Query 038163
Match_columns 207
No_of_seqs 114 out of 1897
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 13:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 3E-24 1E-28 188.7 12.3 194 1-207 449-710 (768)
2 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-24 4.4E-29 172.5 5.7 180 4-205 87-272 (313)
3 3rgz_A Protein brassinosteroid 99.9 1E-23 3.5E-28 185.4 12.1 187 2-207 426-686 (768)
4 1ogq_A PGIP-2, polygalacturona 99.9 3.1E-24 1.1E-28 170.2 6.9 185 1-207 108-297 (313)
5 1ozn_A Reticulon 4 receptor; N 99.9 5.3E-23 1.8E-27 160.8 12.8 187 1-207 39-231 (285)
6 4fcg_A Uncharacterized protein 99.9 5.6E-24 1.9E-28 169.8 6.7 169 16-206 124-306 (328)
7 4fcg_A Uncharacterized protein 99.9 1.3E-23 4.5E-28 167.7 5.9 182 1-207 88-283 (328)
8 3v47_A TOLL-like receptor 5B a 99.9 1.2E-21 4.2E-26 162.1 12.4 79 2-86 38-117 (455)
9 2z62_A TOLL-like receptor 4, v 99.9 1.6E-21 5.5E-26 151.7 10.9 186 1-207 35-230 (276)
10 2o6q_A Variable lymphocyte rec 99.9 5E-21 1.7E-25 148.6 13.5 182 2-206 24-210 (270)
11 2z66_A Variable lymphocyte rec 99.9 6.6E-22 2.3E-26 156.0 8.6 192 1-207 35-254 (306)
12 1ozn_A Reticulon 4 receptor; N 99.9 3.9E-21 1.3E-25 150.2 12.0 182 3-207 20-207 (285)
13 3v47_A TOLL-like receptor 5B a 99.9 4E-21 1.4E-25 159.1 12.4 82 118-206 295-376 (455)
14 3zyi_A Leucine-rich repeat-con 99.9 9.6E-21 3.3E-25 157.1 14.6 194 1-207 82-296 (452)
15 3zyj_A Leucine-rich repeat-con 99.8 7E-21 2.4E-25 157.4 12.9 194 1-207 71-285 (440)
16 2id5_A Lingo-1, leucine rich r 99.8 1.6E-20 5.6E-25 156.5 14.2 168 1-188 39-211 (477)
17 2z66_A Variable lymphocyte rec 99.8 3.7E-21 1.3E-25 151.7 9.8 171 1-192 85-263 (306)
18 3zyj_A Leucine-rich repeat-con 99.8 1.3E-20 4.4E-25 155.8 13.1 169 1-191 95-293 (440)
19 2id5_A Lingo-1, leucine rich r 99.8 1.2E-20 4.2E-25 157.2 11.7 187 1-207 63-302 (477)
20 1wwl_A Monocyte differentiatio 99.8 1.3E-21 4.5E-26 155.0 4.8 183 1-207 102-302 (312)
21 4eco_A Uncharacterized protein 99.8 3.9E-22 1.3E-26 172.0 1.8 181 3-206 192-407 (636)
22 3t6q_A CD180 antigen; protein- 99.8 1.7E-20 6E-25 160.4 11.8 186 1-206 261-481 (606)
23 3t6q_A CD180 antigen; protein- 99.8 1.7E-20 5.8E-25 160.5 11.7 183 2-203 333-526 (606)
24 2o6q_A Variable lymphocyte rec 99.8 6.6E-20 2.2E-24 142.3 13.8 172 1-192 44-220 (270)
25 2z80_A TOLL-like receptor 2, v 99.8 4.7E-21 1.6E-25 154.1 7.5 171 1-191 59-236 (353)
26 4eco_A Uncharacterized protein 99.8 2.9E-21 1E-25 166.5 6.6 183 1-207 213-439 (636)
27 2z80_A TOLL-like receptor 2, v 99.8 3.9E-20 1.3E-24 148.7 12.5 189 1-207 83-307 (353)
28 3m19_A Variable lymphocyte rec 99.8 9.5E-20 3.3E-24 139.9 13.7 168 2-192 22-194 (251)
29 3o6n_A APL1; leucine-rich repe 99.8 4.1E-20 1.4E-24 150.4 11.8 80 118-206 244-323 (390)
30 3rfs_A Internalin B, repeat mo 99.8 5.4E-20 1.8E-24 143.0 11.2 159 15-194 59-222 (272)
31 1p9a_G Platelet glycoprotein I 99.8 1.1E-19 3.7E-24 142.7 12.9 178 2-206 18-200 (290)
32 1xku_A Decorin; proteoglycan, 99.8 1.2E-19 4.2E-24 144.5 13.1 56 1-59 59-114 (330)
33 3oja_B Anopheles plasmodium-re 99.8 5.4E-20 1.8E-24 157.6 11.7 80 118-206 250-329 (597)
34 4ecn_A Leucine-rich repeat pro 99.8 3.3E-21 1.1E-25 170.7 4.2 174 4-201 435-642 (876)
35 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-19 4.2E-24 144.6 12.0 186 1-198 61-285 (332)
36 3o6n_A APL1; leucine-rich repe 99.8 7.7E-20 2.6E-24 148.8 10.3 189 2-206 77-300 (390)
37 3rfs_A Internalin B, repeat mo 99.8 3.7E-19 1.3E-23 138.2 13.6 179 3-207 28-211 (272)
38 3vq2_A TLR4, TOLL-like recepto 99.8 5.8E-20 2E-24 157.2 9.6 185 2-206 358-550 (606)
39 2ft3_A Biglycan; proteoglycan, 99.8 3.7E-19 1.3E-23 141.8 13.5 188 1-207 85-326 (332)
40 3oja_B Anopheles plasmodium-re 99.8 1.1E-19 3.6E-24 155.7 11.1 189 2-206 83-306 (597)
41 4ecn_A Leucine-rich repeat pro 99.8 6.3E-20 2.1E-24 162.5 8.5 162 9-195 480-662 (876)
42 3m19_A Variable lymphocyte rec 99.8 8.3E-19 2.8E-23 134.7 13.7 146 1-162 42-192 (251)
43 3oja_A Leucine-rich immune mol 99.8 5.7E-20 1.9E-24 153.9 7.6 184 1-207 41-243 (487)
44 2ast_B S-phase kinase-associat 99.8 3E-19 1E-23 142.3 11.4 186 1-207 77-278 (336)
45 1ziw_A TOLL-like receptor 3; i 99.8 3.7E-19 1.3E-23 154.2 12.9 184 2-205 389-588 (680)
46 1ziw_A TOLL-like receptor 3; i 99.8 1.7E-19 5.7E-24 156.3 10.5 194 1-206 412-614 (680)
47 2xwt_C Thyrotropin receptor; s 99.8 7.7E-20 2.6E-24 139.4 7.3 182 1-204 38-232 (239)
48 3vq2_A TLR4, TOLL-like recepto 99.8 7.7E-20 2.6E-24 156.4 7.6 175 15-207 346-527 (606)
49 2z81_A CD282 antigen, TOLL-lik 99.8 2.9E-19 1E-23 151.1 10.6 172 1-191 33-210 (549)
50 4glp_A Monocyte differentiatio 99.8 6.5E-20 2.2E-24 145.0 6.0 184 1-207 98-300 (310)
51 1xku_A Decorin; proteoglycan, 99.8 9E-19 3.1E-23 139.5 12.5 173 1-197 83-283 (330)
52 3zyi_A Leucine-rich repeat-con 99.8 6E-19 2E-23 146.3 12.0 186 4-207 64-272 (452)
53 3o53_A Protein LRIM1, AGAP0063 99.8 1E-19 3.5E-24 144.3 6.8 184 1-207 41-243 (317)
54 2z7x_B TOLL-like receptor 1, v 99.8 2.1E-19 7.1E-24 151.2 9.0 80 120-206 322-404 (520)
55 1wwl_A Monocyte differentiatio 99.8 6.3E-20 2.2E-24 145.3 5.4 170 17-206 93-279 (312)
56 2z62_A TOLL-like receptor 4, v 99.8 7.4E-19 2.5E-23 136.6 10.3 173 1-194 59-241 (276)
57 1p9a_G Platelet glycoprotein I 99.8 1.6E-18 5.6E-23 135.9 12.1 167 1-191 38-209 (290)
58 2z63_A TOLL-like receptor 4, v 99.8 2.1E-19 7.2E-24 152.5 7.0 173 16-206 344-523 (570)
59 3j0a_A TOLL-like receptor 5; m 99.8 3.2E-19 1.1E-23 158.3 8.4 78 3-85 57-136 (844)
60 2z81_A CD282 antigen, TOLL-lik 99.8 5.5E-19 1.9E-23 149.4 9.0 181 2-206 13-201 (549)
61 2z7x_B TOLL-like receptor 1, v 99.8 2.2E-18 7.4E-23 145.0 11.5 146 42-207 321-474 (520)
62 1h6u_A Internalin H; cell adhe 99.8 9.9E-18 3.4E-22 132.5 14.6 170 1-206 48-222 (308)
63 3oja_A Leucine-rich immune mol 99.8 1.1E-18 3.8E-23 146.1 9.4 179 1-206 65-267 (487)
64 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.3E-19 2.2E-23 149.8 7.8 83 119-206 350-433 (562)
65 2o6s_A Variable lymphocyte rec 99.8 2.6E-18 8.8E-23 128.2 9.5 169 3-201 16-189 (208)
66 2z63_A TOLL-like receptor 4, v 99.8 2.1E-18 7.3E-23 146.3 9.4 166 1-187 35-210 (570)
67 2v9t_B SLIT homolog 2 protein 99.8 1E-17 3.4E-22 126.3 12.1 148 2-191 19-166 (220)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.7E-18 5.9E-23 147.1 8.6 89 1-98 59-148 (562)
69 3o53_A Protein LRIM1, AGAP0063 99.8 2.7E-18 9.4E-23 136.1 9.2 179 1-206 65-267 (317)
70 4fmz_A Internalin; leucine ric 99.7 3.4E-17 1.2E-21 131.0 14.5 167 15-207 151-339 (347)
71 2ca6_A RAN GTPase-activating p 99.7 1.1E-18 3.7E-23 141.9 5.3 84 117-207 211-309 (386)
72 3e6j_A Variable lymphocyte rec 99.7 4.5E-17 1.5E-21 123.5 13.6 148 3-193 28-175 (229)
73 2v70_A SLIT-2, SLIT homolog 2 99.7 2.3E-17 8E-22 124.3 11.6 150 1-192 18-168 (220)
74 3j0a_A TOLL-like receptor 5; m 99.7 5.3E-18 1.8E-22 150.5 9.3 188 1-207 104-368 (844)
75 4ezg_A Putative uncharacterize 99.7 3.1E-17 1E-21 121.5 11.9 146 16-207 41-187 (197)
76 2xot_A Amphoterin-induced prot 99.7 2E-17 6.7E-22 133.5 11.0 166 2-190 26-202 (361)
77 4g8a_A TOLL-like receptor 4; l 99.7 1.6E-17 5.4E-22 142.2 11.1 161 9-191 45-215 (635)
78 2ast_B S-phase kinase-associat 99.7 2.8E-18 9.4E-23 136.7 5.9 175 14-207 63-253 (336)
79 1h6t_A Internalin B; cell adhe 99.7 5.8E-17 2E-21 127.1 12.9 156 2-191 54-214 (291)
80 2xwt_C Thyrotropin receptor; s 99.7 3.8E-18 1.3E-22 129.9 5.5 173 9-207 25-211 (239)
81 4ay9_X Follicle-stimulating ho 99.7 6.3E-18 2.1E-22 135.8 6.9 185 1-206 37-231 (350)
82 1h6t_A Internalin B; cell adhe 99.7 7.1E-17 2.4E-21 126.6 12.6 169 3-207 33-206 (291)
83 3e6j_A Variable lymphocyte rec 99.7 4.6E-17 1.6E-21 123.4 11.1 146 20-207 20-165 (229)
84 2v9t_B SLIT homolog 2 protein 99.7 6.8E-17 2.3E-21 121.8 11.1 146 21-207 13-158 (220)
85 1h6u_A Internalin H; cell adhe 99.7 1.7E-16 5.8E-21 125.4 13.6 169 3-207 28-201 (308)
86 1m9s_A Internalin B; cell inva 99.7 1.7E-16 5.7E-21 136.0 13.9 158 1-192 50-212 (605)
87 3goz_A Leucine-rich repeat-con 99.7 7E-18 2.4E-22 136.1 5.1 195 1-206 5-258 (362)
88 4fmz_A Internalin; leucine ric 99.7 5.1E-16 1.7E-20 124.1 15.6 178 2-206 52-248 (347)
89 4ezg_A Putative uncharacterize 99.7 9.3E-17 3.2E-21 118.9 10.4 143 2-191 52-195 (197)
90 2o6s_A Variable lymphocyte rec 99.7 5.8E-17 2E-21 120.8 9.3 151 1-178 35-190 (208)
91 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-16 4.1E-21 120.4 11.1 147 21-207 13-159 (220)
92 3goz_A Leucine-rich repeat-con 99.7 8.1E-18 2.8E-22 135.7 4.5 82 120-207 193-290 (362)
93 4g8a_A TOLL-like receptor 4; l 99.7 3.4E-17 1.2E-21 140.1 8.6 170 1-190 59-237 (635)
94 2ca6_A RAN GTPase-activating p 99.7 1.2E-17 4.2E-22 135.6 5.4 192 1-207 39-280 (386)
95 1o6v_A Internalin A; bacterial 99.7 4.7E-16 1.6E-20 129.3 14.8 76 118-206 305-380 (466)
96 2xot_A Amphoterin-induced prot 99.7 1.5E-16 5.1E-21 128.3 11.1 146 1-162 46-202 (361)
97 1xeu_A Internalin C; cellular 99.7 5.1E-16 1.8E-20 120.0 11.4 159 2-192 27-187 (263)
98 3bz5_A Internalin-J, INLJ; leu 99.7 6.7E-16 2.3E-20 128.3 12.7 72 1-86 49-120 (457)
99 1m9s_A Internalin B; cell inva 99.7 3.8E-16 1.3E-20 133.7 10.7 170 2-207 29-203 (605)
100 4glp_A Monocyte differentiatio 99.7 1.8E-16 6.3E-21 125.2 7.8 173 18-207 90-278 (310)
101 3bz5_A Internalin-J, INLJ; leu 99.7 8.1E-16 2.8E-20 127.8 11.8 164 1-207 71-239 (457)
102 1o6v_A Internalin A; bacterial 99.6 3E-15 1E-19 124.5 15.1 76 118-206 283-358 (466)
103 2je0_A Acidic leucine-rich nuc 99.6 8.5E-16 2.9E-20 108.6 9.9 124 45-207 17-146 (149)
104 1z7x_W Ribonuclease inhibitor; 99.6 1.3E-16 4.4E-21 132.1 5.0 68 118-191 337-412 (461)
105 2ell_A Acidic leucine-rich nuc 99.6 2.8E-15 9.5E-20 108.0 9.8 139 17-195 22-164 (168)
106 1w8a_A SLIT protein; signaling 99.6 2.2E-15 7.6E-20 111.1 9.4 123 2-162 16-139 (192)
107 3cvr_A Invasion plasmid antige 99.6 2.4E-15 8.3E-20 127.8 10.7 166 1-199 66-252 (571)
108 1xeu_A Internalin C; cellular 99.6 7.2E-15 2.5E-19 113.6 12.5 133 1-162 48-185 (263)
109 2ell_A Acidic leucine-rich nuc 99.6 8.5E-16 2.9E-20 110.7 6.7 127 43-207 22-153 (168)
110 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6E-20 106.9 7.1 130 17-186 15-149 (149)
111 1z7x_W Ribonuclease inhibitor; 99.6 1.3E-16 4.5E-21 132.0 1.2 160 38-207 220-404 (461)
112 3cvr_A Invasion plasmid antige 99.6 1.4E-15 4.9E-20 129.2 7.3 44 125-176 210-253 (571)
113 4b8c_D Glucose-repressible alc 99.6 2E-16 6.7E-21 138.3 1.8 149 10-187 215-369 (727)
114 1w8a_A SLIT protein; signaling 99.6 1.4E-14 4.7E-19 106.8 9.9 133 21-194 10-143 (192)
115 2o6r_A Variable lymphocyte rec 99.6 2.9E-14 1E-18 103.5 10.8 132 21-193 9-140 (177)
116 1a9n_A U2A', U2A'; complex (nu 99.6 1.1E-14 3.7E-19 105.8 8.3 134 15-190 15-153 (176)
117 3g06_A SSPH2 (leucine-rich rep 99.5 2.1E-14 7.1E-19 123.3 10.9 70 122-207 221-290 (622)
118 1jl5_A Outer protein YOPM; leu 99.5 3.1E-14 1E-18 118.2 11.0 110 2-137 139-250 (454)
119 2wfh_A SLIT homolog 2 protein 99.5 4.3E-14 1.5E-18 104.3 10.5 122 2-162 18-139 (193)
120 2wfh_A SLIT homolog 2 protein 99.5 3.8E-14 1.3E-18 104.6 10.1 129 21-191 12-140 (193)
121 1jl5_A Outer protein YOPM; leu 99.5 9.3E-14 3.2E-18 115.3 12.5 96 19-137 111-208 (454)
122 1ds9_A Outer arm dynein; leuci 99.5 6.9E-17 2.3E-21 119.7 -6.8 112 40-192 43-155 (198)
123 1a9n_A U2A', U2A'; complex (nu 99.5 8.5E-14 2.9E-18 101.0 8.7 127 40-207 14-146 (176)
124 4b8c_D Glucose-repressible alc 99.5 1.6E-14 5.6E-19 126.2 5.0 120 37-196 216-335 (727)
125 2o6r_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 97.9 10.9 126 2-167 15-140 (177)
126 4ay9_X Follicle-stimulating ho 99.5 2.4E-14 8.1E-19 114.9 5.3 180 3-207 18-208 (350)
127 1dce_A Protein (RAB geranylger 99.5 6.6E-16 2.3E-20 131.4 -4.4 170 16-207 346-566 (567)
128 3g06_A SSPH2 (leucine-rich rep 99.5 1.2E-13 4.2E-18 118.5 8.6 69 120-200 239-307 (622)
129 1ds9_A Outer arm dynein; leuci 99.4 9.5E-16 3.2E-20 113.5 -5.4 147 1-191 25-186 (198)
130 3ogk_B Coronatine-insensitive 99.4 3.8E-14 1.3E-18 120.7 1.1 39 13-53 287-326 (592)
131 1dce_A Protein (RAB geranylger 99.4 1.3E-12 4.3E-17 111.3 9.0 122 21-184 443-567 (567)
132 3sb4_A Hypothetical leucine ri 99.4 1.6E-12 5.5E-17 103.3 8.6 177 9-207 83-327 (329)
133 3g39_A Variable lymphocyte rec 99.3 1.3E-11 4.4E-16 89.0 10.5 62 19-85 30-91 (170)
134 3g39_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 91.0 8.3 106 20-162 10-115 (170)
135 2r9u_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 89.2 10.4 62 19-85 33-94 (174)
136 3un9_A NLR family member X1; l 99.3 3.3E-13 1.1E-17 109.2 1.5 163 18-197 71-259 (372)
137 2r9u_A Variable lymphocyte rec 99.3 9.2E-12 3.2E-16 90.2 8.3 105 21-162 14-118 (174)
138 2p1m_B Transport inhibitor res 99.2 1E-12 3.4E-17 111.9 0.5 81 120-206 430-511 (594)
139 3ogk_B Coronatine-insensitive 99.2 3.5E-12 1.2E-16 108.6 3.6 174 16-207 161-384 (592)
140 3sb4_A Hypothetical leucine ri 99.2 1.1E-11 3.6E-16 98.6 5.4 176 18-206 48-302 (329)
141 2p1m_B Transport inhibitor res 99.2 5.1E-12 1.8E-16 107.5 2.2 66 17-83 128-195 (594)
142 3un9_A NLR family member X1; l 99.1 2.1E-11 7.1E-16 98.7 3.3 129 19-162 101-252 (372)
143 2ifg_A High affinity nerve gro 99.1 3.9E-10 1.3E-14 90.0 10.2 96 5-137 20-116 (347)
144 2ifg_A High affinity nerve gro 99.1 2.5E-10 8.7E-15 91.1 7.3 104 22-162 11-116 (347)
145 4fdw_A Leucine rich hypothetic 99.0 2.6E-09 9E-14 87.1 9.6 67 9-82 170-236 (401)
146 1io0_A Tropomodulin; LRR prote 98.9 4.1E-09 1.4E-13 76.9 7.3 127 37-190 28-164 (185)
147 1io0_A Tropomodulin; LRR prote 98.8 5.7E-09 1.9E-13 76.1 5.5 124 14-162 31-164 (185)
148 2ra8_A Uncharacterized protein 98.8 3.5E-08 1.2E-12 79.4 9.4 168 15-192 135-322 (362)
149 4fdw_A Leucine rich hypothetic 98.7 1.2E-07 4E-12 77.4 11.0 68 9-85 126-193 (401)
150 3e4g_A ATP synthase subunit S, 98.5 1.6E-07 5.4E-12 67.7 6.2 88 45-160 61-150 (176)
151 3e4g_A ATP synthase subunit S, 98.5 1.8E-07 6E-12 67.4 4.8 63 119-188 82-150 (176)
152 3rw6_A Nuclear RNA export fact 98.3 6.9E-07 2.4E-11 68.7 4.9 80 120-207 168-257 (267)
153 2ra8_A Uncharacterized protein 98.3 3.7E-06 1.3E-10 67.6 9.1 156 13-188 166-341 (362)
154 3rw6_A Nuclear RNA export fact 98.2 2.2E-06 7.7E-11 65.9 6.9 68 16-86 167-234 (267)
155 1pgv_A TMD-1, tropomodulin TMD 97.8 2.7E-05 9.2E-10 57.0 5.8 128 37-190 33-170 (197)
156 4fs7_A Uncharacterized protein 97.8 8.7E-05 3E-09 60.0 9.4 166 16-206 227-393 (394)
157 1pgv_A TMD-1, tropomodulin TMD 97.7 9.5E-05 3.3E-09 54.1 7.3 123 15-162 37-170 (197)
158 4fs7_A Uncharacterized protein 97.7 0.00012 4E-09 59.2 7.5 178 9-206 175-371 (394)
159 4h09_A Hypothetical leucine ri 97.7 0.00035 1.2E-08 56.0 10.2 77 117-202 281-357 (379)
160 4gt6_A Cell surface protein; l 97.5 0.00067 2.3E-08 54.7 9.6 125 38-205 258-382 (394)
161 4h09_A Hypothetical leucine ri 97.3 0.0024 8.1E-08 51.1 11.0 81 117-206 258-338 (379)
162 4gt6_A Cell surface protein; l 97.1 0.0033 1.1E-07 50.7 9.6 79 117-205 283-361 (394)
163 3rfe_A Platelet glycoprotein I 96.9 0.0018 6.2E-08 44.0 5.6 57 22-85 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.01 3.5E-07 40.2 5.5 52 2-58 16-68 (130)
165 2lz0_A Uncharacterized protein 53.3 21 0.00072 22.4 4.2 44 9-55 10-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=3e-24 Score=188.75 Aligned_cols=194 Identities=22% Similarity=0.236 Sum_probs=141.0
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+.+|. .+..+++|++|++++|.+ .+.+|..+..+++|++|++++|.+++..| ..+..+++|++|+++
T Consensus 449 L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l--~~~~p~~l~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 449 LWLNMLEGEIPQ-ELMYVKTLETLILDFNDL--TGEIPSGLSNCTNLNWISLSNNRLTGEIP---KWIGRLENLAILKLS 522 (768)
T ss_dssp CCSSCCCSCCCG-GGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCCSCCC---GGGGGCTTCCEEECC
T ss_pred CCCCcccCcCCH-HHcCCCCceEEEecCCcc--cCcCCHHHhcCCCCCEEEccCCccCCcCC---hHHhcCCCCCEEECC
Confidence 345566655553 356666666666666666 45566666666777777777777666666 566666777777777
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceecccccc------------------------------------------
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVI------------------------------------------ 113 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~------------------------------------------ 113 (207)
+|.+.+..+..++.+++| ++|.+.+.+|..-+.
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 777666666666555554 566665544431000
Q ss_pred ---------------------ccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhh
Q 038163 114 ---------------------RGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG 172 (207)
Q Consensus 114 ---------------------~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~ 172 (207)
-...+..+++|+.|+++ +|.+++.+|..++ .++.|+.|++++|.++ +.+ |. .
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs--~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~--g~i-p~-~ 675 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS--YNMLSGYIPKEIG-SMPYLFILNLGHNDIS--GSI-PD-E 675 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC--SSCCBSCCCGGGG-GCTTCCEEECCSSCCC--SCC-CG-G
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECc--CCcccccCCHHHh-ccccCCEEeCcCCccC--CCC-Ch-H
Confidence 00135567789999999 9999999999998 9999999999999999 888 88 8
Q ss_pred hcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 173 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 173 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
++.+++|+.||+++|++.+.+|..+..+++|++||
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 99999999999999999999999999999998764
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=1.3e-24 Score=172.46 Aligned_cols=180 Identities=17% Similarity=0.205 Sum_probs=81.4
Q ss_pred CccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCC
Q 038163 4 NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSP 83 (207)
Q Consensus 4 n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 83 (207)
|.+.+.+|.. |..+++|++|++++|.+ ...+|..+..+++|++|++++|.+++..| ..+..+++|++|++++|.
T Consensus 87 n~l~~~~p~~-l~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 87 NNLVGPIPPA-IAKLTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALSGTLP---PSISSLPNLVGITFDGNR 160 (313)
T ss_dssp TTEESCCCGG-GGGCTTCSEEEEEEECC--EEECCGGGGGCTTCCEEECCSSEEESCCC---GGGGGCTTCCEEECCSSC
T ss_pred CcccccCChh-HhcCCCCCEEECcCCee--CCcCCHHHhCCCCCCEEeCCCCccCCcCC---hHHhcCCCCCeEECcCCc
Confidence 4444444422 44555555555555555 33444555555555555555555554444 445555555555555555
Q ss_pred CChHHHHhhcccc-cc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163 84 LHISLLQSIASIF-PL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS 157 (207)
Q Consensus 84 ~~~~~~~~l~~l~-~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~ 157 (207)
+.+..+..+..+. .| ++|.+.+..|. .+..+. |+.|+++ +|.+++..+..+. .+++|+.|+++
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-------~~~~l~-L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~L~ 229 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-------TFANLN-LAFVDLS--RNMLEGDASVLFG-SDKNTQKIHLA 229 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCG-------GGGGCC-CSEEECC--SSEEEECCGGGCC-TTSCCSEEECC
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-------HHhCCc-ccEEECc--CCcccCcCCHHHh-cCCCCCEEECC
Confidence 5444444444333 22 44444443333 333332 4444444 4444333333333 34444444444
Q ss_pred CCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCcc
Q 038163 158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 205 (207)
Q Consensus 158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 205 (207)
+|.++ +.+ + .+..+++|++|++++|++.+.+|..+..+++|+.
T Consensus 230 ~N~l~--~~~-~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 230 KNSLA--FDL-G--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp SSEEC--CBG-G--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred CCcee--eec-C--cccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 44443 222 1 2334444444444444444444444444444443
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1e-23 Score=185.36 Aligned_cols=187 Identities=24% Similarity=0.313 Sum_probs=126.2
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.+.+.+| ..+..+++|++|++++|.+ .+.+|..+..+++|++|++++|.+++..| ..+..+++|++|++++
T Consensus 426 s~N~l~~~~p-~~l~~l~~L~~L~L~~n~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 426 SFNYLSGTIP-SSLGSLSKLRDLKLWLNML--EGEIPQELMYVKTLETLILDFNDLTGEIP---SGLSNCTNLNWISLSN 499 (768)
T ss_dssp CSSEEESCCC-GGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCCSCCC---GGGGGCTTCCEEECCS
T ss_pred cCCcccCccc-HHHhcCCCCCEEECCCCcc--cCcCCHHHcCCCCceEEEecCCcccCcCC---HHHhcCCCCCEEEccC
Confidence 4455554444 2345555555555555555 34555555566666666666666665555 5566666666666666
Q ss_pred CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHh----------
Q 038163 82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISE---------- 146 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~---------- 146 (207)
|.+.+..+..++.+++| ++|.+.+.+|. .+..+++|+.|+++ +|.+++.+|..+..
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-------~l~~l~~L~~L~Ls--~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-------ELGDCRSLIWLDLN--TNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-------GGGGCTTCCEEECC--SSEEESBCCGGGGTTTTCBCCSTT
T ss_pred CccCCcCChHHhcCCCCCEEECCCCcccCcCCH-------HHcCCCCCCEEECC--CCccCCcCChHHhcccchhhhhcc
Confidence 66665555555555554 66677666666 77778888888888 88776555543320
Q ss_pred -----------------------------------------------------------cCCCccEEEccCCccCccccc
Q 038163 147 -----------------------------------------------------------SMSSLKYLSLSYYTLGINSSE 167 (207)
Q Consensus 147 -----------------------------------------------------------~~~~L~~L~l~~n~~~~~~~i 167 (207)
.+++|+.|++++|.++ +.+
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~--g~i 648 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS--GYI 648 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB--SCC
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc--ccC
Confidence 1346778888888888 788
Q ss_pred chhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 168 TLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 168 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
|. .++.+++|+.|++++|++.+.+|..++.+++|++||
T Consensus 649 -p~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 649 -PK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp -CG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred -CH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 87 888889999999999999988898899888888765
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=3.1e-24 Score=170.23 Aligned_cols=185 Identities=17% Similarity=0.253 Sum_probs=159.6
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCC-CccEEEc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFT-NMEYLKL 79 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~-~L~~L~l 79 (207)
|++|.+.+.+|. .|.++++|++|++++|.+ ...+|..+..+++|++|++++|.+++..| ..+..++ .|++|++
T Consensus 108 Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 108 ITHTNVSGAIPD-FLSQIKTLVTLDFSYNAL--SGTLPPSISSLPNLVGITFDGNRISGAIP---DSYGSFSKLFTSMTI 181 (313)
T ss_dssp EEEECCEEECCG-GGGGCTTCCEEECCSSEE--ESCCCGGGGGCTTCCEEECCSSCCEEECC---GGGGCCCTTCCEEEC
T ss_pred CcCCeeCCcCCH-HHhCCCCCCEEeCCCCcc--CCcCChHHhcCCCCCeEECcCCcccCcCC---HHHhhhhhcCcEEEC
Confidence 357888887774 579999999999999999 56889999999999999999999998888 7888888 9999999
Q ss_pred CCCCCChHHHHhhcccc--cc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 80 DDSPLHISLLQSIASIF--PL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 80 ~~~~~~~~~~~~l~~l~--~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
++|.+.+..+..+..+. .| ++|.+.+..+. .+..+++|+.|+++ +|.+++..+. +. .+++|++|+
T Consensus 182 ~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~-~~-~l~~L~~L~ 250 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV-------LFGSDKNTQKIHLA--KNSLAFDLGK-VG-LSKNLNGLD 250 (313)
T ss_dssp CSSEEEEECCGGGGGCCCSEEECCSSEEEECCGG-------GCCTTSCCSEEECC--SSEECCBGGG-CC-CCTTCCEEE
T ss_pred cCCeeeccCChHHhCCcccEEECcCCcccCcCCH-------HHhcCCCCCEEECC--CCceeeecCc-cc-ccCCCCEEE
Confidence 99998876666665544 33 88888887777 88999999999999 9999866655 56 789999999
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
+++|.++ +.+ |. .+..+++|+.|++++|++.+.+|.. ..+++|+.++
T Consensus 251 Ls~N~l~--~~~-p~-~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~ 297 (313)
T 1ogq_A 251 LRNNRIY--GTL-PQ-GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297 (313)
T ss_dssp CCSSCCE--ECC-CG-GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGG
T ss_pred CcCCccc--CcC-Ch-HHhcCcCCCEEECcCCcccccCCCC-ccccccChHH
Confidence 9999998 788 87 8999999999999999999888875 6777777653
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=5.3e-23 Score=160.82 Aligned_cols=187 Identities=19% Similarity=0.180 Sum_probs=144.7
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCc-CCcccccchhcccCCCCccEEEc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNN-FTETVTITTQELHNFTNMEYLKL 79 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~l~~L~~L~l 79 (207)
|++|.+.+ +|+..|..+++|++|++++|.+ ....+..+..+++|++|++++|. +....| ..+..+++|++|++
T Consensus 39 l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~---~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 39 LHGNRISH-VPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDP---ATFHGLGRLHTLHL 112 (285)
T ss_dssp CTTSCCCE-ECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTCCCCCT---TTTTTCTTCCEEEC
T ss_pred eeCCcCCc-cCHHHcccCCCCCEEECCCCcc--ceeCHhhcCCccCCCEEeCCCCCCccccCH---HHhcCCcCCCEEEC
Confidence 46777774 6667788899999999999988 45557788888999999999886 776656 67788888999999
Q ss_pred CCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEE
Q 038163 80 DDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL 154 (207)
Q Consensus 80 ~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L 154 (207)
++|.+....+..+..+++| ++|.+.+..+. .+..+++|+.|+++ +|.++...+..+. .+++|+.|
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~L 182 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-------TFRDLGNLTHLFLH--GNRISSVPERAFR-GLHSLDRL 182 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCEECTTTTT-TCTTCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh-------HhccCCCccEEECC--CCcccccCHHHhc-CccccCEE
Confidence 9988875545555555555 77777764444 67888899999999 8888755555566 78889999
Q ss_pred EccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 155 SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 155 ~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
++++|.++ +.. +. .+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 183 ~l~~n~l~--~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 183 LLHQNRVA--HVH-PH-AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp ECCSSCCC--EEC-TT-TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred ECCCCccc--ccC-Hh-HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 99999888 444 55 788888999999999998876667788888887653
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=5.6e-24 Score=169.82 Aligned_cols=169 Identities=21% Similarity=0.209 Sum_probs=99.0
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhccc---------CCCCccEEEcCCCCCCh
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELH---------NFTNMEYLKLDDSPLHI 86 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~ 86 (207)
..+++|++|++++|.+ ..+|..+..+++|++|++++|++.+..| ..+. .+++|++|++++|.++
T Consensus 124 ~~l~~L~~L~Ls~n~l---~~lp~~l~~l~~L~~L~L~~n~~~~~~p---~~~~~~~~~~~~~~l~~L~~L~L~~n~l~- 196 (328)
T 4fcg_A 124 QQFAGLETLTLARNPL---RALPASIASLNRLRELSIRACPELTELP---EPLASTDASGEHQGLVNLQSLRLEWTGIR- 196 (328)
T ss_dssp GGGTTCSEEEEESCCC---CCCCGGGGGCTTCCEEEEEEETTCCCCC---SCSEEEC-CCCEEESTTCCEEEEEEECCC-
T ss_pred hccCCCCEEECCCCcc---ccCcHHHhcCcCCCEEECCCCCCccccC---hhHhhccchhhhccCCCCCEEECcCCCcC-
Confidence 4444444444444444 1344444444444444444444444444 2222 2455555555555544
Q ss_pred HHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCcc
Q 038163 87 SLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL 161 (207)
Q Consensus 87 ~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~ 161 (207)
..+..+..+++| ++|.+.+ +|. .+..+++|++|+++ +|.+.+..|..+. .+++|+.|++++|.+
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~~-l~~-------~l~~l~~L~~L~Ls--~n~~~~~~p~~~~-~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLSA-LGP-------AIHHLPKLEELDLR--GCTALRNYPPIFG-GRAPLKRLILKDCSN 265 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCCC-CCG-------GGGGCTTCCEEECT--TCTTCCBCCCCTT-CCCCCCEEECTTCTT
T ss_pred cchHhhcCCCCCCEEEccCCCCCc-Cch-------hhccCCCCCEEECc--CCcchhhhHHHhc-CCCCCCEEECCCCCc
Confidence 334444444433 5555553 343 56667777777777 7766666666666 677777777777776
Q ss_pred CcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 162 GINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 162 ~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
. +.+ |. .+..+++|+.|++++|.+.+.+|..+..+++++.+
T Consensus 266 ~--~~~-p~-~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 266 L--LTL-PL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp C--CBC-CT-TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred h--hhc-ch-hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 6 566 66 67777788888888877777777777777777654
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.3e-23 Score=167.67 Aligned_cols=182 Identities=18% Similarity=0.201 Sum_probs=154.3
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+. .+|+. +..+++|++|++++|.+ . .+|..+..+++|++|++++|.++ .+| ..+..+++|++|+++
T Consensus 88 L~~n~l~-~lp~~-l~~l~~L~~L~L~~n~l--~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp---~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 88 LRSVPLP-QFPDQ-AFRLSHLQHMTIDAAGL--M-ELPDTMQQFAGLETLTLARNPLR-ALP---ASIASLNRLRELSIR 158 (328)
T ss_dssp EESSCCS-SCCSC-GGGGTTCSEEEEESSCC--C-CCCSCGGGGTTCSEEEEESCCCC-CCC---GGGGGCTTCCEEEEE
T ss_pred ccCCCch-hcChh-hhhCCCCCEEECCCCCc--c-chhHHHhccCCCCEEECCCCccc-cCc---HHHhcCcCCCEEECC
Confidence 3567777 68866 57799999999999999 4 78989999999999999999999 567 688999999999999
Q ss_pred CCCCChHHHHhhcc---------cccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHh
Q 038163 81 DSPLHISLLQSIAS---------IFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISE 146 (207)
Q Consensus 81 ~~~~~~~~~~~l~~---------l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~ 146 (207)
+|...+..+..+.. +++| ++|.++ .+|. .+..+++|++|+++ +|.+++ ++..+.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~-------~l~~l~~L~~L~L~--~N~l~~-l~~~l~- 226 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-------SIANLQNLKSLKIR--NSPLSA-LGPAIH- 226 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG-------GGGGCTTCCEEEEE--SSCCCC-CCGGGG-
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH-------hhcCCCCCCEEEcc--CCCCCc-Cchhhc-
Confidence 98777666655432 4444 777777 5677 78899999999999 999984 555677
Q ss_pred cCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 147 SMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 147 ~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
.+++|+.|++++|.+. +.+ |. .+..+++|+.|++++|.+.+.+|..+..+++|+.||
T Consensus 227 ~l~~L~~L~Ls~n~~~--~~~-p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 227 HLPKLEELDLRGCTAL--RNY-PP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp GCTTCCEEECTTCTTC--CBC-CC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred cCCCCCEEECcCCcch--hhh-HH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 8999999999999988 777 77 899999999999999999999999999999998764
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.2e-21 Score=162.14 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=40.1
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcc-hhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKL-LQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
++|.+.+ +++..|.++++|++|++++|.+ ...+ +..|..+++|++|++++|.+++..| ..+..+++|++|+++
T Consensus 38 s~n~i~~-~~~~~~~~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 38 SLNSIAE-LNETSFSRLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLDYNQFLQLET---GAFNGLANLEVLTLT 111 (455)
T ss_dssp CSSCCCE-ECTTTTSSCTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECTTCTTCEECT---TTTTTCTTCCEEECT
T ss_pred cCCccCc-CChhHhccCccccEEECcCCcc--cceECcccccccccCCEEeCCCCccCccCh---hhccCcccCCEEeCC
Confidence 4555553 2233455555555555555555 2233 3345555555555555555555444 445555555555555
Q ss_pred CCCCCh
Q 038163 81 DSPLHI 86 (207)
Q Consensus 81 ~~~~~~ 86 (207)
+|.+.+
T Consensus 112 ~n~l~~ 117 (455)
T 3v47_A 112 QCNLDG 117 (455)
T ss_dssp TSCCBT
T ss_pred CCCCCc
Confidence 555543
No 9
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.6e-21 Score=151.70 Aligned_cols=186 Identities=20% Similarity=0.235 Sum_probs=132.7
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +++..|.++++|++|++++|.+ ....+..+..+++|++|++++|.++...+ ..+..+++|++|+++
T Consensus 35 ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 35 LSFNPLRH-LGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLVAV 108 (276)
T ss_dssp CTTCCCCE-ECTTTTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECT
T ss_pred CCCCcccc-cCHhHhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccCh---hhhcCCccccEEECC
Confidence 46777774 5556678888999999999888 44445578888899999999998887776 677888889999998
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccce-eccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCcc--
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIG-CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLK-- 152 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~-- 152 (207)
+|.+.......+..+++| ++|.+.+. +|. .+..+++|++|+++ +|.+++..+..+. .++.++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~l 178 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-------YFSNLTNLEHLDLS--SNKIQSIYCTDLR-VLHQMPLL 178 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-------GGGGCTTCCEEECC--SSCCCEECGGGGH-HHHTCTTC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCch-------hhccCCCCCEEECC--CCCCCcCCHHHhh-hhhhcccc
Confidence 888775433345444444 77777653 465 77888889999999 8888765443333 333333
Q ss_pred --EEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 153 --YLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 153 --~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
.+++++|.+. .+ +. ......+|+.|++++|++.+..+..+..+++|+.|+
T Consensus 179 ~l~L~ls~n~l~---~~-~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 179 NLSLDLSLNPMN---FI-QP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp CEEEECCSSCCC---EE-CT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred ceeeecCCCccc---cc-Cc-cccCCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence 7788888877 55 44 333445788888888888866556677777777653
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=5e-21 Score=148.60 Aligned_cols=182 Identities=19% Similarity=0.192 Sum_probs=117.5
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
+++.+. .+|..+ .+++++|++++|.+ ....+..|..+++|++|++++|.++...+ ..+..+++|++|++++
T Consensus 24 ~~~~l~-~ip~~~---~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 24 SSKKLT-AIPSNI---PADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPA---GIFKELKNLETLWVTD 94 (270)
T ss_dssp TTSCCS-SCCSCC---CTTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCT---TTTSSCTTCCEEECCS
T ss_pred cCCCCC-ccCCCC---CCCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeCh---hhhcCCCCCCEEECCC
Confidence 455555 356442 25677777777777 33334467777777777777777776544 4456677777777777
Q ss_pred CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163 82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL 156 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l 156 (207)
|.+....+..+..+++| .+|.+++..+. .+..+++|++|+++ +|.++...+..+. .+++|+.|++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~Ls--~n~l~~~~~~~~~-~l~~L~~L~L 164 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR-------VFDSLTKLTYLSLG--YNELQSLPKGVFD-KLTSLKELRL 164 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHH-------HhCcCcCCCEEECC--CCcCCccCHhHcc-CCcccceeEe
Confidence 77664333333333333 66666654444 56777777777777 7777654444455 6777777777
Q ss_pred cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
++|.+. .+ +...+..+++|+.|++++|++.+..+..+..+++|+.|
T Consensus 165 ~~n~l~---~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 165 YNNQLK---RV-PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp CSSCCS---CC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCcCc---Ee-ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 777776 45 43256777777777777777776555566677777654
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=6.6e-22 Score=155.99 Aligned_cols=192 Identities=21% Similarity=0.147 Sum_probs=123.0
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCccccc-----------------
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTI----------------- 63 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------- 63 (207)
|++|.+. .+|+.+|.++++|++|++++|.+......+..+..+++|++|++++|.+....+.
