Query 038165
Match_columns 731
No_of_seqs 515 out of 4798
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.8E-69 6.1E-74 609.7 35.0 686 1-708 1-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.3E-60 2.8E-65 570.1 23.7 624 1-693 215-906 (1153)
3 KOG0444 Cytoskeletal regulator 99.9 7.5E-26 1.6E-30 231.9 -5.2 329 315-675 34-380 (1255)
4 PLN00113 leucine-rich repeat r 99.9 5E-23 1.1E-27 247.4 17.7 333 333-691 116-463 (968)
5 PLN00113 leucine-rich repeat r 99.9 3.5E-22 7.7E-27 240.1 18.4 320 332-690 137-485 (968)
6 PLN03210 Resistant to P. syrin 99.9 8.2E-22 1.8E-26 236.8 21.4 312 335-676 589-912 (1153)
7 PF00931 NB-ARC: NB-ARC domain 99.9 1.2E-25 2.7E-30 230.9 -13.8 151 116-268 129-284 (287)
8 KOG4658 Apoptotic ATPase [Sign 99.9 5.8E-23 1.2E-27 233.7 0.6 322 316-677 526-867 (889)
9 KOG0444 Cytoskeletal regulator 99.8 7.4E-23 1.6E-27 210.2 -2.9 298 332-664 75-393 (1255)
10 KOG4194 Membrane glycoprotein 99.8 1.2E-21 2.7E-26 200.1 3.8 321 333-688 100-447 (873)
11 KOG4194 Membrane glycoprotein 99.8 3.3E-21 7.2E-26 197.0 3.2 315 335-690 78-426 (873)
12 KOG0472 Leucine-rich repeat pr 99.7 3.2E-20 7E-25 181.9 -5.2 312 329-669 200-540 (565)
13 KOG0472 Leucine-rich repeat pr 99.6 8.3E-19 1.8E-23 172.1 -9.6 259 360-668 48-308 (565)
14 PRK15387 E3 ubiquitin-protein 99.6 5.7E-15 1.2E-19 165.1 16.9 131 317-466 205-335 (788)
15 KOG0618 Serine/threonine phosp 99.6 1.6E-16 3.4E-21 171.9 -3.1 270 355-669 217-488 (1081)
16 PRK15387 E3 ubiquitin-protein 99.5 4.4E-14 9.5E-19 158.0 14.7 256 336-669 202-457 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 2.7E-14 5.9E-19 160.8 12.4 120 336-468 179-298 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 2.7E-14 5.9E-19 160.8 11.1 137 318-468 183-319 (754)
19 KOG0618 Serine/threonine phosp 99.5 1.1E-15 2.5E-20 165.3 -4.6 287 335-666 219-506 (1081)
20 KOG0617 Ras suppressor protein 99.4 3.9E-15 8.5E-20 129.6 -2.7 154 325-495 23-179 (264)
21 KOG0617 Ras suppressor protein 99.4 7.5E-15 1.6E-19 127.9 -6.3 111 350-463 26-137 (264)
22 KOG4237 Extracellular matrix p 99.3 6.9E-14 1.5E-18 137.8 -3.8 267 336-644 68-357 (498)
23 KOG4237 Extracellular matrix p 99.2 1.6E-13 3.4E-18 135.3 -5.5 272 357-666 67-355 (498)
24 cd00116 LRR_RI Leucine-rich re 99.2 5.2E-12 1.1E-16 132.1 0.6 82 355-438 21-118 (319)
25 cd00116 LRR_RI Leucine-rich re 99.1 4.3E-11 9.3E-16 125.2 2.3 231 335-607 23-289 (319)
26 PF14580 LRR_9: Leucine-rich r 99.0 7.9E-10 1.7E-14 101.7 6.0 118 344-466 6-126 (175)
27 KOG3207 Beta-tubulin folding c 98.9 4.8E-10 1E-14 112.6 1.1 87 379-466 119-210 (505)
28 PF14580 LRR_9: Leucine-rich r 98.9 3.4E-09 7.4E-14 97.5 6.5 130 330-463 14-150 (175)
29 KOG0532 Leucine-rich repeat (L 98.8 2.9E-10 6.2E-15 117.7 -3.5 107 356-467 74-180 (722)
30 KOG4341 F-box protein containi 98.8 2.4E-10 5.3E-15 114.1 -4.0 299 357-715 138-463 (483)
31 KOG1259 Nischarin, modulator o 98.7 3.7E-09 8E-14 101.0 -0.4 134 330-468 279-414 (490)
32 COG4886 Leucine-rich repeat (L 98.6 1.8E-08 3.9E-13 108.5 4.5 196 339-591 97-295 (394)
33 COG4886 Leucine-rich repeat (L 98.6 5.8E-08 1.3E-12 104.6 8.4 193 361-609 97-290 (394)
34 KOG3207 Beta-tubulin folding c 98.6 7.4E-09 1.6E-13 104.3 1.3 134 332-467 118-260 (505)
35 KOG1259 Nischarin, modulator o 98.5 1.5E-08 3.2E-13 96.9 0.1 78 382-463 285-362 (490)
36 KOG2120 SCF ubiquitin ligase, 98.5 3.6E-09 7.8E-14 101.1 -5.1 181 406-668 186-374 (419)
37 PF13855 LRR_8: Leucine rich r 98.5 1.3E-07 2.8E-12 71.3 3.9 60 357-417 1-61 (61)
38 KOG0532 Leucine-rich repeat (L 98.5 2.2E-08 4.8E-13 104.1 -0.9 133 331-468 117-249 (722)
39 KOG4341 F-box protein containi 98.4 7.5E-09 1.6E-13 103.7 -6.2 284 336-676 139-445 (483)
40 PLN03150 hypothetical protein; 98.4 9.4E-07 2E-11 99.9 9.7 108 358-466 419-528 (623)
41 PF13855 LRR_8: Leucine rich r 98.4 2.5E-07 5.4E-12 69.7 3.3 58 406-464 2-60 (61)
42 KOG1909 Ran GTPase-activating 98.3 2.7E-07 5.9E-12 90.7 2.4 243 353-643 26-308 (382)
43 KOG2120 SCF ubiquitin ligase, 98.2 5.5E-08 1.2E-12 93.1 -3.8 85 381-466 185-273 (419)
44 PRK15386 type III secretion pr 98.2 9.4E-06 2E-10 84.1 10.5 72 378-462 49-121 (426)
45 KOG0531 Protein phosphatase 1, 98.2 1.7E-07 3.7E-12 101.1 -2.8 122 337-464 74-197 (414)
46 PLN03150 hypothetical protein; 98.1 7.1E-06 1.5E-10 92.8 8.5 110 336-445 419-532 (623)
47 KOG0531 Protein phosphatase 1, 98.0 3.4E-07 7.4E-12 98.8 -3.2 105 356-466 71-175 (414)
48 PF12799 LRR_4: Leucine Rich r 98.0 6.9E-06 1.5E-10 56.5 4.0 39 406-445 2-40 (44)
49 PF12799 LRR_4: Leucine Rich r 98.0 7.7E-06 1.7E-10 56.3 3.7 40 381-421 1-40 (44)
50 KOG4579 Leucine-rich repeat (L 97.9 1.6E-06 3.5E-11 73.7 -0.9 112 334-447 26-141 (177)
51 KOG1859 Leucine-rich repeat pr 97.9 5.2E-07 1.1E-11 96.5 -5.4 102 358-465 165-266 (1096)
52 PRK15386 type III secretion pr 97.9 5.3E-05 1.2E-09 78.6 8.8 83 333-426 50-136 (426)
53 KOG1909 Ran GTPase-activating 97.8 3.1E-06 6.7E-11 83.5 -0.2 250 377-668 26-309 (382)
54 KOG2982 Uncharacterized conser 97.8 1.3E-05 2.8E-10 77.3 2.5 96 339-438 49-156 (418)
55 KOG1644 U2-associated snRNP A' 97.7 4.3E-05 9.3E-10 69.8 5.0 102 335-437 42-149 (233)
56 KOG2982 Uncharacterized conser 97.6 1.1E-05 2.4E-10 77.7 0.1 22 628-649 244-265 (418)
57 KOG1859 Leucine-rich repeat pr 97.6 9.4E-07 2E-11 94.7 -8.1 128 333-467 162-293 (1096)
58 KOG3665 ZYG-1-like serine/thre 97.6 6.9E-05 1.5E-09 84.6 5.5 129 336-466 123-263 (699)
59 KOG3665 ZYG-1-like serine/thre 97.2 0.00011 2.3E-09 83.1 1.6 108 356-466 121-233 (699)
60 KOG4579 Leucine-rich repeat (L 97.2 8.1E-05 1.8E-09 63.6 -0.1 87 336-424 54-142 (177)
61 KOG1644 U2-associated snRNP A' 96.8 0.0016 3.4E-08 59.8 4.9 103 357-463 42-150 (233)
62 KOG2739 Leucine-rich acidic nu 96.4 0.0022 4.8E-08 61.6 2.8 83 380-463 64-153 (260)
63 KOG2739 Leucine-rich acidic nu 96.3 0.0014 3.1E-08 62.8 1.0 101 335-438 43-153 (260)
64 KOG1947 Leucine rich repeat pr 96.3 0.00058 1.2E-08 75.8 -1.9 88 377-464 184-280 (482)
65 KOG2123 Uncharacterized conser 96.3 0.0003 6.6E-09 67.4 -3.7 62 377-440 37-100 (388)
66 KOG1947 Leucine rich repeat pr 96.1 0.00087 1.9E-08 74.4 -1.6 113 354-466 185-308 (482)
67 COG5238 RNA1 Ran GTPase-activa 96.1 0.0064 1.4E-07 58.5 4.1 43 424-466 88-133 (388)
68 KOG2123 Uncharacterized conser 96.0 0.00075 1.6E-08 64.8 -2.5 97 335-434 19-123 (388)
69 COG5238 RNA1 Ran GTPase-activa 95.7 0.018 3.9E-07 55.5 5.4 109 356-466 29-170 (388)
70 PF00560 LRR_1: Leucine Rich R 95.5 0.0045 9.7E-08 35.3 0.4 7 385-391 4-10 (22)
71 PF00560 LRR_1: Leucine Rich R 94.9 0.011 2.5E-07 33.6 0.8 21 406-426 1-21 (22)
72 PF13306 LRR_5: Leucine rich r 94.8 0.069 1.5E-06 46.9 6.2 103 353-462 8-112 (129)
73 PF13306 LRR_5: Leucine rich r 94.4 0.11 2.4E-06 45.6 6.4 114 334-455 11-128 (129)
74 KOG3864 Uncharacterized conser 94.3 0.0041 9E-08 57.3 -3.0 17 595-611 150-166 (221)
75 PF13504 LRR_7: Leucine rich r 93.9 0.038 8.3E-07 29.1 1.5 15 406-420 2-16 (17)
76 PF13504 LRR_7: Leucine rich r 93.9 0.038 8.2E-07 29.2 1.4 17 657-674 1-17 (17)
77 KOG3864 Uncharacterized conser 92.6 0.013 2.7E-07 54.2 -2.8 85 520-611 103-191 (221)
78 KOG0473 Leucine-rich repeat pr 91.1 0.0077 1.7E-07 56.5 -6.0 84 354-439 39-122 (326)
79 KOG0473 Leucine-rich repeat pr 91.0 0.01 2.2E-07 55.8 -5.3 94 370-466 31-124 (326)
80 smart00369 LRR_TYP Leucine-ric 90.1 0.29 6.3E-06 29.1 2.3 20 405-424 2-21 (26)
81 smart00370 LRR Leucine-rich re 90.1 0.29 6.3E-06 29.1 2.3 20 405-424 2-21 (26)
82 PRK04841 transcriptional regul 84.3 6.1 0.00013 47.8 11.1 145 142-308 185-333 (903)
83 smart00367 LRR_CC Leucine-rich 82.5 0.8 1.7E-05 27.2 1.3 17 656-672 1-17 (26)
84 smart00369 LRR_TYP Leucine-ric 81.9 1.2 2.6E-05 26.3 1.9 18 381-399 2-19 (26)
85 smart00370 LRR Leucine-rich re 81.9 1.2 2.6E-05 26.3 1.9 18 381-399 2-19 (26)
86 smart00364 LRR_BAC Leucine-ric 73.6 2.2 4.7E-05 25.3 1.2 17 406-422 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 57.1 8.7 0.00019 22.9 1.7 15 405-419 2-16 (26)
88 PF13516 LRR_6: Leucine Rich r 52.6 7.1 0.00015 22.4 0.8 13 405-417 2-14 (24)
89 PF07725 LRR_3: Leucine Rich R 41.2 12 0.00026 20.7 0.5 18 406-423 1-18 (20)
90 smart00368 LRR_RI Leucine rich 36.6 25 0.00054 21.2 1.5 14 405-418 2-15 (28)
91 KOG3763 mRNA export factor TAP 31.4 36 0.00078 37.1 2.6 17 336-352 219-235 (585)
92 KOG3763 mRNA export factor TAP 31.3 20 0.00043 39.0 0.7 34 573-606 217-254 (585)
93 KOG4308 LRR-containing protein 31.2 1.3 2.7E-05 48.4 -8.4 80 337-417 89-184 (478)
94 PRK00080 ruvB Holliday junctio 24.4 1E+02 0.0022 32.0 4.5 107 165-288 202-310 (328)
95 PHA01750 hypothetical protein 23.4 1.7E+02 0.0037 21.6 4.0 29 29-57 38-66 (75)
96 PF08946 Osmo_CC: Osmosensory 21.8 1.8E+02 0.004 19.9 3.6 26 29-54 15-40 (46)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-69 Score=609.68 Aligned_cols=686 Identities=39% Similarity=0.637 Sum_probs=573.4
Q ss_pred CCCceecccc-hh-hHHhHHhhhccccchhhchHHhHHHHHHHHHHhhhhhHHHHHHHHHhhhcccccchhHHHhHHHHH
Q 038165 1 MGNLISTFLQ-PD-FFNRTLNCVGQQAKYIWGLEKNLEGLETELHKLTRTRDDLKTRVEVEEQRPRTRRTNQVAGWLEDV 78 (731)
Q Consensus 1 m~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~v~~wL~~v 78 (731)
||++.++.+- ++ +.+....|+...-.|+...++|+..+++.++++++.+++...++..++..+...+..+++.|+..+
T Consensus 1 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred CCeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899988884 44 999999999999999999999999999999999999999999998877766456777889999999
Q ss_pred HHHHHHHHHHHHhhHHHhhhcccCCCCCcchhhhhcchHHHHHHHHHHHHHhhCCCcceEeee-cCCccccccccccccc
Q 038165 79 QKLENEFTKLQQVKAQEMDRLCLGGLCSKNLASSYDFGRKVVMLTDRVINLRKDGEKIEVVVE-KAPDGAAIELPLAQTI 157 (731)
Q Consensus 79 ~~~~d~v~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~gsrv~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 157 (731)
..++....++....+...++.|+++.|+.+....++.+.||...++.++.+...+. +..... ..+.+...+.+.+...
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~-~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV-FEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc-eecccccccchhhcccCCCCccc
Confidence 99988899999888889999999999999999999999999999999999988887 555543 2211222222222221
Q ss_pred -cccccc-------------------------------------------------------------------------
Q 038165 158 -VGQELL------------------------------------------------------------------------- 163 (731)
Q Consensus 158 -~~~~~~------------------------------------------------------------------------- 163 (731)
+|.+..
T Consensus 160 ~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 160 DVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred cccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 333333
Q ss_pred --------------------------------------------------------------------------------
Q 038165 164 -------------------------------------------------------------------------------- 163 (731)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (731)
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence
Q ss_pred ---------------------HHHHHHHHHHHcCCchHHHHHHHHHhcCCCChhHHHHHHHHhhcc-cCCCCCChHHHHh
Q 038165 164 ---------------------VDRLAETLARECGGLPLALKTVGRAMKSQRKVGDWKRAIHKMTTS-ASKFSGMKEEVFS 221 (731)
Q Consensus 164 ---------------------~~~l~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~l~~~-~~~~~~~~~~i~~ 221 (731)
+.++|++||++|+|||||++++|+.|+.|++.++|+++.+.+.+. ..+.+++++.|++
T Consensus 320 ~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 799999999999999999999999999999999999999999987 6677788889999
Q ss_pred hhhhhccCCChhhHHHHHhHhcccCCCcccChhhHHHHHHHcCccccc-------hhhhhHHHHHHHhhcccccC----C
Q 038165 222 RLKFSYDSLSTDELRSCLLYCCLYPEDYEIPRRELIDYWISEGFVYDF-------DDGCDFIDDLLQACLLEEEG----D 290 (731)
Q Consensus 222 ~L~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~w~a~g~~~~~-------~~g~~~~~~L~~~sli~~~~----~ 290 (731)
+|++|||.||+ ++|.||+|||.||+||.|++++|+.+|+||||+... ++|+.|+.+|++++|++... .
T Consensus 400 iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 400 ILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred hhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 99999999996 999999999999999999999999999999999773 89999999999999999963 3
Q ss_pred CccchhhHHHHHHHHHhhccCcccceEEEEcCCccccCccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCC--
Q 038165 291 DHVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENP-- 368 (731)
Q Consensus 291 ~~~~mhdli~dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~-- 368 (731)
.+|+|||++||||.++|++.+..+++.++..+.+....|+...+..+|++++.++.+..++.-..+++|++|.+.+|.
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~ 558 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDW 558 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchh
Confidence 899999999999999999877766777777776777788899999999999999999999999999999999999996
Q ss_pred ccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccc
Q 038165 369 IVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQL 448 (731)
Q Consensus 369 l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~ 448 (731)
+..++..+|..++.|++|||++|..+.++|++|+.|.|||||+++++.++++|.++++|.+|.+||+..+..+..+|. +
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-I 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-h
Confidence 788999999999999999999998999999999999999999999999999999999999999999999988777755 3
Q ss_pred cCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeec
Q 038165 449 ISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQC 528 (731)
Q Consensus 449 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 528 (731)
...|++||+|.+...... .....++++..|++|+.+.++..+....+.+.....+.+..+.+.+.++
T Consensus 638 ~~~L~~Lr~L~l~~s~~~-------------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~ 704 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALS-------------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC 704 (889)
T ss_pred hhhcccccEEEeeccccc-------------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc
Confidence 667999999999876522 2256788889999999999887666555666666666666666666443
Q ss_pred CCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-CCCchhhccCCccEEeeeccc
Q 038165 529 ESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCG 607 (731)
Q Consensus 529 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~ 607 (731)
.......++..+.+|+.|.|.+|.+.+....+....... ..|+++..+.+.+|.. ..+.|....|+|+.|.+..|.
T Consensus 705 -~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~--~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 705 -SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVL--LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred -ccceeecccccccCcceEEEEcCCCchhhcccccccchh--hhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 234455568889999999999999987555444321111 1367888888999999 999999999999999999999
Q ss_pred ccccccccccccccccccCCCCccCcCccEe-eccccccccccCCCCcCCCCccEEeeccccCCCCCCCCCCCCC-C--c
Q 038165 608 DMEEIVSVDKLRDISGIIGSERNFFAQLESL-SVWRGINLKSVYPNPLPFPKLKKIEVRECRQLKKLPLNSSSAK-E--R 683 (731)
Q Consensus 608 ~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L-~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~L~~lP~~~~~~~-L--~ 683 (731)
.+++++......... ......|.++..+ .+.+.+.+.++......+++|+.+.+..||+++++|....... - .
