVLVLNGTGLSWTQST--SSLDDLPKVTELHMSDNSLRQLNLDDN 166 (418)
T ss_pred HHHhcCccceEeeccCCcCC--CccccCcccccceEEEEEcCCCCChhhhh--hhhhcchhhhhhhhccchhhhhccccc
Confidence 34678999999999999983 22221113567899999999887754331 456678888999888884321 0
Q ss_pred H----HHhhcccccc--------cCCcccceecccc-----------ccccCCCCCCCccceecccccccccC-chhHHH
Q 038163 88 L----LQSIASIFPL--------LKNLSMIGCEVNG-----------VIRGQDFPHSKSLEHLDMEFMRIALN-TSFLQI 143 (207)
Q Consensus 88 ~----~~~l~~l~~L--------~~n~~~~~~~~~~-----------~~~~~~~~~~~~L~~L~l~~~~n~~~-~~~~~~ 143 (207)
- ...+..++.+ .-|++...+|..- ...-+.+..++.+..|+++ .+++. +.....
T Consensus 167 c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~--~~~idswasvD~ 244 (418)
T KOG2982|consen 167 CIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLG--ANNIDSWASVDA 244 (418)
T ss_pred cccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhc--ccccccHHHHHH
Confidence 0 0011111111 2233332233210 1111245567778889999 88885 344567
Q ss_pred HHhcCCCccEEEccCCccCcccccchh-----hhhcCCCCCceEEe
Q 038163 144 ISESMSSLKYLSLSYYTLGINSSETLN-----QGLCSLVHLQELYI 184 (207)
Q Consensus 144 l~~~~~~L~~L~l~~n~~~~~~~i~~~-----~~~~~~~~L~~L~l 184 (207)
+. .++.|..|.++++.+. +.+ .. -.++.+++++.|+=
T Consensus 245 Ln-~f~~l~dlRv~~~Pl~--d~l-~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 245 LN-GFPQLVDLRVSENPLS--DPL-RGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred Hc-CCchhheeeccCCccc--ccc-cCCcceEEEEeeccceEEecC
Confidence 77 8999999999999887 433 11 03556777777653
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.06 E-value=3.6e-06 Score=75.73 Aligned_cols=124 Identities=20% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCCCCcEEecCCCc--ccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163 17 GLRKLKSLDLSGVG--VRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS 94 (207)
Q Consensus 17 ~l~~L~~L~ls~n~--i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 94 (207)
..++|++|-+..|. + .....+.|..++.|+.||+++|.--..+| ..++.+.+||+|+++++.+. .+|.++.+
T Consensus 543 ~~~~L~tLll~~n~~~l--~~is~~ff~~m~~LrVLDLs~~~~l~~LP---~~I~~Li~LryL~L~~t~I~-~LP~~l~~ 616 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWL--LEISGEFFRSLPLLRVLDLSGNSSLSKLP---SSIGELVHLRYLDLSDTGIS-HLPSGLGN 616 (889)
T ss_pred CCCccceEEEeecchhh--hhcCHHHHhhCcceEEEECCCCCccCcCC---hHHhhhhhhhcccccCCCcc-ccchHHHH
Confidence 34467787777775 4 23333457778999999999887767788 78888899999999998887 66777766
Q ss_pred cccc-----cCCcccceeccccccccCCCCCCCccceecccccccc--cCchhHHHHHhcCCCccEEEc
Q 038163 95 IFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA--LNTSFLQIISESMSSLKYLSL 156 (207)
Q Consensus 95 l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~--~~~~~~~~l~~~~~~L~~L~l 156 (207)
|..| ..+......+. ....+.+|++|.+. .-. .+......+. .+..|+.+..
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~-------i~~~L~~Lr~L~l~--~s~~~~~~~~l~el~-~Le~L~~ls~ 675 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPG-------ILLELQSLRVLRLP--RSALSNDKLLLKELE-NLEHLENLSI 675 (889)
T ss_pred HHhhheeccccccccccccc-------hhhhcccccEEEee--ccccccchhhHHhhh-cccchhhhee
Confidence 6665 11111111222 44457777777776 433 2222233343 4445555444
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.06 E-value=3.5e-06 Score=73.95 Aligned_cols=64 Identities=27% Similarity=0.412 Sum_probs=41.4
Q ss_pred CCCcEEecCCCcccCCCcchhhhcC-CCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163 19 RKLKSLDLSGVGVRDGSKLLQSIGS-FSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 19 ~~L~~L~ls~n~i~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
.+|+.|++++...- ...-|..++. +|.|+.|.+++-.+....-. +-..++++|..||+|++.++
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~--~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFS--QLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHH--HHhhccCccceeecCCCCcc
Confidence 45777888776652 1233334443 68888888887766543210 34457888888888888876
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.01 E-value=7.9e-07 Score=73.96 Aligned_cols=149 Identities=24% Similarity=0.231 Sum_probs=103.1
Q ss_pred CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCCh-HHHHhhccc
Q 038163 17 GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHI-SLLQSIASI 95 (207)
Q Consensus 17 ~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l 95 (207)
.+..++.+++..|.+ ..+-..+..+.+|..|++.+|.+..... .+..+++|++|++++|.|.. .....+..+
T Consensus 70 ~l~~l~~l~l~~n~i---~~~~~~l~~~~~l~~l~l~~n~i~~i~~----~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLI---AKILNHLSKLKSLEALDLYDNKIEKIEN----LLSSLVNLQVLDLSFNKITKLEGLSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhh---hhhhcccccccceeeeeccccchhhccc----chhhhhcchheeccccccccccchhhccch
Confidence 356666777888888 3344457788999999999999987532 27889999999999999873 234444445
Q ss_pred ccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhh
Q 038163 96 FPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGL 173 (207)
Q Consensus 96 ~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~ 173 (207)
..| .+|.+... . .+..+..|+.++++ +|.+......... .+.+++.+.++.|.+. .+ . .+
T Consensus 143 ~~L~l~~N~i~~~-~--------~~~~l~~L~~l~l~--~n~i~~ie~~~~~-~~~~l~~l~l~~n~i~---~i-~--~~ 204 (414)
T KOG0531|consen 143 KELNLSGNLISDI-S--------GLESLKSLKLLDLS--YNRIVDIENDELS-ELISLEELDLGGNSIR---EI-E--GL 204 (414)
T ss_pred hhheeccCcchhc-c--------CCccchhhhcccCC--cchhhhhhhhhhh-hccchHHHhccCCchh---cc-c--ch
Confidence 555 66666542 1 56667888888888 8887643331134 6778888888888887 54 2 34
Q ss_pred cCCCCCceEEecCCcCC
Q 038163 174 CSLVHLQELYIASNDLR 190 (207)
Q Consensus 174 ~~~~~L~~L~l~~n~l~ 190 (207)
..+..+..+++..|++.