T Consensus 35 L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l 113 (306)
T 2z66_A 35 LESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113 (306)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE
T ss_pred CCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcc
Confidence 4677777 5777778888888888888888832222345555666677777766665532110
Q ss_pred ----chhcccCCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccc-eeccccccccCCCCCCCccceecccccc
Q 038163 64 ----TTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMI-GCEVNGVIRGQDFPHSKSLEHLDMEFMR 133 (207)
Q Consensus 64 ----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 133 (207)
....+..+++|++|++++|.+....+..+..+++| ++|.+.+ ..|. .+..+++|++|+++ +
T Consensus 114 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~Ls--~ 184 (306)
T 2z66_A 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-------IFTELRNLTFLDLS--Q 184 (306)
T ss_dssp ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECT--T
T ss_pred cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh-------HHhhCcCCCEEECC--C
Confidence 00123344455555555554443333333333333 5555554 3444 67777888888888 8
Q ss_pred cccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCC-CCccCC
Q 038163 134 IALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMT-SLRILD 207 (207)
Q Consensus 134 n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~l~ 207 (207)
|.+++..+..+. .+++|+.|++++|.++ .+ +...+..+++|+.|++++|++.+..|..+..++ +|+.||
T Consensus 185 n~l~~~~~~~~~-~l~~L~~L~L~~N~l~---~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 185 CQLEQLSPTAFN-SLSSLQVLNMSHNNFF---SL-DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp SCCCEECTTTTT-TCTTCCEEECTTSCCS---BC-CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred CCcCCcCHHHhc-CCCCCCEEECCCCccC---cc-ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 888766666676 7788888888888887 44 332677788888888888888877777777774 777653
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=3.9e-21 Score=150.15 Aligned_cols=182 Identities=17% Similarity=0.101 Sum_probs=150.4
Q ss_pred CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163 3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS 82 (207)
Q Consensus 3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~ 82 (207)
++.+. .+|.. -.+++++|++++|.+ ....+..+..+++|++|++++|.+++..| ..+..+++|++|++++|
T Consensus 20 ~~~l~-~ip~~---~~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 20 QQGLQ-AVPVG---IPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDA---AAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SSCCS-SCCTT---CCTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSC
T ss_pred cCCcc-cCCcC---CCCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCH---hhcCCccCCCEEeCCCC
Confidence 45555 46643 357899999999999 45455678999999999999999998877 78899999999999999
Q ss_pred C-CChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163 83 P-LHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL 156 (207)
Q Consensus 83 ~-~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l 156 (207)
. +....+..+..+++| .+|.+.+..+. .+..+++|++|+++ +|.++...+..+. .+++|+.|++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~L~l 160 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-------LFRGLAALQYLYLQ--DNALQALPDDTFR-DLGNLTHLFL 160 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHh-------HhhCCcCCCEEECC--CCcccccCHhHhc-cCCCccEEEC
Confidence 7 664445556555555 78888876666 78899999999999 9999866566677 8999999999
Q ss_pred cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
++|.++ .+ +...+..+++|+.|++++|.+.+..|..+..+++|+.||
T Consensus 161 ~~n~l~---~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 161 HGNRIS---SV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp CSSCCC---EE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccc---cc-CHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence 999998 66 543688999999999999999988889999999998764
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=4e-21 Score=159.08 Aligned_cols=82 Identities=24% Similarity=0.252 Sum_probs=40.1
Q ss_pred CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163 118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197 (207)
Q Consensus 118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 197 (207)
+..+++|+.|+++ +|.+++..+..+. .+++|+.|++++|.++ +.. +. .+..+++|+.|++++|++.+..|..+
T Consensus 295 ~~~l~~L~~L~Ls--~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~--~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 295 FSHFTDLEQLTLA--QNEINKIDDNAFW-GLTHLLKLNLSQNFLG--SID-SR-MFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp TTTCTTCCEEECT--TSCCCEECTTTTT-TCTTCCEEECCSSCCC--EEC-GG-GGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccCCCCCEEECC--CCcccccChhHhc-CcccCCEEECCCCccC--CcC-hh-HhcCcccCCEEECCCCcccccChhhc
Confidence 4445555555555 5555544444444 4555555555555554 222 22 44445555555555555544444444
Q ss_pred cCCCCCccC
Q 038163 198 ANMTSLRIL 206 (207)
Q Consensus 198 ~~l~~L~~l 206 (207)
..+++|++|
T Consensus 368 ~~l~~L~~L 376 (455)
T 3v47_A 368 LGLPNLKEL 376 (455)
T ss_dssp TTCTTCCEE
T ss_pred cccccccEE
Confidence 444444443
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=9.6e-21 Score=157.07 Aligned_cols=194 Identities=19% Similarity=0.156 Sum_probs=134.6
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +++..|.++++|++|++++|.+ ....+..|..+++|++|++++|.++...+ ..+..+++|++|+++
T Consensus 82 L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 82 LMENNIQM-IQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIPS---GAFEYLSKLRELWLR 155 (452)
T ss_dssp CCSSCCCE-ECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBCCT---TTSSSCTTCCEEECC
T ss_pred CcCCcCce-ECHHHcCCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCccCh---hhhcccCCCCEEECC
Confidence 56788885 5556688899999999999988 45556788888899999999998887666 567788888888888
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceecccc----------------ccccCCCCCCCccceecccccccccCch
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNG----------------VIRGQDFPHSKSLEHLDMEFMRIALNTS 139 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~----------------~~~~~~~~~~~~L~~L~l~~~~n~~~~~ 139 (207)
+|.+.......+..+++| .+|...+.++... ...+..+..+++|+.|+++ +|.+++.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls--~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMS--GNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECT--TSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECc--CCcCccc
Confidence 888764333333333333 2222111122110 0001145566777888888 8877766
Q ss_pred hHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 140 FLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 140 ~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
.+..+. .+++|+.|++++|.+. +.. +. .+..+++|+.|++++|++.+..+..+..+++|+.|+
T Consensus 234 ~~~~~~-~l~~L~~L~L~~n~l~--~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 234 RPGSFH-GLSSLKKLWVMNSQVS--LIE-RN-AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CGGGGT-TCTTCCEEECTTSCCC--EEC-TT-TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred Cccccc-CccCCCEEEeCCCcCc--eEC-HH-HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 677777 7888888888888887 333 44 778888888888888888876667777788887653
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=7e-21 Score=157.42 Aligned_cols=194 Identities=17% Similarity=0.150 Sum_probs=132.1
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +++..|.++++|++|++++|.+ ....+..|..+++|++|++++|.++...+ ..+..+++|++|+++
T Consensus 71 L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 71 LHENQIQI-IKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPN---GAFVYLSKLKELWLR 144 (440)
T ss_dssp CCSCCCCE-ECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCT---TTSCSCSSCCEEECC
T ss_pred ccCCcCCe-eCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCH---hHhhccccCceeeCC
Confidence 46777774 5556788899999999999988 45555778888899999999988887665 567788888888888
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceecccc----------------ccccCCCCCCCccceecccccccccCch
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNG----------------VIRGQDFPHSKSLEHLDMEFMRIALNTS 139 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~----------------~~~~~~~~~~~~L~~L~l~~~~n~~~~~ 139 (207)
+|.+.......+..+++| .+|...+.++... ...+..+..+++|+.|+++ +|.+++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls--~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLS--GNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECT--TSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECC--CCccCcc
Confidence 888764333334333333 3322222222110 0001145566677777777 7777765
Q ss_pred hHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 140 FLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 140 ~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
.+..+. .+++|+.|++++|.+. .+.+. .+..+++|+.|++++|++.+..+..+..+++|+.|+
T Consensus 223 ~~~~~~-~l~~L~~L~L~~n~l~---~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 223 RPGSFQ-GLMHLQKLWMIQSQIQ---VIERN-AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp CTTTTT-TCTTCCEEECTTCCCC---EECTT-SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred Chhhhc-cCccCCEEECCCCcee---EEChh-hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence 566666 7778888888888877 44143 677788888888888888876667777778777653
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=156.46 Aligned_cols=168 Identities=19% Similarity=0.212 Sum_probs=129.7
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +++..|.++++|++|++++|.+ ....|..|.++++|++|++++|.++...+ ..+..+++|++|+++
T Consensus 39 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 39 LGKNRIKT-LNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPL---GVFTGLSNLTKLDIS 112 (477)
T ss_dssp CCSSCCCE-ECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCT---TSSTTCTTCCEEECT
T ss_pred CCCCccce-ECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCc---ccccCCCCCCEEECC
Confidence 56788885 5556789999999999999999 55568889999999999999999987665 567889999999999
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.+....+..+..+++| .+|.+.+..+. .+..+++|+.|+++ +|.++...+..+. .+++|+.|+
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~l~-~l~~L~~L~ 182 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-------AFSGLNSLEQLTLE--KCNLTSIPTEALS-HLHGLIVLR 182 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-------SSTTCTTCCEEEEE--SCCCSSCCHHHHT-TCTTCCEEE
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChh-------hccCCCCCCEEECC--CCcCcccChhHhc-ccCCCcEEe
Confidence 999886655556555555 77887776666 78889999999999 9988866667777 888899999
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCc
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASND 188 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~ 188 (207)
+++|.+. .+ +...+..+++|+.|++++|.
T Consensus 183 l~~n~i~---~~-~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 183 LRHLNIN---AI-RDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp EESCCCC---EE-CTTCSCSCTTCCEEEEECCT
T ss_pred CCCCcCc---Ee-ChhhcccCcccceeeCCCCc
Confidence 9888887 33 22255555555555555443
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=3.7e-21 Score=151.66 Aligned_cols=171 Identities=19% Similarity=0.181 Sum_probs=138.3
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcch-hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLL-QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKL 79 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l 79 (207)
|++|.+. .+|+. +..+++|++|++++|.+ ....+ ..+..+++|++|++++|.+.+..+ ..+..+++|++|++
T Consensus 85 Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l 157 (306)
T 2z66_A 85 LSFNGVI-TMSSN-FLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKM 157 (306)
T ss_dssp CCSCSEE-EEEEE-EETCTTCCEEECTTSEE--ESSTTTTTTTTCTTCCEEECTTSCCEECST---TTTTTCTTCCEEEC
T ss_pred CCCCccc-cChhh-cCCCCCCCEEECCCCcc--cccccchhhhhccCCCEEECCCCcCCccch---hhcccCcCCCEEEC
Confidence 4566666 46644 68899999999999998 23222 478889999999999999988777 67889999999999
Q ss_pred CCCCCCh-HHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccE
Q 038163 80 DDSPLHI-SLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKY 153 (207)
Q Consensus 80 ~~~~~~~-~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~ 153 (207)
++|.+.+ ..+..+..+++| ++|.+++..+. .+..+++|+.|+++ +|.+++..+..+. .+++|+.
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~ 227 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-------AFNSLSSLQVLNMS--HNNFFSLDTFPYK-CLNSLQV 227 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-------TTTTCTTCCEEECT--TSCCSBCCSGGGT-TCTTCCE
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH-------HhcCCCCCCEEECC--CCccCccChhhcc-CcccCCE
Confidence 9999875 345555555555 88888886676 88899999999999 9999866555677 8999999
Q ss_pred EEccCCccCcccccchhhhhcCC-CCCceEEecCCcCCCC
Q 038163 154 LSLSYYTLGINSSETLNQGLCSL-VHLQELYIASNDLRGS 192 (207)
Q Consensus 154 L~l~~n~~~~~~~i~~~~~~~~~-~~L~~L~l~~n~l~~~ 192 (207)
|++++|.+. +.. +. .+..+ ++|+.|++++|++...
T Consensus 228 L~L~~N~l~--~~~-~~-~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 228 LDYSLNHIM--TSK-KQ-ELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp EECTTSCCC--BCS-SS-SCCCCCTTCCEEECTTCCEECS
T ss_pred eECCCCCCc--ccC-HH-HHHhhhccCCEEEccCCCeecc
Confidence 999999998 555 55 77887 4999999999999864
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=155.80 Aligned_cols=169 Identities=18% Similarity=0.185 Sum_probs=120.0
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEE--
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLK-- 78 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~-- 78 (207)
|++|.+. .+++..|.++++|++|++++|.+ ....+..|..+++|++|++++|.++...+ ..+..+++|++|+
T Consensus 95 Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 95 LSRNHIR-TIEIGAFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPS---YAFNRIPSLRRLDLG 168 (440)
T ss_dssp CCSSCCC-EECGGGGTTCSSCCEEECCSSCC--SSCCTTTSCSCSSCCEEECCSCCCCEECT---TTTTTCTTCCEEECC
T ss_pred CCCCcCC-ccChhhccCCccCCEEECCCCcC--CeeCHhHhhccccCceeeCCCCcccccCH---HHhhhCcccCEeCCC
Confidence 4567776 35556677888888888888877 33334467777778888887777765444 3444444445554
Q ss_pred -----------------------cCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceeccc
Q 038163 79 -----------------------LDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDME 130 (207)
Q Consensus 79 -----------------------l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 130 (207)
+++|.++. . +.+..+++| ++|.+++..+. .+..+++|+.|+++
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I-PNLTPLIKLDELDLSGNHLSAIRPG-------SFQGLMHLQKLWMI 239 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C-CCCTTCSSCCEEECTTSCCCEECTT-------TTTTCTTCCEEECT
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCcc-c-cccCCCcccCEEECCCCccCccChh-------hhccCccCCEEECC
Confidence 44444431 1 122223333 66666665555 88999999999999
Q ss_pred ccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163 131 FMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 131 ~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~ 191 (207)
+|.+++..+..+. .+++|+.|++++|.++ .+ +...+..+++|+.|++++|.+.-
T Consensus 240 --~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~---~~-~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 240 --QSQIQVIERNAFD-NLQSLVEINLAHNNLT---LL-PHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp --TCCCCEECTTSST-TCTTCCEEECTTSCCC---CC-CTTTTSSCTTCCEEECCSSCEEC
T ss_pred --CCceeEEChhhhc-CCCCCCEEECCCCCCC---cc-ChhHhccccCCCEEEcCCCCccC
Confidence 9999977777777 8999999999999998 66 54478899999999999999863
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=157.24 Aligned_cols=187 Identities=20% Similarity=0.282 Sum_probs=111.2
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +++..|.++++|++|++++|.+ ....+..|..+++|++|++++|.++...+ ..+..+++|++|+++
T Consensus 63 L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 63 LNENIVSA-VEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLD---YMFQDLYNLKSLEVG 136 (477)
T ss_dssp CTTSCCCE-ECTTTTTTCTTCCEEECCSSCC--CSCCTTSSTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEEEC
T ss_pred CCCCccCE-eChhhhhCCccCCEEECCCCcC--CccCcccccCCCCCCEEECCCCccccCCh---hHccccccCCEEECC
Confidence 35566664 3334566666666666666666 22222345566666666666666655544 444555555555555
Q ss_pred CCCCChHHHHh------------------------hcccccc-----cCCcccceeccccccccCCCCCCC---------
Q 038163 81 DSPLHISLLQS------------------------IASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSK--------- 122 (207)
Q Consensus 81 ~~~~~~~~~~~------------------------l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~--------- 122 (207)
+|.+....+.. +..+++| .+|.+.+..+. .+..++
T Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-------~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-------SFKRLYRLKVLEISH 209 (477)
T ss_dssp CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-------CSCSCTTCCEEEEEC
T ss_pred CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-------hcccCcccceeeCCC
Confidence 55444322222 2222222 33333332221 233333
Q ss_pred ---------------ccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCC
Q 038163 123 ---------------SLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASN 187 (207)
Q Consensus 123 ---------------~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n 187 (207)
+|+.|+++ +|.++...+..+. .+++|+.|++++|.+. .+ +...+..+++|+.|++++|
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~---~~-~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSIT--HCNLTAVPYLAVR-HLVYLRFLNLSYNPIS---TI-EGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEE--SSCCCSCCHHHHT-TCTTCCEEECCSSCCC---EE-CTTSCTTCTTCCEEECCSS
T ss_pred CccccccCcccccCccccEEECc--CCcccccCHHHhc-CccccCeeECCCCcCC---cc-ChhhccccccCCEEECCCC
Confidence 55566666 6666644445666 7888888888888887 55 3336788888999999999
Q ss_pred cCCCCccccccCCCCCccCC
Q 038163 188 DLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 188 ~l~~~~p~~~~~l~~L~~l~ 207 (207)
++.+..|..+..+++|+.||
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEE
T ss_pred ccceECHHHhcCcccCCEEE
Confidence 88877788888888888764
No 20
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.3e-21 Score=154.96 Aligned_cols=183 Identities=19% Similarity=0.170 Sum_probs=128.9
Q ss_pred CCCCccCceecCccc-cCCCCCcEEecCCCcccCCCcchhhhcCC-----CCCCEEEcCCCcCCcccccchhcccCCCCc
Q 038163 1 MSFNEINNLVVPQGY-NGLRKLKSLDLSGVGVRDGSKLLQSIGSF-----SSLNSLYLSSNNFTETVTITTQELHNFTNM 74 (207)
Q Consensus 1 l~~n~~~~~~p~~~~-~~l~~L~~L~ls~n~i~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L 74 (207)
|++|.+.+.+|..++ ..+++|++|++++|.+ ... |..+..+ ++|++|++++|.+++..| ..+..+++|
T Consensus 102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~---~~~~~l~~L 175 (312)
T 1wwl_A 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSW--ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC---EQVRVFPAL 175 (312)
T ss_dssp EEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC--SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT---TTCCCCSSC
T ss_pred ccCCcccchhHHHHHHhcCCCccEEEccCCCC--cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH---HHhccCCCC
Confidence 356778877776643 7888888888888888 333 6666665 888888888888888777 678888888
Q ss_pred cEEEcCCCCCChH--HHHhh--cccccc-----cCCcccc--eeccccccccCCCCCCCccceecccccccccCchhH-H
Q 038163 75 EYLKLDDSPLHIS--LLQSI--ASIFPL-----LKNLSMI--GCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL-Q 142 (207)
Q Consensus 75 ~~L~l~~~~~~~~--~~~~l--~~l~~L-----~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~-~ 142 (207)
++|++++|.+.+. .+..+ ..+++| ++|.+++ ..+.. .+..+++|++|+++ +|.+++..+ .
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------~~~~l~~L~~L~Ls--~N~l~~~~~~~ 247 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA------LAAARVQLQGLDLS--HNSLRDAAGAP 247 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH------HHHTTCCCSEEECT--TSCCCSSCCCS
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH------HHhcCCCCCEEECC--CCcCCcccchh
Confidence 8999988887654 23333 444444 6677663 12210 23456788888888 888876543 2
Q ss_pred HHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 143 IISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 143 ~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
.+. .+++|+.|++++|.++ .+ |. .+. ++|+.|++++|++.+. |. +..+++|+.|+
T Consensus 248 ~~~-~l~~L~~L~Ls~N~l~---~i-p~-~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 248 SCD-WPSQLNSLNLSFTGLK---QV-PK-GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS 302 (312)
T ss_dssp CCC-CCTTCCEEECTTSCCS---SC-CS-SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred hhh-hcCCCCEEECCCCccC---hh-hh-hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence 333 4678888888888887 77 66 444 7888888888888765 55 77778777653
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=3.9e-22 Score=172.02 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=137.2
Q ss_pred CCccCceecCccccCCCCCcEEecCCCcccCCCc-----------------chhhhc--CCCCCCEEEcCCCcCCccccc
Q 038163 3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSK-----------------LLQSIG--SFSSLNSLYLSSNNFTETVTI 63 (207)
Q Consensus 3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~ 63 (207)
.|.++| +|+. ++++++|++|++++|.+ .+. +|..++ ++++|++|++++|.+.+.+|
T Consensus 192 ~n~l~~-ip~~-l~~l~~L~~L~Ls~n~l--~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p- 266 (636)
T 4eco_A 192 SNNITF-VSKA-VMRLTKLRQFYMGNSPF--VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP- 266 (636)
T ss_dssp SCEEEE-ECGG-GGGCTTCCEEEEESCCC--CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-
T ss_pred cCCCcc-CCHH-HhcccCCCEEECcCCcc--ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-
Confidence 467776 7754 68888888888888888 343 788877 88888888888888888888
Q ss_pred chhcccCCCCccEEEcCCCC-CCh-HHHHhhccc------ccc-----cCCcccceeccccccccCCCCCCCccceeccc
Q 038163 64 TTQELHNFTNMEYLKLDDSP-LHI-SLLQSIASI------FPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDME 130 (207)
Q Consensus 64 ~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 130 (207)
..+.++++|++|++++|. +++ ..|..++.+ ++| ++|.++ .+|.. +.+..+++|++|+++
T Consensus 267 --~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~-----~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 267 --TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE-----TSLQKMKKLGMLECL 338 (636)
T ss_dssp --TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH-----HHHTTCTTCCEEECC
T ss_pred --HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch-----hhhccCCCCCEEeCc
Confidence 778888888888888887 777 677666544 444 677776 44420 036678888888888
Q ss_pred ccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCC-CceEEecCCcCCCCccccccCCC--CCccC
Q 038163 131 FMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVH-LQELYIASNDLRGSLPWCMANMT--SLRIL 206 (207)
Q Consensus 131 ~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~l~--~L~~l 206 (207)
+|.+++.+| .+. .+++|+.|++++|.+. .+ |. .+..+++ |+.|++++|.+. .+|..+..++ +|+.|
T Consensus 339 --~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~---~l-p~-~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 407 (636)
T 4eco_A 339 --YNQLEGKLP-AFG-SEIKLASLNLAYNQIT---EI-PA-NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI 407 (636)
T ss_dssp --SCCCEEECC-CCE-EEEEESEEECCSSEEE---EC-CT-TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred --CCcCccchh-hhC-CCCCCCEEECCCCccc---cc-cH-hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence 888887777 666 7788888888888887 77 77 7888888 999999999988 6787776544 66654
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=1.7e-20 Score=160.44 Aligned_cols=186 Identities=19% Similarity=0.230 Sum_probs=103.6
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
+++|.+.+ +++.+|..+++|++|++++|.+ ..+|..+..+++|++|++++|.+....| ..+..+++|++|+++
T Consensus 261 l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l---~~lp~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 261 LQKHYFFN-ISSNTFHCFSGLQELDLTATHL---SELPSGLVGLSTLKKLVLSANKFENLCQ---ISASNFPSLTHLSIK 333 (606)
T ss_dssp CTTCCCSS-CCTTTTTTCTTCSEEECTTSCC---SCCCSSCCSCTTCCEEECTTCCCSBGGG---GCGGGCTTCSEEECC
T ss_pred eecCccCc-cCHHHhccccCCCEEeccCCcc---CCCChhhcccccCCEEECccCCcCcCch---hhhhccCcCCEEECC
Confidence 35566664 5556678888888888888888 4677777788888888888888877666 566666777777777
Q ss_pred CCCCChHHHH-hhcccccc-----cCCccccee--ccccccccCCCCCCCccceecccccccccCchhHHHHH-------
Q 038163 81 DSPLHISLLQ-SIASIFPL-----LKNLSMIGC--EVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIIS------- 145 (207)
Q Consensus 81 ~~~~~~~~~~-~l~~l~~L-----~~n~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~------- 145 (207)
+|.+.+..+. .+..+++| ++|.+.+.. +. .+..+++|++|+++ +|.+.+..+..+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-------QLRNLSHLQSLNLS--YNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-------TTTTCTTCCEEECC--SCSCEEECTTTTTTCTTCSE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcch-------hcccCCCCCEEECC--CCcCCcCCHHHhcCCccCCe
Confidence 7665533222 13333333 445554432 22 34444444444444 4444433333333
Q ss_pred -----------------hcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCC---ccccccCCCCCcc
Q 038163 146 -----------------ESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGS---LPWCMANMTSLRI 205 (207)
Q Consensus 146 -----------------~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~---~p~~~~~l~~L~~ 205 (207)
..+++|+.|++++|.+. +.. +. .+..+++|+.|++++|++.+. .+..+..+++|+.
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD--ISS-EQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB--TTC-TT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccC--CcC-HH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 04445555555555554 222 33 455555555555555555431 1133445555554
Q ss_pred C
Q 038163 206 L 206 (207)
Q Consensus 206 l 206 (207)
|
T Consensus 481 L 481 (606)
T 3t6q_A 481 L 481 (606)
T ss_dssp E
T ss_pred E
Confidence 3
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=1.7e-20 Score=160.51 Aligned_cols=183 Identities=22% Similarity=0.240 Sum_probs=95.9
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcc--hhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEc
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKL--LQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKL 79 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l 79 (207)
++|.+.+.+|+..+..+++|++|++++|.+ .... +..+..+++|++|++++|.+.+..| ..+..+++|++|++
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDI--ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT---EAFKECPQLELLDL 407 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCC--CEEEESTTTTTTCTTCCEEECCSCSCEEECT---TTTTTCTTCSEEEC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCcc--ccccCcchhcccCCCCCEEECCCCcCCcCCH---HHhcCCccCCeEEC
Confidence 445555555555556666666666666666 2222 4455666666666666666655555 45555566666666
Q ss_pred CCCCCChHHHHh-hcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchh---HHHHHhcCCC
Q 038163 80 DDSPLHISLLQS-IASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF---LQIISESMSS 150 (207)
Q Consensus 80 ~~~~~~~~~~~~-l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~---~~~l~~~~~~ 150 (207)
++|.+.+..+.. +..+++| ++|.+.+..+. .+..+++|+.|+++ +|.+++.. +..+. .+++
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~L~--~n~l~~~~~~~~~~~~-~l~~ 477 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ-------LFDGLPALQHLNLQ--GNHFPKGNIQKTNSLQ-TLGR 477 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT-------TTTTCTTCCEEECT--TCBCGGGEECSSCGGG-GCTT
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH-------HHhCCCCCCEEECC--CCCCCccccccchhhc-cCCC
Confidence 666554332211 2233322 44555444343 45555556666665 55554311 12334 4555
Q ss_pred ccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCC
Q 038163 151 LKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSL 203 (207)
Q Consensus 151 L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L 203 (207)
|+.|++++|.++ +.. |. .+..+++|+.|++++|++.+..|..+..+++|
T Consensus 478 L~~L~Ls~n~l~--~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 478 LEILVLSFCDLS--SID-QH-AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp CCEEECTTSCCC--EEC-TT-TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred ccEEECCCCccC--ccC-hh-hhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 555555555555 222 33 55555555555555555555555555555544
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=6.6e-20 Score=142.29 Aligned_cols=172 Identities=19% Similarity=0.174 Sum_probs=141.2
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+. .+|+..|..+++|++|++++|.+ ....+..+..+++|++|++++|.++...+ ..+..+++|++|+++
T Consensus 44 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 44 LQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPI---GVFDQLVNLAELRLD 117 (270)
T ss_dssp CCSSCCS-CCCTTSSSSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCCT---TTTTTCSSCCEEECC
T ss_pred CcCCCCC-eeCHHHhcCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCCH---hHcccccCCCEEECC
Confidence 5678888 46777789999999999999999 44334456889999999999999998766 677889999999999
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.+....+..+..+++| ++|.+.+..+. .+..+++|+.|+++ +|.++...+..+. .+++|+.|+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~--~n~l~~~~~~~~~-~l~~L~~L~ 187 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-------VFDKLTSLKELRLY--NNQLKRVPEGAFD-KLTELKTLK 187 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCSCCCTTTTT-TCTTCCEEE
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh-------HccCCcccceeEec--CCcCcEeChhHhc-cCCCcCEEE
Confidence 999886555555555555 78888765444 68899999999999 9999866566677 889999999
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCC
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGS 192 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~ 192 (207)
+++|.++ .+ +...+..+++|+.|++++|++...
T Consensus 188 L~~N~l~---~~-~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 188 LDNNQLK---RV-PEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCSSCCS---CC-CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCCCcCC---cC-CHHHhccccCCCEEEecCCCeeCC
Confidence 9999998 66 553688899999999999998644
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=4.7e-21 Score=154.09 Aligned_cols=171 Identities=19% Similarity=0.150 Sum_probs=120.2
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+. .+|+..+.++++|++|++++|.+ ....+..+..+++|++|++++|.++...+ ..+..+++|++|+++
T Consensus 59 l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 59 LSNNRIT-YISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLL 132 (353)
T ss_dssp CTTSCCC-EECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCH---HHHTTCTTCSEEECT
T ss_pred CCCCcCc-ccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCH---hHhCCCccCCEEECC
Confidence 4567777 46666678888888888888888 44455677888888888888888876555 447778888888888
Q ss_pred CCCCChHHH-Hhhcccccc-----cCC-cccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccE
Q 038163 81 DSPLHISLL-QSIASIFPL-----LKN-LSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKY 153 (207)
Q Consensus 81 ~~~~~~~~~-~~l~~l~~L-----~~n-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~ 153 (207)
+|.+..... ..+..+++| ++| .+....+. .+..+++|+.|+++ +|.+++..+..+. .+++|++
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~l~-~l~~L~~ 202 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-------DFAGLTFLEELEID--ASDLQSYEPKSLK-SIQNVSH 202 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-------TTTTCCEEEEEEEE--ETTCCEECTTTTT-TCSEEEE
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHH-------HccCCCCCCEEECC--CCCcCccCHHHHh-ccccCCe
Confidence 887763211 134444444 444 34443344 67778888888888 8888766677777 7788888
Q ss_pred EEccCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163 154 LSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 154 L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~ 191 (207)
|++++|.+. .+ +...+..+++|+.|++++|.+.+
T Consensus 203 L~l~~n~l~---~~-~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 203 LILHMKQHI---LL-LEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EEEECSCST---TH-HHHHHHHTTTEEEEEEESCBCTT
T ss_pred ecCCCCccc---cc-hhhhhhhcccccEEECCCCcccc
Confidence 888888876 66 55345557888888888888775
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=2.9e-21 Score=166.55 Aligned_cols=183 Identities=10% Similarity=0.111 Sum_probs=155.8
Q ss_pred CCCCccCce-----------------ecCcccc--CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCc-CCc-
Q 038163 1 MSFNEINNL-----------------VVPQGYN--GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNN-FTE- 59 (207)
Q Consensus 1 l~~n~~~~~-----------------~p~~~~~--~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-~~~- 59 (207)
|++|.+.|. +|+. +. ++++|++|++++|.+ .+.+|..+.++++|++|++++|. +++
T Consensus 213 Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~~l~~~ 289 (636)
T 4eco_A 213 MGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPN--LTKLPTFLKALPEMQLINVACNRGISGE 289 (636)
T ss_dssp EESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTT--CSSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred CcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcC--CccChHHHhcCCCCCEEECcCCCCCccc
Confidence 457788874 8855 67 999999999999999 68899999999999999999998 998
Q ss_pred ccccchhcccCC------CCccEEEcCCCCCChHHHH--hhcccccc-----cCCcccceeccccccccCCCCCCCccce
Q 038163 60 TVTITTQELHNF------TNMEYLKLDDSPLHISLLQ--SIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEH 126 (207)
Q Consensus 60 ~~~~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~ 126 (207)
.+| ..+..+ ++|++|++++|.++ .++. .++.+++| ++|.+.|.+| .+..+++|+.
T Consensus 290 ~lp---~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--------~~~~l~~L~~ 357 (636)
T 4eco_A 290 QLK---DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--------AFGSEIKLAS 357 (636)
T ss_dssp HHH---HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--------CCEEEEEESE
T ss_pred cch---HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--------hhCCCCCCCE
Confidence 788 566655 89999999999998 6666 67766666 8888887776 5778899999
Q ss_pred ecccccccccCchhHHHHHhcCCC-ccEEEccCCccCcccccchhhhhcCCC--CCceEEecCCcCCCCcccccc-----
Q 038163 127 LDMEFMRIALNTSFLQIISESMSS-LKYLSLSYYTLGINSSETLNQGLCSLV--HLQELYIASNDLRGSLPWCMA----- 198 (207)
Q Consensus 127 L~l~~~~n~~~~~~~~~l~~~~~~-L~~L~l~~n~~~~~~~i~~~~~~~~~~--~L~~L~l~~n~l~~~~p~~~~----- 198 (207)
|+++ +|.++ .+|..+. .+++ |+.|++++|.++ .+ |. .+.... +|+.|++++|.+.+.+|..+.
T Consensus 358 L~L~--~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~---~l-p~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 358 LNLA--YNQIT-EIPANFC-GFTEQVENLSFAHNKLK---YI-PN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EECC--SSEEE-ECCTTSE-EECTTCCEEECCSSCCS---SC-CS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred EECC--CCccc-cccHhhh-hhcccCcEEEccCCcCc---cc-ch-hhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 9999 99998 7777788 8888 999999999998 88 76 666654 899999999999998888888
Q ss_pred --CCCCCccCC
Q 038163 199 --NMTSLRILD 207 (207)
Q Consensus 199 --~l~~L~~l~ 207 (207)
.+++|+.|+
T Consensus 429 ~~~~~~L~~L~ 439 (636)
T 4eco_A 429 PFKGINVSSIN 439 (636)
T ss_dssp CCCCCCEEEEE
T ss_pred cccCCCCCEEE
Confidence 777877653
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=148.68 Aligned_cols=189 Identities=20% Similarity=0.165 Sum_probs=144.3
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +++.+|.++++|++|++++|.+ ....+..+..+++|++|++++|.++. +|. ...+..+++|++|+++
T Consensus 83 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~-~~~~~~l~~L~~L~l~ 157 (353)
T 2z80_A 83 LTSNGINT-IEEDSFSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPYKT-LGE-TSLFSHLTKLQILRVG 157 (353)
T ss_dssp CTTSCCCE-ECTTTTTTCTTCCEEECCSSCC--SSCCHHHHTTCTTCSEEECTTCCCSS-SCS-SCSCTTCTTCCEEEEE
T ss_pred CCCCccCc-cCHhhcCCCCCCCEEECCCCcC--CcCCHhHhCCCccCCEEECCCCCCcc-cCc-hhhhccCCCCcEEECC
Confidence 57888885 5567789999999999999999 44344458999999999999999986 440 0257789999999999
Q ss_pred CCC-CChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEE
Q 038163 81 DSP-LHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL 154 (207)
Q Consensus 81 ~~~-~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L 154 (207)
+|. +....+..+..+++| ++|.+.+..+. .+..+++|++|+++ +|.++......+. .+++|+.|
T Consensus 158 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~l~~l~~L~~L~l~--~n~l~~~~~~~~~-~~~~L~~L 227 (353)
T 2z80_A 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK-------SLKSIQNVSHLILH--MKQHILLLEIFVD-VTSSVECL 227 (353)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-------TTTTCSEEEEEEEE--CSCSTTHHHHHHH-HTTTEEEE
T ss_pred CCccccccCHHHccCCCCCCEEECCCCCcCccCHH-------HHhccccCCeecCC--CCccccchhhhhh-hcccccEE
Confidence 984 554434555555555 77888877677 88999999999999 9998743333444 68899999
Q ss_pred EccCCccCccc-----------------------------ccchhhhhcCCCCCceEEecCCcCCCCcccc-ccCCCCCc
Q 038163 155 SLSYYTLGINS-----------------------------SETLNQGLCSLVHLQELYIASNDLRGSLPWC-MANMTSLR 204 (207)
Q Consensus 155 ~l~~n~~~~~~-----------------------------~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~ 204 (207)
++++|.++... .+ |. .+..+++|+.|++++|++.. +|.. +..+++|+
T Consensus 228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l-~~-~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~ 304 (353)
T 2z80_A 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MK-LLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQ 304 (353)
T ss_dssp EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH-HH-HHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred ECCCCccccccccccccccccchhhccccccccccCcchhhh-HH-HHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCC
Confidence 99999887100 13 33 57788999999999999984 5544 68888888
Q ss_pred cCC
Q 038163 205 ILD 207 (207)
Q Consensus 205 ~l~ 207 (207)
.|+
T Consensus 305 ~L~ 307 (353)
T 2z80_A 305 KIW 307 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 28
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=9.5e-20 Score=139.93 Aligned_cols=168 Identities=19% Similarity=0.147 Sum_probs=127.4
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
+++.+. .+|... . +.+++|++++|.+ ....+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 22 ~~~~l~-~~p~~~-~--~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 22 QGKSLD-SVPSGI-P--ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSA---GVFDDLTELGTLGLAN 92 (251)
T ss_dssp TTCCCS-SCCSCC-C--TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTT
T ss_pred CCCCcc-ccCCCC-C--CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCH---hHhccCCcCCEEECCC
Confidence 456666 577553 2 6788999999999 56666678899999999999999998777 6788899999999999
Q ss_pred CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163 82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL 156 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l 156 (207)
|.+....+..+..+++| ++|.+++..+. .+..+++|+.|+++ +|.+++..+..+. .+++|+.|++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~L 162 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG-------VFDRLTKLKELRLN--TNQLQSIPAGAFD-KLTNLQTLSL 162 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChh-------HhccCCcccEEECc--CCcCCccCHHHcC-cCcCCCEEEC
Confidence 99874443444444444 77777764444 56788888888888 8888755555666 7888888888
Q ss_pred cCCccCcccccchhhhhcCCCCCceEEecCCcCCCC
Q 038163 157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGS 192 (207)
Q Consensus 157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~ 192 (207)
++|.++ .+ +...+..+++|+.|++++|++...
T Consensus 163 ~~N~l~---~~-~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 163 STNQLQ---SV-PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCS---CC-CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCC---cc-CHHHHhCCCCCCEEEeeCCceeCC
Confidence 888887 54 333677888888888888888754
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=4.1e-20 Score=150.38 Aligned_cols=80 Identities=18% Similarity=0.102 Sum_probs=44.3
Q ss_pred CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163 118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197 (207)
Q Consensus 118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 197 (207)
+..+++|+.|+++ +|.+++..+..+. .+++|+.|++++|.++ .+ +. .+..+++|+.|++++|++. .+|..+
T Consensus 244 l~~l~~L~~L~Ls--~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~---~~-~~-~~~~l~~L~~L~L~~n~l~-~~~~~~ 314 (390)
T 3o6n_A 244 LLNYPGLVEVDLS--YNELEKIMYHPFV-KMQRLERLYISNNRLV---AL-NL-YGQPIPTLKVLDLSHNHLL-HVERNQ 314 (390)
T ss_dssp GGGCTTCSEEECC--SSCCCEEESGGGT-TCSSCCEEECCSSCCC---EE-EC-SSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred HcCCCCccEEECC--CCcCCCcChhHcc-ccccCCEEECCCCcCc---cc-Cc-ccCCCCCCCEEECCCCcce-ecCccc
Confidence 3345556666666 6666554455555 5666666666666665 44 43 4445566666666666655 334444
Q ss_pred cCCCCCccC
Q 038163 198 ANMTSLRIL 206 (207)
Q Consensus 198 ~~l~~L~~l 206 (207)
..+++|+.|
T Consensus 315 ~~l~~L~~L 323 (390)
T 3o6n_A 315 PQFDRLENL 323 (390)
T ss_dssp HHHTTCSEE
T ss_pred cccCcCCEE
Confidence 445555443
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=5.4e-20 Score=142.96 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=98.1
Q ss_pred ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163 15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS 94 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 94 (207)
+..+++|++|++++|.+ .. + ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+....+..+..
T Consensus 59 l~~l~~L~~L~l~~n~l--~~-~-~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKL--HD-I-SALKELTNLTYLILTGNQLQSLPN---GVFDKLTNLKELVLVENQLQSLPDGVFDK 131 (272)
T ss_dssp GGGCTTCCEEECTTSCC--CC-C-GGGTTCTTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred cccCCCCcEEECCCCCC--CC-c-hhhcCCCCCCEEECCCCccCccCh---hHhcCCcCCCEEECCCCcCCccCHHHhcc
Confidence 56677777777777777 22 2 356677777777777777776555 45666777777777777766433333343
Q ss_pred cccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccch
Q 038163 95 IFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETL 169 (207)
Q Consensus 95 l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~ 169 (207)
+++| ++|.+++..+. .+..+++|+.|+++ +|.+++..+..+. .+++|+.|++++|.+. .+ +
T Consensus 132 l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~---~~-~ 197 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSLPKG-------VFDKLTNLTELDLS--YNQLQSLPEGVFD-KLTQLKDLRLYQNQLK---SV-P 197 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCCS---CC-C
T ss_pred CCCCCEEECCCCccCccCHH-------HhccCccCCEEECC--CCCcCccCHHHhc-CCccCCEEECCCCcCC---cc-C
Confidence 3333 55666554333 45666677777777 7766644444445 5667777777777766 33 3
Q ss_pred hhhhcCCCCCceEEecCCcCCCCcc
Q 038163 170 NQGLCSLVHLQELYIASNDLRGSLP 194 (207)
Q Consensus 170 ~~~~~~~~~L~~L~l~~n~l~~~~p 194 (207)
...+..+++|+.|++++|.+.+..|
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HHHHhCCcCCCEEEccCCCccccCc
Confidence 2256666777777777776665433
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=1.1e-19 Score=142.67 Aligned_cols=178 Identities=19% Similarity=0.111 Sum_probs=132.9
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.+. .+|+.+ .+++++|++++|.+ ....+..+..+++|++|++++|.++...+ ...+++|++|++++
T Consensus 18 ~~~~l~-~ip~~~---~~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 18 DKRNLT-ALPPDL---PKDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQV-----DGTLPVLGTLDLSH 86 (290)
T ss_dssp TTSCCS-SCCSCC---CTTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEEC-----CSCCTTCCEEECCS
T ss_pred CCCCCC-cCCCCC---CCCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCcccC-----CCCCCcCCEEECCC
Confidence 456666 577554 26788899999998 55566788888999999999998886533 36788899999998
Q ss_pred CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163 82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL 156 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l 156 (207)
|.+. ..+..+..+++| ++|.+++..+. .+..+++|++|+++ +|.++...+..+. .+++|+.|++
T Consensus 87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L 155 (290)
T 1p9a_G 87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG-------ALRGLGELQELYLK--GNELKTLPPGLLT-PTPKLEKLSL 155 (290)
T ss_dssp SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSS-------TTTTCTTCCEEECT--TSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred CcCC-cCchhhccCCCCCEEECCCCcCcccCHH-------HHcCCCCCCEEECC--CCCCCccChhhcc-cccCCCEEEC
Confidence 8886 444444444444 77777765445 78888899999999 8888855555566 7888999999
Q ss_pred cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
++|.++ .+ +...+..+++|+.|++++|++. .+|..+...++|+.+
T Consensus 156 ~~N~l~---~l-~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 156 ANNNLT---EL-PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200 (290)
T ss_dssp TTSCCS---CC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEE
T ss_pred CCCcCC---cc-CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeE
Confidence 999888 66 5546778889999999999888 467666666666654
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.2e-19 Score=144.46 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=43.7
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTE 59 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 59 (207)
|++|.+.+ +++..|..+++|++|++++|.+ ....|..+..+++|++|++++|.++.
T Consensus 59 L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (330)
T 1xku_A 59 LQNNKITE-IKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKE 114 (330)
T ss_dssp CCSSCCCC-BCTTTTTTCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSB
T ss_pred CCCCcCCE-eChhhhccCCCCCEEECCCCcC--CeeCHHHhcCCCCCCEEECCCCcCCc
Confidence 46777774 5556678888898999988888 45557788888888888888887764
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=5.4e-20 Score=157.56 Aligned_cols=80 Identities=18% Similarity=0.102 Sum_probs=48.2
Q ss_pred CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163 118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197 (207)
Q Consensus 118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 197 (207)
+..+++|+.|+++ +|.+++..|..+. .+++|+.|++++|.++ .+ +. .+..+++|+.|++++|.+. .+|..+
T Consensus 250 l~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~---~l-~~-~~~~l~~L~~L~Ls~N~l~-~i~~~~ 320 (597)
T 3oja_B 250 LLNYPGLVEVDLS--YNELEKIMYHPFV-KMQRLERLYISNNRLV---AL-NL-YGQPIPTLKVLDLSHNHLL-HVERNQ 320 (597)
T ss_dssp GGGCTTCSEEECC--SSCCCEEESGGGT-TCSSCCEEECTTSCCC---EE-EC-SSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred hccCCCCCEEECC--CCccCCCCHHHhc-CccCCCEEECCCCCCC---CC-Cc-ccccCCCCcEEECCCCCCC-ccCccc
Confidence 4455666666666 6666655555555 6666666666666665 45 44 4555666666666666666 345555
Q ss_pred cCCCCCccC
Q 038163 198 ANMTSLRIL 206 (207)
Q Consensus 198 ~~l~~L~~l 206 (207)
..+++|+.|
T Consensus 321 ~~l~~L~~L 329 (597)
T 3oja_B 321 PQFDRLENL 329 (597)
T ss_dssp HHHTTCSEE
T ss_pred ccCCCCCEE
Confidence 555555544
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=3.3e-21 Score=170.65 Aligned_cols=174 Identities=13% Similarity=0.154 Sum_probs=102.6
Q ss_pred CccCceecCccccCCCCCcEEecCCCcccCCC-----------------cchhhhc--CCCCCCEEEcCCCcCCcccccc
Q 038163 4 NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGS-----------------KLLQSIG--SFSSLNSLYLSSNNFTETVTIT 64 (207)
Q Consensus 4 n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~ 64 (207)
|.+.+ +|+. +.++++|++|++++|.+ .+ .+|..++ .+++|++|++++|.+.+.+|
T Consensus 435 N~L~~-IP~~-l~~L~~L~~L~Ls~N~L--sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-- 508 (876)
T 4ecn_A 435 NRITF-ISKA-IQRLTKLQIIYFANSPF--TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-- 508 (876)
T ss_dssp CEEEE-ECGG-GGGCTTCCEEEEESCCC--CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC--
T ss_pred Ccccc-hhHH-HhcCCCCCEEECcCCcC--CCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh--
Confidence 45554 5533 56666666666666666 23 2566555 66666666666666666666
Q ss_pred hhcccCCCCccEEEcCCCC-CCh-HHHHhhcccc-------cc-----cCCcccceeccccccccCCCCCCCccceeccc
Q 038163 65 TQELHNFTNMEYLKLDDSP-LHI-SLLQSIASIF-------PL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDME 130 (207)
Q Consensus 65 ~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l~-------~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 130 (207)
..+.++++|++|++++|. +++ ..|..++.+. +| ++|.+. .+|.. +.+.++++|+.|+++
T Consensus 509 -~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~-----~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 509 -DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS-----ASLQKMVKLGLLDCV 581 (876)
T ss_dssp -GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH-----HHHTTCTTCCEEECT
T ss_pred -HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh-----hhhhcCCCCCEEECC
Confidence 566666666666666665 655 4555444332 33 555555 33310 025566666666766
Q ss_pred ccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCC-CceEEecCCcCCCCccccccCCC
Q 038163 131 FMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVH-LQELYIASNDLRGSLPWCMANMT 201 (207)
Q Consensus 131 ~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~l~ 201 (207)
+|.++ .+| .+. .+++|+.|++++|.+. .+ |. .+..+++ |+.|++++|.+. .+|..+..++
T Consensus 582 --~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~---~l-p~-~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 582 --HNKVR-HLE-AFG-TNVKLTDLKLDYNQIE---EI-PE-DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp --TSCCC-BCC-CCC-TTSEESEEECCSSCCS---CC-CT-TSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred --CCCcc-cch-hhc-CCCcceEEECcCCccc---cc-hH-HHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 66666 455 455 5666677777766666 56 55 5666666 777777777766 5565555443
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.2e-19 Score=144.63 Aligned_cols=186 Identities=18% Similarity=0.195 Sum_probs=108.3
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc----------------
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT---------------- 64 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------------- 64 (207)
|++|.+. .+++..|.++++|++|++++|.+ ....|..+..+++|++|++++|.++...+..