T Consensus 782 ~~e~~i~~~k~~~~l---~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~ 858 (889)
T KOG4658|consen 782 LLEDIIPKLKALLEL---KELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEE 858 (889)
T ss_pred ccccCCCHHHHhhhc---ccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceecccc
Confidence 999887644322111 1134567777777 5888888888888888889999999999999999999776543 1 2
Q ss_pred ceEEecchhhhhhcccCcccccccc
Q 038165 684 RVVIEGSKEWWEELQWEDQATQNAF 708 (731)
Q Consensus 684 ~l~i~~~~~~~~~l~w~~~~~~~~~ 708 (731)
.+......+|.+.++|++++++..+
T Consensus 859 ~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 859 KLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ceeecCCccceeeEEehhhhhhhhc
Confidence 2333345678999999999998776
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-60 Score=570.07 Aligned_cols=624 Identities=18% Similarity=0.212 Sum_probs=439.3
Q ss_pred CCCceecccchhhHHhHHhhhccccchhhch--HHhHHHHHH----HHHHhhhhhHHHHHHHHHhhhcccccchhHHHhH
Q 038165 1 MGNLISTFLQPDFFNRTLNCVGQQAKYIWGL--EKNLEGLET----ELHKLTRTRDDLKTRVEVEEQRPRTRRTNQVAGW 74 (731)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~v~~w 74 (731)
|||+||||+|..+++.+...+ +..+|+... ....+..+. .......+++++...+....... ......++.+
T Consensus 215 ~gGiGKTTLA~~l~~~l~~~F-~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~-~~~~~~~~~~ 292 (1153)
T PLN03210 215 SSGIGKTTIARALFSRLSRQF-QSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK-IYHLGAMEER 292 (1153)
T ss_pred CCCCchHHHHHHHHHHHhhcC-CeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc-cCCHHHHHHH
Confidence 899999999999999876643 333344321 111100000 00001122333344432222111 1122334555
Q ss_pred HH--HHHHHHHHHHHHHHhhHHHhhhcccCCCCCcchhhhhcchHHHHHHHHHHHHHhhCCCcceEeeecCCcccccccc
Q 038165 75 LE--DVQKLENEFTKLQQVKAQEMDRLCLGGLCSKNLASSYDFGRKVVMLTDRVINLRKDGEKIEVVVEKAPDGAAIELP 152 (731)
Q Consensus 75 L~--~v~~~~d~v~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~gsrv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 152 (731)
+. ++..++|+|++..+.... +....|++.|+||++|||+.+.+...++...+....+..++|.++|
T Consensus 293 L~~krvLLVLDdv~~~~~l~~L------------~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF 360 (1153)
T PLN03210 293 LKHRKVLIFIDDLDDQDVLDAL------------AGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMF 360 (1153)
T ss_pred HhCCeEEEEEeCCCCHHHHHHH------------HhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHH
Confidence 55 556667777665544443 2233567789999999999999988877567777788888999999
Q ss_pred ccccccccccc---HHHHHHHHHHHcCCchHHHHHHHHHhcCCCChhHHHHHHHHhhcccCCCCCChHHHHhhhhhhccC
Q 038165 153 LAQTIVGQELL---VDRLAETLARECGGLPLALKTVGRAMKSQRKVGDWKRAIHKMTTSASKFSGMKEEVFSRLKFSYDS 229 (731)
Q Consensus 153 ~~~~~~~~~~~---~~~l~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sy~~ 229 (731)
+++| |+.+.+ +++++++||++|+|+||||+++|+.|++ ++..+|++++++|++.+.. +|.++|++|||+
T Consensus 361 ~~~A-f~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~~------~I~~~L~~SYd~ 432 (1153)
T PLN03210 361 CRSA-FKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLDG------KIEKTLRVSYDG 432 (1153)
T ss_pred HHHh-cCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCccH------HHHHHHHHhhhc
Confidence 9999 876644 8899999999999999999999999999 6899999999999886654 899999999999
Q ss_pred CChhhHHHHHhHhcccCCCcccChhhHHHHHHHcCccccchhhhhHHHHHHHhhcccccCCCccchhhHHHHHHHHHhhc
Q 038165 230 LSTDELRSCLLYCCLYPEDYEIPRRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGDDHVKMHDMIREMSLWIACT 309 (731)
Q Consensus 230 L~~~~~k~cfl~~a~fp~~~~~~~~~li~~w~a~g~~~~~~~g~~~~~~L~~~sli~~~~~~~~~mhdli~dl~~~i~~~ 309 (731)
|+++..|.||+||||||+++.++ .+..|.+.+.... +. .++.|+++||+++. .+.++|||++|+||++++++
T Consensus 433 L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-~~---~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~ 504 (1153)
T PLN03210 433 LNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-NI---GLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRA 504 (1153)
T ss_pred cCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-hh---ChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHh
Confidence 98746899999999999997543 3667777765543 33 39999999999986 56899999999999999988
Q ss_pred c--CcccceEEEEcCCccccCccccccccceEEEeecCCcccC----CCCCCCCCeeEEEcccCCc-------cccChhh
Q 038165 310 V--DKEEQNFLVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESL----SEIPTCPRLVTLLVDENPI-------VEITDGF 376 (731)
Q Consensus 310 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l----~~~~~~~~L~~L~l~~~~l-------~~~~~~~ 376 (731)
+ .|+++.++|..++....+....+..+++++++..+.+..+ ..|..|++|+.|.+..+.. ..+|.++
T Consensus 505 ~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~ 584 (1153)
T PLN03210 505 QSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF 584 (1153)
T ss_pred hcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcch
Confidence 6 4677889998876655556666778899999887776653 3468899999999876531 1355553
Q ss_pred hcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCc
Q 038165 377 FQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLE 456 (731)
Q Consensus 377 ~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~ 456 (731)
..-..+||+|++.++ .++.+|..+ .+.+|++|++.+++++.+|.++..+++|+.|++++|..++.+|. ++.+++|+
T Consensus 585 ~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le 660 (1153)
T PLN03210 585 DYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLE 660 (1153)
T ss_pred hhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCccc
Confidence 333457999999998 899999888 56899999999999999999999999999999999888888887 88899999
Q ss_pred EEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccc
Q 038165 457 VLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVL 536 (731)
Q Consensus 457 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 536 (731)
+|++.+|... ..++.. +.+|++|+.+.+..+. .+..++... ..++|+.|.+++|......+.
T Consensus 661 ~L~L~~c~~L------------~~lp~s---i~~L~~L~~L~L~~c~--~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 661 TLKLSDCSSL------------VELPSS---IQYLNKLEDLDMSRCE--NLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred EEEecCCCCc------------cccchh---hhccCCCCEEeCCCCC--CcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 9999998765 222333 3445555555554322 222222222 245778888887763332221
Q ss_pred cccccCCccEEeccCCCccceeecCc-cccc--------------------cccccccCCccEEEEeccCC--CCCchhh
Q 038165 537 HLAYMENLQELDLEYCNLEEMKIDCP-EEVK--------------------KLFRNGFRSLNTVVLRSCRG--KDLTWLV 593 (731)
Q Consensus 537 ~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~--------------------~~~~~~l~~L~~L~L~~c~~--~~~~~l~ 593 (731)
..++|+.|+++++.+..+|.... ..+. ......+++|+.|+|++|+. ..|.+++
T Consensus 723 ---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 723 ---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred ---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 13567777777776655443210 0000 00112246788888888876 5677788
Q ss_pred ccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeecccccccccc--------------------CCCC
Q 038165 594 FVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSV--------------------YPNP 653 (731)
Q Consensus 594 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l--------------------~~~~ 653 (731)
.+++|+.|+|++|..++.++. .. .+++|+.|.|++|.++..+ |...
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~-------------~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si 865 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPT-------------GI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWI 865 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCC-------------CC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHH
Confidence 888888888888887777633 22 4566666666666555433 3334
Q ss_pred cCCCCccEEeeccccCCCCCCCCCCCCC-CcceEEecchhh
Q 038165 654 LPFPKLKKIEVRECRQLKKLPLNSSSAK-ERRVVIEGSKEW 693 (731)
Q Consensus 654 ~~lp~L~~L~l~~C~~L~~lP~~~~~~~-L~~l~i~~~~~~ 693 (731)
..+++|+.|++.+|++|+.+|......+ |+.+.+.+|...
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 4577888888888888888888776666 788888888655
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=7.5e-26 Score=231.94 Aligned_cols=329 Identities=21% Similarity=0.255 Sum_probs=241.9
Q ss_pred ceEEEEcCCccccCcc-ccccccceEEEeecCCcccC-CCCCCCCCeeEEEcccCCc--cccChhhhcCCCCccEEEcCC
Q 038165 315 QNFLVRAGVKLTEAPK-IEEWEGAKRVSLMGNGIESL-SEIPTCPRLVTLLVDENPI--VEITDGFFQSMSSLRVLSLSE 390 (731)
Q Consensus 315 ~~~~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~l-~~~~~~~~L~~L~l~~~~l--~~~~~~~~~~l~~L~~L~L~~ 390 (731)
-.|+..+...+..+|. +..+.+++|+++..|.+..+ ..+..++.||++.+..|.+ .++|+.+ -.+..|.+|||++
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di-F~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh-cccccceeeecch
Confidence 3566666666666653 55667899999999998776 4578999999999999985 4788884 4699999999999
Q ss_pred CCCCCcccccccCCcCCCEEeccCCCCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCc
Q 038165 391 NFHLSTLPSGISSLVSLHHLDLSSADITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVT 469 (731)
Q Consensus 391 ~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 469 (731)
| .+.+.|..+.+.+++-+|+|++|+|+.+|.. +-+|..|-+|||++| .+..+|+. +.++.+|++|.+++|.+.
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~--- 186 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN--- 186 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh---
Confidence 9 9999999999999999999999999999987 468999999999999 78999998 899999999999999765
Q ss_pred hhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEec
Q 038165 470 EEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDL 549 (731)
Q Consensus 470 ~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 549 (731)
...+.++++++.|.+|.++... .....++....-..+|..++++.+. ....+..+-++++|+.|++
T Consensus 187 ------------hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 187 ------------HFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred ------------HHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheecc
Confidence 5677888888888888776433 2344455555556678888888764 3334455778899999999
Q ss_pred cCCCccceeecCccccccccccccCCccEEEEeccCC-CCCchhhccCCccEEeeeccccc-ccccccc-----------
Q 038165 550 EYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDM-EEIVSVD----------- 616 (731)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l-~~l~~~~----------- 616 (731)
++|.++++...... -.+|++|+++.|.. ..|..+..|+.|+.|.+.++..- +-+++.-
T Consensus 253 S~N~iteL~~~~~~---------W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 253 SGNKITELNMTEGE---------WENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred CcCceeeeeccHHH---------HhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 99998886443321 36777777777777 66677777777777777654211 1111000
Q ss_pred cccccccccCCCCccCcCccEeeccccccccccCCCCcCCCCccEEeeccccCCCCCCC
Q 038165 617 KLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECRQLKKLPL 675 (731)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~L~~lP~ 675 (731)
.+.. .+..|+.+..++.|+.|.|. |+.|..+|..+.-+|.|+.|++++.|+|..-|.
T Consensus 324 anN~-LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 324 ANNK-LELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hccc-cccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 0011 12226666666777777663 356666666666667777777777777765444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=5e-23 Score=247.39 Aligned_cols=333 Identities=18% Similarity=0.127 Sum_probs=206.8
Q ss_pred ccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEec
Q 038165 333 EWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDL 412 (731)
Q Consensus 333 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L 412 (731)
..++++++++++|.+........+++|++|++++|.+....+..++.+++|++|+|++|.....+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45677777777776654433456777777777777765443344777778888888777444567777777888888888
Q ss_pred cCCCCCC-cchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccC
Q 038165 413 SSADITG-LPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGL 491 (731)
Q Consensus 413 ~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L 491 (731)
++|.+.. +|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.+ ..+..+ .++
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~------------~~p~~l---~~l 259 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG------------PIPSSL---GNL 259 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc------------ccChhH---hCC
Confidence 7776654 6777777888888888777555566665 7777888888887776652 223333 334
Q ss_pred CCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCcccccccccc
Q 038165 492 KRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRN 571 (731)
Q Consensus 492 ~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 571 (731)
++|+.+.+..+.... .++.......+|+.|++++|......+..+.++++|+.|++++|.+....+..+ .
T Consensus 260 ~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--------~ 329 (968)
T PLN00113 260 KNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--------T 329 (968)
T ss_pred CCCCEEECcCCeeec--cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH--------h
Confidence 444444443222110 011111223467777777776555555556777788888887777665322222 2
Q ss_pred ccCCccEEEEeccCC--CCCchhhccCCccEEeeecccccccccccc-----------cccccccccCCCCccCcCccEe
Q 038165 572 GFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVD-----------KLRDISGIIGSERNFFAQLESL 638 (731)
Q Consensus 572 ~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~-----------~~~~~~~~~~~~~~~~~~L~~L 638 (731)
.+++|+.|++++|.. ..+.+++.+++|+.|++++|.....++..- ....+....|..+..+++|+.|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 367778888877777 455667777778888877664322221100 0001111225556677788888
Q ss_pred eccccccccccCCCCcCCCCccEEeeccccCCCCCCCCCCCCC-CcceEEecch
Q 038165 639 SVWRGINLKSVYPNPLPFPKLKKIEVRECRQLKKLPLNSSSAK-ERRVVIEGSK 691 (731)
Q Consensus 639 ~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~L~~lP~~~~~~~-L~~l~i~~~~ 691 (731)
.+.+|.--..+|.....+++|+.|++++|.--..+|......+ |+.+.+.+|.
T Consensus 410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 8877654445666666778888888887765555555444444 7777777663
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=3.5e-22 Score=240.06 Aligned_cols=320 Identities=18% Similarity=0.156 Sum_probs=207.0
Q ss_pred cccccceEEEeecCCccc-CC-CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCE
Q 038165 332 EEWEGAKRVSLMGNGIES-LS-EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHH 409 (731)
Q Consensus 332 ~~~~~l~~l~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~ 409 (731)
....+++.+++.+|.+.. ++ .+..+++|++|++++|.+....+..+.++++|++|++++|.....+|..++++.+|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 345678888888887753 33 3577888888888888866444444778888888888888555567888888888888
Q ss_pred EeccCCCCC-CcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhh
Q 038165 410 LDLSSADIT-GLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKEL 488 (731)
Q Consensus 410 L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l 488 (731)
|++++|++. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.+.. +..+.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~------------p~~l~-- 281 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPI------------PPSIF-- 281 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccC------------chhHh--
Confidence 888888776 47888888888888888888554566665 788888888888888765321 22222
Q ss_pred ccCCCCcEEEEEeechhHHHhhhCCchhhccc------------------------eEEEEeecCCCCcccccccccCCc
Q 038165 489 LGLKRLNVLSWTFRSSLAVQKFLKYPKLVSIT------------------------QSVWVYQCESAPFNVLHLAYMENL 544 (731)
Q Consensus 489 ~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L------------------------~~L~l~~~~~~~~~~~~l~~l~~L 544 (731)
++++|+.+++..+.... .++......++| +.|++++|......+..+..+++|
T Consensus 282 -~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L 358 (968)
T PLN00113 282 -SLQKLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358 (968)
T ss_pred -hccCcCEEECcCCeecc--CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence 23333333332211100 001111112244 444444444333333334444555
Q ss_pred cEEeccCCCccceeecCccccccccccccCCccEEEEeccCC--CCCchhhccCCccEEeeecccccccccccccccccc
Q 038165 545 QELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDIS 622 (731)
Q Consensus 545 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~ 622 (731)
+.|++++|.+....+... ..+++|+.|++++|.. ..+.+++.+++|+.|++++|.....+
T Consensus 359 ~~L~Ls~n~l~~~~p~~~--------~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~---------- 420 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEGL--------CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL---------- 420 (968)
T ss_pred cEEECCCCeeEeeCChhH--------hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC----------
Confidence 555555554433111111 1246677777777766 45556777778888888777433222
Q ss_pred cccCCCCccCcCccEeeccccccccccCCCCcCCCCccEEeeccccCCCCCCCCCCCCCCcceEEecc
Q 038165 623 GIIGSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECRQLKKLPLNSSSAKERRVVIEGS 690 (731)
Q Consensus 623 ~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~L~~lP~~~~~~~L~~l~i~~~ 690 (731)
|..+..+++|+.|+++++.--..++.....+++|+.|++.+|.-...+|.......|+.+++.+|
T Consensus 421 ---p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n 485 (968)
T PLN00113 421 ---PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN 485 (968)
T ss_pred ---ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCC
Confidence 66788999999999999765555555566789999999999998888888665555888988876
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=8.2e-22 Score=236.80 Aligned_cols=312 Identities=21% Similarity=0.285 Sum_probs=214.2
Q ss_pred ccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccC
Q 038165 335 EGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSS 414 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~ 414 (731)
.++|.+.+.++.+..+|....+.+|+.|++.++.+..++.+ +..+++|++|+|+++..++.+| .++.+++|++|+|++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 36888888888888888777889999999999998888877 6789999999999887788888 588899999999999
Q ss_pred C-CCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCc-ccchhhhc---
Q 038165 415 A-DITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADA-EPLMKELL--- 489 (731)
Q Consensus 415 ~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~--- 489 (731)
| .+..+|.+++++++|+.|++++|..++.+|.. + ++++|++|++++|......|+...+...-.+ ...+..++
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc
Confidence 8 78889999999999999999999999999985 3 8999999999999765332211110000000 00000110
Q ss_pred cCCCCcEEEEEeechhHH----Hhhh-CCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccc-eeecCcc
Q 038165 490 GLKRLNVLSWTFRSSLAV----QKFL-KYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEE-MKIDCPE 563 (731)
Q Consensus 490 ~L~~L~~l~~~~~~~~~~----~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~ 563 (731)
.+.+|..|.+.......+ ..+. .......+|+.|++++|......+.+++++++|+.|++++|...+ +|...
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-- 822 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-- 822 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--
Confidence 122222222211000000 0000 001112466677777666545555556677777777777765444 33221
Q ss_pred ccccccccccCCccEEEEeccCC-CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccc
Q 038165 564 EVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWR 642 (731)
Q Consensus 564 ~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 642 (731)
.+++|+.|++++|.. ..++.+ .++|+.|+|+++ .++.+ |.++..+++|+.|+|.+
T Consensus 823 --------~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i~~i-------------P~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 823 --------NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GIEEV-------------PWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred --------CccccCEEECCCCCcccccccc--ccccCEeECCCC-CCccC-------------hHHHhcCCCCCEEECCC
Confidence 256777777777765 333322 356777777654 33433 66888999999999999
Q ss_pred cccccccCCCCcCCCCccEEeeccccCCCCCCCC
Q 038165 643 GINLKSVYPNPLPFPKLKKIEVRECRQLKKLPLN 676 (731)
Q Consensus 643 ~~~L~~l~~~~~~lp~L~~L~l~~C~~L~~lP~~ 676 (731)
|++|+.++.....+++|+.+++.+|++|+.++..
