Query 038165
Match_columns 731
No_of_seqs 515 out of 4798
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 13:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1.1E-29 3.8E-34 282.7 -7.3 181 116-310 265-471 (549)
2 4fmz_A Internalin; leucine ric 99.9 8.7E-26 3E-30 237.9 19.8 307 328-690 37-343 (347)
3 4fmz_A Internalin; leucine ric 99.9 4.4E-24 1.5E-28 224.9 23.0 298 316-668 47-344 (347)
4 3o6n_A APL1; leucine-rich repe 99.9 9.4E-24 3.2E-28 226.0 20.7 301 333-690 43-349 (390)
5 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-23 4.7E-28 238.7 23.1 149 318-470 16-170 (606)
6 4ecn_A Leucine-rich repeat pro 99.9 5.1E-24 1.8E-28 246.2 19.8 323 330-691 443-838 (876)
7 1o6v_A Internalin A; bacterial 99.9 2.4E-23 8.2E-28 228.2 24.2 312 318-690 51-385 (466)
8 3v47_A TOLL-like receptor 5B a 99.9 8.7E-24 3E-28 231.4 20.6 345 318-690 15-405 (455)
9 2z63_A TOLL-like receptor 4, v 99.9 2.1E-23 7.1E-28 235.4 22.9 144 321-468 15-164 (570)
10 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-23 9.3E-28 233.3 23.3 146 321-468 13-163 (549)
11 1o6v_A Internalin A; bacterial 99.9 3E-23 1E-27 227.5 22.2 311 332-690 43-363 (466)
12 3rgz_A Protein brassinosteroid 99.9 6.7E-24 2.3E-28 246.9 17.9 323 331-690 196-548 (768)
13 2id5_A Lingo-1, leucine rich r 99.9 5.7E-23 2E-27 226.3 24.4 286 322-675 20-313 (477)
14 4eco_A Uncharacterized protein 99.9 6.9E-24 2.3E-28 241.1 17.4 338 331-691 202-598 (636)
15 3t6q_A CD180 antigen; protein- 99.9 7.4E-23 2.5E-27 232.6 24.6 344 320-690 19-435 (606)
16 2id5_A Lingo-1, leucine rich r 99.9 8.6E-23 3E-27 224.8 24.1 289 316-644 35-331 (477)
17 2z63_A TOLL-like receptor 4, v 99.9 2.3E-23 7.7E-28 235.1 19.7 353 318-690 33-528 (570)
18 2z7x_B TOLL-like receptor 1, v 99.9 6.4E-23 2.2E-27 228.5 22.6 351 318-690 5-478 (520)
19 3t6q_A CD180 antigen; protein- 99.9 6.1E-23 2.1E-27 233.3 22.5 264 331-607 125-460 (606)
20 3oja_B Anopheles plasmodium-re 99.9 4.3E-23 1.5E-27 233.3 19.6 301 333-690 49-355 (597)
21 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-22 4.1E-27 226.4 22.1 123 338-466 3-128 (520)
22 3o6n_A APL1; leucine-rich repe 99.9 6.7E-23 2.3E-27 219.4 19.2 296 316-668 48-350 (390)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.9E-22 1.3E-26 224.1 26.1 141 317-465 35-181 (562)
24 4eco_A Uncharacterized protein 99.9 2.6E-23 9E-28 236.3 16.6 311 353-690 202-576 (636)
25 3vq2_A TLR4, TOLL-like recepto 99.9 1.8E-22 6.2E-27 229.4 23.0 126 318-445 37-169 (606)
26 4ecn_A Leucine-rich repeat pro 99.9 2.5E-23 8.6E-28 240.5 15.8 309 353-690 444-816 (876)
27 3v47_A TOLL-like receptor 5B a 99.9 1.2E-22 4.1E-27 222.4 20.2 321 318-674 35-412 (455)
28 3bz5_A Internalin-J, INLJ; leu 99.9 5.1E-23 1.7E-27 223.8 17.0 266 331-650 38-303 (457)
29 3oja_B Anopheles plasmodium-re 99.9 8.2E-23 2.8E-27 230.9 18.8 296 316-668 54-356 (597)
30 2ft3_A Biglycan; proteoglycan, 99.9 6.9E-23 2.4E-27 214.1 16.6 239 336-606 34-274 (332)
31 1ziw_A TOLL-like receptor 3; i 99.9 3.6E-22 1.2E-26 230.1 23.7 274 318-606 9-306 (680)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.2E-22 2.1E-26 222.5 25.0 127 336-467 32-160 (562)
33 3rgz_A Protein brassinosteroid 99.9 5.2E-23 1.8E-27 239.4 16.3 323 332-690 175-524 (768)
34 1xku_A Decorin; proteoglycan, 99.9 3.5E-22 1.2E-26 208.6 20.6 240 336-606 32-273 (330)
35 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-21 8.3E-26 227.8 29.7 148 317-468 8-163 (844)
36 4fcg_A Uncharacterized protein 99.9 2.1E-22 7.3E-27 209.4 16.6 101 573-686 205-307 (328)
37 4fcg_A Uncharacterized protein 99.9 3.4E-22 1.1E-26 207.9 17.5 228 357-666 81-310 (328)
38 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-21 4.2E-26 219.8 19.2 135 330-466 45-185 (549)
39 1ziw_A TOLL-like receptor 3; i 99.9 2.7E-21 9.3E-26 222.8 22.4 244 338-607 7-283 (680)
40 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-21 8.1E-26 210.7 20.6 308 317-673 46-354 (457)
41 1ogq_A PGIP-2, polygalacturona 99.9 4.7E-22 1.6E-26 205.5 13.0 128 336-465 51-186 (313)
42 3j0a_A TOLL-like receptor 5; m 99.9 7.8E-21 2.7E-25 223.5 24.2 309 338-690 7-391 (844)
43 3sfz_A APAF-1, apoptotic pepti 99.9 7.2E-24 2.5E-28 261.6 -4.0 187 115-310 256-452 (1249)
44 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-20 3.9E-25 197.2 17.0 284 357-690 33-330 (332)
45 1xku_A Decorin; proteoglycan, 99.8 5.3E-20 1.8E-24 192.1 21.9 244 357-675 31-280 (330)
46 1vt4_I APAF-1 related killer D 99.8 2E-23 6.9E-28 235.0 -4.9 138 142-304 297-437 (1221)
47 2z80_A TOLL-like receptor 2, v 99.8 3.6E-20 1.2E-24 195.3 19.3 269 339-668 35-312 (353)
48 2z66_A Variable lymphocyte rec 99.8 2.4E-20 8.3E-25 192.4 17.6 125 339-466 11-139 (306)
49 2z80_A TOLL-like receptor 2, v 99.8 5.9E-21 2E-25 201.3 12.8 265 318-644 36-312 (353)
50 1ogq_A PGIP-2, polygalacturona 99.8 2.1E-20 7.2E-25 193.1 12.5 255 357-676 50-310 (313)
51 3zyi_A Leucine-rich repeat-con 99.8 2.1E-19 7.1E-24 196.1 19.8 233 322-607 63-301 (452)
52 3zyj_A Leucine-rich repeat-con 99.8 2.3E-19 8E-24 195.0 20.0 234 321-607 51-290 (440)
53 3g06_A SSPH2 (leucine-rich rep 99.8 5.7E-19 1.9E-23 197.6 23.1 255 336-668 41-295 (622)
54 2z66_A Variable lymphocyte rec 99.8 2.6E-19 9E-24 184.6 18.7 144 320-466 14-163 (306)
55 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-18 3.7E-23 199.5 25.6 145 322-470 40-190 (635)
56 3zyi_A Leucine-rich repeat-con 99.8 5.4E-19 1.8E-23 192.8 21.9 243 336-644 55-301 (452)
57 1jl5_A Outer protein YOPM; leu 99.8 8.5E-19 2.9E-23 190.4 23.1 118 335-466 111-228 (454)
58 3zyj_A Leucine-rich repeat-con 99.8 7E-19 2.4E-23 191.2 22.4 243 336-644 44-290 (440)
59 4g8a_A TOLL-like receptor 4; l 99.8 4.1E-19 1.4E-23 203.0 21.1 348 316-688 55-575 (635)
60 1jl5_A Outer protein YOPM; leu 99.8 2.4E-18 8.2E-23 186.8 24.5 136 317-468 75-210 (454)
61 3o53_A Protein LRIM1, AGAP0063 99.8 2.5E-20 8.4E-25 193.2 7.6 250 354-678 31-283 (317)
62 1ozn_A Reticulon 4 receptor; N 99.8 1E-18 3.5E-23 178.2 18.1 218 338-607 14-236 (285)
63 3g06_A SSPH2 (leucine-rich rep 99.8 5.2E-18 1.8E-22 189.8 24.3 253 316-644 43-295 (622)
64 3o53_A Protein LRIM1, AGAP0063 99.8 7E-20 2.4E-24 189.7 7.1 263 334-671 33-300 (317)
65 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-18 3.8E-23 177.9 15.1 215 321-586 19-237 (285)
66 3oja_A Leucine-rich immune mol 99.8 1.4E-18 4.8E-23 190.6 15.7 243 354-671 31-276 (487)
67 1z6t_A APAF-1, apoptotic prote 99.8 3.9E-21 1.3E-25 217.3 -5.8 183 116-307 257-449 (591)
68 1p9a_G Platelet glycoprotein I 99.8 1E-17 3.5E-22 170.7 18.6 133 331-467 6-138 (290)
69 3oja_A Leucine-rich immune mol 99.8 8.4E-19 2.9E-23 192.3 9.4 238 334-646 33-275 (487)
70 1h6u_A Internalin H; cell adhe 99.8 1.3E-17 4.5E-22 171.6 17.1 125 333-465 39-163 (308)
71 2o6q_A Variable lymphocyte rec 99.7 3.7E-17 1.3E-21 165.0 18.9 128 336-466 17-146 (270)
72 3rfs_A Internalin B, repeat mo 99.7 1.5E-17 5.1E-22 168.1 14.1 127 333-463 39-167 (272)
73 3rfs_A Internalin B, repeat mo 99.7 2E-17 7E-22 167.1 14.4 121 341-466 25-146 (272)
74 2xwt_C Thyrotropin receptor; s 99.7 2.5E-17 8.7E-22 163.0 13.8 112 347-463 23-140 (239)
75 2z62_A TOLL-like receptor 4, v 99.7 1.1E-16 3.9E-21 162.2 17.9 107 358-466 29-137 (276)
76 2z62_A TOLL-like receptor 4, v 99.7 1.2E-16 4.1E-21 162.0 17.8 142 322-467 16-163 (276)
77 1h6u_A Internalin H; cell adhe 99.7 5.5E-17 1.9E-21 166.9 15.5 197 347-606 31-227 (308)
78 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.6E-21 160.9 18.0 104 358-466 17-122 (270)
79 2xwt_C Thyrotropin receptor; s 99.7 5.2E-17 1.8E-21 160.8 14.4 93 369-466 23-118 (239)
80 1wwl_A Monocyte differentiatio 99.7 1.8E-18 6.3E-23 178.6 3.0 240 335-643 43-306 (312)
81 1p9a_G Platelet glycoprotein I 99.7 2.7E-16 9.4E-21 160.1 16.8 198 353-606 6-205 (290)
82 1z7x_W Ribonuclease inhibitor; 99.7 9.5E-19 3.2E-23 191.7 -3.6 309 334-668 55-409 (461)
83 3ogk_B Coronatine-insensitive 99.7 1.7E-17 5.8E-22 187.8 4.5 318 334-691 163-524 (592)
84 1wwl_A Monocyte differentiatio 99.7 9.5E-18 3.2E-22 173.2 1.9 240 355-668 41-307 (312)
85 4ay9_X Follicle-stimulating ho 99.7 1E-15 3.5E-20 160.6 16.8 235 361-666 13-255 (350)
86 4ay9_X Follicle-stimulating ho 99.6 2.4E-15 8.2E-20 157.8 17.5 239 338-642 12-255 (350)
87 1h6t_A Internalin B; cell adhe 99.6 1.2E-15 4E-20 155.6 13.6 102 355-464 44-145 (291)
88 3m19_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 148.2 16.8 128 336-466 15-144 (251)
89 1z7x_W Ribonuclease inhibitor; 99.6 4.9E-17 1.7E-21 178.0 3.0 329 332-690 25-408 (461)
90 3ogk_B Coronatine-insensitive 99.6 2.2E-16 7.6E-21 178.7 8.1 306 333-673 190-528 (592)
91 1h6t_A Internalin B; cell adhe 99.6 3E-15 1E-19 152.5 13.9 130 329-466 40-169 (291)
92 2ast_B S-phase kinase-associat 99.6 4.7E-16 1.6E-20 162.6 8.0 244 359-674 49-309 (336)
93 1m9s_A Internalin B; cell inva 99.6 4.2E-15 1.4E-19 166.1 13.2 34 573-606 174-207 (605)
94 3m19_A Variable lymphocyte rec 99.6 1.6E-14 5.5E-19 143.9 15.5 104 358-466 15-120 (251)
95 4glp_A Monocyte differentiatio 99.6 3.4E-15 1.1E-19 153.9 10.3 221 335-606 64-304 (310)
96 2ca6_A RAN GTPase-activating p 99.6 4.8E-16 1.6E-20 165.7 3.9 110 354-466 29-172 (386)
97 1m9s_A Internalin B; cell inva 99.6 6.8E-15 2.3E-19 164.4 12.8 178 329-559 37-214 (605)
98 2ast_B S-phase kinase-associat 99.6 3.4E-16 1.1E-20 163.6 1.5 239 381-690 47-303 (336)
99 2o6s_A Variable lymphocyte rec 99.6 1.8E-14 6.1E-19 139.1 12.3 126 338-466 10-137 (208)
100 2ca6_A RAN GTPase-activating p 99.5 9.2E-16 3.1E-20 163.6 2.9 94 369-466 21-135 (386)
101 2p1m_B Transport inhibitor res 99.5 5.3E-16 1.8E-20 175.6 0.9 80 334-414 155-244 (594)
102 3goz_A Leucine-rich repeat-con 99.5 6.4E-15 2.2E-19 155.4 6.9 258 340-644 3-295 (362)
103 3cvr_A Invasion plasmid antige 99.5 1.6E-13 5.5E-18 151.5 18.3 182 336-608 60-242 (571)
104 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 135.5 15.1 143 321-466 27-172 (229)
105 4glp_A Monocyte differentiatio 99.5 2.8E-14 9.6E-19 147.0 11.0 108 356-466 63-182 (310)
106 4ezg_A Putative uncharacterize 99.5 5.1E-14 1.7E-18 134.5 11.8 131 332-467 41-173 (197)
107 2v9t_B SLIT homolog 2 protein 99.5 1.6E-13 5.3E-18 133.5 14.1 126 338-466 14-141 (220)
108 2o6s_A Variable lymphocyte rec 99.5 3.8E-13 1.3E-17 129.8 15.8 143 323-468 17-163 (208)
109 2v9t_B SLIT homolog 2 protein 99.5 2.5E-13 8.6E-18 132.0 14.2 146 318-466 16-165 (220)
110 4ezg_A Putative uncharacterize 99.5 2E-13 6.8E-18 130.4 13.0 146 316-466 47-194 (197)
111 1xeu_A Internalin C; cellular 99.5 2.6E-14 8.9E-19 143.1 6.6 117 340-465 24-140 (263)
112 3cvr_A Invasion plasmid antige 99.5 3.3E-13 1.1E-17 149.1 15.7 76 541-645 159-242 (571)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 4.1E-13 1.4E-17 130.5 14.4 126 338-466 14-142 (220)
114 1xeu_A Internalin C; cellular 99.5 3.7E-13 1.3E-17 134.8 13.8 132 326-466 32-163 (263)
115 3goz_A Leucine-rich repeat-con 99.5 2.1E-14 7.3E-19 151.4 4.8 229 335-607 22-295 (362)
116 3e6j_A Variable lymphocyte rec 99.5 5.8E-13 2E-17 130.4 14.6 125 338-466 22-148 (229)
117 2v70_A SLIT-2, SLIT homolog 2 99.4 5.1E-13 1.7E-17 129.9 13.1 145 319-466 17-166 (220)
118 2p1m_B Transport inhibitor res 99.4 7.6E-15 2.6E-19 166.1 -0.7 300 333-669 182-518 (594)
119 2xot_A Amphoterin-induced prot 99.4 4.7E-13 1.6E-17 140.9 12.4 127 338-467 21-150 (361)
120 2xot_A Amphoterin-induced prot 99.4 4.6E-13 1.6E-17 141.0 11.2 102 360-466 21-125 (361)
121 2ell_A Acidic leucine-rich nuc 99.4 3.6E-13 1.2E-17 125.0 7.3 130 335-468 24-162 (168)