T Consensus 205 ~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 205 DLLKKLVLLSLLDNKIS 221 (414)
T ss_pred HHHHHHHHhhcccccce
Confidence 44555555677777765
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=1e-06 Score=61.06 Aligned_cols=111 Identities=18% Similarity=0.209 Sum_probs=71.9
Q ss_pred CCCcEEecCCCcccCCCcchhhh---cCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163 19 RKLKSLDLSGVGVRDGSKLLQSI---GSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI 95 (207)
Q Consensus 19 ~~L~~L~ls~n~i~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 95 (207)
..+..++|+.|.+ ..+++.+ .....|+..++++|.+....+ ....+++.+.++++++|.++
T Consensus 27 kE~h~ldLssc~l---m~i~davy~l~~~~el~~i~ls~N~fk~fp~---kft~kf~t~t~lNl~~neis---------- 90 (177)
T KOG4579|consen 27 KELHFLDLSSCQL---MYIADAVYMLSKGYELTKISLSDNGFKKFPK---KFTIKFPTATTLNLANNEIS---------- 90 (177)
T ss_pred HHhhhcccccchh---hHHHHHHHHHhCCceEEEEecccchhhhCCH---HHhhccchhhhhhcchhhhh----------
Confidence 3455677777776 4444433 344556666778887776444 33345667777777777776
Q ss_pred ccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchh
Q 038163 96 FPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN 170 (207)
Q Consensus 96 ~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~ 170 (207)
.+|. .+..++.|+.|++. .|++. ..|+.+. .+.++..|+..+|... +| +.
T Consensus 91 ----------dvPe-------E~Aam~aLr~lNl~--~N~l~-~~p~vi~-~L~~l~~Lds~~na~~---ei-d~ 140 (177)
T KOG4579|consen 91 ----------DVPE-------ELAAMPALRSLNLR--FNPLN-AEPRVIA-PLIKLDMLDSPENARA---EI-DV 140 (177)
T ss_pred ----------hchH-------HHhhhHHhhhcccc--cCccc-cchHHHH-HHHhHHHhcCCCCccc---cC-cH
Confidence 2344 56667778888888 88776 5566666 5677777777777776 66 55
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.8e-05 Score=44.07 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163 149 SSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 149 ~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~ 191 (207)
++|++|++++|.++ ++ +. .++.+++|+.|++++|++.+
T Consensus 1 ~~L~~L~l~~N~i~---~l-~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT---DL-PP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S---SH-GG-HGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc---cc-Cc-hHhCCCCCCEEEecCCCCCC
Confidence 46888888888887 77 65 68888888888888888873
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.87 E-value=1.8e-05 Score=61.07 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=11.1
Q ss_pred cCCCCCcEEecCCCcc
Q 038163 16 NGLRKLKSLDLSGVGV 31 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i 31 (207)
..+..++++++|+|.|
T Consensus 27 ~~~d~~~evdLSGNti 42 (388)
T COG5238 27 EMMDELVEVDLSGNTI 42 (388)
T ss_pred HhhcceeEEeccCCcc
Confidence 4466677777777776
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.70 E-value=8.2e-06 Score=70.52 Aligned_cols=79 Identities=25% Similarity=0.291 Sum_probs=53.0
Q ss_pred CCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163 117 DFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC 196 (207)
Q Consensus 117 ~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 196 (207)
.+.-++.+++|+|+ .|+++. ...+. .++.|++|++++|.+. .+ |.....+++ |+.|.+++|.+... ..
T Consensus 182 SLqll~ale~LnLs--hNk~~~--v~~Lr-~l~~LkhLDlsyN~L~---~v-p~l~~~gc~-L~~L~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 182 SLQLLPALESLNLS--HNKFTK--VDNLR-RLPKLKHLDLSYNCLR---HV-PQLSMVGCK-LQLLNLRNNALTTL--RG 249 (1096)
T ss_pred HHHHHHHhhhhccc--hhhhhh--hHHHH-hcccccccccccchhc---cc-cccchhhhh-heeeeecccHHHhh--hh
Confidence 45556788888888 888874 34667 7888888888888887 66 542233344 77777777777632 33
Q ss_pred ccCCCCCccCC
Q 038163 197 MANMTSLRILD 207 (207)
Q Consensus 197 ~~~l~~L~~l~ 207 (207)
++++++|+.||
T Consensus 250 ie~LksL~~LD 260 (1096)
T KOG1859|consen 250 IENLKSLYGLD 260 (1096)
T ss_pred HHhhhhhhccc
Confidence 55666666554
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.66 E-value=4.5e-06 Score=57.97 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=28.9
Q ss_pred CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcC
Q 038163 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDL 189 (207)
Q Consensus 122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l 189 (207)
+.++.++++ .|.++ .+|..+. .|+.|+.|+++.|.+. .. |. .+..+.++-.|+..+|.+
T Consensus 77 ~t~t~lNl~--~neis-dvPeE~A-am~aLr~lNl~~N~l~---~~-p~-vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 77 PTATTLNLA--NNEIS-DVPEELA-AMPALRSLNLRFNPLN---AE-PR-VIAPLIKLDMLDSPENAR 135 (177)
T ss_pred chhhhhhcc--hhhhh-hchHHHh-hhHHhhhcccccCccc---cc-hH-HHHHHHhHHHhcCCCCcc
Confidence 345555555 55554 3444444 5555555555555554 33 33 333344444455444443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=8.3e-05 Score=65.51 Aligned_cols=130 Identities=19% Similarity=0.181 Sum_probs=73.7
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCCh-HHHHhhcc
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHI-SLLQSIAS 94 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~ 94 (207)
..+|.|+.|.+++-.+. ...+.....++++|..||+++.+++.. ..++++++||.|.+.+-.+.. .....+..