T Consensus 879 C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 879 CNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred CCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 9999999998889999999999999999987763
No 7
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.87 E-value=1.2e-25 Score=230.95 Aligned_cols=151 Identities=34% Similarity=0.618 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHHhhCCC-cceEeeecCCccccccccccccccccc----ccHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038165 116 GRKVVMLTDRVINLRKDGE-KIEVVVEKAPDGAAIELPLAQTIVGQE----LLVDRLAETLARECGGLPLALKTVGRAMK 190 (731)
Q Consensus 116 gsrv~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~l~~~iv~~c~GlPLal~~~g~~L~ 190 (731)
|++|++|||+.......+. ...+....+..+++.++|...+ +... ..+.+++++|+++|+|+||||+++|+.|+
T Consensus 129 ~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~-~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~ 207 (287)
T PF00931_consen 129 GSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRA-GRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLR 207 (287)
T ss_dssp S-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHH-TSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 4555555555444332221 2566677888889999999887 5544 33788999999999999999999999997
Q ss_pred CCCChhHHHHHHHHhhcccCCCCCChHHHHhhhhhhccCCChhhHHHHHhHhcccCCCcccChhhHHHHHHHcCcccc
Q 038165 191 SQRKVGDWKRAIHKMTTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCCLYPEDYEIPRRELIDYWISEGFVYD 268 (731)
Q Consensus 191 ~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~w~a~g~~~~ 268 (731)
.+.+..+|+++++.+.....+..+....+..++.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++||+..
T Consensus 208 ~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 208 SKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccccccccccccccccccccccccccccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 766889999999998887655444556899999999999999 99999999999999999999999999999999875
No 8
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.85 E-value=5.8e-23 Score=233.71 Aligned_cols=322 Identities=21% Similarity=0.256 Sum_probs=201.1
Q ss_pred eEEEEcCCccccCccccccccceEEEeecCC--cccCCC--CCCCCCeeEEEcccCC-ccccChhhhcCCCCccEEEcCC
Q 038165 316 NFLVRAGVKLTEAPKIEEWEGAKRVSLMGNG--IESLSE--IPTCPRLVTLLVDENP-IVEITDGFFQSMSSLRVLSLSE 390 (731)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~ 390 (731)
..++........++.....++++.+-+..|. +..++. |..++.|++|++++|. +.++|.. ++.+-+||||++++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccC
Confidence 3444444455555555555689999999886 566665 7899999999999887 7788887 89999999999999
Q ss_pred CCCCCcccccccCCcCCCEEeccCC-CCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCc
Q 038165 391 NFHLSTLPSGISSLVSLHHLDLSSA-DITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVT 469 (731)
Q Consensus 391 ~~~~~~lP~~i~~l~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 469 (731)
+ .+..+|.++++|..|.|||+..+ .+..+|.....|++|++|.+.... .......++.+.+|++|....+...+.
T Consensus 605 t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 605 T-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred C-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh-
Confidence 9 99999999999999999999998 555566666779999999998763 111111133444444444433322210
Q ss_pred hhhhhhhhcCCcccchhhhccCCCCcEEEEEee-chhHHHhhhCCchhhccceEEEEeecCCCCccccc-----cc-ccC
Q 038165 470 EEEEANVLCADAEPLMKELLGLKRLNVLSWTFR-SSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLH-----LA-YME 542 (731)
Q Consensus 470 ~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-----l~-~l~ 542 (731)
..+..+..+..|..+..... ................+|+.|.+.+|...+..... .. .++
T Consensus 681 -------------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 681 -------------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred -------------HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 11122222222221111100 00111222223334468888888888743222211 11 144
Q ss_pred CccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC--CCCchhhccCCccEEeeecccccccccccccccc
Q 038165 543 NLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRD 620 (731)
Q Consensus 543 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~ 620 (731)
++..+.+.+|.....+... ...++|+.|++..|.. ..++....+..++.+.+..+ .+.....
T Consensus 748 ~l~~~~~~~~~~~r~l~~~---------~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~------ 811 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTWL---------LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRM------ 811 (889)
T ss_pred HHHHHHhhccccccccchh---------hccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-cccccee------
Confidence 6666666676665532111 2368999999999999 55566667777776444332 2222210
Q ss_pred cccccCCCCccCcCccEeeccccccccccCCCC----cCCCCccEEeeccc-cCCCCCCCCC
Q 038165 621 ISGIIGSERNFFAQLESLSVWRGINLKSVYPNP----LPFPKLKKIEVREC-RQLKKLPLNS 677 (731)
Q Consensus 621 ~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~----~~lp~L~~L~l~~C-~~L~~lP~~~ 677 (731)
-.+.++|+++..+.+... .++.+.... ..+|.+.++.+.+| +++..+|...
T Consensus 812 -----~~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 812 -----LCSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred -----eecCCCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCCcc
Confidence 124556666666666553 355555544 55789999999997 9999999863
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=7.4e-23 Score=210.16 Aligned_cols=298 Identities=16% Similarity=0.149 Sum_probs=165.0
Q ss_pred cccccceEEEeecCCccc--C-CCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccc-cCCcCC
Q 038165 332 EEWEGAKRVSLMGNGIES--L-SEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGI-SSLVSL 407 (731)
Q Consensus 332 ~~~~~l~~l~l~~~~~~~--l-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i-~~l~~L 407 (731)
..++.+|.+.+..|+++. + +.+..+..|.+|++++|++.+.|.+ +...+++-+|+|++| .+.++|..+ -+|..|
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDL 152 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhH
Confidence 334566666666666543 2 4457777777777777777777776 667777777777777 777777653 467777
Q ss_pred CEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhh
Q 038165 408 HHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKE 487 (731)
Q Consensus 408 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 487 (731)
-+|||++|+++.+|+.+..|.+|++|+|++|.. ...--..+..|++|++|++++..-+- .++|.++..
T Consensus 153 LfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRTl-----------~N~Ptsld~ 220 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRTL-----------DNIPTSLDD 220 (1255)
T ss_pred hhhccccchhhhcCHHHHHHhhhhhhhcCCChh-hHHHHhcCccchhhhhhhcccccchh-----------hcCCCchhh
Confidence 777777777777777777777777777777732 11110003345666677776654331 233444444
Q ss_pred hccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccc---
Q 038165 488 LLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEE--- 564 (731)
Q Consensus 488 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~--- 564 (731)
+.+|..+.. +.++..... ...-...+|+.|+++++..... ........+|++|+++.|++..+|.....-
T Consensus 221 l~NL~dvDl---S~N~Lp~vP---ecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL 293 (1255)
T KOG0444|consen 221 LHNLRDVDL---SENNLPIVP---ECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKL 293 (1255)
T ss_pred hhhhhhccc---cccCCCcch---HHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhccchHHHhhhHHH
Confidence 444433322 211111111 1111123455555555532111 111223344555555555544433222110
Q ss_pred -------------cccccccccCCccEEEEeccCC-CCCchhhccCCccEEeeecccccccccccccccccccccCCCCc
Q 038165 565 -------------VKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERN 630 (731)
Q Consensus 565 -------------~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~ 630 (731)
.-+-..+.+.+|+.+...+|.. -.|..+..++.|+.|.|+.+. +-.+ |+.+.
T Consensus 294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTL-------------PeaIH 359 (1255)
T KOG0444|consen 294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITL-------------PEAIH 359 (1255)
T ss_pred HHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeec-------------hhhhh
Confidence 0000112355566666666555 555556666666666665443 2222 78899
Q ss_pred cCcCccEeeccccccccccCCCCcCCCCccEEee
Q 038165 631 FFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEV 664 (731)
Q Consensus 631 ~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l 664 (731)
-++-|+.|++...|+|.-=|....+-.+|+.-+|
T Consensus 360 lL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred hcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 9999999999999998765544333344554444
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-21 Score=200.13 Aligned_cols=321 Identities=18% Similarity=0.185 Sum_probs=175.6
Q ss_pred ccccceEEEeecCCcccCCCCCCC-CCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEE
Q 038165 333 EWEGAKRVSLMGNGIESLSEIPTC-PRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHL 410 (731)
Q Consensus 333 ~~~~l~~l~l~~~~~~~l~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L 410 (731)
+..+++.+++..|.+..+|.+... .+|+.|++.+|.++.+....+..++.||+|||+.| .+.++|. +|..-.++++|
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEE
Confidence 344555566666666665555333 33666666666555555555555566666666665 5555442 23333455666
Q ss_pred eccCCCCCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhc
Q 038165 411 DLSSADITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELL 489 (731)
Q Consensus 411 ~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 489 (731)
+|++|.|+.+-. .+..|.+|-+|.|++| .++.+|...+.+|++|+.|++..|.+.-. ....+..|.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iriv------------e~ltFqgL~ 245 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIV------------EGLTFQGLP 245 (873)
T ss_pred eeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeee------------hhhhhcCch
Confidence 666655555432 2445555555555555 45555555455555555555555544310 011222223
Q ss_pred cCCC---------------------CcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEe
Q 038165 490 GLKR---------------------LNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELD 548 (731)
Q Consensus 490 ~L~~---------------------L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 548 (731)
+|++ ++.+++..+....... ...--.+.|+.|+++.|......+...+..++|+.|+
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD 323 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc--ccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence 3322 2333333222221111 0001124555566666555555555555566666666
Q ss_pred ccCCCccceeecCccccccccccccCCccEEEEeccCCC--CCchhhccCCccEEeeecccccccccccccccccccccC
Q 038165 549 LEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRGK--DLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIG 626 (731)
Q Consensus 549 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~--~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~ 626 (731)
++.|.+.+++...+.. +..|+.|.|+.|... .-..+..+.+|+.|+|+++.- .-.+. +- .
T Consensus 324 Ls~N~i~~l~~~sf~~--------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l-s~~IE--------Da-a 385 (873)
T KOG4194|consen 324 LSSNRITRLDEGSFRV--------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL-SWCIE--------DA-A 385 (873)
T ss_pred ccccccccCChhHHHH--------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE-EEEEe--------cc-h
Confidence 6666666654444332 566666666666651 122344677777777766532 11111 00 2
Q ss_pred CCCccCcCccEeeccccccccccCCC-CcCCCCccEEeeccccCCCCCCCCCCCCCCcceEEe
Q 038165 627 SERNFFAQLESLSVWRGINLKSVYPN-PLPFPKLKKIEVRECRQLKKLPLNSSSAKERRVVIE 688 (731)
Q Consensus 627 ~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~lp~L~~L~l~~C~~L~~lP~~~~~~~L~~l~i~ 688 (731)
..+.++++|++|.|.+ +++++++.. ...|++||+|++.+.+--.--|..+.++.|+++.+.
T Consensus 386 ~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhc
Confidence 3567899999999998 689999875 456999999999886654444556666667777664
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.3e-21 Score=197.00 Aligned_cols=315 Identities=19% Similarity=0.236 Sum_probs=221.5
Q ss_pred ccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEe
Q 038165 335 EGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLD 411 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~ 411 (731)
...+.+++++|.+..+. .|.++++|+.+.+..|.++.+|.. .....+|+.|+|.+| .+.++ .+++..++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLRHN-LISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeeecc-ccccccHHHHHhHhhhhhhh
Confidence 36788999999998864 469999999999999999999873 344566999999999 66665 34678899999999
Q ss_pred ccCCCCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhcc
Q 038165 412 LSSADITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLG 490 (731)
Q Consensus 412 L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 490 (731)
|+.|.|.++|.. +..-.++++|+|++| .++.+..+.+..+.+|-+|.++.|.++.++ ...+..|+.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp------------~r~Fk~L~~ 222 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLP------------QRSFKRLPK 222 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccC------------HHHhhhcch
Confidence 999999998754 445578999999999 778888777999999999999999998653 233333444
Q ss_pred CCCCcEEEEEeec-----hhHHHhhhCCchh-----------------hccceEEEEeecCCCCcccccccccCCccEEe
Q 038165 491 LKRLNVLSWTFRS-----SLAVQKFLKYPKL-----------------VSITQSVWVYQCESAPFNVLHLAYMENLQELD 548 (731)
Q Consensus 491 L~~L~~l~~~~~~-----~~~~~~l~~~~~~-----------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 548 (731)
|+.| ++..+. ....+.+.++..+ ...++.|++..|.........+-+++.|+.|+
T Consensus 223 L~~L---dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 223 LESL---DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred hhhh---hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 4444 333221 1122222211111 24556666666665455555567778888888
Q ss_pred ccCCCccceeecCccccccccccccCCccEEEEeccCC--CCCchhhccCCccEEeeecccccccccccccccccccccC
Q 038165 549 LEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIG 626 (731)
Q Consensus 549 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~ 626 (731)
++.|.+..+.++.- +..++|+.|+|++|.. -....+..|..|+.|.|+.+ .+..+. .
T Consensus 300 lS~NaI~rih~d~W--------sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~------------e 358 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSW--------SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLA------------E 358 (873)
T ss_pred cchhhhheeecchh--------hhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHH------------h
Confidence 88887777543321 2367888888888887 44556778888888888776 344432 2
Q ss_pred CCCccCcCccEeeccccccccccCC----CCcCCCCccEEeeccccCCCCCCC-CCCCCC-CcceEEecc
Q 038165 627 SERNFFAQLESLSVWRGINLKSVYP----NPLPFPKLKKIEVRECRQLKKLPL-NSSSAK-ERRVVIEGS 690 (731)
Q Consensus 627 ~~~~~~~~L~~L~L~~~~~L~~l~~----~~~~lp~L~~L~l~~C~~L~~lP~-~~~~~~-L~~l~i~~~ 690 (731)
..+.++++|++|+|++. .+..... ....+|+|+.|.+.| .+|+++|. .+.... |+.+++.+.
T Consensus 359 ~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 36778899999999873 3332221 223489999999988 78999987 333333 777777654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=3.2e-20 Score=181.86 Aligned_cols=312 Identities=24% Similarity=0.278 Sum_probs=188.7
Q ss_pred ccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCC
Q 038165 329 PKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLH 408 (731)
Q Consensus 329 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~ 408 (731)
+...+++++..+.++.|++..+|.|+.|..|..|++..|.+.-+|....+++++|.+|||++| .+++.|..++.+.+|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLE 278 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhh
Confidence 456667788888888888888888888888888888888888888777778888888888888 8888888888888888
Q ss_pred EEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCC--CcEEEe--eCcccCCCchhhhhhhhcCCcccc
Q 038165 409 HLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSN--LEVLRL--RGCGCCSVTEEEEANVLCADAEPL 484 (731)
Q Consensus 409 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~--L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~ 484 (731)
+||+++|.|+.+|.++++| +|+.|-+.|| -+..+-.+++++-+. |++|.= ..-+.... +.+...........
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s--e~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS--EGGTETAMTLPSES 354 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCC--cccccccCCCCCCc
Confidence 8888888888888888888 8888888887 334333332221110 111110 00000000 00000000000111
Q ss_pred hhhhccCCCCcEEEEEee-----chhHHH------------------hhhCCchhhccc-eEEEEeecCCCCcccccccc
Q 038165 485 MKELLGLKRLNVLSWTFR-----SSLAVQ------------------KFLKYPKLVSIT-QSVWVYQCESAPFNVLHLAY 540 (731)
Q Consensus 485 i~~l~~L~~L~~l~~~~~-----~~~~~~------------------~l~~~~~~~~~L-~~L~l~~~~~~~~~~~~l~~ 540 (731)
......+.+.+.+++... .....+ +++.-......+ ..+.++++ ..+..+..++.
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn-~isfv~~~l~~ 433 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN-KISFVPLELSQ 433 (565)
T ss_pred ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC-ccccchHHHHh
Confidence 111111112222221110 001011 111100000111 11122222 23444445677
Q ss_pred cCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-CCCchhhccCCccEEeeeccccccccccccccc
Q 038165 541 MENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLR 619 (731)
Q Consensus 541 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~ 619 (731)
+++|..|++++|....+|.+... +..|+.|+++.|.+ ..|..+..+..|+.+-.+++ .+..+
T Consensus 434 l~kLt~L~L~NN~Ln~LP~e~~~---------lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~n-qi~~v------- 496 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLNDLPEEMGS---------LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNN-QIGSV------- 496 (565)
T ss_pred hhcceeeecccchhhhcchhhhh---------hhhhheecccccccccchHHHhhHHHHHHHHhccc-ccccc-------
Confidence 77888888888877777666543 56688888888877 66666666666666555543 33333
Q ss_pred ccccccCCCCccCcCccEeeccccccccccCCCCcCCCCccEEeeccccC
Q 038165 620 DISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECRQ 669 (731)
Q Consensus 620 ~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~ 669 (731)
.|+.++++.+|.+|++.+ +.++.+|...+++.+|++|+++|.|-
T Consensus 497 -----d~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 497 -----DPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred -----ChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 144688999999999977 68999999999999999999999763
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=8.3e-19 Score=172.06 Aligned_cols=259 Identities=19% Similarity=0.223 Sum_probs=123.3
Q ss_pred eEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeeccccc
Q 038165 360 VTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAF 439 (731)
Q Consensus 360 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 439 (731)
..+.+++|.+..+.+. +.++..|.+|+++++ .+.++|++|+.+..++.|+.+++++.++|+.++.+.+|++|+.+.+
T Consensus 48 ~~lils~N~l~~l~~d-l~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n- 124 (565)
T KOG0472|consen 48 QKLILSHNDLEVLRED-LKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN- 124 (565)
T ss_pred hhhhhccCchhhccHh-hhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-
Confidence 3444444444444444 445555555555555 5555555555555555555555555555555555555555555555
Q ss_pred ccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhcc
Q 038165 440 NLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSI 519 (731)
Q Consensus 440 ~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~ 519 (731)
.+..+|++ ++.+..|+.|+..+|.+.+. +..+..+.++..|...+... .+++...-..+.
T Consensus 125 ~~~el~~~-i~~~~~l~dl~~~~N~i~sl-------------p~~~~~~~~l~~l~~~~n~l------~~l~~~~i~m~~ 184 (565)
T KOG0472|consen 125 ELKELPDS-IGRLLDLEDLDATNNQISSL-------------PEDMVNLSKLSKLDLEGNKL------KALPENHIAMKR 184 (565)
T ss_pred ceeecCch-HHHHhhhhhhhccccccccC-------------chHHHHHHHHHHhhccccch------hhCCHHHHHHHH
Confidence 34444444 55555555555555555433 23333333332221111110 000000000112
Q ss_pred ceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-CCCchhh-ccCC
Q 038165 520 TQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLV-FVQN 597 (731)
Q Consensus 520 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~-~l~~ 597 (731)
|+.|+...+. .+..|..++.+.+|.-|++..|.+..+| ++. .++.|++|++..+.. ..+.... ++++
T Consensus 185 L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~---------gcs~L~Elh~g~N~i~~lpae~~~~L~~ 253 (565)
T KOG0472|consen 185 LKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRFLP-EFP---------GCSLLKELHVGENQIEMLPAEHLKHLNS 253 (565)
T ss_pred HHhcccchhh-hhcCChhhcchhhhHHHHhhhcccccCC-CCC---------ccHHHHHHHhcccHHHhhHHHHhccccc
Confidence 2222221111 1333444556666666666666655543 332 255666666666555 3333333 5666
Q ss_pred ccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCCcCCCCccEEeecccc
Q 038165 598 LKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECR 668 (731)
Q Consensus 598 L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~ 668 (731)
|..|+++++ +++++ |..+.-+.+|++|++++ +.+..+|...+++ .|+.|.+.|.|
T Consensus 254 l~vLDLRdN-klke~-------------Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 254 LLVLDLRDN-KLKEV-------------PDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ceeeecccc-ccccC-------------chHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence 666666554 34444 44555566666666655 3555555555555 55555555543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=5.7e-15 Score=165.08 Aligned_cols=131 Identities=24% Similarity=0.193 Sum_probs=67.9
Q ss_pred EEEEcCCccccCccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCc
Q 038165 317 FLVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLST 396 (731)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 396 (731)
.+......+..+|..- ..+++.|.+.+|.+..+|.. +++|++|++++|.++.+|.. .++|+.|++++| .+..