T Consensus 61 l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~ 137 (332)
T 2ft3_A 61 LQNNDIS-ELRKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRK 137 (332)
T ss_dssp CCSSCCC-EECTTTTTTCTTCCEEECCSSCC--CEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCC
T ss_pred CCCCcCC-ccCHhHhhCCCCCcEEECCCCcc--CccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCc
Confidence 4566666 35555677788888888888877 4445667777777777777777666321100
Q ss_pred --hhcccCCCCccEEEcCCCCCCh--HHHHhhc--ccccc--cCCcccceeccc-----cc----------cccCCCCCC
Q 038163 65 --TQELHNFTNMEYLKLDDSPLHI--SLLQSIA--SIFPL--LKNLSMIGCEVN-----GV----------IRGQDFPHS 121 (207)
Q Consensus 65 --~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~--~l~~L--~~n~~~~~~~~~-----~~----------~~~~~~~~~ 121 (207)
...+..+++|++|++++|.+.. ..+..+. .++.| ++|.+++ +|.. .. ...+.+..+
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred cCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCccccCCCCEEECCCCcCCccCHHHhcCC
Confidence 0224455566666666665542 1122221 11111 2222222 1110 00 000156667
Q ss_pred CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccccc
Q 038163 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMA 198 (207)
Q Consensus 122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 198 (207)
++|+.|+++ +|.+++..+..+. .+++|+.|++++|.++ .+ |. .+..+++|+.|++++|++.+..+..+.
T Consensus 217 ~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~---~l-p~-~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 217 SKLYRLGLG--HNQIRMIENGSLS-FLPTLRELHLDNNKLS---RV-PA-GLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp TTCSCCBCC--SSCCCCCCTTGGG-GCTTCCEEECCSSCCC---BC-CT-TGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred CCCCEEECC--CCcCCcCChhHhh-CCCCCCEEECCCCcCe---ec-Ch-hhhcCccCCEEECCCCCCCccChhHcc
Confidence 777777777 7777755555666 7777888888777776 67 66 677777788888888877755444444
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=7.7e-20 Score=148.80 Aligned_cols=189 Identities=16% Similarity=0.142 Sum_probs=93.5
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.+. .+++..|..+++|++|++++|.+ ....|..+..+++|++|++++|.++...+ ..+..+++|++|++++
T Consensus 77 ~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~~ 150 (390)
T 3o6n_A 77 NDLQIE-EIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLSMSN 150 (390)
T ss_dssp TTSCCC-EECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCS
T ss_pred CCCccc-ccChhhccCCCCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCH---HHhcCCCCCcEEECCC
Confidence 444544 23444455555555555555555 33334445555556666666555554333 2345555666666666
Q ss_pred CCCChHHHHhhcccccc-----cCCcccceecc----cccccc-----CCC---------------------CCCCccce
Q 038163 82 SPLHISLLQSIASIFPL-----LKNLSMIGCEV----NGVIRG-----QDF---------------------PHSKSLEH 126 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~----~~~~~~-----~~~---------------------~~~~~L~~ 126 (207)
|.+....+..+..+++| ++|.+++.-.. ...+++ ..+ ...++|+.
T Consensus 151 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 230 (390)
T 3o6n_A 151 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 230 (390)
T ss_dssp SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCE
T ss_pred CccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccE
Confidence 65553333334333333 44444332100 000000 000 00123444
Q ss_pred ecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 127 L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
|+++ +|.+++. ..+. .+++|+.|++++|.+. +.. +. .+..+++|+.|++++|++.+ +|..+..+++|+.|
T Consensus 231 L~l~--~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~--~~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 231 LKLQ--HNNLTDT--AWLL-NYPGLVEVDLSYNELE--KIM-YH-PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 300 (390)
T ss_dssp EECC--SSCCCCC--GGGG-GCTTCSEEECCSSCCC--EEE-SG-GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEE
T ss_pred EECC--CCCCccc--HHHc-CCCCccEEECCCCcCC--CcC-hh-HccccccCCEEECCCCcCcc-cCcccCCCCCCCEE
Confidence 4444 4444431 2344 5666777777777766 333 44 66667777777777777664 45555566666654
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=3.7e-19 Score=138.21 Aligned_cols=179 Identities=20% Similarity=0.230 Sum_probs=142.9
Q ss_pred CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163 3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS 82 (207)
Q Consensus 3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~ 82 (207)
++.+...+. ...++++++|++++|.+ ..++ .+..+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 28 ~~~~~~~~~---~~~l~~L~~L~l~~~~i---~~~~-~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 28 KKSVTDAVT---QNELNSIDQIIANNSDI---KSVQ-GIQYLPNVRYLALGGNKLHDI-----SALKELTNLTYLILTGN 95 (272)
T ss_dssp CSCTTSEEC---HHHHTTCCEEECTTSCC---CCCT-TGGGCTTCCEEECTTSCCCCC-----GGGTTCTTCCEEECTTS
T ss_pred Ccccccccc---cccccceeeeeeCCCCc---cccc-ccccCCCCcEEECCCCCCCCc-----hhhcCCCCCCEEECCCC
Confidence 344444333 46789999999999999 3333 578899999999999998863 37889999999999999
Q ss_pred CCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163 83 PLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS 157 (207)
Q Consensus 83 ~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~ 157 (207)
.+....+..+..+++| .+|.+.+..+. .+..+++|++|+++ +|.+++..+..+. .+++|+.|+++
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~L~--~n~l~~~~~~~~~-~l~~L~~L~l~ 165 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDG-------VFDKLTNLTYLNLA--HNQLQSLPKGVFD-KLTNLTELDLS 165 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECC
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHH-------HhccCCCCCEEECC--CCccCccCHHHhc-cCccCCEEECC
Confidence 9885544445555555 78888875555 68899999999999 9999866666667 88999999999
Q ss_pred CCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
+|.++ .+ +...+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 166 ~n~l~---~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 166 YNQLQ---SL-PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp SSCCC---CC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcC---cc-CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence 99998 55 443678899999999999999987777788899988764
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=5.8e-20 Score=157.21 Aligned_cols=185 Identities=17% Similarity=0.171 Sum_probs=114.6
Q ss_pred CCCccCcee-cCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 2 SFNEINNLV-VPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 2 ~~n~~~~~~-p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
++|.+.+.. .+..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+.+..|. ..+..+++|++|+++
T Consensus 358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGA---IIMSANFMGLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDIS 432 (606)
T ss_dssp CSSCEEEEEECCHHHHCCSCCCEEECCSCSE---EEECCCCTTCTTCCEEECTTSEEESTTTT--TTTTTCTTCCEEECT
T ss_pred cCCccCCCcchhhhhccCCcccEeECCCCcc---ccchhhccCCCCCCeeECCCCccCCccCh--hhhhccccCCEEECc
Confidence 445555431 023345666666666666666 33455566666666666666666654431 245566777777777
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccc-eeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMI-GCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL 154 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L 154 (207)
+|.+.+..+..+..+++| ++|.+.+ ..|. .+..+++|+.|+++ +|.+++..+..+. .+++|+.|
T Consensus 433 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~Ls--~n~l~~~~~~~~~-~l~~L~~L 502 (606)
T 3vq2_A 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN-------VFANTTNLTFLDLS--KCQLEQISWGVFD-TLHRLQLL 502 (606)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECT--TSCCCEECTTTTT-TCTTCCEE
T ss_pred CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH-------hhccCCCCCEEECC--CCcCCccChhhhc-ccccCCEE
Confidence 777665555555544444 6666665 3455 66777777777777 7777766666666 67777777
Q ss_pred EccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCC-CCccC
Q 038163 155 SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMT-SLRIL 206 (207)
Q Consensus 155 ~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~l 206 (207)
++++|.++ +.+ |. .+..+++|+.|++++|++. .+|..+..++ +|+.+
T Consensus 503 ~Ls~N~l~--~~~-~~-~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 503 NMSHNNLL--FLD-SS-HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF 550 (606)
T ss_dssp ECCSSCCS--CEE-GG-GTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE
T ss_pred ECCCCcCC--CcC-HH-HccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEE
Confidence 77777776 444 54 6777777777777777776 4565566665 36554
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=3.7e-19 Score=141.83 Aligned_cols=188 Identities=13% Similarity=0.164 Sum_probs=128.0
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccC-------------------CCcchhhhcCCCCCCEEEcCCCcCCc--
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRD-------------------GSKLLQSIGSFSSLNSLYLSSNNFTE-- 59 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~-------------------~~~~~~~~~~l~~L~~L~l~~n~~~~-- 59 (207)
|++|.+.+ +++..|.++++|++|++++|.+.. ....+..+..+++|++|++++|.++.
T Consensus 85 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 85 LVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp CCSSCCCE-ECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CCCCccCc-cCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence 35666664 333556777777777777776521 11122346778888888888888753
Q ss_pred ccccchhcccCC--------------------CCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccccccc
Q 038163 60 TVTITTQELHNF--------------------TNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIR 114 (207)
Q Consensus 60 ~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~ 114 (207)
..+ ..+..+ ++|++|++++|.+....+..+..+++| ++|.+.+..+.
T Consensus 164 ~~~---~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~----- 235 (332)
T 2ft3_A 164 FEP---GAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG----- 235 (332)
T ss_dssp SCT---TSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT-----
T ss_pred CCc---ccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh-----
Confidence 333 233333 356666666666554433444444444 66777665554
Q ss_pred cCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcC------CCCCceEEecCCc
Q 038163 115 GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCS------LVHLQELYIASND 188 (207)
Q Consensus 115 ~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~------~~~L~~L~l~~n~ 188 (207)
.+..+++|+.|+++ +|.++ .+|..+. .+++|+.|++++|.++ .+ +...+.. ..+++.+++++|+
T Consensus 236 --~~~~l~~L~~L~L~--~N~l~-~lp~~l~-~l~~L~~L~l~~N~l~---~~-~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 236 --SLSFLPTLRELHLD--NNKLS-RVPAGLP-DLKLLQVVYLHTNNIT---KV-GVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp --GGGGCTTCCEEECC--SSCCC-BCCTTGG-GCTTCCEEECCSSCCC---BC-CTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred --HhhCCCCCCEEECC--CCcCe-ecChhhh-cCccCCEEECCCCCCC---cc-ChhHccccccccccccccceEeecCc
Confidence 67889999999999 99998 6777788 8999999999999998 55 4324543 4678999999999
Q ss_pred CC--CCccccccCCCCCccCC
Q 038163 189 LR--GSLPWCMANMTSLRILD 207 (207)
Q Consensus 189 l~--~~~p~~~~~l~~L~~l~ 207 (207)
+. +..|..|..+++|+.++
T Consensus 306 ~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 306 VPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp SCGGGSCGGGGTTBCCSTTEE
T ss_pred ccccccCcccccccchhhhhh
Confidence 87 55678888899888763
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.1e-19 Score=155.72 Aligned_cols=189 Identities=15% Similarity=0.131 Sum_probs=99.0
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.+.+ +|+..|..+++|++|++++|.+ ....|..|+.+++|++|++++|.++...+ ..+..+++|++|++++
T Consensus 83 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 83 NDLQIEE-IDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLSMSN 156 (597)
T ss_dssp TTSCCCE-ECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCS
T ss_pred CCCCCCC-CChHHhcCCCCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCCH---HHhccCCCCCEEEeeC
Confidence 4455553 3334455666666666666665 33344445556666666666666554433 3345566666666666
Q ss_pred CCCChHHHHhhcccccc-----cCCcccceecc----cccccc-----CCCC---------------------CCCccce
Q 038163 82 SPLHISLLQSIASIFPL-----LKNLSMIGCEV----NGVIRG-----QDFP---------------------HSKSLEH 126 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~----~~~~~~-----~~~~---------------------~~~~L~~ 126 (207)
|.+.+..+..+..+++| ++|.+.+.-.. ...+++ ..+. ...+|+.
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~ 236 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 236 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCE
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCE
Confidence 66554444444444443 44444432100 000000 0000 0123444
Q ss_pred ecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 127 L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
|+++ +|.+++ +..+. .+++|+.|++++|.+. +.. |. .+..+++|+.|++++|.+.+ +|..+..+++|+.|
T Consensus 237 L~L~--~n~l~~--~~~l~-~l~~L~~L~Ls~N~l~--~~~-~~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 306 (597)
T 3oja_B 237 LKLQ--HNNLTD--TAWLL-NYPGLVEVDLSYNELE--KIM-YH-PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 306 (597)
T ss_dssp EECC--SSCCCC--CGGGG-GCTTCSEEECCSSCCC--EEE-SG-GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEE
T ss_pred EECC--CCCCCC--Chhhc-cCCCCCEEECCCCccC--CCC-HH-HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEE
Confidence 4455 444443 23445 6677777777777776 444 54 67777777777777777764 45555666676655
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=6.3e-20 Score=162.50 Aligned_cols=162 Identities=13% Similarity=0.145 Sum_probs=136.7
Q ss_pred eecCcccc--CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCc-CCc-ccccchhccc-------CCCCccEE
Q 038163 9 LVVPQGYN--GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNN-FTE-TVTITTQELH-------NFTNMEYL 77 (207)
Q Consensus 9 ~~p~~~~~--~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~-------~l~~L~~L 77 (207)
.+|+. ++ ++++|++|++++|.+ .+.+|..+..+++|++|++++|. +++ .+| ..+. .+++|++|
T Consensus 480 ~iP~~-l~f~~L~~L~~L~Ls~N~l--~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP---~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 480 YENEE-LSWSNLKDLTDVELYNCPN--MTQLPDFLYDLPELQSLNIACNRGISAAQLK---ADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp HTTSC-CCGGGCTTCCEEEEESCTT--CCSCCGGGGGCSSCCEEECTTCTTSCHHHHH---HHHHHHHHCTTTTTTCCEE
T ss_pred cCChh-hhhccCCCCCEEECcCCCC--CccChHHHhCCCCCCEEECcCCCCcccccch---HHHHhhhhcccccCCccEE
Confidence 48866 46 999999999999998 68899999999999999999998 887 777 4443 45599999
Q ss_pred EcCCCCCChHHHH--hhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCC
Q 038163 78 KLDDSPLHISLLQ--SIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSS 150 (207)
Q Consensus 78 ~l~~~~~~~~~~~--~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~ 150 (207)
++++|.+. .++. .+..+++| ++|.+. .+| .+..+++|+.|+++ +|.++ .+|..+. .+++
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--------~~~~L~~L~~L~Ls--~N~l~-~lp~~l~-~l~~ 619 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--------AFGTNVKLTDLKLD--YNQIE-EIPEDFC-AFTD 619 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--------CCCTTSEESEEECC--SSCCS-CCCTTSC-EECT
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--------hhcCCCcceEEECc--CCccc-cchHHHh-hccc
Confidence 99999998 6666 67776666 778877 455 67889999999999 99998 7787787 8888
Q ss_pred -ccEEEccCCccCcccccchhhhhcCCC--CCceEEecCCcCCCCccc
Q 038163 151 -LKYLSLSYYTLGINSSETLNQGLCSLV--HLQELYIASNDLRGSLPW 195 (207)
Q Consensus 151 -L~~L~l~~n~~~~~~~i~~~~~~~~~~--~L~~L~l~~n~l~~~~p~ 195 (207)
|+.|++++|.+. .+ |. .+.... +|+.|++++|++.+.+|.
T Consensus 620 ~L~~L~Ls~N~L~---~l-p~-~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 620 QVEGLGFSHNKLK---YI-PN-IFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp TCCEEECCSSCCC---SC-CS-CCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred cCCEEECcCCCCC---cC-ch-hhhccccCCCCEEECcCCcCCCcccc
Confidence 999999999998 88 76 776664 499999999999987664
No 42
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=8.3e-19 Score=134.66 Aligned_cols=146 Identities=15% Similarity=0.143 Sum_probs=122.3
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +++..|.++++|++|++++|.+ ....+..+..+++|++|++++|.++...+ ..+..+++|++|+++
T Consensus 42 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 42 LQSTGLAT-LSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLPL---GVFDHLTQLDKLYLG 115 (251)
T ss_dssp CTTSCCCC-CCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECC
T ss_pred ccCCCcCc-cCHhHhcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcccccCh---hHhcccCCCCEEEcC
Confidence 57888886 5556789999999999999999 56666778999999999999999998777 678899999999999
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.+....+..+..+++| ++|.+.+..+. .+..+++|++|+++ +|.+++..+..+. .+++|+.|+
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~ 185 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG-------AFDKLTNLQTLSLS--TNQLQSVPHGAFD-RLGKLQTIT 185 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCSCCCTTTTT-TCTTCCEEE
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHH-------HcCcCcCCCEEECC--CCcCCccCHHHHh-CCCCCCEEE
Confidence 999885444444445544 88888875555 78899999999999 9999866666777 899999999
Q ss_pred ccCCccC
Q 038163 156 LSYYTLG 162 (207)
Q Consensus 156 l~~n~~~ 162 (207)
+++|.+.
T Consensus 186 l~~N~~~ 192 (251)
T 3m19_A 186 LFGNQFD 192 (251)
T ss_dssp CCSCCBC
T ss_pred eeCCcee
Confidence 9999997
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=5.7e-20 Score=153.94 Aligned_cols=184 Identities=18% Similarity=0.093 Sum_probs=125.6
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc-h------------hc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT-T------------QE 67 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~------------~~ 67 (207)
|++|.+.+ +++..|..+++|++|++++|.+ ....| +..+++|++|++++|.+++..+.. + ..
T Consensus 41 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~ 115 (487)
T 3oja_A 41 LSGNPLSQ-ISAADLAPFTKLELLNLSSNVL--YETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS 115 (487)
T ss_dssp CCSSCCCC-CCGGGGTTCTTCCEEECTTSCC--EEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEE
T ss_pred eeCCcCCC-CCHHHHhCCCCCCEEEeeCCCC--CCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCC
Confidence 57788886 5556689999999999999998 33333 788888888888888776543200 0 00
Q ss_pred ccCCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCC-CCCccceecccccccccCchhH
Q 038163 68 LHNFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFP-HSKSLEHLDMEFMRIALNTSFL 141 (207)
Q Consensus 68 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~n~~~~~~~ 141 (207)
...+++|++|++++|.+.+..+..+..+++| ++|.+++..|. .+. .+++|+.|+++ +|.+++. +
T Consensus 116 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~l~~~l~~L~~L~Ls--~N~l~~~-~ 185 (487)
T 3oja_A 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-------ELAASSDTLEHLNLQ--YNFIYDV-K 185 (487)
T ss_dssp ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-------GGGGGTTTCCEEECT--TSCCCEE-E
T ss_pred ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH-------HHhhhCCcccEEecC--CCccccc-c
Confidence 1234566777777777665545444444444 66777665555 554 56778888888 7777643 2
Q ss_pred HHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 142 QIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 142 ~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
... .+++|+.|++++|.++ .+ |. .+..+++|+.|++++|.+.+ +|..+..+++|+.++
T Consensus 186 -~~~-~l~~L~~L~Ls~N~l~---~~-~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 186 -GQV-VFAKLKTLDLSSNKLA---FM-GP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD 243 (487)
T ss_dssp -CCC-CCTTCCEEECCSSCCC---EE-CG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred -ccc-cCCCCCEEECCCCCCC---CC-CH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEE
Confidence 122 4677888888888887 56 55 67788888888888888884 677777777777653
No 44
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=3e-19 Score=142.26 Aligned_cols=186 Identities=16% Similarity=0.167 Sum_probs=143.9
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCc-chhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSK-LLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKL 79 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l 79 (207)
+++|.+.+..+ . +..+++|++|++++|.+ ... ++..+..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 77 l~~n~l~~~~~-~-~~~~~~L~~L~L~~~~l--~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~---~~l~~~~~L~~L~L 149 (336)
T 2ast_B 77 CPRSFMDQPLA-E-HFSPFRVQHMDLSNSVI--EVSTLHGILSQCSKLQNLSLEGLRLSDPIV---NTLAKNSNLVRLNL 149 (336)
T ss_dssp CTTCEECSCCC-S-CCCCBCCCEEECTTCEE--CHHHHHHHHTTBCCCSEEECTTCBCCHHHH---HHHTTCTTCSEEEC
T ss_pred cCCccccccch-h-hccCCCCCEEEccCCCc--CHHHHHHHHhhCCCCCEEeCcCcccCHHHH---HHHhcCCCCCEEEC
Confidence 45677776554 4 46799999999999999 444 88889999999999999999998777 78888999999999
Q ss_pred CCC-CCChH-HHHhhcccccc-----cCC-cccce-eccccccccCCCCCCC-ccceeccccccc--ccC-chhHHHHHh
Q 038163 80 DDS-PLHIS-LLQSIASIFPL-----LKN-LSMIG-CEVNGVIRGQDFPHSK-SLEHLDMEFMRI--ALN-TSFLQIISE 146 (207)
Q Consensus 80 ~~~-~~~~~-~~~~l~~l~~L-----~~n-~~~~~-~~~~~~~~~~~~~~~~-~L~~L~l~~~~n--~~~-~~~~~~l~~ 146 (207)
++| .+++. .+..+..+++| ++| .+++. ++. .+..++ +|++|+++ +| .++ ..++..+.
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~~l~~~L~~L~l~--~~~~~~~~~~l~~~~~- 219 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-------AVAHVSETITQLNLS--GYRKNLQKSDLSTLVR- 219 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-------HHHHSCTTCCEEECC--SCGGGSCHHHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-------HHHhcccCCCEEEeC--CCcccCCHHHHHHHHh-
Confidence 999 68764 44445555554 667 66653 344 567788 99999999 88 565 45567777
Q ss_pred cCCCccEEEccCCc-cCcccccchhhhhcCCCCCceEEecCCc-CCCCccccccCCCCCccCC
Q 038163 147 SMSSLKYLSLSYYT-LGINSSETLNQGLCSLVHLQELYIASND-LRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 147 ~~~~L~~L~l~~n~-~~~~~~i~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~l~ 207 (207)
.+++|+.|++++|. ++ +.. +. .+..+++|+.|++++|. +.......+..+++|+.|+
T Consensus 220 ~~~~L~~L~l~~~~~l~--~~~-~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLK--NDC-FQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp HCTTCSEEECTTCTTCC--GGG-GG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred hCCCCCEEeCCCCCcCC--HHH-HH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 89999999999999 65 455 55 78889999999999996 3322223577888888764
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=3.7e-19 Score=154.15 Aligned_cols=184 Identities=20% Similarity=0.212 Sum_probs=96.9
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcch-hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLL-QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
++|.+.+. ++.+|..+++|++|++++|.+ ...++ ..+..+++|++|++++|.+....+ ..+..++.|++|+++
T Consensus 389 ~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 389 TKNKISKI-ESDAFSWLGHLEVLDLGLNEI--GQELTGQEWRGLENIFEIYLSYNKYLQLTR---NSFALVPSLQRLMLR 462 (680)
T ss_dssp TTSCCCEE-CTTTTTTCTTCCEEECCSSCC--EEECCSGGGTTCTTCCEEECCSCSEEECCT---TTTTTCTTCCEEECT
T ss_pred CCCCCCeE-ChhhhhCCCCCCEEeCCCCcC--ccccCcccccCcccccEEecCCCCcceeCh---hhhhcCcccccchhc
Confidence 55666643 345577788888888888877 34444 466777777777777777665544 455555556666665
Q ss_pred CCCCC--hHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHH--------HHH
Q 038163 81 DSPLH--ISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQ--------IIS 145 (207)
Q Consensus 81 ~~~~~--~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~--------~l~ 145 (207)
+|.+. +..+..+..+++| ++|.+++..+. .+..+++|+.|+++ +|.+++.... .+.
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~~~~~~~~~ 533 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD-------MLEGLEKLEILDLQ--HNNLARLWKHANPGGPIYFLK 533 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCGGGGSTTSTTSCCCTTT
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChh-------hhccccccCEEeCC--CCCccccchhhccCCcchhhc
Confidence 55543 1223333333333 44555443333 44555555555555 5554422110 123
Q ss_pred hcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCcc
Q 038163 146 ESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 205 (207)
Q Consensus 146 ~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 205 (207)
.+++|+.|++++|.++ .+ |...+..+++|+.|++++|++.+..+..|..+++|+.
T Consensus 534 -~l~~L~~L~L~~N~l~---~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 534 -GLSHLHILNLESNGFD---EI-PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp -TCTTCCEEECCSSCCC---CC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred -CCCCCCEEECCCCCCC---CC-CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 4445555555555554 44 3323445555555555555555433344444444443
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1.7e-19 Score=156.34 Aligned_cols=194 Identities=16% Similarity=0.122 Sum_probs=126.3
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCC--cccccchhcccCCCCccEEE
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFT--ETVTITTQELHNFTNMEYLK 78 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~l~~L~~L~ 78 (207)
|++|.+.+.+|+..+.++++|++|++++|.+ ....+..+..++.|+.|++++|.+. +..| ..+..+++|++|+
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p---~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKY--LQLTRNSFALVPSLQRLMLRRVALKNVDSSP---SPFQPLRNLTILD 486 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSE--EECCTTTTTTCTTCCEEECTTSCCBCTTCSS---CTTTTCTTCCEEE
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCc--ceeChhhhhcCcccccchhccccccccccCC---cccccCCCCCEEE
Confidence 5788888888888889999999999999998 4555667777778888888777765 3455 5667777788888
Q ss_pred cCCCCCChHHHHhhcccccc-----cCCcccceeccc-cccccCCCCCCCccceecccccccccCchhHHHHHhcCCCcc
Q 038163 79 LDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVN-GVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLK 152 (207)
Q Consensus 79 l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~ 152 (207)
+++|.++...+..+..+++| ++|.+++..+.. .......+..+++|+.|+++ +|.++...+..+. .+++|+
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~--~N~l~~i~~~~~~-~l~~L~ 563 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE--SNGFDEIPVEVFK-DLFELK 563 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCC
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC--CCCCCCCCHHHcc-cccCcc
Confidence 87777764434444444444 666665431110 00000035667777777777 7777633333455 677777
Q ss_pred EEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccccc-CCCCCccC
Q 038163 153 YLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMA-NMTSLRIL 206 (207)
Q Consensus 153 ~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~l 206 (207)
.|++++|.++ .+ +...+..+++|+.|++++|++.+..+..+. .+++|+.+
T Consensus 564 ~L~Ls~N~l~---~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l 614 (680)
T 1ziw_A 564 IIDLGLNNLN---TL-PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614 (680)
T ss_dssp EEECCSSCCC---CC-CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred eeECCCCCCC---cC-CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence 7777777776 55 443566777777777777777765555554 45555543
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=7.7e-20 Score=139.37 Aligned_cols=182 Identities=11% Similarity=0.059 Sum_probs=138.1
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCc-ccCCCcchhhhcCCCCCCEEEcCC-CcCCcccccchhcccCCCCccEEE
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVG-VRDGSKLLQSIGSFSSLNSLYLSS-NNFTETVTITTQELHNFTNMEYLK 78 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~l~~L~~L~ 78 (207)
|++|.+. .+|+..|..+++|++|++++|. + ....+..|..+++|++|++++ |.++...+ ..+..+++|++|+
T Consensus 38 l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~---~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 38 LIETHLR-TIPSHAFSNLPNISRIYVSIDVTL--QQLESHSFYNLSKVTHIEIRNTRNLTYIDP---DALKELPLLKFLG 111 (239)
T ss_dssp EESCCCS-EECTTTTTTCTTCCEEEEECCSSC--CEECTTTEESCTTCCEEEEEEETTCCEECT---TSEECCTTCCEEE
T ss_pred EeCCcce-EECHHHccCCCCCcEEeCCCCCCc--ceeCHhHcCCCcCCcEEECCCCCCeeEcCH---HHhCCCCCCCEEe
Confidence 3577887 5777778999999999999997 7 333344788999999999998 89987766 6788899999999
Q ss_pred cCCCCCChHHHH--hhcccc---cc--cCC-cccceeccccccccCCCCCCCccc-eecccccccccCchhHHHHHhcCC
Q 038163 79 LDDSPLHISLLQ--SIASIF---PL--LKN-LSMIGCEVNGVIRGQDFPHSKSLE-HLDMEFMRIALNTSFLQIISESMS 149 (207)
Q Consensus 79 l~~~~~~~~~~~--~l~~l~---~L--~~n-~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~n~~~~~~~~~l~~~~~ 149 (207)
+++|.+.+ .+. .+..++ .| ++| .+.+..+. .+..+++|+ .|+++ +|.++ .++.... ..+
T Consensus 112 l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~-------~~~~l~~L~~~L~l~--~n~l~-~i~~~~~-~~~ 179 (239)
T 2xwt_C 112 IFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVN-------AFQGLCNETLTLKLY--NNGFT-SVQGYAF-NGT 179 (239)
T ss_dssp EEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTT-------TTTTTBSSEEEEECC--SCCCC-EECTTTT-TTC
T ss_pred CCCCCCcc-ccccccccccccccEEECCCCcchhhcCcc-------cccchhcceeEEEcC--CCCCc-ccCHhhc-CCC
Confidence 99998874 332 223333 33 666 66654444 688999999 99999 99998 4554433 347
Q ss_pred CccEEEccCCc-cCcccccchhhhhcCC-CCCceEEecCCcCCCCccccccCCCCCc
Q 038163 150 SLKYLSLSYYT-LGINSSETLNQGLCSL-VHLQELYIASNDLRGSLPWCMANMTSLR 204 (207)
Q Consensus 150 ~L~~L~l~~n~-~~~~~~i~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 204 (207)
+|+.|++++|. ++ .+ +...+..+ ++|+.|++++|++.+..+..+..++.|.
T Consensus 180 ~L~~L~L~~n~~l~---~i-~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~ 232 (239)
T 2xwt_C 180 KLDAVYLNKNKYLT---VI-DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232 (239)
T ss_dssp EEEEEECTTCTTCC---EE-CTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEE
T ss_pred CCCEEEcCCCCCcc---cC-CHHHhhccccCCcEEECCCCccccCChhHhccCceee
Confidence 89999999995 87 66 54478888 9999999999999865445555555543
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=7.7e-20 Score=156.42 Aligned_cols=175 Identities=22% Similarity=0.161 Sum_probs=139.5
Q ss_pred ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHH-Hhhc
Q 038163 15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLL-QSIA 93 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~ 93 (207)
+..+++|++|++++|.++.....+..+..+++|++|++++|.++. .| ..+..+++|++|++++|.+.+..+ ..+.
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS---ANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC---CCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch---hhccCCCCCCeeECCCCccCCccChhhhh
Confidence 467778888888888873222236778888888888888888775 44 477888899999999988775544 3455
Q ss_pred ccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCch-hHHHHHhcCCCccEEEccCCccCccccc
Q 038163 94 SIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTS-FLQIISESMSSLKYLSLSYYTLGINSSE 167 (207)
Q Consensus 94 ~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~-~~~~l~~~~~~L~~L~l~~n~~~~~~~i 167 (207)
.+++| ++|.+.+..|. .+..+++|+.|+++ +|.+++. .+..+. .+++|+.|++++|.++ +..
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~--~~~ 489 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDG-------IFLGLTSLNTLKMA--GNSFKDNTLSNVFA-NTTNLTFLDLSKCQLE--QIS 489 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTT-------TTTTCTTCCEEECT--TCEEGGGEECSCCT-TCTTCCEEECTTSCCC--EEC
T ss_pred ccccCCEEECcCCCCCccchh-------hhcCCCCCCEEECC--CCcCCCcchHHhhc-cCCCCCEEECCCCcCC--ccC
Confidence 55554 77888777776 88899999999999 9999864 566777 8899999999999998 444
Q ss_pred chhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 168 TLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 168 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
|. .+..+++|+.|++++|++.+..|..+..+++|+.||
T Consensus 490 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 490 -WG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp -TT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred -hh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 55 889999999999999999988899999999998764
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=2.9e-19 Score=151.12 Aligned_cols=172 Identities=19% Similarity=0.209 Sum_probs=116.8
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +++..|.++++|++|++++|.+ ....|..|..+++|++|++++|.+++..| ..+..+++|++|+++
T Consensus 33 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 33 LSFNKITY-IGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSS---SWFGPLSSLKYLNLM 106 (549)
T ss_dssp CCSSCCCE-ECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCH---HHHTTCTTCCEEECT
T ss_pred CcCCccCc-cChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCH---HHhccCCCCcEEECC
Confidence 46677764 4445567788888888888877 44455677777888888888887777666 557777778888888
Q ss_pred CCCCCh-HHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEE
Q 038163 81 DSPLHI-SLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL 154 (207)
Q Consensus 81 ~~~~~~-~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L 154 (207)
+|.+.. ..+..+..+++| ++|...+.++.. .+.++++|++|+++ +|.+++..+..+. .+++|+.|
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~------~~~~l~~L~~L~L~--~n~l~~~~~~~l~-~l~~L~~L 177 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI------DFAGLTSLNELEIK--ALSLRNYQSQSLK-SIRDIHHL 177 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT------TTTTCCEEEEEEEE--ETTCCEECTTTTT-TCSEEEEE
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHh------hhhcccccCeeecc--CCcccccChhhhh-ccccCceE
Confidence 877764 223344444444 555533334321 67777788888888 8877766676666 77777777
Q ss_pred EccCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163 155 SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 155 ~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~ 191 (207)
+++.|.+. .+ +...+..+++|+.|++++|.+.+
T Consensus 178 ~l~~n~~~---~~-~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 178 TLHLSESA---FL-LEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEECSBST---TH-HHHHHHSTTTBSEEEEESCBCTT
T ss_pred ecccCccc---cc-chhhHhhcccccEEEccCCcccc
Confidence 77777776 55 54234567888888888888775
No 50
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=6.5e-20 Score=145.04 Aligned_cols=184 Identities=19% Similarity=0.150 Sum_probs=136.4
Q ss_pred CCCCccCceecCccc-cCCCCCcEEecCCCcccCCCcch----hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCcc
Q 038163 1 MSFNEINNLVVPQGY-NGLRKLKSLDLSGVGVRDGSKLL----QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNME 75 (207)
Q Consensus 1 l~~n~~~~~~p~~~~-~~l~~L~~L~ls~n~i~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~ 75 (207)
|++|.+.+.+|...+ ..+++|++|++++|.+ ....+ ..+..+++|++|++++|.++...+ ..+..+++|+
T Consensus 98 l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i--~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~ 172 (310)
T 4glp_A 98 LEDLKITGTMPPLPLEATGLALSSLRLRNVSW--ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC---EQVRAFPALT 172 (310)
T ss_dssp EESCCCBSCCCCCSSSCCCBCCSSCEEESCCC--SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT---TSCCCCTTCC
T ss_pred eeCCEeccchhhhhhhccCCCCCEEEeecccc--cchhhhhHHHHhhhccCCCEEEeeCCCcchhhH---HHhccCCCCC
Confidence 367888888876644 8899999999999999 34322 345679999999999999998877 7888999999
Q ss_pred EEEcCCCCCChH--HH-----Hhhcccccc--cCCcccce--eccccccccCCCCCCCccceecccccccccCchhHHHH
Q 038163 76 YLKLDDSPLHIS--LL-----QSIASIFPL--LKNLSMIG--CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQII 144 (207)
Q Consensus 76 ~L~l~~~~~~~~--~~-----~~l~~l~~L--~~n~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l 144 (207)
+|++++|.+.+. .+ ..+..++.| ++|.++.. .+.. .+..+++|++|+++ +|.+++..|..+
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~------l~~~l~~L~~L~Ls--~N~l~~~~p~~~ 244 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA------LAAAGVQPHSLDLS--HNSLRATVNPSA 244 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH------HHHHTCCCSSEECT--TSCCCCCCCSCC
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH------HHhcCCCCCEEECC--CCCCCccchhhH
Confidence 999999997653 21 122334444 77777531 1110 13567889999999 999987656555
Q ss_pred HhcC---CCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 145 SESM---SSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 145 ~~~~---~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
. .+ ++|++|++++|.++ .+ |. .+. ++|+.|++++|++.+. |. +..+++|+.|+
T Consensus 245 ~-~~~~~~~L~~L~Ls~N~l~---~l-p~-~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 245 P-RCMWSSALNSLNLSFAGLE---QV-PK-GLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLT 300 (310)
T ss_dssp S-SCCCCTTCCCEECCSSCCC---SC-CS-CCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEE
T ss_pred H-hccCcCcCCEEECCCCCCC---ch-hh-hhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEE
Confidence 5 55 68999999999998 77 76 453 7999999999999863 33 56677777653
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=9e-19 Score=139.46 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=107.7
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +++..|..+++|++|++++|.+ ..+|..+. ++|++|++++|.++...+ ..+..+++|++|+++
T Consensus 83 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l---~~l~~~~~--~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 83 LINNKISK-ISPGAFAPLVKLERLYLSKNQL---KELPEKMP--KTLQELRVHENEITKVRK---SVFNGLNQMIVVELG 153 (330)
T ss_dssp CCSSCCCC-BCTTTTTTCTTCCEEECCSSCC---SBCCSSCC--TTCCEEECCSSCCCBBCH---HHHTTCTTCCEEECC
T ss_pred CCCCcCCe-eCHHHhcCCCCCCEEECCCCcC---CccChhhc--ccccEEECCCCcccccCH---hHhcCCccccEEECC
Confidence 56788885 4446689999999999999998 45555443 678888888887776655 556777777777777
Q ss_pred CCCCCh--HHHHhhcccccc-----cCCccc---------------------ceeccccccccCCCCCCCccceeccccc
Q 038163 81 DSPLHI--SLLQSIASIFPL-----LKNLSM---------------------IGCEVNGVIRGQDFPHSKSLEHLDMEFM 132 (207)
Q Consensus 81 ~~~~~~--~~~~~l~~l~~L-----~~n~~~---------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 132 (207)
+|.+.. ..+..+..+++| .+|.+. +..+. .+..+++|+.|+++
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~Ls-- 224 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA-------SLKGLNNLAKLGLS-- 224 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG-------GGTTCTTCCEEECC--
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH-------HhcCCCCCCEEECC--
Confidence 777653 222333333333 334333 32222 45556666666666
Q ss_pred ccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163 133 RIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197 (207)
Q Consensus 133 ~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 197 (207)
+|.+++..+..+. .+++|+.|++++|.++ .+ |. .+..+++|+.|++++|++.+..+..|
T Consensus 225 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~---~l-p~-~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 225 FNSISAVDNGSLA-NTPHLRELHLNNNKLV---KV-PG-GLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp SSCCCEECTTTGG-GSTTCCEEECCSSCCS---SC-CT-TTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CCcCceeChhhcc-CCCCCCEEECCCCcCc---cC-Ch-hhccCCCcCEEECCCCcCCccChhhc
Confidence 6666654444555 5666666666666665 55 55 56666666666666666664433333
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=6e-19 Score=146.28 Aligned_cols=186 Identities=13% Similarity=0.099 Sum_probs=128.9
Q ss_pred CccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCC
Q 038163 4 NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSP 83 (207)
Q Consensus 4 n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 83 (207)
+.+. .+|... -+++++|++++|.+ ....+..|..+++|++|++++|.++...+ ..+..+++|++|++++|.
T Consensus 64 ~~l~-~iP~~~---~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 64 RGLS-EVPQGI---PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEV---GAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCCS-SCCSCC---CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSC
T ss_pred CCcC-ccCCCC---CCCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcCh---hhccCcccCCEEECCCCc
Confidence 3444 467543 36899999999999 56667889999999999999999998887 788999999999999999
Q ss_pred CChHHHHhhcccccc-----cCCcccceecc-------ccccc-----------cCCCCCCCccceecccccccccCchh
Q 038163 84 LHISLLQSIASIFPL-----LKNLSMIGCEV-------NGVIR-----------GQDFPHSKSLEHLDMEFMRIALNTSF 140 (207)
Q Consensus 84 ~~~~~~~~l~~l~~L-----~~n~~~~~~~~-------~~~~~-----------~~~~~~~~~L~~L~l~~~~n~~~~~~ 140 (207)
+....+..+..+++| ++|.+....+. ...++ .+.+..+++|++|+++ +|.+++ +
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~--~n~l~~-~ 211 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG--MCNIKD-M 211 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT--TSCCSS-C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC--CCcccc-c
Confidence 885444445555555 77777653332 00001 1134455666666666 666653 2
Q ss_pred HHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 141 LQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 141 ~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
+ .+. .+++|+.|++++|.+. +.. +. .+..+++|+.|++++|++.+..+..|..+++|+.||
T Consensus 212 ~-~~~-~l~~L~~L~Ls~N~l~--~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 212 P-NLT-PLVGLEELEMSGNHFP--EIR-PG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp C-CCT-TCTTCCEEECTTSCCS--EEC-GG-GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred c-ccc-ccccccEEECcCCcCc--ccC-cc-cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 2 234 5667777777777776 333 44 677777788888888877766667777777777653
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=1e-19 Score=144.35 Aligned_cols=184 Identities=18% Similarity=0.106 Sum_probs=110.5
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc-h------------hc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT-T------------QE 67 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~------------~~ 67 (207)
|++|.+.+ +++..|..+++|++|++++|.+ ... +. +..+++|++|++++|.+++..+.. . ..
T Consensus 41 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l--~~~-~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~ 115 (317)
T 3o53_A 41 LSGNPLSQ-ISAADLAPFTKLELLNLSSNVL--YET-LD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS 115 (317)
T ss_dssp CTTSCCCC-CCHHHHTTCTTCCEEECTTSCC--EEE-EE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEE
T ss_pred CcCCccCc-CCHHHhhCCCcCCEEECCCCcC--Ccc-hh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcC
Confidence 45677775 4445567777788888887777 222 22 667777777777777665432200 0 00
Q ss_pred ccCCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCC-CCCCccceecccccccccCchhH
Q 038163 68 LHNFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDF-PHSKSLEHLDMEFMRIALNTSFL 141 (207)
Q Consensus 68 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~n~~~~~~~ 141 (207)
...+++|++|++++|.+....+..+..+++| ++|.+.+..+. .+ ..+++|++|+++ +|.++.. +
T Consensus 116 ~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~~l~~L~~L~L~--~N~l~~~-~ 185 (317)
T 3o53_A 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-------ELAASSDTLEHLNLQ--YNFIYDV-K 185 (317)
T ss_dssp ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG-------GGGGGTTTCCEEECT--TSCCCEE-E
T ss_pred ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH-------HHhhccCcCCEEECC--CCcCccc-c
Confidence 1123455556666665554333333333333 55555554443 33 345677777777 7766533 2
Q ss_pred HHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 142 QIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 142 ~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
... .+++|+.|++++|.++ .+ +. .+..+++|+.|++++|++. .+|..+..+++|+.|+
T Consensus 186 -~~~-~l~~L~~L~Ls~N~l~---~l-~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 186 -GQV-VFAKLKTLDLSSNKLA---FM-GP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243 (317)
T ss_dssp -CCC-CCTTCCEEECCSSCCC---EE-CG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred -ccc-ccccCCEEECCCCcCC---cc-hh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE
Confidence 112 3667777777777777 56 55 5777888888888888887 4677777777777653
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=151.25 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=41.7
Q ss_pred CCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCccc--ccchhhhhcCCCCCceEEecCCcCCCCccc-c
Q 038163 120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINS--SETLNQGLCSLVHLQELYIASNDLRGSLPW-C 196 (207)
Q Consensus 120 ~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~--~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~ 196 (207)
.+++|++|+++ +|.+++..+..+. .+++|+.|++++|.++ + .+ |. .+..+++|+.|++++|.+.+.+|. .