T Consensus 145 ~~LPsL~sL~i~~~~~~-~~dF~~lc~sFpNL~sLDIS~TnI~nl-----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFD-NDDFSQLCASFPNLRSLDISGTNISNL-----SGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred hhCcccceEEecCceec-chhHHHHhhccCccceeecCCCCccCc-----HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 56788888888887763 233555667788888888888888764 356777788888776666553 22333333
Q ss_pred cccc-----cCCcccc--eeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163 95 IFPL-----LKNLSMI--GCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL 156 (207)
Q Consensus 95 l~~L-----~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l 156 (207)
|+.| +...... .... ..++.-..+|.||+||.+ ++.+++...+.+-+..++|+.+.+
T Consensus 219 L~~L~vLDIS~~~~~~~~~ii~---qYlec~~~LpeLrfLDcS--gTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDDTKIIE---QYLECGMVLPELRFLDCS--GTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred ccCCCeeeccccccccchHHHH---HHHHhcccCccccEEecC--CcchhHHHHHHHHHhCccHhhhhh
Confidence 3333 1100000 0000 001122236677777777 666666555554435555555543
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.50 E-value=0.00024 Score=52.55 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=73.7
Q ss_pred CcEEecCCCcccCCCcchhhhcC-CCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccccccc
Q 038163 21 LKSLDLSGVGVRDGSKLLQSIGS-FSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL 99 (207)
Q Consensus 21 L~~L~ls~n~i~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 99 (207)
-+++++.+.++ ..+.. ++. +.....+|++.|.+-.. ..+..++.|.+|.+++|.|+.
T Consensus 21 e~e~~LR~lki---p~ien-lg~~~d~~d~iDLtdNdl~~l-----~~lp~l~rL~tLll~nNrIt~------------- 78 (233)
T KOG1644|consen 21 ERELDLRGLKI---PVIEN-LGATLDQFDAIDLTDNDLRKL-----DNLPHLPRLHTLLLNNNRITR------------- 78 (233)
T ss_pred ccccccccccc---cchhh-ccccccccceecccccchhhc-----ccCCCccccceEEecCCccee-------------
Confidence 34567777666 11111 222 23566677777776643 356677778888888887761
Q ss_pred CCcccceeccccccccCCCC-CCCccceecccccccccCchh-HHHHHhcCCCccEEEccCCccCcccccchhhhhcCCC
Q 038163 100 KNLSMIGCEVNGVIRGQDFP-HSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLV 177 (207)
Q Consensus 100 ~n~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~ 177 (207)
+.. .+. .++.|..|.+. +|.+.... ...+. .||.|++|.+=+|.+......... .+..++
T Consensus 79 -------I~p-------~L~~~~p~l~~L~Lt--nNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~y-vl~klp 140 (233)
T KOG1644|consen 79 -------IDP-------DLDTFLPNLKTLILT--NNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLY-VLYKLP 140 (233)
T ss_pred -------ecc-------chhhhccccceEEec--Ccchhhhhhcchhc-cCCccceeeecCCchhcccCceeE-EEEecC
Confidence 111 222 23567777777 77664211 23445 677888888777766511111011 355677
Q ss_pred CCceEEecCCcC
Q 038163 178 HLQELYIASNDL 189 (207)
Q Consensus 178 ~L~~L~l~~n~l 189 (207)
+|+.||...-..
T Consensus 141 ~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 141 SLRTLDFQKVTR 152 (233)
T ss_pred cceEeehhhhhH
Confidence 788887765543
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.48 E-value=0.00012 Score=56.57 Aligned_cols=169 Identities=18% Similarity=0.133 Sum_probs=88.9
Q ss_pred ccCCCCCcEEecCCCcccCCCcchh----hhcCCCCCCEEEcCCCcCCccccc----c------hhcccCCCCccEEEcC
Q 038163 15 YNGLRKLKSLDLSGVGVRDGSKLLQ----SIGSFSSLNSLYLSSNNFTETVTI----T------TQELHNFTNMEYLKLD 80 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~----~------~~~l~~l~~L~~L~l~ 80 (207)
+.++++++++++|.|-+ ....|+ .++.-+.|.+|.+++|.+.-.... + ......-+.|++.+..
T Consensus 88 Llkcp~l~~v~LSDNAf--g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 88 LLKCPRLQKVDLSDNAF--GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HhcCCcceeeecccccc--CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 56677777777777777 444443 345566777777777765422110 0 0111234667777777
Q ss_pred CCCCChH----HHHhhc---ccccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhH----HHHHhc
Q 038163 81 DSPLHIS----LLQSIA---SIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL----QIISES 147 (207)
Q Consensus 81 ~~~~~~~----~~~~l~---~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~----~~l~~~ 147 (207)
.|++... ....+. .++.+ .+|.+...-.. -+....+..+.+|+.||+. .|.++.... ..+. .