T Consensus 205 ~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTH 276 (788)
T ss_pred EEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-chhh
Confidence 3333344444444321 13556666666666655543 35666666666665555531 345666666666 5555
Q ss_pred ccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 397 LPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 397 lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
+|... .+|+.|++++|+++.+|.. +++|+.|++++| .+..+|.. ..+|+.|++++|.+.
T Consensus 277 Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 277 LPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLT 335 (788)
T ss_pred hhhch---hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCccc
Confidence 55422 3455666666666666542 345666666665 45555541 123555555555443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=1.6e-16 Score=171.93 Aligned_cols=270 Identities=21% Similarity=0.229 Sum_probs=182.2
Q ss_pred CCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEee
Q 038165 355 TCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLN 434 (731)
Q Consensus 355 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 434 (731)
.-++|+.|..+.|.+..+... ....+|++++++.+ .+..+|+.++.+.+|+.++..+|++..+|..+...++|+.|.
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLS 293 (1081)
T ss_pred cCcchheeeeccCcceeeccc--cccccceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHH
Confidence 346777788888876644332 23568999999999 899999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCc
Q 038165 435 LEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYP 514 (731)
Q Consensus 435 L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~ 514 (731)
+.+| .+..+|+. .+++++|++|++..|.+...++.... -+.. .|+.++.......... ....
T Consensus 294 ~~~n-el~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~------------v~~~--~l~~ln~s~n~l~~lp--~~~e 355 (1081)
T KOG0618|consen 294 AAYN-ELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLA------------VLNA--SLNTLNVSSNKLSTLP--SYEE 355 (1081)
T ss_pred hhhh-hhhhCCCc-ccccceeeeeeehhccccccchHHHh------------hhhH--HHHHHhhhhccccccc--cccc
Confidence 9999 78889986 77799999999999988765421110 0000 0111111111000000 0011
Q ss_pred hhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-CCCchhh
Q 038165 515 KLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLV 593 (731)
Q Consensus 515 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~ 593 (731)
.....|+.|.+.+|...+.-...+.++.+|+.|++++|.+..+|...+.. ++.|+.|+|+||.. ..+..+.
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k--------le~LeeL~LSGNkL~~Lp~tva 427 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK--------LEELEELNLSGNKLTTLPDTVA 427 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc--------hHHhHHHhcccchhhhhhHHHH
Confidence 12245667777777666666666777888888888888777766555443 77778888888887 6667777
Q ss_pred ccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCCcC-CCCccEEeeccccC
Q 038165 594 FVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLP-FPKLKKIEVRECRQ 669 (731)
Q Consensus 594 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~-lp~L~~L~l~~C~~ 669 (731)
.++.|++|...++ .+... | .+..+++|+.++++ |++|..+...... -|+|++|+++|.+.
T Consensus 428 ~~~~L~tL~ahsN-~l~~f-------------P-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSN-QLLSF-------------P-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhHHHhhcCC-ceeec-------------h-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 7778887777554 23333 3 45677778888874 3566654432222 26788888877664
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=4.4e-14 Score=158.04 Aligned_cols=256 Identities=21% Similarity=0.181 Sum_probs=185.4
Q ss_pred cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCC
Q 038165 336 GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSA 415 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~ 415 (731)
+-..+++..+.+..+|... .++|+.|.+.+|.++.+|.. +++|++|++++| .++.+|.. ..+|++|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 4567889999998887632 25899999999999988863 689999999999 88899864 468999999999
Q ss_pred CCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCc
Q 038165 416 DITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLN 495 (731)
Q Consensus 416 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~ 495 (731)
.++.+|.. ..+|+.|++++| .++.+|.. +++|+.|++++|.+.++ +... .+|..|
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~~L-------------p~lp---~~L~~L- 327 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASL-------------PALP---SELCKL- 327 (788)
T ss_pred chhhhhhc---hhhcCEEECcCC-cccccccc----ccccceeECCCCccccC-------------CCCc---cccccc-
Confidence 99998864 367889999999 78888862 57899999999988754 2211 123333
Q ss_pred EEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCC
Q 038165 496 VLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRS 575 (731)
Q Consensus 496 ~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 575 (731)
.+..+... .+ +.+..+|+.|++++|....... ..++|+.|++++|.+..+|. .+.+
T Consensus 328 --~Ls~N~L~---~L---P~lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP~------------l~~~ 383 (788)
T PRK15387 328 --WAYNNQLT---SL---PTLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA------------LPSG 383 (788)
T ss_pred --ccccCccc---cc---cccccccceEecCCCccCCCCC----CCcccceehhhccccccCcc------------cccc
Confidence 22222211 12 2233578899999887444322 13578888998888776532 1357
Q ss_pred ccEEEEeccCCCCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCCcC
Q 038165 576 LNTVVLRSCRGKDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLP 655 (731)
Q Consensus 576 L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~ 655 (731)
|+.|++++|....++.+ .++|+.|++++|. +..+ |. .+.+|+.|++++ +++..+|.....
T Consensus 384 L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~-LssI-------------P~---l~~~L~~L~Ls~-NqLt~LP~sl~~ 443 (788)
T PRK15387 384 LKELIVSGNRLTSLPVL--PSELKELMVSGNR-LTSL-------------PM---LPSGLLSLSVYR-NQLTRLPESLIH 443 (788)
T ss_pred cceEEecCCcccCCCCc--ccCCCEEEccCCc-CCCC-------------Cc---chhhhhhhhhcc-CcccccChHHhh
Confidence 89999999888333322 3689999999874 4444 32 245788899988 468889888888
Q ss_pred CCCccEEeeccccC
Q 038165 656 FPKLKKIEVRECRQ 669 (731)
Q Consensus 656 lp~L~~L~l~~C~~ 669 (731)
+++|+.|++++++-
T Consensus 444 L~~L~~LdLs~N~L 457 (788)
T PRK15387 444 LSSETTVNLEGNPL 457 (788)
T ss_pred ccCCCeEECCCCCC
Confidence 99999999998763
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=2.7e-14 Score=160.78 Aligned_cols=120 Identities=20% Similarity=0.390 Sum_probs=90.8
Q ss_pred cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCC
Q 038165 336 GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSA 415 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~ 415 (731)
+...+.+.++++..+|.. -.++|+.|++++|.++.+|...+ .+|++|++++| .++.+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 445677777777777652 13578888888888888887643 57889999888 7888887664 47888999998
Q ss_pred CCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCC
Q 038165 416 DITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 416 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
++..+|..+. .+|+.|++++| .++.+|.. +. ++|+.|++++|.+..+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTL 298 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccC
Confidence 8888887764 57888999877 67788875 32 5788899888876643
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=2.7e-14 Score=160.81 Aligned_cols=137 Identities=26% Similarity=0.355 Sum_probs=109.2
Q ss_pred EEEcCCccccCccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc
Q 038165 318 LVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL 397 (731)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l 397 (731)
+...+..+..+|..- .+.++.+++.+|.+..+|... .++|++|++++|.++.+|..+ ..+|+.|+|++| .+..+
T Consensus 183 L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~L~~L 256 (754)
T PRK15370 183 LRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-RITEL 256 (754)
T ss_pred EEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCC-ccCcC
Confidence 444444555565421 257999999999999887643 369999999999999998764 357999999999 88899
Q ss_pred cccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCC
Q 038165 398 PSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 398 P~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
|..+. .+|++|++++|+++.+|..+. .+|++|++++| .++.+|.. + .++|+.|++++|.+..+
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred ChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCccccC
Confidence 98875 589999999999999998764 58999999999 78888875 3 25789999999877643
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-15 Score=165.34 Aligned_cols=287 Identities=18% Similarity=0.220 Sum_probs=210.9
Q ss_pred ccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccC
Q 038165 335 EGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSS 414 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~ 414 (731)
..++++..+.|.+..+..-+...+|++++++.+.++.+| ++++.+.+|..|...+| .+..+|..+....+|++|.+.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhh
Confidence 467788888887776666677889999999999999999 77999999999999999 8899999999999999999999
Q ss_pred CCCCCcchHHhcCCcCcEeecccccccccccccccCCCCC-CcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCC
Q 038165 415 ADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSN-LEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKR 493 (731)
Q Consensus 415 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~ 493 (731)
|.++.+|.....++.|++|+|..| .+..+|+..+..+.. |+.|+.+.+.+...+ ...-.....|+.
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp------------~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLP------------SYEENNHAALQE 363 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccc------------cccchhhHHHHH
Confidence 999999999999999999999999 889999875555544 777777776655332 000011112222
Q ss_pred CcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCcccccccccccc
Q 038165 494 LNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGF 573 (731)
Q Consensus 494 L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 573 (731)
|..-+.... ......+.. ..+|+.|++++|.........+.+++.|++|+++||.+..+|.... .+
T Consensus 364 LylanN~Lt-d~c~p~l~~----~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva---------~~ 429 (1081)
T KOG0618|consen 364 LYLANNHLT-DSCFPVLVN----FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVA---------NL 429 (1081)
T ss_pred HHHhcCccc-ccchhhhcc----ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHH---------hh
Confidence 222121111 112222222 2489999999997666777779999999999999999999875553 38
Q ss_pred CCccEEEEeccCCCCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCC
Q 038165 574 RSLNTVVLRSCRGKDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNP 653 (731)
Q Consensus 574 ~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~ 653 (731)
..|++|...+|.....|-+.+++.|+.++|+.+ ++..+.. |..... |+|++|++++..++. ...
T Consensus 430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l-----------~~~~p~-p~LkyLdlSGN~~l~---~d~ 493 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTL-----------PEALPS-PNLKYLDLSGNTRLV---FDH 493 (1081)
T ss_pred hhhHHHhhcCCceeechhhhhcCcceEEecccc-hhhhhhh-----------hhhCCC-cccceeeccCCcccc---cch
Confidence 899999998888855558999999999999754 5665533 222222 899999999976532 233
Q ss_pred cCCCCccEEeecc
Q 038165 654 LPFPKLKKIEVRE 666 (731)
Q Consensus 654 ~~lp~L~~L~l~~ 666 (731)
..|+.++.+...+
T Consensus 494 ~~l~~l~~l~~~~ 506 (1081)
T KOG0618|consen 494 KTLKVLKSLSQMD 506 (1081)
T ss_pred hhhHHhhhhhhee
Confidence 3455555554433
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=3.9e-15 Score=129.63 Aligned_cols=154 Identities=27% Similarity=0.445 Sum_probs=129.7
Q ss_pred cccCccccccccceEEEeecCCcccC-CCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccC
Q 038165 325 LTEAPKIEEWEGAKRVSLMGNGIESL-SEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISS 403 (731)
Q Consensus 325 ~~~~~~~~~~~~l~~l~l~~~~~~~l-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~ 403 (731)
+..++.+-.++.+.++.++.|++..+ |.+..+.+|++|.+.+|++.++|.+ ++.++.||.|++.-| .+..+|..|+.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence 34566677778899999999998876 4568899999999999999999988 888999999999988 88899999999
Q ss_pred CcCCCEEeccCCCCCC--cchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCc
Q 038165 404 LVSLHHLDLSSADITG--LPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADA 481 (731)
Q Consensus 404 l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 481 (731)
++.|+.|||.+|++.+ +|-.+..++.|+.|++++| ....+|.+ ++++++|+.|.+..|...+.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~l------------- 165 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLSL------------- 165 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhhC-------------
Confidence 9999999999997766 8988888999999999998 66888888 89999999999999887755
Q ss_pred ccchhhhccCCCCc
Q 038165 482 EPLMKELLGLKRLN 495 (731)
Q Consensus 482 ~~~i~~l~~L~~L~ 495 (731)
+..++.+..|+.|+
T Consensus 166 pkeig~lt~lrelh 179 (264)
T KOG0617|consen 166 PKEIGDLTRLRELH 179 (264)
T ss_pred cHHHHHHHHHHHHh
Confidence 45566666555554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=7.5e-15 Score=127.89 Aligned_cols=111 Identities=24% Similarity=0.374 Sum_probs=54.6
Q ss_pred CCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCc
Q 038165 350 LSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEK 429 (731)
Q Consensus 350 l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~ 429 (731)
++.+..+.++..|.+++|.++.+|+. +..+.+|++|++++| .++++|.+|+.++.|+.|++.-|++..+|.+++.++-
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 34444555555555555555555554 444555555555555 5555555555555555555555555555555555555
Q ss_pred CcEeeccccccc-ccccccccCCCCCCcEEEeeCc
Q 038165 430 LRYLNLEYAFNL-SIIPHQLISGFSNLEVLRLRGC 463 (731)
Q Consensus 430 L~~L~L~~~~~l-~~lp~~~i~~l~~L~~L~l~~~ 463 (731)
|+.||+.+|..- ..+|.. +-.|+.|+.|++++|
T Consensus 104 levldltynnl~e~~lpgn-ff~m~tlralyl~dn 137 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDN 137 (264)
T ss_pred hhhhhccccccccccCCcc-hhHHHHHHHHHhcCC
Confidence 555555544111 123433 334444444444444
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=6.9e-14 Score=137.76 Aligned_cols=267 Identities=19% Similarity=0.192 Sum_probs=156.3
Q ss_pred cceEEEeecCCcccCCC--CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccccc-ccCCcCCCEEec
Q 038165 336 GAKRVSLMGNGIESLSE--IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSG-ISSLVSLHHLDL 412 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~l~~L~~L~L 412 (731)
....|.+..|.|+.+|. |..+++||.|++++|.++.|.+..|.+++.|..|-+-+++.++++|.. |++|..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 45566666777776653 566777777777777777776666777766666665553366666653 566667777776
Q ss_pred cCCCCCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccC
Q 038165 413 SSADITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGL 491 (731)
Q Consensus 413 ~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L 491 (731)
.-+++..++. .+..|++|..|.+-.| .+..++.+.+..+.+++++++..+.... ..+|
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic--------------------dCnL 206 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC--------------------DCNL 206 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc--------------------cccc
Confidence 6666666443 3566677777776666 5566666556666667766665543210 0111
Q ss_pred CCCc----EEEEEe--echh-----HHHhhh--CCchhhccceEE---EEeec-CCCCcccccccccCCccEEeccCCCc
Q 038165 492 KRLN----VLSWTF--RSSL-----AVQKFL--KYPKLVSITQSV---WVYQC-ESAPFNVLHLAYMENLQELDLEYCNL 554 (731)
Q Consensus 492 ~~L~----~l~~~~--~~~~-----~~~~l~--~~~~~~~~L~~L---~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~ 554 (731)
+.+. ...+.. ..+. ...... ....+..+++.+ -...| .....+..-+..+++|+.|++++|.+
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 1110 000000 0000 000000 000111111111 11112 11122222388899999999999999
Q ss_pred cceeecCccccccccccccCCccEEEEeccCC--CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccC
Q 038165 555 EEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFF 632 (731)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 632 (731)
..+...++.. ...+++|+|..|+. ..-..+..+..|+.|+|.++ .++.+. |..+..+
T Consensus 287 ~~i~~~aFe~--------~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~------------~~aF~~~ 345 (498)
T KOG4237|consen 287 TRIEDGAFEG--------AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVA------------PGAFQTL 345 (498)
T ss_pred chhhhhhhcc--------hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEe------------ccccccc
Confidence 9877777654 78899999999888 33345668899999999887 344432 4577788
Q ss_pred cCccEeeccccc
Q 038165 633 AQLESLSVWRGI 644 (731)
Q Consensus 633 ~~L~~L~L~~~~ 644 (731)
.+|.+|.+-..|
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 888888876533
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=1.6e-13 Score=135.30 Aligned_cols=272 Identities=21% Similarity=0.254 Sum_probs=170.6
Q ss_pred CCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccC-CCCCCcchH-HhcCCcCcEe
Q 038165 357 PRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSS-ADITGLPQE-LKALEKLRYL 433 (731)
Q Consensus 357 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~-~~l~~lp~~-i~~L~~L~~L 433 (731)
+.-..+.+..|.++.+|++.|+.+++||.|||++| .++.+ |..|..+..|-.|-+.+ |+|+.+|.+ ++.|..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 45678899999999999999999999999999999 67665 88999999998888877 799999986 7889999999
Q ss_pred ecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEe-ech--hHHHhh
Q 038165 434 NLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTF-RSS--LAVQKF 510 (731)
Q Consensus 434 ~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~-~~~--~~~~~l 510 (731)
.+.-| .+..++.+++..|++|..|.++++.+..+. ...+..+..++.+..-...+ +.+ ......
T Consensus 146 llNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~------------~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 146 LLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSIC------------KGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hcChh-hhcchhHHHHHHhhhcchhcccchhhhhhc------------cccccchhccchHhhhcCccccccccchhhhH
Confidence 99888 678888888999999999999998766331 22344444444443222221 110 000000
Q ss_pred hCC-c---hhhccceEEEEeecCCCCcccccccccCCccEE----eccCCCccceeecCccccccccccccCCccEEEEe
Q 038165 511 LKY-P---KLVSITQSVWVYQCESAPFNVLHLAYMENLQEL----DLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLR 582 (731)
Q Consensus 511 ~~~-~---~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L----~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 582 (731)
... + .-.+......+.+..........+. .+++.+ .-........|..++ ..+++|++|+|+
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~--c~~esl~s~~~~~d~~d~~cP~~cf--------~~L~~L~~lnls 282 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFL--CSLESLPSRLSSEDFPDSICPAKCF--------KKLPNLRKLNLS 282 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhh--hhHHhHHHhhccccCcCCcChHHHH--------hhcccceEeccC
Confidence 000 0 0000000001111110000000010 111111 111111222222222 348899999999
Q ss_pred ccCC--CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCC-CCcCCCCc
Q 038165 583 SCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYP-NPLPFPKL 659 (731)
Q Consensus 583 ~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-~~~~lp~L 659 (731)
+|.. ....|+..+..|+.|.|..+ +++.+- ...+.++..|+.|.|++ +++..+.. ....+.+|
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~------------~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRN-KLEFVS------------SGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSL 348 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcc-hHHHHH------------HHhhhccccceeeeecC-CeeEEEeccccccccee
Confidence 9988 55678888999999999876 455442 23677888999999988 46665543 33445666
Q ss_pred cEEeecc
Q 038165 660 KKIEVRE 666 (731)
Q Consensus 660 ~~L~l~~ 666 (731)
.+|.+-.