T Consensus 322 ~l~~L~~L~Ls--~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~--~l~~~-~~-~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 322 KISPFLHLDFS--NNLLTDTVFENCG-HLTELETLILQMNQLK--ELSKI-AE-MTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp SCCCCCEEECC--SSCCCTTTTTTCC-CCSSCCEEECCSSCCC--BHHHH-HH-HHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred hCCcccEEEeE--CCccChhhhhhhc-cCCCCCEEEccCCccC--ccccc-hH-HHhhCCCCCEEECCCCcCCcccccch
Confidence 34455555555 5555544444444 5555555555555555 2 22 23 455566666666666666553443 2
Q ss_pred ccCCCCCccC
Q 038163 197 MANMTSLRIL 206 (207)
Q Consensus 197 ~~~l~~L~~l 206 (207)
+..+++|+.|
T Consensus 395 ~~~l~~L~~L 404 (520)
T 2z7x_B 395 CSWTKSLLSL 404 (520)
T ss_dssp CCCCTTCCEE
T ss_pred hccCccCCEE
Confidence 4555555544
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=6.3e-20 Score=145.26 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=128.0
Q ss_pred CCCCCcEEecCCCcccCCCcchhhh--cCCCCCCEEEcCCCcCCcccccchhcccCC-----CCccEEEcCCCCCChHHH
Q 038163 17 GLRKLKSLDLSGVGVRDGSKLLQSI--GSFSSLNSLYLSSNNFTETVTITTQELHNF-----TNMEYLKLDDSPLHISLL 89 (207)
Q Consensus 17 ~l~~L~~L~ls~n~i~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~ 89 (207)
.+++|++|++++|.+ .+.+|..+ ..+++|++|++++|.+++. | ..+..+ ++|++|++++|.+.+..+
T Consensus 93 ~l~~L~~L~L~~n~l--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~---~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEV--TGTAPPPLLEATGPDLNILNLRNVSWATR-D---AWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEBC--BSCCCCCSSSCCSCCCSEEEEESCBCSSS-S---SHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred CcCCccEEEccCCcc--cchhHHHHHHhcCCCccEEEccCCCCcch-h---HHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 689999999999999 56777765 8899999999999999987 6 444444 889999999999886665
Q ss_pred Hhhcccccc-----cCCcccce--eccccccccCCCCCCCccceecccccccccCc--hhHH-HHHhcCCCccEEEccCC
Q 038163 90 QSIASIFPL-----LKNLSMIG--CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNT--SFLQ-IISESMSSLKYLSLSYY 159 (207)
Q Consensus 90 ~~l~~l~~L-----~~n~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~--~~~~-~l~~~~~~L~~L~l~~n 159 (207)
..+..+++| ++|.+.+. .+.. ..+..+++|++|+++ +|.++. ..+. .+. .+++|+.|++++|
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~~~~~l~~L~~L~L~--~N~l~~~~~~~~~~~~-~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISA-----LCPLKFPTLQVLALR--NAGMETPSGVCSALAA-ARVQLQGLDLSHN 238 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHH-----SCTTSCTTCCEEECT--TSCCCCHHHHHHHHHH-TTCCCSEEECTTS
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHH-----HHhccCCCCCEEECC--CCcCcchHHHHHHHHh-cCCCCCEEECCCC
Confidence 677666666 77776653 2220 023788999999999 999873 2333 334 7789999999999
Q ss_pred ccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 160 TLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 160 ~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
.++ +.+ +...+..+++|+.|++++|.+. .+|..+. ++|+.|
T Consensus 239 ~l~--~~~-~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L 279 (312)
T 1wwl_A 239 SLR--DAA-GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVL 279 (312)
T ss_dssp CCC--SSC-CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEE
T ss_pred cCC--ccc-chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEE
Confidence 998 444 3325666889999999999998 6676665 666654
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=7.4e-19 Score=136.60 Aligned_cols=173 Identities=21% Similarity=0.201 Sum_probs=138.8
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+. .+++..|..+++|++|++++|.+ ....+..+..+++|++|++++|.+....+ ..+..+++|++|+++
T Consensus 59 l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 59 LSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVA 132 (276)
T ss_dssp CTTCCCC-EECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTSCCCCSTT---CCCTTCTTCCEEECC
T ss_pred CCCCcCC-ccCHHHccCCcCCCEEECCCCcc--CccChhhhcCCccccEEECCCCCccccCc---hhcccCCCCCEEECc
Confidence 5678888 46767789999999999999999 55566789999999999999999998766 578899999999999
Q ss_pred CCCCChH-HHHhhcccccc-----cCCcccceeccccccccCCCCCCCccc----eecccccccccCchhHHHHHhcCCC
Q 038163 81 DSPLHIS-LLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLE----HLDMEFMRIALNTSFLQIISESMSS 150 (207)
Q Consensus 81 ~~~~~~~-~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~n~~~~~~~~~l~~~~~~ 150 (207)
+|.+... .+..+..+++| ++|.+++..+. .+..+..|+ .++++ +|.+++..+..+ ...+
T Consensus 133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~l~l~L~ls--~n~l~~~~~~~~--~~~~ 201 (276)
T 2z62_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-------DLRVLHQMPLLNLSLDLS--LNPMNFIQPGAF--KEIR 201 (276)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-------GGHHHHTCTTCCEEEECC--SSCCCEECTTSS--CSCC
T ss_pred CCccceecCchhhccCCCCCEEECCCCCCCcCCHH-------HhhhhhhccccceeeecC--CCcccccCcccc--CCCc
Confidence 9998752 45666665555 88888775554 566566666 89999 999985444333 4568
Q ss_pred ccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc
Q 038163 151 LKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP 194 (207)
Q Consensus 151 L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p 194 (207)
|+.|++++|.++ .+ +...+..+++|+.|++++|++....+
T Consensus 202 L~~L~L~~n~l~---~~-~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 202 LKELALDTNQLK---SV-PDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEEEECCSSCCS---CC-CTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccEEECCCCcee---ec-CHhHhcccccccEEEccCCcccccCC
Confidence 999999999998 66 55367889999999999999986544
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=1.6e-18 Score=135.89 Aligned_cols=167 Identities=17% Similarity=0.131 Sum_probs=137.0
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +++..|..+++|++|++++|.+ ..++.. ..+++|++|++++|.++. +| ..+..+++|++|+++
T Consensus 38 L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l---~~~~~~-~~l~~L~~L~Ls~N~l~~-l~---~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 38 LSENLLYT-FSLATLMPYTRLTQLNLDRAEL---TKLQVD-GTLPVLGTLDLSHNQLQS-LP---LLGQTLPALTVLDVS 108 (290)
T ss_dssp CTTSCCSE-EEGGGGTTCTTCCEEECTTSCC---CEEECC-SCCTTCCEEECCSSCCSS-CC---CCTTTCTTCCEEECC
T ss_pred cCCCcCCc-cCHHHhhcCCCCCEEECCCCcc---CcccCC-CCCCcCCEEECCCCcCCc-Cc---hhhccCCCCCEEECC
Confidence 57888885 4556789999999999999999 344443 789999999999999985 56 577889999999999
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.++...+..+..+++| ++|.+.+..+. .+..+++|+.|+++ +|.++...+..+. .+++|+.|+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~--~N~l~~l~~~~~~-~l~~L~~L~ 178 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-------LLTPTPKLEKLSLA--NNNLTELPAGLLN-GLENLDTLL 178 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT-------TTTTCTTCCEEECT--TSCCSCCCTTTTT-TCTTCCEEE
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChh-------hcccccCCCEEECC--CCcCCccCHHHhc-CcCCCCEEE
Confidence 999985444455555554 88888875554 67899999999999 9999854445556 789999999
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~ 191 (207)
+++|.++ .+ |. .+....+|+.+++++|++..
T Consensus 179 L~~N~l~---~i-p~-~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 179 LQENSLY---TI-PK-GFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSSCCC---CC-CT-TTTTTCCCSEEECCSCCBCC
T ss_pred CCCCcCC---cc-Ch-hhcccccCCeEEeCCCCccC
Confidence 9999998 88 87 77788899999999998864
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=152.45 Aligned_cols=173 Identities=26% Similarity=0.224 Sum_probs=97.8
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHH-Hhhcc
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLL-QSIAS 94 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~ 94 (207)
..+++|++|++++|.++.....+..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+....+ ..+..
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS----NFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE----EEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc----cccccCCCCEEEccCCccccccchhhhhc
Confidence 45666667777777662111225566666677777777666665433 35566666666666665543222 12233
Q ss_pred cccc-----cCCcccceeccccccccCCCCCCCccceecccccccccC-chhHHHHHhcCCCccEEEccCCccCcccccc
Q 038163 95 IFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN-TSFLQIISESMSSLKYLSLSYYTLGINSSET 168 (207)
Q Consensus 95 l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~-~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~ 168 (207)
+++| ++|.+.+..+. .+..+++|+.|+++ +|.++ +..|..+. .+++|+.|++++|.++ +..
T Consensus 420 l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~p~~~~-~l~~L~~L~l~~n~l~--~~~- 486 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNG-------IFNGLSSLEVLKMA--GNSFQENFLPDIFT-ELRNLTFLDLSQCQLE--QLS- 486 (570)
T ss_dssp CTTCCEEECTTSCCEECCTT-------TTTTCTTCCEEECT--TCEEGGGEECSCCT-TCTTCCEEECTTSCCC--EEC-
T ss_pred CCCCCEEeCcCCcccccchh-------hhhcCCcCcEEECc--CCcCccccchhhhh-cccCCCEEECCCCccc--cCC-
Confidence 3332 55555554444 55566666666666 66654 23444455 5666666666666665 333
Q ss_pred hhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 169 LNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 169 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
|. .+..+++|+.|++++|++.+..|..+..+++|+.+
T Consensus 487 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 487 PT-AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp TT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred hh-hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 43 55666666666666666665555556666666554
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=158.27 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=38.1
Q ss_pred CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhc--ccCCCCccEEEcC
Q 038163 3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQE--LHNFTNMEYLKLD 80 (207)
Q Consensus 3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~l~~L~~L~l~ 80 (207)
+|.+.+.+++..|.++++|++|++++|.+ ....|..|..+++|++|++++|.+++..| .. +.++++|++|+++
T Consensus 57 ~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~~L~~L~~L~Ls 131 (844)
T 3j0a_A 57 SQYTPLTIDKEAFRNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGLSDAVL---KDGYFRNLKALTRLDLS 131 (844)
T ss_dssp TTCCCCEECTTTTSSCTTCCEEECTTCCC--CEECTTSSCSCSSCCCEECTTCCCSSCCS---TTCCCSSCSSCCEEEEE
T ss_pred CCCCccccCHHHhcCCCCCCEEECCCCcC--cccCHhHccCCcccCEeeCcCCCCCcccc---cCccccccCCCCEEECC
Confidence 34344445445555555555555555555 33345555555555555555555544333 11 4444444444444
Q ss_pred CCCCC
Q 038163 81 DSPLH 85 (207)
Q Consensus 81 ~~~~~ 85 (207)
+|.+.
T Consensus 132 ~N~l~ 136 (844)
T 3j0a_A 132 KNQIR 136 (844)
T ss_dssp SCCCC
T ss_pred CCccc
Confidence 44443
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=5.5e-19 Score=149.45 Aligned_cols=181 Identities=18% Similarity=0.146 Sum_probs=146.2
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.++ .+|+.+ .+++++|++++|.+ ....|..+..+++|++|++++|.+++..| ..+..+++|++|++++
T Consensus 13 ~~~~l~-~ip~~~---~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 13 RSRSFT-SIPSGL---TAAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEG---DAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TTSCCS-SCCSCC---CTTCCEEECCSSCC--CEECSSTTSSCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTT
T ss_pred CCCccc-cccccC---CCCccEEECcCCcc--CccChhhhhcCCcccEEECCCCCcCccCh---hhccccccCCEEECCC
Confidence 456676 688654 27899999999999 55567789999999999999999998887 7889999999999999
Q ss_pred CCCChHHHHhhcccccc-----cCCcccce-eccccccccCCCCCCCccceecccccccccCchhH-HHHHhcCCCccEE
Q 038163 82 SPLHISLLQSIASIFPL-----LKNLSMIG-CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL-QIISESMSSLKYL 154 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~-~~l~~~~~~L~~L 154 (207)
|.+.+..+..++.+++| ++|.+.+. .+. .+..+++|++|+++ +|.+.+.++ ..+. .+++|++|
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~~l~~L~~L~L~--~n~~~~~~~~~~~~-~l~~L~~L 153 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-------LFPNLTNLQTLRIG--NVETFSEIRRIDFA-GLTSLNEL 153 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-------SCTTCTTCCEEEEE--ESSSCCEECTTTTT-TCCEEEEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhh-------hhhccCCccEEECC--CCccccccCHhhhh-cccccCee
Confidence 99986666656666665 77887752 455 78899999999999 998433444 5677 89999999
Q ss_pred EccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc-ccCCCCCccC
Q 038163 155 SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC-MANMTSLRIL 206 (207)
Q Consensus 155 ~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~l 206 (207)
++++|.+. +.+ |. .+..+++|+.|+++.|.+.. +|.. +..+++|+.|
T Consensus 154 ~L~~n~l~--~~~-~~-~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 154 EIKALSLR--NYQ-SQ-SLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYL 201 (549)
T ss_dssp EEEETTCC--EEC-TT-TTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEE
T ss_pred eccCCccc--ccC-hh-hhhccccCceEecccCcccc-cchhhHhhcccccEE
Confidence 99999998 556 76 89999999999999999864 4433 3567777765
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=145.03 Aligned_cols=146 Identities=26% Similarity=0.284 Sum_probs=106.9
Q ss_pred cCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCCh--HHHHhhcccccc-----cCCcccceeccccccc
Q 038163 42 GSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHI--SLLQSIASIFPL-----LKNLSMIGCEVNGVIR 114 (207)
Q Consensus 42 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~ 114 (207)
..+++|++|++++|.+++..| ..+..+++|++|++++|.+.+ ..+..+..+++| ++|.+.+.+|..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---- 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVF---ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---- 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTT---TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC----
T ss_pred hhCCcccEEEeECCccChhhh---hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc----
Confidence 567888888888888888777 677888888888888888875 445556555555 777777655541
Q ss_pred cCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc
Q 038163 115 GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP 194 (207)
Q Consensus 115 ~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p 194 (207)
.+..+++|+.|+++ +|.+++..+..+ .++|+.|++++|.++ .+ |. .+..+++|+.|++++|++.+ +|
T Consensus 394 --~~~~l~~L~~L~Ls--~N~l~~~~~~~l---~~~L~~L~Ls~N~l~---~i-p~-~~~~l~~L~~L~L~~N~l~~-l~ 460 (520)
T 2z7x_B 394 --DCSWTKSLLSLNMS--SNILTDTIFRCL---PPRIKVLDLHSNKIK---SI-PK-QVVKLEALQELNVASNQLKS-VP 460 (520)
T ss_dssp --SCCCCTTCCEEECC--SSCCCGGGGGSC---CTTCCEEECCSSCCC---CC-CG-GGGGCTTCCEEECCSSCCCC-CC
T ss_pred --hhccCccCCEEECc--CCCCCcchhhhh---cccCCEEECCCCccc---cc-ch-hhhcCCCCCEEECCCCcCCc-cC
Confidence 46677888888888 888876555332 157888888888887 77 76 66678888888888888874 55
Q ss_pred cc-ccCCCCCccCC
Q 038163 195 WC-MANMTSLRILD 207 (207)
Q Consensus 195 ~~-~~~l~~L~~l~ 207 (207)
.. +..+++|+.+|
T Consensus 461 ~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 461 DGIFDRLTSLQKIW 474 (520)
T ss_dssp TTTTTTCTTCCEEE
T ss_pred HHHhccCCcccEEE
Confidence 43 77777777653
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=9.9e-18 Score=132.48 Aligned_cols=170 Identities=17% Similarity=0.197 Sum_probs=119.2
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
+++|.+.. +| . +..+++|++|++++|.+ ..++. +..+++|++|++++|.+++. + .+..+++|++|+++
T Consensus 48 l~~~~i~~-l~-~-~~~l~~L~~L~L~~n~i---~~~~~-~~~l~~L~~L~L~~n~l~~~-~----~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 48 AFGTGVTT-IE-G-VQYLNNLIGLELKDNQI---TDLAP-LKNLTKITELELSGNPLKNV-S----AIAGLQSIKTLDLT 115 (308)
T ss_dssp CTTSCCCC-CT-T-GGGCTTCCEEECCSSCC---CCCGG-GTTCCSCCEEECCSCCCSCC-G----GGTTCTTCCEEECT
T ss_pred eeCCCccC-ch-h-hhccCCCCEEEccCCcC---CCChh-HccCCCCCEEEccCCcCCCc-h----hhcCCCCCCEEECC
Confidence 35566663 54 3 67888888888888888 33444 78888888888888888763 3 57788888888888
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.+... ..+..+++| ++|.+++. + .+..+++|++|+++ +|.+++..+ +. .+++|+.|+
T Consensus 116 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-~--------~l~~l~~L~~L~l~--~n~l~~~~~--l~-~l~~L~~L~ 179 (308)
T 1h6u_A 116 STQITDV--TPLAGLSNLQVLYLDLNQITNI-S--------PLAGLTNLQYLSIG--NAQVSDLTP--LA-NLSKLTTLK 179 (308)
T ss_dssp TSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G--------GGGGCTTCCEEECC--SSCCCCCGG--GT-TCTTCCEEE
T ss_pred CCCCCCc--hhhcCCCCCCEEECCCCccCcC-c--------cccCCCCccEEEcc--CCcCCCChh--hc-CCCCCCEEE
Confidence 8887642 224444444 66666542 2 35567788888888 887775333 55 778888888
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
+++|.++ .+ + .+..+++|+.|++++|++.+.. .+..+++|+.|
T Consensus 180 l~~n~l~---~~-~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L 222 (308)
T 1h6u_A 180 ADDNKIS---DI-S--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIV 222 (308)
T ss_dssp CCSSCCC---CC-G--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEE
T ss_pred CCCCccC---cC-h--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEE
Confidence 8888887 55 4 3677788888888888887543 26777777765
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.1e-18 Score=146.12 Aligned_cols=179 Identities=19% Similarity=0.166 Sum_probs=139.6
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhh-----------------hcCCCCCCEEEcCCCcCCccccc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQS-----------------IGSFSSLNSLYLSSNNFTETVTI 63 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-----------------~~~l~~L~~L~l~~n~~~~~~~~ 63 (207)
|++|.+.+..| +..+++|++|++++|.+. .++.. ...+++|+.|++++|.+++..|
T Consensus 65 Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~---~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~- 137 (487)
T 3oja_A 65 LSSNVLYETLD---LESLSTLRTLDLNNNYVQ---ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD- 137 (487)
T ss_dssp CTTSCCEEEEE---CTTCTTCCEEECCSSEEE---EEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGG-
T ss_pred eeCCCCCCCcc---cccCCCCCEEEecCCcCC---CCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCc-
Confidence 57788886554 688888888888888872 22211 1235778888888888888777
Q ss_pred chhcccCCCCccEEEcCCCCCChHHHHhhc-ccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccC
Q 038163 64 TTQELHNFTNMEYLKLDDSPLHISLLQSIA-SIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN 137 (207)
Q Consensus 64 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~ 137 (207)
..+..+++|++|++++|.+.+..+..+. .+++| ++|.+++. + ....+++|+.|+++ +|.++
T Consensus 138 --~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~--------~~~~l~~L~~L~Ls--~N~l~ 204 (487)
T 3oja_A 138 --LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--------GQVVFAKLKTLDLS--SNKLA 204 (487)
T ss_dssp --BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--------CCCCCTTCCEEECC--SSCCC
T ss_pred --hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c--------ccccCCCCCEEECC--CCCCC
Confidence 6778899999999999999876665553 44444 88888775 3 34468999999999 99998
Q ss_pred chhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCC-CCccccccCCCCCccC
Q 038163 138 TSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLR-GSLPWCMANMTSLRIL 206 (207)
Q Consensus 138 ~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~l 206 (207)
+..+ .+. .+++|+.|++++|.++ .+ |. .+..+++|+.|++++|.+. +.+|..+..++.++.+
T Consensus 205 ~~~~-~~~-~l~~L~~L~Ls~N~l~---~l-p~-~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 205 FMGP-EFQ-SAAGVTWISLRNNKLV---LI-EK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp EECG-GGG-GGTTCSEEECTTSCCC---EE-CT-TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred CCCH-hHc-CCCCccEEEecCCcCc---cc-ch-hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 6444 477 8999999999999998 78 87 7889999999999999998 5677777777766543
No 64
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=6.3e-19 Score=149.81 Aligned_cols=83 Identities=20% Similarity=0.146 Sum_probs=46.7
Q ss_pred CCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc-ccc
Q 038163 119 PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP-WCM 197 (207)
Q Consensus 119 ~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~ 197 (207)
..+++|++|+++ +|.+++..+..+. .+++|+.|++++|.++.-..+ |. .+..+++|+.|++++|++.+.+| ..+
T Consensus 350 ~~l~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFT--QNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKV-AL-MTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SSCCCCCEEECC--SSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHH-HH-TTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred cCCCCceEEECC--CCccccchhhhhc-ccCCCCEEECCCCCcCCcccc-hh-hhcCCCCCCEEECCCCcCCCccChhhh
Confidence 344556666666 6666554555555 566666666666666500022 22 45666666666666666665344 335
Q ss_pred cCCCCCccC
Q 038163 198 ANMTSLRIL 206 (207)
Q Consensus 198 ~~l~~L~~l 206 (207)
..+++|+.|
T Consensus 425 ~~l~~L~~L 433 (562)
T 3a79_B 425 AWAESILVL 433 (562)
T ss_dssp CCCTTCCEE
T ss_pred cCcccCCEE
Confidence 556666554
No 65
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.6e-18 Score=128.23 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=103.8
Q ss_pred CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163 3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS 82 (207)
Q Consensus 3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~ 82 (207)
++.+. .+|... .+++++|++++|.+ ....+..+..+++|++|++++|.++...+ ..+..+++|++|++++|
T Consensus 16 ~~~l~-~~p~~~---~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 16 SQGRT-SVPTGI---PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPN---GVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp SSCCS-SCCSCC---CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSS
T ss_pred CCCcc-CCCCCC---CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccCh---hhcCCCCCcCEEECCCC
Confidence 44555 466443 46889999999999 44445567889999999999999987655 56778899999999999
Q ss_pred CCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163 83 PLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS 157 (207)
Q Consensus 83 ~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~ 157 (207)
.+....+..+..+++| ++|.+++..+. .+..+++|++|+++ +|.+++..+..+. .+++|+.|+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~l~--~N~l~~~~~~~~~-~l~~L~~L~l~ 156 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDG-------VFDKLTQLKDLRLY--QNQLKSVPDGVFD-RLTSLQYIWLH 156 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCSCCCTTTTT-TCTTCCEEECC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHh-------HhccCCcCCEEECC--CCccceeCHHHhc-cCCCccEEEec
Confidence 8873322222333322 44555443332 35555666666666 6655543333344 55566666665
Q ss_pred CCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCC
Q 038163 158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMT 201 (207)
Q Consensus 158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~ 201 (207)
+|.+. +. +++|+.|+++.|.+.+.+|..++.++
T Consensus 157 ~N~~~--~~---------~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 157 DNPWD--CT---------CPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp SCCBC--CC---------TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCCee--cC---------CCCHHHHHHHHHhCCceeeccCcccc
Confidence 55544 11 23455555666666666666555543
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=146.27 Aligned_cols=166 Identities=19% Similarity=0.237 Sum_probs=98.9
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +++..|.++++|++|++++|.+ ....+..|..+++|++|++++|.++...| ..+..+++|++|+++
T Consensus 35 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 35 LSFNPLRH-LGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLVAV 108 (570)
T ss_dssp CCSCCCCE-ECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECT
T ss_pred ccCCccCc-cChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCccCH---hhhcCcccccccccc
Confidence 45666663 4445567777777777777777 34444566777777777777777776655 566677777777777
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccc-eeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCc---
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMI-GCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSL--- 151 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L--- 151 (207)
+|.+.......++.+++| ++|.+.+ .+|. .+.++++|++|+++ +|.+++..+..+. .+++|
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~~ 178 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-------YFSNLTNLEHLDLS--SNKIQSIYCTDLR-VLHQMPLL 178 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-------GGGGCTTCCEEECT--TSCCCEECGGGGH-HHHTCTTC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChh-------hhcccCCCCEEeCc--CCccceecHHHcc-chhccchh
Confidence 776653222223344333 5555554 2455 66667777777777 7766654444444 44444
Q ss_pred -cEEEccCCccCcccccchhhhhcCCCCCceEEecCC
Q 038163 152 -KYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASN 187 (207)
Q Consensus 152 -~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n 187 (207)
+.+++++|.+. .+ +...+... +|+.|++++|
T Consensus 179 ~~~L~l~~n~l~---~~-~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 179 NLSLDLSLNPMN---FI-QPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp CCEEECTTCCCC---EE-CTTTTTTC-EEEEEEEESC
T ss_pred hhhcccCCCCce---ec-CHHHhccC-cceeEecccc
Confidence 66777777666 33 22133333 5666666655
No 67
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1e-17 Score=126.34 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=116.7
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
+++.+. .+|... .+++++|++++|.+ ....+..|..+++|++|++++|.++...| ..+..+++|++|++++
T Consensus 19 ~~~~l~-~iP~~l---~~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~---~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 19 RGKGLT-EIPTNL---PETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAP---DAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTSCCS-SCCSSC---CTTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECT---TTTTTCSSCCEEECCS
T ss_pred CCCCcC-cCCCcc---CcCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCH---HHhhCCcCCCEEECCC
Confidence 456666 577543 26788999999999 44444578889999999999999988777 7888889999999999
Q ss_pred CCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCcc
Q 038163 82 SPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL 161 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~ 161 (207)
|.+. .++.. .+..+++|+.|+++ +|.+++..+..+. .+++|+.|++++|.+
T Consensus 90 N~l~--------------------~l~~~------~f~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 90 NKIT--------------------ELPKS------LFEGLFSLQLLLLN--ANKINCLRVDAFQ-DLHNLNLLSLYDNKL 140 (220)
T ss_dssp SCCC--------------------CCCTT------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCC
T ss_pred CcCC--------------------ccCHh------HccCCCCCCEEECC--CCCCCEeCHHHcC-CCCCCCEEECCCCcC
Confidence 9886 23331 56778899999999 9998876677777 888999999999999
Q ss_pred CcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163 162 GINSSETLNQGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 162 ~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~ 191 (207)
+ .+ +...+..+++|+.|++++|++..
T Consensus 141 ~---~~-~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 141 Q---TI-AKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp S---CC-CTTTTTTCTTCCEEECCSSCEEC
T ss_pred C---EE-CHHHHhCCCCCCEEEeCCCCcCC
Confidence 8 55 44368888999999999998753
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=1.7e-18 Score=147.13 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +|+..|.++++|++|++++|.+ ....|..|..+++|++|++++|.++. +| .. .+++|++|+++
T Consensus 59 Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp---~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 59 LSQNSISE-LRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQN-IS---CC--PMASLRHLDLS 129 (562)
T ss_dssp CCSSCCCC-CCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCE-EC---SC--CCTTCSEEECC
T ss_pred CCCCCccc-cChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCc-cC---cc--ccccCCEEECC
Confidence 46677764 4555677788888888888877 44456677777778888887777774 44 23 67777777777
Q ss_pred CCCCCh-HHHHhhcccccc
Q 038163 81 DSPLHI-SLLQSIASIFPL 98 (207)
Q Consensus 81 ~~~~~~-~~~~~l~~l~~L 98 (207)
+|.+.. ..+..++.+++|
T Consensus 130 ~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTC
T ss_pred CCCccccCchHhhcccCcc
Confidence 777664 223444444444
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=2.7e-18 Score=136.12 Aligned_cols=179 Identities=18% Similarity=0.176 Sum_probs=137.9
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchh-----------------hhcCCCCCCEEEcCCCcCCccccc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-----------------SIGSFSSLNSLYLSSNNFTETVTI 63 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~-----------------~~~~l~~L~~L~l~~n~~~~~~~~ 63 (207)
|++|.+.+..| +..+++|++|++++|.++ .++. ....+++|++|++++|.+++..+
T Consensus 65 Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~- 137 (317)
T 3o53_A 65 LSSNVLYETLD---LESLSTLRTLDLNNNYVQ---ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD- 137 (317)
T ss_dssp CTTSCCEEEEE---ETTCTTCCEEECCSSEEE---EEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG-
T ss_pred CCCCcCCcchh---hhhcCCCCEEECcCCccc---cccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccc-
Confidence 56788876543 688888888888888872 2211 01235678888888888887766
Q ss_pred chhcccCCCCccEEEcCCCCCChHHHHhh----cccccc--cCCcccceeccccccccCCCCCCCccceecccccccccC
Q 038163 64 TTQELHNFTNMEYLKLDDSPLHISLLQSI----ASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN 137 (207)
Q Consensus 64 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~ 137 (207)
..+..+++|++|++++|.+....+..+ ..++.| ++|.+++. + ....+++|+.|+++ +|.++
T Consensus 138 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--------~~~~l~~L~~L~Ls--~N~l~ 204 (317)
T 3o53_A 138 --LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--------GQVVFAKLKTLDLS--SNKLA 204 (317)
T ss_dssp --BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--------CCCCCTTCCEEECC--SSCCC
T ss_pred --hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c--------cccccccCCEEECC--CCcCC
Confidence 577788999999999999986544443 344444 88888764 3 34458999999999 99998
Q ss_pred chhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCC-CCccccccCCCCCccC
Q 038163 138 TSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLR-GSLPWCMANMTSLRIL 206 (207)
Q Consensus 138 ~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~l 206 (207)
+. +..+. .+++|+.|++++|.++ .+ |. .+..+++|+.|++++|++. +.+|..+..+++|+.+
T Consensus 205 ~l-~~~~~-~l~~L~~L~L~~N~l~---~l-~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 205 FM-GPEFQ-SAAGVTWISLRNNKLV---LI-EK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp EE-CGGGG-GGTTCSEEECTTSCCC---EE-CT-TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred cc-hhhhc-ccCcccEEECcCCccc---ch-hh-HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 54 44477 8999999999999998 78 87 7889999999999999998 6777888888877654
No 70
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.74 E-value=3.4e-17 Score=130.96 Aligned_cols=167 Identities=19% Similarity=0.286 Sum_probs=106.3
Q ss_pred ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc-----------------hhcccCCCCccEE
Q 038163 15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT-----------------TQELHNFTNMEYL 77 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----------------~~~l~~l~~L~~L 77 (207)
+..+++|++|++++|.+ ..++. +..+++|++|++++|.+.+..+.. ...+..+++|++|
T Consensus 151 ~~~l~~L~~L~l~~~~~---~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 226 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKV---KDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSL 226 (347)
T ss_dssp GTTCTTCCEEECCSSCC---CCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred hhhCCCCcEEEecCCCc---CCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEE
Confidence 45666666666666665 22222 555566666666666555431100 0114455566666
Q ss_pred EcCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCcc
Q 038163 78 KLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLK 152 (207)
Q Consensus 78 ~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~ 152 (207)
++++|.+....+ +..+++| ++|.+++. . .+..+++|++|+++ +|.+++. ..+. .+++|+
T Consensus 227 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~-------~~~~l~~L~~L~l~--~n~l~~~--~~~~-~l~~L~ 290 (347)
T 4fmz_A 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N-------AVKDLTKLKMLNVG--SNQISDI--SVLN-NLSQLN 290 (347)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G-------GGTTCTTCCEEECC--SSCCCCC--GGGG-GCTTCS
T ss_pred EccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h-------hHhcCCCcCEEEcc--CCccCCC--hhhc-CCCCCC
Confidence 666666553221 3333333 55555442 2 57778899999999 8888753 3456 788999
Q ss_pred EEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 153 YLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 153 ~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
.|++++|.+. +.. +. .+..+++|+.|++++|++.+..| +..+++|+.+|
T Consensus 291 ~L~L~~n~l~--~~~-~~-~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 291 SLFLNNNQLG--NED-ME-VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp EEECCSSCCC--GGG-HH-HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred EEECcCCcCC--CcC-hh-HhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence 9999999998 444 55 78889999999999999987655 77788888764
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=1.1e-18 Score=141.89 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=58.6
Q ss_pred CCCCCCccceecccccccccC----chhHHHHHhcCCCccEEEccCCccCcccc----cchhhhh--cCCCCCceEEecC
Q 038163 117 DFPHSKSLEHLDMEFMRIALN----TSFLQIISESMSSLKYLSLSYYTLGINSS----ETLNQGL--CSLVHLQELYIAS 186 (207)
Q Consensus 117 ~~~~~~~L~~L~l~~~~n~~~----~~~~~~l~~~~~~L~~L~l~~n~~~~~~~----i~~~~~~--~~~~~L~~L~l~~ 186 (207)
.+..+++|+.|+++ +|.++ ..++..+. .+++|+.|++++|.++ +. + +. .+ ..+++|+.|++++
T Consensus 211 ~l~~~~~L~~L~Ls--~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~--~~~~~~l-~~-~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 211 GLAYCQELKVLDLQ--DNTFTHLGSSALAIALK-SWPNLRELGLNDCLLS--ARGAAAV-VD-AFSKLENIGLQTLRLQY 283 (386)
T ss_dssp TGGGCTTCCEEECC--SSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCC--HHHHHHH-HH-HHHTCSSCCCCEEECCS
T ss_pred HhhcCCCccEEECc--CCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCc--hhhHHHH-HH-HHhhccCCCeEEEECcC
Confidence 55677788888888 88875 34566666 7788888888888877 33 3 33 44 3378888888888
Q ss_pred CcCCC----Cccccc-cCCCCCccCC
Q 038163 187 NDLRG----SLPWCM-ANMTSLRILD 207 (207)
Q Consensus 187 n~l~~----~~p~~~-~~l~~L~~l~ 207 (207)
|.+.+ .+|..+ .++++|+.|+
T Consensus 284 n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 284 NEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp SCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 88876 366655 5577777653
No 72
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=4.5e-17 Score=123.47 Aligned_cols=148 Identities=20% Similarity=0.131 Sum_probs=116.5
Q ss_pred CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163 3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS 82 (207)
Q Consensus 3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~ 82 (207)
++.+. .+|... .+++++|++++|.+ ....+..+..+++|++|++++|.++...+ ..+..+++|++|++++|
T Consensus 28 ~~~l~-~ip~~~---~~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~---~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 28 SKRHA-SVPAGI---PTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPV---GVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TSCCS-SCCSCC---CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSS
T ss_pred CCCcC-ccCCCC---CCCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcCh---hhcccCCCcCEEECCCC
Confidence 44454 577543 37788899999988 45567778888899999999998877655 55678888999999888
Q ss_pred CCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccC
Q 038163 83 PLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLG 162 (207)
Q Consensus 83 ~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~ 162 (207)
.++ .++.. .+..+++|+.|+++ +|.++ .+|..+. .+++|+.|++++|.++
T Consensus 99 ~l~--------------------~l~~~------~~~~l~~L~~L~Ls--~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 99 QLT--------------------VLPSA------VFDRLVHLKELFMC--CNKLT-ELPRGIE-RLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCC--------------------CCCTT------TTTTCTTCCEEECC--SSCCC-SCCTTGG-GCTTCSEEECCSSCCC
T ss_pred cCC--------------------ccChh------HhCcchhhCeEecc--CCccc-ccCcccc-cCCCCCEEECCCCcCC
Confidence 876 22221 56788999999999 99998 6677777 8999999999999998
Q ss_pred cccccchhhhhcCCCCCceEEecCCcCCCCc
Q 038163 163 INSSETLNQGLCSLVHLQELYIASNDLRGSL 193 (207)
Q Consensus 163 ~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~ 193 (207)
.+ +...+..+++|+.|++++|.+....
T Consensus 149 ---~~-~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 149 ---SI-PHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp ---CC-CTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ---cc-CHHHHhCCCCCCEEEeeCCCccCCc
Confidence 66 5437888999999999999987653
No 73
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=124.30 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=108.8
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcch-hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEc
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLL-QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKL 79 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l 79 (207)
+++|.+. .+|..+ ...+++|++++|.+ ....+ ..|..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 18 ~s~n~l~-~iP~~~---~~~~~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~---~~~~~l~~L~~L~L 88 (220)
T 2v70_A 18 CSNQKLN-KIPEHI---PQYTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEE---GAFEGASGVNEILL 88 (220)
T ss_dssp CCSSCCS-SCCSCC---CTTCSEEECCSSCC--CEECCCCCGGGCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEEC
T ss_pred eCCCCcc-cCccCC---CCCCCEEEcCCCcC--CccCchhhhccCCCCCEEECCCCcCCEECH---HHhCCCCCCCEEEC
Confidence 3566776 477543 34567888888888 33323 347788888888888888887766 67888888888888
Q ss_pred CCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCC
Q 038163 80 DDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYY 159 (207)
Q Consensus 80 ~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n 159 (207)
++|.+... .+. .+..+++|++|+++ +|.+++..+..+. .+++|+.|++++|
T Consensus 89 s~N~l~~~-------------------~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~L~~N 139 (220)
T 2v70_A 89 TSNRLENV-------------------QHK-------MFKGLESLKTLMLR--SNRITCVGNDSFI-GLSSVRLLSLYDN 139 (220)
T ss_dssp CSSCCCCC-------------------CGG-------GGTTCSSCCEEECT--TSCCCCBCTTSST-TCTTCSEEECTTS
T ss_pred CCCccCcc-------------------CHh-------HhcCCcCCCEEECC--CCcCCeECHhHcC-CCccCCEEECCCC
Confidence 88887622 222 56677788888888 8888766666666 7788888888888
Q ss_pred ccCcccccchhhhhcCCCCCceEEecCCcCCCC
Q 038163 160 TLGINSSETLNQGLCSLVHLQELYIASNDLRGS 192 (207)
Q Consensus 160 ~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~ 192 (207)
.++ +.. |. .+..+++|+.|++++|.+..+
T Consensus 140 ~l~--~~~-~~-~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 140 QIT--TVA-PG-AFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCC--CBC-TT-TTTTCTTCCEEECCSCCEECS
T ss_pred cCC--EEC-HH-HhcCCCCCCEEEecCcCCcCC
Confidence 887 333 44 777788888888888877644
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=150.46 Aligned_cols=188 Identities=22% Similarity=0.265 Sum_probs=131.5
Q ss_pred CCCCccCceecC-ccccCCCCCcEEecCCCcccCCCc-chhhhcCCCCCCEEEcCCCcCCcccccchhcccCC--C----
Q 038163 1 MSFNEINNLVVP-QGYNGLRKLKSLDLSGVGVRDGSK-LLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNF--T---- 72 (207)
Q Consensus 1 l~~n~~~~~~p~-~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l--~---- 72 (207)
|++|.+.+.+|. .+|..+++|++|++++|.+ ... .+..+.++++|++|++++|.+++..+ ..+..+ +
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l--~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~---~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI--RSLYLHPSFGKLNSLKSIDFSSNQIFLVCE---HELEPLQGKTLSF 178 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC--CCCCCCGGGGTCSSCCEEEEESSCCCCCCS---GGGHHHHHCSSCC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcc--cccccchhHhhCCCCCEEECCCCcCCeeCH---HHcccccCCccce
Confidence 578888876654 3578999999999999999 343 34678999999999999998877655 222211 2
Q ss_pred --------------------------CccEEEcCCCCCChHHHHhhc---------------------------------
Q 038163 73 --------------------------NMEYLKLDDSPLHISLLQSIA--------------------------------- 93 (207)
Q Consensus 73 --------------------------~L~~L~l~~~~~~~~~~~~l~--------------------------------- 93 (207)
.|++|++++|.+.+..+..+.
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 267777777755433322221
Q ss_pred --------ccccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCc
Q 038163 94 --------SIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGI 163 (207)
Q Consensus 94 --------~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~ 163 (207)
.++.| ++|.+.+..+. .+..+++|+.|+++ +|.+++..+..+. .+++|+.|++++|.+.
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~--~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~- 327 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSR-------VFETLKDLKVLNLA--YNKINKIADEAFY-GLDNLQVLNLSYNLLG- 327 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSC-------CSSSCCCCCEEEEE--SCCCCEECTTTTT-TCSSCCEEEEESCCCS-
T ss_pred hhhccccCCccEEECCCCcccccChh-------hhhcCCCCCEEECC--CCcCCCCChHHhc-CCCCCCEEECCCCCCC-
Confidence 11111 44444443343 67778888888888 8888766666777 7888888888888887
Q ss_pred ccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 164 NSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 164 ~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
+.. +. .+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 328 -~~~-~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 328 -ELY-SS-NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp -CCC-SC-SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred -ccC-HH-HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence 343 44 788888888888888888776667788888887663
No 75
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=3.1e-17 Score=121.49 Aligned_cols=146 Identities=19% Similarity=0.283 Sum_probs=112.8
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI 95 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 95 (207)
..++++++|++++|.+ ..+| .+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..
T Consensus 41 ~~l~~L~~L~l~~n~i---~~l~-~l~~l~~L~~L~l~~n~~~~~-----~~l~~l~~L~~L~l~~n~l~~~~------- 104 (197)
T 4ezg_A 41 AQMNSLTYITLANINV---TDLT-GIEYAHNIKDLTINNIHATNY-----NPISGLSNLERLRIMGKDVTSDK------- 104 (197)
T ss_dssp HHHHTCCEEEEESSCC---SCCT-TGGGCTTCSEEEEESCCCSCC-----GGGTTCTTCCEEEEECTTCBGGG-------
T ss_pred hhcCCccEEeccCCCc---cChH-HHhcCCCCCEEEccCCCCCcc-----hhhhcCCCCCEEEeECCccCccc-------
Confidence 5678899999999999 4556 688899999999999976643 46788999999999999987432
Q ss_pred ccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCc-cCcccccchhhhhc
Q 038163 96 FPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYT-LGINSSETLNQGLC 174 (207)
Q Consensus 96 ~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~-~~~~~~i~~~~~~~ 174 (207)
+. .+..+++|++|+++ +|.+++..+..+. .+++|+.|++++|. ++ .+ + .+.
T Consensus 105 ------------~~-------~l~~l~~L~~L~Ls--~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~---~~-~--~l~ 156 (197)
T 4ezg_A 105 ------------IP-------NLSGLTSLTLLDIS--HSAHDDSILTKIN-TLPKVNSIDLSYNGAIT---DI-M--PLK 156 (197)
T ss_dssp ------------SC-------CCTTCTTCCEEECC--SSBCBGGGHHHHT-TCSSCCEEECCSCTBCC---CC-G--GGG
T ss_pred ------------Ch-------hhcCCCCCCEEEec--CCccCcHhHHHHh-hCCCCCEEEccCCCCcc---cc-H--hhc
Confidence 33 66677788888888 8888776777777 78888888888887 55 66 4 477
Q ss_pred CCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 175 SLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 175 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
.+++|+.|++++|++.+ ++ .+..+++|+.|+
T Consensus 157 ~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 78888888888888875 33 567777777653
No 76
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2e-17 Score=133.51 Aligned_cols=166 Identities=21% Similarity=0.198 Sum_probs=101.3
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhc-CCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIG-SFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
+++.+. .+|... ...++.|++++|.+ ....+..+. .+++|++|++++|.++...+ ..+..+++|++|+|+
T Consensus 26 ~~~~l~-~iP~~~---~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~---~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 26 SKQQLP-NVPQSL---PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISS---EAFVPVPNLRYLDLS 96 (361)
T ss_dssp CSSCCS-SCCSSC---CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECC
T ss_pred CCCCcC-ccCccC---CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccCh---hhccCCCCCCEEECC
Confidence 456666 467543 24578899999988 344444565 78899999999998888776 678888889999999
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHH---HhcCCCcc
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQII---SESMSSLK 152 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l---~~~~~~L~ 152 (207)
+|.+....+..+..+++| ++|.+....+. .+..+++|+.|+++ +|.++...+..+ . .+++|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-------~~~~l~~L~~L~L~--~N~l~~l~~~~~~~~~-~l~~L~ 166 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN-------AFEDMAQLQKLYLS--QNQISRFPVELIKDGN-KLPKLM 166 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-------TTTTCTTCCEEECC--SSCCCSCCGGGTC-----CTTCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH-------HhCCcccCCEEECC--CCcCCeeCHHHhcCcc-cCCcCC
Confidence 988874322233333333 55555544444 55566666666666 666553222222 3 455666
Q ss_pred EEEccCCccCcccccchhhhhcCCCC--CceEEecCCcCC
Q 038163 153 YLSLSYYTLGINSSETLNQGLCSLVH--LQELYIASNDLR 190 (207)
Q Consensus 153 ~L~l~~n~~~~~~~i~~~~~~~~~~~--L~~L~l~~n~l~ 190 (207)
.|++++|.+. .+ +...+..++. ++.|++++|.+.