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~--~L~~~gl~y~~~LevLDlq--DNtft~~gS~~La~al~-~ 240 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVT--MLAFLGLFYSHSLEVLDLQ--DNTFTLEGSRYLADALC-E 240 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhH--HHHHHHHHHhCcceeeecc--ccchhhhhHHHHHHHhc-c
Confidence 7765421 111111 12211 44444321000 0000145567888888888 887774432 3444 6
Q ss_pred CCCccEEEccCCccCcccccc-hhhhhc--CCCCCceEEecCCcCCC
Q 038163 148 MSSLKYLSLSYYTLGINSSET-LNQGLC--SLVHLQELYIASNDLRG 191 (207)
Q Consensus 148 ~~~L~~L~l~~n~~~~~~~i~-~~~~~~--~~~~L~~L~l~~n~l~~ 191 (207)
|+.|++|.+..|.++..|.-. .. .+. ..++|..|-...|...+
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~-~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLR-RFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cchhhhccccchhhccccHHHHHH-HhhhhcCCCccccccchhhhcC
Confidence 777888888888777222110 00 111 24667777777666543
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=0.00015 Score=55.47 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=49.1
Q ss_pred CCCCCCccceeccccccc--ccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc
Q 038163 117 DFPHSKSLEHLDMEFMRI--ALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP 194 (207)
Q Consensus 117 ~~~~~~~L~~L~l~~~~n--~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p 194 (207)
.+..+++|++|.++ .| .+...+.-... .+|+|++++++.|.+.+-..+ + .+..+.+|..|++..|......-
T Consensus 60 ~~P~Lp~LkkL~ls--dn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~lstl-~--pl~~l~nL~~Ldl~n~~~~~l~d 133 (260)
T KOG2739|consen 60 NFPKLPKLKKLELS--DNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKDLSTL-R--PLKELENLKSLDLFNCSVTNLDD 133 (260)
T ss_pred cCCCcchhhhhccc--CCcccccccceehhh-hCCceeEEeecCCcccccccc-c--hhhhhcchhhhhcccCCcccccc
Confidence 45566777777777 77 44433332333 567788888887777622233 1 34556667777777776553111
Q ss_pred ---ccccCCCCCccCC
Q 038163 195 ---WCMANMTSLRILD 207 (207)
Q Consensus 195 ---~~~~~l~~L~~l~ 207 (207)
..|.-+++|+.+|
T Consensus 134 yre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 134 YREKVFLLLPSLKYLD 149 (260)
T ss_pred HHHHHHHHhhhhcccc
Confidence 3355566666554
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.29 E-value=0.0017 Score=44.57 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=31.7
Q ss_pred eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
.++..+|.++.+|+.+.+.. .+ ..-....|..++.|+.+.+..+ +..... ..+..++.++.+.+..
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~--~~I~~~~F~~~~~l~~i~~~~~-~~~i~~---~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TI--KKIGENAFSNCTSLKSINFPNN-LTSIGD---NAFSNCKSLESITFPN 67 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-T---TTTTT-TT-EEEEETS
T ss_pred EECHHHHhCCCCCCEEEECC-Ce--eEeChhhccccccccccccccc-ccccce---eeeecccccccccccc
Confidence 35666777777788877764 34 2222335666667777777654 443322 3455555666666644
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=4.2e-05 Score=59.25 Aligned_cols=82 Identities=22% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc---
Q 038163 118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP--- 194 (207)
Q Consensus 118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p--- 194 (207)
..+++.|+.|.|+ -|+++. .+.+. .|++|++|+|..|.|. .+....-+.++++|+.|+|..|.=++..+
T Consensus 37 c~kMp~lEVLsLS--vNkIss--L~pl~-rCtrLkElYLRkN~I~---sldEL~YLknlpsLr~LWL~ENPCc~~ag~nY 108 (388)
T KOG2123|consen 37 CEKMPLLEVLSLS--VNKISS--LAPLQ-RCTRLKELYLRKNCIE---SLDELEYLKNLPSLRTLWLDENPCCGEAGQNY 108 (388)
T ss_pred HHhcccceeEEee--cccccc--chhHH-HHHHHHHHHHHhcccc---cHHHHHHHhcCchhhhHhhccCCcccccchhH
Confidence 3467889999999 999873 34555 7899999999999987 43111246778999999999998877655
Q ss_pred --ccccCCCCCccCC
Q 038163 195 --WCMANMTSLRILD 207 (207)
Q Consensus 195 --~~~~~l~~L~~l~ 207 (207)
..+..+|+|+.||
T Consensus 109 R~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 109 RRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHcccchhcc
Confidence 3356688888876
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.00 E-value=0.001 Score=49.36 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=44.1
Q ss_pred CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163 19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
.....+|+++|.+.. ..-+..++.|++|.+++|.|+.+.| .--..++.|+.|.+.+|.+.
T Consensus 42 d~~d~iDLtdNdl~~----l~~lp~l~rL~tLll~nNrIt~I~p---~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK----LDNLPHLPRLHTLLLNNNRITRIDP---DLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchhh----cccCCCccccceEEecCCcceeecc---chhhhccccceEEecCcchh
Confidence 356678888888822 2245577888999999999988877 33345677888888888876
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.94 E-value=0.0022 Score=52.98 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=44.9
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI 95 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 95 (207)
..+++++.|++++|.+ ..+|. --.+|+.|.+++|.--...| ..+. ..|++|++++|.....+|..+..|
T Consensus 49 ~~~~~l~~L~Is~c~L---~sLP~---LP~sLtsL~Lsnc~nLtsLP---~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDI---ESLPV---LPNELTEITIENCNNLTTLP---GSIP--EGLEKLTVCHCPEISGLPESVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCC---cccCC---CCCCCcEEEccCCCCcccCC---chhh--hhhhheEccCcccccccccccceE
Confidence 4468899999999988 55662 12469999998765444556 3332 478999998884323455544433
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.87 E-value=0.0044 Score=42.49 Aligned_cols=123 Identities=19% Similarity=0.254 Sum_probs=62.5
Q ss_pred hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCC
Q 038163 40 SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFP 119 (207)
Q Consensus 40 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~ 119 (207)