T Consensus 349 ~~l~l~~ 355 (498)
T KOG4237|consen 349 STLNLLS 355 (498)
T ss_pred eeeehcc
Confidence 6776644
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=5.2e-12 Score=132.08 Aligned_cols=82 Identities=27% Similarity=0.293 Sum_probs=38.0
Q ss_pred CCCCeeEEEcccCCccc-----cChhhhcCCCCccEEEcCCCCCCCc-------ccccccCCcCCCEEeccCCCCCC-cc
Q 038165 355 TCPRLVTLLVDENPIVE-----ITDGFFQSMSSLRVLSLSENFHLST-------LPSGISSLVSLHHLDLSSADITG-LP 421 (731)
Q Consensus 355 ~~~~L~~L~l~~~~l~~-----~~~~~~~~l~~L~~L~L~~~~~~~~-------lP~~i~~l~~L~~L~L~~~~l~~-lp 421 (731)
.+.+|+.|.+.++.++. ++. .+...++|+.|+++++ .+.. ++..+..+++|++|++++|.+.. .+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 34445566665555421 111 1334455556655555 2221 22334445555555555554442 33
Q ss_pred hHHhcCCc---CcEeecccc
Q 038165 422 QELKALEK---LRYLNLEYA 438 (731)
Q Consensus 422 ~~i~~L~~---L~~L~L~~~ 438 (731)
..+..+.+ |++|++++|
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHHHHHhccCcccEEEeeCC
Confidence 33333333 555555555
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=4.3e-11 Score=125.17 Aligned_cols=231 Identities=22% Similarity=0.158 Sum_probs=137.1
Q ss_pred ccceEEEeecCCccc-----CC-CCCCCCCeeEEEcccCCccccC------hhhhcCCCCccEEEcCCCCCCCccccccc
Q 038165 335 EGAKRVSLMGNGIES-----LS-EIPTCPRLVTLLVDENPIVEIT------DGFFQSMSSLRVLSLSENFHLSTLPSGIS 402 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~-----l~-~~~~~~~L~~L~l~~~~l~~~~------~~~~~~l~~L~~L~L~~~~~~~~lP~~i~ 402 (731)
..++.+.+.++.+.. ++ .+...++++.+.+.++.+...+ ...+..+++|++|++++|......+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 457888888887743 22 3467778999999888765211 23467788999999999933334555555
Q ss_pred CCcC---CCEEeccCCCCCC-----cchHHhcC-CcCcEeecccccccc-----cccccccCCCCCCcEEEeeCcccCCC
Q 038165 403 SLVS---LHHLDLSSADITG-----LPQELKAL-EKLRYLNLEYAFNLS-----IIPHQLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 403 ~l~~---L~~L~L~~~~l~~-----lp~~i~~L-~~L~~L~L~~~~~l~-----~lp~~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
.+.+ |++|++++|.+.. +...+..+ ++|+.|++++|. ++ .++.. +..+++|++|++.+|.+.+.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCCCCchH
Confidence 5555 9999999998773 44556677 899999999994 33 23333 66778899999998876521
Q ss_pred chhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcc----cccccccCCc
Q 038165 469 TEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFN----VLHLAYMENL 544 (731)
Q Consensus 469 ~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L 544 (731)
........+..++.|+.+++ ++|...+.. ...+..+++|
T Consensus 181 -----------~~~~l~~~l~~~~~L~~L~L--------------------------~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 181 -----------GIRALAEGLKANCNLEVLDL--------------------------NNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred -----------HHHHHHHHHHhCCCCCEEec--------------------------cCCccChHHHHHHHHHhcccCCC
Confidence 00111222333344444444 333211111 1124455677
Q ss_pred cEEeccCCCccceeecCccccccccccccCCccEEEEeccCCC--C----CchhhccCCccEEeeeccc
Q 038165 545 QELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRGK--D----LTWLVFVQNLKVLYIGFCG 607 (731)
Q Consensus 545 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~--~----~~~l~~l~~L~~L~L~~~~ 607 (731)
++|++++|.+....+..... .+. ...+.|++|++++|... . ...+..+++|++|+++++.
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~--~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALAS--ALL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CEEecCCCcCchHHHHHHHH--HHh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 77777777665411111000 000 01367777777777652 1 1233455677888877764
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=7.9e-10 Score=101.69 Aligned_cols=118 Identities=31% Similarity=0.471 Sum_probs=38.7
Q ss_pred cCCcccCCCCCCCCCeeEEEcccCCccccChhhhc-CCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcch
Q 038165 344 GNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQ-SMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQ 422 (731)
Q Consensus 344 ~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~ 422 (731)
.+.++..+.+.++.+++.|++.+|.+..+.. ++ .+.+|++|++++| .++.++ .+..+++|++|++++|.|+.++.
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 3445556666667777888888887766643 43 4678888888888 777776 57778888888888888888876
Q ss_pred HHh-cCCcCcEeecccccccccccc-cccCCCCCCcEEEeeCcccC
Q 038165 423 ELK-ALEKLRYLNLEYAFNLSIIPH-QLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 423 ~i~-~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 466 (731)
.+. .+++|+.|++++| .+..+.. ..+..+++|++|++.+|.+.
T Consensus 82 ~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 653 6888888888887 4444332 12667888888888888766
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.8e-10 Score=112.63 Aligned_cols=87 Identities=24% Similarity=0.250 Sum_probs=46.2
Q ss_pred CCCCccEEEcCCCCCCCcccc--cccCCcCCCEEeccCCCCCC---cchHHhcCCcCcEeecccccccccccccccCCCC
Q 038165 379 SMSSLRVLSLSENFHLSTLPS--GISSLVSLHHLDLSSADITG---LPQELKALEKLRYLNLEYAFNLSIIPHQLISGFS 453 (731)
Q Consensus 379 ~l~~L~~L~L~~~~~~~~lP~--~i~~l~~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~ 453 (731)
++++|+...|.++ .+...+. ....+++++.|||++|-+.. +-.-...|++|+.|+++.|...--.....-..++
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4556666666666 5554442 44556666666666664433 2233455666666666666322211111122455
Q ss_pred CCcEEEeeCcccC
Q 038165 454 NLEVLRLRGCGCC 466 (731)
Q Consensus 454 ~L~~L~l~~~~~~ 466 (731)
.|+.|.++.|+++
T Consensus 198 ~lK~L~l~~CGls 210 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS 210 (505)
T ss_pred hhheEEeccCCCC
Confidence 6666666666554
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=3.4e-09 Score=97.49 Aligned_cols=130 Identities=27% Similarity=0.379 Sum_probs=54.9
Q ss_pred cccccccceEEEeecCCcccCCCCC-CCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccc-cCCcCC
Q 038165 330 KIEEWEGAKRVSLMGNGIESLSEIP-TCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGI-SSLVSL 407 (731)
Q Consensus 330 ~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i-~~l~~L 407 (731)
...+..+.+.+++.++.+..+..+. .+.+|++|++++|.++.+.. +..+++|++|++++| .++++++.+ ..+++|
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcC
Confidence 3334457899999999999998886 68999999999999988875 778999999999999 888887655 368999
Q ss_pred CEEeccCCCCCCcc--hHHhcCCcCcEeecccccccccccc---cccCCCCCCcEEEeeCc
Q 038165 408 HHLDLSSADITGLP--QELKALEKLRYLNLEYAFNLSIIPH---QLISGFSNLEVLRLRGC 463 (731)
Q Consensus 408 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~~i~~l~~L~~L~l~~~ 463 (731)
++|++++|+|..+- ..+..+++|+.|++.+|.. ...+. -++..+|+|+.|+-...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEc
Confidence 99999999887753 3577899999999999843 33332 34678999999987654
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=2.9e-10 Score=117.71 Aligned_cols=107 Identities=28% Similarity=0.347 Sum_probs=79.1
Q ss_pred CCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeec
Q 038165 356 CPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNL 435 (731)
Q Consensus 356 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 435 (731)
+..-...+++.|++..+|.. +..+..|..|.|..| .+..+|..++++..|.||+|+.|++..+|..++.|+ |+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 33345567777777777766 556667777777777 777788888888888888888888888888777765 777777
Q ss_pred ccccccccccccccCCCCCCcEEEeeCcccCC
Q 038165 436 EYAFNLSIIPHQLISGFSNLEVLRLRGCGCCS 467 (731)
Q Consensus 436 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 467 (731)
++| +++.+|.+ ++.+..|.+|+.+.|.+..
T Consensus 151 sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~s 180 (722)
T KOG0532|consen 151 SNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQS 180 (722)
T ss_pred ecC-ccccCCcc-cccchhHHHhhhhhhhhhh
Confidence 777 67778877 7777778888888776653
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.79 E-value=2.4e-10 Score=114.09 Aligned_cols=299 Identities=20% Similarity=0.194 Sum_probs=145.1
Q ss_pred CCeeEEEcccCCcccc--ChhhhcCCCCccEEEcCCCCCCCc--ccccccCCcCCCEEeccCC-CCCC--cchHHhcCCc
Q 038165 357 PRLVTLLVDENPIVEI--TDGFFQSMSSLRVLSLSENFHLST--LPSGISSLVSLHHLDLSSA-DITG--LPQELKALEK 429 (731)
Q Consensus 357 ~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~L~~~~~~~~--lP~~i~~l~~L~~L~L~~~-~l~~--lp~~i~~L~~ 429 (731)
..|+.|.+.|+.-... ...+...++++..|.+.+|..++. +-+--..+.+|++|++..| .++. |-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4577778887762221 123355678888888888854432 1111134667888888775 5555 2222345677
Q ss_pred CcEeeccccccccc--ccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHH
Q 038165 430 LRYLNLEYAFNLSI--IPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAV 507 (731)
Q Consensus 430 L~~L~L~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~ 507 (731)
|++|++++|..++. +-. ...+..+|+.+...+|.-.+ .
T Consensus 218 L~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~---------------------------------------l 257 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELE---------------------------------------L 257 (483)
T ss_pred HHHhhhccCchhhcCcchH-Hhccchhhhhhhhccccccc---------------------------------------H
Confidence 88888888755443 111 13445556666556553221 1
Q ss_pred HhhhCCchhhccceEEEEeecCCCCcccc--cccccCCccEEeccCCCccc-eeecCccccccccccccCCccEEEEecc
Q 038165 508 QKFLKYPKLVSITQSVWVYQCESAPFNVL--HLAYMENLQELDLEYCNLEE-MKIDCPEEVKKLFRNGFRSLNTVVLRSC 584 (731)
Q Consensus 508 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~c 584 (731)
+.+........-+..+++..|........ .-..+..|+.|+.++|.... .+...+. .+.++|+.|.+++|
T Consensus 258 e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg-------~~~~~L~~l~l~~c 330 (483)
T KOG4341|consen 258 EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG-------QHCHNLQVLELSGC 330 (483)
T ss_pred HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh-------cCCCceEEEecccc
Confidence 11111111111122222222221111000 01223455556555554432 1111111 22456666666666
Q ss_pred CC---CCCchhh-ccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeecccccccccc-----CCCCcC
Q 038165 585 RG---KDLTWLV-FVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSV-----YPNPLP 655 (731)
Q Consensus 585 ~~---~~~~~l~-~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l-----~~~~~~ 655 (731)
.. .....++ +.+.|+.|++.+|..+.+- .+ .+...++|.|+.|.+++|.....- .....+
T Consensus 331 ~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-------tL----~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 331 QQFSDRGFTMLGRNCPHLERLDLEECGLITDG-------TL----ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred chhhhhhhhhhhcCChhhhhhcccccceehhh-------hH----hhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 65 2223333 5566666666666443322 00 123345666666666666554433 223344
Q ss_pred CCCccEEeeccccCCCCCCCCC--CCCCCcceEEecch----hhhhhcccCcccccccccCCcccc
Q 038165 656 FPKLKKIEVRECRQLKKLPLNS--SSAKERRVVIEGSK----EWWEELQWEDQATQNAFSPGFSQG 715 (731)
Q Consensus 656 lp~L~~L~l~~C~~L~~lP~~~--~~~~L~~l~i~~~~----~~~~~l~w~~~~~~~~~~~~~~~~ 715 (731)
+..|+.+++.+||.+++--... ....|+.+++.+|. +-.+++.-.-++.+ ++.||.+.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~--v~a~~a~~ 463 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK--VHAYFAPV 463 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce--ehhhccCC
Confidence 5667777777777666533211 11226667777774 33344444455555 56666554
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=3.7e-09 Score=100.99 Aligned_cols=134 Identities=25% Similarity=0.383 Sum_probs=112.6
Q ss_pred cccccccceEEEeecCCcccCCCC-CCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCC
Q 038165 330 KIEEWEGAKRVSLMGNGIESLSEI-PTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLH 408 (731)
Q Consensus 330 ~~~~~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~ 408 (731)
....|..+..+++++|.++.+... .-.|.+|.|++++|.+..+.. +..+++|..|||++| .+.++-..-.+|-|.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 345678899999999999988654 667999999999999877766 778999999999999 7877766666788999
Q ss_pred EEeccCCCCCCcchHHhcCCcCcEeecccccccccccc-cccCCCCCCcEEEeeCcccCCC
Q 038165 409 HLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPH-QLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 409 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
+|+|++|.|+.+. ++++|.+|..||+++| .+..+.. ..|++++.|++|.+.+|.+...
T Consensus 356 tL~La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeehhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9999999999885 8999999999999999 5555431 1289999999999999987754
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=1.8e-08 Score=108.54 Aligned_cols=196 Identities=26% Similarity=0.336 Sum_probs=125.2
Q ss_pred EEEeecCCc-ccCCCCCCCCCeeEEEcccCCccccChhhhcCCC-CccEEEcCCCCCCCcccccccCCcCCCEEeccCCC
Q 038165 339 RVSLMGNGI-ESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMS-SLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSAD 416 (731)
Q Consensus 339 ~l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~ 416 (731)
.+....+.+ .........+.+..|.+.++.+..+++. ...+. +|+.|+++++ .+..+|..++.+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 345555555 4444455567788888888887777764 44453 7888888888 777777777888888888888888
Q ss_pred CCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcE
Q 038165 417 ITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNV 496 (731)
Q Consensus 417 l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~ 496 (731)
+.++|...+.+++|+.|+++++ .+..+|.. ++.+..|++|.+.++..... ...+..+.++..|.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-------------~~~~~~~~~l~~l~- 238 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNSIIEL-------------LSSLSNLKNLSGLE- 238 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCcceec-------------chhhhhcccccccc-
Confidence 8888877777788888888887 67777774 45666688888877743211 22233333332221
Q ss_pred EEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCc
Q 038165 497 LSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSL 576 (731)
Q Consensus 497 l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 576 (731)
+.++.. ...+..+..+++++.|++++|.+..++. . ..+.+|
T Consensus 239 ----------------------------l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~---------~~~~~l 279 (394)
T COG4886 239 ----------------------------LSNNKL-EDLPESIGNLSNLETLDLSNNQISSISS-L---------GSLTNL 279 (394)
T ss_pred ----------------------------cCCcee-eeccchhccccccceecccccccccccc-c---------cccCcc
Confidence 111110 0002346666778888888888777543 1 236788
Q ss_pred cEEEEeccCC-CCCch
Q 038165 577 NTVVLRSCRG-KDLTW 591 (731)
Q Consensus 577 ~~L~L~~c~~-~~~~~ 591 (731)
+.|+++++.. ..++.
T Consensus 280 ~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 280 RELDLSGNSLSNALPL 295 (394)
T ss_pred CEEeccCccccccchh
Confidence 8888888776 44333
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=5.8e-08 Score=104.62 Aligned_cols=193 Identities=25% Similarity=0.342 Sum_probs=140.7
Q ss_pred EEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCc-CCCEEeccCCCCCCcchHHhcCCcCcEeeccccc
Q 038165 361 TLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLV-SLHHLDLSSADITGLPQELKALEKLRYLNLEYAF 439 (731)
Q Consensus 361 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 439 (731)
.+....+.+..-... +..++.+..|++.++ .+.++|...+.+. +|++|+++++.+..+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N- 173 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN- 173 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-
Confidence 577777765333332 455688999999999 9999999888885 999999999999999989999999999999999
Q ss_pred ccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhcc
Q 038165 440 NLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSI 519 (731)
Q Consensus 440 ~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~ 519 (731)
.+..+|.. .+.+++|+.|+++++.+..++ ..++.. ..
T Consensus 174 ~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~-------------~~~~~~-----------------------------~~ 210 (394)
T COG4886 174 DLSDLPKL-LSNLSNLNNLDLSGNKISDLP-------------PEIELL-----------------------------SA 210 (394)
T ss_pred hhhhhhhh-hhhhhhhhheeccCCccccCc-------------hhhhhh-----------------------------hh
Confidence 78999985 558999999999999887542 222111 12
Q ss_pred ceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCCCCCchhhccCCcc
Q 038165 520 TQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLK 599 (731)
Q Consensus 520 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~ 599 (731)
|..+.+.++. .......+.++.++..|.+.++....++ ... ..+++|+.|++++|....++.++.+.+|+
T Consensus 211 L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~-~~~--------~~l~~l~~L~~s~n~i~~i~~~~~~~~l~ 280 (394)
T COG4886 211 LEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLP-ESI--------GNLSNLETLDLSNNQISSISSLGSLTNLR 280 (394)
T ss_pred hhhhhhcCCc-ceecchhhhhcccccccccCCceeeecc-chh--------ccccccceeccccccccccccccccCccC
Confidence 3344444432 1223334666777777777777665531 111 33677999999998885555588899999
Q ss_pred EEeeeccccc
Q 038165 600 VLYIGFCGDM 609 (731)
Q Consensus 600 ~L~L~~~~~l 609 (731)
.|++++....
T Consensus 281 ~L~~s~n~~~ 290 (394)
T COG4886 281 ELDLSGNSLS 290 (394)
T ss_pred EEeccCcccc
Confidence 9999876543
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=7.4e-09 Score=104.27 Aligned_cols=134 Identities=22% Similarity=0.170 Sum_probs=98.5
Q ss_pred cccccceEEEeecCCcccCC---CCCCCCCeeEEEcccCCccccC--hhhhcCCCCccEEEcCCCCCCCccccc--ccCC
Q 038165 332 EEWEGAKRVSLMGNGIESLS---EIPTCPRLVTLLVDENPIVEIT--DGFFQSMSSLRVLSLSENFHLSTLPSG--ISSL 404 (731)
Q Consensus 332 ~~~~~l~~l~l~~~~~~~l~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~~~lP~~--i~~l 404 (731)
.+.+++|.+++.+..+..++ ....|++++.|+++.|-+...- ..+...+++|+.|+|+.| .+...-++ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhh
Confidence 45578999999998887776 4689999999999999765432 345678999999999999 44332211 1367
Q ss_pred cCCCEEeccCCCCCC--cchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCC
Q 038165 405 VSLHHLDLSSADITG--LPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCS 467 (731)
Q Consensus 405 ~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 467 (731)
.+|+.|.|+.|+++. +-.....+++|+.|+|..|..+..-... ..-++.|++|++++|.+..