122 1a9n_A U2A', U2A'; complex (nu 99.4 4.7E-13 1.6E-17 125.2 6.7 125 335-463 19-150 (176)
123 2je0_A Acidic leucine-rich nuc 99.4 7.1E-13 2.4E-17 120.3 7.4 122 336-461 18-148 (149)
124 2o6r_A Variable lymphocyte rec 99.3 6.2E-12 2.1E-16 117.7 12.9 128 337-467 9-138 (177)
125 1w8a_A SLIT protein; signaling 99.3 5.8E-12 2E-16 119.5 11.1 127 338-467 11-140 (192)
126 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.1E-16 117.3 12.9 125 338-466 13-139 (193)
127 2je0_A Acidic leucine-rich nuc 99.3 7.1E-12 2.4E-16 113.6 9.1 110 354-468 14-128 (149)
128 2ell_A Acidic leucine-rich nuc 99.3 4.6E-11 1.6E-15 110.7 14.5 131 315-447 26-165 (168)
129 4b8c_D Glucose-repressible alc 99.3 5.4E-12 1.8E-16 144.7 9.8 89 375-466 218-306 (727)
130 4b8c_D Glucose-repressible alc 99.2 8.1E-12 2.8E-16 143.3 9.2 117 352-472 219-335 (727)
131 1a9n_A U2A', U2A'; complex (nu 99.2 1.7E-11 5.7E-16 114.6 9.7 124 315-439 21-151 (176)
132 2wfh_A SLIT homolog 2 protein 99.2 5.8E-11 2E-15 112.6 12.6 79 384-466 13-91 (193)
133 1dce_A Protein (RAB geranylger 99.2 2.5E-11 8.7E-16 134.7 11.6 105 358-468 442-548 (567)
134 1w8a_A SLIT protein; signaling 99.2 3.3E-11 1.1E-15 114.3 10.6 101 360-465 11-114 (192)
135 1dce_A Protein (RAB geranylger 99.2 2.5E-11 8.5E-16 134.8 11.1 79 383-466 443-521 (567)
136 2r9u_A Variable lymphocyte rec 99.1 1.9E-10 6.5E-15 106.9 9.7 103 360-467 15-119 (174)
137 1ds9_A Outer arm dynein; leuci 99.1 3.4E-12 1.2E-16 121.9 -2.3 126 336-466 24-153 (198)
138 3g39_A Variable lymphocyte rec 99.1 2.3E-10 7.8E-15 106.0 9.6 103 359-466 11-115 (170)
139 2o6r_A Variable lymphocyte rec 99.1 5.5E-10 1.9E-14 104.3 12.0 117 322-440 16-136 (177)
140 2r9u_A Variable lymphocyte rec 99.1 6.5E-10 2.2E-14 103.3 10.9 106 338-446 15-122 (174)
141 3sb4_A Hypothetical leucine ri 99.0 6.8E-10 2.3E-14 115.1 11.2 285 334-663 24-327 (329)
142 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.8E-14 101.3 10.0 101 337-439 11-113 (170)
143 1ds9_A Outer arm dynein; leuci 99.0 1.4E-11 4.9E-16 117.5 -3.1 126 358-503 24-151 (198)
144 3sb4_A Hypothetical leucine ri 99.0 1.8E-09 6.2E-14 111.8 11.6 262 334-640 48-328 (329)
145 4fdw_A Leucine rich hypothetic 98.9 8.6E-08 2.9E-12 101.5 19.9 104 352-462 131-235 (401)
146 2ifg_A High affinity nerve gro 98.7 1.9E-08 6.5E-13 105.0 9.6 100 362-466 13-116 (347)
147 2ifg_A High affinity nerve gro 98.7 3.3E-08 1.1E-12 103.2 9.3 100 339-439 12-114 (347)
148 4fdw_A Leucine rich hypothetic 98.7 6.5E-07 2.2E-11 94.8 19.2 119 336-462 136-257 (401)
149 3un9_A NLR family member X1; l 98.4 4.9E-08 1.7E-12 102.4 2.3 16 541-556 238-253 (372)
150 3un9_A NLR family member X1; l 98.3 1E-07 3.4E-12 100.0 1.3 128 336-466 102-252 (372)
151 4fs7_A Uncharacterized protein 98.2 1.9E-05 6.6E-10 83.6 14.7 107 352-463 66-195 (394)
152 3e4g_A ATP synthase subunit S, 98.1 6.8E-07 2.3E-11 81.4 2.3 86 575-672 62-154 (176)
153 2ra8_A Uncharacterized protein 98.1 2.5E-06 8.6E-11 88.5 6.2 44 419-466 163-206 (362)
154 2ra8_A Uncharacterized protein 98.1 4.8E-06 1.6E-10 86.4 7.5 89 375-466 166-265 (362)
155 3e4g_A ATP synthase subunit S, 98.0 2.3E-06 7.9E-11 77.8 2.5 87 542-648 61-154 (176)
156 4fs7_A Uncharacterized protein 97.8 0.00023 7.7E-09 75.3 15.2 62 373-437 154-217 (394)
157 4gt6_A Cell surface protein; l 97.8 0.00046 1.6E-08 72.9 17.3 31 359-390 66-96 (394)
158 3rw6_A Nuclear RNA export fact 97.8 5.2E-06 1.8E-10 81.6 1.1 81 378-460 167-258 (267)
159 1io0_A Tropomodulin; LRR prote 97.7 2.8E-05 9.5E-10 72.5 4.5 110 354-466 33-164 (185)
160 3rw6_A Nuclear RNA export fact 97.5 0.00013 4.3E-09 71.7 7.2 80 354-435 167-258 (267)
161 4gt6_A Cell surface protein; l 97.5 0.0015 5.1E-08 68.9 15.1 281 336-666 65-366 (394)
162 1io0_A Tropomodulin; LRR prote 97.4 7.6E-05 2.6E-09 69.5 4.2 104 335-439 36-162 (185)
163 4h09_A Hypothetical leucine ri 97.3 0.011 3.6E-07 61.9 18.7 123 333-463 44-168 (379)
164 4h09_A Hypothetical leucine ri 95.6 0.019 6.4E-07 60.0 7.5 104 353-461 236-341 (379)
165 3rfe_A Platelet glycoprotein I 95.0 0.034 1.2E-06 47.8 6.0 33 406-438 32-65 (130)
166 3rfe_A Platelet glycoprotein I 94.7 0.027 9.4E-07 48.4 4.5 56 408-466 11-68 (130)
167 3qfl_A MLA10; coiled-coil, (CC 90.8 0.87 3E-05 37.8 8.0 78 13-97 6-83 (115)
168 1pgv_A TMD-1, tropomodulin TMD 89.1 0.33 1.1E-05 44.7 4.4 14 405-418 98-111 (197)
169 1pgv_A TMD-1, tropomodulin TMD 88.1 0.71 2.4E-05 42.5 5.9 86 377-464 37-137 (197)
170 2qen_A Walker-type ATPase; unk 85.5 2.9 9.8E-05 42.3 9.6 148 137-303 197-348 (350)
171 2fna_A Conserved hypothetical 83.2 4.1 0.00014 41.2 9.6 146 137-302 203-355 (357)
172 1w5s_A Origin recognition comp 58.4 23 0.00077 36.5 8.2 138 138-288 210-371 (412)
173 1hqc_A RUVB; extended AAA-ATPa 42.8 36 0.0012 33.5 6.4 25 165-189 190-214 (324)
174 2lz0_A Uncharacterized protein 29.5 48 0.0016 26.3 3.7 22 369-390 8-29 (100)
175 2lz0_A Uncharacterized protein 20.7 66 0.0023 25.4 3.0 40 351-391 14-53 (100)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.94 E-value=1.1e-29 Score=282.69 Aligned_cols=181 Identities=12% Similarity=0.111 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHHHhhCC-CcceEeeecCCccccccccccccccccc--ccHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038165 116 GRKVVMLTDRVINLRKDG-EKIEVVVEKAPDGAAIELPLAQTIVGQE--LLVDRLAETLARECGGLPLALKTVGRAMKSQ 192 (731)
Q Consensus 116 gsrv~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~l~~~iv~~c~GlPLal~~~g~~L~~~ 192 (731)
|++|++|||+..+....+ ....+...++..+++.++|...+ |+.. ..+.+++++|+++|+|+||||+++|+.|+.+
T Consensus 265 gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a-~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~ 343 (549)
T 2a5y_B 265 RLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYG-MPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 343 (549)
T ss_dssp TCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTS-CCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS
T ss_pred CCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHh-cCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc
Confidence 455555555555554443 22456777888999999999998 7765 4488999999999999999999999999773
Q ss_pred CChhHHHHHHHHhhcccCCCCCChHHHHhhhhhhccCCChhhHHHHHh-----------HhcccCCCcccChhhHHHHHH
Q 038165 193 RKVGDWKRAIHKMTTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLL-----------YCCLYPEDYEIPRRELIDYWI 261 (731)
Q Consensus 193 ~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~~k~cfl-----------~~a~fp~~~~~~~~~li~~w~ 261 (731)
+ |+.+ +.+....+... ..+|..+|++||++||. ++|.||+ |||+||+++.|+ ++.|+
T Consensus 344 -~---w~~~-~~l~~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~ 411 (549)
T 2a5y_B 344 -T---FEKM-AQLNNKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWS 411 (549)
T ss_dssp -S---HHHH-HHHHHHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHH
T ss_pred -h---HHHH-HHhHHHhhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeee
Confidence 3 5543 44444322211 12688999999999999 9999999 999999999998 89999
Q ss_pred Hc--Cccccc-------hhhhhHHHHHHHhhccccc---CCCccchhhHHHHHHHHHhhcc
Q 038165 262 SE--GFVYDF-------DDGCDFIDDLLQACLLEEE---GDDHVKMHDMIREMSLWIACTV 310 (731)
Q Consensus 262 a~--g~~~~~-------~~g~~~~~~L~~~sli~~~---~~~~~~mhdli~dl~~~i~~~~ 310 (731)
|+ ||+... +.++ ||++|+++||++.. ...+|+|||++|++|+++++++
T Consensus 412 a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 412 CVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred eeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 99 988642 4555 99999999999986 2457999999999999998764
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=8.7e-26 Score=237.92 Aligned_cols=307 Identities=19% Similarity=0.224 Sum_probs=237.9
Q ss_pred CccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCC
Q 038165 328 APKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSL 407 (731)
Q Consensus 328 ~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L 407 (731)
......+++++.+++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .+..+++|
T Consensus 37 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L 112 (347)
T 4fmz_A 37 VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNL 112 (347)
T ss_dssp EECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTC
T ss_pred cccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcC
Confidence 34445678999999999999999989999999999999999888877 889999999999999 888877 68999999
Q ss_pred CEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhh
Q 038165 408 HHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKE 487 (731)
Q Consensus 408 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 487 (731)
++|++++|.+..+|. +..+++|++|++++|..+..++. +..+++|++|++++|.+... + .
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-------------~----~ 172 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV-------------T----P 172 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC-------------G----G
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc-------------h----h
Confidence 999999999999887 88999999999999977777666 89999999999999987642 1 1
Q ss_pred hccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCcccccc
Q 038165 488 LLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKK 567 (731)
Q Consensus 488 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 567 (731)
+..+++|+.+++..+....... ....+.|+.|++++|......+ +..+++|++|++++|.+..++. .
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~----- 239 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L----- 239 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G-----
T ss_pred hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h-----
Confidence 5566777777776544332222 2234578899999887544433 7888999999999998877543 1
Q ss_pred ccccccCCccEEEEeccCCCCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeecccccccc
Q 038165 568 LFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLK 647 (731)
Q Consensus 568 ~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 647 (731)
..+++|+.|++++|....++.+..+++|+.|++++| .+..+ ..+..+++|++|++++|.--.
T Consensus 240 ---~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 240 ---ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDI--------------SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp ---TTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGGGCTTCSEEECCSSCCCG
T ss_pred ---hcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC-ccCCC--------------hhhcCCCCCCEEECcCCcCCC
Confidence 347899999999998855678889999999999988 34433 136688999999999875333
Q ss_pred ccCCCCcCCCCccEEeeccccCCCCCCCCCCCCCCcceEEecc
Q 038165 648 SVYPNPLPFPKLKKIEVRECRQLKKLPLNSSSAKERRVVIEGS 690 (731)
Q Consensus 648 ~l~~~~~~lp~L~~L~l~~C~~L~~lP~~~~~~~L~~l~i~~~ 690 (731)
..+.....+++|++|++++|+ ++.+|....-.+|+.+++.+|
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC
T ss_pred cChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhh
Confidence 333345568999999999987 555554222223788777765
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=4.4e-24 Score=224.87 Aligned_cols=298 Identities=18% Similarity=0.230 Sum_probs=239.6
Q ss_pred eEEEEcCCccccCccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC
Q 038165 316 NFLVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS 395 (731)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 395 (731)
..+...+..+..++.+..+++++.+++.+|.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+.