.|.++.+|+.+.+.. .+..... ..+..+..|+.+.+..+ +. .++.. .+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~---~~F~~~~~l~~i~~~~~-~~--------------------~i~~~------~F~ 55 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGE---NAFSNCTSLKSINFPNN-LT--------------------SIGDN------AFS 55 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-T---TTTTT-TT-SEEEESST-TS--------------------CE-TT------TTT
T ss_pred HHhCCCCCCEEEECC-CeeEeCh---hhccccccccccccccc-cc--------------------cccee------eee
Confidence 567778899999874 4555444 56778888999998775 33 12221 677
Q ss_pred CCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccC
Q 038163 120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMAN 199 (207)
Q Consensus 120 ~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 199 (207)
+++.++.+.+. . .+.......+. .++.++.+.+..+ +. .+ +...+..+ .++.+.+.. .+.......|.+
T Consensus 56 ~~~~l~~i~~~--~-~~~~i~~~~F~-~~~~l~~i~~~~~-~~---~i-~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~ 124 (129)
T PF13306_consen 56 NCKSLESITFP--N-NLKSIGDNAFS-NCTNLKNIDIPSN-IT---EI-GSSSFSNC-NLKEINIPS-NITKIEENAFKN 124 (129)
T ss_dssp T-TT-EEEEET--S-TT-EE-TTTTT-T-TTECEEEETTT--B---EE-HTTTTTT--T--EEE-TT-B-SS----GGG-
T ss_pred ccccccccccc--c-ccccccccccc-ccccccccccCcc-cc---EE-chhhhcCC-CceEEEECC-CccEECCccccc
Confidence 78788888886 5 33212233444 6889999999765 55 56 55467777 899998876 333334477888
Q ss_pred CCCCc
Q 038163 200 MTSLR 204 (207)
Q Consensus 200 l~~L~ 204 (207)
+++|+
T Consensus 125 ~~~l~ 129 (129)
T PF13306_consen 125 CTKLK 129 (129)
T ss_dssp -----
T ss_pred cccCC
Confidence 88775
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00097 Score=51.10 Aligned_cols=66 Identities=29% Similarity=0.313 Sum_probs=31.8
Q ss_pred cCCCCCcEEecCCC--cccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163 16 NGLRKLKSLDLSGV--GVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 16 ~~l~~L~~L~ls~n--~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
-.+++|++|.+|.| .+ ...++..+..+++|++|++++|.+.. +.++..+.++.+|..|++.+|..+
T Consensus 62 P~Lp~LkkL~lsdn~~~~--~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRV--SGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCcchhhhhcccCCcccc--cccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 34555555555555 33 33444444444555555555555542 111123344455555555555433
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00036 Score=54.24 Aligned_cols=101 Identities=22% Similarity=0.235 Sum_probs=61.3
Q ss_pred CCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccccc
Q 038163 18 LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFP 97 (207)
Q Consensus 18 l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 97 (207)
+.+.++|+..++.++| + .....++.|+.|.|+.|.|+.. ..+..|++|++|.|..|.|.+..
T Consensus 18 l~~vkKLNcwg~~L~D---I-sic~kMp~lEVLsLSvNkIssL-----~pl~rCtrLkElYLRkN~I~sld--------- 79 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---I-SICEKMPLLEVLSLSVNKISSL-----APLQRCTRLKELYLRKNCIESLD--------- 79 (388)
T ss_pred HHHhhhhcccCCCccH---H-HHHHhcccceeEEeeccccccc-----hhHHHHHHHHHHHHHhcccccHH---------
Confidence 4556667777777632 1 1234567777777777777754 34566777777777777665210
Q ss_pred ccCCcccceeccccccccCCCCCCCccceecccccccccCchhH-----HHHHhcCCCccEEE
Q 038163 98 LLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL-----QIISESMSSLKYLS 155 (207)
Q Consensus 98 L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~-----~~l~~~~~~L~~L~ 155 (207)
.+. .+.++++|+.|+|. .|+.-+..+ ..+. .+|+|+.|+
T Consensus 80 --------EL~--------YLknlpsLr~LWL~--ENPCc~~ag~nYR~~VLR-~LPnLkKLD 123 (388)
T KOG2123|consen 80 --------ELE--------YLKNLPSLRTLWLD--ENPCCGEAGQNYRRKVLR-VLPNLKKLD 123 (388)
T ss_pred --------HHH--------HHhcCchhhhHhhc--cCCcccccchhHHHHHHH-Hcccchhcc
Confidence 011 45667778888888 776654432 2355 677777775
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.00 E-value=0.0034 Score=29.21 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=12.2
Q ss_pred CCceEEecCCcCCCCccccccC
Q 038163 178 HLQELYIASNDLRGSLPWCMAN 199 (207)
Q Consensus 178 ~L~~L~l~~n~l~~~~p~~~~~ 199 (207)
+|++|++++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 55554543
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.63 E-value=0.0084 Score=27.84 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=9.6
Q ss_pred CcEEecCCCcccCCCcchhhh
Q 038163 21 LKSLDLSGVGVRDGSKLLQSI 41 (207)
Q Consensus 21 L~~L~ls~n~i~~~~~~~~~~ 41 (207)
|++||+++|.+ . .+|..|
T Consensus 2 L~~Ldls~n~l--~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNL--T-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEE--S-EEGTTT
T ss_pred ccEEECCCCcC--E-eCChhh
Confidence 45566666655 2 455444
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.36 E-value=0.017 Score=48.57 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=16.1
Q ss_pred CCCCCEEEcCCCc-CCcc-cccchhcccCCCCccEEEcCC
Q 038163 44 FSSLNSLYLSSNN-FTET-VTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 44 l~~L~~L~l~~n~-~~~~-~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++.|+.|.+.++. +... .- .....++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLD---ALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHH---HHHhhCchhheecccC
Confidence 4555555555442 2211 11 2334555566666654
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.24 E-value=0.013 Score=49.22 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=34.4
Q ss_pred CCCccceecccccccc-cCchhHHHHHhcCCCccEEEccCCc-cCcccccchhhhhcCCCCCceEEecCCcC
Q 038163 120 HSKSLEHLDMEFMRIA-LNTSFLQIISESMSSLKYLSLSYYT-LGINSSETLNQGLCSLVHLQELYIASNDL 189 (207)
Q Consensus 120 ~~~~L~~L~l~~~~n~-~~~~~~~~l~~~~~~L~~L~l~~n~-~~~~~~i~~~~~~~~~~~L~~L~l~~n~l 189 (207)
.+++|+.++++ ++. +++.....+...+++|+.|.+..|. +++ ..+ .. ....+++|++|+++++..