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID 260 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc
Confidence 899999999999873 2223456899999999998432221111 3457789999999998774
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.5e-08 Score=96.90 Aligned_cols=78 Identities=24% Similarity=0.258 Sum_probs=36.5
Q ss_pred CccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEee
Q 038165 382 SLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLR 461 (731)
Q Consensus 382 ~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~ 461 (731)
.|..|||++| .++.+-++..-++.++.|++++|+|..+-+ +..|++|+.||+++| .++++... -.++-|.++|.+.
T Consensus 285 ~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gw-h~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGW-HLKLGNIKTLKLA 360 (490)
T ss_pred hhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhh-HhhhcCEeeeehh
Confidence 3445555555 444444444444555555555555544432 444555555555554 33333221 2234444445544
Q ss_pred Cc
Q 038165 462 GC 463 (731)
Q Consensus 462 ~~ 463 (731)
+|
T Consensus 361 ~N 362 (490)
T KOG1259|consen 361 QN 362 (490)
T ss_pred hh
Confidence 44
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.6e-09 Score=101.09 Aligned_cols=181 Identities=29% Similarity=0.246 Sum_probs=97.6
Q ss_pred CCCEEeccCCCCCC--cchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCccc
Q 038165 406 SLHHLDLSSADITG--LPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEP 483 (731)
Q Consensus 406 ~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (731)
.|++|||+.+.|+. +..-+..+.+|+.|.+.|...-..+-.. +.+-.+|+.|+++.|+.... .
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~--------------n 250 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE--------------N 250 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch--------------h
Confidence 48888888877665 4444566777777777776322222222 55566677777766532210 0
Q ss_pred chhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCcc
Q 038165 484 LMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPE 563 (731)
Q Consensus 484 ~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 563 (731)
+. ..-+.+++.|.+|+++||....-....
T Consensus 251 ----------------------~~---------------------------~ll~~scs~L~~LNlsWc~l~~~~Vtv-- 279 (419)
T KOG2120|consen 251 ----------------------AL---------------------------QLLLSSCSRLDELNLSWCFLFTEKVTV-- 279 (419)
T ss_pred ----------------------HH---------------------------HHHHHhhhhHhhcCchHhhccchhhhH--
Confidence 00 011444556666666666554311110
Q ss_pred ccccccccccCCccEEEEeccCC----CCCchhh-ccCCccEEeeecccccccccccccccccccccCCCCccCcCccEe
Q 038165 564 EVKKLFRNGFRSLNTVVLRSCRG----KDLTWLV-FVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESL 638 (731)
Q Consensus 564 ~~~~~~~~~l~~L~~L~L~~c~~----~~~~~l~-~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 638 (731)
+..+--++|+.|+|+||.. ..+..+. .+|+|.+|+|++|..++.-. -..+..|+.|++|
T Consensus 280 ----~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~------------~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 280 ----AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC------------FQEFFKFNYLQHL 343 (419)
T ss_pred ----HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH------------HHHHHhcchheee
Confidence 0001135667777777665 2233332 56777777777776554321 1234567777777
Q ss_pred eccccccccc-cCCCCcCCCCccEEeecccc
Q 038165 639 SVWRGINLKS-VYPNPLPFPKLKKIEVRECR 668 (731)
Q Consensus 639 ~L~~~~~L~~-l~~~~~~lp~L~~L~l~~C~ 668 (731)
.++.|..+-- -.......|+|.+|++.+|-
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 7777765421 11134456777777777763
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.48 E-value=1.3e-07 Score=71.28 Aligned_cols=60 Identities=35% Similarity=0.593 Sum_probs=39.3
Q ss_pred CCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEEeccCCCC
Q 038165 357 PRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHLDLSSADI 417 (731)
Q Consensus 357 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L~L~~~~l 417 (731)
++|++|++.+|.+..+++..|..+++|++|++++| .+..+|. .|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45666777777766776666667777777777766 5555543 556666666666666653
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=2.2e-08 Score=104.06 Aligned_cols=133 Identities=26% Similarity=0.371 Sum_probs=116.2
Q ss_pred ccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEE
Q 038165 331 IEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHL 410 (731)
Q Consensus 331 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L 410 (731)
+..+..+..++++.|.+..+|.-.-.--|++|.+++|+++.+|+. ++.+..|..||.+.| .+..+|+.++.+..|+.|
T Consensus 117 i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHH
Confidence 344457778888889988887665556689999999999999988 678999999999999 999999999999999999
Q ss_pred eccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCC
Q 038165 411 DLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 411 ~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
+++.|++..+|+++..| .|..||++.| ++..||-. |.+|+.|++|-+.+|.+.+-
T Consensus 195 ~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCCCC
Confidence 99999999999999955 5999999988 88999988 89999999999999987753
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.39 E-value=7.5e-09 Score=103.68 Aligned_cols=284 Identities=19% Similarity=0.183 Sum_probs=171.8
Q ss_pred cceEEEeecCCcccCCC---C-CCCCCeeEEEcccCC-cccc-ChhhhcCCCCccEEEcCCCCCCCcc--cccccCCcCC
Q 038165 336 GAKRVSLMGNGIESLSE---I-PTCPRLVTLLVDENP-IVEI-TDGFFQSMSSLRVLSLSENFHLSTL--PSGISSLVSL 407 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~---~-~~~~~L~~L~l~~~~-l~~~-~~~~~~~l~~L~~L~L~~~~~~~~l--P~~i~~l~~L 407 (731)
.++.+++.+..-..... + .+++++..|.+.++. ++.. -.++-..+++|++|+|..|..++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56777777765443333 2 789999999999987 3322 2233457899999999998566532 2223467899
Q ss_pred CEEeccCC-CCCC--cchHHhcCCcCcEeecccccccccccccccC----CCCCCcEEEeeCcccCCCchhhhhhhhcCC
Q 038165 408 HHLDLSSA-DITG--LPQELKALEKLRYLNLEYAFNLSIIPHQLIS----GFSNLEVLRLRGCGCCSVTEEEEANVLCAD 480 (731)
Q Consensus 408 ~~L~L~~~-~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 480 (731)
.||++++| .|+. +-.-.....+|+.+.++||. .++.+.+. .+.-+-.+++..|...+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD------------ 283 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTD------------ 283 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccc------------
Confidence 99999999 6655 32334456667778777873 33333232 223344445545533311
Q ss_pred cccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCccccc--ccccCCccEEeccCCCccc-e
Q 038165 481 AEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLH--LAYMENLQELDLEYCNLEE-M 557 (731)
Q Consensus 481 ~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~-~ 557 (731)
..+.. .......|+.|..++|......+.. -.+..+|+.|.+++|.... .
T Consensus 284 --~~~~~-------------------------i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 284 --EDLWL-------------------------IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred --hHHHH-------------------------HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 01111 1111224555555555532222222 3456788888888887532 1
Q ss_pred eecCccccccccccccCCccEEEEeccCC-CC--Cchhh-ccCCccEEeeecccccccccccccccccccccCCCCccCc
Q 038165 558 KIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KD--LTWLV-FVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFA 633 (731)
Q Consensus 558 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~--~~~l~-~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 633 (731)
-.. .-..+.+.|+.+++.+|.. .. +..+. ++|.|+.|.|+.|+.+++... ..+ ........
T Consensus 337 ~ft-------~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l-~~~~c~~~ 401 (483)
T KOG4341|consen 337 GFT-------MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHL-SSSSCSLE 401 (483)
T ss_pred hhh-------hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhh-hhcccccc
Confidence 111 1124478899999988887 22 33333 788999999999987665411 011 23456778
Q ss_pred CccEeeccccccccccCC-CCcCCCCccEEeeccccCCCCCCCC
Q 038165 634 QLESLSVWRGINLKSVYP-NPLPFPKLKKIEVRECRQLKKLPLN 676 (731)
Q Consensus 634 ~L~~L~L~~~~~L~~l~~-~~~~lp~L~~L~l~~C~~L~~lP~~ 676 (731)
.|+.|.|.+||.+.+-.. .....++|+.+++.+|....+-|..
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence 899999999987655322 2335689999999999888775543
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=9.4e-07 Score=99.87 Aligned_cols=108 Identities=23% Similarity=0.309 Sum_probs=83.0
Q ss_pred CeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCC-cchHHhcCCcCcEeecc
Q 038165 358 RLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITG-LPQELKALEKLRYLNLE 436 (731)
Q Consensus 358 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~ 436 (731)
.++.|++.++.+....+..+..+++|++|+|++|.....+|..++.+.+|++|+|++|++.. +|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47788888888765544458888889999998884445788888888889999998888874 78888888899999998
Q ss_pred cccccccccccccCC-CCCCcEEEeeCcccC
Q 038165 437 YAFNLSIIPHQLISG-FSNLEVLRLRGCGCC 466 (731)
Q Consensus 437 ~~~~l~~lp~~~i~~-l~~L~~L~l~~~~~~ 466 (731)
+|.....+|.. ++. +.++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 88666678876 444 356777888776543
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=2.5e-07 Score=69.72 Aligned_cols=58 Identities=34% Similarity=0.521 Sum_probs=32.0
Q ss_pred CCCEEeccCCCCCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcc
Q 038165 406 SLHHLDLSSADITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCG 464 (731)
Q Consensus 406 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 464 (731)
+|++|++++|+++.+|. .+..+++|++|++++| .++.+|++.+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555553 3445555555555555 4455555545566666666665553
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.31 E-value=2.7e-07 Score=90.72 Aligned_cols=243 Identities=16% Similarity=0.084 Sum_probs=121.8
Q ss_pred CCCCCCeeEEEcccCCcc----ccChhhhcCCCCccEEEcCCCCCC----Cccccc-------ccCCcCCCEEeccCCCC
Q 038165 353 IPTCPRLVTLLVDENPIV----EITDGFFQSMSSLRVLSLSENFHL----STLPSG-------ISSLVSLHHLDLSSADI 417 (731)
Q Consensus 353 ~~~~~~L~~L~l~~~~l~----~~~~~~~~~l~~L~~L~L~~~~~~----~~lP~~-------i~~l~~L~~L~L~~~~l 417 (731)
...+..+..+++++|.+. ......+.+.+.|+..+|++- .. .++|+. +-..++|++|+|+.|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 355667777777777642 112223556677888777765 32 234433 23445788888887744
Q ss_pred CC-----cchHHhcCCcCcEeeccccccccccccc-------------ccCCCCCCcEEEeeCcccCCCchhhhhhhhcC
Q 038165 418 TG-----LPQELKALEKLRYLNLEYAFNLSIIPHQ-------------LISGFSNLEVLRLRGCGCCSVTEEEEANVLCA 479 (731)
Q Consensus 418 ~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp~~-------------~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 479 (731)
.. +-.-+.+...|++|.|.+| .++..... .+..-++|+++...+|..-..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~----------- 172 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG----------- 172 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-----------
Confidence 32 2233566777888888877 33321111 134456677777777654421
Q ss_pred CcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceee
Q 038165 480 DAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKI 559 (731)
Q Consensus 480 ~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 559 (731)
.......-+...+.|+.+.+..++...-. .......+..+++|+.|++.+|.+..--.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG----------------------~~al~eal~~~~~LevLdl~DNtft~egs 230 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEG----------------------VTALAEALEHCPHLEVLDLRDNTFTLEGS 230 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCch----------------------hHHHHHHHHhCCcceeeecccchhhhHHH
Confidence 00111222333344444444433221000 00111235666777777777776544100
Q ss_pred cCccccccccccccCCccEEEEeccCC--CCCchh-----hccCCccEEeeecccccccccccccccccccccCCCCccC
Q 038165 560 DCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWL-----VFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFF 632 (731)
Q Consensus 560 ~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l-----~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 632 (731)
..+. -+.+.+++|+.|+++.|.. .....+ ...|+|+.|.+.+|.--.+-.. .+ ..++..-
T Consensus 231 ~~La----kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~-----~l----a~~~~ek 297 (382)
T KOG1909|consen 231 VALA----KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL-----AL----AACMAEK 297 (382)
T ss_pred HHHH----HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH-----HH----HHHHhcc
Confidence 0000 0012256777777777766 222222 1467777777776642211100 00 1244456
Q ss_pred cCccEeecccc
Q 038165 633 AQLESLSVWRG 643 (731)
Q Consensus 633 ~~L~~L~L~~~ 643 (731)
|.|+.|.|.+|
T Consensus 298 ~dL~kLnLngN 308 (382)
T KOG1909|consen 298 PDLEKLNLNGN 308 (382)
T ss_pred hhhHHhcCCcc
Confidence 77777777765
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.5e-08 Score=93.15 Aligned_cols=85 Identities=26% Similarity=0.281 Sum_probs=67.2
Q ss_pred CCccEEEcCCCCCCC--cccccccCCcCCCEEeccCCCCCC-cchHHhcCCcCcEeecccccccccccc-cccCCCCCCc
Q 038165 381 SSLRVLSLSENFHLS--TLPSGISSLVSLHHLDLSSADITG-LPQELKALEKLRYLNLEYAFNLSIIPH-QLISGFSNLE 456 (731)
Q Consensus 381 ~~L~~L~L~~~~~~~--~lP~~i~~l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~ 456 (731)
..|++|||++. .++ .+-.-++.+.+|+.|.|.+..+.. +-..|.+=.+|+.|+++.|..++.-.. -++++++.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 46999999988 554 344445678899999999998877 667788889999999999987765432 2367889999
Q ss_pred EEEeeCcccC
Q 038165 457 VLRLRGCGCC 466 (731)
Q Consensus 457 ~L~l~~~~~~ 466 (731)
.|+++.|...
T Consensus 264 ~LNlsWc~l~ 273 (419)
T KOG2120|consen 264 ELNLSWCFLF 273 (419)
T ss_pred hcCchHhhcc
Confidence 9999998655
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=9.4e-06 Score=84.09 Aligned_cols=72 Identities=19% Similarity=0.362 Sum_probs=43.6
Q ss_pred cCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCC-CCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCc
Q 038165 378 QSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSA-DITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLE 456 (731)
Q Consensus 378 ~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~ 456 (731)
..+.+++.|++++| .+.++| .+ ..+|+.|.+++| .++.+|..+. .+|++|++++|..+..+|.. |+
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s-------Le 115 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES-------VR 115 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc-------cc
Confidence 34566777777777 666666 22 235777777665 5666665442 46777777777666656542 55
Q ss_pred EEEeeC
Q 038165 457 VLRLRG 462 (731)
Q Consensus 457 ~L~l~~ 462 (731)
.|.+.+
T Consensus 116 ~L~L~~ 121 (426)
T PRK15386 116 SLEIKG 121 (426)
T ss_pred eEEeCC
Confidence 555544
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.16 E-value=1.7e-07 Score=101.15 Aligned_cols=122 Identities=32% Similarity=0.450 Sum_probs=52.7
Q ss_pred ceEEEeecCCccc-CCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCC
Q 038165 337 AKRVSLMGNGIES-LSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSA 415 (731)
Q Consensus 337 l~~l~l~~~~~~~-l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~ 415 (731)
+..+.+..|.+.. ...+..+.+|..|++.+|.+..+... +..+++|++|++++| .+..+. .+..+..|+.|++++|
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheeccC
Confidence 3333344444444 22244445555555555544444332 334445555555554 444443 3344444555555555
Q ss_pred CCCCcchHHhcCCcCcEeecccccccccccc-cccCCCCCCcEEEeeCcc
Q 038165 416 DITGLPQELKALEKLRYLNLEYAFNLSIIPH-QLISGFSNLEVLRLRGCG 464 (731)
Q Consensus 416 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 464 (731)
.|+.++ ++..+.+|+.+++++| .+..++. . ...+.+|+.+++.++.
T Consensus 151 ~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 151 LISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred cchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 444433 2333444444555444 2333332 1 1344444444444443
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.10 E-value=7.1e-06 Score=92.84 Aligned_cols=110 Identities=24% Similarity=0.304 Sum_probs=89.9
Q ss_pred cceEEEeecCCccc-C-CCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEecc
Q 038165 336 GAKRVSLMGNGIES-L-SEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLS 413 (731)
Q Consensus 336 ~l~~l~l~~~~~~~-l-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~ 413 (731)
.++.|++.++.+.. + +.+..+++|+.|++++|.+....+..++.+++|++|+|++|.....+|..++.+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47788899888864 2 346889999999999999875444448999999999999995556899999999999999999
Q ss_pred CCCCC-CcchHHhcC-CcCcEeeccccccccccc
Q 038165 414 SADIT-GLPQELKAL-EKLRYLNLEYAFNLSIIP 445 (731)
Q Consensus 414 ~~~l~-~lp~~i~~L-~~L~~L~L~~~~~l~~lp 445 (731)
+|++. .+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99887 489888764 577889999886554444
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=3.4e-07 Score=98.82 Aligned_cols=105 Identities=31% Similarity=0.363 Sum_probs=57.4
Q ss_pred CCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeec
Q 038165 356 CPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNL 435 (731)
Q Consensus 356 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 435 (731)
+..+..+.+..+.+..+... +..+.+|.+|++.+| .+..+...+..+++|++|++++|.|+.+. ++..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 34444444555544432222 444556666666666 55555543555666666666666666654 4555555666666
Q ss_pred ccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 436 EYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 436 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
.+| .++.++. +..+++|+.+++.+|.+.
T Consensus 148 ~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 148 SGN-LISDISG--LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ccC-cchhccC--CccchhhhcccCCcchhh
Confidence 666 4555554 455666666666665554
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=6.9e-06 Score=56.54 Aligned_cols=39 Identities=46% Similarity=0.593 Sum_probs=18.7
Q ss_pred CCCEEeccCCCCCCcchHHhcCCcCcEeeccccccccccc
Q 038165 406 SLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIP 445 (731)
Q Consensus 406 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp 445 (731)
+|++|++++|+|+.+|..+++|++|+.|++++| .++.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 455555555555555544555555555555555 334433
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=7.7e-06 Score=56.29 Aligned_cols=40 Identities=35% Similarity=0.582 Sum_probs=31.4
Q ss_pred CCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcc
Q 038165 381 SSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLP 421 (731)
Q Consensus 381 ~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp 421 (731)
++|++|++++| .++.+|..+++|++|++|++++|+|+++|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 46888888888 88888877888888888888888888765
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=1.6e-06 Score=73.69 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=87.9
Q ss_pred cccceEEEeecCCcccCC----CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCE
Q 038165 334 WEGAKRVSLMGNGIESLS----EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHH 409 (731)
Q Consensus 334 ~~~l~~l~l~~~~~~~l~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~ 409 (731)
......++++.+.+-.++ .+....+|...++++|.+.++|+.+-.+++.++.|++++| .+..+|.++..++.|+.
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRS 104 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhh
Confidence 344555566655554332 2366678888899999988899887777888899999988 88899998989999999
Q ss_pred EeccCCCCCCcchHHhcCCcCcEeeccccccccccccc
Q 038165 410 LDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQ 447 (731)
Q Consensus 410 L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 447 (731)
|+++.|.+...|.-+..|.+|-.|+..++ ....+|-.