T Consensus 47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~ 123 (347)
T 4fmz_A 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NIS 123 (347)
T ss_dssp SEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCC
T ss_pred cEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-ccc
Confidence 34555566667777788889999999999999999889999999999999999888753 889999999999999 888
Q ss_pred cccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhh
Q 038165 396 TLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEAN 475 (731)
Q Consensus 396 ~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 475 (731)
.+|. +..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++++|.+.+.
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~------- 192 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDI------- 192 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCC-------
T ss_pred Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccccc-------
Confidence 8886 89999999999999954444446999999999999999 6677776 88999999999999987632
Q ss_pred hhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCcc
Q 038165 476 VLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLE 555 (731)
Q Consensus 476 ~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 555 (731)
..+..++.|+.+.+..+....... ....++|+.|++++|......+ +..+++|++|++++|.+.
T Consensus 193 ----------~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 193 ----------SPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp ----------GGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ----------ccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 126677778777776554332222 2234589999999998555444 888999999999999887
Q ss_pred ceeecCccccccccccccCCccEEEEeccCCCCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCc
Q 038165 556 EMKIDCPEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQL 635 (731)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L 635 (731)
.++ .. ..+++|+.|++++|....++.+..+++|+.|++++|.- .... +..+..+++|
T Consensus 257 ~~~--~~--------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l-~~~~------------~~~l~~l~~L 313 (347)
T 4fmz_A 257 DIN--AV--------KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQL-GNED------------MEVIGGLTNL 313 (347)
T ss_dssp CCG--GG--------TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC-CGGG------------HHHHHTCTTC
T ss_pred CCh--hH--------hcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcC-CCcC------------hhHhhccccC
Confidence 742 11 34899999999999885567899999999999999853 3221 3457789999
Q ss_pred cEeeccccccccccCCCCcCCCCccEEeecccc
Q 038165 636 ESLSVWRGINLKSVYPNPLPFPKLKKIEVRECR 668 (731)
Q Consensus 636 ~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~ 668 (731)
++|++++|+ +..++. ...+++|++|++++|+
T Consensus 314 ~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 314 TTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred CEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 999999985 666654 6679999999999986
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=9.4e-24 Score=226.03 Aligned_cols=301 Identities=18% Similarity=0.162 Sum_probs=238.2
Q ss_pred ccccceEEEeecCCcccCCC--CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCE
Q 038165 333 EWEGAKRVSLMGNGIESLSE--IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHH 409 (731)
Q Consensus 333 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~ 409 (731)
...+++.+++.++.+..++. +..+++|++|++++|.+..+++..|..+++|++|++++| .+..+| ..++.+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 45799999999999999887 578999999999999999998877999999999999999 677664 55899999999
Q ss_pred EeccCCCCCCcchHH-hcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhh
Q 038165 410 LDLSSADITGLPQEL-KALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKEL 488 (731)
Q Consensus 410 L~L~~~~l~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l 488 (731)
|++++|.++.+|..+ .++++|++|++++| .+..+++..++++++|++|++++|.+... . +
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~---~ 182 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV---------------D---L 182 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC---------------C---G
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc---------------c---c
Confidence 999999999999875 89999999999999 66777766689999999999999987632 2 3
Q ss_pred ccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccc
Q 038165 489 LGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKL 568 (731)
Q Consensus 489 ~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 568 (731)
..++.|+.+++..+.... ......++.|++++|...... ....++|+.|++++|.+... .++
T Consensus 183 ~~l~~L~~L~l~~n~l~~-------~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l------ 244 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLST-------LAIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWL------ 244 (390)
T ss_dssp GGCTTCSEEECCSSCCSE-------EECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGG------
T ss_pred ccccccceeecccccccc-------cCCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHH------
Confidence 445556666555332211 122347899999988643332 23357899999999988764 122
Q ss_pred cccccCCccEEEEeccCC--CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccc
Q 038165 569 FRNGFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINL 646 (731)
Q Consensus 569 ~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L 646 (731)
..+++|+.|++++|.. ..+..+..+++|+.|+|++| .++.+ |.....+++|++|+++++ .+
T Consensus 245 --~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-------------~~~~~~l~~L~~L~L~~n-~l 307 (390)
T 3o6n_A 245 --LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL-------------NLYGQPIPTLKVLDLSHN-HL 307 (390)
T ss_dssp --GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEE-------------ECSSSCCTTCCEEECCSS-CC
T ss_pred --cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCccc-------------CcccCCCCCCCEEECCCC-cc
Confidence 3489999999999998 44677889999999999987 34444 445678999999999997 67
Q ss_pred cccCCCCcCCCCccEEeeccccCCCCCCCCCCCCCCcceEEecc
Q 038165 647 KSVYPNPLPFPKLKKIEVRECRQLKKLPLNSSSAKERRVVIEGS 690 (731)
Q Consensus 647 ~~l~~~~~~lp~L~~L~l~~C~~L~~lP~~~~~~~L~~l~i~~~ 690 (731)
..++.....+++|++|++++|+ ++.+|.... .+|+.+.+.++
T Consensus 308 ~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~-~~L~~L~l~~N 349 (390)
T 3o6n_A 308 LHVERNQPQFDRLENLYLDHNS-IVTLKLSTH-HTLKNLTLSHN 349 (390)
T ss_dssp CCCGGGHHHHTTCSEEECCSSC-CCCCCCCTT-CCCSEEECCSS
T ss_pred eecCccccccCcCCEEECCCCc-cceeCchhh-ccCCEEEcCCC
Confidence 7888777788999999999976 777774322 23899999865
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.4e-23 Score=238.66 Aligned_cols=149 Identities=22% Similarity=0.237 Sum_probs=122.3
Q ss_pred EEEcCCccccCccccccccceEEEeecCCcccCCC--CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC
Q 038165 318 LVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSE--IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS 395 (731)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 395 (731)
+...+..+..+|... .+.++.+++++|.+..++. +.++++|++|++++|.+..+++..|.++++|++|+|++| .+.
T Consensus 16 ~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~ 93 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQ 93 (606)
T ss_dssp EECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred eEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-ccc
Confidence 334445566666522 2689999999999988754 789999999999999999888877899999999999999 666
Q ss_pred cc-cccccCCcCCCEEeccCCCCCCcc-hHHhcCCcCcEeecccccccc--cccccccCCCCCCcEEEeeCcccCCCch
Q 038165 396 TL-PSGISSLVSLHHLDLSSADITGLP-QELKALEKLRYLNLEYAFNLS--IIPHQLISGFSNLEVLRLRGCGCCSVTE 470 (731)
Q Consensus 396 ~l-P~~i~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 470 (731)
.+ |..|+++++|++|++++|.+..+| ..++++++|++|++++| .+. .+|.. ++++++|++|++++|.+.+.++
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCEECT
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcceecCh
Confidence 66 888999999999999999998876 67899999999999999 444 46776 8899999999999998776543
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=5.1e-24 Score=246.25 Aligned_cols=323 Identities=11% Similarity=0.069 Sum_probs=228.2
Q ss_pred cccccccceEEEeecCCccc------------------CCCC-C--CCCCeeEEEcccCCccccChhhhcCCCCccEEEc
Q 038165 330 KIEEWEGAKRVSLMGNGIES------------------LSEI-P--TCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSL 388 (731)
Q Consensus 330 ~~~~~~~l~~l~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 388 (731)
.+..+++++.+++++|.+.. +|.. . ++++|++|++++|.+....+..+.++++|++|+|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 35677899999999999887 6553 4 7999999999999855443445889999999999
Q ss_pred CCCCCCC--cccccccCCc-------CCCEEeccCCCCCCcch--HHhcCCcCcEeecccccccccccccccCCCCCCcE
Q 038165 389 SENFHLS--TLPSGISSLV-------SLHHLDLSSADITGLPQ--ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEV 457 (731)
Q Consensus 389 ~~~~~~~--~lP~~i~~l~-------~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~ 457 (731)
++|..+. .+|..++.+. +|++|++++|.++.+|. .++++++|++|++++| .++.+| . ++.+++|++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceE
Confidence 9994255 4888777665 99999999999999998 8999999999999998 566888 3 889999999
Q ss_pred EEeeCcccCCCchhhhhhhhcCCcccchhhhccCCC-CcEEEEEeechhHHHhhhCCchh--------------------
Q 038165 458 LRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKR-LNVLSWTFRSSLAVQKFLKYPKL-------------------- 516 (731)
Q Consensus 458 L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~-L~~l~~~~~~~~~~~~l~~~~~~-------------------- 516 (731)
|++++|.+..++ .. +..+.. |+.+++..+.... ++.....
T Consensus 600 L~Ls~N~l~~lp-------------~~---l~~l~~~L~~L~Ls~N~L~~---lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 600 LKLDYNQIEEIP-------------ED---FCAFTDQVEGLGFSHNKLKY---IPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp EECCSSCCSCCC-------------TT---SCEECTTCCEEECCSSCCCS---CCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred EECcCCccccch-------------HH---HhhccccCCEEECcCCCCCc---CchhhhccccCCCCEEECcCCcCCCcc
Confidence 999998876432 22 223333 3333333222111 1111000
Q ss_pred -----------hccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccC
Q 038165 517 -----------VSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCR 585 (731)
Q Consensus 517 -----------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 585 (731)
..+|+.|++++|.........+..+++|+.|++++|.+..+|...+.... ....++++|+.|+|++|.
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~-~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD-GNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT-SCCTTGGGCCEEECCSSC
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc-ccccccCCccEEECCCCC
Confidence 12566666666654433222244667788888887777665544432100 001234589999999998
Q ss_pred C-CCCchhh--ccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccc------cccccccCCCCcCC
Q 038165 586 G-KDLTWLV--FVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWR------GINLKSVYPNPLPF 656 (731)
Q Consensus 586 ~-~~~~~l~--~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~L~~l~~~~~~l 656 (731)
. ..+..+. .+++|+.|+|++|. +..+ |..+..+++|+.|+|++ +.-...+|.....+
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~l-------------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNC-FSSF-------------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSC-CSSC-------------CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CccchHHhhhccCCCcCEEEeCCCC-CCcc-------------chhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 8 6677776 89999999998873 3333 66788999999999977 33355677777889
Q ss_pred CCccEEeeccccCCCCCCCCCCCCCCcceEEecch
Q 038165 657 PKLKKIEVRECRQLKKLPLNSSSAKERRVVIEGSK 691 (731)
Q Consensus 657 p~L~~L~l~~C~~L~~lP~~~~~~~L~~l~i~~~~ 691 (731)
++|++|++++|.- ..+|.... .+|+.+++.+|+
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC-SSSCEEECCSCT
T ss_pred CCCCEEECCCCCC-CccCHhhc-CCCCEEECCCCC
Confidence 9999999999865 99998755 359999999874
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.4e-23 Score=228.24 Aligned_cols=312 Identities=16% Similarity=0.267 Sum_probs=187.5
Q ss_pred EEEcCCccccCccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc
Q 038165 318 LVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL 397 (731)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l 397 (731)
+...+..+..++.....++++.+++++|.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+
T Consensus 51 L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~ 127 (466)
T 1o6v_A 51 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDI 127 (466)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCC
T ss_pred EecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCC
Confidence 334444556666677778888888888888888778888888888888888877776 778888888888888 77777
Q ss_pred cccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhh
Q 038165 398 PSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVL 477 (731)
Q Consensus 398 P~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 477 (731)
|. ++.+++|++|++++|.+..+| .+..+++|++|++++ .+..++. ++++++|++|++++|.+...
T Consensus 128 ~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~~--------- 192 (466)
T 1o6v_A 128 DP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSDI--------- 192 (466)
T ss_dssp GG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCCC---------
T ss_pred hH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCCC---------
Confidence 75 888888888888888888776 366777777777653 2344444 66777777777777765532
Q ss_pred cCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeec----------------------CCCCccc
Q 038165 478 CADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQC----------------------ESAPFNV 535 (731)
Q Consensus 478 ~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~----------------------~~~~~~~ 535 (731)
..+..+++|+.+.+..+....... ....++|+.|++++| ......+
T Consensus 193 --------~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 193 --------SVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp --------GGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred --------hhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh
Confidence 123334444444443222111111 111234444444444 3222221
Q ss_pred ccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCCCCCchhhccCCccEEeeeccccccccccc
Q 038165 536 LHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKVLYIGFCGDMEEIVSV 615 (731)
Q Consensus 536 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~ 615 (731)
+..+++|++|++++|.+..++. ...+++|+.|++++|.....+.+..+++|+.|++++|. +..+
T Consensus 261 --~~~l~~L~~L~l~~n~l~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~--- 324 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISNISP----------LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDI--- 324 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCCCGG----------GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCC---
T ss_pred --hhcCCCCCEEECCCCccCcccc----------ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCc---
Confidence 4444444455554444433221 12356666666666665333345666666666666652 2222
Q ss_pred ccccccccccCCCCccCcCccEeeccccccccccCCCCcCCCCccEEeeccccCCCCCCCCCCCCC-CcceEEecc
Q 038165 616 DKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECRQLKKLPLNSSSAK-ERRVVIEGS 690 (731)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~L~~lP~~~~~~~-L~~l~i~~~ 690 (731)
+ .+..+++|++|++++| .+..++ ....+++|+.|++++|+--...| ....+ |+.+.+.+|
T Consensus 325 ----------~-~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 325 ----------S-PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp ----------G-GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred ----------h-hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 1 1456777777777775 455543 34567777777777775433333 22223 677776665
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=8.7e-24 Score=231.42 Aligned_cols=345 Identities=19% Similarity=0.190 Sum_probs=236.5
Q ss_pred EEEcCCccccCccccccccceEEEeecCCcccC--CCCCCCCCeeEEEcccCCcc-ccChhhhcCCCCccEEEcCCCCCC
Q 038165 318 LVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESL--SEIPTCPRLVTLLVDENPIV-EITDGFFQSMSSLRVLSLSENFHL 394 (731)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l--~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~~~~~ 394 (731)
+...+..+..+|.. .++++++++++|.+..+ ..+..+++|++|++++|.+. .+++..|..+++|++|+|++| .+
T Consensus 15 ~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l 91 (455)
T 3v47_A 15 AICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QF 91 (455)
T ss_dssp EECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TT
T ss_pred cCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-cc
Confidence 44445566667662 36899999999999886 35799999999999999875 677777999999999999999 66
Q ss_pred Ccc-cccccCCcCCCEEeccCCCCCC-cchH--HhcCCcCcEeecccccccccc-cccccCCCCCCcEEEeeCcccCCCc
Q 038165 395 STL-PSGISSLVSLHHLDLSSADITG-LPQE--LKALEKLRYLNLEYAFNLSII-PHQLISGFSNLEVLRLRGCGCCSVT 469 (731)
Q Consensus 395 ~~l-P~~i~~l~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~~~~~ 469 (731)
..+ |..|+.+++|++|++++|.++. +|.. +.++++|++|++++| .+..+ |...++++++|++|++++|.+.+..