T Consensus 241 ~~~~L~~l~l~--~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~-~gl-~~-i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLS--GCGLVTDIGLSALASRCPNLETLSLSNCSNLTD-EGL-VS-IAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchh--hhhccCchhHHHHHhhCCCcceEccCCCCccch-hHH-HH-HHHhcCcccEEeeecCcc
Confidence 34566666666 554 5544444444345666666655555 341 122 22 444556666666666554
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.014 Score=43.40 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=57.0
Q ss_pred CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhc-CCCCCceEEecCCc-CCCCccccccC
Q 038163 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLC-SLVHLQELYIASND-LRGSLPWCMAN 199 (207)
Q Consensus 122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~-~~~~L~~L~l~~n~-l~~~~p~~~~~ 199 (207)
-.++.+|.+ +..+..+..+.+. .++.++.|.+.+|..- ++. ...-++ -.++|+.|++++|. |++....++.+
T Consensus 101 ~~IeaVDAs--ds~I~~eGle~L~-~l~~i~~l~l~~ck~~--dD~-~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 101 VKIEAVDAS--DSSIMYEGLEHLR-DLRSIKSLSLANCKYF--DDW-CLERLGGLAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred ceEEEEecC--CchHHHHHHHHHh-ccchhhhheeccccch--hhH-HHHHhcccccchheeeccCCCeechhHHHHHHH
Confidence 467889998 8888877788888 8889999999888766 332 211233 35789999999886 44445577777
Q ss_pred CCCCccC
Q 038163 200 MTSLRIL 206 (207)
Q Consensus 200 l~~L~~l 206 (207)
+++|+.|
T Consensus 175 lknLr~L 181 (221)
T KOG3864|consen 175 LKNLRRL 181 (221)
T ss_pred hhhhHHH
Confidence 7877754
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.44 E-value=0.18 Score=42.02 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=68.2
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCC-cCCcccccchhcccCCCCccEEEcC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSN-NFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
++|.+. .+| +. -.+|++|+++++.- ...+|..+. ++|++|++++| .+. .+| . .|+.|++.
T Consensus 60 s~c~L~-sLP-~L---P~sLtsL~Lsnc~n--LtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP---~------sLe~L~L~ 120 (426)
T PRK15386 60 KDCDIE-SLP-VL---PNELTEITIENCNN--LTTLPGSIP--EGLEKLTVCHCPEIS-GLP---E------SVRSLEIK 120 (426)
T ss_pred CCCCCc-ccC-CC---CCCCcEEEccCCCC--cccCCchhh--hhhhheEccCccccc-ccc---c------ccceEEeC
Confidence 445555 455 21 23599999988655 356665543 58999999988 444 345 2 37777777
Q ss_pred CCCCC--hHHHHhhcccccccCCcccceeccccccccCCCC--CCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163 81 DSPLH--ISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFP--HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL 156 (207)
Q Consensus 81 ~~~~~--~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l 156 (207)
.+... ..+|..+..|.--..+.... . .+. -..+|++|++. +|... ..|..+. .+|+.|.+
T Consensus 121 ~n~~~~L~~LPssLk~L~I~~~n~~~~---~-------~lp~~LPsSLk~L~Is--~c~~i-~LP~~LP---~SLk~L~l 184 (426)
T PRK15386 121 GSATDSIKNVPNGLTSLSINSYNPENQ---A-------RIDNLISPSLKTLSLT--GCSNI-ILPEKLP---ESLQSITL 184 (426)
T ss_pred CCCCcccccCcchHhheeccccccccc---c-------ccccccCCcccEEEec--CCCcc-cCccccc---ccCcEEEe
Confidence 65543 23344333222101111100 0 111 12478999998 77654 2333322 37888888
Q ss_pred cCCc
Q 038163 157 SYYT 160 (207)
Q Consensus 157 ~~n~ 160 (207)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 7653
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.64 E-value=0.038 Score=26.05 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=11.4
Q ss_pred CCccEEEcCCCCCChHHHHhh
Q 038163 72 TNMEYLKLDDSPLHISLLQSI 92 (207)
Q Consensus 72 ~~L~~L~l~~~~~~~~~~~~l 92 (207)
++|++|++++|.++...+..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456677777777665554443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=0.062 Score=40.05 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhccc-CCCCccEEEcCCCC-CChHHHH
Q 038163 19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELH-NFTNMEYLKLDDSP-LHISLLQ 90 (207)
Q Consensus 19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~~ 90 (207)
-.++.+|-++..| .....+.+..++.++.|.+.+|.--+.+.. ..++ -.++||.|+++.|. |+.....
T Consensus 101 ~~IeaVDAsds~I--~~eGle~L~~l~~i~~l~l~~ck~~dD~~L--~~l~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 101 VKIEAVDASDSSI--MYEGLEHLRDLRSIKSLSLANCKYFDDWCL--ERLGGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred ceEEEEecCCchH--HHHHHHHHhccchhhhheeccccchhhHHH--HHhcccccchheeeccCCCeechhHHH
Confidence 3477899999999 777888899999999999988854443321 3444 35789999999886 6644433
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.87 E-value=0.088 Score=22.67 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=4.7
Q ss_pred CCcEEecCCCcc
Q 038163 20 KLKSLDLSGVGV 31 (207)
Q Consensus 20 ~L~~L~ls~n~i 31 (207)
+|++|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 345555555554
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.65 E-value=0.16 Score=42.04 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=78.0
Q ss_pred CCCCCcEEecCCCc-ccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhccc-CCCCccEEEcCCCC-CChHHHHhh-
Q 038163 17 GLRKLKSLDLSGVG-VRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELH-NFTNMEYLKLDDSP-LHISLLQSI- 92 (207)
Q Consensus 17 ~l~~L~~L~ls~n~-i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~l- 92 (207)
+...+.++++..+. ++| ..+...-..+..|+.|+.+++..-+..+. ..++ +..+|++|.+..|+ ++......+
T Consensus 266 ~~~~i~~lnl~~c~~lTD-~~~~~i~~~c~~lq~l~~s~~t~~~d~~l--~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~ 342 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTD-EDLWLIACGCHALQVLCYSSCTDITDEVL--WALGQHCHNLQVLELSGCQQFSDRGFTMLG 342 (483)
T ss_pred cChHhhccchhhhccccc-hHHHHHhhhhhHhhhhcccCCCCCchHHH--HHHhcCCCceEEEeccccchhhhhhhhhhh
Confidence 34445556654443 322 12333334567888888877643222111 2333 56788888888886 332222222
Q ss_pred ---cccccc----cCCcccceeccccccccCCCCCCCccceecccccccc-cCchhHHHHH---hcCCCccEEEccCCcc
Q 038163 93 ---ASIFPL----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA-LNTSFLQIIS---ESMSSLKYLSLSYYTL 161 (207)
Q Consensus 93 ---~~l~~L----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~-~~~~~~~~l~---~~~~~L~~L~l~~n~~ 161 (207)
..|+.+ .+....+++.. .-.+++.|+.+.++ -|. +++.....+. ..+..+..+.++++..