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 99999999888988888888888888887 55666654
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.88 E-value=5.2e-07 Score=96.53 Aligned_cols=102 Identities=28% Similarity=0.319 Sum_probs=46.2
Q ss_pred CeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeeccc
Q 038165 358 RLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEY 437 (731)
Q Consensus 358 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 437 (731)
.|.+.++++|.+..+..+ +.-++.|+.|+|++| .+.+.- .+..+++|++|||++|.+..+|.--..--+|+.|+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 334444444444333332 444555555555555 333332 44445555555555555555443111111255555555
Q ss_pred ccccccccccccCCCCCCcEEEeeCccc
Q 038165 438 AFNLSIIPHQLISGFSNLEVLRLRGCGC 465 (731)
Q Consensus 438 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 465 (731)
| .++.+-. +.+|.+|+.|+++.|-+
T Consensus 242 N-~l~tL~g--ie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 242 N-ALTTLRG--IENLKSLYGLDLSYNLL 266 (1096)
T ss_pred c-HHHhhhh--HHhhhhhhccchhHhhh
Confidence 5 4444443 44555555555555433
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=5.3e-05 Score=78.63 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=60.4
Q ss_pred ccccceEEEeecCCcccCCCCCCCCCeeEEEcccCC-ccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEe
Q 038165 333 EWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENP-IVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLD 411 (731)
Q Consensus 333 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~ 411 (731)
.+.++++|+++++.+..+|.+ ..+|++|.+.+|. +..+|.. + .++|++|++++|..+..+|. +|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceEE
Confidence 346788999999988888743 3479999998866 6666654 3 36899999999877777875 466677
Q ss_pred ccCCC---CCCcchHHhc
Q 038165 412 LSSAD---ITGLPQELKA 426 (731)
Q Consensus 412 L~~~~---l~~lp~~i~~ 426 (731)
+.++. +..+|.++..
T Consensus 119 L~~n~~~~L~~LPssLk~ 136 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTS 136 (426)
T ss_pred eCCCCCcccccCcchHhh
Confidence 76653 5667876543
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.85 E-value=3.1e-06 Score=83.47 Aligned_cols=250 Identities=19% Similarity=0.145 Sum_probs=141.7
Q ss_pred hcCCCCccEEEcCCCCCCC-----cccccccCCcCCCEEeccCC---C-CCCcchHH-------hcCCcCcEeecccccc
Q 038165 377 FQSMSSLRVLSLSENFHLS-----TLPSGISSLVSLHHLDLSSA---D-ITGLPQEL-------KALEKLRYLNLEYAFN 440 (731)
Q Consensus 377 ~~~l~~L~~L~L~~~~~~~-----~lP~~i~~l~~L~~L~L~~~---~-l~~lp~~i-------~~L~~L~~L~L~~~~~ 440 (731)
...+..+.+++|++| .+. .+-+.+.+.++|+.-+++.- + ..++|+.+ ...++|++|||+.|-.
T Consensus 26 ~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 556788999999999 443 24445666778999888763 2 23356543 3456899999999833
Q ss_pred cccccc---cccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhcc-CCCCcEEEEEeechhHHHhhhCCchh
Q 038165 441 LSIIPH---QLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLG-LKRLNVLSWTFRSSLAVQKFLKYPKL 516 (731)
Q Consensus 441 l~~lp~---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-L~~L~~l~~~~~~~~~~~~l~~~~~~ 516 (731)
-..-++ ..++++++|++|.+.+|++.. ..-+.+.. |..|. .......
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~---------------~ag~~l~~al~~l~--------------~~kk~~~ 155 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGP---------------EAGGRLGRALFELA--------------VNKKAAS 155 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCCh---------------hHHHHHHHHHHHHH--------------HHhccCC
Confidence 222222 236778999999999998762 11111111 11110 0001111
Q ss_pred hccceEEEEeecCCCCccc----ccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC--CC--
Q 038165 517 VSITQSVWVYQCESAPFNV----LHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KD-- 588 (731)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~-- 588 (731)
...|+.+....|...+... ..++.++.|+.+.+..|.+..-...... ....++++|+.|+|..|.. ..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~----eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA----EALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHH----HHHHhCCcceeeecccchhhhHHHH
Confidence 2355566555554222221 1266678888888888876541110000 1113478888888888877 11
Q ss_pred --CchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccc----cCCCCcCCCCccEE
Q 038165 589 --LTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKS----VYPNPLPFPKLKKI 662 (731)
Q Consensus 589 --~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~----l~~~~~~lp~L~~L 662 (731)
-..+..+++|+.|++++|. ++.-........ ....+|+|+.|.+.++.--.. +.......|.|+.|
T Consensus 232 ~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a-------l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kL 303 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA-------LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKL 303 (382)
T ss_pred HHHHHhcccchheeecccccc-cccccHHHHHHH-------HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHh
Confidence 1234467788888888883 332221111111 223478888888887642211 11123346888888
Q ss_pred eecccc
Q 038165 663 EVRECR 668 (731)
Q Consensus 663 ~l~~C~ 668 (731)
++++|.
T Consensus 304 nLngN~ 309 (382)
T KOG1909|consen 304 NLNGNR 309 (382)
T ss_pred cCCccc
Confidence 888765
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=1.3e-05 Score=77.30 Aligned_cols=96 Identities=24% Similarity=0.341 Sum_probs=52.4
Q ss_pred EEEeecCCcccCCCC----CCCCCeeEEEcccCCccccCh--hhhcCCCCccEEEcCCCCCC----CcccccccCCcCCC
Q 038165 339 RVSLMGNGIESLSEI----PTCPRLVTLLVDENPIVEITD--GFFQSMSSLRVLSLSENFHL----STLPSGISSLVSLH 408 (731)
Q Consensus 339 ~l~l~~~~~~~l~~~----~~~~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~~~~----~~lP~~i~~l~~L~ 408 (731)
-+.+.++.+.....+ ..+..++.+++.+|.++.... .++.++|.|++|+|+.| .+ +.+| ..+.+|+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp---~p~~nl~ 124 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLP---LPLKNLR 124 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCc---ccccceE
Confidence 344444444443332 456667777777776554332 23556777777777766 33 2333 2445677
Q ss_pred EEeccCCCC--CCcchHHhcCCcCcEeecccc
Q 038165 409 HLDLSSADI--TGLPQELKALEKLRYLNLEYA 438 (731)
Q Consensus 409 ~L~L~~~~l--~~lp~~i~~L~~L~~L~L~~~ 438 (731)
+|-|.++.+ +..-..+..++.++.|.++.|
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 777766643 234444555555555555554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=4.3e-05 Score=69.81 Aligned_cols=102 Identities=26% Similarity=0.383 Sum_probs=77.1
Q ss_pred ccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc--cccCCcCCCEEec
Q 038165 335 EGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS--GISSLVSLHHLDL 412 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~--~i~~l~~L~~L~L 412 (731)
.....+++.+|++..++.++.++.|.+|.+.+|.++.+.+..-..+++|..|.|.+| ++.++-+ .+..++.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 366778899999999999999999999999999999998886667888999999998 6665532 3456778888888
Q ss_pred cCCCCCCcchH----HhcCCcCcEeeccc
Q 038165 413 SSADITGLPQE----LKALEKLRYLNLEY 437 (731)
Q Consensus 413 ~~~~l~~lp~~----i~~L~~L~~L~L~~ 437 (731)
-+|.+++.+.- +.++++|++||..+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 88877664421 44555555555543
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=1.1e-05 Score=77.74 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=11.2
Q ss_pred CCccCcCccEeecccccccccc
Q 038165 628 ERNFFAQLESLSVWRGINLKSV 649 (731)
Q Consensus 628 ~~~~~~~L~~L~L~~~~~L~~l 649 (731)
.+..||+|..|.+.+.|-+..+
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHcCCchhheeeccCCcccccc
Confidence 3445555555555555444443
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=9.4e-07 Score=94.67 Aligned_cols=128 Identities=26% Similarity=0.346 Sum_probs=94.0
Q ss_pred ccccceEEEeecCCcccCC-CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEe
Q 038165 333 EWEGAKRVSLMGNGIESLS-EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLD 411 (731)
Q Consensus 333 ~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~ 411 (731)
.|.++..+++++|.+..+. .+.-++.|+.|++++|++.+.. ++..+++|+.|||++| .+..+|.--..-.+|+.|+
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheeee
Confidence 3556777777777776653 3466788888899888887766 4788888999999888 7877774322223588899
Q ss_pred ccCCCCCCcchHHhcCCcCcEeecccccccc---cccccccCCCCCCcEEEeeCcccCC
Q 038165 412 LSSADITGLPQELKALEKLRYLNLEYAFNLS---IIPHQLISGFSNLEVLRLRGCGCCS 467 (731)
Q Consensus 412 L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~---~lp~~~i~~l~~L~~L~l~~~~~~~ 467 (731)
+++|.++.|- ++.+|.+|+.||+++| .+. .+-+ ++.|..|+.|++.||.+.-
T Consensus 239 lrnN~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~p--LwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEP--LWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhH--HHHHHHHHHHhhcCCcccc
Confidence 9988888874 7888889999999888 333 2323 6677788888888886653
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=6.9e-05 Score=84.62 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=92.7
Q ss_pred cceEEEeecCCcccCC----CCCCCCCeeEEEcccCCcccc-ChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEE
Q 038165 336 GAKRVSLMGNGIESLS----EIPTCPRLVTLLVDENPIVEI-TDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHL 410 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~----~~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L 410 (731)
+++++++.+...-.-. -...+|.|++|.+.+-.+..- -.....++++|+.||++++ +++.+ ..+++|++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHH
Confidence 7777777764432111 126689999999998764322 1234678999999999999 88888 689999999999
Q ss_pred eccCCCCCCcc--hHHhcCCcCcEeecccccccccc--cc---cccCCCCCCcEEEeeCcccC
Q 038165 411 DLSSADITGLP--QELKALEKLRYLNLEYAFNLSII--PH---QLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 411 ~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~l--p~---~~i~~l~~L~~L~l~~~~~~ 466 (731)
.+++-.++.-. ..+.+|++|++||++.......- .. +.-..|++|+.|+.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99887776532 36788999999999987443221 11 00235899999999987655
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00011 Score=83.12 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=74.0
Q ss_pred CCCeeEEEcccCC-c-cccChhhhcCCCCccEEEcCCCCCC-CcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcE
Q 038165 356 CPRLVTLLVDENP-I-VEITDGFFQSMSSLRVLSLSENFHL-STLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRY 432 (731)
Q Consensus 356 ~~~L~~L~l~~~~-l-~~~~~~~~~~l~~L~~L~L~~~~~~-~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 432 (731)
-.+|+.|+++|.. + .+.+...-..+|+|+.|.+++-... .++-.-..++++|..||+++|+++.+ .++++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4688889998876 2 2334443455889999998875111 12223345678899999999998888 68899999999
Q ss_pred eecccccccc--cccccccCCCCCCcEEEeeCcccC
Q 038165 433 LNLEYAFNLS--IIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 433 L~L~~~~~l~--~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
|.+.+-.... .+-+ +-+|++|++|+++.....
T Consensus 200 L~mrnLe~e~~~~l~~--LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLID--LFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchhhHHH--HhcccCCCeeeccccccc
Confidence 8887653221 1112 667888899998876554
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.20 E-value=8.1e-05 Score=63.57 Aligned_cols=87 Identities=26% Similarity=0.399 Sum_probs=78.1
Q ss_pred cceEEEeecCCcccCCCC--CCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEecc
Q 038165 336 GAKRVSLMGNGIESLSEI--PTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLS 413 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~ 413 (731)
.+..+++++|.++++|.- .+++.+.+|++.+|.++++|.. +..++.||.|+++.| ++...|.-|..|.+|-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCC
Confidence 677789999999887653 6677899999999999999998 889999999999999 999999999999999999999
Q ss_pred CCCCCCcchHH
Q 038165 414 SADITGLPQEL 424 (731)
Q Consensus 414 ~~~l~~lp~~i 424 (731)
++.+..+|-.+
T Consensus 132 ~na~~eid~dl 142 (177)
T KOG4579|consen 132 ENARAEIDVDL 142 (177)
T ss_pred CCccccCcHHH
Confidence 99999988763
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.84 E-value=0.0016 Score=59.83 Aligned_cols=103 Identities=18% Similarity=0.298 Sum_probs=59.4
Q ss_pred CCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccC-CcCCCEEeccCCCCCCcch--HHhcCCcCcEe
Q 038165 357 PRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISS-LVSLHHLDLSSADITGLPQ--ELKALEKLRYL 433 (731)
Q Consensus 357 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~-l~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L 433 (731)
.....+++.+|.+..++. |..++.|.+|.|++| .+..+-+.+.. +++|..|.|.+|+|.++-+ .+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345666777776655554 666777777777777 55555444433 4457777777776665422 24556666666
Q ss_pred eccccccccccc---ccccCCCCCCcEEEeeCc
Q 038165 434 NLEYAFNLSIIP---HQLISGFSNLEVLRLRGC 463 (731)
Q Consensus 434 ~L~~~~~l~~lp---~~~i~~l~~L~~L~l~~~ 463 (731)
.+-+|. ...-+ .-++.++++|+.|++.+.
T Consensus 119 tll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 666652 22211 122556666666666653
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.0022 Score=61.56 Aligned_cols=83 Identities=25% Similarity=0.252 Sum_probs=36.9
Q ss_pred CCCccEEEcCCC--CCCCcccccccCCcCCCEEeccCCCCCCcc--hHHhcCCcCcEeeccccccccccc---ccccCCC
Q 038165 380 MSSLRVLSLSEN--FHLSTLPSGISSLVSLHHLDLSSADITGLP--QELKALEKLRYLNLEYAFNLSIIP---HQLISGF 452 (731)
Q Consensus 380 l~~L~~L~L~~~--~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp---~~~i~~l 452 (731)
+++|++|.++.| +....++.....+++|++|++++|+|..+- ..+..+.+|..|++.+|.. +.+. ..++.-+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~-~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV-TNLDDYREKVFLLL 142 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc-cccccHHHHHHHHh
Confidence 444444444444 222233323333345555555555433210 1244555666666666632 2222 1224455
Q ss_pred CCCcEEEeeCc
Q 038165 453 SNLEVLRLRGC 463 (731)
Q Consensus 453 ~~L~~L~l~~~ 463 (731)
++|..|+-..+
T Consensus 143 ~~L~~LD~~dv 153 (260)
T KOG2739|consen 143 PSLKYLDGCDV 153 (260)
T ss_pred hhhcccccccc
Confidence 66666665554
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.0014 Score=62.83 Aligned_cols=101 Identities=26% Similarity=0.381 Sum_probs=63.5
Q ss_pred ccceEEEeecCCcccCCCCCCCCCeeEEEcccCC--cc-ccChhhhcCCCCccEEEcCCCCCCCc---ccccccCCcCCC
Q 038165 335 EGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENP--IV-EITDGFFQSMSSLRVLSLSENFHLST---LPSGISSLVSLH 408 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~--l~-~~~~~~~~~l~~L~~L~L~~~~~~~~---lP~~i~~l~~L~ 408 (731)
..+..+++.+..+..+..++.+++|+.|.++.|. .. .++.. ...+++|++|++++| .++. ++ ....+.+|.
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~-pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLR-PLKELENLK 119 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccc-hhhhhcchh
Confidence 4666667777777777777788888888887773 22 23322 345578888888887 4432 22 234566777
Q ss_pred EEeccCCCCCCcch----HHhcCCcCcEeecccc
Q 038165 409 HLDLSSADITGLPQ----ELKALEKLRYLNLEYA 438 (731)
Q Consensus 409 ~L~L~~~~l~~lp~----~i~~L~~L~~L~L~~~ 438 (731)
.|++..|..+.+-. .+.-+++|.+|+-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 77777776655422 2445677777765554
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.31 E-value=0.00058 Score=75.83 Aligned_cols=88 Identities=31% Similarity=0.251 Sum_probs=48.4
Q ss_pred hcCCCCccEEEcCCCCCCCc--ccccccCCcCCCEEeccCC--CCCCc----chHHhcCCcCcEeecccccccccccccc
Q 038165 377 FQSMSSLRVLSLSENFHLST--LPSGISSLVSLHHLDLSSA--DITGL----PQELKALEKLRYLNLEYAFNLSIIPHQL 448 (731)
Q Consensus 377 ~~~l~~L~~L~L~~~~~~~~--lP~~i~~l~~L~~L~L~~~--~l~~l----p~~i~~L~~L~~L~L~~~~~l~~lp~~~ 448 (731)
...+++|+.|.+.++..+.. +-......++|+.|+++++ .+... +.....+.+|+.|++++|..++..--..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34467778887777755554 3234556677888887763 22221 1223445667777777764333322111
Q ss_pred c-CCCCCCcEEEeeCcc
Q 038165 449 I-SGFSNLEVLRLRGCG 464 (731)
Q Consensus 449 i-~~l~~L~~L~l~~~~ 464 (731)
+ ..+++|++|.+.+|.
T Consensus 264 l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCS 280 (482)
T ss_pred HHhhCCCcceEccCCCC
Confidence 2 225667777666554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.0003 Score=67.43 Aligned_cols=62 Identities=35% Similarity=0.354 Sum_probs=31.0
Q ss_pred hcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcch--HHhcCCcCcEeecccccc
Q 038165 377 FQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQ--ELKALEKLRYLNLEYAFN 440 (731)
Q Consensus 377 ~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~ 440 (731)
..+|+.|++|.|+-| .+++|- .+..+++|+.|.|+.|.|..+-+ -+.+|++|+.|.|..|..