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 654 8889999999999999999987 4554 889999999999999 45555 5555789999999999999887553
Q ss_pred hhhhhhhhcC-------------Ccc---cc---hhhhccCCCCcEEEEEeechhH--HHhhhCCchhhccceEEEEeec
Q 038165 470 EEEEANVLCA-------------DAE---PL---MKELLGLKRLNVLSWTFRSSLA--VQKFLKYPKLVSITQSVWVYQC 528 (731)
Q Consensus 470 ~~~~~~~~~~-------------~~~---~~---i~~l~~L~~L~~l~~~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~ 528 (731)
+......... ..+ .. ...+..+..|+.+++..+.... ...+... .....++.|.++++
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA-IAGTKIQSLILSNS 249 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH-TTTCCEEEEECTTC
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc-ccccceeeEeeccc
Confidence 2211110000 000 00 0001122334444443322111 1111100 00135666666655
Q ss_pred CCCCc----------cccccc--ccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC--CCCchhhc
Q 038165 529 ESAPF----------NVLHLA--YMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWLVF 594 (731)
Q Consensus 529 ~~~~~----------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~ 594 (731)
..... ....+. ..++|+.|++++|.+...++..+. .+++|+.|++++|.. ..+..+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~Ls~n~l~~~~~~~~~~ 321 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS--------HFTDLEQLTLAQNEINKIDDNAFWG 321 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT--------TCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc--------cCCCCCEEECCCCcccccChhHhcC
Confidence 31111 011112 236889999999988876555443 378999999999988 44567889
Q ss_pred cCCccEEeeecccccccccccccccccccccCCCCccCcCccEeecccccccccc-CCCCcCCCCccEEeeccccCCCCC
Q 038165 595 VQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSV-YPNPLPFPKLKKIEVRECRQLKKL 673 (731)
Q Consensus 595 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l-~~~~~~lp~L~~L~l~~C~~L~~l 673 (731)
+++|++|+|++|. +..+. |..+..+++|++|+|+++ .+..+ +.....+++|++|++++| +++.+
T Consensus 322 l~~L~~L~Ls~N~-l~~~~------------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 386 (455)
T 3v47_A 322 LTHLLKLNLSQNF-LGSID------------SRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSV 386 (455)
T ss_dssp CTTCCEEECCSSC-CCEEC------------GGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred cccCCEEECCCCc-cCCcC------------hhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccC
Confidence 9999999999884 33332 346788999999999987 45555 556778999999999985 67788
Q ss_pred CCCC-CCCC-CcceEEecc
Q 038165 674 PLNS-SSAK-ERRVVIEGS 690 (731)
Q Consensus 674 P~~~-~~~~-L~~l~i~~~ 690 (731)
|... ...+ |+.+++.++
T Consensus 387 ~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred CHhHhccCCcccEEEccCC
Confidence 8643 4444 889988754
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=2.1e-23 Score=235.44 Aligned_cols=144 Identities=26% Similarity=0.333 Sum_probs=102.5
Q ss_pred cCCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc
Q 038165 321 AGVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP 398 (731)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP 398 (731)
.+.....+|.. -.+.++.+++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++| .+..+|
T Consensus 15 ~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 92 (570)
T 2z63_A 15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLA 92 (570)
T ss_dssp CSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEEC
T ss_pred CCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccC
Confidence 34445555541 2246788888888877764 4677888888888888877777777777888888888888 566554
Q ss_pred -ccccCCcCCCEEeccCCCCCCcch-HHhcCCcCcEeeccccccccc--ccccccCCCCCCcEEEeeCcccCCC
Q 038165 399 -SGISSLVSLHHLDLSSADITGLPQ-ELKALEKLRYLNLEYAFNLSI--IPHQLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 399 -~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
..|+.+++|++|++++|+++.+|. .++++++|++|++++| .+.. +|.. ++++++|++|++++|.+.+.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCcccee
Confidence 567778888888888887777765 4777788888888877 4443 5655 77778888888877766544
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=2.7e-23 Score=233.28 Aligned_cols=146 Identities=25% Similarity=0.325 Sum_probs=122.8
Q ss_pred cCCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc
Q 038165 321 AGVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP 398 (731)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP 398 (731)
.+..+..+|..- .+.++.+++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++| .+..+|
T Consensus 13 ~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 90 (549)
T 2z81_A 13 RSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLS 90 (549)
T ss_dssp TTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCC
T ss_pred CCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccC
Confidence 344555666532 368999999999998763 5789999999999999999998877999999999999999 777776
Q ss_pred cc-ccCCcCCCEEeccCCCCCC--cchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCC
Q 038165 399 SG-ISSLVSLHHLDLSSADITG--LPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 399 ~~-i~~l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
.. |+.+++|++|++++|.++. .|..++++++|++|++++|..++.+|...++++++|++|++++|.+.+.
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 55 9999999999999999985 4678899999999999999768888865589999999999999987753
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=3e-23 Score=227.47 Aligned_cols=311 Identities=18% Similarity=0.257 Sum_probs=219.6
Q ss_pred cccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEe
Q 038165 332 EEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLD 411 (731)
Q Consensus 332 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~ 411 (731)
..+++++.+++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+|. ++.+++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEEE
Confidence 3457899999999999999999999999999999999988887 889999999999999 8888886 99999999999
Q ss_pred ccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccC
Q 038165 412 LSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGL 491 (731)
Q Consensus 412 L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L 491 (731)
+++|.++.+|. +.++++|++|++++| .+..+|. ++++++|++|++.++ .. .+..+..+
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~-~~-----------------~~~~~~~l 176 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQ-VT-----------------DLKPLANL 176 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEES-CC-----------------CCGGGTTC
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCc-cc-----------------CchhhccC
Confidence 99999999986 999999999999999 6777876 899999999999743 22 12236677
Q ss_pred CCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCcccccccccc
Q 038165 492 KRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRN 571 (731)
Q Consensus 492 ~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 571 (731)
++|+.+++..+.......+ ...++|+.|++++|......+ +..+++|+.|++++|.+..++ .+ .
T Consensus 177 ~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l--------~ 240 (466)
T 1o6v_A 177 TTLERLDISSNKVSDISVL----AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TL--------A 240 (466)
T ss_dssp TTCCEEECCSSCCCCCGGG----GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GG--------G
T ss_pred CCCCEEECcCCcCCCChhh----ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hh--------h
Confidence 7888888775543332222 234589999999997554433 677888888888888776531 11 2
Q ss_pred ccCCccEEEEeccCCCCCchhhccCCccEEeeeccccccccccccccc----------ccccccCCCCccCcCccEeecc
Q 038165 572 GFRSLNTVVLRSCRGKDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLR----------DISGIIGSERNFFAQLESLSVW 641 (731)
Q Consensus 572 ~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~----------~~~~~~~~~~~~~~~L~~L~L~ 641 (731)
.+++|+.|++++|.....+.+..+++|+.|++++|. +..+....... .+.+. + .+..+++|+.|+++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLEDI-S-PISNLKNLTYLTLY 317 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCC-G-GGGGCTTCSEEECC
T ss_pred cCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCcccCc-h-hhcCCCCCCEEECc
Confidence 245555555555555222335555555555555442 11111100000 01111 1 25677888888887
Q ss_pred ccccccccCCCCcCCCCccEEeeccccCCCCCCCCCCCCCCcceEEecc
Q 038165 642 RGINLKSVYPNPLPFPKLKKIEVRECRQLKKLPLNSSSAKERRVVIEGS 690 (731)
Q Consensus 642 ~~~~L~~l~~~~~~lp~L~~L~l~~C~~L~~lP~~~~~~~L~~l~i~~~ 690 (731)
+| .+..++. ...+++|++|++++| +++.+|....-.+|+.+++.+|
T Consensus 318 ~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 318 FN-NISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHN 363 (466)
T ss_dssp SS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred CC-cCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCC
Confidence 76 4544443 456788888888887 5666654333333888888766
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=6.7e-24 Score=246.93 Aligned_cols=323 Identities=15% Similarity=0.121 Sum_probs=179.0
Q ss_pred ccccccceEEEeecCCccc-CCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC--------------
Q 038165 331 IEEWEGAKRVSLMGNGIES-LSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS-------------- 395 (731)
Q Consensus 331 ~~~~~~l~~l~l~~~~~~~-l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~-------------- 395 (731)
....++++.+++.+|.+.. ++.+..+++|++|++++|.+....+..+..+++|++|++++|....
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 3555677777777777655 4456777777777777777665545556677777777777762222
Q ss_pred --------cccccccCC-cCCCEEeccCCCCC-CcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCccc
Q 038165 396 --------TLPSGISSL-VSLHHLDLSSADIT-GLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGC 465 (731)
Q Consensus 396 --------~lP~~i~~l-~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 465 (731)
.+|..+..+ ++|++|++++|.++ .+|..++++++|++|++++|.....+|...++++++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 333333332 44445555444444 24444555555555555555322244443344555555555555544
Q ss_pred CCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCc--hhhccceEEEEeecCCCCcccccccccCC
Q 038165 466 CSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYP--KLVSITQSVWVYQCESAPFNVLHLAYMEN 543 (731)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 543 (731)
. +..+..+..+. ..|+.+++..+.... ..+... ...+.|+.|++++|...+..+..+..+++
T Consensus 356 ~------------~~~p~~l~~l~--~~L~~L~Ls~N~l~~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 419 (768)
T 3rgz_A 356 S------------GELPESLTNLS--ASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419 (768)
T ss_dssp E------------ECCCTTHHHHT--TTCSEEECCSSEEEE--ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT
T ss_pred C------------ccccHHHHhhh--cCCcEEEccCCCcCC--CcChhhhhcccCCccEEECCCCccccccCHHHhcCCC
Confidence 3 12233333332 022222222111000 000000 01245677777766544445555777777
Q ss_pred ccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC--CCCchhhccCCccEEeeeccccccccccccccccc
Q 038165 544 LQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDI 621 (731)
Q Consensus 544 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~ 621 (731)
|+.|++++|.+....+..+ ..+++|+.|++++|.. ..+..+..+++|+.|+|++|.....+
T Consensus 420 L~~L~Ls~N~l~~~~p~~l--------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--------- 482 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSL--------GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI--------- 482 (768)
T ss_dssp CCEEECCSSEEESCCCGGG--------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC---------
T ss_pred CCEEECcCCcccCcccHHH--------hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC---------
Confidence 7777777776654322222 2266777777777776 45556667777777777776432222
Q ss_pred ccccCCCCccCcCccEeeccccccccccCCCCcCCCCccEEeeccccCCCCCCCCCCCCC-CcceEEecc
Q 038165 622 SGIIGSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECRQLKKLPLNSSSAK-ERRVVIEGS 690 (731)
Q Consensus 622 ~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~L~~lP~~~~~~~-L~~l~i~~~ 690 (731)
|..+..+++|++|++++|.-...+|.....+++|++|++++|.-...+|......+ |+.+++.+|
T Consensus 483 ----p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 483 ----PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp ----CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred ----CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 45666777777777777654446666666677777777777766556666555544 666666644
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=5.7e-23 Score=226.25 Aligned_cols=286 Identities=23% Similarity=0.308 Sum_probs=158.7
Q ss_pred CCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc
Q 038165 322 GVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS 399 (731)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~ 399 (731)
+..+..+|.. -...++.+++.+|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.
T Consensus 20 ~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 97 (477)
T 2id5_A 20 RKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPL 97 (477)
T ss_dssp SCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCT
T ss_pred CCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCc
Confidence 3344444432 1246777777777777663 4677777777777777777776666777777777777777 6666665
Q ss_pred c-ccCCcCCCEEeccCCCCCCc-chHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhh
Q 038165 400 G-ISSLVSLHHLDLSSADITGL-PQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVL 477 (731)
Q Consensus 400 ~-i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 477 (731)
. |+.+++|++|+|++|.+..+ |..+.++++|++|++++| .+..++...+.++++|++|++++|.+.+.
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------- 167 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSI--------- 167 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSC---------
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCccc---------
Confidence 3 56777777777777777664 445677777777777777 45555544477777777777777766532
Q ss_pred cCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccc-
Q 038165 478 CADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEE- 556 (731)
Q Consensus 478 ~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~- 556 (731)
....+..+++|+.+++. ++.........+..+++|++|++++|....
T Consensus 168 ------~~~~l~~l~~L~~L~l~--------------------------~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 168 ------PTEALSHLHGLIVLRLR--------------------------HLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp ------CHHHHTTCTTCCEEEEE--------------------------SCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred ------ChhHhcccCCCcEEeCC--------------------------CCcCcEeChhhcccCcccceeeCCCCccccc
Confidence 12223444444444444 333323333334555555555555554433
Q ss_pred eeecCccccccccccccCCccEEEEeccCC-CCC-chhhccCCccEEeeecccccccccccccccccccccCCCCccCcC
Q 038165 557 MKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDL-TWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQ 634 (731)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~-~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 634 (731)
++..... ..+|+.|++++|.. ..+ ..+..+++|+.|+|++|. +..+. +..+..+++
T Consensus 216 ~~~~~~~---------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~------------~~~~~~l~~ 273 (477)
T 2id5_A 216 MTPNCLY---------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIE------------GSMLHELLR 273 (477)
T ss_dssp ECTTTTT---------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEEC------------TTSCTTCTT
T ss_pred cCccccc---------CccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccC------------hhhcccccc
Confidence 2222211 23555555555555 222 234455555555555542 22221 223445555
Q ss_pred ccEeecccccccccc-CCCCcCCCCccEEeeccccCCCCCCC
Q 038165 635 LESLSVWRGINLKSV-YPNPLPFPKLKKIEVRECRQLKKLPL 675 (731)
Q Consensus 635 L~~L~L~~~~~L~~l-~~~~~~lp~L~~L~l~~C~~L~~lP~ 675 (731)
|++|.|.++ .+..+ +.....+++|++|++++| +++.+|.