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~s-------ls~~C~~lr~lsls--hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLAS-------LSRNCPRLRVLSLS--HCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred cCChhhhhhcccccceehhhhHhh-------hccCCchhccCChh--hhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 122222 11111222222 23456677777776 553 3433222222 1234566667777666
Q ss_pred CcccccchhhhhcCCCCCceEEecCCcC
Q 038163 162 GINSSETLNQGLCSLVHLQELYIASNDL 189 (207)
Q Consensus 162 ~~~~~i~~~~~~~~~~~L~~L~l~~n~l 189 (207)
..+... ..+..+++|+.+++-+++-
T Consensus 414 i~d~~L---e~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 414 ITDATL---EHLSICRNLERIELIDCQD 438 (483)
T ss_pred chHHHH---HHHhhCcccceeeeechhh
Confidence 521121 2456677777777776654
No 76
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.39 E-value=0.064 Score=44.21 Aligned_cols=181 Identities=19% Similarity=0.143 Sum_probs=98.4
Q ss_pred ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCC-cCCcccccchhcccCCCCccEEEcCCCC-CChHHHHhh
Q 038163 15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSN-NFTETVTITTQELHNFTNMEYLKLDDSP-LHISLLQSI 92 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l 92 (207)
+.+.+.++++.+++|.=.....+...-....-+..+++..| .+++..- +..-..+..||.|+.+++. +.......+
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~--~~i~~~c~~lq~l~~s~~t~~~d~~l~aL 315 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL--WLIACGCHALQVLCYSSCTDITDEVLWAL 315 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH--HHHhhhhhHhhhhcccCCCCCchHHHHHH
Confidence 45667788887776542000112222234455666675455 3444321 1233467789999998875 444444444
Q ss_pred c-ccccc-----cCCc-ccceeccccccccCCC-CCCCccceecccccccccC-chhHHHHHhcCCCccEEEccCCccCc
Q 038163 93 A-SIFPL-----LKNL-SMIGCEVNGVIRGQDF-PHSKSLEHLDMEFMRIALN-TSFLQIISESMSSLKYLSLSYYTLGI 163 (207)
Q Consensus 93 ~-~l~~L-----~~n~-~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~n~~~-~~~~~~l~~~~~~L~~L~l~~n~~~~ 163 (207)
+ ...+| ..++ ++..-.. .+ .+++.|+.+++. .+... +.....+...++.|+.+.+++|...+
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft-------~l~rn~~~Le~l~~e--~~~~~~d~tL~sls~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFT-------MLGRNCPHLERLDLE--ECGLITDGTLASLSRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhh-------hhhcCChhhhhhccc--ccceehhhhHhhhccCCchhccCChhhhhhhh
Confidence 2 22333 2211 2211111 22 356889999999 77432 22233333378899999999887653
Q ss_pred ccccc-hhhhhcCCCCCceEEecCCcCCCC-ccccccCCCCCccC
Q 038163 164 NSSET-LNQGLCSLVHLQELYIASNDLRGS-LPWCMANMTSLRIL 206 (207)
Q Consensus 164 ~~~i~-~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l 206 (207)
++.|. ....-.+...+..+.++.++...+ ....+..+++|+.+
T Consensus 387 D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 387 DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred hhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 33220 111224467788899999987653 22555667777653
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.89 E-value=0.45 Score=22.64 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=6.7
Q ss_pred CCCcEEecCCCcc
Q 038163 19 RKLKSLDLSGVGV 31 (207)
Q Consensus 19 ~~L~~L~ls~n~i 31 (207)
++|++|+++.|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3445555555555
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.89 E-value=0.45 Score=22.64 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=6.7
Q ss_pred CCCcEEecCCCcc
Q 038163 19 RKLKSLDLSGVGV 31 (207)
Q Consensus 19 ~~L~~L~ls~n~i 31 (207)
++|++|+++.|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3445555555555
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.68 E-value=0.63 Score=22.79 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=14.5
Q ss_pred CCccEEEcCCCCCChHHHHhh
Q 038163 72 TNMEYLKLDDSPLHISLLQSI 92 (207)
Q Consensus 72 ~~L~~L~l~~~~~~~~~~~~l 92 (207)
+.|++|+|++|.+..+....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 457888888888876655444
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.38 E-value=0.016 Score=49.20 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=8.5
Q ss_pred cCCCCCceEEecCCcCC
Q 038163 174 CSLVHLQELYIASNDLR 190 (207)
Q Consensus 174 ~~~~~L~~L~l~~n~l~ 190 (207)
..+..++++.++.|.+.