T Consensus 167 ~L~L~~N~l~---~l-~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLK---KL-PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCC---CC-CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCC---cc-CHHHhhhccHhhcceEEecCCCcc
Confidence 6666666665 44 3324555554 255666666654
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=1.6e-17 Score=142.15 Aligned_cols=161 Identities=19% Similarity=0.151 Sum_probs=101.3
Q ss_pred eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHH
Q 038163 9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISL 88 (207)
Q Consensus 9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 88 (207)
.||+.. . .++++|||++|.| ....+..|..+++|++|++++|.++...+ ..+..+++|++|+|++|.++...
T Consensus 45 ~vP~~l-p--~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 45 KIPDNL-P--FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp SCCSSS-C--TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCCEEC
T ss_pred ccCCCC-C--cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcCh---hHhcCCCCCCEEEccCCcCCCCC
Confidence 466442 1 4688999999999 34445678899999999999999988777 67888999999999999887433
Q ss_pred HHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCc-hhHHHHHhcCCCccEEEccCCccC
Q 038163 89 LQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNT-SFLQIISESMSSLKYLSLSYYTLG 162 (207)
Q Consensus 89 ~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~-~~~~~l~~~~~~L~~L~l~~n~~~ 162 (207)
+..+..+++| .+|.+++..+. .++++++|++|+++ +|.++. ..+..+. .++.|+.|++++|.++
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~-------~~~~L~~L~~L~Ls--~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENF-------PIGHLKTLKELNVA--HNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTC-------CCTTCTTCCEEECC--SSCCCCCCCCGGGG-GCTTCCEEECCSSCCC
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChh-------hhhcCcccCeeccc--cCccccCCCchhhc-cchhhhhhcccCcccc
Confidence 3333333333 55555543333 46666666666666 666543 2344445 5666666666666665
Q ss_pred cccccchhhhhcCCCC----CceEEecCCcCCC
Q 038163 163 INSSETLNQGLCSLVH----LQELYIASNDLRG 191 (207)
Q Consensus 163 ~~~~i~~~~~~~~~~~----L~~L~l~~n~l~~ 191 (207)
.+.+. .+..+.+ ...++++.|.+..
T Consensus 187 ---~~~~~-~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 187 ---SIYCT-DLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp ---EECGG-GGHHHHTCTTCCCEEECTTCCCCE
T ss_pred ---ccccc-cccchhhhhhhhhhhhcccCcccc
Confidence 33022 3333322 2355666666553
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=2.8e-18 Score=136.68 Aligned_cols=175 Identities=14% Similarity=0.078 Sum_probs=140.1
Q ss_pred cccCC--CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcc-cccchhcccCCCCccEEEcCCCCCChHHHH
Q 038163 14 GYNGL--RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET-VTITTQELHNFTNMEYLKLDDSPLHISLLQ 90 (207)
Q Consensus 14 ~~~~l--~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 90 (207)
.+..+ ++++.|++++|.+ ....+ .+..+++|++|++++|.+++. .+ ..+..+++|++|++++|.+.+..+.
T Consensus 63 ~~~~~~~~~l~~L~l~~n~l--~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~---~~~~~~~~L~~L~L~~~~l~~~~~~ 136 (336)
T 2ast_B 63 VTGRLLSQGVIAFRCPRSFM--DQPLA-EHFSPFRVQHMDLSNSVIEVSTLH---GILSQCSKLQNLSLEGLRLSDPIVN 136 (336)
T ss_dssp HHHHHHHTTCSEEECTTCEE--CSCCC-SCCCCBCCCEEECTTCEECHHHHH---HHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred HHHhhhhccceEEEcCCccc--cccch-hhccCCCCCEEEccCCCcCHHHHH---HHHhhCCCCCEEeCcCcccCHHHHH
Confidence 34555 8899999999999 34444 466799999999999998865 66 6788899999999999999988888
Q ss_pred hhcccccc-----cCC-cccce-eccccccccCCCCCCCccceeccccccc-ccCch-hHHHHHhcCC-CccEEEccCCc
Q 038163 91 SIASIFPL-----LKN-LSMIG-CEVNGVIRGQDFPHSKSLEHLDMEFMRI-ALNTS-FLQIISESMS-SLKYLSLSYYT 160 (207)
Q Consensus 91 ~l~~l~~L-----~~n-~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~n-~~~~~-~~~~l~~~~~-~L~~L~l~~n~ 160 (207)
.+..+++| .+| .+++. ++. .+..+++|++|+++ +| .+++. ++..+. .++ +|++|++++|.
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~-------~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQT-------LLSSCSRLDELNLS--WCFDFTEKHVQVAVA-HVSETITQLNLSGYR 206 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHH-------HHHHCTTCCEEECC--CCTTCCHHHHHHHHH-HSCTTCCEEECCSCG
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHH-------HHhcCCCCCEEcCC--CCCCcChHHHHHHHH-hcccCCCEEEeCCCc
Confidence 87777766 666 55542 444 56778999999999 99 88865 466677 899 99999999995
Q ss_pred --cCcccccchhhhhcCCCCCceEEecCCc-CCCCccccccCCCCCccCC
Q 038163 161 --LGINSSETLNQGLCSLVHLQELYIASND-LRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 161 --~~~~~~i~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~l~ 207 (207)
++ ++.+ +. .+..+++|+.|++++|. +.+..+..+..+++|++|+
T Consensus 207 ~~~~-~~~l-~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 207 KNLQ-KSDL-ST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp GGSC-HHHH-HH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred ccCC-HHHH-HH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 43 1245 55 77889999999999999 6767778888999998764
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=5.8e-17 Score=127.09 Aligned_cols=156 Identities=17% Similarity=0.241 Sum_probs=106.9
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.+.. ++ . +..+++|++|++++|.+ ..++. +..+++|++|++++|.+++ .+ .+..+++|++|++++
T Consensus 54 ~~~~i~~-~~-~-~~~l~~L~~L~L~~n~l---~~~~~-l~~l~~L~~L~l~~n~l~~-~~----~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 54 NNSDIKS-VQ-G-IQYLPNVTKLFLNGNKL---TDIKP-LANLKNLGWLFLDENKVKD-LS----SLKDLKKLKSLSLEH 121 (291)
T ss_dssp TTSCCCC-CT-T-GGGCTTCCEEECCSSCC---CCCGG-GTTCTTCCEEECCSSCCCC-GG----GGTTCTTCCEEECTT
T ss_pred cCCCccc-Ch-h-HhcCCCCCEEEccCCcc---CCCcc-cccCCCCCEEECCCCcCCC-Ch----hhccCCCCCEEECCC
Confidence 4566653 43 2 57778888888888887 23333 7777888888888887775 33 577778888888888
Q ss_pred CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163 82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL 156 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l 156 (207)
|.+... ..+..+++| ++|.+++. . .+..+++|+.|+++ +|.+++..+ +. .+++|+.|++
T Consensus 122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~-------~l~~l~~L~~L~L~--~N~l~~~~~--l~-~l~~L~~L~L 185 (291)
T 1h6t_A 122 NGISDI--NGLVHLPQLESLYLGNNKITDI--T-------VLSRLTKLDTLSLE--DNQISDIVP--LA-GLTKLQNLYL 185 (291)
T ss_dssp SCCCCC--GGGGGCTTCCEEECCSSCCCCC--G-------GGGGCTTCSEEECC--SSCCCCCGG--GT-TCTTCCEEEC
T ss_pred CcCCCC--hhhcCCCCCCEEEccCCcCCcc--h-------hhccCCCCCEEEcc--CCccccchh--hc-CCCccCEEEC
Confidence 877642 334444444 66666553 2 56677788888888 887775444 55 7778888888
Q ss_pred cCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163 157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~ 191 (207)
++|.++ .+ + .+..+++|+.|++++|++..
T Consensus 186 ~~N~i~---~l-~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 186 SKNHIS---DL-R--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCC---BC-G--GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCcCC---CC-h--hhccCCCCCEEECcCCcccC
Confidence 888887 55 4 46777888888888887764
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=3.8e-18 Score=129.94 Aligned_cols=173 Identities=11% Similarity=0.153 Sum_probs=134.4
Q ss_pred eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCc-CCcccccchhcccCCCCccEEEcCC-CCCCh
Q 038163 9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNN-FTETVTITTQELHNFTNMEYLKLDD-SPLHI 86 (207)
Q Consensus 9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~ 86 (207)
.+|. +. .++++|++++|.+ ....+..+..+++|++|++++|. ++...+ ..+..+++|++|++++ |.++.
T Consensus 25 ~ip~--~~--~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~---~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 25 RIPS--LP--PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLES---HSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp SCCC--CC--TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECT---TTEESCTTCCEEEEEEETTCCE
T ss_pred ccCC--CC--CcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCH---hHcCCCcCCcEEECCCCCCeeE
Confidence 4664 22 4899999999999 44444488899999999999997 887666 6788999999999998 88875
Q ss_pred HHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccc---eeccccccc-ccCchhHHHHHhcCCCcc-EEEc
Q 038163 87 SLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLE---HLDMEFMRI-ALNTSFLQIISESMSSLK-YLSL 156 (207)
Q Consensus 87 ~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~n-~~~~~~~~~l~~~~~~L~-~L~l 156 (207)
..+..+..+++| .+|.+++ +| .+..+.+|+ .|+++ +| .++...+..+. .+++|+ .|++
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~-lp--------~~~~l~~L~~L~~L~l~--~N~~l~~i~~~~~~-~l~~L~~~L~l 163 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKM-FP--------DLTKVYSTDIFFILEIT--DNPYMTSIPVNAFQ-GLCNETLTLKL 163 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCS-CC--------CCTTCCBCCSEEEEEEE--SCTTCCEECTTTTT-TTBSSEEEEEC
T ss_pred cCHHHhCCCCCCCEEeCCCCCCcc-cc--------ccccccccccccEEECC--CCcchhhcCccccc-chhcceeEEEc
Confidence 444555555555 6677765 44 456667777 99999 99 88765555677 889999 9999
Q ss_pred cCCccCcccccchhhhhcCCCCCceEEecCCc-CCCCccccccCC-CCCccCC
Q 038163 157 SYYTLGINSSETLNQGLCSLVHLQELYIASND-LRGSLPWCMANM-TSLRILD 207 (207)
Q Consensus 157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l-~~L~~l~ 207 (207)
++|.++ .+ +...+.. ++|+.|++++|+ +.+..+..|..+ ++|+.||
T Consensus 164 ~~n~l~---~i-~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 164 YNNGFT---SV-QGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp CSCCCC---EE-CTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred CCCCCc---cc-CHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 999998 77 6634554 899999999995 875556778888 8888764
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=6.3e-18 Score=135.83 Aligned_cols=185 Identities=13% Similarity=0.108 Sum_probs=122.4
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchh-hhcCCCCCCE-EEcCCCcCCcccccchhcccCCCCccEEE
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNS-LYLSSNNFTETVTITTQELHNFTNMEYLK 78 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~-L~l~~n~~~~~~~~~~~~l~~l~~L~~L~ 78 (207)
|++|++. .+|+.+|.++++|++|++++|.+ ...++. .|.++++++. +.+..|.++...| ..+..+++|++|+
T Consensus 37 Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i--~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~---~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 37 FVLTKLR-VIQKGAFSGFGDLEKIEISQNDV--LEVIEADVFSNLPKLHEIRIEKANNLLYINP---EAFQNLPNLQYLL 110 (350)
T ss_dssp EESCCCS-EECTTSSTTCTTCCEEEEECCTT--CCEECTTSBCSCTTCCEEEEEEETTCCEECT---TSBCCCTTCCEEE
T ss_pred ccCCcCC-CcCHHHHcCCCCCCEEECcCCCC--CCccChhHhhcchhhhhhhcccCCcccccCc---hhhhhcccccccc
Confidence 3566666 57767777777777777777776 344443 4566766654 5556677776666 5677788888888
Q ss_pred cCCCCCChHHHHhhcccccc------cCCcccceeccccccccCCCCCCC-ccceecccccccccCchhHHHHHhcCCCc
Q 038163 79 LDDSPLHISLLQSIASIFPL------LKNLSMIGCEVNGVIRGQDFPHSK-SLEHLDMEFMRIALNTSFLQIISESMSSL 151 (207)
Q Consensus 79 l~~~~~~~~~~~~l~~l~~L------~~n~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~n~~~~~~~~~l~~~~~~L 151 (207)
+++|.+.............+ ..+.+...-+. .+..+. .++.|+++ +|.++. ++.... ...++
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-------~f~~~~~~l~~L~L~--~N~i~~-i~~~~f-~~~~L 179 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-------SFVGLSFESVILWLN--KNGIQE-IHNSAF-NGTQL 179 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-------SSTTSBSSCEEEECC--SSCCCE-ECTTSS-TTEEE
T ss_pred ccccccccCCchhhcccchhhhhhhcccccccccccc-------chhhcchhhhhhccc--cccccC-CChhhc-cccch
Confidence 88887763222222222221 22334332222 555554 68889999 999984 444444 56789
Q ss_pred cEEEccC-CccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 152 KYLSLSY-YTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 152 ~~L~l~~-n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
+.+.+++ |.++ .+ |...|..+++|+.|++++|+++...+..+..+++|+.+
T Consensus 180 ~~l~l~~~n~l~---~i-~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 180 DELNLSDNNNLE---EL-PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp EEEECTTCTTCC---CC-CTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred hHHhhccCCccc---CC-CHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence 9999986 5565 88 76578999999999999999986545667777777654
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=7.1e-17 Score=126.59 Aligned_cols=169 Identities=22% Similarity=0.342 Sum_probs=134.5
Q ss_pred CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163 3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS 82 (207)
Q Consensus 3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~ 82 (207)
.+.+.+.++ +..++++++|++++|.+ ..++ .+..+++|++|++++|.+++. + .+..+++|++|++++|
T Consensus 33 ~~~~~~~~~---~~~l~~L~~L~l~~~~i---~~~~-~~~~l~~L~~L~L~~n~l~~~-~----~l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 33 KKSVTDAVT---QNELNSIDQIIANNSDI---KSVQ-GIQYLPNVTKLFLNGNKLTDI-K----PLANLKNLGWLFLDEN 100 (291)
T ss_dssp CSCTTSEEC---HHHHHTCCEEECTTSCC---CCCT-TGGGCTTCCEEECCSSCCCCC-G----GGTTCTTCCEEECCSS
T ss_pred CCCcccccc---hhhcCcccEEEccCCCc---ccCh-hHhcCCCCCEEEccCCccCCC-c----ccccCCCCCEEECCCC
Confidence 444554333 36789999999999999 3444 478899999999999999874 4 3789999999999999
Q ss_pred CCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163 83 PLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS 157 (207)
Q Consensus 83 ~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~ 157 (207)
.+.. +..+..+++| ++|.+.+. . .+..+++|+.|+++ +|.+++. ..+. .+++|+.|+++
T Consensus 101 ~l~~--~~~l~~l~~L~~L~L~~n~i~~~--~-------~l~~l~~L~~L~l~--~n~l~~~--~~l~-~l~~L~~L~L~ 164 (291)
T 1h6t_A 101 KVKD--LSSLKDLKKLKSLSLEHNGISDI--N-------GLVHLPQLESLYLG--NNKITDI--TVLS-RLTKLDTLSLE 164 (291)
T ss_dssp CCCC--GGGGTTCTTCCEEECTTSCCCCC--G-------GGGGCTTCCEEECC--SSCCCCC--GGGG-GCTTCSEEECC
T ss_pred cCCC--ChhhccCCCCCEEECCCCcCCCC--h-------hhcCCCCCCEEEcc--CCcCCcc--hhhc-cCCCCCEEEcc
Confidence 9874 2345555555 77777663 3 67789999999999 9999864 5566 89999999999
Q ss_pred CCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
+|.+. .+ +. +..+++|+.|++++|.+.+ ++. +..+++|+.|+
T Consensus 165 ~N~l~---~~-~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~ 206 (291)
T 1h6t_A 165 DNQIS---DI-VP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLE 206 (291)
T ss_dssp SSCCC---CC-GG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEE
T ss_pred CCccc---cc-hh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEE
Confidence 99998 55 43 7889999999999999985 444 88888888764
No 83
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=4.6e-17 Score=123.38 Aligned_cols=146 Identities=21% Similarity=0.218 Sum_probs=124.3
Q ss_pred CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccccccc
Q 038163 20 KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL 99 (207)
Q Consensus 20 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 99 (207)
.-+.++.+++.+ ..+|..+. ++|++|++++|.+++..| ..+..+++|++|++++|.+.
T Consensus 20 s~~~v~c~~~~l---~~ip~~~~--~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~N~l~-------------- 77 (229)
T 3e6j_A 20 SGTTVDCRSKRH---ASVPAGIP--TNAQILYLHDNQITKLEP---GVFDSLINLKELYLGSNQLG-------------- 77 (229)
T ss_dssp ETTEEECTTSCC---SSCCSCCC--TTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------------
T ss_pred eCCEeEccCCCc---CccCCCCC--CCCCEEEcCCCccCccCH---HHhhCccCCcEEECCCCCCC--------------
Confidence 356799999998 66776554 899999999999999888 78889999999999999986
Q ss_pred CCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCC
Q 038163 100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHL 179 (207)
Q Consensus 100 ~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L 179 (207)
.++.. .+..+++|++|+++ +|.++...+..+. .+++|+.|++++|.++ .+ |. .+..+++|
T Consensus 78 ------~i~~~------~~~~l~~L~~L~Ls--~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~---~l-p~-~~~~l~~L 137 (229)
T 3e6j_A 78 ------ALPVG------VFDSLTQLTVLDLG--TNQLTVLPSAVFD-RLVHLKELFMCCNKLT---EL-PR-GIERLTHL 137 (229)
T ss_dssp ------CCCTT------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCCC---SC-CT-TGGGCTTC
T ss_pred ------CcChh------hcccCCCcCEEECC--CCcCCccChhHhC-cchhhCeEeccCCccc---cc-Cc-ccccCCCC
Confidence 23321 57889999999999 9999865556667 8999999999999998 88 87 88999999
Q ss_pred ceEEecCCcCCCCccccccCCCCCccCC
Q 038163 180 QELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 180 ~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
+.|++++|++.+..+..+..+++|+.|+
T Consensus 138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 138 THLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 9999999999976667788899988763
No 84
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=6.8e-17 Score=121.75 Aligned_cols=146 Identities=13% Similarity=0.204 Sum_probs=122.8
Q ss_pred CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163 21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK 100 (207)
Q Consensus 21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 100 (207)
-+.++.+++.+ ..+|..+. +.++.|++++|.++...+ ..+..+++|++|++++|.+..
T Consensus 13 ~~~v~c~~~~l---~~iP~~l~--~~l~~L~l~~n~i~~i~~---~~~~~l~~L~~L~Ls~N~i~~-------------- 70 (220)
T 2v9t_B 13 NNIVDCRGKGL---TEIPTNLP--ETITEIRLEQNTIKVIPP---GAFSPYKKLRRIDLSNNQISE-------------- 70 (220)
T ss_dssp TTEEECTTSCC---SSCCSSCC--TTCCEEECCSSCCCEECT---TSSTTCTTCCEEECCSSCCCE--------------
T ss_pred CCEEEcCCCCc---CcCCCccC--cCCCEEECCCCcCCCcCH---hHhhCCCCCCEEECCCCcCCC--------------
Confidence 36789999999 56776554 789999999999998776 688899999999999999871
Q ss_pred CcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCc
Q 038163 101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ 180 (207)
Q Consensus 101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~ 180 (207)
..+. .+..+++|++|+++ +|.++...+..+. .+++|+.|++++|.++ .+.+. .+..+++|+
T Consensus 71 -----~~~~-------~~~~l~~L~~L~Ls--~N~l~~l~~~~f~-~l~~L~~L~L~~N~l~---~~~~~-~~~~l~~L~ 131 (220)
T 2v9t_B 71 -----LAPD-------AFQGLRSLNSLVLY--GNKITELPKSLFE-GLFSLQLLLLNANKIN---CLRVD-AFQDLHNLN 131 (220)
T ss_dssp -----ECTT-------TTTTCSSCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCCC---CCCTT-TTTTCTTCC
T ss_pred -----cCHH-------HhhCCcCCCEEECC--CCcCCccCHhHcc-CCCCCCEEECCCCCCC---EeCHH-HcCCCCCCC
Confidence 2344 78899999999999 9999854445566 8999999999999998 54154 899999999
Q ss_pred eEEecCCcCCCCccccccCCCCCccCC
Q 038163 181 ELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 181 ~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
.|++++|++.+..+..+..+++|+.++
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 999999999987778899999988764
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.7e-16 Score=125.41 Aligned_cols=169 Identities=20% Similarity=0.298 Sum_probs=134.1
Q ss_pred CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163 3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS 82 (207)
Q Consensus 3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~ 82 (207)
.+.+...++ +..+++|++|++++|.+ ..++ .+..+++|++|++++|.+++. + .+..+++|++|++++|
T Consensus 28 ~~~~~~~~~---~~~l~~L~~L~l~~~~i---~~l~-~~~~l~~L~~L~L~~n~i~~~-~----~~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 28 KSNVTDTVT---QADLDGITTLSAFGTGV---TTIE-GVQYLNNLIGLELKDNQITDL-A----PLKNLTKITELELSGN 95 (308)
T ss_dssp CSSTTSEEC---HHHHHTCCEEECTTSCC---CCCT-TGGGCTTCCEEECCSSCCCCC-G----GGTTCCSCCEEECCSC
T ss_pred CCCcCceec---HHHcCCcCEEEeeCCCc---cCch-hhhccCCCCEEEccCCcCCCC-h----hHccCCCCCEEEccCC
Confidence 344554333 35688999999999999 3455 588899999999999999864 4 3789999999999999
Q ss_pred CCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163 83 PLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS 157 (207)
Q Consensus 83 ~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~ 157 (207)
.+... ..+..+++| ++|.+.+ ++ .+..+++|+.|+++ +|.+++..+ +. .+++|+.|+++
T Consensus 96 ~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~--------~l~~l~~L~~L~l~--~n~l~~~~~--l~-~l~~L~~L~l~ 159 (308)
T 1h6u_A 96 PLKNV--SAIAGLQSIKTLDLTSTQITD-VT--------PLAGLSNLQVLYLD--LNQITNISP--LA-GLTNLQYLSIG 159 (308)
T ss_dssp CCSCC--GGGTTCTTCCEEECTTSCCCC-CG--------GGTTCTTCCEEECC--SSCCCCCGG--GG-GCTTCCEEECC
T ss_pred cCCCc--hhhcCCCCCCEEECCCCCCCC-ch--------hhcCCCCCCEEECC--CCccCcCcc--cc-CCCCccEEEcc
Confidence 98742 345555555 7777766 23 57789999999999 999986444 66 89999999999
Q ss_pred CCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
+|.++ .+ +. +..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 160 ~n~l~---~~-~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 201 (308)
T 1h6u_A 160 NAQVS---DL-TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVH 201 (308)
T ss_dssp SSCCC---CC-GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred CCcCC---CC-hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEE
Confidence 99998 66 43 7889999999999999986433 77888888764
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.7e-16 Score=136.00 Aligned_cols=158 Identities=17% Similarity=0.220 Sum_probs=124.1
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
+++|.+. .+| . +..+++|+.|+|++|.+ ..++. +..+++|+.|++++|.++.. ..+..+++|++|+|+
T Consensus 50 l~~n~i~-~l~-~-l~~l~~L~~L~Ls~N~l---~~~~~-l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 50 ANNSDIK-SVQ-G-IQYLPNVTKLFLNGNKL---TDIKP-LTNLKNLGWLFLDENKIKDL-----SSLKDLKKLKSLSLE 117 (605)
T ss_dssp CTTCCCC-CCT-T-GGGCTTCCEEECTTSCC---CCCGG-GGGCTTCCEEECCSSCCCCC-----TTSTTCTTCCEEECT
T ss_pred CcCCCCC-CCh-H-HccCCCCCEEEeeCCCC---CCChh-hccCCCCCEEECcCCCCCCC-----hhhccCCCCCEEEec
Confidence 3566666 354 3 68899999999999999 33443 88899999999999988863 367889999999999
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.+... ..+..+++| ++|.+.+. . .+..+++|+.|+++ +|.+++..+ +. .+++|+.|+
T Consensus 118 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~-------~l~~l~~L~~L~Ls--~N~l~~~~~--l~-~l~~L~~L~ 181 (605)
T 1m9s_A 118 HNGISDI--NGLVHLPQLESLYLGNNKITDI--T-------VLSRLTKLDTLSLE--DNQISDIVP--LA-GLTKLQNLY 181 (605)
T ss_dssp TSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G-------GGGSCTTCSEEECC--SSCCCCCGG--GT-TCTTCCEEE
T ss_pred CCCCCCC--ccccCCCccCEEECCCCccCCc--h-------hhcccCCCCEEECc--CCcCCCchh--hc-cCCCCCEEE
Confidence 9998742 345555554 77777664 3 67788999999999 999886655 66 889999999
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCC
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGS 192 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~ 192 (207)
+++|.+. .+ + .+..+++|+.|++++|.+.+.
T Consensus 182 Ls~N~i~---~l-~--~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 182 LSKNHIS---DL-R--ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCC---BC-G--GGTTCTTCSEEECCSEEEECC
T ss_pred CcCCCCC---CC-h--HHccCCCCCEEEccCCcCcCC
Confidence 9999998 66 4 578899999999999988764
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=7e-18 Score=136.10 Aligned_cols=195 Identities=21% Similarity=0.135 Sum_probs=101.3
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcch----hhhcCCC-CCCEEEcCCCcCCcccccchhcccCC----
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLL----QSIGSFS-SLNSLYLSSNNFTETVTITTQELHNF---- 71 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~l---- 71 (207)
|+.|.++|.+| +++...++|++|++++|.+ ....+ ..+..++ +|++|++++|.+++..+ ..+..+
T Consensus 5 ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~l~~~ 78 (362)
T 3goz_A 5 LTLHPGSNPVE-EFTSIPHGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNS---DELVQILAAI 78 (362)
T ss_dssp CCCCTTCCHHH-HHHTSCTTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH---HHHHHHHHTS
T ss_pred cccccchHHHH-HHHhCCCCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH---HHHHHHHhcc
Confidence 45677776655 4445555577777777777 33333 5566676 77777777777776544 333332
Q ss_pred -CCccEEEcCCCCCChHHHHh----h----cccccc--cCCcccceecc------------ccccccC------------
Q 038163 72 -TNMEYLKLDDSPLHISLLQS----I----ASIFPL--LKNLSMIGCEV------------NGVIRGQ------------ 116 (207)
Q Consensus 72 -~~L~~L~l~~~~~~~~~~~~----l----~~l~~L--~~n~~~~~~~~------------~~~~~~~------------ 116 (207)
++|++|++++|.+.+..+.. + ..++.| ++|.+++..+. ...+++.
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 66777777777765433221 1 233333 55555442211 0000000
Q ss_pred --CCCCCC-ccceecccccccccCchhHHH----HHhcC-CCccEEEccCCccCccc--ccchhhhhcC-CCCCceEEec
Q 038163 117 --DFPHSK-SLEHLDMEFMRIALNTSFLQI----ISESM-SSLKYLSLSYYTLGINS--SETLNQGLCS-LVHLQELYIA 185 (207)
Q Consensus 117 --~~~~~~-~L~~L~l~~~~n~~~~~~~~~----l~~~~-~~L~~L~l~~n~~~~~~--~i~~~~~~~~-~~~L~~L~l~ 185 (207)
.+..++ +|++|+++ +|.+++..+.. +. .+ ++|+.|++++|.++..+ .+ +. .+.. .++|+.|+++
T Consensus 159 ~~~l~~~~~~L~~L~Ls--~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~i~~~~~~~l-~~-~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 159 IQILAAIPANVNSLNLR--GNNLASKNCAELAKFLA-SIPASVTSLDLSANLLGLKSYAEL-AY-IFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHHHHTSCTTCCEEECT--TSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHH-HH-HHHHSCTTCCEEECC
T ss_pred HHHHhcCCccccEeeec--CCCCchhhHHHHHHHHH-hCCCCCCEEECCCCCCChhHHHHH-HH-HHhcCCCCceEEECc
Confidence 112232 56666666 66665444332 22 33 36666666666665100 13 33 3333 3467777777
Q ss_pred CCcCCCCcc----ccccCCCCCccC
Q 038163 186 SNDLRGSLP----WCMANMTSLRIL 206 (207)
Q Consensus 186 ~n~l~~~~p----~~~~~l~~L~~l 206 (207)
+|.+.+..+ ..+..+++|++|
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEE
Confidence 777665433 223445555544
No 88
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.70 E-value=5.1e-16 Score=124.13 Aligned_cols=178 Identities=19% Similarity=0.288 Sum_probs=100.3
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.+. .+| . +..+++|++|++++|.+ ..++. +..+++|++|++++|.++.. + .+..+++|++|++++
T Consensus 52 ~~~~i~-~~~-~-~~~~~~L~~L~l~~n~i---~~~~~-~~~l~~L~~L~L~~n~i~~~-~----~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 52 AGEKVA-SIQ-G-IEYLTNLEYLNLNGNQI---TDISP-LSNLVKLTNLYIGTNKITDI-S----ALQNLTNLRELYLNE 119 (347)
T ss_dssp CSSCCC-CCT-T-GGGCTTCCEEECCSSCC---CCCGG-GTTCTTCCEEECCSSCCCCC-G----GGTTCTTCSEEECTT
T ss_pred eCCccc-cch-h-hhhcCCccEEEccCCcc---ccchh-hhcCCcCCEEEccCCcccCc-h----HHcCCCcCCEEECcC
Confidence 455555 344 2 57778888888888877 33444 77778888888888877753 3 567777788888877
Q ss_pred CCCChHHHHhhcccccc-----cCCcccceecccc--------------ccccCCCCCCCccceecccccccccCchhHH
Q 038163 82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNG--------------VIRGQDFPHSKSLEHLDMEFMRIALNTSFLQ 142 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~ 142 (207)
|.+..... +..+++| ++|......+... ......+..+++|+.|+++ +|.+.+..+
T Consensus 120 n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~- 194 (347)
T 4fmz_A 120 DNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN--YNQIEDISP- 194 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECT--TSCCCCCGG-
T ss_pred CcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEcc--CCccccccc-
Confidence 77663211 3333333 4443222222100 0000023344555555555 555543222
Q ss_pred HHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 143 IISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 143 ~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
+. .+++|+.+++++|.+. .+ + .+..+++|+.|++++|.+.+..+ +..+++|+.|
T Consensus 195 -~~-~l~~L~~L~l~~n~l~---~~-~--~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 248 (347)
T 4fmz_A 195 -LA-SLTSLHYFTAYVNQIT---DI-T--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248 (347)
T ss_dssp -GG-GCTTCCEEECCSSCCC---CC-G--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred -cc-CCCccceeecccCCCC---CC-c--hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEE
Confidence 33 4555555555555555 33 2 25667777788888887775432 6667777655
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=9.3e-17 Score=118.88 Aligned_cols=143 Identities=16% Similarity=0.295 Sum_probs=116.2
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.+. .+| . +..+++|++|++++|.+ ..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 52 ~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~---~~~-~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 52 ANINVT-DLT-G-IEYAHNIKDLTINNIHA---TNY-NPISGLSNLERLRIMGKDVTSDKI---PNLSGLTSLTLLDISH 121 (197)
T ss_dssp ESSCCS-CCT-T-GGGCTTCSEEEEESCCC---SCC-GGGTTCTTCCEEEEECTTCBGGGS---CCCTTCTTCCEEECCS
T ss_pred cCCCcc-ChH-H-HhcCCCCCEEEccCCCC---Ccc-hhhhcCCCCCEEEeECCccCcccC---hhhcCCCCCCEEEecC
Confidence 567777 566 3 68999999999999988 333 478899999999999999998777 7889999999999999
Q ss_pred CCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccc-cCchhHHHHHhcCCCccEEEccCCc
Q 038163 82 SPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA-LNTSFLQIISESMSSLKYLSLSYYT 160 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~-~~~~~~~~l~~~~~~L~~L~l~~n~ 160 (207)
|.+.+..+ . .+..+++|++|+++ +|. ++ .++ .+. .+++|+.|++++|.
T Consensus 122 n~i~~~~~-------------------~-------~l~~l~~L~~L~L~--~n~~i~-~~~-~l~-~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 122 SAHDDSIL-------------------T-------KINTLPKVNSIDLS--YNGAIT-DIM-PLK-TLPELKSLNIQFDG 170 (197)
T ss_dssp SBCBGGGH-------------------H-------HHTTCSSCCEEECC--SCTBCC-CCG-GGG-GCSSCCEEECTTBC
T ss_pred CccCcHhH-------------------H-------HHhhCCCCCEEEcc--CCCCcc-ccH-hhc-CCCCCCEEECCCCC
Confidence 99985433 2 55677889999999 997 65 444 567 89999999999999
Q ss_pred cCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163 161 LGINSSETLNQGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~ 191 (207)
++ .+ + .+..+++|+.|++++|++.+
T Consensus 171 i~---~~-~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 171 VH---DY-R--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CC---CC-T--TGGGCSSCCEEEECBC----
T ss_pred Cc---Ch-H--HhccCCCCCEEEeeCcccCC
Confidence 98 66 4 57889999999999999864
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=5.8e-17 Score=120.83 Aligned_cols=151 Identities=18% Similarity=0.149 Sum_probs=122.0
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+. .+|+.+|..+++|++|++++|.+ ....+..+..+++|++|++++|.++...+ ..+..+++|++|+++
T Consensus 35 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 35 LETNSLK-SLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPN---GVFDKLTQLKELALN 108 (208)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECC
T ss_pred cCCCccC-cCChhhhcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCccCH---hHhcCccCCCEEEcC
Confidence 5788888 47777789999999999999999 44444567899999999999999997766 567899999999999
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.+....+..+..+++| ++|.+++..+. .+..+++|++|+++ +|.+.. .++.|+.|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------~~~~l~~L~~L~l~--~N~~~~--------~~~~l~~L~ 171 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG-------VFDRLTSLQYIWLH--DNPWDC--------TCPGIRYLS 171 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-------TTTTCTTCCEEECC--SCCBCC--------CTTTTHHHH
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHH-------HhccCCCccEEEec--CCCeec--------CCCCHHHHH
Confidence 999885444445555554 78888765444 68889999999999 998874 577889999
Q ss_pred ccCCccCcccccchhhhhcCCCC
Q 038163 156 LSYYTLGINSSETLNQGLCSLVH 178 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~ 178 (207)
++.|.++ +.+ |. .++.++.
T Consensus 172 ~~~n~~~--g~i-p~-~~~~l~~ 190 (208)
T 2o6s_A 172 EWINKHS--GVV-RN-SAGSVAP 190 (208)
T ss_dssp HHHHHCT--TTB-BC-TTSSBCT
T ss_pred HHHHhCC--cee-ec-cCccccC
Confidence 9999999 888 87 7766553
No 91
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=120.39 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=122.8
Q ss_pred CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163 21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK 100 (207)
Q Consensus 21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 100 (207)
-+++++++|.+ ..+|..+. ..+++|++++|.++...+. ..+..+++|++|++++|.++.
T Consensus 13 ~~~l~~s~n~l---~~iP~~~~--~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~i~~-------------- 71 (220)
T 2v70_A 13 GTTVDCSNQKL---NKIPEHIP--QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNKITD-------------- 71 (220)
T ss_dssp TTEEECCSSCC---SSCCSCCC--TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSCCCE--------------
T ss_pred CCEeEeCCCCc---ccCccCCC--CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCcCCE--------------
Confidence 46899999999 55776553 4678999999999987541 347889999999999999871
Q ss_pred CcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCc
Q 038163 101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ 180 (207)
Q Consensus 101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~ 180 (207)
..+. .+..+++|++|+++ +|.+++..+..+. .+++|+.|++++|.++ +.. +. .+..+++|+
T Consensus 72 -----i~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~--~~~-~~-~~~~l~~L~ 132 (220)
T 2v70_A 72 -----IEEG-------AFEGASGVNEILLT--SNRLENVQHKMFK-GLESLKTLMLRSNRIT--CVG-ND-SFIGLSSVR 132 (220)
T ss_dssp -----ECTT-------TTTTCTTCCEEECC--SSCCCCCCGGGGT-TCSSCCEEECTTSCCC--CBC-TT-SSTTCTTCS
T ss_pred -----ECHH-------HhCCCCCCCEEECC--CCccCccCHhHhc-CCcCCCEEECCCCcCC--eEC-Hh-HcCCCccCC
Confidence 1233 68889999999999 9999877777787 8999999999999998 444 55 899999999
Q ss_pred eEEecCCcCCCCccccccCCCCCccCC
Q 038163 181 ELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 181 ~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
.|++++|++.+..|..|..+++|+.|+
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 999999999988889999999998764
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=8.1e-18 Score=135.74 Aligned_cols=82 Identities=24% Similarity=0.275 Sum_probs=59.2
Q ss_pred CC-CccceecccccccccCch----hHHHHHhc-CCCccEEEccCCccCcccccch---hhhhcCCCCCceEEecCCcCC
Q 038163 120 HS-KSLEHLDMEFMRIALNTS----FLQIISES-MSSLKYLSLSYYTLGINSSETL---NQGLCSLVHLQELYIASNDLR 190 (207)
Q Consensus 120 ~~-~~L~~L~l~~~~n~~~~~----~~~~l~~~-~~~L~~L~l~~n~~~~~~~i~~---~~~~~~~~~L~~L~l~~n~l~ 190 (207)
.+ .+|+.|+++ +|.+++. ++..+. . .++|+.|++++|.++ +.. + ...+..+++|+.|++++|.+.
T Consensus 193 ~~~~~L~~L~Ls--~N~i~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~--~~~-~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 193 SIPASVTSLDLS--ANLLGLKSYAELAYIFS-SIPNHVVSLNLCLNCLH--GPS-LENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp TSCTTCCEEECT--TSCGGGSCHHHHHHHHH-HSCTTCCEEECCSSCCC--CCC-HHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred hCCCCCCEEECC--CCCCChhHHHHHHHHHh-cCCCCceEEECcCCCCC--cHH-HHHHHHHHhcCCCccEEEeccCCcc
Confidence 44 599999999 9999863 455666 5 459999999999998 322 2 114567899999999999955
Q ss_pred CC-------ccccccCCCCCccCC
Q 038163 191 GS-------LPWCMANMTSLRILD 207 (207)
Q Consensus 191 ~~-------~p~~~~~l~~L~~l~ 207 (207)
+. ++..+..+++|+.+|
T Consensus 267 ~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 267 NMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp TCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHhccCCceEEEe
Confidence 33 233556677777654
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=3.4e-17 Score=140.10 Aligned_cols=170 Identities=20% Similarity=0.199 Sum_probs=129.4
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.|. .+|+..|.++++|++|++++|.| ....+..|.++++|++|+|++|.++...+ ..+..+++|++|+++
T Consensus 59 Ls~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~---~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 59 LSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLVAV 132 (635)
T ss_dssp CTTSCCC-EECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECG---GGGTTCTTCCEEECT
T ss_pred eeCCCCC-CCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCH---HHhcCCCCCCEEECC
Confidence 6889998 58888899999999999999999 44445679999999999999999998776 678999999999999
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccce-eccccccccCCCCCCCccceecccccccccCchhHHHHH--hcCC-Cc
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIG-CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIIS--ESMS-SL 151 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~--~~~~-~L 151 (207)
+|.++...+..++.+++| ++|.+.+. .|. .+..++.|++|+++ +|.+++..+..+. .... ..
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-------YFSNLTNLEHLDLS--SNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-------GGGGCTTCCEEECC--SSCCCEECGGGGHHHHTCTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCch-------hhccchhhhhhccc--Cccccccccccccchhhhhhhh
Confidence 999885444445555555 77887653 455 67889999999999 9998865554333 0333 35
Q ss_pred cEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCC
Q 038163 152 KYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLR 190 (207)
Q Consensus 152 ~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~ 190 (207)
..++++.|.+. .+ +. .......+..+++.+|...
T Consensus 204 ~~~~ls~n~l~---~i-~~-~~~~~~~~~~l~l~~n~~~ 237 (635)
T 4g8a_A 204 LSLDLSLNPMN---FI-QP-GAFKEIRLHKLTLRNNFDS 237 (635)
T ss_dssp CEEECTTCCCC---EE-CT-TTTTTCEEEEEEEESCCSS
T ss_pred hhhhcccCccc---cc-Cc-ccccchhhhhhhhhccccc
Confidence 57888888887 55 44 3334445667777777544
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=1.2e-17 Score=135.63 Aligned_cols=192 Identities=18% Similarity=0.143 Sum_probs=119.7
Q ss_pred CCCCccCceecC---ccccCCCCCcEEecCCCcccC-CCcchhhh-------cCCCCCCEEEcCCCcCCc----ccccch
Q 038163 1 MSFNEINNLVVP---QGYNGLRKLKSLDLSGVGVRD-GSKLLQSI-------GSFSSLNSLYLSSNNFTE----TVTITT 65 (207)
Q Consensus 1 l~~n~~~~~~p~---~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~-------~~l~~L~~L~l~~n~~~~----~~~~~~ 65 (207)
|++|.+.+..+. .++..+++|++|++++|.+.. ...+|..+ ..+++|++|++++|.++. .+|
T Consensus 39 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~--- 115 (386)
T 2ca6_A 39 LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI--- 115 (386)
T ss_dssp CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHH---
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHH---
Confidence 345555544221 225577788888887765411 12334333 577888888888887776 344
Q ss_pred hcccCCCCccEEEcCCCCCChHHHHh----h------------cccccc--cCCccc-ceec---cccccccCCCCCCCc
Q 038163 66 QELHNFTNMEYLKLDDSPLHISLLQS----I------------ASIFPL--LKNLSM-IGCE---VNGVIRGQDFPHSKS 123 (207)
Q Consensus 66 ~~l~~l~~L~~L~l~~~~~~~~~~~~----l------------~~l~~L--~~n~~~-~~~~---~~~~~~~~~~~~~~~ 123 (207)
..+..+++|++|++++|.+....+.. + ..++.| ++|.++ ..++ . .+..+++
T Consensus 116 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------~l~~~~~ 188 (386)
T 2ca6_A 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK-------TFQSHRL 188 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH-------HHHHCTT
T ss_pred HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH-------HHHhCCC
Confidence 46667778888888888876433222 2 234433 666665 2222 2 4456778
Q ss_pred cceecccccccccCchh----HH-HHHhcCCCccEEEccCCccCcc--cccchhhhhcCCCCCceEEecCCcCCCC----
Q 038163 124 LEHLDMEFMRIALNTSF----LQ-IISESMSSLKYLSLSYYTLGIN--SSETLNQGLCSLVHLQELYIASNDLRGS---- 192 (207)
Q Consensus 124 L~~L~l~~~~n~~~~~~----~~-~l~~~~~~L~~L~l~~n~~~~~--~~i~~~~~~~~~~~L~~L~l~~n~l~~~---- 192 (207)
|+.|+++ +|.++... .. .+. .+++|+.|++++|.++.. ..+ +. .+..+++|+.|++++|.+.+.