T Consensus 274 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 274 LQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp CCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred CCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCH
Confidence 555555553 23333 223334555555555554 3444443
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=6.9e-24 Score=241.14 Aligned_cols=338 Identities=12% Similarity=0.093 Sum_probs=195.1
Q ss_pred ccccccceEEEeecCCccc------------------CCC-CC--CCCCeeEEEcccCCccccChhhhcCCCCccEEEcC
Q 038165 331 IEEWEGAKRVSLMGNGIES------------------LSE-IP--TCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLS 389 (731)
Q Consensus 331 ~~~~~~l~~l~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~ 389 (731)
+..+++++.+++++|.+.. +|. +. ++++|++|++++|.+....+..+.++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 3445566666666666655 443 24 56666666666666443322335666666666666
Q ss_pred CCCCCC--cccccccCC------cCCCEEeccCCCCCCcch--HHhcCCcCcEeecccccccccccccccCCCCCCcEEE
Q 038165 390 ENFHLS--TLPSGISSL------VSLHHLDLSSADITGLPQ--ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLR 459 (731)
Q Consensus 390 ~~~~~~--~lP~~i~~l------~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~ 459 (731)
+|..+. .+|..++.+ ++|++|++++|+++.+|. .++++++|++|++++|.....+| . ++.+++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEE
Confidence 662143 366655554 666666666666666666 56666666666666663222555 2 55566666666
Q ss_pred eeCcccCCCchhhhhh------------hhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCch-------hhccc
Q 038165 460 LRGCGCCSVTEEEEAN------------VLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPK-------LVSIT 520 (731)
Q Consensus 460 l~~~~~~~~~~~~~~~------------~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~-------~~~~L 520 (731)
+++|.+..++.....- .. ..++..+.. ..+.+|+.+++..+..... .+.... ...+|
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l-~~lp~~~~~-~~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDA-KSVSVMSAIDFSYNEIGSV--DGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCC-SSCCSCCCT-TCSSCEEEEECCSSCTTTT--TTCSSCTTCSSCCCCCCE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcC-cccchhhhh-cccCccCEEECcCCcCCCc--chhhhcccccccccCCCC
Confidence 6655544221000000 00 000111110 1122344444433222110 000000 12366
Q ss_pred eEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-CCCchhh--ccCC
Q 038165 521 QSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLV--FVQN 597 (731)
Q Consensus 521 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~--~l~~ 597 (731)
+.|++++|.........+..+++|++|++++|.+..++...+.... .....+++|+.|+|++|.. ..+..+. .+++
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 514 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-EECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc-ccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence 7777777664433333355577777788877777765554433100 0011234899999999988 6666776 8999
Q ss_pred ccEEeeecccccccccccccccccccccCCCCccCcCccEeeccc------cccccccCCCCcCCCCccEEeeccccCCC
Q 038165 598 LKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWR------GINLKSVYPNPLPFPKLKKIEVRECRQLK 671 (731)
Q Consensus 598 L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~L~~l~~~~~~lp~L~~L~l~~C~~L~ 671 (731)
|+.|+|++|. +..+ |..+..+++|++|+|++ +.-...+|.....+++|++|++++|.- +
T Consensus 515 L~~L~Ls~N~-l~~i-------------p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~ 579 (636)
T 4eco_A 515 LVGIDLSYNS-FSKF-------------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-R 579 (636)
T ss_dssp CCEEECCSSC-CSSC-------------CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred cCEEECCCCC-CCCc-------------ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-C
Confidence 9999998874 3333 66788899999999954 334566777778899999999999865 8
Q ss_pred CCCCCCCCCCCcceEEecch
Q 038165 672 KLPLNSSSAKERRVVIEGSK 691 (731)
Q Consensus 672 ~lP~~~~~~~L~~l~i~~~~ 691 (731)
.+|.... .+|+.+++.+++
T Consensus 580 ~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 580 KVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp BCCSCCC-TTCCEEECCSCT
T ss_pred ccCHhHh-CcCCEEECcCCC
Confidence 9998655 349999998773
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=7.4e-23 Score=232.60 Aligned_cols=344 Identities=18% Similarity=0.113 Sum_probs=217.1
Q ss_pred EcCCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCc-
Q 038165 320 RAGVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLST- 396 (731)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~- 396 (731)
..+.....+|..- ...++.+++++|.+..++ .+..+++|++|++++|.+..+.+..|.++++|++|++++| .+..
T Consensus 19 c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 96 (606)
T 3t6q_A 19 CENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFM 96 (606)
T ss_dssp CTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEE
T ss_pred CCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-ccccc
Confidence 3444555555422 247999999999998874 5789999999999999998888777999999999999999 5655
Q ss_pred ccccccCCcCCCEEeccCCCCCCc-chHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhh
Q 038165 397 LPSGISSLVSLHHLDLSSADITGL-PQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEAN 475 (731)
Q Consensus 397 lP~~i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 475 (731)
.|..|+.+++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+.+..+
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----- 170 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSK----- 170 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECH-----
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccCh-----
Confidence 477899999999999999999997 567899999999999999 5666532225569999999999998774422
Q ss_pred hhcCCcccchhhhccCCCCc--EEEEEeechhH-------------------------HHhhhCC---------------
Q 038165 476 VLCADAEPLMKELLGLKRLN--VLSWTFRSSLA-------------------------VQKFLKY--------------- 513 (731)
Q Consensus 476 ~~~~~~~~~i~~l~~L~~L~--~l~~~~~~~~~-------------------------~~~l~~~--------------- 513 (731)
..+..+..|+ .+++..+.... ...+...
T Consensus 171 ----------~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 240 (606)
T 3t6q_A 171 ----------EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240 (606)
T ss_dssp ----------HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC
T ss_pred ----------hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccc
Confidence 2222233333 11111100000 0000000
Q ss_pred --------chh-hccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEecc
Q 038165 514 --------PKL-VSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSC 584 (731)
Q Consensus 514 --------~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c 584 (731)
..+ ...++.|+++++......+..+..+++|++|++++|.+..+|.... .+++|++|++++|
T Consensus 241 ~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~---------~l~~L~~L~l~~n 311 (606)
T 3t6q_A 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV---------GLSTLKKLVLSAN 311 (606)
T ss_dssp CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCC---------SCTTCCEEECTTC
T ss_pred cccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhc---------ccccCCEEECccC
Confidence 000 0156777777776555555557778888888888887776654332 2566677777666
Q ss_pred CC-C-CCchhhccCCccEEeeecccccccccccc--cc----------ccccccc--CCCCccCcCccEeeccccccccc
Q 038165 585 RG-K-DLTWLVFVQNLKVLYIGFCGDMEEIVSVD--KL----------RDISGII--GSERNFFAQLESLSVWRGINLKS 648 (731)
Q Consensus 585 ~~-~-~~~~l~~l~~L~~L~L~~~~~l~~l~~~~--~~----------~~~~~~~--~~~~~~~~~L~~L~L~~~~~L~~ 648 (731)
.. . .+..+..+++|++|++++|.....++... .. ..+.... +..+..+++|++|+++++.-...
T Consensus 312 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 66 2 23455666666666666654322221100 00 0011110 33566677777777776532222
Q ss_pred cCCCCcCCCCccEEeeccccCCCCCCCC-CCCCC-CcceEEecc
Q 038165 649 VYPNPLPFPKLKKIEVRECRQLKKLPLN-SSSAK-ERRVVIEGS 690 (731)
Q Consensus 649 l~~~~~~lp~L~~L~l~~C~~L~~lP~~-~~~~~-L~~l~i~~~ 690 (731)
.+.....+++|++|++++|.--...|.. ....+ |+.+++.+|
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 3444556777888888776544444432 33334 777777765
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=8.6e-23 Score=224.82 Aligned_cols=289 Identities=20% Similarity=0.213 Sum_probs=219.8
Q ss_pred eEEEEcCCccccCc--cccccccceEEEeecCCcccC--CCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCC
Q 038165 316 NFLVRAGVKLTEAP--KIEEWEGAKRVSLMGNGIESL--SEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSEN 391 (731)
Q Consensus 316 ~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 391 (731)
..+...+..+..++ .+..+++++.+++.+|.+..+ ..+.++++|++|++++|.+..++...|..+++|++|+|++|
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence 34444444454442 466788999999999999886 35789999999999999999999988999999999999999
Q ss_pred CCCCc-ccccccCCcCCCEEeccCCCCCCc-chHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCc
Q 038165 392 FHLST-LPSGISSLVSLHHLDLSSADITGL-PQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVT 469 (731)
Q Consensus 392 ~~~~~-lP~~i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 469 (731)
.+.. .|..|..+++|++|++++|.+..+ |..+..+++|+.|++++| .++.+|...+..+++|+.|++.+|.+...
T Consensus 115 -~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~- 191 (477)
T 2id5_A 115 -KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAI- 191 (477)
T ss_dssp -CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEE-
T ss_pred -ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEe-
Confidence 5555 467899999999999999999886 457899999999999999 77888887799999999999999987733
Q ss_pred hhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEec
Q 038165 470 EEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDL 549 (731)
Q Consensus 470 ~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 549 (731)
....+..+.+|+.+++..+... ..+........+|+.|++++|.........+..+++|+.|++
T Consensus 192 --------------~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 192 --------------RDYSFKRLYRLKVLEISHWPYL--DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp --------------CTTCSCSCTTCCEEEEECCTTC--CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred --------------ChhhcccCcccceeeCCCCccc--cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence 2223456677777777643211 111111111237888999888766555556788888999999
Q ss_pred cCCCccceeecCccccccccccccCCccEEEEeccCC--CCCchhhccCCccEEeeecccccccccccccccccccccCC
Q 038165 550 EYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGS 627 (731)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 627 (731)
++|.+..++...+. .+++|+.|+|++|.. ..+..+..+++|+.|+|++| .++.+. +.
T Consensus 256 s~n~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~------------~~ 314 (477)
T 2id5_A 256 SYNPISTIEGSMLH--------ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLE------------ES 314 (477)
T ss_dssp CSSCCCEECTTSCT--------TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCC------------GG
T ss_pred CCCcCCccChhhcc--------ccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeC------------Hh
Confidence 98888776555443 378889999988888 44567788889999999887 344432 23
Q ss_pred CCccCcCccEeeccccc
Q 038165 628 ERNFFAQLESLSVWRGI 644 (731)
Q Consensus 628 ~~~~~~~L~~L~L~~~~ 644 (731)
.+..+++|++|+|.+++
T Consensus 315 ~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 315 VFHSVGNLETLILDSNP 331 (477)
T ss_dssp GBSCGGGCCEEECCSSC
T ss_pred HcCCCcccCEEEccCCC
Confidence 56778888898888754
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.3e-23 Score=235.11 Aligned_cols=353 Identities=16% Similarity=0.108 Sum_probs=230.8
Q ss_pred EEEcCCccccCc--cccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCC
Q 038165 318 LVRAGVKLTEAP--KIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFH 393 (731)
Q Consensus 318 ~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 393 (731)
+...+..+..++ .+.+.++++.+++.+|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++| .
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 111 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-N 111 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-c
Confidence 333444444443 4567789999999999998875 3789999999999999999998888999999999999999 7
Q ss_pred CCcccc-cccCCcCCCEEeccCCCCCC--cchHHhcCCcCcEeecccccccccccccccCCCCCC----cEEEeeCcccC
Q 038165 394 LSTLPS-GISSLVSLHHLDLSSADITG--LPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNL----EVLRLRGCGCC 466 (731)
Q Consensus 394 ~~~lP~-~i~~l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L----~~L~l~~~~~~ 466 (731)
+..+|. .++.+++|++|++++|.++. +|..++++++|++|++++| .++.++...++.+++| ++|++++|.+.
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCce
Confidence 888775 68999999999999999886 7899999999999999999 5666655446666666 67777776655
Q ss_pred CCchhhhhh---------------------------------------------------------------------hh
Q 038165 467 SVTEEEEAN---------------------------------------------------------------------VL 477 (731)
Q Consensus 467 ~~~~~~~~~---------------------------------------------------------------------~~ 477 (731)
..++..... ..
T Consensus 191 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 270 (570)
T 2z63_A 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270 (570)
T ss_dssp EECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEE
T ss_pred ecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhh
Confidence 433211110 00
Q ss_pred cCCcccchhhhccCCCCcEEEEEeechhHHHh-------------------hhC--C------------------chhhc
Q 038165 478 CADAEPLMKELLGLKRLNVLSWTFRSSLAVQK-------------------FLK--Y------------------PKLVS 518 (731)
Q Consensus 478 ~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~-------------------l~~--~------------------~~~~~ 518 (731)
....+ ..+..+++|+.+++..+....+.. ++. . ....+
T Consensus 271 ~~~~~---~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 271 LDDII---DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp ESCST---TTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhch---hhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 00001 112223334443333211110000 000 0 02235
Q ss_pred cceEEEEeecCCCCcc--cccccccCCccEEeccCCCccceeecCccc---c----------cc----ccccccCCccEE
Q 038165 519 ITQSVWVYQCESAPFN--VLHLAYMENLQELDLEYCNLEEMKIDCPEE---V----------KK----LFRNGFRSLNTV 579 (731)
Q Consensus 519 ~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---~----------~~----~~~~~l~~L~~L 579 (731)
+|+.|++++|...... +..+..+++|++|++++|.+..++.. +.. + .. .....+++|+.|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 6777887777533332 33466778888888888877665443 111 0 00 011345666677
Q ss_pred EEeccCC--CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeecccccccccc-CCCCcCC
Q 038165 580 VLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSV-YPNPLPF 656 (731)
Q Consensus 580 ~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l-~~~~~~l 656 (731)
++++|.. ..+..+..+++|+.|+|++|..... .+|..+..+++|++|++++|. +..+ +.....+
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 493 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN------------FLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSL 493 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG------------EECSCCTTCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccc------------cchhhhhcccCCCEEECCCCc-cccCChhhhhcc
Confidence 7766666 3445566667777777766642211 116678899999999999874 5555 5567788
Q ss_pred CCccEEeeccccCCCCCCC-CCCCCC-CcceEEecc
Q 038165 657 PKLKKIEVRECRQLKKLPL-NSSSAK-ERRVVIEGS 690 (731)
Q Consensus 657 p~L~~L~l~~C~~L~~lP~-~~~~~~-L~~l~i~~~ 690 (731)
++|++|++++| +++.+|. .....+ |+.+++.++
T Consensus 494 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 494 SSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 99999999998 5777765 344444 888888864
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=6.4e-23 Score=228.52 Aligned_cols=351 Identities=17% Similarity=0.161 Sum_probs=218.4
Q ss_pred EEEcCCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC
Q 038165 318 LVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS 395 (731)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 395 (731)
+...+..+..+|..-. ++++.+++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|+|++| .+.
T Consensus 5 l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 82 (520)
T 2z7x_B 5 VDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLV 82 (520)
T ss_dssp EECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCC
T ss_pred EecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-cee
Confidence 3344455566664333 79999999999998875 4789999999999999999987777999999999999999 888
Q ss_pred cccccccCCcCCCEEeccCCCCCC--cchHHhcCCcCcEeecccccccccccccccCCCCCC--cEEEeeCccc--CCCc
Q 038165 396 TLPSGISSLVSLHHLDLSSADITG--LPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNL--EVLRLRGCGC--CSVT 469 (731)
Q Consensus 396 ~lP~~i~~l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~--~~~~ 469 (731)
.+|.. .+++|++|++++|.++. +|..++++++|++|++++| .+... .+..+++| ++|++++|.+ .+..