T Consensus 287 ~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 287 VSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhHHHHHhhcccCccc
Confidence 33445555555555544
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.41 E-value=0.026 Score=43.12 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=56.9
Q ss_pred hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccc----cCCcccceecccccccc
Q 038163 40 SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL----LKNLSMIGCEVNGVIRG 115 (207)
Q Consensus 40 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~n~~~~~~~~~~~~~~ 115 (207)
.+..+...+.||++.|.+.... ..++.++.+..||++-|.+. ..+.+.+....+ .+++.....|.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~----~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~------ 105 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLG----KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPK------ 105 (326)
T ss_pred hhhccceeeeehhhhhHHHhhc----cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCc------
Confidence 4555677777888777655432 25556677778888877765 445555555544 44555555777
Q ss_pred CCCCCCCccceecccccccccC
Q 038163 116 QDFPHSKSLEHLDMEFMRIALN 137 (207)
Q Consensus 116 ~~~~~~~~L~~L~l~~~~n~~~ 137 (207)
.+...+++++++.- ++.+.
T Consensus 106 -s~~k~~~~k~~e~k--~~~~~ 124 (326)
T KOG0473|consen 106 -SQKKEPHPKKNEQK--KTEFF 124 (326)
T ss_pred -cccccCCcchhhhc--cCcch
Confidence 88889999999988 77765
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.49 E-value=1.8 Score=20.60 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=12.0
Q ss_pred CCccEEEcCCCC-CChHHHHh
Q 038163 72 TNMEYLKLDDSP-LHISLLQS 91 (207)
Q Consensus 72 ~~L~~L~l~~~~-~~~~~~~~ 91 (207)
++|++|++++|. +++.....
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 567777777764 55544433
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.88 E-value=1.6 Score=21.03 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=7.9
Q ss_pred CCCcEEecCCCcc
Q 038163 19 RKLKSLDLSGVGV 31 (207)
Q Consensus 19 ~~L~~L~ls~n~i 31 (207)
.+|+.|++++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4556666666666
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=76.60 E-value=0.17 Score=43.03 Aligned_cols=70 Identities=24% Similarity=0.220 Sum_probs=39.7
Q ss_pred cccCCCCCcEEecCCCcccCCCcc----hhhhcCC-CCCCEEEcCCCcCCccccc-chhcccCCCCccEEEcCCCCCC
Q 038163 14 GYNGLRKLKSLDLSGVGVRDGSKL----LQSIGSF-SSLNSLYLSSNNFTETVTI-TTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 14 ~~~~l~~L~~L~ls~n~i~~~~~~----~~~~~~l-~~L~~L~l~~n~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
++..+.+|+.|+++.|.+ .... .+.+... ..+++|++..|.++..... ....+.....++.++++.|.+.
T Consensus 110 ~l~t~~~L~~L~l~~n~l--~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNL--GDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HhcccccHhHhhcccCCC--ccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 345667788888888888 3221 1222222 4466677777766643220 0033445666777777777764
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=76.60 E-value=2.1 Score=36.87 Aligned_cols=67 Identities=25% Similarity=0.260 Sum_probs=44.3
Q ss_pred CCCccceecccccccccCchh-HHHHHhcCCCccEEEccCC--ccCcccccchhhhhcCC--CCCceEEecCCcCCCCcc
Q 038163 120 HSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYY--TLGINSSETLNQGLCSL--VHLQELYIASNDLRGSLP 194 (207)
Q Consensus 120 ~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n--~~~~~~~i~~~~~~~~~--~~L~~L~l~~n~l~~~~p 194 (207)
+.+.+..++++ .|++.... ...+...+|+|..|+|++| .+. .. . ++.++ .-|++|.+.+|++++...
T Consensus 216 n~p~i~sl~ls--nNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~---~-el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 216 NFPEILSLSLS--NNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SE---S-ELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred CCcceeeeecc--cchhhchhhhhHHHHhcchhheeecccchhhhc--ch---h-hhhhhcCCCHHHeeecCCccccchh
Confidence 45667778888 88765321 2334447889999999999 444 11 1 33333 447899999999986543
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.53 E-value=3.5 Score=35.57 Aligned_cols=66 Identities=26% Similarity=0.253 Sum_probs=45.2
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCC--cCCcccccchhcccC--CCCccEEEcCCCCCCh
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSN--NFTETVTITTQELHN--FTNMEYLKLDDSPLHI 86 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~ 86 (207)
.+.+.+..+++++|++.+...+.......|+|+.|+|++| .+... .++.+ ...|++|-+.+|++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-----~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-----SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-----hhhhhhcCCCHHHeeecCCcccc
Confidence 3456777889999998544445554555789999999998 33322 24443 3458889899998763
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.92 E-value=4.6 Score=19.52 Aligned_cols=13 Identities=46% Similarity=0.404 Sum_probs=7.0
Q ss_pred CccEEEccCCccC
Q 038163 150 SLKYLSLSYYTLG 162 (207)
Q Consensus 150 ~L~~L~l~~n~~~ 162 (207)
+|+.|++++|.++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3555555555554
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=64.90 E-value=0.2 Score=38.47 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=36.4
Q ss_pred CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChH
Q 038163 21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHIS 87 (207)
Q Consensus 21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 87 (207)
++.|+++.|.+ ...|+-++++..++.++++.|+.+. .| -+..+.++++++++-.+.+...
T Consensus 67 ~~rl~~sknq~---~~~~~d~~q~~e~~~~~~~~n~~~~-~p---~s~~k~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 67 LVRLDLSKNQI---KFLPKDAKQQRETVNAASHKNNHSQ-QP---KSQKKEPHPKKNEQKKTEFFRK 126 (326)
T ss_pred HHHHhccHhhH---hhChhhHHHHHHHHHHHhhccchhh-CC---ccccccCCcchhhhccCcchHH
Confidence 33344444444 3455555556666666666666553 45 5667778888888877776543
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=46.64 E-value=13 Score=38.39 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=28.2
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCccc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVR 32 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~ 32 (207)
|++|+|. .+|+..|..+++|++|+|++|.+.
T Consensus 2 LSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 6889999 689999999999999999999983
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.49 E-value=59 Score=34.14 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=25.3
Q ss_pred ecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCC
Q 038163 25 DLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFT 58 (207)
Q Consensus 25 ~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~ 58 (207)
||++|.| ...-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~L--stLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKI--STIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcC--CccChHHhccCCCceEEEeeCCccc
Confidence 5889999 4444557888999999999998764
Done!