T Consensus 189 L~~L~L~--~n~l~~~g~~~l~~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l-~~-~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 189 LHTVKMV--QNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSAL-AI-ALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp CCEEECC--SSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHH-HH-HGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred cCEEECc--CCCCCHhHHHHHHHHHhh-cCCCccEEECcCCCCCcHHHHHH-HH-HHccCCCcCEEECCCCCCchhhHHH
Confidence 8888888 88887432 22 455 678888888888888411 145 55 677888888888888888754
Q ss_pred ccccccC--CCCCccCC
Q 038163 193 LPWCMAN--MTSLRILD 207 (207)
Q Consensus 193 ~p~~~~~--l~~L~~l~ 207 (207)
++..+.. +++|+.|+
T Consensus 264 l~~~l~~~~~~~L~~L~ 280 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLR 280 (386)
T ss_dssp HHHHHHTCSSCCCCEEE
T ss_pred HHHHHhhccCCCeEEEE
Confidence 4455533 67777653
No 95
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=4.7e-16 Score=129.34 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=51.9
Q ss_pred CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163 118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197 (207)
Q Consensus 118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 197 (207)
+..+++|+.|+++ +|.+++..+ +. .+++|+.|++++|.++ .+ + .+..+++|+.|++++|++.+..| +
T Consensus 305 ~~~l~~L~~L~L~--~n~l~~~~~--~~-~l~~L~~L~l~~n~l~---~~-~--~l~~l~~L~~L~l~~n~l~~~~~--~ 371 (466)
T 1o6v_A 305 ISNLKNLTYLTLY--FNNISDISP--VS-SLTKLQRLFFYNNKVS---DV-S--SLANLTNINWLSAGHNQISDLTP--L 371 (466)
T ss_dssp GGGCTTCSEEECC--SSCCSCCGG--GG-GCTTCCEEECCSSCCC---CC-G--GGTTCTTCCEEECCSSCCCBCGG--G
T ss_pred hcCCCCCCEEECc--CCcCCCchh--hc-cCccCCEeECCCCccC---Cc-h--hhccCCCCCEEeCCCCccCccch--h
Confidence 4556677777777 777765444 45 6777777777777776 44 3 46677778888888887776555 6
Q ss_pred cCCCCCccC
Q 038163 198 ANMTSLRIL 206 (207)
Q Consensus 198 ~~l~~L~~l 206 (207)
..+++|+.|
T Consensus 372 ~~l~~L~~L 380 (466)
T 1o6v_A 372 ANLTRITQL 380 (466)
T ss_dssp TTCTTCCEE
T ss_pred hcCCCCCEE
Confidence 666766654
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.5e-16 Score=128.33 Aligned_cols=146 Identities=19% Similarity=0.125 Sum_probs=118.0
Q ss_pred CCCCccCceecCcccc-CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEc
Q 038163 1 MSFNEINNLVVPQGYN-GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKL 79 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~-~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l 79 (207)
|++|.+.+ +++.++. .+++|++|++++|.+ ....+..|..+++|++|++++|.++...+ ..+..+++|++|+|
T Consensus 46 Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L 119 (361)
T 2xot_A 46 LSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLHTLDE---FLFSDLQALEVLLL 119 (361)
T ss_dssp CCSSCCCE-ECTTSSSSCCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEEC
T ss_pred CCCCCCCc-cChhhhhhcccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCcCCcCCH---HHhCCCcCCCEEEC
Confidence 57899985 6667777 999999999999999 45555679999999999999999998766 67889999999999
Q ss_pred CCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCC---CCCCccceecccccccccCchhHHHHHhcCCC-
Q 038163 80 DDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDF---PHSKSLEHLDMEFMRIALNTSFLQIISESMSS- 150 (207)
Q Consensus 80 ~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~- 150 (207)
++|.+....+..+..+++| ++|.+++ +|.. .+ ..+++|+.|+++ +|.++...+..+. .++.
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~------~~~~~~~l~~L~~L~L~--~N~l~~l~~~~~~-~l~~~ 189 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVE------LIKDGNKLPKLMLLDLS--SNKLKKLPLTDLQ-KLPAW 189 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGG------GTC----CTTCCEEECC--SSCCCCCCHHHHH-HSCHH
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHH------HhcCcccCCcCCEEECC--CCCCCccCHHHhh-hccHh
Confidence 9999986555666666555 7888876 3331 34 568999999999 9999866667777 7876
Q ss_pred -ccEEEccCCccC
Q 038163 151 -LKYLSLSYYTLG 162 (207)
Q Consensus 151 -L~~L~l~~n~~~ 162 (207)
++.|++++|.+.
T Consensus 190 ~l~~l~l~~N~~~ 202 (361)
T 2xot_A 190 VKNGLYLHNNPLE 202 (361)
T ss_dssp HHTTEECCSSCEE
T ss_pred hcceEEecCCCcc
Confidence 488999999886
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=5.1e-16 Score=120.02 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=122.9
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.+.. ++ .+..+++|++|++++|.+ ..++ .+..+++|++|++++|.+++. + .+..+++|++|++++
T Consensus 27 ~~~~i~~-~~--~~~~l~~L~~L~l~~n~i---~~l~-~l~~l~~L~~L~L~~N~i~~~-~----~l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 27 GKQSVTD-LV--SQKELSGVQNFNGDNSNI---QSLA-GMQFFTNLKELHLSHNQISDL-S----PLKDLTKLEELSVNR 94 (263)
T ss_dssp TCSCTTS-EE--CHHHHTTCSEEECTTSCC---CCCT-TGGGCTTCCEEECCSSCCCCC-G----GGTTCSSCCEEECCS
T ss_pred cCCCccc-cc--chhhcCcCcEEECcCCCc---ccch-HHhhCCCCCEEECCCCccCCC-h----hhccCCCCCEEECCC
Confidence 4566664 44 267899999999999999 4455 688899999999999999874 4 378899999999999
Q ss_pred CCCChHHHHhhcccccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCC
Q 038163 82 SPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYY 159 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n 159 (207)
|.+...-......++.| ++|.+++. . .+..+++|+.|+++ +|.+++. + .+. .+++|+.|++++|
T Consensus 95 N~l~~l~~~~~~~L~~L~L~~N~l~~~--~-------~l~~l~~L~~L~Ls--~N~i~~~-~-~l~-~l~~L~~L~L~~N 160 (263)
T 1xeu_A 95 NRLKNLNGIPSACLSRLFLDNNELRDT--D-------SLIHLKNLEILSIR--NNKLKSI-V-MLG-FLSKLEVLDLHGN 160 (263)
T ss_dssp SCCSCCTTCCCSSCCEEECCSSCCSBS--G-------GGTTCTTCCEEECT--TSCCCBC-G-GGG-GCTTCCEEECTTS
T ss_pred CccCCcCccccCcccEEEccCCccCCC--h-------hhcCcccccEEECC--CCcCCCC-h-HHc-cCCCCCEEECCCC
Confidence 99874211111344444 77777662 2 67788999999999 9998854 3 566 8899999999999
Q ss_pred ccCcccccchhhhhcCCCCCceEEecCCcCCCC
Q 038163 160 TLGINSSETLNQGLCSLVHLQELYIASNDLRGS 192 (207)
Q Consensus 160 ~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~ 192 (207)
.++ .+ . .+..+++|+.|++++|++...
T Consensus 161 ~i~---~~-~--~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 161 EIT---NT-G--GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCC---BC-T--TSTTCCCCCEEEEEEEEEECC
T ss_pred cCc---ch-H--HhccCCCCCEEeCCCCcccCC
Confidence 998 54 2 578899999999999998865
No 98
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=6.7e-16 Score=128.27 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=46.9
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
+++|.+.+ +| . +..+++|++|++++|.++ .++ ++.+++|++|++++|.+++. .+..+++|++|+++
T Consensus 49 Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~---~~~--~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 49 CHNSSITD-MT-G-IEKLTGLTKLICTSNNIT---TLD--LSQNTNLTYLACDSNKLTNL------DVTPLTKLTYLNCD 114 (457)
T ss_dssp CCSSCCCC-CT-T-GGGCTTCSEEECCSSCCS---CCC--CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECC
T ss_pred ccCCCccc-Ch-h-hcccCCCCEEEccCCcCC---eEc--cccCCCCCEEECcCCCCcee------ecCCCCcCCEEECC
Confidence 45677775 44 3 577777777777777772 233 66777777777777777653 24556666666666
Q ss_pred CCCCCh
Q 038163 81 DSPLHI 86 (207)
Q Consensus 81 ~~~~~~ 86 (207)
+|.+.+
T Consensus 115 ~N~l~~ 120 (457)
T 3bz5_A 115 TNKLTK 120 (457)
T ss_dssp SSCCSC
T ss_pred CCcCCe
Confidence 666653
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=3.8e-16 Score=133.74 Aligned_cols=170 Identities=22% Similarity=0.345 Sum_probs=135.3
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
.++.+...++ +..+++|+.|++++|.+ ..++ .+..+++|+.|++++|.+++. + .+..+++|++|+|++
T Consensus 29 ~~~~i~~~~~---~~~L~~L~~L~l~~n~i---~~l~-~l~~l~~L~~L~Ls~N~l~~~-~----~l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 29 KKKSVTDAVT---QNELNSIDQIIANNSDI---KSVQ-GIQYLPNVTKLFLNGNKLTDI-K----PLTNLKNLGWLFLDE 96 (605)
T ss_dssp TCSCTTSEEC---HHHHTTCCCCBCTTCCC---CCCT-TGGGCTTCCEEECTTSCCCCC-G----GGGGCTTCCEEECCS
T ss_pred cCCCcccccc---hhcCCCCCEEECcCCCC---CCCh-HHccCCCCCEEEeeCCCCCCC-h----hhccCCCCCEEECcC
Confidence 3455565443 46789999999999999 3444 588999999999999999875 3 378899999999999
Q ss_pred CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163 82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL 156 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l 156 (207)
|.+.. +..+..+++| ++|.+.+ + . .+..+++|+.|+++ +|.+++. ..+. .+++|+.|++
T Consensus 97 N~l~~--l~~l~~l~~L~~L~Ls~N~l~~-l-~-------~l~~l~~L~~L~Ls--~N~l~~l--~~l~-~l~~L~~L~L 160 (605)
T 1m9s_A 97 NKIKD--LSSLKDLKKLKSLSLEHNGISD-I-N-------GLVHLPQLESLYLG--NNKITDI--TVLS-RLTKLDTLSL 160 (605)
T ss_dssp SCCCC--CTTSTTCTTCCEEECTTSCCCC-C-G-------GGGGCTTCSEEECC--SSCCCCC--GGGG-SCTTCSEEEC
T ss_pred CCCCC--ChhhccCCCCCEEEecCCCCCC-C-c-------cccCCCccCEEECC--CCccCCc--hhhc-ccCCCCEEEC
Confidence 99874 2355555555 7777765 2 3 67889999999999 9999864 5566 8999999999
Q ss_pred cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
++|.+. .+ +. +..+++|+.|+|++|.+.+. ..+..+++|+.|+
T Consensus 161 s~N~l~---~~-~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 161 EDNQIS---DI-VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 203 (605)
T ss_dssp CSSCCC---CC-GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEE
T ss_pred cCCcCC---Cc-hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEE
Confidence 999998 54 32 78899999999999999863 4588888888764
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=125.17 Aligned_cols=173 Identities=14% Similarity=0.116 Sum_probs=123.9
Q ss_pred CCCCcEEecCCCcccCCCcchhhh--cCCCCCCEEEcCCCcCCcccccc-hhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163 18 LRKLKSLDLSGVGVRDGSKLLQSI--GSFSSLNSLYLSSNNFTETVTIT-TQELHNFTNMEYLKLDDSPLHISLLQSIAS 94 (207)
Q Consensus 18 l~~L~~L~ls~n~i~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 94 (207)
+++|++|++++|.+ ....|..+ ..+++|++|++++|.+++..+.. ...+..+++|++|++++|.+....+..+..
T Consensus 90 ~~~L~~L~l~~n~l--~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 90 YSRLKELTLEDLKI--TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HSCCCEEEEESCCC--BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred cCceeEEEeeCCEe--ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 45689999999998 56777776 78899999999999988643310 023346889999999999987655556655
Q ss_pred cccc-----cCCcccce--eccccccccCCCCCCCccceecccccccccCch--hHHH-HHhcCCCccEEEccCCccCcc
Q 038163 95 IFPL-----LKNLSMIG--CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTS--FLQI-ISESMSSLKYLSLSYYTLGIN 164 (207)
Q Consensus 95 l~~L-----~~n~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~--~~~~-l~~~~~~L~~L~l~~n~~~~~ 164 (207)
+++| ++|.+.+. ++.. ..+..+++|++|+++ +|.++.. .+.. +. .+++|++|++++|.+.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~-----~~~~~l~~L~~L~Ls--~N~l~~l~~~~~~l~~-~l~~L~~L~Ls~N~l~-- 237 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAA-----LCPHKFPAIQNLALR--NTGMETPTGVCAALAA-AGVQPHSLDLSHNSLR-- 237 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTT-----SCTTSSCCCCSCBCC--SSCCCCHHHHHHHHHH-HTCCCSSEECTTSCCC--
T ss_pred CCCCCEEECCCCCCccchhhhHH-----HhhhcCCCCCEEECC--CCCCCchHHHHHHHHh-cCCCCCEEECCCCCCC--
Confidence 5555 77776542 2210 034678899999999 9998732 2222 45 7899999999999998
Q ss_pred cccchhhhhcCC---CCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 165 SSETLNQGLCSL---VHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 165 ~~i~~~~~~~~~---~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
+.+ |. .+..+ ++|+.|++++|++. .+|..+. ++|++||
T Consensus 238 ~~~-p~-~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 238 ATV-NP-SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp CCC-CS-CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred ccc-hh-hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 555 54 55555 69999999999998 5676553 5666553
No 101
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.65 E-value=8.1e-16 Score=127.80 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=104.1
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +| +..+++|++|++++|.+. . ++ ++.+++|++|++++|.+++. .+..+++|++|+++
T Consensus 71 Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~--~-~~--~~~l~~L~~L~L~~N~l~~l------~~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 71 CTSNNITT-LD---LSQNTNLTYLACDSNKLT--N-LD--VTPLTKLTYLNCDTNKLTKL------DVSQNPLLTYLNCA 135 (457)
T ss_dssp CCSSCCSC-CC---CTTCTTCSEEECCSSCCS--C-CC--CTTCTTCCEEECCSSCCSCC------CCTTCTTCCEEECT
T ss_pred ccCCcCCe-Ec---cccCCCCCEEECcCCCCc--e-ee--cCCCCcCCEEECCCCcCCee------cCCCCCcCCEEECC
Confidence 35566664 33 566777777777777762 2 22 56667777777777766652 24566667777777
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.+++.. +..+++| ++|...+.+ .+..+++|+.|+++ +|.+++ ++ +. .+++|+.|+
T Consensus 136 ~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---------~~~~l~~L~~L~ls--~n~l~~-l~--l~-~l~~L~~L~ 197 (457)
T 3bz5_A 136 RNTLTEID---VSHNTQLTELDCHLNKKITKL---------DVTPQTQLTTLDCS--FNKITE-LD--VS-QNKLLNRLN 197 (457)
T ss_dssp TSCCSCCC---CTTCTTCCEEECTTCSCCCCC---------CCTTCTTCCEEECC--SSCCCC-CC--CT-TCTTCCEEE
T ss_pred CCccceec---cccCCcCCEEECCCCCccccc---------ccccCCcCCEEECC--CCccce-ec--cc-cCCCCCEEE
Confidence 77666421 3333333 444332222 34566778888888 777775 33 55 677888888
Q ss_pred ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163 156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
+++|.++ .+ .+..+++|+.|++++|++.+ +| +..+++|+.|+
T Consensus 198 l~~N~l~---~~----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 198 CDTNNIT---KL----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp CCSSCCS---CC----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred CcCCcCC---ee----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 8888887 44 35677888888888888886 45 66777777653
No 102
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=3e-15 Score=124.45 Aligned_cols=76 Identities=25% Similarity=0.395 Sum_probs=53.0
Q ss_pred CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163 118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197 (207)
Q Consensus 118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 197 (207)
+..+++|+.|+++ +|.+++..+ +. .+++|+.|++++|.+. .+ + .+..+++|+.|++++|++.+. ..+
T Consensus 283 ~~~l~~L~~L~L~--~n~l~~~~~--~~-~l~~L~~L~L~~n~l~---~~-~--~~~~l~~L~~L~l~~n~l~~~--~~l 349 (466)
T 1o6v_A 283 LAGLTALTNLELN--ENQLEDISP--IS-NLKNLTYLTLYFNNIS---DI-S--PVSSLTKLQRLFFYNNKVSDV--SSL 349 (466)
T ss_dssp GTTCTTCSEEECC--SSCCSCCGG--GG-GCTTCSEEECCSSCCS---CC-G--GGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred ccCCCccCeEEcC--CCcccCchh--hc-CCCCCCEEECcCCcCC---Cc-h--hhccCccCCEeECCCCccCCc--hhh
Confidence 4566777777777 777765433 55 6778888888888777 33 2 256778888888888887754 456
Q ss_pred cCCCCCccC
Q 038163 198 ANMTSLRIL 206 (207)
Q Consensus 198 ~~l~~L~~l 206 (207)
..+++|+.|
T Consensus 350 ~~l~~L~~L 358 (466)
T 1o6v_A 350 ANLTNINWL 358 (466)
T ss_dssp TTCTTCCEE
T ss_pred ccCCCCCEE
Confidence 777777765
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=8.5e-16 Score=108.55 Aligned_cols=124 Identities=17% Similarity=0.211 Sum_probs=72.4
Q ss_pred CCCCEEEcCCCcCC-cccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCc
Q 038163 45 SSLNSLYLSSNNFT-ETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKS 123 (207)
Q Consensus 45 ~~L~~L~l~~n~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~ 123 (207)
++++.|++++|.++ +.+| ..+..+++|++|++++|.+.. + . .+..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~--------------------~-~-------~~~~l~~ 65 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE---GLTDEFEELEFLSTINVGLTS--------------------I-A-------NLPKLNK 65 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC---SCCTTCTTCCEEECTTSCCCC--------------------C-T-------TCCCCTT
T ss_pred ccCeEEEccCCcCChhHHH---HHHhhcCCCcEEECcCCCCCC--------------------c-h-------hhhcCCC
Confidence 45666666666655 3444 445556666666666666541 1 1 4555566
Q ss_pred cceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccch--hhhhcCCCCCceEEecCCcCCCCcc---cccc
Q 038163 124 LEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETL--NQGLCSLVHLQELYIASNDLRGSLP---WCMA 198 (207)
Q Consensus 124 L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~--~~~~~~~~~L~~L~l~~n~l~~~~p---~~~~ 198 (207)
|++|+++ +|.+++..|..+. .+++|+.|++++|.++ .+ + . .+..+++|+.|++++|.+.+..+ ..+.
T Consensus 66 L~~L~Ls--~n~i~~~~~~~~~-~l~~L~~L~ls~N~i~---~~-~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 137 (149)
T 2je0_A 66 LKKLELS--DNRVSGGLEVLAE-KCPNLTHLNLSGNKIK---DL-STIE-PLKKLENLKSLDLFNCEVTNLNDYRENVFK 137 (149)
T ss_dssp CCEEECC--SSCCCSCTHHHHH-HCTTCCEEECTTSCCC---SH-HHHG-GGGGCTTCCEEECTTCGGGGSTTHHHHHHH
T ss_pred CCEEECC--CCcccchHHHHhh-hCCCCCEEECCCCcCC---Ch-HHHH-HHhhCCCCCEEeCcCCcccchHHHHHHHHH
Confidence 6666666 6666654555555 5666666666666665 33 2 3 56666666666666666665433 3556
Q ss_pred CCCCCccCC
Q 038163 199 NMTSLRILD 207 (207)
Q Consensus 199 ~l~~L~~l~ 207 (207)
.+++|+.||
T Consensus 138 ~l~~L~~L~ 146 (149)
T 2je0_A 138 LLPQLTYLD 146 (149)
T ss_dssp HCTTCCEET
T ss_pred HCCCccccc
Confidence 666666554
No 104
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=1.3e-16 Score=132.07 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=37.8
Q ss_pred CCCCCccceecccccccccCchhHHHHHhc----CCCccEEEccCCccCccc----ccchhhhhcCCCCCceEEecCCcC
Q 038163 118 FPHSKSLEHLDMEFMRIALNTSFLQIISES----MSSLKYLSLSYYTLGINS----SETLNQGLCSLVHLQELYIASNDL 189 (207)
Q Consensus 118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~----~~~L~~L~l~~n~~~~~~----~i~~~~~~~~~~~L~~L~l~~n~l 189 (207)
+..+++|+.|+++ +|.+++..+..+.+. .++|+.|++++|.++ + .+ +. .+..+++|+.|++++|++
T Consensus 337 l~~~~~L~~L~Ls--~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~--~~~~~~l-~~-~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 337 LAQNRFLLELQIS--NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS--DSSCSSL-AA-TLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHCSSCCEEECC--SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC--HHHHHHH-HH-HHHHCCCCCEEECCSSSC
T ss_pred HhhCCCccEEEcc--CCccccccHHHHHHHHcCCCCceEEEECCCCCCC--hhhHHHH-HH-HHHhCCCccEEECCCCCC
Confidence 3345566666666 666654444433311 446666666666665 3 34 43 555566666666666666
Q ss_pred CC
Q 038163 190 RG 191 (207)
Q Consensus 190 ~~ 191 (207)
.+
T Consensus 411 ~~ 412 (461)
T 1z7x_W 411 GD 412 (461)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.8e-15 Score=108.00 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=104.4
Q ss_pred CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccc
Q 038163 17 GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIF 96 (207)
Q Consensus 17 ~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 96 (207)
..+++++|++++|.+.+ ..+|..+..+++|++|++++|.++.. + .+..+++|++|++++|.+.+.
T Consensus 22 ~~~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~l~~~-~----~~~~l~~L~~L~Ls~N~l~~~--------- 86 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV-S----NLPKLPKLKKLELSENRIFGG--------- 86 (168)
T ss_dssp CTTSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSCCCCC-S----SCCCCSSCCEEEEESCCCCSC---------
T ss_pred CcccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCCCCCh-h----hhccCCCCCEEECcCCcCchH---------
Confidence 35778889999998821 46777778888999999999888865 4 677888899999988888721
Q ss_pred cccCCcccceeccccccccCCCCCCCccceecccccccccCchh-HHHHHhcCCCccEEEccCCccCcccccchh---hh
Q 038163 97 PLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYYTLGINSSETLN---QG 172 (207)
Q Consensus 97 ~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~---~~ 172 (207)
+|. .+..+++|++|+++ +|.+++.. +..+. .+++|+.|++++|.++ .+ +. ..
T Consensus 87 ----------~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~l~-~l~~L~~L~l~~N~l~---~~-~~~~~~~ 142 (168)
T 2ell_A 87 ----------LDM-------LAEKLPNLTHLNLS--GNKLKDISTLEPLK-KLECLKSLDLFNCEVT---NL-NDYRESV 142 (168)
T ss_dssp ----------CCH-------HHHHCTTCCEEECB--SSSCCSSGGGGGGS-SCSCCCEEECCSSGGG---TS-TTHHHHH
T ss_pred ----------HHH-------HHhhCCCCCEEecc--CCccCcchhHHHHh-cCCCCCEEEeeCCcCc---ch-HHHHHHH
Confidence 232 34457788999999 88887532 25666 7888999999999887 44 32 26
Q ss_pred hcCCCCCceEEecCCcCCCCccc
Q 038163 173 LCSLVHLQELYIASNDLRGSLPW 195 (207)
Q Consensus 173 ~~~~~~L~~L~l~~n~l~~~~p~ 195 (207)
+..+++|+.|++++|.+.. +|.
T Consensus 143 ~~~l~~L~~L~l~~n~~~~-~~~ 164 (168)
T 2ell_A 143 FKLLPQLTYLDGYDREDQE-APD 164 (168)
T ss_dssp HTTCSSCCEETTEETTSCB-CCS
T ss_pred HHhCccCcEecCCCCChhh-ccc
Confidence 7888899999999988763 443
No 106
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=2.2e-15 Score=111.07 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=82.7
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchh-hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
++|.+. .+|..+ . .++++|++++|.+ ....+. .+..+++|++|++++|.+++..| ..+..+++|++|+++
T Consensus 16 s~~~l~-~ip~~~-~--~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 16 TGRGLK-EIPRDI-P--LHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEP---NAFEGASHIQELQLG 86 (192)
T ss_dssp TTSCCS-SCCSCC-C--TTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCT---TTTTTCTTCCEEECC
T ss_pred CCCCcC-cCccCC-C--CCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCH---hHcCCcccCCEEECC
Confidence 456664 566543 2 2677777777777 232222 36677777777777777777666 566777777777777
Q ss_pred CCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCc
Q 038163 81 DSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYT 160 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~ 160 (207)
+|.+. +..+. .+..+++|++|+++ +|.+++..+..+. .+++|+.|++++|.
T Consensus 87 ~N~l~-------------------~~~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 ENKIK-------------------EISNK-------MFLGLHQLKTLNLY--DNQISCVMPGSFE-HLNSLTSLNLASNP 137 (192)
T ss_dssp SCCCC-------------------EECSS-------SSTTCTTCCEEECC--SSCCCEECTTSST-TCTTCCEEECTTCC
T ss_pred CCcCC-------------------ccCHH-------HhcCCCCCCEEECC--CCcCCeeCHHHhh-cCCCCCEEEeCCCC
Confidence 77765 11222 56677788888888 8887766666666 77788888888887
Q ss_pred cC
Q 038163 161 LG 162 (207)
Q Consensus 161 ~~ 162 (207)
+.
T Consensus 138 l~ 139 (192)
T 1w8a_A 138 FN 139 (192)
T ss_dssp BC
T ss_pred cc
Confidence 77
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=2.4e-15 Score=127.82 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=88.4
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
|++|.+.+ +|+.+ .++|++|++++|.+ ..+| ..+++|++|++++|.+++ +| . +.. +|++|+++
T Consensus 66 Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l---~~ip---~~l~~L~~L~Ls~N~l~~-ip---~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 66 LNRLNLSS-LPDNL---PPQITVLEITQNAL---ISLP---ELPASLEYLDACDNRLST-LP---E-LPA--SLKHLDVD 128 (571)
T ss_dssp CCSSCCSC-CCSCC---CTTCSEEECCSSCC---SCCC---CCCTTCCEEECCSSCCSC-CC---C-CCT--TCCEEECC
T ss_pred eCCCCCCc-cCHhH---cCCCCEEECcCCCC---cccc---cccCCCCEEEccCCCCCC-cc---h-hhc--CCCEEECC
Confidence 45677775 66554 26677777777777 3455 446777777777777776 45 3 332 66666666
Q ss_pred CCCCChHHHHhhcccccc--cCCcccceeccc----ccccc--------CCCCCCCccceecccccccccCchhHHHHHh
Q 038163 81 DSPLHISLLQSIASIFPL--LKNLSMIGCEVN----GVIRG--------QDFPHSKSLEHLDMEFMRIALNTSFLQIISE 146 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L--~~n~~~~~~~~~----~~~~~--------~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~ 146 (207)
+|.+++ ++..+..+..| ++|.+++ +|.. ..+++ ..+. ++|+.|+++ +|.++ .+|. +.
T Consensus 129 ~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls--~N~L~-~lp~-~~- 199 (571)
T 3cvr_A 129 NNQLTM-LPELPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVS--TNLLE-SLPA-VP- 199 (571)
T ss_dssp SSCCSC-CCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECC--SSCCS-SCCC-CC-
T ss_pred CCcCCC-CCCcCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECc--CCCCC-chhh-HH-
Confidence 666553 22222233333 4555443 2210 00000 0111 456666666 66555 3333 22
Q ss_pred cCCCc-------cEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccC
Q 038163 147 SMSSL-------KYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMAN 199 (207)
Q Consensus 147 ~~~~L-------~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 199 (207)
. +| +.|++++|.++ .+ |. .+..+++|+.|++++|++.+.+|..+..
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N~l~---~l-p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCRENRIT---HI-PE-NILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ----------CCEEEECCSSCCC---CC-CG-GGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred H--hhhcccccceEEecCCCcce---ec-CH-HHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 1 34 66666666665 55 55 4555666666666666666655555544
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=7.2e-15 Score=113.56 Aligned_cols=133 Identities=18% Similarity=0.204 Sum_probs=107.2
Q ss_pred CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
+++|.+. .+| .+..+++|++|++++|.+ ..++. +..+++|++|++++|.+++. | .+.. ++|++|+++
T Consensus 48 l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i---~~~~~-l~~l~~L~~L~L~~N~l~~l-~----~~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 48 GDNSNIQ-SLA--GMQFFTNLKELHLSHNQI---SDLSP-LKDLTKLEELSVNRNRLKNL-N----GIPS-ACLSRLFLD 114 (263)
T ss_dssp CTTSCCC-CCT--TGGGCTTCCEEECCSSCC---CCCGG-GTTCSSCCEEECCSSCCSCC-T----TCCC-SSCCEEECC
T ss_pred CcCCCcc-cch--HHhhCCCCCEEECCCCcc---CCChh-hccCCCCCEEECCCCccCCc-C----cccc-CcccEEEcc
Confidence 4677777 466 378999999999999999 34554 89999999999999999974 3 2333 899999999
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~ 155 (207)
+|.+++. ..+..+++| ++|.+++. + .+..+++|+.|+++ +|.+++. ..+. .+++|+.|+
T Consensus 115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~--------~l~~l~~L~~L~L~--~N~i~~~--~~l~-~l~~L~~L~ 178 (263)
T 1xeu_A 115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V--------MLGFLSKLEVLDLH--GNEITNT--GGLT-RLKKVNWID 178 (263)
T ss_dssp SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G--------GGGGCTTCCEEECT--TSCCCBC--TTST-TCCCCCEEE
T ss_pred CCccCCC--hhhcCcccccEEECCCCcCCCC-h--------HHccCCCCCEEECC--CCcCcch--HHhc-cCCCCCEEe
Confidence 9998853 345555555 78888763 2 67788999999999 9999865 5566 889999999
Q ss_pred ccCCccC
Q 038163 156 LSYYTLG 162 (207)
Q Consensus 156 l~~n~~~ 162 (207)
+++|.+.
T Consensus 179 l~~N~~~ 185 (263)
T 1xeu_A 179 LTGQKCV 185 (263)
T ss_dssp EEEEEEE
T ss_pred CCCCccc
Confidence 9999997
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=8.5e-16 Score=110.72 Aligned_cols=127 Identities=18% Similarity=0.214 Sum_probs=102.3
Q ss_pred CCCCCCEEEcCCCcCC-cccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCC
Q 038163 43 SFSSLNSLYLSSNNFT-ETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHS 121 (207)
Q Consensus 43 ~l~~L~~L~l~~n~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~ 121 (207)
..++|+.|++++|.++ +.+| ..+..+++|++|++++|.+. .+ . .+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~---~~~~~l~~L~~L~l~~n~l~--------------------~~-~-------~~~~l 70 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE---GLTAEFVNLEFLSLINVGLI--------------------SV-S-------NLPKL 70 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS---SCCGGGGGCCEEEEESSCCC--------------------CC-S-------SCCCC
T ss_pred CcccCCEEECCCCCCChhhHH---HHHHhCCCCCEEeCcCCCCC--------------------Ch-h-------hhccC
Confidence 4578999999999988 5566 56778899999999999876 12 2 67788
Q ss_pred CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchh-hhhcCCCCCceEEecCCcCCCCcc---ccc
Q 038163 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN-QGLCSLVHLQELYIASNDLRGSLP---WCM 197 (207)
Q Consensus 122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~-~~~~~~~~L~~L~l~~n~l~~~~p---~~~ 197 (207)
++|++|+++ +|.+++..+..+. .+++|+.|++++|.++ .+ +. ..+..+++|+.|++++|.+.+..+ ..+
T Consensus 71 ~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~---~~-~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 143 (168)
T 2ell_A 71 PKLKKLELS--ENRIFGGLDMLAE-KLPNLTHLNLSGNKLK---DI-STLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143 (168)
T ss_dssp SSCCEEEEE--SCCCCSCCCHHHH-HCTTCCEEECBSSSCC---SS-GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH
T ss_pred CCCCEEECc--CCcCchHHHHHHh-hCCCCCEEeccCCccC---cc-hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH
Confidence 899999999 9999866777776 7999999999999998 54 41 278889999999999999986544 478
Q ss_pred cCCCCCccCC
Q 038163 198 ANMTSLRILD 207 (207)
Q Consensus 198 ~~l~~L~~l~ 207 (207)
..+++|+.||
T Consensus 144 ~~l~~L~~L~ 153 (168)
T 2ell_A 144 KLLPQLTYLD 153 (168)
T ss_dssp TTCSSCCEET
T ss_pred HhCccCcEec
Confidence 8888888765
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.8e-15 Score=106.92 Aligned_cols=130 Identities=19% Similarity=0.168 Sum_probs=104.8
Q ss_pred CCCCCcEEecCCCcccCC-CcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163 17 GLRKLKSLDLSGVGVRDG-SKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI 95 (207)
Q Consensus 17 ~l~~L~~L~ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 95 (207)
..+++++|++++|.+ . ..+|..+..+++|++|++++|.+++. + .+..+++|++|++++|.+.+.
T Consensus 15 ~~~~l~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~----~~~~l~~L~~L~Ls~n~i~~~-------- 79 (149)
T 2je0_A 15 TPSDVKELVLDNSRS--NEGKLEGLTDEFEELEFLSTINVGLTSI-A----NLPKLNKLKKLELSDNRVSGG-------- 79 (149)
T ss_dssp CGGGCSEEECTTCBC--BTTBCCSCCTTCTTCCEEECTTSCCCCC-T----TCCCCTTCCEEECCSSCCCSC--------
T ss_pred CCccCeEEEccCCcC--ChhHHHHHHhhcCCCcEEECcCCCCCCc-h----hhhcCCCCCEEECCCCcccch--------
Confidence 457799999999999 4 47888889999999999999999876 4 788899999999999998732
Q ss_pred ccccCCcccceeccccccccCCCCCCCccceecccccccccCch-hHHHHHhcCCCccEEEccCCccCcccccchh---h
Q 038163 96 FPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTS-FLQIISESMSSLKYLSLSYYTLGINSSETLN---Q 171 (207)
Q Consensus 96 ~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~-~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~---~ 171 (207)
+|. .+..+++|++|+++ +|.+++. .+..+. .+++|+.|++++|.++ .+ +. .
T Consensus 80 -----------~~~-------~~~~l~~L~~L~ls--~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~---~~-~~~~~~ 134 (149)
T 2je0_A 80 -----------LEV-------LAEKCPNLTHLNLS--GNKIKDLSTIEPLK-KLENLKSLDLFNCEVT---NL-NDYREN 134 (149)
T ss_dssp -----------THH-------HHHHCTTCCEEECT--TSCCCSHHHHGGGG-GCTTCCEEECTTCGGG---GS-TTHHHH
T ss_pred -----------HHH-------HhhhCCCCCEEECC--CCcCCChHHHHHHh-hCCCCCEEeCcCCccc---ch-HHHHHH
Confidence 222 34457789999999 9999863 346677 8999999999999998 44 32 3
Q ss_pred hhcCCCCCceEEecC
Q 038163 172 GLCSLVHLQELYIAS 186 (207)
Q Consensus 172 ~~~~~~~L~~L~l~~ 186 (207)
.+..+++|+.|++++
T Consensus 135 ~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 135 VFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEETTBC
T ss_pred HHHHCCCcccccCCC
Confidence 688899999998763
No 111
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=1.3e-16 Score=132.04 Aligned_cols=160 Identities=21% Similarity=0.188 Sum_probs=87.7
Q ss_pred hhhhcCCCCCCEEEcCCCcCCcccccch--hcccCCCCccEEEcCCCCCChH----HHHhhcccccc-----cCCcccce
Q 038163 38 LQSIGSFSSLNSLYLSSNNFTETVTITT--QELHNFTNMEYLKLDDSPLHIS----LLQSIASIFPL-----LKNLSMIG 106 (207)
Q Consensus 38 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L-----~~n~~~~~ 106 (207)
+..+..+++|++|++++|.+++.....+ .....+++|++|++++|.++.. .+..+..+++| ++|.+...
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 3444445555555555555443211000 1112355666666666665543 23333323333 44544332
Q ss_pred eccccccccCCC-CCCCccceecccccccccCch----hHHHHHhcCCCccEEEccCCccCcccccchhhhhc----C-C
Q 038163 107 CEVNGVIRGQDF-PHSKSLEHLDMEFMRIALNTS----FLQIISESMSSLKYLSLSYYTLGINSSETLNQGLC----S-L 176 (207)
Q Consensus 107 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~n~~~~~----~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~----~-~ 176 (207)
.+.. +. +.+ ...++|+.|+++ +|.+++. ++..+. .+++|+.|++++|.++ +.. +. .+. . .
T Consensus 300 ~~~~--l~-~~l~~~~~~L~~L~L~--~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~--~~~-~~-~l~~~l~~~~ 369 (461)
T 1z7x_W 300 GARL--LC-ETLLEPGCQLESLWVK--SCSFTAACCSHFSSVLA-QNRFLLELQISNNRLE--DAG-VR-ELCQGLGQPG 369 (461)
T ss_dssp HHHH--HH-HHHTSTTCCCCEEECT--TSCCBGGGHHHHHHHHH-HCSSCCEEECCSSBCH--HHH-HH-HHHHHHTSTT
T ss_pred HHHH--HH-HHhccCCccceeeEcC--CCCCchHHHHHHHHHHh-hCCCccEEEccCCccc--ccc-HH-HHHHHHcCCC
Confidence 1110 00 011 123578888888 8877754 345566 6788888888888887 332 22 232 2 6
Q ss_pred CCCceEEecCCcCCC----CccccccCCCCCccCC
Q 038163 177 VHLQELYIASNDLRG----SLPWCMANMTSLRILD 207 (207)
Q Consensus 177 ~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l~ 207 (207)
++|+.|++++|.+.+ .+|..+..+++|++||
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 789999999998875 5677777788887764
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.4e-15 Score=129.23 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=37.5
Q ss_pred ceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCC
Q 038163 125 EHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSL 176 (207)
Q Consensus 125 ~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~ 176 (207)
+.|+++ +|.++ .+|..+. .+++|+.|++++|.++ +.+ |. .+..+
T Consensus 210 ~~L~Ls--~N~l~-~lp~~l~-~l~~L~~L~L~~N~l~--~~~-p~-~l~~l 253 (571)
T 3cvr_A 210 IFFRCR--ENRIT-HIPENIL-SLDPTCTIILEDNPLS--SRI-RE-SLSQQ 253 (571)
T ss_dssp EEEECC--SSCCC-CCCGGGG-GSCTTEEEECCSSSCC--HHH-HH-HHHHH
T ss_pred eEEecC--CCcce-ecCHHHh-cCCCCCEEEeeCCcCC--CcC-HH-HHHHh
Confidence 999999 99998 5777788 7999999999999998 666 66 66554
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=2e-16 Score=138.31 Aligned_cols=149 Identities=23% Similarity=0.298 Sum_probs=98.5
Q ss_pred ecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHH
Q 038163 10 VVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLL 89 (207)
Q Consensus 10 ~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 89 (207)
+|+..+..++.|++|+|++|.+ ..+|..+..+++|++|+|++|.++ .+| ..+..+++|++|+|++|.++ .++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l---~~l~~~~~~l~~L~~L~Ls~N~l~-~lp---~~~~~l~~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQI---FNISANIFKYDFLTRLYLNGNSLT-ELP---AEIKNLSNLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp -------CCCCCCEEECTTSCC---SCCCGGGGGCCSCSCCBCTTSCCS-CCC---GGGGGGTTCCEEECTTSCCS-SCC
T ss_pred cChhhhccCCCCcEEECCCCCC---CCCChhhcCCCCCCEEEeeCCcCc-ccC---hhhhCCCCCCEEeCcCCcCC-ccC
Confidence 4567788899999999999999 467877788999999999999998 567 67888999999999999988 556
Q ss_pred Hhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCC-CccEEEccCCccCc
Q 038163 90 QSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMS-SLKYLSLSYYTLGI 163 (207)
Q Consensus 90 ~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~-~L~~L~l~~n~~~~ 163 (207)
..++.+.+| ++|.+. .+|. .+..+++|+.|+++ +|.+++..|..+. ... ....+++++|.+.
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~-~lp~-------~~~~l~~L~~L~L~--~N~l~~~~p~~~~-~~~~~~~~l~l~~N~l~- 354 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVT-TLPW-------EFGNLCNLQFLGVE--GNPLEKQFLKILT-EKSVTGLIFYLRDNRPE- 354 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCC-CCCS-------STTSCTTCCCEECT--TSCCCSHHHHHHH-HHHHHHHHHHHHHCCCC-
T ss_pred hhhcCCCCCCEEECCCCCCC-ccCh-------hhhcCCCccEEeCC--CCccCCCChHHHh-hcchhhhHHhhccCccc-
Confidence 666655555 666665 4566 67777788888888 7777776666654 221 2233567777776
Q ss_pred ccccchhhhhcCCCCCceEEecCC
Q 038163 164 NSSETLNQGLCSLVHLQELYIASN 187 (207)
Q Consensus 164 ~~~i~~~~~~~~~~~L~~L~l~~n 187 (207)
+.+ |. .++.|+++.|
T Consensus 355 -~~~-p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 355 -IPL-PH-------ERRFIEINTD 369 (727)
T ss_dssp -CCC-CC-------C---------
T ss_pred -CcC-cc-------ccceeEeecc
Confidence 555 43 2344555555
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.4e-14 Score=106.82 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=110.0
Q ss_pred CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchh-cccCCCCccEEEcCCCCCChHHHHhhccccccc
Q 038163 21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ-ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL 99 (207)
Q Consensus 21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 99 (207)
-++++++++.+ ..+|..+. ..+++|++++|.++...+ . .+..+++|++|++++|.+++
T Consensus 10 ~~~l~~s~~~l---~~ip~~~~--~~l~~L~l~~n~i~~~~~---~~~~~~l~~L~~L~Ls~N~l~~------------- 68 (192)
T 1w8a_A 10 GTTVDCTGRGL---KEIPRDIP--LHTTELLLNDNELGRISS---DGLFGRLPHLVKLELKRNQLTG------------- 68 (192)
T ss_dssp TTEEECTTSCC---SSCCSCCC--TTCSEEECCSCCCCSBCC---SCSGGGCTTCCEEECCSSCCCC-------------
T ss_pred CCEEEcCCCCc---CcCccCCC--CCCCEEECCCCcCCccCC---ccccccCCCCCEEECCCCCCCC-------------
Confidence 37899999999 66777554 389999999999987765 3 37889999999999999872
Q ss_pred CCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCC
Q 038163 100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHL 179 (207)
Q Consensus 100 ~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L 179 (207)
..|. .+..+++|++|+++ +|.+++..+..+. .+++|+.|++++|.++ +.. |. .+..+++|
T Consensus 69 ------~~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~--~~~-~~-~~~~l~~L 128 (192)
T 1w8a_A 69 ------IEPN-------AFEGASHIQELQLG--ENKIKEISNKMFL-GLHQLKTLNLYDNQIS--CVM-PG-SFEHLNSL 128 (192)
T ss_dssp ------BCTT-------TTTTCTTCCEEECC--SCCCCEECSSSST-TCTTCCEEECCSSCCC--EEC-TT-SSTTCTTC
T ss_pred ------cCHh-------HcCCcccCCEEECC--CCcCCccCHHHhc-CCCCCCEEECCCCcCC--eeC-HH-HhhcCCCC
Confidence 2344 78889999999999 9999877676677 8899999999999998 555 65 88899999
Q ss_pred ceEEecCCcCCCCcc
Q 038163 180 QELYIASNDLRGSLP 194 (207)
Q Consensus 180 ~~L~l~~n~l~~~~p 194 (207)
+.|++++|.+.++.+
T Consensus 129 ~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 129 TSLNLASNPFNCNCH 143 (192)
T ss_dssp CEEECTTCCBCCSGG
T ss_pred CEEEeCCCCccCcCc
Confidence 999999999886544
No 115
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=2.9e-14 Score=103.50 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=72.4
Q ss_pred CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163 21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK 100 (207)
Q Consensus 21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 100 (207)
.+.++++++.+ ..+|..+ .++|+.|++++|.+++..+ ..+..+++|++|++++|.++
T Consensus 9 ~~~l~~~~~~l---~~~p~~~--~~~l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~--------------- 65 (177)
T 2o6r_A 9 GTEIRCNSKGL---TSVPTGI--PSSATRLELESNKLQSLPH---GVFDKLTQLTKLSLSQNQIQ--------------- 65 (177)
T ss_dssp TTEEECCSSCC---SSCCTTC--CTTCSEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCC---------------
T ss_pred CCEEEecCCCC---ccCCCCC--CCCCcEEEeCCCcccEeCH---HHhcCcccccEEECCCCcce---------------
Confidence 34566666666 3344332 2566666666666665444 34556666666666666654
Q ss_pred CcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCc
Q 038163 101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ 180 (207)
Q Consensus 101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~ 180 (207)
.++.. .+..+++|+.|+++ +|.+++..+..+. .+++|+.|++++|.++ .+ +...+..+++|+
T Consensus 66 -----~~~~~------~~~~l~~L~~L~l~--~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~---~~-~~~~~~~l~~L~ 127 (177)
T 2o6r_A 66 -----SLPDG------VFDKLTKLTILYLH--ENKLQSLPNGVFD-KLTQLKELALDTNQLK---SV-PDGIFDRLTSLQ 127 (177)
T ss_dssp -----CCCTT------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCCS---CC-CTTTTTTCTTCC
T ss_pred -----EeChh------HccCCCccCEEECC--CCCccccCHHHhh-CCcccCEEECcCCcce---Ee-CHHHhcCCcccC
Confidence 11210 34555666666666 6666543333444 5566666666666665 44 332445566666
Q ss_pred eEEecCCcCCCCc
Q 038163 181 ELYIASNDLRGSL 193 (207)
Q Consensus 181 ~L~l~~n~l~~~~ 193 (207)
.|++++|.+.+..