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKS---SVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCGG---GGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccchh---hccccccceeeEEEeecccccccccc
Confidence 99977 89999999999999987 5789999999999999998 44442 26778888 9999999887 3322
Q ss_pred hhhhhhhh-------------cCC----------------------------cccchhhhccCCCCcEEEEEeechhH--
Q 038165 470 EEEEANVL-------------CAD----------------------------AEPLMKELLGLKRLNVLSWTFRSSLA-- 506 (731)
Q Consensus 470 ~~~~~~~~-------------~~~----------------------------~~~~i~~l~~L~~L~~l~~~~~~~~~-- 506 (731)
+....... .+. ....+..+..+..|+.+.+.......
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence 21111100 000 01111223334444444333221110
Q ss_pred HHhhh-----------------------CCc-----hhhcc--------------------------ceEEEEeecCCCC
Q 038165 507 VQKFL-----------------------KYP-----KLVSI--------------------------TQSVWVYQCESAP 532 (731)
Q Consensus 507 ~~~l~-----------------------~~~-----~~~~~--------------------------L~~L~l~~~~~~~ 532 (731)
...+. ... ...+. ++.|++++|....
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc
Confidence 00000 000 00111 2222222222110
Q ss_pred cccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCCCC----CchhhccCCccEEeeecccc
Q 038165 533 FNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRGKD----LTWLVFVQNLKVLYIGFCGD 608 (731)
Q Consensus 533 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~----~~~l~~l~~L~~L~L~~~~~ 608 (731)
.. ....+++|++|++++|.+....+..+ ..+++|+.|++++|.... +..+..+++|++|+|++|.-
T Consensus 317 ~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 317 ML--CPSKISPFLHLDFSNNLLTDTVFENC--------GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTTTTC--------CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred cc--chhhCCcccEEEeECCccChhhhhhh--------ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 00 01566778888888887766222222 236677777777776622 13355667777777766643
Q ss_pred cccccccc--cccc----------cccccCCCCccCcCccEeeccccccccccCCCCcCCCCccEEeeccccCCCCCCCC
Q 038165 609 MEEIVSVD--KLRD----------ISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECRQLKKLPLN 676 (731)
Q Consensus 609 l~~l~~~~--~~~~----------~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~L~~lP~~ 676 (731)
...++... .... +.+..|..+. ++|+.|+++++ ++..+|.....+++|++|++++| +++.+|..
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred CcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence 22232210 0000 0011011111 68889999886 67788877778999999999997 68899986
Q ss_pred -CCCCC-CcceEEecc
Q 038165 677 -SSSAK-ERRVVIEGS 690 (731)
Q Consensus 677 -~~~~~-L~~l~i~~~ 690 (731)
....+ |+.+++.++
T Consensus 463 ~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTN 478 (520)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HhccCCcccEEECcCC
Confidence 54454 888888754
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=6.1e-23 Score=233.29 Aligned_cols=264 Identities=17% Similarity=0.134 Sum_probs=132.3
Q ss_pred ccccccceEEEeecCCcccC--CCCCCCCCeeEEEcccCCccccChhhhcCCCCcc--EEEcCCCCCCCcccccccCCc-
Q 038165 331 IEEWEGAKRVSLMGNGIESL--SEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLR--VLSLSENFHLSTLPSGISSLV- 405 (731)
Q Consensus 331 ~~~~~~l~~l~l~~~~~~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~--~L~L~~~~~~~~lP~~i~~l~- 405 (731)
+...++++.+++.+|.+..+ +.+..+++|++|++++|.+..+++..+..+++|+ .|++++| .+..+|.......
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAV 203 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC-CCCEECTTTTTTCE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC-ccCccChhHhhhcc
Confidence 45566778888888877765 5566678888888888877777766677777777 6777766 4333222111100
Q ss_pred ---------------------------------------------------CCCEEeccCCCCCCcchH-HhcCCcCcEe
Q 038165 406 ---------------------------------------------------SLHHLDLSSADITGLPQE-LKALEKLRYL 433 (731)
Q Consensus 406 ---------------------------------------------------~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 433 (731)
+|++|++++|.+..+|.. +..+++|++|
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 283 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence 333344444444443332 4444444444
Q ss_pred ecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhh------------hcCCcccchhhhccCCCCcEEEEEe
Q 038165 434 NLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANV------------LCADAEPLMKELLGLKRLNVLSWTF 501 (731)
Q Consensus 434 ~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~------------~~~~~~~~i~~l~~L~~L~~l~~~~ 501 (731)
++++| .++.+|.. +.++++|++|++++|.+.+.++...... .....+ ...+..+++|+.+++..
T Consensus 284 ~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 284 DLTAT-HLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG--TGCLENLENLRELDLSH 359 (606)
T ss_dssp ECTTS-CCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC--SSTTTTCTTCCEEECCS
T ss_pred eccCC-ccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc--hhhhhccCcCCEEECCC
Confidence 44444 33444443 4444444444444444432211000000 000001 11233444455544443
Q ss_pred echhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCcccee-ecCccccccccccccCCccEEE
Q 038165 502 RSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMK-IDCPEEVKKLFRNGFRSLNTVV 580 (731)
Q Consensus 502 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~l~~L~~L~ 580 (731)
+...............++|+.|++++|......+..+..+++|++|++++|.+.... ...+ ..+++|+.|+
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------~~l~~L~~L~ 431 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF--------QNLHLLKVLN 431 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT--------TTCTTCCEEE
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh--------hCcccCCEEE
Confidence 222111100111122345666666666544444444566666666666666655421 1111 2366777777
Q ss_pred EeccCC--CCCchhhccCCccEEeeeccc
Q 038165 581 LRSCRG--KDLTWLVFVQNLKVLYIGFCG 607 (731)
Q Consensus 581 L~~c~~--~~~~~l~~l~~L~~L~L~~~~ 607 (731)
+++|.. ..+..++.+++|++|+|++|.
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 777766 344556667777777777664
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=4.3e-23 Score=233.26 Aligned_cols=301 Identities=18% Similarity=0.163 Sum_probs=234.9
Q ss_pred ccccceEEEeecCCcccCCC--CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCE
Q 038165 333 EWEGAKRVSLMGNGIESLSE--IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHH 409 (731)
Q Consensus 333 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~ 409 (731)
...+++.+++.++.+..+|. +..+++|++|++++|.+..+++..|..+++|++|+|++| .+..+|. .|+.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 35688999999999988876 578999999999999999998877999999999999999 6766654 5799999999
Q ss_pred EeccCCCCCCcchHH-hcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhh
Q 038165 410 LDLSSADITGLPQEL-KALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKEL 488 (731)
Q Consensus 410 L~L~~~~l~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l 488 (731)
|+|++|.++.+|..+ +++++|++|++++| .+..+++..++++++|++|++++|.+.+. . +
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~---~ 188 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV---------------D---L 188 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC---------------C---G
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc---------------C---h
Confidence 999999999999874 89999999999999 66777766689999999999999987732 2 3
Q ss_pred ccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccc
Q 038165 489 LGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKL 568 (731)
Q Consensus 489 ~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 568 (731)
..+..|+.+++..+.... ......|+.|++++|....... ...++|+.|++++|.+... .++
T Consensus 189 ~~l~~L~~L~l~~n~l~~-------l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l------ 250 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLST-------LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWL------ 250 (597)
T ss_dssp GGCTTCSEEECCSSCCSE-------EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGG------
T ss_pred hhhhhhhhhhcccCcccc-------ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhh------
Confidence 344556555554332211 1223478899998886433322 2236899999999988763 222
Q ss_pred cccccCCccEEEEeccCC--CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccc
Q 038165 569 FRNGFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINL 646 (731)
Q Consensus 569 ~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L 646 (731)
..+++|+.|+|++|.. ..+..++.+++|+.|+|++|. +..+ |.....+++|+.|+|+++ .+
T Consensus 251 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l-------------~~~~~~l~~L~~L~Ls~N-~l 313 (597)
T 3oja_B 251 --LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVAL-------------NLYGQPIPTLKVLDLSHN-HL 313 (597)
T ss_dssp --GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEE-------------ECSSSCCTTCCEEECCSS-CC
T ss_pred --ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCC-------------CcccccCCCCcEEECCCC-CC
Confidence 3489999999999998 446788899999999999873 4444 446678999999999996 67
Q ss_pred cccCCCCcCCCCccEEeeccccCCCCCCCCCCCCCCcceEEecc
Q 038165 647 KSVYPNPLPFPKLKKIEVRECRQLKKLPLNSSSAKERRVVIEGS 690 (731)
Q Consensus 647 ~~l~~~~~~lp~L~~L~l~~C~~L~~lP~~~~~~~L~~l~i~~~ 690 (731)
..+|.....+++|+.|++++|+ +..+|.... .+|+.+.+.++
T Consensus 314 ~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~L~~L~l~~N 355 (597)
T 3oja_B 314 LHVERNQPQFDRLENLYLDHNS-IVTLKLSTH-HTLKNLTLSHN 355 (597)
T ss_dssp CCCGGGHHHHTTCSEEECCSSC-CCCCCCCTT-CCCSEEECCSS
T ss_pred CccCcccccCCCCCEEECCCCC-CCCcChhhc-CCCCEEEeeCC
Confidence 7888777789999999999976 677774332 23899999865
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=226.35 Aligned_cols=123 Identities=24% Similarity=0.249 Sum_probs=110.0
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccCCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSSAD 416 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~~~ 416 (731)
+.++++++.+..+|.... ++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..|+.+++|++|++++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence 678999999999886433 89999999999999999888999999999999999 67666 7899999999999999999
Q ss_pred CCCcchHHhcCCcCcEeeccccccccc--ccccccCCCCCCcEEEeeCcccC
Q 038165 417 ITGLPQELKALEKLRYLNLEYAFNLSI--IPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 417 l~~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
++.+|.. .+++|++|++++| .++. +|.. ++++++|++|++++|.+.
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCC
T ss_pred eeecCcc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcccc
Confidence 9999987 8999999999999 5554 5565 899999999999999876
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=6.7e-23 Score=219.39 Aligned_cols=296 Identities=18% Similarity=0.185 Sum_probs=233.3
Q ss_pred eEEEEcCCccccCcc--ccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCC
Q 038165 316 NFLVRAGVKLTEAPK--IEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSEN 391 (731)
Q Consensus 316 ~~~~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 391 (731)
..+...+..+..+|. +..+++++.+++.+|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++|
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 344445555666665 456789999999999998874 5799999999999999999999888999999999999999
Q ss_pred CCCCccccc-ccCCcCCCEEeccCCCCCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCc
Q 038165 392 FHLSTLPSG-ISSLVSLHHLDLSSADITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVT 469 (731)
Q Consensus 392 ~~~~~lP~~-i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 469 (731)
.+..+|.. ++.+++|++|++++|.++.++. .+..+++|++|++++| .++.++ ++.+++|++|++++|.+...
T Consensus 128 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~l~~~- 201 (390)
T 3o6n_A 128 -DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLSTL- 201 (390)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSCCSEE-
T ss_pred -ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeeccccccccc-
Confidence 88899877 4899999999999999999754 5899999999999999 667665 56789999999999876532
Q ss_pred hhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEec
Q 038165 470 EEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDL 549 (731)
Q Consensus 470 ~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 549 (731)
.....|+.+++..+..... .. .....|+.|++++|...+. ..+..+++|++|++
T Consensus 202 -------------------~~~~~L~~L~l~~n~l~~~---~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 202 -------------------AIPIAVEELDASHNSINVV---RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDL 255 (390)
T ss_dssp -------------------ECCSSCSEEECCSSCCCEE---EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred -------------------CCCCcceEEECCCCeeeec---cc--cccccccEEECCCCCCccc--HHHcCCCCccEEEC
Confidence 2223455555543332211 11 1235899999999975443 46889999999999
Q ss_pred cCCCccceeecCccccccccccccCCccEEEEeccCC-CCCchhhccCCccEEeeecccccccccccccccccccccCCC
Q 038165 550 EYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSE 628 (731)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~ 628 (731)
++|.+..+++..+. .+++|+.|++++|.. ..+.....+++|+.|+|++| .+..+ |..
T Consensus 256 s~n~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~-------------~~~ 313 (390)
T 3o6n_A 256 SYNELEKIMYHPFV--------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHV-------------ERN 313 (390)
T ss_dssp CSSCCCEEESGGGT--------TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCC-------------GGG
T ss_pred CCCcCCCcChhHcc--------ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceec-------------Ccc
Confidence 99998886554443 389999999999998 55555678999999999998 45544 445
Q ss_pred CccCcCccEeeccccccccccCCCCcCCCCccEEeecccc
Q 038165 629 RNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECR 668 (731)
Q Consensus 629 ~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~ 668 (731)
+..+++|++|+++++ .+..++ ...+++|++|++++++
T Consensus 314 ~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred ccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 678999999999996 467665 5678999999998864
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=3.9e-22 Score=224.09 Aligned_cols=141 Identities=28% Similarity=0.337 Sum_probs=115.7
Q ss_pred EEEEcCCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCC
Q 038165 317 FLVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHL 394 (731)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 394 (731)
.+...+..+..+|..- .++++.+++++|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|+|++| .+
T Consensus 35 ~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l 112 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RL 112 (562)
T ss_dssp EEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred EEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cC
Confidence 4445555666666532 278999999999998885 5799999999999999999998877999999999999999 88
Q ss_pred CcccccccCCcCCCEEeccCCCCCCcc--hHHhcCCcCcEeecccccccccccccccCCCCCC--cEEEeeCccc
Q 038165 395 STLPSGISSLVSLHHLDLSSADITGLP--QELKALEKLRYLNLEYAFNLSIIPHQLISGFSNL--EVLRLRGCGC 465 (731)
Q Consensus 395 ~~lP~~i~~l~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~ 465 (731)
..+|.. .+++|++|++++|.++.+| ..++++++|++|++++| .+...+ +..+++| ++|++++|.+
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 899977 8999999999999998864 78999999999999998 444432 4555666 9999999877
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=2.6e-23 Score=236.31 Aligned_cols=311 Identities=14% Similarity=0.152 Sum_probs=194.2
Q ss_pred CCCCCCeeEEEcccCCccc------------------cChhhhc--CCCCccEEEcCCCCCCCcccccccCCcCCCEEec
Q 038165 353 IPTCPRLVTLLVDENPIVE------------------ITDGFFQ--SMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDL 412 (731)
Q Consensus 353 ~~~~~~L~~L~l~~~~l~~------------------~~~~~~~--~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L 412 (731)
+.++++|++|++++|.++. +|.. ++ ++++|++|++++|.....+|..++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 5789999999999999988 7776 67 8999999999999667889999999999999999
Q ss_pred cCCC-CCC--cchHHhcC------CcCcEeecccccccccccc--cccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCc
Q 038165 413 SSAD-ITG--LPQELKAL------EKLRYLNLEYAFNLSIIPH--QLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADA 481 (731)
Q Consensus 413 ~~~~-l~~--lp~~i~~L------~~L~~L~L~~~~~l~~lp~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 481 (731)
++|+ ++. +|..++++ ++|++|++++| .++.+|. . ++++++|++|++++|.+.+ .+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g------------~i 346 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEG------------KL 346 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEE------------EC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCcc------------ch
Confidence 9998 885 99999987 99999999999 6679998 6 8999999999999998772 22
Q ss_pred ccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhcc-ceEEEEeecCCCCccccccccc--CCccEEeccCCCcccee
Q 038165 482 EPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSI-TQSVWVYQCESAPFNVLHLAYM--ENLQELDLEYCNLEEMK 558 (731)
Q Consensus 482 ~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~ 558 (731)
+ .+..+++|+.+++..+... .++......+. |+.|++++|... ..+..+..+ ++|+.|++++|.+....