T Consensus 37 c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 344555555555555 444443 34445555555555555544432 244555566665555543
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.14 E-value=0.00087 Score=74.41 Aligned_cols=113 Identities=25% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCCCCeeEEEcccCC-ccccC-hhhhcCCCCccEEEcCCC-CCCCcc----cccccCCcCCCEEeccCCC-CCC--cchH
Q 038165 354 PTCPRLVTLLVDENP-IVEIT-DGFFQSMSSLRVLSLSEN-FHLSTL----PSGISSLVSLHHLDLSSAD-ITG--LPQE 423 (731)
Q Consensus 354 ~~~~~L~~L~l~~~~-l~~~~-~~~~~~l~~L~~L~L~~~-~~~~~l----P~~i~~l~~L~~L~L~~~~-l~~--lp~~ 423 (731)
..++.|+.|.+.++. +.... ..+...+++|+.|+++++ ...... +.....+.+|+.|+++++. ++. +..-
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 447888888888876 44322 234667899999999873 122211 1233456889999999986 655 2222
Q ss_pred HhcCCcCcEeeccccccccccc-ccccCCCCCCcEEEeeCcccC
Q 038165 424 LKALEKLRYLNLEYAFNLSIIP-HQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 424 i~~L~~L~~L~L~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~~~ 466 (731)
...+++|++|.+.+|..++.-. ..+..++++|++|++++|...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2337899999988886443221 112456788999999988654
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.08 E-value=0.0064 Score=58.45 Aligned_cols=43 Identities=28% Similarity=0.270 Sum_probs=24.6
Q ss_pred HhcCCcCcEeecccccccccccc---cccCCCCCCcEEEeeCcccC
Q 038165 424 LKALEKLRYLNLEYAFNLSIIPH---QLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 424 i~~L~~L~~L~L~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~~ 466 (731)
+-++++|+..+|+.|-.-...|+ ..|+.-+.|.||.+.+|++-
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 34556666666666643333332 22556667777777777654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.00075 Score=64.83 Aligned_cols=97 Identities=28% Similarity=0.378 Sum_probs=63.4
Q ss_pred ccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc--cccCCcCCCEEec
Q 038165 335 EGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS--GISSLVSLHHLDL 412 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~--~i~~l~~L~~L~L 412 (731)
.+++.|++.++++.++.-..+|+.|.+|.|+-|.++.+.+ +..+++|+.|+|..| .+.++-+ -+.++++|+.|-|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 4666677777777777777777777777777777766655 667777777777777 5555432 2456777777777
Q ss_pred cCCCCCC-cch-----HHhcCCcCcEee
Q 038165 413 SSADITG-LPQ-----ELKALEKLRYLN 434 (731)
Q Consensus 413 ~~~~l~~-lp~-----~i~~L~~L~~L~ 434 (731)
..|.-.. -+. -+..|+||+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 7663221 221 245566777664
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.72 E-value=0.018 Score=55.46 Aligned_cols=109 Identities=22% Similarity=0.217 Sum_probs=54.4
Q ss_pred CCCeeEEEcccCCcccc----ChhhhcCCCCccEEEcCCCCCCC----cccc-------cccCCcCCCEEeccCCCCCC-
Q 038165 356 CPRLVTLLVDENPIVEI----TDGFFQSMSSLRVLSLSENFHLS----TLPS-------GISSLVSLHHLDLSSADITG- 419 (731)
Q Consensus 356 ~~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~~----~lP~-------~i~~l~~L~~L~L~~~~l~~- 419 (731)
+..+..++++||.+..- ....+.+-.+|++.+++.- ... ++|+ .+-++++|+..+|+.|.+..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 44555555555553211 1111334455666665544 221 2222 23456677777777664432
Q ss_pred cch----HHhcCCcCcEeeccccccccccccccc-------------CCCCCCcEEEeeCcccC
Q 038165 420 LPQ----ELKALEKLRYLNLEYAFNLSIIPHQLI-------------SGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 420 lp~----~i~~L~~L~~L~L~~~~~l~~lp~~~i-------------~~l~~L~~L~l~~~~~~ 466 (731)
.|+ -|.+-+.|.+|.+++| .+..+..+-| ..-+.|++.....|.+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 232 3556667777777777 3443322212 23456777776666544
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0045 Score=35.31 Aligned_cols=7 Identities=57% Similarity=0.600 Sum_probs=2.5
Q ss_pred EEEcCCC
Q 038165 385 VLSLSEN 391 (731)
Q Consensus 385 ~L~L~~~ 391 (731)
+|++++|
T Consensus 4 ~Ldls~n 10 (22)
T PF00560_consen 4 YLDLSGN 10 (22)
T ss_dssp EEEETSS
T ss_pred EEECCCC
Confidence 3333333
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.89 E-value=0.011 Score=33.63 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=15.7
Q ss_pred CCCEEeccCCCCCCcchHHhc
Q 038165 406 SLHHLDLSSADITGLPQELKA 426 (731)
Q Consensus 406 ~L~~L~L~~~~l~~lp~~i~~ 426 (731)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477888888888888776554
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.81 E-value=0.069 Score=46.90 Aligned_cols=103 Identities=17% Similarity=0.359 Sum_probs=45.5
Q ss_pred CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEEeccCCCCCCcchH-HhcCCcC
Q 038165 353 IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHLDLSSADITGLPQE-LKALEKL 430 (731)
Q Consensus 353 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L 430 (731)
|..+.+|+.+.+.. .+..+....|..+++|+.+.+.++ +..++. .|..+.+|+++.+.. .+..++.. +..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 45555666666553 355565555666666666666553 333332 344555666666654 44444433 3346666
Q ss_pred cEeecccccccccccccccCCCCCCcEEEeeC
Q 038165 431 RYLNLEYAFNLSIIPHQLISGFSNLEVLRLRG 462 (731)
Q Consensus 431 ~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~ 462 (731)
+.+++..+ +..++...+.+. +|+.+.+..
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 66666542 455555556565 666666554
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.37 E-value=0.11 Score=45.61 Aligned_cols=114 Identities=19% Similarity=0.384 Sum_probs=54.4
Q ss_pred cccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEE
Q 038165 334 WEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHL 410 (731)
Q Consensus 334 ~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L 410 (731)
.++++.+.+.. .+..++ .|..+++|+.+.+.++ +..++...|.+++.|+.+.+..+ +..++. .|..+.+|+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccccccccc
Confidence 34566666653 454443 4577777888887764 67777777888877888888643 333433 45557788888
Q ss_pred eccCCCCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCC
Q 038165 411 DLSSADITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNL 455 (731)
Q Consensus 411 ~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L 455 (731)
++..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 87654 5555543 4444 777777664 4566666666666655
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.0041 Score=57.25 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=8.1
Q ss_pred cCCccEEeeeccccccc
Q 038165 595 VQNLKVLYIGFCGDMEE 611 (731)
Q Consensus 595 l~~L~~L~L~~~~~l~~ 611 (731)
.++|+.|+|++|+.+++
T Consensus 150 ~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITD 166 (221)
T ss_pred ccchheeeccCCCeech
Confidence 34455555555544443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.95 E-value=0.038 Score=29.15 Aligned_cols=15 Identities=47% Similarity=0.669 Sum_probs=5.2
Q ss_pred CCCEEeccCCCCCCc
Q 038165 406 SLHHLDLSSADITGL 420 (731)
Q Consensus 406 ~L~~L~L~~~~l~~l 420 (731)
+|++|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.92 E-value=0.038 Score=29.15 Aligned_cols=17 Identities=35% Similarity=0.821 Sum_probs=9.1
Q ss_pred CCccEEeeccccCCCCCC
Q 038165 657 PKLKKIEVRECRQLKKLP 674 (731)
Q Consensus 657 p~L~~L~l~~C~~L~~lP 674 (731)
|+|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777777776 66665
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=0.013 Score=54.15 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=57.9
Q ss_pred ceEEEEeecCCCCcccccccccCCccEEeccCCCccc-eeecCccccccccccccCCccEEEEeccCC---CCCchhhcc
Q 038165 520 TQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEE-MKIDCPEEVKKLFRNGFRSLNTVVLRSCRG---KDLTWLVFV 595 (731)
Q Consensus 520 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l 595 (731)
++.++-++++........+.+++.++.|.+.+|.... ...+.+. +..++|+.|+|++|+. ..+.++..+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~-------~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG-------GLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc-------ccccchheeeccCCCeechhHHHHHHHh
Confidence 3444444443333333346777888888998887654 2222221 2479999999999998 567889999
Q ss_pred CCccEEeeeccccccc
Q 038165 596 QNLKVLYIGFCGDMEE 611 (731)
Q Consensus 596 ~~L~~L~L~~~~~l~~ 611 (731)
++|+.|.|.+.+.+..
T Consensus 176 knLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 176 KNLRRLHLYDLPYVAN 191 (221)
T ss_pred hhhHHHHhcCchhhhc
Confidence 9999999988765543
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.06 E-value=0.0077 Score=56.55 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=61.7
Q ss_pred CCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEe
Q 038165 354 PTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYL 433 (731)
Q Consensus 354 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 433 (731)
.......+|+++.|++..+... |+.+..|..|+++.+ .+..+|..++.+..++.+++..|..+.+|.+.+.+++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 4556667777777776555554 566667777778777 77778888877777777777777777788888888888888
Q ss_pred eccccc
Q 038165 434 NLEYAF 439 (731)
Q Consensus 434 ~L~~~~ 439 (731)
++.++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 777764
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.98 E-value=0.01 Score=55.80 Aligned_cols=94 Identities=26% Similarity=0.197 Sum_probs=80.3
Q ss_pred cccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeeccccccccccccccc
Q 038165 370 VEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLI 449 (731)
Q Consensus 370 ~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i 449 (731)
..+|-.-+..+...++||++.+ .+..+-..|+.+..|..|+++.+.+..+|...+.+..++++++.+| +....|.+ .
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~ 107 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-Q 107 (326)
T ss_pred cccchhhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-c
Confidence 3444434566788999999999 7777777888899999999999999999999999999999999887 78899988 8
Q ss_pred CCCCCCcEEEeeCcccC
Q 038165 450 SGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 450 ~~l~~L~~L~l~~~~~~ 466 (731)
++++.++.++..++.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 99999999999887543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.11 E-value=0.29 Score=29.06 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=11.7
Q ss_pred cCCCEEeccCCCCCCcchHH
Q 038165 405 VSLHHLDLSSADITGLPQEL 424 (731)
Q Consensus 405 ~~L~~L~L~~~~l~~lp~~i 424 (731)
.+|++|+|++|+|+.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45566666666666665543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.11 E-value=0.29 Score=29.06 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=11.7
Q ss_pred cCCCEEeccCCCCCCcchHH
Q 038165 405 VSLHHLDLSSADITGLPQEL 424 (731)
Q Consensus 405 ~~L~~L~L~~~~l~~lp~~i 424 (731)
.+|++|+|++|+|+.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45566666666666665543
No 82
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.26 E-value=6.1 Score=47.76 Aligned_cols=145 Identities=12% Similarity=0.170 Sum_probs=89.0
Q ss_pred cCCcccccccccccccccccccHHHHHHHHHHHcCCchHHHHHHHHHhcCCCChhHHHHHHHHhhcccCCCCCChHHHHh
Q 038165 142 KAPDGAAIELPLAQTIVGQELLVDRLAETLARECGGLPLALKTVGRAMKSQRKVGDWKRAIHKMTTSASKFSGMKEEVFS 221 (731)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~ 221 (731)
++..+++.+++... .|... =.+...++.+.|+|.|+++..++..+....... ......+..... ..+.+
T Consensus 185 ~f~~~e~~~ll~~~--~~~~~-~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~ 253 (903)
T PRK04841 185 AFDHQEAQQFFDQR--LSSPI-EAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAGINA------SHLSD 253 (903)
T ss_pred CCCHHHHHHHHHhc--cCCCC-CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcCCCc------hhHHH
Confidence 45555665555322 11111 145678899999999999999887775522100 111111111011 14555
Q ss_pred hhhhh-ccCCChhhHHHHHhHhcccCCCcccChhhHHHHHHHcCccccchhhhhHHHHHHHhhccccc---CCCccchhh
Q 038165 222 RLKFS-YDSLSTDELRSCLLYCCLYPEDYEIPRRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEE---GDDHVKMHD 297 (731)
Q Consensus 222 ~L~~s-y~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~w~a~g~~~~~~~g~~~~~~L~~~sli~~~---~~~~~~mhd 297 (731)
.+.-. |+.||+ ..+..++..|+++. ++. .+...-.+ . +.+...+++|.+.+++... ....|..|+
T Consensus 254 ~l~~~v~~~l~~-~~~~~l~~~a~~~~---~~~-~l~~~l~~-----~-~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~ 322 (903)
T PRK04841 254 YLVEEVLDNVDL-ETRHFLLRCSVLRS---MND-ALIVRVTG-----E-ENGQMRLEELERQGLFIQRMDDSGEWFRYHP 322 (903)
T ss_pred HHHHHHHhcCCH-HHHHHHHHhccccc---CCH-HHHHHHcC-----C-CcHHHHHHHHHHCCCeeEeecCCCCEEehhH
Confidence 54433 789999 89999999999873 442 33332221 1 4567889999999997542 234688999
Q ss_pred HHHHHHHHHhh
Q 038165 298 MIREMSLWIAC 308 (731)
Q Consensus 298 li~dl~~~i~~ 308 (731)
+++++.+.-..
T Consensus 323 L~r~~l~~~l~ 333 (903)
T PRK04841 323 LFASFLRHRCQ 333 (903)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.54 E-value=0.8 Score=27.18 Aligned_cols=17 Identities=18% Similarity=0.729 Sum_probs=12.7
Q ss_pred CCCccEEeeccccCCCC
Q 038165 656 FPKLKKIEVRECRQLKK 672 (731)
Q Consensus 656 lp~L~~L~l~~C~~L~~ 672 (731)
+|+|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36788888888887764
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.86 E-value=1.2 Score=26.32 Aligned_cols=18 Identities=56% Similarity=0.822 Sum_probs=9.3
Q ss_pred CCccEEEcCCCCCCCcccc
Q 038165 381 SSLRVLSLSENFHLSTLPS 399 (731)
Q Consensus 381 ~~L~~L~L~~~~~~~~lP~ 399 (731)
++|++|+|++| .+..+|.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 34555555555 5555544
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.86 E-value=1.2 Score=26.32 Aligned_cols=18 Identities=56% Similarity=0.822 Sum_probs=9.3
Q ss_pred CCccEEEcCCCCCCCcccc
Q 038165 381 SSLRVLSLSENFHLSTLPS 399 (731)
Q Consensus 381 ~~L~~L~L~~~~~~~~lP~ 399 (731)
++|++|+|++| .+..+|.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 34555555555 5555544
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.59 E-value=2.2 Score=25.32 Aligned_cols=17 Identities=41% Similarity=0.743 Sum_probs=10.7
Q ss_pred CCCEEeccCCCCCCcch
Q 038165 406 SLHHLDLSSADITGLPQ 422 (731)
Q Consensus 406 ~L~~L~L~~~~l~~lp~ 422 (731)
+|++|++++|+++.||+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56666666666666664
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.10 E-value=8.7 Score=22.86 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=7.9
Q ss_pred cCCCEEeccCCCCCC
Q 038165 405 VSLHHLDLSSADITG 419 (731)
Q Consensus 405 ~~L~~L~L~~~~l~~ 419 (731)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455555555555443
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=52.58 E-value=7.1 Score=22.41 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=5.4
Q ss_pred cCCCEEeccCCCC
Q 038165 405 VSLHHLDLSSADI 417 (731)
Q Consensus 405 ~~L~~L~L~~~~l 417 (731)
++|++|+|++|+|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3455555555544
No 89
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=41.15 E-value=12 Score=20.73 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=12.7
Q ss_pred CCCEEeccCCCCCCcchH
Q 038165 406 SLHHLDLSSADITGLPQE 423 (731)
Q Consensus 406 ~L~~L~L~~~~l~~lp~~ 423 (731)
+|..|++.+++++.|+++
T Consensus 1 ~LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEG 18 (20)
T ss_pred CcEEEECCCCChHHhcCc
Confidence 466777877777777654
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=36.63 E-value=25 Score=21.18 Aligned_cols=14 Identities=43% Similarity=0.551 Sum_probs=8.0
Q ss_pred cCCCEEeccCCCCC
Q 038165 405 VSLHHLDLSSADIT 418 (731)
Q Consensus 405 ~~L~~L~L~~~~l~ 418 (731)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666553
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.44 E-value=36 Score=37.14 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=9.7
Q ss_pred cceEEEeecCCcccCCC
Q 038165 336 GAKRVSLMGNGIESLSE 352 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~ 352 (731)
.+..+++++|.+..+..
T Consensus 219 ~i~sl~lsnNrL~~Ld~ 235 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDA 235 (585)
T ss_pred ceeeeecccchhhchhh
Confidence 55556666666555443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.30 E-value=20 Score=39.04 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=16.6
Q ss_pred cCCccEEEEeccCC---CCCchhh-ccCCccEEeeecc
Q 038165 573 FRSLNTVVLRSCRG---KDLTWLV-FVQNLKVLYIGFC 606 (731)
Q Consensus 573 l~~L~~L~L~~c~~---~~~~~l~-~l~~L~~L~L~~~ 606 (731)
++.+..+.|++|+. ..+..+. ..|+|+.|+|+++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 45555555555554 2222222 4455666666555
No 93
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=31.15 E-value=1.3 Score=48.43 Aligned_cols=80 Identities=23% Similarity=0.206 Sum_probs=39.3
Q ss_pred ceEEEeecCCcccC------CCCCCCCCeeEEEcccCCccccChh----hhcCC-CCccEEEcCCCCCCC-----ccccc
Q 038165 337 AKRVSLMGNGIESL------SEIPTCPRLVTLLVDENPIVEITDG----FFQSM-SSLRVLSLSENFHLS-----TLPSG 400 (731)
Q Consensus 337 l~~l~l~~~~~~~l------~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~l-~~L~~L~L~~~~~~~-----~lP~~ 400 (731)
+.++.+.+|.+..- ..+...+.|..|++.+|.+...... .+... ..|++|++..| .+. .++..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHH
Confidence 45555555555432 2235566666677777765421111 11222 34555666555 332 23334
Q ss_pred ccCCcCCCEEeccCCCC
Q 038165 401 ISSLVSLHHLDLSSADI 417 (731)
Q Consensus 401 i~~l~~L~~L~L~~~~l 417 (731)
+....+|+.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 44455666666666644
No 94
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=24.38 E-value=1e+02 Score=32.02 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhcCCCChhHHHHHHHHhhcccCCCCCChHHHHhhhhhhccCCChhhHHHHHh-Hhc
Q 038165 165 DRLAETLARECGGLPLALKTVGRAMKSQRKVGDWKRAIHKMTTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLL-YCC 243 (731)
Q Consensus 165 ~~l~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~~k~cfl-~~a 243 (731)
.+....|++.|+|.|-.+..+...+. .|... . ....-. ...-......+...|.+|++ ..+..+. .+.
T Consensus 202 ~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~--~-~~~~I~-~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~ 270 (328)
T PRK00080 202 EEGALEIARRSRGTPRIANRLLRRVR------DFAQV--K-GDGVIT-KEIADKALDMLGVDELGLDE-MDRKYLRTIIE 270 (328)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHH--c-CCCCCC-HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHH
Confidence 45688999999999965555544321 22211 0 000000 00111455666778889988 5566554 566
Q ss_pred ccCCCcccChhhHHHHHHHcCccccchhhhhHHH-HHHHhhccccc
Q 038165 244 LYPEDYEIPRRELIDYWISEGFVYDFDDGCDFID-DLLQACLLEEE 288 (731)
Q Consensus 244 ~fp~~~~~~~~~li~~w~a~g~~~~~~~g~~~~~-~L~~~sli~~~ 288 (731)
.|+.+ .+..+.+...+ |. ..+..+..++ .|++.+|++..
T Consensus 271 ~~~~~-~~~~~~~a~~l---g~--~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 271 KFGGG-PVGLDTLAAAL---GE--ERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HcCCC-ceeHHHHHHHH---CC--CcchHHHHhhHHHHHcCCcccC
Confidence 66655 45554443322 11 1144445566 78888888754
No 95
>PHA01750 hypothetical protein
Probab=23.37 E-value=1.7e+02 Score=21.65 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=16.4
Q ss_pred hchHHhHHHHHHHHHHhhhhhHHHHHHHH
Q 038165 29 WGLEKNLEGLETELHKLTRTRDDLKTRVE 57 (731)
Q Consensus 29 ~~~~~~l~~l~~~~~~l~~~~~~l~~~~~ 57 (731)
+.+++.++.|..++++++..++++.+++.
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~ 66 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVE 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455555566666666655666555553
No 96
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.76 E-value=1.8e+02 Score=19.88 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=18.5
Q ss_pred hchHHhHHHHHHHHHHhhhhhHHHHH
Q 038165 29 WGLEKNLEGLETELHKLTRTRDDLKT 54 (731)
Q Consensus 29 ~~~~~~l~~l~~~~~~l~~~~~~l~~ 54 (731)
.++.+.++.+..++..|+.+|..+..
T Consensus 15 d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 15 DNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888777777665543
Done!