T Consensus 128 ~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 128 KIWLHTNPWDCSC 140 (177)
T ss_dssp EEECCSSCBCCCH
T ss_pred EEEecCCCeeccC
Confidence 6666666665443
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=1.1e-14 Score=105.78 Aligned_cols=134 Identities=13% Similarity=0.182 Sum_probs=105.1
Q ss_pred ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163 15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS 94 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 94 (207)
+..+.++++|++++|.+ ..++......++|++|++++|.+++. + .+..+++|++|++++|.+.
T Consensus 15 ~~~~~~L~~L~l~~n~l---~~i~~~~~~~~~L~~L~Ls~N~l~~~-~----~l~~l~~L~~L~Ls~N~l~--------- 77 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI---PVIENLGATLDQFDAIDFSDNEIRKL-D----GFPLLRRLKTLLVNNNRIC--------- 77 (176)
T ss_dssp EECTTSCEEEECTTSCC---CSCCCGGGGTTCCSEEECCSSCCCEE-C----CCCCCSSCCEEECCSSCCC---------
T ss_pred cCCcCCceEEEeeCCCC---chhHHhhhcCCCCCEEECCCCCCCcc-c----ccccCCCCCEEECCCCccc---------
Confidence 57788999999999999 34554333345999999999999875 4 7888999999999999987
Q ss_pred cccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHH--HHHhcCCCccEEEccCCccCcccccchhh-
Q 038163 95 IFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQ--IISESMSSLKYLSLSYYTLGINSSETLNQ- 171 (207)
Q Consensus 95 l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~--~l~~~~~~L~~L~l~~n~~~~~~~i~~~~- 171 (207)
.++.. .+..+++|++|+++ +|.++ .++. .+. .+++|+.|++++|.+. .+ +..
T Consensus 78 -----------~~~~~------~~~~l~~L~~L~L~--~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~---~~-~~~~ 132 (176)
T 1a9n_A 78 -----------RIGEG------LDQALPDLTELILT--NNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT---NK-KHYR 132 (176)
T ss_dssp -----------EECSC------HHHHCTTCCEEECC--SCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG---GS-TTHH
T ss_pred -----------ccCcc------hhhcCCCCCEEECC--CCcCC-cchhhHhhh-cCCCCCEEEecCCCCC---Cc-HhHH
Confidence 23330 23677889999999 99886 4444 667 8899999999999997 66 551
Q ss_pred --hhcCCCCCceEEecCCcCC
Q 038163 172 --GLCSLVHLQELYIASNDLR 190 (207)
Q Consensus 172 --~~~~~~~L~~L~l~~n~l~ 190 (207)
.+..+++|+.|++++|...
T Consensus 133 ~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 133 LYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHHHHCTTCSEETTEECCHH
T ss_pred HHHHHHCCccceeCCCcCCHH
Confidence 3778899999999988765
No 117
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=2.1e-14 Score=123.32 Aligned_cols=70 Identities=24% Similarity=0.164 Sum_probs=48.9
Q ss_pred CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCC
Q 038163 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMT 201 (207)
Q Consensus 122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~ 201 (207)
++|+.|+++ +|.+++ +| . .+++|+.|++++|.++ .+ |. .+++|+.|++++|++. .+|..+..++
T Consensus 221 ~~L~~L~Ls--~N~L~~-lp---~-~l~~L~~L~Ls~N~L~---~l-p~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 221 SGLKELIVS--GNRLTS-LP---V-LPSELKELMVSGNRLT---SL-PM----LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp TTCCEEECC--SSCCSC-CC---C-CCTTCCEEECCSSCCS---CC-CC----CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred CCCCEEEcc--CCccCc-CC---C-CCCcCcEEECCCCCCC---cC-Cc----ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 567777777 777764 33 3 5667777777777776 66 43 4567778888888777 5677777777
Q ss_pred CCccCC
Q 038163 202 SLRILD 207 (207)
Q Consensus 202 ~L~~l~ 207 (207)
+|+.|+
T Consensus 285 ~L~~L~ 290 (622)
T 3g06_A 285 SETTVN 290 (622)
T ss_dssp TTCEEE
T ss_pred ccCEEE
Confidence 777653
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=3.1e-14 Score=118.20 Aligned_cols=110 Identities=19% Similarity=0.200 Sum_probs=50.8
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.+.+ +| . +..+++|++|++++|.+ ..+|.. ..+|++|++++|.+++ +| .+..+++|++|++++
T Consensus 139 ~~n~l~~-lp-~-~~~l~~L~~L~l~~N~l---~~lp~~---~~~L~~L~L~~n~l~~-l~----~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 139 SNNQLEK-LP-E-LQNSSFLKIIDVDNNSL---KKLPDL---PPSLEFIAAGNNQLEE-LP----ELQNLPFLTAIYADN 204 (454)
T ss_dssp CSSCCSS-CC-C-CTTCTTCCEEECCSSCC---SCCCCC---CTTCCEEECCSSCCSS-CC----CCTTCTTCCEEECCS
T ss_pred cCCCCCC-Cc-c-cCCCCCCCEEECCCCcC---cccCCC---cccccEEECcCCcCCc-Cc----cccCCCCCCEEECCC
Confidence 3444443 44 2 45555555555555555 123322 1345555555555444 23 345555566666655
Q ss_pred CCCChHHHHhhcccccc--cCCcccceeccccccccCCCCCCCccceecccccccccC
Q 038163 82 SPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN 137 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~ 137 (207)
|.+.+ .+.....++.| ++|.+. .+| .+..+++|++|+++ +|.++
T Consensus 205 N~l~~-l~~~~~~L~~L~l~~n~l~-~lp--------~~~~l~~L~~L~l~--~N~l~ 250 (454)
T 1jl5_A 205 NSLKK-LPDLPLSLESIVAGNNILE-ELP--------ELQNLPFLTTIYAD--NNLLK 250 (454)
T ss_dssp SCCSS-CCCCCTTCCEEECCSSCCS-SCC--------CCTTCTTCCEEECC--SSCCS
T ss_pred CcCCc-CCCCcCcccEEECcCCcCC-ccc--------ccCCCCCCCEEECC--CCcCC
Confidence 55542 22222233333 444443 222 34455556666666 55554
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=4.3e-14 Score=104.29 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=66.7
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.+. .+|..+ .+++++|++++|.+ ..+|..+..+++|++|++++|.++...+ ..+..+++|++|++++
T Consensus 18 ~~~~l~-~ip~~~---~~~l~~L~L~~n~i---~~ip~~~~~l~~L~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 18 SNKGLK-VLPKGI---PRDVTELYLDGNQF---TLVPKELSNYKHLTLIDLSNNRISTLSN---QSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTSCCS-SCCSCC---CTTCCEEECCSSCC---CSCCGGGGGCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCS
T ss_pred CCCCCC-cCCCCC---CCCCCEEECCCCcC---chhHHHhhcccCCCEEECCCCcCCEeCH---hHccCCCCCCEEECCC
Confidence 344444 455432 24566666666666 3455566666666666666666665555 4556666666666666
Q ss_pred CCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCcc
Q 038163 82 SPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL 161 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~ 161 (207)
|.++.. .+. .+..+++|++|+++ +|.++...+..+. .+++|+.|++++|.+
T Consensus 88 N~l~~i-------------------~~~-------~f~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NRLRCI-------------------PPR-------TFDGLKSLRLLSLH--GNDISVVPEGAFN-DLSALSHLAIGANPL 138 (193)
T ss_dssp SCCCBC-------------------CTT-------TTTTCTTCCEEECC--SSCCCBCCTTTTT-TCTTCCEEECCSSCE
T ss_pred CccCEe-------------------CHH-------HhCCCCCCCEEECC--CCCCCeeChhhhh-cCccccEEEeCCCCe
Confidence 665511 122 45555556666666 5555533333344 455566666655555
Q ss_pred C
Q 038163 162 G 162 (207)
Q Consensus 162 ~ 162 (207)
.
T Consensus 139 ~ 139 (193)
T 2wfh_A 139 Y 139 (193)
T ss_dssp E
T ss_pred e
Confidence 3
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=3.8e-14 Score=104.57 Aligned_cols=129 Identities=23% Similarity=0.287 Sum_probs=108.9
Q ss_pred CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163 21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK 100 (207)
Q Consensus 21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 100 (207)
-++++++++.+ ..+|..+. ++|++|++++|.++. +| ..+..+++|++|++++|.++.
T Consensus 12 ~~~l~~~~~~l---~~ip~~~~--~~l~~L~L~~n~i~~-ip---~~~~~l~~L~~L~Ls~N~i~~-------------- 68 (193)
T 2wfh_A 12 DTVVRCSNKGL---KVLPKGIP--RDVTELYLDGNQFTL-VP---KELSNYKHLTLIDLSNNRIST-------------- 68 (193)
T ss_dssp TTEEECTTSCC---SSCCSCCC--TTCCEEECCSSCCCS-CC---GGGGGCTTCCEEECCSSCCCC--------------
T ss_pred CCEEEcCCCCC---CcCCCCCC--CCCCEEECCCCcCch-hH---HHhhcccCCCEEECCCCcCCE--------------
Confidence 36899999999 56776543 689999999999984 56 688899999999999999871
Q ss_pred CcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCc
Q 038163 101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ 180 (207)
Q Consensus 101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~ 180 (207)
..+. .+..+++|+.|+++ +|.++...+..+. .+++|+.|++++|.++ .+ +...+..+++|+
T Consensus 69 -----i~~~-------~f~~l~~L~~L~Ls--~N~l~~i~~~~f~-~l~~L~~L~L~~N~l~---~~-~~~~~~~l~~L~ 129 (193)
T 2wfh_A 69 -----LSNQ-------SFSNMTQLLTLILS--YNRLRCIPPRTFD-GLKSLRLLSLHGNDIS---VV-PEGAFNDLSALS 129 (193)
T ss_dssp -----CCTT-------TTTTCTTCCEEECC--SSCCCBCCTTTTT-TCTTCCEEECCSSCCC---BC-CTTTTTTCTTCC
T ss_pred -----eCHh-------HccCCCCCCEEECC--CCccCEeCHHHhC-CCCCCCEEECCCCCCC---ee-ChhhhhcCcccc
Confidence 1223 68889999999999 9999977777787 8999999999999998 66 554788999999
Q ss_pred eEEecCCcCCC
Q 038163 181 ELYIASNDLRG 191 (207)
Q Consensus 181 ~L~l~~n~l~~ 191 (207)
.|++++|.+..
T Consensus 130 ~L~L~~N~~~C 140 (193)
T 2wfh_A 130 HLAIGANPLYC 140 (193)
T ss_dssp EEECCSSCEEC
T ss_pred EEEeCCCCeec
Confidence 99999998864
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.53 E-value=9.3e-14 Score=115.29 Aligned_cols=96 Identities=20% Similarity=0.176 Sum_probs=51.1
Q ss_pred CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccc
Q 038163 19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL 98 (207)
Q Consensus 19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 98 (207)
++|++|++++|.+ ..++.. .++|++|++++|.+++ +| .+..+++|++|++++|.+.+ .+..+..++.|
T Consensus 111 ~~L~~L~l~~n~l---~~l~~~---~~~L~~L~L~~n~l~~-lp----~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNL---KALSDL---PPLLEYLGVSNNQLEK-LP----ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCC---SCCCSC---CTTCCEEECCSSCCSS-CC----CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEE
T ss_pred CCCcEEECCCCcc---CcccCC---CCCCCEEECcCCCCCC-Cc----ccCCCCCCCEEECCCCcCcc-cCCCcccccEE
Confidence 4455555555555 112211 1466666666666665 44 46666777777777776653 33334445544
Q ss_pred --cCCcccceeccccccccCCCCCCCccceecccccccccC
Q 038163 99 --LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN 137 (207)
Q Consensus 99 --~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~ 137 (207)
++|.+.+ +| .+..+++|++|+++ +|.++
T Consensus 179 ~L~~n~l~~-l~--------~~~~l~~L~~L~l~--~N~l~ 208 (454)
T 1jl5_A 179 AAGNNQLEE-LP--------ELQNLPFLTAIYAD--NNSLK 208 (454)
T ss_dssp ECCSSCCSS-CC--------CCTTCTTCCEEECC--SSCCS
T ss_pred ECcCCcCCc-Cc--------cccCCCCCCEEECC--CCcCC
Confidence 5555554 23 34455555555555 55544
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=6.9e-17 Score=119.69 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=55.9
Q ss_pred hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCC
Q 038163 40 SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFP 119 (207)
Q Consensus 40 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~ 119 (207)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. . +|. .+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~----~~~~l~~L~~L~l~~n~l~-~-------------------l~~-------~~~ 90 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS----SLSGMENLRILSLGRNLIK-K-------------------IEN-------LDA 90 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC----CHHHHTTCCEEEEEEEEEC-S-------------------CSS-------HHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc----ccccCCCCCEEECCCCCcc-c-------------------ccc-------hhh
Confidence 56666666666666666655 33 4455566666666666554 1 121 222
Q ss_pred CCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchh-hhhcCCCCCceEEecCCcCCCC
Q 038163 120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN-QGLCSLVHLQELYIASNDLRGS 192 (207)
Q Consensus 120 ~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~-~~~~~~~~L~~L~l~~n~l~~~ 192 (207)
.+++|+.|+++ +|.+++ ++ .+. .+++|+.|++++|.+. .+ +. ..+..+++|+.|++++|.+.+.
T Consensus 91 ~~~~L~~L~L~--~N~l~~-l~-~~~-~l~~L~~L~l~~N~i~---~~-~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 91 VADTLEELWIS--YNQIAS-LS-GIE-KLVNLRVLYMSNNKIT---NW-GEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHCSEEEEE--EEECCC-HH-HHH-HHHHSSEEEESEEECC---CH-HHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCcCCEEECc--CCcCCc-CC-ccc-cCCCCCEEECCCCcCC---ch-hHHHHHhcCCCCCEEEecCCccccc
Confidence 23445555555 555543 22 333 4455555555555554 32 21 1344555555555555555433
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=8.5e-14 Score=101.03 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=103.4
Q ss_pred hhcCCCCCCEEEcCCCcCCcccccchhcccCCC-CccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCC
Q 038163 40 SIGSFSSLNSLYLSSNNFTETVTITTQELHNFT-NMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDF 118 (207)
Q Consensus 40 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~ 118 (207)
.+..+.+|+.|++++|.++.. + .+..+. +|++|++++|.+. .+ . .+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~----~~~~~~~~L~~L~Ls~N~l~--------------------~~-~-------~l 60 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-E----NLGATLDQFDAIDFSDNEIR--------------------KL-D-------GF 60 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-C----CGGGGTTCCSEEECCSSCCC--------------------EE-C-------CC
T ss_pred hcCCcCCceEEEeeCCCCchh-H----HhhhcCCCCCEEECCCCCCC--------------------cc-c-------cc
Confidence 356788999999999999864 5 345444 9999999999987 22 3 77
Q ss_pred CCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchh-hhhcCCCCCceEEecCCcCCCCccc--
Q 038163 119 PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN-QGLCSLVHLQELYIASNDLRGSLPW-- 195 (207)
Q Consensus 119 ~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~-~~~~~~~~L~~L~l~~n~l~~~~p~-- 195 (207)
..+++|++|+++ +|.++...+..+. .+++|+.|++++|.++ .+ +. ..+..+++|+.|++++|.+.. +|.
T Consensus 61 ~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~---~~-~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~ 132 (176)
T 1a9n_A 61 PLLRRLKTLLVN--NNRICRIGEGLDQ-ALPDLTELILTNNSLV---EL-GDLDPLASLKSLTYLCILRNPVTN-KKHYR 132 (176)
T ss_dssp CCCSSCCEEECC--SSCCCEECSCHHH-HCTTCCEEECCSCCCC---CG-GGGGGGGGCTTCCEEECCSSGGGG-STTHH
T ss_pred ccCCCCCEEECC--CCcccccCcchhh-cCCCCCEEECCCCcCC---cc-hhhHhhhcCCCCCEEEecCCCCCC-cHhHH
Confidence 888999999999 9999855445557 8999999999999998 66 53 267889999999999999984 465
Q ss_pred --cccCCCCCccCC
Q 038163 196 --CMANMTSLRILD 207 (207)
Q Consensus 196 --~~~~l~~L~~l~ 207 (207)
.+..+++|+.||
T Consensus 133 ~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 133 LYVIYKVPQVRVLD 146 (176)
T ss_dssp HHHHHHCTTCSEET
T ss_pred HHHHHHCCccceeC
Confidence 488899998875
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=1.6e-14 Score=126.21 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=62.6
Q ss_pred chhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccC
Q 038163 37 LLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQ 116 (207)
Q Consensus 37 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~ 116 (207)
.+..+..++.|+.|+|++|.+.. +| ..+..+++|++|+|++|.++ .+ |.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~-l~---~~~~~l~~L~~L~Ls~N~l~-~l-------------------p~------- 264 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN-IS---ANIFKYDFLTRLYLNGNSLT-EL-------------------PA------- 264 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC-CC---GGGGGCCSCSCCBCTTSCCS-CC-------------------CG-------
T ss_pred ChhhhccCCCCcEEECCCCCCCC-CC---hhhcCCCCCCEEEeeCCcCc-cc-------------------Ch-------
Confidence 34556666777777777776663 34 34556667777777777665 33 33
Q ss_pred CCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163 117 DFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC 196 (207)
Q Consensus 117 ~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 196 (207)
.+..+++|++|+|+ +|.++ .+|..+. .+++|+.|++++|.++ .+ |. .+..+++|+.|+|++|.+.+.+|..
T Consensus 265 ~~~~l~~L~~L~Ls--~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~---~l-p~-~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 265 EIKNLSNLRVLDLS--HNRLT-SLPAELG-SCFQLKYFYFFDNMVT---TL-PW-EFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp GGGGGTTCCEEECT--TSCCS-SCCSSGG-GGTTCSEEECCSSCCC---CC-CS-STTSCTTCCCEECTTSCCCSHHHHH
T ss_pred hhhCCCCCCEEeCc--CCcCC-ccChhhc-CCCCCCEEECCCCCCC---cc-Ch-hhhcCCCccEEeCCCCccCCCChHH
Confidence 44445555555555 55554 3444444 4555555555555554 44 44 4555555555555555555444433
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=3.3e-13 Score=97.91 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=98.2
Q ss_pred CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163 2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD 81 (207)
Q Consensus 2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~ 81 (207)
++|.+. .+|... .+++++|++++|.+ ....+..+..+++|++|++++|.++...+ ..+..+++|++|++++
T Consensus 15 ~~~~l~-~~p~~~---~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 15 NSKGLT-SVPTGI---PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPD---GVFDKLTKLTILYLHE 85 (177)
T ss_dssp CSSCCS-SCCTTC---CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCS
T ss_pred cCCCCc-cCCCCC---CCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeCh---hHccCCCccCEEECCC
Confidence 456666 467543 47899999999999 44445567899999999999999997766 5678999999999999
Q ss_pred CCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCcc
Q 038163 82 SPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL 161 (207)
Q Consensus 82 ~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~ 161 (207)
|.++ .++.. .+..+++|++|+++ +|.++...+..+. .+++|+.|++++|.+
T Consensus 86 N~l~--------------------~~~~~------~~~~l~~L~~L~l~--~N~l~~~~~~~~~-~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQ--------------------SLPNG------VFDKLTQLKELALD--TNQLKSVPDGIFD-RLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCC--------------------CCCTT------TTTTCTTCCEEECC--SSCCSCCCTTTTT-TCTTCCEEECCSSCB
T ss_pred CCcc--------------------ccCHH------HhhCCcccCEEECc--CCcceEeCHHHhc-CCcccCEEEecCCCe
Confidence 9987 12221 56778889999999 9988854444455 788999999999988
Q ss_pred Cccccc
Q 038163 162 GINSSE 167 (207)
Q Consensus 162 ~~~~~i 167 (207)
. +..
T Consensus 137 ~--~~~ 140 (177)
T 2o6r_A 137 D--CSC 140 (177)
T ss_dssp C--CCH
T ss_pred e--ccC
Confidence 7 544
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=2.4e-14 Score=114.93 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=125.7
Q ss_pred CCccCceecCccccCCCCCcEEecCCCcccCCCcchh-hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccE-EEcC
Q 038163 3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEY-LKLD 80 (207)
Q Consensus 3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~-L~l~ 80 (207)
+++++ .||..+ .+++++|++++|.| ..+|. .|.++++|++|++++|.+.+.+|. ..+..++++++ +.+.
T Consensus 18 ~~~Lt-~iP~~l---~~~l~~L~Ls~N~i---~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~--~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 18 ESKVT-EIPSDL---PRNAIELRFVLTKL---RVIQKGAFSGFGDLEKIEISQNDVLEVIEA--DVFSNLPKLHEIRIEK 88 (350)
T ss_dssp STTCC-SCCTTC---CTTCSEEEEESCCC---SEECTTSSTTCTTCCEEEEECCTTCCEECT--TSBCSCTTCCEEEEEE
T ss_pred CCCCC-ccCcCc---CCCCCEEEccCCcC---CCcCHHHHcCCCCCCEEECcCCCCCCccCh--hHhhcchhhhhhhccc
Confidence 45666 677654 36789999999999 45664 688999999999999998766652 45677888765 5666
Q ss_pred CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceeccccccc-ccCchhHHHHHhcC-CCccE
Q 038163 81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRI-ALNTSFLQIISESM-SSLKY 153 (207)
Q Consensus 81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n-~~~~~~~~~l~~~~-~~L~~ 153 (207)
+|.+....+..+..+++| .+|.+....+. .+.....+..+++. .+ .+....+..+. .+ ..++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~-------~~~~~~~l~~l~l~--~~~~i~~l~~~~f~-~~~~~l~~ 158 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-------HKIHSLQKVLLDIQ--DNINIHTIERNSFV-GLSFESVI 158 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC-------TTCCBSSCEEEEEE--SCTTCCEECTTSST-TSBSSCEE
T ss_pred CCcccccCchhhhhccccccccccccccccCCch-------hhcccchhhhhhhc--cccccccccccchh-hcchhhhh
Confidence 788775445555555555 66666654333 45556677778876 53 45433333344 34 36889
Q ss_pred EEccCCccCcccccchhhhhcCCCCCceEEecC-CcCCCCcc-ccccCCCCCccCC
Q 038163 154 LSLSYYTLGINSSETLNQGLCSLVHLQELYIAS-NDLRGSLP-WCMANMTSLRILD 207 (207)
Q Consensus 154 L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~-n~l~~~~p-~~~~~l~~L~~l~ 207 (207)
|++++|.++ .+ +. ......+++.+++.+ |.+. .+| ..|..+++|++||
T Consensus 159 L~L~~N~i~---~i-~~-~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 159 LWLNKNGIQ---EI-HN-SAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILD 208 (350)
T ss_dssp EECCSSCCC---EE-CT-TSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEE
T ss_pred hcccccccc---CC-Ch-hhccccchhHHhhccCCccc-CCCHHHhccCcccchhh
Confidence 999999998 78 76 555567899999986 5555 555 6788899988765
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=6.6e-16 Score=131.44 Aligned_cols=170 Identities=18% Similarity=0.112 Sum_probs=121.7
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCc-------------CCcccccchhc---------------
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNN-------------FTETVTITTQE--------------- 67 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~--------------- 67 (207)
...++|+.|++++|.+ ..+|..++.+++|+.|++.+|. ..+..|..+..
T Consensus 346 ~~~~~L~~L~Ls~n~L---~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS---TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHH---HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhH---HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 5677888888888888 5788888888888888886653 23222211000
Q ss_pred ------------cc--CCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceec
Q 038163 68 ------------LH--NFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLD 128 (207)
Q Consensus 68 ------------l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~ 128 (207)
+. ....|++|++++|.+++ ++. ++.+++| ++|.++ .+|. .+..+++|+.|+
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-------~~~~l~~L~~L~ 492 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-------ALAALRCLEVLQ 492 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-------GGGGCTTCCEEE
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch-------hhhcCCCCCEEE
Confidence 00 01257788888888874 333 5555555 778777 5777 888899999999
Q ss_pred ccccccccCchhHHHHHhcCCCccEEEccCCccCcccccc-hhhhhcCCCCCceEEecCCcCCCCccc---cccCCCCCc
Q 038163 129 MEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSET-LNQGLCSLVHLQELYIASNDLRGSLPW---CMANMTSLR 204 (207)
Q Consensus 129 l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~-~~~~~~~~~~L~~L~l~~n~l~~~~p~---~~~~l~~L~ 204 (207)
++ +|.+++ +| .+. .+++|+.|++++|.++ .+. |. .+..+++|+.|++++|.+.+..|. .+..+++|+
T Consensus 493 Ls--~N~l~~-lp-~l~-~l~~L~~L~Ls~N~l~---~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 493 AS--DNALEN-VD-GVA-NLPRLQELLLCNNRLQ---QSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp CC--SSCCCC-CG-GGT-TCSSCCEEECCSSCCC---SSSTTG-GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CC--CCCCCC-Cc-ccC-CCCCCcEEECCCCCCC---CCCCcH-HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 99 999885 55 677 8899999999999998 441 34 788899999999999999875442 234578887
Q ss_pred cCC
Q 038163 205 ILD 207 (207)
Q Consensus 205 ~l~ 207 (207)
.||
T Consensus 564 ~L~ 566 (567)
T 1dce_A 564 SIL 566 (567)
T ss_dssp EEE
T ss_pred ccC
Confidence 764
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.46 E-value=1.2e-13 Score=118.54 Aligned_cols=69 Identities=19% Similarity=0.099 Sum_probs=57.9
Q ss_pred CCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccC
Q 038163 120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMAN 199 (207)
Q Consensus 120 ~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 199 (207)
.+++|+.|+++ +|.++ .+|. .+++|+.|++++|.++ .+ |. .+..+++|+.|++++|++.+..|..+..
T Consensus 239 ~l~~L~~L~Ls--~N~L~-~lp~----~~~~L~~L~Ls~N~L~---~l-p~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 239 LPSELKELMVS--GNRLT-SLPM----LPSGLLSLSVYRNQLT---RL-PE-SLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CCTTCCEEECC--SSCCS-CCCC----CCTTCCEEECCSSCCC---SC-CG-GGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCCcCcEEECC--CCCCC-cCCc----ccccCcEEeCCCCCCC---cC-CH-HHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 45789999999 99998 3443 4678999999999998 88 87 8999999999999999998877765554
Q ss_pred C
Q 038163 200 M 200 (207)
Q Consensus 200 l 200 (207)
+
T Consensus 307 L 307 (622)
T 3g06_A 307 I 307 (622)
T ss_dssp H
T ss_pred c
Confidence 3
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=9.5e-16 Score=113.50 Aligned_cols=147 Identities=18% Similarity=0.145 Sum_probs=112.1
Q ss_pred CCCCccCceecC-----ccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCcc
Q 038163 1 MSFNEINNLVVP-----QGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNME 75 (207)
Q Consensus 1 l~~n~~~~~~p~-----~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~ 75 (207)
++.+.+.|.+|+ ..+..+++|++|++++|.+ ..+| .+..+++|++|++++|.++. +| ..+..+++|+
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l---~~l~-~~~~l~~L~~L~l~~n~l~~-l~---~~~~~~~~L~ 96 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI---EKIS-SLSGMENLRILSLGRNLIKK-IE---NLDAVADTLE 96 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE---SCCC-CHHHHTTCCEEEEEEEEECS-CS---SHHHHHHHCS
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC---cccc-ccccCCCCCEEECCCCCccc-cc---chhhcCCcCC
Confidence 345667777664 2578999999999999999 3367 88899999999999999985 56 4566678999
Q ss_pred EEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhH-HHHHhcCCCccEE
Q 038163 76 YLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL-QIISESMSSLKYL 154 (207)
Q Consensus 76 ~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~-~~l~~~~~~L~~L 154 (207)
+|++++|.+.+ .+ .+..+++|++|+++ +|.++.... ..+. .+++|+.|
T Consensus 97 ~L~L~~N~l~~-l~---------------------------~~~~l~~L~~L~l~--~N~i~~~~~~~~l~-~l~~L~~L 145 (198)
T 1ds9_A 97 ELWISYNQIAS-LS---------------------------GIEKLVNLRVLYMS--NNKITNWGEIDKLA-ALDKLEDL 145 (198)
T ss_dssp EEEEEEEECCC-HH---------------------------HHHHHHHSSEEEES--EEECCCHHHHHHHT-TTTTCSEE
T ss_pred EEECcCCcCCc-CC---------------------------ccccCCCCCEEECC--CCcCCchhHHHHHh-cCCCCCEE
Confidence 99999999873 11 33455679999999 999885333 4677 88999999
Q ss_pred EccCCccCcccccchh---------hhhcCCCCCceEEecCCcCCC
Q 038163 155 SLSYYTLGINSSETLN---------QGLCSLVHLQELYIASNDLRG 191 (207)
Q Consensus 155 ~l~~n~~~~~~~i~~~---------~~~~~~~~L~~L~l~~n~l~~ 191 (207)
++++|.+. +.+ |. ..+..+++|+.|| ++.+..
T Consensus 146 ~l~~N~l~--~~~-~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 146 LLAGNPLY--NDY-KENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EECSCHHH--HHH-HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EecCCccc--ccc-ccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999887 333 32 1377789999887 666653
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.40 E-value=3.8e-14 Score=120.73 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=20.8
Q ss_pred ccccCCCCCcEEecCCCcccCCCc-chhhhcCCCCCCEEEcC
Q 038163 13 QGYNGLRKLKSLDLSGVGVRDGSK-LLQSIGSFSSLNSLYLS 53 (207)
Q Consensus 13 ~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~~~l~~L~~L~l~ 53 (207)
.++..+++|++|++++|.+ ... ++..+..+++|++|+++
T Consensus 287 ~~~~~~~~L~~L~Ls~~~l--~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 287 ILFPFAAQIRKLDLLYALL--ETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGGGGGCCEEEETTCCC--CHHHHHHHHTTCTTCCEEEEE
T ss_pred HHHhhcCCCcEEecCCCcC--CHHHHHHHHHhCcCCCEEecc
Confidence 3455666777777777765 222 22334445555555544
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=1.3e-12 Score=111.27 Aligned_cols=122 Identities=20% Similarity=0.200 Sum_probs=88.3
Q ss_pred CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163 21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK 100 (207)
Q Consensus 21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 100 (207)
|+.|++++|.+ ..+|. +..+++|+.|++++|.++ .+| ..+..+++|++|++++|.++
T Consensus 443 L~~L~Ls~n~l---~~lp~-~~~l~~L~~L~Ls~N~l~-~lp---~~~~~l~~L~~L~Ls~N~l~--------------- 499 (567)
T 1dce_A 443 VRVLHLAHKDL---TVLCH-LEQLLLVTHLDLSHNRLR-ALP---PALAALRCLEVLQASDNALE--------------- 499 (567)
T ss_dssp CSEEECTTSCC---SSCCC-GGGGTTCCEEECCSSCCC-CCC---GGGGGCTTCCEEECCSSCCC---------------
T ss_pred ceEEEecCCCC---CCCcC-ccccccCcEeecCccccc-ccc---hhhhcCCCCCEEECCCCCCC---------------
Confidence 66677777777 33554 677777777777777777 456 56667777777777777765
Q ss_pred CcccceeccccccccCCCCCCCccceecccccccccCchh-HHHHHhcCCCccEEEccCCccCcccccchh--hhhcCCC
Q 038163 101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYYTLGINSSETLN--QGLCSLV 177 (207)
Q Consensus 101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~--~~~~~~~ 177 (207)
+ +| .+..+++|+.|+++ +|.+++.. |..+. .+++|+.|++++|.++ +.. +. ..+..++
T Consensus 500 ----~-lp--------~l~~l~~L~~L~Ls--~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~--~~~-~~~~~l~~~lp 560 (567)
T 1dce_A 500 ----N-VD--------GVANLPRLQELLLC--NNRLQQSAAIQPLV-SCPRLVLLNLQGNSLC--QEE-GIQERLAEMLP 560 (567)
T ss_dssp ----C-CG--------GGTTCSSCCEEECC--SSCCCSSSTTGGGG-GCTTCCEEECTTSGGG--GSS-SCTTHHHHHCT
T ss_pred ----C-Cc--------ccCCCCCCcEEECC--CCCCCCCCCcHHHh-cCCCCCEEEecCCcCC--CCc-cHHHHHHHHCc
Confidence 2 33 56778899999999 99998765 88888 8999999999999998 332 21 1244478
Q ss_pred CCceEEe
Q 038163 178 HLQELYI 184 (207)
Q Consensus 178 ~L~~L~l 184 (207)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 8888864
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=1.6e-12 Score=103.34 Aligned_cols=177 Identities=12% Similarity=0.099 Sum_probs=127.1
Q ss_pred eecCccccC--------CCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163 9 LVVPQGYNG--------LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD 80 (207)
Q Consensus 9 ~~p~~~~~~--------l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~ 80 (207)
.+|+.+|.+ +++|++|+++. .+ ..-....|.++++|+.+++..|.+....+ ..+..+..+.+++..
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i--~~I~~~aF~~~~~L~~l~l~~n~i~~i~~---~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KI--KNIEDAAFKGCDNLKICQIRKKTAPNLLP---EALADSVTAIFIPLG 156 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TC--CEECTTTTTTCTTCCEEEBCCSSCCEECT---TSSCTTTCEEEECTT
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cc--cchhHHHhhcCcccceEEcCCCCccccch---hhhcCCCceEEecCc
Confidence 578888888 99999999998 77 33344578899999999999998876655 566666666666654
Q ss_pred CCCC-------C----------------------------------------------hHHHH----hhcccccc--cCC
Q 038163 81 DSPL-------H----------------------------------------------ISLLQ----SIASIFPL--LKN 101 (207)
Q Consensus 81 ~~~~-------~----------------------------------------------~~~~~----~l~~l~~L--~~n 101 (207)
.... . ..... ....++.+ ..|
T Consensus 157 ~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n 236 (329)
T 3sb4_A 157 SSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT 236 (329)
T ss_dssp CTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB
T ss_pred chhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC
Confidence 4110 0 00000 12233333 555
Q ss_pred cccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCcc-EEEccCCccCcccccchhhhhcCCCCCc
Q 038163 102 LSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLK-YLSLSYYTLGINSSETLNQGLCSLVHLQ 180 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~-~L~l~~n~~~~~~~i~~~~~~~~~~~L~ 180 (207)
.++. ++.. .|..|.+|+.+++. .| +.......+. .+.+|+ .+.+.. .+. .| +...|.+|++|+
T Consensus 237 ~i~~-I~~~------aF~~~~~L~~l~l~--~n-i~~I~~~aF~-~~~~L~~~l~l~~-~l~---~I-~~~aF~~c~~L~ 300 (329)
T 3sb4_A 237 NATT-IPDF------TFAQKKYLLKIKLP--HN-LKTIGQRVFS-NCGRLAGTLELPA-SVT---AI-EFGAFMGCDNLR 300 (329)
T ss_dssp CCCE-ECTT------TTTTCTTCCEEECC--TT-CCEECTTTTT-TCTTCCEEEEECT-TCC---EE-CTTTTTTCTTEE
T ss_pred Ccce-ecHh------hhhCCCCCCEEECC--cc-cceehHHHhh-CChhccEEEEEcc-cce---EE-chhhhhCCccCC
Confidence 5554 3332 88999999999998 77 5544456667 889999 999988 676 77 545899999999
Q ss_pred eEEecCCcCCCCccccccCCCCCccCC
Q 038163 181 ELYIASNDLRGSLPWCMANMTSLRILD 207 (207)
Q Consensus 181 ~L~l~~n~l~~~~p~~~~~l~~L~~l~ 207 (207)
.++++.|.+....+..|..+++|+.++
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCccchhhhcCCcchhhhc
Confidence 999999999876668999999998764
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=1.3e-11 Score=89.05 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=29.2
Q ss_pred CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163 19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
+++++|++++|.+ ....|..|..+++|++|++++|.++...+ ..+..+++|++|++++|.+.
T Consensus 30 ~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 30 TTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPA---GVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccCh---hhccCCCCCCEEECCCCccC
Confidence 4444555555555 23334444445555555555555544333 33344455555555555443
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=5.6e-12 Score=91.00 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=84.6
Q ss_pred CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccccccc
Q 038163 20 KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL 99 (207)
Q Consensus 20 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 99 (207)
..+++++++|.+ ..+|..+ .+.|++|++++|.+++..| ..+..+++|++|++++|.++
T Consensus 10 ~~~~l~~s~n~l---~~ip~~~--~~~l~~L~L~~N~i~~~~~---~~~~~l~~L~~L~Ls~N~l~-------------- 67 (170)
T 3g39_A 10 SGTTVDCSGKSL---ASVPTGI--PTTTQVLYLYDNQITKLEP---GVFDRLTQLTRLDLDNNQLT-------------- 67 (170)
T ss_dssp ETTEEECTTSCC---SSCCSCC--CTTCSEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCC--------------
T ss_pred CCCEEEeCCCCc---CccCccC--CCCCcEEEcCCCcCCccCh---hhhcCcccCCEEECCCCCcC--------------
Confidence 457899999999 5677655 3889999999999999878 78889999999999999987
Q ss_pred CCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccC
Q 038163 100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLG 162 (207)
Q Consensus 100 ~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~ 162 (207)
.++.. .+..+++|++|+++ +|.++...+..+. .+++|+.|++++|.+.
T Consensus 68 ------~l~~~------~f~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 68 ------VLPAG------VFDKLTQLTQLSLN--DNQLKSIPRGAFD-NLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ------CCCTT------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCBC
T ss_pred ------ccChh------hccCCCCCCEEECC--CCccCEeCHHHhc-CCCCCCEEEeCCCCCC
Confidence 22321 56778888888888 8888755555566 7888888888888776
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=1.4e-11 Score=89.23 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=27.7
Q ss_pred CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163 19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
+++++|++++|.+ ....|..|..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPT---GVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccCh---hHhCCcchhhEEECCCCccc
Confidence 4444444444444 23333444444444444444444444332 22344444444444444443
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=3.3e-13 Score=109.21 Aligned_cols=163 Identities=19% Similarity=0.183 Sum_probs=107.4
Q ss_pred CCCCcEEecCCCcccCCCcchhhh----cC-CCCCCEEEcCCCcCCcccccchhccc-CCCCccEEEcCCCCCChHHHHh
Q 038163 18 LRKLKSLDLSGVGVRDGSKLLQSI----GS-FSSLNSLYLSSNNFTETVTITTQELH-NFTNMEYLKLDDSPLHISLLQS 91 (207)
Q Consensus 18 l~~L~~L~ls~n~i~~~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~ 91 (207)
++.+++|++++|.+ .......+ .. .++|+.|++++|.++.... ..+. .+++|++|++++|.++......
T Consensus 71 ~~~L~~L~Ls~n~l--~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~---~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRM--TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL---RTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCC--CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHH---HHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCC--CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHH---HHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 35678888888888 33333332 22 2688888888888875433 2322 3457888888888887655444
Q ss_pred h--------cccccc--cCCcccce----eccccccccCCCCCCCccceecccccccccCchh----HHHHHhcCCCccE
Q 038163 92 I--------ASIFPL--LKNLSMIG----CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF----LQIISESMSSLKY 153 (207)
Q Consensus 92 l--------~~l~~L--~~n~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~----~~~l~~~~~~L~~ 153 (207)
+ ..++.| ++|.++.. ++. .+..+++|++|+++ +|.+++.. ...+. ..++|+.
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-------~L~~~~~L~~L~Ls--~N~l~~~g~~~L~~~L~-~~~~L~~ 215 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-------GLAGNTSVTHLSLL--HTGLGDEGLELLAAQLD-RNRQLQE 215 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-------HHHTCSSCCEEECT--TSSCHHHHHHHHHHHGG-GCSCCCE
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHH-------HHhcCCCcCEEeCC--CCCCCcHHHHHHHHHHh-cCCCcCe
Confidence 3 234444 66666542 222 44567889999999 99987654 34445 6778999
Q ss_pred EEccCCccCccc--ccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163 154 LSLSYYTLGINS--SETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197 (207)
Q Consensus 154 L~l~~n~~~~~~--~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 197 (207)
|++++|.++..+ .+ .. .+...++|+.|++++|.+.+.....+
T Consensus 216 L~Ls~N~i~~~g~~~l-~~-~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 216 LNVAYNGAGDTAALAL-AR-AAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp EECCSSCCCHHHHHHH-HH-HHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred EECCCCCCCHHHHHHH-HH-HHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 999999997211 12 22 45567889999999999875544444
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=9.2e-12 Score=90.21 Aligned_cols=105 Identities=15% Similarity=0.217 Sum_probs=84.5
Q ss_pred CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163 21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK 100 (207)
Q Consensus 21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 100 (207)
-+.++++++.+ ..+|..+. ++|++|++++|.+++..| ..+..+++|++|+|++|.++
T Consensus 14 ~~~l~~~~n~l---~~iP~~~~--~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~--------------- 70 (174)
T 2r9u_A 14 QTLVNCQNIRL---ASVPAGIP--TDKQRLWLNNNQITKLEP---GVFDHLVNLQQLYFNSNKLT--------------- 70 (174)
T ss_dssp SSEEECCSSCC---SSCCSCCC--TTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC---------------
T ss_pred CcEEEeCCCCC---CccCCCcC--CCCcEEEeCCCCccccCH---HHhcCCcCCCEEECCCCCCC---------------
Confidence 46899999999 66777654 899999999999998878 78889999999999999987
Q ss_pred CcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccC
Q 038163 101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLG 162 (207)
Q Consensus 101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~ 162 (207)
.+|.. .+..+++|++|+++ +|.++...+..+. .+++|+.|++++|.+.
T Consensus 71 -----~i~~~------~~~~l~~L~~L~L~--~N~l~~l~~~~~~-~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 71 -----AIPTG------VFDKLTQLTQLDLN--DNHLKSIPRGAFD-NLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -----CCCTT------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCSEEECCSSCBC
T ss_pred -----ccChh------HhCCcchhhEEECC--CCccceeCHHHhc-cccCCCEEEeCCCCcc
Confidence 23331 45778888888888 8888754444466 7888888888888876
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.23 E-value=1e-12 Score=111.90 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=39.1
Q ss_pred CCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc-cccc
Q 038163 120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP-WCMA 198 (207)
Q Consensus 120 ~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~ 198 (207)
.+++|+.|+++ + .+++..+..+...+++|+.|++++|.++ +.. .......+++|+.|++++|.+.+..+ ..+.