T Consensus 347 p----~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 347 P----AFGSEIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp C----CCEEEEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred h----hhCCCCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence 3 2334444444444433222 22222222334 777777776644 223333333 36777777777665522
Q ss_pred ecCccccccccccccCCccEEEEeccCC-CCCchhh-ccCCccEEeeecccccccccccccc------------------
Q 038165 559 IDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLV-FVQNLKVLYIGFCGDMEEIVSVDKL------------------ 618 (731)
Q Consensus 559 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~-~l~~L~~L~L~~~~~l~~l~~~~~~------------------ 618 (731)
+..+.. .....-.+++|+.|++++|.. ..+..+. .+++|+.|+|++|. +..++.....
T Consensus 419 p~~l~~-~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 419 GKNFDP-LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TCSSCT-TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred hhhhcc-cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECc
Confidence 222110 000001234566666666655 3333332 35666666665542 2233211000
Q ss_pred -cccccccCCCCc--cCcCccEeeccccccccccCCCCcCCCCccEEeecc------ccCCCCCCCCCCCCC-CcceEEe
Q 038165 619 -RDISGIIGSERN--FFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRE------CRQLKKLPLNSSSAK-ERRVVIE 688 (731)
Q Consensus 619 -~~~~~~~~~~~~--~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~------C~~L~~lP~~~~~~~-L~~l~i~ 688 (731)
..+..+ |..+. .+++|+.|+|+++ .+..+|.....+++|++|++++ +.-...+|......+ |+.+++.
T Consensus 497 ~N~l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 497 FNKLTKL-SDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp SSCCCBC-CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCcCCcc-ChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 001111 33443 6667777777664 4555666666667777777643 334455665554444 6666666
Q ss_pred cc
Q 038165 689 GS 690 (731)
Q Consensus 689 ~~ 690 (731)
++
T Consensus 575 ~N 576 (636)
T 4eco_A 575 SN 576 (636)
T ss_dssp SS
T ss_pred CC
Confidence 55
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.8e-22 Score=229.39 Aligned_cols=126 Identities=23% Similarity=0.326 Sum_probs=96.1
Q ss_pred EEEcCCccccCc--cccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCC
Q 038165 318 LVRAGVKLTEAP--KIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFH 393 (731)
Q Consensus 318 ~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 393 (731)
+...+..+..++ .+.++++++.+++++|.+..++ .+..+++|++|++++|.+..+++..|+++++|++|++++| .
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~ 115 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-K 115 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-C
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-c
Confidence 334444444443 3567788889999888888763 4688888999999888888886666888888999999888 6
Q ss_pred CCccc-ccccCCcCCCEEeccCCCCCC--cchHHhcCCcCcEeeccccccccccc
Q 038165 394 LSTLP-SGISSLVSLHHLDLSSADITG--LPQELKALEKLRYLNLEYAFNLSIIP 445 (731)
Q Consensus 394 ~~~lP-~~i~~l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp 445 (731)
+..+| ..++++++|++|++++|.+.. +|..++++++|++|++++| .++.++
T Consensus 116 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~ 169 (606)
T 3vq2_A 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTIT 169 (606)
T ss_dssp CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEEC
T ss_pred cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecC
Confidence 66665 678888888888888888874 7888888888888888887 444443
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.5e-23 Score=240.49 Aligned_cols=309 Identities=15% Similarity=0.151 Sum_probs=192.0
Q ss_pred CCCCCCeeEEEcccCCccc------------------cChhh-hcCCCCccEEEcCCCCCCCcccccccCCcCCCEEecc
Q 038165 353 IPTCPRLVTLLVDENPIVE------------------ITDGF-FQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLS 413 (731)
Q Consensus 353 ~~~~~~L~~L~l~~~~l~~------------------~~~~~-~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~ 413 (731)
+.++++|++|++++|.++. +|..+ |..+++|++|+|++|.....+|..|+++++|++|+|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 5678889999999998887 77663 3388999999999886677889889999999999999
Q ss_pred CCC-CCC--cchHHhcCC-------cCcEeecccccccccccc--cccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCc
Q 038165 414 SAD-ITG--LPQELKALE-------KLRYLNLEYAFNLSIIPH--QLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADA 481 (731)
Q Consensus 414 ~~~-l~~--lp~~i~~L~-------~L~~L~L~~~~~l~~lp~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 481 (731)
+|+ ++. +|..++++. +|++|++++| .+..+|. . ++++++|++|++++|.+..+
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~-l~~L~~L~~L~Ls~N~l~~l------------- 588 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASAS-LQKMVKLGLLDCVHNKVRHL------------- 588 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHH-HTTCTTCCEEECTTSCCCBC-------------
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhh-hhcCCCCCEEECCCCCcccc-------------
Confidence 997 875 888888776 8999999998 5668887 5 88999999999998876532
Q ss_pred ccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhcc-ceEEEEeecCCCCcccccccccC--CccEEeccCCCcccee
Q 038165 482 EPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSI-TQSVWVYQCESAPFNVLHLAYME--NLQELDLEYCNLEEMK 558 (731)
Q Consensus 482 ~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~ 558 (731)
+ .+..+++|+.+++..+... .++......+. |+.|++++|... ..+..+..++ +|+.|++++|.+....
T Consensus 589 p----~~~~L~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 589 E----AFGTNVKLTDLKLDYNQIE---EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp C----CCCTTSEESEEECCSSCCS---CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred h----hhcCCCcceEEECcCCccc---cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcc
Confidence 2 4555666666766654433 23322233345 889999988754 3334444443 4888888888876532
Q ss_pred ecCccccccccccccCCccEEEEeccCC-CCCchhh-ccCCccEEeeeccccccccccccccc-----------------
Q 038165 559 IDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLV-FVQNLKVLYIGFCGDMEEIVSVDKLR----------------- 619 (731)
Q Consensus 559 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~-~l~~L~~L~L~~~~~l~~l~~~~~~~----------------- 619 (731)
+.+... .....+++|+.|+|++|.. ..+..+. .+++|+.|+|++| .+..++...+.+
T Consensus 661 p~l~~~---l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 661 RNISCS---MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp SSCSSC---TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred ccchhh---hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECC
Confidence 222110 1111234677777777766 4444443 5667777777665 333332211000
Q ss_pred --ccccccCCCCc--cCcCccEeeccccccccccCCCCcCCCCccEEeecc------ccCCCCCCCCCCCCC-CcceEEe
Q 038165 620 --DISGIIGSERN--FFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRE------CRQLKKLPLNSSSAK-ERRVVIE 688 (731)
Q Consensus 620 --~~~~~~~~~~~--~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~------C~~L~~lP~~~~~~~-L~~l~i~ 688 (731)
.+..+ |..+. .+++|+.|+|+++ .+..+|.....+++|+.|++++ |.-...+|......+ |+.+.+.
T Consensus 737 ~N~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 737 FNKLTSL-SDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp SSCCCCC-CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCCCccc-hHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 00111 33333 5555555555553 3444554445555555555544 333344454444333 5555555
Q ss_pred cc
Q 038165 689 GS 690 (731)
Q Consensus 689 ~~ 690 (731)
+|
T Consensus 815 ~N 816 (876)
T 4ecn_A 815 SN 816 (876)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.2e-22 Score=222.40 Aligned_cols=321 Identities=16% Similarity=0.193 Sum_probs=232.4
Q ss_pred EEEcCCccccC--ccccccccceEEEeecCCcc-cC--CCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCC
Q 038165 318 LVRAGVKLTEA--PKIEEWEGAKRVSLMGNGIE-SL--SEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENF 392 (731)
Q Consensus 318 ~~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~-~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 392 (731)
+...+..+..+ ..+...++++.+++.+|.+. .+ ..+..+++|++|++++|.+..+++..|..+++|++|++++|
T Consensus 35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n- 113 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC- 113 (455)
T ss_dssp EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-
T ss_pred EEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-
Confidence 33344444433 24567789999999999875 33 34789999999999999998887777999999999999999
Q ss_pred CCCc-cccc--ccCCcCCCEEeccCCCCCCc-chH-HhcCCcCcEeecccccccccccccccCCC---------------
Q 038165 393 HLST-LPSG--ISSLVSLHHLDLSSADITGL-PQE-LKALEKLRYLNLEYAFNLSIIPHQLISGF--------------- 452 (731)
Q Consensus 393 ~~~~-lP~~--i~~l~~L~~L~L~~~~l~~l-p~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l--------------- 452 (731)
.+.. .|.. ++.+++|++|++++|.+..+ |.. +.++++|++|++++|. +..++...+..+
T Consensus 114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l 192 (455)
T 3v47_A 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITL 192 (455)
T ss_dssp CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBC
T ss_pred CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcc
Confidence 6653 5555 88999999999999999987 555 8899999999999994 444433324333
Q ss_pred -------------------CCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHH----Hh
Q 038165 453 -------------------SNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAV----QK 509 (731)
Q Consensus 453 -------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~----~~ 509 (731)
++|++|++++|.+.+. .+..+.......+|+.+.+..+..... ..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES------------MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp TTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH------------HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccchhhccccccccccccceeeeEecCCCccccc------------chhhhhccccccceeeEeeccccccccccchhh
Confidence 5667777777665522 123333333345555555442211000 00
Q ss_pred hh-----CCch-hhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEec
Q 038165 510 FL-----KYPK-LVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRS 583 (731)
Q Consensus 510 l~-----~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 583 (731)
+. .... ....|+.|++++|......+..+..+++|++|++++|.+..+++..+. .+++|+.|++++
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~Ls~ 332 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--------GLTHLLKLNLSQ 332 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECCS
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc--------CcccCCEEECCC
Confidence 00 0000 125799999999987766677799999999999999999887655543 389999999999
Q ss_pred cCC--CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCC-cCCCCcc
Q 038165 584 CRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNP-LPFPKLK 660 (731)
Q Consensus 584 c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~-~~lp~L~ 660 (731)
|.. ..+..+..+++|++|+|++|. +..+. |..+..+++|++|+++++ .+..++... ..+++|+
T Consensus 333 N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~------------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 333 NFLGSIDSRMFENLDKLEVLDLSYNH-IRALG------------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp SCCCEECGGGGTTCTTCCEEECCSSC-CCEEC------------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred CccCCcChhHhcCcccCCEEECCCCc-ccccC------------hhhccccccccEEECCCC-ccccCCHhHhccCCccc
Confidence 998 445678899999999999984 33331 567889999999999995 688887654 6789999
Q ss_pred EEeeccccCCCCCC
Q 038165 661 KIEVRECRQLKKLP 674 (731)
Q Consensus 661 ~L~l~~C~~L~~lP 674 (731)
+|++++++--...|
T Consensus 399 ~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 399 KIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEccCCCcccCCC
Confidence 99999987444333
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=5.1e-23 Score=223.85 Aligned_cols=266 Identities=17% Similarity=0.156 Sum_probs=152.4
Q ss_pred ccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEE
Q 038165 331 IEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHL 410 (731)
Q Consensus 331 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L 410 (731)
...+++++.++++++.+..++.+..+++|++|++++|.++.++ ++.+++|++|++++| .+..+| ++.+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence 3445677777777777777766677777777777777766664 566777777777777 566664 6677777777
Q ss_pred eccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhcc
Q 038165 411 DLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLG 490 (731)
Q Consensus 411 ~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 490 (731)
++++|.++.+| ++++++|++|++++| .++.+| ++.+++|++|++++|...+ .+ .+..
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~------------~~-----~~~~ 168 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKIT------------KL-----DVTP 168 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCC------------CC-----CCTT
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccc------------cc-----cccc
Confidence 77777777765 667777777777777 455553 5667777777777764431 11 2344
Q ss_pred CCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccc
Q 038165 491 LKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFR 570 (731)
Q Consensus 491 L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 570 (731)
++.|+.+++..+....+. ....+.|+.|++++|..... .+..+++|+.|++++|.+..+|.
T Consensus 169 l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip~----------- 229 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEIDV----------- 229 (457)
T ss_dssp CTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCCC-----------
T ss_pred CCcCCEEECCCCccceec-----cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccCc-----------
Confidence 555555555443322211 11224666777766653332 36666777777777776666431
Q ss_pred cccCCccEEEEeccCCCCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccC
Q 038165 571 NGFRSLNTVVLRSCRGKDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVY 650 (731)
Q Consensus 571 ~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 650 (731)
..+++|+.|++++|.....+ ++.+++|+.|+++++ .++.+.... ......+ | ...+++|+.|++++|+.+..++
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~~-n~~~~~~-~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQT-DLLEIDLTH-NTQLIYF-Q--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECTTC-CCSCCCCTT-CTTCCEE-E--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred cccCCCCEEEeeCCcCCCcC-HHHCCCCCEEeccCC-CCCEEECCC-CccCCcc-c--ccccccCCEEECCCCcccceec
Confidence 22566777777766662221 344555555444332 222221100 0000000 1 3455666666666666555554
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=8.2e-23 Score=230.92 Aligned_cols=296 Identities=18% Similarity=0.185 Sum_probs=232.0
Q ss_pred eEEEEcCCccccCcc--ccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCC
Q 038165 316 NFLVRAGVKLTEAPK--IEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSEN 391 (731)
Q Consensus 316 ~~~~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 391 (731)
..+...+..+..+|. +..+++++.+++.+|.+..++ .+..+++|++|++++|.+..+++..|+.+++|++|+|++|
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence 334444445555554 456789999999999998875 5799999999999999999999988999999999999999
Q ss_pred CCCCccccc-ccCCcCCCEEeccCCCCCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCc
Q 038165 392 FHLSTLPSG-ISSLVSLHHLDLSSADITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVT 469 (731)
Q Consensus 392 ~~~~~lP~~-i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 469 (731)
.+..+|.. |+.+++|++|+|++|.+..+|. .++.+++|++|++++| .++.+| ++.+++|++|++++|.+.+.