T Consensus 430 ~~~~L~~L~L~--~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~--~~~-~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 430 HCKDLRRLSLS--G-LLTDKVFEYIGTYAKKMEMLSVAFAGDS--DLG-MHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp HCTTCCEEECC--S-SCCHHHHHHHHHHCTTCCEEEEESCCSS--HHH-HHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred hCCCccEEeec--C-cccHHHHHHHHHhchhccEeeccCCCCc--HHH-HHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence 34556666665 4 4444444444412556666666666654 222 22012445666666666666543222 2233
Q ss_pred CCCCCccC
Q 038163 199 NMTSLRIL 206 (207)
Q Consensus 199 ~l~~L~~l 206 (207)
.+++|+.|
T Consensus 504 ~l~~L~~L 511 (594)
T 2p1m_B 504 KLETMRSL 511 (594)
T ss_dssp GGGGSSEE
T ss_pred hCCCCCEE
Confidence 34555443
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=3.5e-12 Score=108.57 Aligned_cols=174 Identities=17% Similarity=0.126 Sum_probs=102.2
Q ss_pred cCCCCCcEEecCCCcccCCCc--chhhhcCCCCCCEEEcCCCcCCc----ccccchhcccCCCCccEEEcCCCCCChHHH
Q 038163 16 NGLRKLKSLDLSGVGVRDGSK--LLQSIGSFSSLNSLYLSSNNFTE----TVTITTQELHNFTNMEYLKLDDSPLHISLL 89 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~--~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 89 (207)
..+++|++|++++|.+.+.+. ++..+..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+.+ .+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~---~~~~~~~~L~~L~L~~~~~~~-l~ 236 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE---TIARNCRSLVSVKVGDFEILE-LV 236 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH---HHHHHCTTCCEEECSSCBGGG-GH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH---HHHhhCCCCcEEeccCccHHH-HH
Confidence 356777777777777632111 44455667777777777777662 222 234466778888887776653 33
Q ss_pred Hhhcccccc-----cCC-cc-------------------------cceeccccccccCCCCCCCccceecccccccccCc
Q 038163 90 QSIASIFPL-----LKN-LS-------------------------MIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNT 138 (207)
Q Consensus 90 ~~l~~l~~L-----~~n-~~-------------------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~ 138 (207)
..+..+++| ... .. ...++. .+..+++|++|+++ +|.+++
T Consensus 237 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-------~~~~~~~L~~L~Ls--~~~l~~ 307 (592)
T 3ogk_B 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-------LFPFAAQIRKLDLL--YALLET 307 (592)
T ss_dssp HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-------GGGGGGGCCEEEET--TCCCCH
T ss_pred HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-------HHhhcCCCcEEecC--CCcCCH
Confidence 334333333 110 00 001111 34457788888888 888765
Q ss_pred hhH-HHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecC-----------CcCCCC-ccccccCCCCCcc
Q 038163 139 SFL-QIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAS-----------NDLRGS-LPWCMANMTSLRI 205 (207)
Q Consensus 139 ~~~-~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~p~~~~~l~~L~~ 205 (207)
... ..+. .+++|+.|+++ +.+. ++.+ +. ....+++|+.|++++ +.+++. ++.....+++|+.
T Consensus 308 ~~~~~~~~-~~~~L~~L~L~-~~~~-~~~l-~~-~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 308 EDHCTLIQ-KCPNLEVLETR-NVIG-DRGL-EV-LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp HHHHHHHT-TCTTCCEEEEE-GGGH-HHHH-HH-HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred HHHHHHHH-hCcCCCEEecc-CccC-HHHH-HH-HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 554 3355 78889999888 4443 0233 33 456788899999983 555543 2333456788876
Q ss_pred CC
Q 038163 206 LD 207 (207)
Q Consensus 206 l~ 207 (207)
|+
T Consensus 383 L~ 384 (592)
T 3ogk_B 383 MA 384 (592)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=1.1e-11 Score=98.58 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=104.2
Q ss_pred CCCCcEEecCCCccc--CCC---------------cch-hhhcC--------CCCCCEEEcCCCcCCcccccchhcccCC
Q 038163 18 LRKLKSLDLSGVGVR--DGS---------------KLL-QSIGS--------FSSLNSLYLSSNNFTETVTITTQELHNF 71 (207)
Q Consensus 18 l~~L~~L~ls~n~i~--~~~---------------~~~-~~~~~--------l~~L~~L~l~~n~~~~~~~~~~~~l~~l 71 (207)
+++|++|||++|.+. ... .+| ..|.+ +++|+.+++.. .++.... ..+..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~---~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED---AAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT---TTTTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhH---HHhhcC
Confidence 678999999999983 000 223 35667 99999999998 7877666 678899
Q ss_pred CCccEEEcCCCCCChHHHHhhcccccc---cCCc--c---cceeccccccccCCC-------------------------
Q 038163 72 TNMEYLKLDDSPLHISLLQSIASIFPL---LKNL--S---MIGCEVNGVIRGQDF------------------------- 118 (207)
Q Consensus 72 ~~L~~L~l~~~~~~~~~~~~l~~l~~L---~~n~--~---~~~~~~~~~~~~~~~------------------------- 118 (207)
++|+.+++++|.+.......+..+..+ ..+. . ...+....+.+...+
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 999999999998753333333333222 0000 0 000000000000000
Q ss_pred -------------------CCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCC
Q 038163 119 -------------------PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHL 179 (207)
Q Consensus 119 -------------------~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L 179 (207)
..+++|+.+++. .|.++......+. .|.+|+.+.+..| +. .| +..+|.++.+|
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~--~n~i~~I~~~aF~-~~~~L~~l~l~~n-i~---~I-~~~aF~~~~~L 275 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDIS--KTNATTIPDFTFA-QKKYLLKIKLPHN-LK---TI-GQRVFSNCGRL 275 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECT--TBCCCEECTTTTT-TCTTCCEEECCTT-CC---EE-CTTTTTTCTTC
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECC--CCCcceecHhhhh-CCCCCCEEECCcc-cc---ee-hHHHhhCChhc
Confidence 025667777777 6666643344555 6677777777766 54 55 44467777777
Q ss_pred c-eEEecCCcCCCCccccccCCCCCccC
Q 038163 180 Q-ELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 180 ~-~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
+ .+++.. .+....+..|..|++|+.+
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 7 777776 4443344667777777654
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.18 E-value=5.1e-12 Score=107.50 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=29.5
Q ss_pred CCCCCcEEecCCC-cccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcc-cCCCCccEEEcCCCC
Q 038163 17 GLRKLKSLDLSGV-GVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQEL-HNFTNMEYLKLDDSP 83 (207)
Q Consensus 17 ~l~~L~~L~ls~n-~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~l~~L~~L~l~~~~ 83 (207)
.+++|++|++++| .+. ...++..+..+++|++|++++|.+++..+.++..+ ..+++|++|++++|.
T Consensus 128 ~~~~L~~L~L~~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFS-TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HCTTCCEEEEESCEEEE-HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred hCCCCcEEeCCCcCCCC-HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 3455555555555 231 01133333455555556555555444322111111 144556666665554
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=2.1e-11 Score=98.67 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=93.7
Q ss_pred CCCcEEecCCCcccCCCcchh-hhcCCCCCCEEEcCCCcCCcccccchhcc-----cCCCCccEEEcCCCCCChHHHHh-
Q 038163 19 RKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNSLYLSSNNFTETVTITTQEL-----HNFTNMEYLKLDDSPLHISLLQS- 91 (207)
Q Consensus 19 ~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~- 91 (207)
++|++|++++|.+ ...... ....+++|+.|++++|.+++... ..+ ...+.|++|+|++|.++......
T Consensus 101 ~~L~~L~Ls~n~l--~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~---~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l 175 (372)
T 3un9_A 101 HALDEVNLASCQL--DPAGLRTLLPVFLRARKLGLQLNSLGPEAC---KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL 175 (372)
T ss_dssp SCEEEEECTTCCC--CHHHHHHTHHHHHTEEEEECCSSCCCHHHH---HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH
T ss_pred CCceEEEecCCCC--CHHHHHHHHHHHHhccHhhcCCCCCCHHHH---HHHHHHHHhcCCccceeeCCCCCCChHHHHHH
Confidence 7899999999999 333333 33446789999999999986544 333 35678999999999997644332
Q ss_pred ---hc---ccccc--cCCcccce----eccccccccCCCCCCCccceecccccccccCchhH----HHHHhcCCCccEEE
Q 038163 92 ---IA---SIFPL--LKNLSMIG----CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL----QIISESMSSLKYLS 155 (207)
Q Consensus 92 ---l~---~l~~L--~~n~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~----~~l~~~~~~L~~L~ 155 (207)
+. .++.| ++|.+... ++. .+..+++|+.|+++ +|.+++... ..+. ..+.|+.|+
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-------~L~~~~~L~~L~Ls--~N~i~~~g~~~l~~~L~-~~~~L~~L~ 245 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAA-------QLDRNRQLQELNVA--YNGAGDTAALALARAAR-EHPSLELLH 245 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHH-------HGGGCSCCCEEECC--SSCCCHHHHHHHHHHHH-HCSSCCEEE
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-------HHhcCCCcCeEECC--CCCCCHHHHHHHHHHHH-hCCCCCEEe
Confidence 23 34444 77777642 233 56677899999999 999986543 4455 678999999
Q ss_pred ccCCccC
Q 038163 156 LSYYTLG 162 (207)
Q Consensus 156 l~~n~~~ 162 (207)
+++|.++
T Consensus 246 Ls~N~i~ 252 (372)
T 3un9_A 246 LYFNELS 252 (372)
T ss_dssp CTTSSCC
T ss_pred ccCCCCC
Confidence 9999998
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=3.9e-10 Score=90.01 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=72.4
Q ss_pred ccCceecCccccCCCCCcEEecCC-CcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCC
Q 038163 5 EINNLVVPQGYNGLRKLKSLDLSG-VGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSP 83 (207)
Q Consensus 5 ~~~~~~p~~~~~~l~~L~~L~ls~-n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 83 (207)
.+. .+|. +..+.+|++|+|++ |.+ ....+..|..+++|+.|+|++|.+++..| ..+..+++|++|+|++|.
T Consensus 20 ~l~-~ip~--l~~~~~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 20 ALD-SLHH--LPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAP---DAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CCT-TTTT--SCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECT---TGGGSCSCCCEEECCSSC
T ss_pred CCC-ccCC--CCCCCCeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCH---HHhcCCcCCCEEeCCCCc
Confidence 666 4775 78888899999985 888 44445678888999999999998888777 677888889999999888
Q ss_pred CChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccC
Q 038163 84 LHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN 137 (207)
Q Consensus 84 ~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~ 137 (207)
+. .+|.. .+..+. |+.|++. +|.+.
T Consensus 92 l~--------------------~~~~~------~~~~~~-L~~l~l~--~N~~~ 116 (347)
T 2ifg_A 92 LE--------------------SLSWK------TVQGLS-LQELVLS--GNPLH 116 (347)
T ss_dssp CS--------------------CCCST------TTCSCC-CCEEECC--SSCCC
T ss_pred cc--------------------eeCHH------HcccCC-ceEEEee--CCCcc
Confidence 86 23331 333333 8888888 88776
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=2.5e-10 Score=91.07 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=85.6
Q ss_pred cEEecCCC-cccCCCcchhhhcCCCCCCEEEcCC-CcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccccccc
Q 038163 22 KSLDLSGV-GVRDGSKLLQSIGSFSSLNSLYLSS-NNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL 99 (207)
Q Consensus 22 ~~L~ls~n-~i~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 99 (207)
..++.+++ .+ ..+|. +..+++|+.|+|++ |.++...+ ..+..+++|++|+|++|.+++
T Consensus 11 ~~v~~~~~n~l---~~ip~-l~~~~~L~~L~l~~~n~l~~~~~---~~~~~l~~L~~L~l~~N~l~~------------- 70 (347)
T 2ifg_A 11 SGLRCTRDGAL---DSLHH-LPGAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVKSGLRF------------- 70 (347)
T ss_dssp SCEECCSSCCC---TTTTT-SCSCSCCSEEECCSCSSCCEECG---GGSCSCCCCSEEECCSSCCCE-------------
T ss_pred CEEEcCCCCCC---CccCC-CCCCCCeeEEEccCCCCCCCcCh---hHhccccCCCEEECCCCccce-------------
Confidence 46789988 88 56888 99999999999996 99998877 788999999999999999872
Q ss_pred CCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccC
Q 038163 100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLG 162 (207)
Q Consensus 100 ~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~ 162 (207)
..+. .|..+++|+.|+|+ +|.++...+..+. .+ .|+.|++.+|.+.
T Consensus 71 ------~~~~-------~~~~l~~L~~L~l~--~N~l~~~~~~~~~-~~-~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 71 ------VAPD-------AFHFTPRLSRLNLS--FNALESLSWKTVQ-GL-SLQELVLSGNPLH 116 (347)
T ss_dssp ------ECTT-------GGGSCSCCCEEECC--SSCCSCCCSTTTC-SC-CCCEEECCSSCCC
T ss_pred ------eCHH-------HhcCCcCCCEEeCC--CCccceeCHHHcc-cC-CceEEEeeCCCcc
Confidence 2333 67889999999999 9999854444444 44 4999999999887
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=2.6e-09 Score=87.15 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=35.5
Q ss_pred eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163 9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS 82 (207)
Q Consensus 9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~ 82 (207)
.++..+|.++.+|+.++++.|.+ ..++.....+..|+.+.+..+ +..... ..+..+.+|+.+++..+
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n~l---~~I~~~aF~~~~L~~l~lp~~-l~~I~~---~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKTKI---TKLPASTFVYAGIEEVLLPVT-LKEIGS---QAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTSCC---SEECTTTTTTCCCSEEECCTT-CCEECT---TTTTTCTTCCCEECCTT
T ss_pred EehHHHhhCcccCCeeecCCCcc---eEechhhEeecccCEEEeCCc-hheehh---hHhhCCCCCCEEecCCC
Confidence 34555566666666666666655 333333223455666665532 343333 45556666666666543
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.89 E-value=4.1e-09 Score=76.93 Aligned_cols=127 Identities=17% Similarity=0.092 Sum_probs=71.5
Q ss_pred chhhhcCCCCCCEEEcCCC-cCCcccccc-hhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccc
Q 038163 37 LLQSIGSFSSLNSLYLSSN-NFTETVTIT-TQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIR 114 (207)
Q Consensus 37 ~~~~~~~l~~L~~L~l~~n-~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~ 114 (207)
+...+...+.|++|++++| .+....... ...+...+.|++|+|++|.+.......+. .
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~---------------~----- 87 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA---------------E----- 87 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---------------H-----
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH---------------H-----
Confidence 3445556677777777777 666432100 03445566777777777777655443322 1
Q ss_pred cCCCCCCCccceecccccccccCchhHH----HHHhcCCCccEEEc--cCCccCcccc--cchhhhhcCCCCCceEEecC
Q 038163 115 GQDFPHSKSLEHLDMEFMRIALNTSFLQ----IISESMSSLKYLSL--SYYTLGINSS--ETLNQGLCSLVHLQELYIAS 186 (207)
Q Consensus 115 ~~~~~~~~~L~~L~l~~~~n~~~~~~~~----~l~~~~~~L~~L~l--~~n~~~~~~~--i~~~~~~~~~~~L~~L~l~~ 186 (207)
.+...+.|++|+++ +|.+++.... .+. ..+.|++|++ ++|.+...+. + .. .+...++|+.|++++
T Consensus 88 --~L~~n~~L~~L~L~--~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l-~~-~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 88 --MLKVNNTLKSLNVE--SNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEI-AN-MLEKNTTLLKFGYHF 160 (185)
T ss_dssp --HHHHCSSCCEEECC--SSCCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHH-HH-HHHHCSSCCEEECCC
T ss_pred --HHHhCCCcCEEECc--CCcCCHHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHH-HH-HHHhCCCcCEEeccC
Confidence 23334557777777 7777654432 233 4456777777 6677762111 2 22 444556777777777
Q ss_pred CcCC
Q 038163 187 NDLR 190 (207)
Q Consensus 187 n~l~ 190 (207)
|.+.
T Consensus 161 n~i~ 164 (185)
T 1io0_A 161 TQQG 164 (185)
T ss_dssp SSHH
T ss_pred CCCC
Confidence 7664
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=5.7e-09 Score=76.15 Aligned_cols=124 Identities=10% Similarity=0.170 Sum_probs=93.0
Q ss_pred cccCCCCCcEEecCCC-cccCC--CcchhhhcCCCCCCEEEcCCCcCCcccccc-hhcccCCCCccEEEcCCCCCChHHH
Q 038163 14 GYNGLRKLKSLDLSGV-GVRDG--SKLLQSIGSFSSLNSLYLSSNNFTETVTIT-TQELHNFTNMEYLKLDDSPLHISLL 89 (207)
Q Consensus 14 ~~~~l~~L~~L~ls~n-~i~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~ 89 (207)
++...+.|++|++++| .+.+. ..+...+...++|++|++++|.+.+..... ...+...+.|++|+|++|.+.....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4577899999999999 88221 124556677899999999999998643210 0345566889999999999997765
Q ss_pred HhhcccccccCCcccceeccccccccCCCCCCCccceecc--cccccccCchhH----HHHHhcCCCccEEEccCCccC
Q 038163 90 QSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDM--EFMRIALNTSFL----QIISESMSSLKYLSLSYYTLG 162 (207)
Q Consensus 90 ~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~n~~~~~~~----~~l~~~~~~L~~L~l~~n~~~ 162 (207)
..+. . .+...+.|++|++ + +|.++.... ..+. ..+.|++|++++|.+.
T Consensus 111 ~~l~---------------~-------~L~~n~~L~~L~L~~~--~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALV---------------E-------ALQSNTSLIELRIDNQ--SQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHH---------------H-------GGGGCSSCCEEECCCC--SSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHH
T ss_pred HHHH---------------H-------HHHhCCCceEEEecCC--CCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCC
Confidence 4332 2 5566778999999 8 899986543 4455 6689999999999987
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=3.5e-08 Score=79.41 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=105.8
Q ss_pred ccCCCCCcEEecCCCcc-------cCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChH
Q 038163 15 YNGLRKLKSLDLSGVGV-------RDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHIS 87 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n~i-------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 87 (207)
...+++|+.|.+..... .+...+...+..+|+|+.|+++++.-. ..+ .+ .+++|++|++..+.+...
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~----~~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIG----KK-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCC----SC-BCTTCSEEEEECSBCCHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eec----cc-cCCCCcEEEEecCCCChH
Confidence 35678899998865432 111235566778899999999887311 233 23 378999999999998876
Q ss_pred HHHhhc--ccccc-----c--CCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHh--cCCCccEEEc
Q 038163 88 LLQSIA--SIFPL-----L--KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISE--SMSSLKYLSL 156 (207)
Q Consensus 88 ~~~~l~--~l~~L-----~--~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~--~~~~L~~L~l 156 (207)
....+. .+++| . .+...+.....+....-....+++|++|++. +|.+.+..+..+.+ .++.|+.|++
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~--~~~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV--DAEEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE--SCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC--CCCCchHHHHHHHhCccCCCCCEEEC
Confidence 655554 45555 1 1111111000000000011357899999999 99887665555541 3668999999
Q ss_pred cCCccCccc--ccchhhhhcCCCCCceEEecCCcCCCC
Q 038163 157 SYYTLGINS--SETLNQGLCSLVHLQELYIASNDLRGS 192 (207)
Q Consensus 157 ~~n~~~~~~--~i~~~~~~~~~~~L~~L~l~~n~l~~~ 192 (207)
+.|.+...+ .+ +. .+..+++|+.|+++.|.+++.
T Consensus 287 s~n~L~d~G~~~L-~~-~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 287 SAGVLTDEGARLL-LD-HVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp CSSCCBHHHHHHH-HT-THHHHTTCSEEECCSBBCCHH
T ss_pred CCCCCChHHHHHH-Hh-hcccCCcceEEECCCCcCCHH
Confidence 999998211 12 22 345679999999999988754
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=1.2e-07 Score=77.43 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=36.3
Q ss_pred eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163 9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
.|+..+|.+. +|+.+++..+ + ..-....|.+ .+|+.+.+.. .+..... ..+..+.+|+.++++.|.+.
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~-i--~~I~~~aF~~-~~L~~i~lp~-~l~~I~~---~aF~~c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEG-L--KSIGDMAFFN-STVQEIVFPS-TLEQLKE---DIFYYCYNLKKADLSKTKIT 193 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTT-C--CEECTTTTTT-CCCCEEECCT-TCCEECS---STTTTCTTCCEEECTTSCCS
T ss_pred EehHhhcccC-CccEEEeCCC-c--cEECHHhcCC-CCceEEEeCC-CccEehH---HHhhCcccCCeeecCCCcce
Confidence 4555666654 5777776654 4 1222224444 3566666654 3444333 45556666666666665544
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.53 E-value=1.6e-07 Score=67.69 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=54.2
Q ss_pred CCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCC-CChHHHHhhcccccccCCcccceeccccccccCCCCCCCc
Q 038163 45 SSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSP-LHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKS 123 (207)
Q Consensus 45 ~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~ 123 (207)
..|+.||++++.+++..- ..+..+++|++|+|++|. +++.....+..+. ..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~----------------------~~~~~ 115 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE----------------------NLQKS 115 (176)
T ss_dssp CCEEEEEEESCCCCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH----------------------HHHHH
T ss_pred ceEeEEeCcCCCccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc----------------------cccCC
Confidence 357777777777665443 556677777777777774 6655444332100 01235
Q ss_pred cceeccccccc-ccCchhHHHHHhcCCCccEEEccCCc
Q 038163 124 LEHLDMEFMRI-ALNTSFLQIISESMSSLKYLSLSYYT 160 (207)
Q Consensus 124 L~~L~l~~~~n-~~~~~~~~~l~~~~~~L~~L~l~~n~ 160 (207)
|++|+++ +| .+++.....+. .+++|++|++++|.
T Consensus 116 L~~L~Ls--~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 116 MLEMEII--SCGNVTDKGIIALH-HFRNLKYLFLSDLP 150 (176)
T ss_dssp CCEEEEE--SCTTCCHHHHHHGG-GCTTCCEEEEESCT
T ss_pred CCEEEcC--CCCcCCHHHHHHHh-cCCCCCEEECCCCC
Confidence 7777777 66 47766666666 67777777777765
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=1.8e-07 Score=67.42 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCCCccceeccccccc-ccCchhHHHHHhcC----CCccEEEccCCc-cCcccccchhhhhcCCCCCceEEecCCc
Q 038163 119 PHSKSLEHLDMEFMRI-ALNTSFLQIISESM----SSLKYLSLSYYT-LGINSSETLNQGLCSLVHLQELYIASND 188 (207)
Q Consensus 119 ~~~~~L~~L~l~~~~n-~~~~~~~~~l~~~~----~~L~~L~l~~n~-~~~~~~i~~~~~~~~~~~L~~L~l~~n~ 188 (207)
.++++|++|+++ +| .+++.....+. .+ ++|++|++++|. ++ +.- -. .+..+++|+.|++++|.
T Consensus 82 ~~~~~L~~L~L~--~C~~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~IT--D~G-l~-~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 82 EGLQYVEKIRLC--KCHYIEDGCLERLS-QLENLQKSMLEMEIISCGNVT--DKG-II-ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TTCSCCCEEEEE--SCTTCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCC--HHH-HH-HGGGCTTCCEEEEESCT
T ss_pred cCCCCCCEEEeC--CCCccCHHHHHHHH-hcccccCCCCEEEcCCCCcCC--HHH-HH-HHhcCCCCCEEECCCCC
Confidence 345555555565 55 25554444444 32 245566665553 44 111 11 34455556666665554
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=6.9e-07 Score=68.73 Aligned_cols=80 Identities=26% Similarity=0.309 Sum_probs=62.8
Q ss_pred CCCccceecccccccccCc--hhHHHHHhcCCCccEEEccCCccCcccccchh-hhhcCCCCCceEEecCCcCCCCcc--
Q 038163 120 HSKSLEHLDMEFMRIALNT--SFLQIISESMSSLKYLSLSYYTLGINSSETLN-QGLCSLVHLQELYIASNDLRGSLP-- 194 (207)
Q Consensus 120 ~~~~L~~L~l~~~~n~~~~--~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~-~~~~~~~~L~~L~l~~n~l~~~~p-- 194 (207)
.++.|+.|+|+ +|.+++ .++..+. .+++|+.|+|++|.++ .+ .. ..+..+ +|++|++++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls--~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~---~~-~~l~~l~~l-~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 168 NIPELLSLNLS--NNRLYRLDDMSSIVQ-KAPNLKILNLSGNELK---SE-RELDKIKGL-KLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HCTTCCEEECT--TSCCCCCGGGTTHHH-HSTTCCEEECTTSCCC---SG-GGGGGGTTS-CCSEEECTTSTTGGGCSSH
T ss_pred hCCCCCEEECC--CCCCCCCccchhHHh-hCCCCCEEECCCCccC---Cc-hhhhhcccC-CcceEEccCCcCccccCcc
Confidence 46789999999 999986 4456677 8999999999999998 33 11 134444 89999999999987555
Q ss_pred -----ccccCCCCCccCC
Q 038163 195 -----WCMANMTSLRILD 207 (207)
Q Consensus 195 -----~~~~~l~~L~~l~ 207 (207)
..+..+++|+.||
T Consensus 240 ~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHCTTCCEES
T ss_pred hhHHHHHHHHCcccCeEC
Confidence 3467889998876
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=3.7e-06 Score=67.58 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=92.1
Q ss_pred ccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhccc--CCCCccEEEcCCC--C-CCh-
Q 038163 13 QGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELH--NFTNMEYLKLDDS--P-LHI- 86 (207)
Q Consensus 13 ~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~l~~L~~L~l~~~--~-~~~- 86 (207)
.++..+++|++|+++++.- ..++. + .+++|+.|++..+.++.... ..+. .+++|++|+|+.+ . ...
T Consensus 166 ~ll~~~P~L~~L~L~g~~~---l~l~~-~-~~~~L~~L~L~~~~l~~~~l---~~l~~~~lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNN---LSIGK-K-PRPNLKSLEIISGGLPDSVV---EDILGSDLPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp HHHHTCTTCCEEEEECCBT---CBCCS-C-BCTTCSEEEEECSBCCHHHH---HHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred HHHhcCCCCcEEEEeCCCC---ceecc-c-cCCCCcEEEEecCCCChHHH---HHHHHccCCCCcEEEEeccccccccch
Confidence 3456778899999987732 22333 3 37888888888887765433 3333 6788888887531 1 110
Q ss_pred ---HHHHh-----hcccccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHH---hcCCCccE
Q 038163 87 ---SLLQS-----IASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIIS---ESMSSLKY 153 (207)
Q Consensus 87 ---~~~~~-----l~~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~---~~~~~L~~ 153 (207)
.+... +.+|+.| ..|.+....+.. +.....+++|++|+++ .|.+++..+..+. ..+++|+.
T Consensus 238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~----la~a~~~~~L~~LdLs--~n~L~d~G~~~L~~~L~~l~~L~~ 311 (362)
T 2ra8_A 238 DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM----FLESDILPQLETMDIS--AGVLTDEGARLLLDHVDKIKHLKF 311 (362)
T ss_dssp CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH----HHHCSSGGGCSEEECC--SSCCBHHHHHHHHTTHHHHTTCSE
T ss_pred hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH----HHhCccCCCCCEEECC--CCCCChHHHHHHHhhcccCCcceE
Confidence 01111 1233333 445544321110 0012357899999999 9999876554443 15689999
Q ss_pred EEccCCccCcccccchhhhhcC-CCCCceEEecCCc
Q 038163 154 LSLSYYTLGINSSETLNQGLCS-LVHLQELYIASND 188 (207)
Q Consensus 154 L~l~~n~~~~~~~i~~~~~~~~-~~~L~~L~l~~n~ 188 (207)
|++++|.++ +.. .. .+.. + -..++++.++
T Consensus 312 L~L~~n~i~--d~~-~~-~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 312 INMKYNYLS--DEM-KK-ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp EECCSBBCC--HHH-HH-HHHHHC--CSEEECCSBC
T ss_pred EECCCCcCC--HHH-HH-HHHHHc--CCEEEecCCc
Confidence 999999987 332 22 3332 2 3568888887
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=2.2e-06 Score=65.88 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=49.3
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCCh
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHI 86 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 86 (207)
..+++|++|+|++|.+++...++..+..+++|+.|+|++|.+++... +..+..+ +|++|++++|.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG--GGGGTTS-CCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh--hhhcccC-CcceEEccCCcCcc
Confidence 45778888888888884333566777788888888888888886521 1334444 88888888888864
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.84 E-value=2.7e-05 Score=57.02 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=79.4
Q ss_pred chhhhcCCCCCCEEEcCCC-cCCccccc-chhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccc
Q 038163 37 LLQSIGSFSSLNSLYLSSN-NFTETVTI-TTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIR 114 (207)
Q Consensus 37 ~~~~~~~l~~L~~L~l~~n-~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~ 114 (207)
+...+..-+.|+.|+|+++ .+...... -...+..-..|++|+|++|.+.+.....+. .
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA---------------~----- 92 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI---------------E----- 92 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH---------------H-----
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH---------------H-----
Confidence 3344455678888888875 66643210 014555667888888888888866554332 1
Q ss_pred cCCCCCCCccceecccccccccCchhHHHHHhcC---CCccEEEccCC---ccCccc--ccchhhhhcCCCCCceEEecC
Q 038163 115 GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESM---SSLKYLSLSYY---TLGINS--SETLNQGLCSLVHLQELYIAS 186 (207)
Q Consensus 115 ~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~---~~L~~L~l~~n---~~~~~~--~i~~~~~~~~~~~L~~L~l~~ 186 (207)
.+..-..|+.|+|+ +|.+++.....+.+.+ +.|++|++++| .+...+ .+ .. .+..-+.|+.|+++.
T Consensus 93 --aL~~N~tL~~L~L~--~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i-a~-aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 93 --LIETSPSLRVLNVE--SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM-MM-AIEENESLLRVGISF 166 (197)
T ss_dssp --HHHHCSSCCEEECC--SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH-HH-HHHHCSSCCEEECCC
T ss_pred --HHhcCCccCeEecC--CCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH-HH-HHHhCCCcCeEeccC
Confidence 33344678888888 8888866655444233 46888888765 344111 13 33 566677888888877
Q ss_pred CcCC
Q 038163 187 NDLR 190 (207)
Q Consensus 187 n~l~ 190 (207)
|.+.
T Consensus 167 ~~~g 170 (197)
T 1pgv_A 167 ASME 170 (197)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 6543
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.84 E-value=8.7e-05 Score=60.01 Aligned_cols=166 Identities=10% Similarity=0.066 Sum_probs=97.3
Q ss_pred cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163 16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI 95 (207)
Q Consensus 16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 95 (207)
.....++.+.+..... ......+..+..++.+.+..+... ... ..+..+..++.+......+....-.....+
T Consensus 227 ~~~~~l~~i~ip~~~~---~i~~~~f~~~~~l~~~~~~~~~~~-i~~---~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L 299 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSFT---ELGKSVFYGCTDLESISIQNNKLR-IGG---SLFYNCSGLKKVIYGSVIVPEKTFYGCSSL 299 (394)
T ss_dssp TTTCCCCEEEECTTCC---EECSSTTTTCSSCCEEEECCTTCE-ECS---CTTTTCTTCCEEEECSSEECTTTTTTCTTC
T ss_pred cccCCCceEEECCCce---ecccccccccccceeEEcCCCcce-eec---cccccccccceeccCceeeccccccccccc
Confidence 3345666666654322 222335566777777777655322 222 345556666666555443322111111222
Q ss_pred ccc-cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhc
Q 038163 96 FPL-LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLC 174 (207)
Q Consensus 96 ~~L-~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~ 174 (207)
..+ -.+.+. .++.. .|..|.+|+.+++. .+ ++.....++. .|.+|+.+.+..+ +. .| ...+|.
T Consensus 300 ~~i~l~~~i~-~I~~~------aF~~c~~L~~i~lp--~~-v~~I~~~aF~-~c~~L~~i~lp~~-l~---~I-~~~aF~ 363 (394)
T 4fs7_A 300 TEVKLLDSVK-FIGEE------AFESCTSLVSIDLP--YL-VEEIGKRSFR-GCTSLSNINFPLS-LR---KI-GANAFQ 363 (394)
T ss_dssp CEEEECTTCC-EECTT------TTTTCTTCCEECCC--TT-CCEECTTTTT-TCTTCCEECCCTT-CC---EE-CTTTBT
T ss_pred cccccccccc-eechh------hhcCCCCCCEEEeC--Cc-ccEEhHHhcc-CCCCCCEEEECcc-cc---Ee-hHHHhh
Confidence 222 111121 12222 78889999999986 54 4433345666 8899999999766 65 66 555899
Q ss_pred CCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 175 SLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 175 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
+|.+|+.+++..+-- .+...|.++++|+.+
T Consensus 364 ~C~~L~~i~lp~~~~--~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 364 GCINLKKVELPKRLE--QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEEEEEGGGG--GGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEECCCCE--EhhheecCCCCCcEE
Confidence 999999999986642 345778899988754
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.74 E-value=9.5e-05 Score=54.09 Aligned_cols=123 Identities=12% Similarity=0.214 Sum_probs=87.3
Q ss_pred ccCCCCCcEEecCCC-cccCC--CcchhhhcCCCCCCEEEcCCCcCCcccccc-hhcccCCCCccEEEcCCCCCChHHHH
Q 038163 15 YNGLRKLKSLDLSGV-GVRDG--SKLLQSIGSFSSLNSLYLSSNNFTETVTIT-TQELHNFTNMEYLKLDDSPLHISLLQ 90 (207)
Q Consensus 15 ~~~l~~L~~L~ls~n-~i~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~ 90 (207)
+..-+.|++|+++++ .|.+. ..+-+.+..-+.|+.|+|++|.+.+..... ...+..-+.|++|+|++|.+......
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 355678999999986 88211 125566677889999999999998654311 03444668899999999999977665
Q ss_pred hhcccccccCCcccceeccccccccCCCCCCCccceeccccccc---ccCch----hHHHHHhcCCCccEEEccCCccC
Q 038163 91 SIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRI---ALNTS----FLQIISESMSSLKYLSLSYYTLG 162 (207)
Q Consensus 91 ~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n---~~~~~----~~~~l~~~~~~L~~L~l~~n~~~ 162 (207)
.+. . .+..-..|+.|+++ ++ .+... +.+.+. .-+.|+.|+++.+.+.
T Consensus 117 ala---------------~-------aL~~N~tL~~L~L~--n~~~~~ig~~g~~~ia~aL~-~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLL---------------R-------STLVTQSIVEFKAD--NQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFASME 170 (197)
T ss_dssp HHH---------------H-------HTTTTCCCSEEECC--CCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCCHH
T ss_pred HHH---------------H-------HHhhCCceeEEECC--CCcCcCcCHHHHHHHHHHHH-hCCCcCeEeccCCCcc
Confidence 443 2 55566779999997 65 44543 345555 6678999999877664
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.66 E-value=0.00012 Score=59.23 Aligned_cols=178 Identities=13% Similarity=0.089 Sum_probs=99.0
Q ss_pred eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcc-------------cccc-----hhcccC
Q 038163 9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET-------------VTIT-----TQELHN 70 (207)
Q Consensus 9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------~~~~-----~~~l~~ 70 (207)
.++..+|.++.+|+.+++..+ + .......+.++..|+.+.+..+...-. +|.. ...+..
T Consensus 175 ~I~~~~F~~c~~L~~i~l~~~-~--~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~ 251 (394)
T 4fs7_A 175 TLHNGLFSGCGKLKSIKLPRN-L--KIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYG 251 (394)
T ss_dssp EECTTTTTTCTTCCBCCCCTT-C--CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTT
T ss_pred eeccccccCCCCceEEEcCCC-c--eEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccc
Confidence 467777888888988888765 3 122233556666666665544321100 0000 022334
Q ss_pred CCCccEEEcCCCCCChHHHHhhcccccccCCcc-cceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCC
Q 038163 71 FTNMEYLKLDDSPLHISLLQSIASIFPLLKNLS-MIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMS 149 (207)
Q Consensus 71 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~ 149 (207)
+..++.+.+..+... .....+..+..+..-.. ...++. ..+..+.+|+.+.+. .+ ++.....++. .|.
T Consensus 252 ~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~------~~F~~~~~L~~i~l~--~~-i~~I~~~aF~-~c~ 320 (394)
T 4fs7_A 252 CTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE------KTFYGCSSLTEVKLL--DS-VKFIGEEAFE-SCT 320 (394)
T ss_dssp CSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT------TTTTTCTTCCEEEEC--TT-CCEECTTTTT-TCT
T ss_pred cccceeEEcCCCcce-eeccccccccccceeccCceeecc------ccccccccccccccc--cc-cceechhhhc-CCC
Confidence 445555555443321 11111111111100000 001222 167778888888876 44 3323345566 789
Q ss_pred CccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163 150 SLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206 (207)
Q Consensus 150 ~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 206 (207)
+|+.+.+..+ +. .| ...+|.+|.+|+.+.+..+ +.......|..|++|+.+
T Consensus 321 ~L~~i~lp~~-v~---~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 321 SLVSIDLPYL-VE---EI-GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp TCCEECCCTT-CC---EE-CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred CCCEEEeCCc-cc---EE-hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence 9999999644 65 66 5558999999999999877 554445789999999865
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.65 E-value=0.00035 Score=55.99 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=48.6
Q ss_pred CCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163 117 DFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC 196 (207)
Q Consensus 117 ~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 196 (207)
.|..|.+|+.+.+. .+.++......+. .|.+|+.+.+..+ ++ .| ...+|.+|.+|+.+.+..+ +.......
T Consensus 281 aF~~c~~L~~i~l~--~~~i~~I~~~aF~-~c~~L~~i~lp~~-l~---~I-~~~aF~~C~~L~~i~ip~~-v~~I~~~a 351 (379)
T 4h09_A 281 LCSGCSNLTKVVMD--NSAIETLEPRVFM-DCVKLSSVTLPTA-LK---TI-QVYAFKNCKALSTISYPKS-ITLIESGA 351 (379)
T ss_dssp TTTTCTTCCEEEEC--CTTCCEECTTTTT-TCTTCCEEECCTT-CC---EE-CTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred cccccccccccccc--ccccceehhhhhc-CCCCCCEEEcCcc-cc---EE-HHHHhhCCCCCCEEEECCc-cCEEchhH
Confidence 67778888888877 6666533345556 7788888888543 54 55 4447778888888777554 32222345
Q ss_pred ccCCCC
Q 038163 197 MANMTS 202 (207)
Q Consensus 197 ~~~l~~ 202 (207)
|..++.
T Consensus 352 F~~c~~ 357 (379)
T 4h09_A 352 FEGSSI 357 (379)
T ss_dssp TTTSSC
T ss_pred hhCCCC
Confidence 555543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.47 E-value=0.00067 Score=54.74 Aligned_cols=125 Identities=10% Similarity=0.118 Sum_probs=71.0
Q ss_pred hhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCC
Q 038163 38 LQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD 117 (207)
Q Consensus 38 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~ 117 (207)
...|.++..|+.+.+..+.. .... ..+..+..|+.+.+... +. .++.. .
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~---~aF~~c~~L~~i~l~~~-i~--------------------~I~~~------a 306 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGT---GAFMNCPALQDIEFSSR-IT--------------------ELPES------V 306 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECT---TTTTTCTTCCEEECCTT-CC--------------------EECTT------T
T ss_pred cceeeecccccEEecccccc-eecC---cccccccccccccCCCc-cc--------------------ccCce------e
Confidence 34566777787777755432 2222 45667777777777532 22 12222 6
Q ss_pred CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163 118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197 (207)
Q Consensus 118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 197 (207)
|..|.+|+.+.+. .+ ++.....++. .|.+|+.+.+..+ ++ .| ...+|.+|.+|+.+++.++... ...+
T Consensus 307 F~~c~~L~~i~lp--~~-v~~I~~~aF~-~C~~L~~i~ip~s-v~---~I-~~~aF~~C~~L~~i~~~~~~~~---~~~~ 374 (394)
T 4gt6_A 307 FAGCISLKSIDIP--EG-ITQILDDAFA-GCEQLERIAIPSS-VT---KI-PESAFSNCTALNNIEYSGSRSQ---WNAI 374 (394)
T ss_dssp TTTCTTCCEEECC--TT-CCEECTTTTT-TCTTCCEEEECTT-CC---BC-CGGGGTTCTTCCEEEESSCHHH---HHTC
T ss_pred ecCCCCcCEEEeC--Cc-ccEehHhHhh-CCCCCCEEEECcc-cC---EE-hHhHhhCCCCCCEEEECCceee---hhhh
Confidence 6777777777775 43 3322234455 6777777777543 54 55 4447777778887777776543 1334
Q ss_pred cCCCCCcc
Q 038163 198 ANMTSLRI 205 (207)
Q Consensus 198 ~~l~~L~~ 205 (207)
..+.+|+.
T Consensus 375 ~~~~~L~~ 382 (394)
T 4gt6_A 375 STDSGLQN 382 (394)
T ss_dssp BCCCCC--
T ss_pred hccCCCCE
Confidence 44445443
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.32 E-value=0.0024 Score=51.09 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=60.9
Q ss_pred CCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163 117 DFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC 196 (207)
Q Consensus 117 ~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 196 (207)
.+..+..|+.+.+. .+ +.......+. .|.+|+.+.+..+.+. .| ....|.+|.+|+.+.+..+ +.......
T Consensus 258 aF~~~~~l~~i~l~--~~-i~~i~~~aF~-~c~~L~~i~l~~~~i~---~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~a 328 (379)
T 4h09_A 258 LLQNCTALKTLNFY--AK-VKTVPYLLCS-GCSNLTKVVMDNSAIE---TL-EPRVFMDCVKLSSVTLPTA-LKTIQVYA 328 (379)
T ss_dssp TTTTCTTCCEEEEC--CC-CSEECTTTTT-TCTTCCEEEECCTTCC---EE-CTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred ccceeehhcccccc--cc-ceeccccccc-cccccccccccccccc---ee-hhhhhcCCCCCCEEEcCcc-ccEEHHHH
Confidence 67788888888876 43 3322334556 8899999999988887 77 5558999999999999765 44333478
Q ss_pred ccCCCCCccC
Q 038163 197 MANMTSLRIL 206 (207)
Q Consensus 197 ~~~l~~L~~l 206 (207)
|..|++|+.+
T Consensus 329 F~~C~~L~~i 338 (379)
T 4h09_A 329 FKNCKALSTI 338 (379)
T ss_dssp TTTCTTCCCC
T ss_pred hhCCCCCCEE
Confidence 9999998875
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.09 E-value=0.0033 Score=50.69 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=37.5
Q ss_pred CCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163 117 DFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC 196 (207)
Q Consensus 117 ~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 196 (207)
.+..+..|+.+.+. .. ++......+. .|.+|+.+.+..+ ++ .| ...+|.+|.+|+.+.+-.+ +.......
T Consensus 283 aF~~c~~L~~i~l~--~~-i~~I~~~aF~-~c~~L~~i~lp~~-v~---~I-~~~aF~~C~~L~~i~ip~s-v~~I~~~a 352 (394)
T 4gt6_A 283 AFMNCPALQDIEFS--SR-ITELPESVFA-GCISLKSIDIPEG-IT---QI-LDDAFAGCEQLERIAIPSS-VTKIPESA 352 (394)
T ss_dssp TTTTCTTCCEEECC--TT-CCEECTTTTT-TCTTCCEEECCTT-CC---EE-CTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred ccccccccccccCC--Cc-ccccCceeec-CCCCcCEEEeCCc-cc---Ee-hHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence 45555555555553 21 2211123333 5556666665432 33 44 3335556666666666433 33222355
Q ss_pred ccCCCCCcc
Q 038163 197 MANMTSLRI 205 (207)
Q Consensus 197 ~~~l~~L~~ 205 (207)
|..|++|+.
T Consensus 353 F~~C~~L~~ 361 (394)
T 4gt6_A 353 FSNCTALNN 361 (394)
T ss_dssp GTTCTTCCE
T ss_pred hhCCCCCCE
Confidence 566665554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.90 E-value=0.0018 Score=43.96 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=44.3
Q ss_pred cEEecCCCcccCC-CcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163 22 KSLDLSGVGVRDG-SKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH 85 (207)
Q Consensus 22 ~~L~ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 85 (207)
.+++.+++.+ + ..+|..+. ++|++|+|++|.++...+ ..+..+++|++|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L--~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGL--TWASLPTAFP--VDTTELVLTGNNLTALPP---GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCC--CTTTSCSCCC--TTCSEEECTTSCCSSCCT---TTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCC--ccccCCCCCC--cCCCEEECCCCcCCccCh---hhhhhccccCEEEecCCCee
Confidence 4788888888 2 16665332 469999999999998766 67778889999999999875
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.17 E-value=0.01 Score=40.17 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=37.4
Q ss_pred CCCccC-ceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCC
Q 038163 2 SFNEIN-NLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFT 58 (207)
Q Consensus 2 ~~n~~~-~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~ 58 (207)
+++.++ ..+|... -.++++|+|++|.| ...-+..|..+++|+.|+|.+|.+.
T Consensus 16 s~~~L~~~~vP~~l---p~~l~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 16 GRRGLTWASLPTAF---PVDTTELVLTGNNL--TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CSSCCCTTTSCSCC---CTTCSEEECTTSCC--SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCCCccccCCCCC---CcCCCEEECCCCcC--CccChhhhhhccccCEEEecCCCee
Confidence 344554 2466432 24689999999999 4444557788999999999999765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.29 E-value=21 Score=22.37 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=29.4
Q ss_pred eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCC
Q 038163 9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSN 55 (207)
Q Consensus 9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n 55 (207)
.|-..+|.++..|+++.|..+-- .-....|.++.+|+.+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~v~---~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPNIG---LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTTSS---CCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCchh---eEcHHHHhccCCccEEEEcCC
Confidence 35567788888888888865432 233446777788887777554
Done!