T Consensus 134 -~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l~~l- 207 (597)
T 3oja_B 134 -DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLSTL- 207 (597)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCCSEE-
T ss_pred -CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCccccc-
Confidence 88888877 5899999999999999999765 5899999999999999 677776 56789999999999876532
Q ss_pred hhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEec
Q 038165 470 EEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDL 549 (731)
Q Consensus 470 ~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 549 (731)
.....|+.+++..+..... .. .....|+.|++++|...+ +..+..+++|+.|++
T Consensus 208 -------------------~~~~~L~~L~ls~n~l~~~---~~--~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~L 261 (597)
T 3oja_B 208 -------------------AIPIAVEELDASHNSINVV---RG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDL 261 (597)
T ss_dssp -------------------ECCTTCSEEECCSSCCCEE---EC--SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEEC
T ss_pred -------------------cCCchhheeeccCCccccc---cc--ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEEC
Confidence 2233455555543332111 11 112479999999987544 356888999999999
Q ss_pred cCCCccceeecCccccccccccccCCccEEEEeccCC-CCCchhhccCCccEEeeecccccccccccccccccccccCCC
Q 038165 550 EYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSE 628 (731)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~ 628 (731)
++|.+..+++..+. .+++|+.|+|++|.. ..+..+..+++|+.|+|++|. +..+ |..
T Consensus 262 s~N~l~~~~~~~~~--------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i-------------~~~ 319 (597)
T 3oja_B 262 SYNELEKIMYHPFV--------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHV-------------ERN 319 (597)
T ss_dssp CSSCCCEEESGGGT--------TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCC-------------GGG
T ss_pred CCCccCCCCHHHhc--------CccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCcc-------------Ccc
Confidence 99999886554443 389999999999998 555666789999999999884 3444 456
Q ss_pred CccCcCccEeeccccccccccCCCCcCCCCccEEeecccc
Q 038165 629 RNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECR 668 (731)
Q Consensus 629 ~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~ 668 (731)
+..+++|+.|+|+++ .+..++ ...+++|+.|++++++
T Consensus 320 ~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 320 QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred cccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 778999999999996 466664 5678999999999865
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=6.9e-23 Score=214.12 Aligned_cols=239 Identities=18% Similarity=0.220 Sum_probs=159.7
Q ss_pred cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccC
Q 038165 336 GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSS 414 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~ 414 (731)
.++.+++.++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..|+.+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC
Confidence 5788899988888877543 478999999999998888777899999999999999 67665 77899999999999999
Q ss_pred CCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCC
Q 038165 415 ADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRL 494 (731)
Q Consensus 415 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L 494 (731)
|.++.+|..+. ++|++|++++| .++.+|...+.++++|++|++++|.+... ......+..+ +|
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l-~L 174 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL-KL 174 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC-CC
T ss_pred CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC-cc
Confidence 99999998765 89999999999 67888877789999999999999877521 0111122222 33
Q ss_pred cEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccC
Q 038165 495 NVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFR 574 (731)
Q Consensus 495 ~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 574 (731)
+.+++..+.... ++. ...+.|+.|++++|......+..+..+++|++|++++|.+..++...+. .++
T Consensus 175 ~~L~l~~n~l~~---l~~--~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--------~l~ 241 (332)
T 2ft3_A 175 NYLRISEAKLTG---IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS--------FLP 241 (332)
T ss_dssp SCCBCCSSBCSS---CCS--SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG--------GCT
T ss_pred CEEECcCCCCCc---cCc--cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh--------CCC
Confidence 333333222111 111 0113555555555554444444455556666666666655554332222 255
Q ss_pred CccEEEEeccCC-CCCchhhccCCccEEeeecc
Q 038165 575 SLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFC 606 (731)
Q Consensus 575 ~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~ 606 (731)
+|+.|++++|.. ..+.++..+++|+.|+++++
T Consensus 242 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence 666666666655 44445555666666666554
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=3.6e-22 Score=230.14 Aligned_cols=274 Identities=20% Similarity=0.118 Sum_probs=181.6
Q ss_pred EEEcCCccccCccccccccceEEEeecCCcccCCC--CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC
Q 038165 318 LVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSE--IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS 395 (731)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 395 (731)
+...+..+..+|..- .++++++++++|.+..++. +..+++|++|++++|.+..+++..|..+++|++|++++| .+.
T Consensus 9 ~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 86 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELS 86 (680)
T ss_dssp EECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCC
T ss_pred eECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccC
Confidence 333444555666432 2689999999999988764 789999999999999999998888999999999999999 888
Q ss_pred cccc-cccCCcCCCEEeccCCCCCCcc-hHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhh
Q 038165 396 TLPS-GISSLVSLHHLDLSSADITGLP-QELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEE 473 (731)
Q Consensus 396 ~lP~-~i~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 473 (731)
.+|. .|+.+++|++|++++|.++.+| ..++++++|++|++++| .+..++...++++++|++|++++|.+.+.++...
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence 8887 5999999999999999999987 56899999999999999 5566655558899999999999998876543321
Q ss_pred hhh--------------hcCCcccchhhhccCCCCcEEEEEeechh--HHHhhhCCchhhccceEEEEeecCCCCccccc
Q 038165 474 ANV--------------LCADAEPLMKELLGLKRLNVLSWTFRSSL--AVQKFLKYPKLVSITQSVWVYQCESAPFNVLH 537 (731)
Q Consensus 474 ~~~--------------~~~~~~~~i~~l~~L~~L~~l~~~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 537 (731)
... .....+. .+..+..|+.+.+...... ....+... -..+.|+.|+++++......+..
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~~~~~~-l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPG---CFHAIGRLFGLFLNNVQLGPSLTEKLCLE-LANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTT---GGGGSSEECEEECTTCCCHHHHHHHHHHH-HTTSCCCEEECTTSCCCEECTTT
T ss_pred hccccccccEEECCCCcccccChh---hhhhhhhhhhhhccccccChhhHHHHHHH-hhhccccEEEccCCcccccChhH
Confidence 100 0000111 1222222222222111100 00000000 00146677777766544444445
Q ss_pred ccccCC--ccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC--CCCchhhccCCccEEeeecc
Q 038165 538 LAYMEN--LQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFC 606 (731)
Q Consensus 538 l~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~ 606 (731)
+..++. |+.|++++|.+..+++..+. .+++|+.|++++|.. ..+..+..+++|+.|+++++
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFA--------WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTT--------TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred hhccCcCCCCEEECCCCCcCccCccccc--------CcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 555543 77777777776665444332 256677777776665 33445666666666666543
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=6.2e-22 Score=222.51 Aligned_cols=127 Identities=22% Similarity=0.282 Sum_probs=111.6
Q ss_pred cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccC
Q 038165 336 GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSS 414 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~ 414 (731)
..+.++++++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..|+.+++|++|++++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCC
Confidence 4489999999999988633 389999999999999999888999999999999999 77776 67899999999999999
Q ss_pred CCCCCcchHHhcCCcCcEeecccccccccccc-cccCCCCCCcEEEeeCcccCC
Q 038165 415 ADITGLPQELKALEKLRYLNLEYAFNLSIIPH-QLISGFSNLEVLRLRGCGCCS 467 (731)
Q Consensus 415 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~ 467 (731)
|.++.+|.. .+++|++|++++| .++.+|. ..++++++|++|++++|.+..
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc
Confidence 999999987 8999999999999 5677652 338999999999999998763
No 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=5.2e-23 Score=239.42 Aligned_cols=323 Identities=20% Similarity=0.142 Sum_probs=189.2
Q ss_pred cccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEe
Q 038165 332 EEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLD 411 (731)
Q Consensus 332 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~ 411 (731)
...++++.+++.+|.+.....+..+++|++|++++|.+...++. +..+++|++|++++|.....+|..++.+++|++|+
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 34456666666666666555556677777777777766554444 66677777777777733335666677777777777
Q ss_pred ccCCCCCC-cchHHhcCCcCcEeecccccccccccccccCC-CCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhc
Q 038165 412 LSSADITG-LPQELKALEKLRYLNLEYAFNLSIIPHQLISG-FSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELL 489 (731)
Q Consensus 412 L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 489 (731)
+++|.+.. +|.. .+++|++|++++|.....+|.. +.. +++|++|++++|.+.+. .+..+ .
T Consensus 254 Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~-~~~~~~~L~~L~Ls~n~l~~~------------~p~~~---~ 315 (768)
T 3rgz_A 254 ISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF-LSGACDTLTGLDLSGNHFYGA------------VPPFF---G 315 (768)
T ss_dssp CCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCC-SCTTCTTCSEEECCSSEEEEC------------CCGGG---G
T ss_pred CCCCcccCccCcc--ccCCCCEEECcCCccCCccCHH-HHhhcCcCCEEECcCCcCCCc------------cchHH---h
Confidence 77776654 3322 5666777777766443466665 333 47777777777766522 23333 3
Q ss_pred cCCCCcEEEEEeec---hhHHHhhhCCchhhccceEEEEeecCCCCcccccccccC-CccEEeccCCCccceeecCccc-
Q 038165 490 GLKRLNVLSWTFRS---SLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYME-NLQELDLEYCNLEEMKIDCPEE- 564 (731)
Q Consensus 490 ~L~~L~~l~~~~~~---~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~- 564 (731)
.++.|+.+++..+. ......+.. .++|+.|++++|...+..+..+..++ +|+.|++++|.+....+.....
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~----l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLK----MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTT----CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred cCCCccEEECCCCcccCcCCHHHHhc----CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 33444444433221 111111211 23566666665543333333344444 5555555555443311111000
Q ss_pred ----c-------------ccccccccCCccEEEEeccCC--CCCchhhccCCccEEeeeccccccccccccccccccccc
Q 038165 565 ----V-------------KKLFRNGFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGII 625 (731)
Q Consensus 565 ----~-------------~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~ 625 (731)
+ .+.....+++|+.|++++|.. ..+..++.+++|+.|+|++|.....+
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~------------- 458 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI------------- 458 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC-------------
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC-------------
Confidence 0 000012356666666666665 44555666666666666666432222
Q ss_pred CCCCccCcCccEeeccccccccccCCCCcCCCCccEEeeccccCCCCCCCCCCCCC-CcceEEecc
Q 038165 626 GSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECRQLKKLPLNSSSAK-ERRVVIEGS 690 (731)
Q Consensus 626 ~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~L~~lP~~~~~~~-L~~l~i~~~ 690 (731)
|..+..+++|++|+++++.-...+|.....+++|++|++++|.-...+|......+ |+.+++.+|
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 56778889999999998765556777777899999999999987768887666655 899988876
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=3.5e-22 Score=208.63 Aligned_cols=240 Identities=20% Similarity=0.253 Sum_probs=165.9
Q ss_pred cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccC
Q 038165 336 GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSS 414 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~ 414 (731)
+++.+++.++.+..+|... .++|++|++++|.++.+++..|..+++|++|++++| .+..+ |..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCC
Confidence 6778888888887776532 368899999999988888877888999999999998 66665 77889999999999999
Q ss_pred CCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCC
Q 038165 415 ADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRL 494 (731)
Q Consensus 415 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L 494 (731)
|.++.+|..+. ++|++|++++| .++.++...+.++++|++|++++|.+... ......+..+++|
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l~~L 173 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSS-------------GIENGAFQGMKKL 173 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGG-------------GBCTTGGGGCTTC
T ss_pred CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCcc-------------CcChhhccCCCCc
Confidence 99988887665 78999999988 66777776688899999999998876521 1223344556666
Q ss_pred cEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccC
Q 038165 495 NVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFR 574 (731)
Q Consensus 495 ~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 574 (731)
+.+.+..+.... ++. ....+|+.|++++|......+..+..+++|++|++++|.+..++...+. .++
T Consensus 174 ~~L~l~~n~l~~---l~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l~ 240 (330)
T 1xku_A 174 SYIRIADTNITT---IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--------NTP 240 (330)
T ss_dssp CEEECCSSCCCS---CCS--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--------GST
T ss_pred CEEECCCCcccc---CCc--cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc--------CCC
Confidence 666554333221 111 1114566666666654444444566666677777776666654443332 256
Q ss_pred CccEEEEeccCC-CCCchhhccCCccEEeeecc
Q 038165 575 SLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFC 606 (731)
Q Consensus 575 ~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~ 606 (731)
+|+.|++++|.. ..+.++..+++|++|++++|
T Consensus 241 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred CCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence 666677766666 55556666666666666665
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=2.4e-21 Score=227.79 Aligned_cols=148 Identities=20% Similarity=0.301 Sum_probs=123.9
Q ss_pred EEEEcCCccccCccccccccceEEEeecCCcccC--CCCCCCCCeeEEEcccCC-ccccChhhhcCCCCccEEEcCCCCC
Q 038165 317 FLVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESL--SEIPTCPRLVTLLVDENP-IVEITDGFFQSMSSLRVLSLSENFH 393 (731)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l--~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~~~~ 393 (731)
.+.........+|. ..++++.+++++|.+..+ ..+..+++|++|++++|. ...+++..|.++++|++|+|++| .
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~ 84 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-K 84 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-C
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-c
Confidence 44445666777777 557999999999999886 467999999999999995 66776777999999999999999 6
Q ss_pred CCcc-cccccCCcCCCEEeccCCCCCC-cchH--HhcCCcCcEeecccccccccc-cccccCCCCCCcEEEeeCcccCCC
Q 038165 394 LSTL-PSGISSLVSLHHLDLSSADITG-LPQE--LKALEKLRYLNLEYAFNLSII-PHQLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 394 ~~~l-P~~i~~l~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
+..+ |..|+++++|++|+|++|.+.. +|.. ++++++|++|++++| .+..+ |...++++++|++|++++|.+.+.
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCee
Confidence 6655 8899999999999999999987 5665 899999999999999 44554 333489999999999999988744
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.1e-22 Score=209.39 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=54.2
Q ss_pred cCCccEEEEeccCC-CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCC
Q 038165 573 FRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYP 651 (731)
Q Consensus 573 l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~ 651 (731)
+++|+.|++++|.. ..++.++.+++|++|+|++|.....+ |..+..+++|++|+|++|+.+..+|.
T Consensus 205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~-------------p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-------------PPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBC-------------CCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhh-------------HHHhcCCCCCCEEECCCCCchhhcch
Confidence 45555555555555 44444555555555555555443333 33455555555555555555555555
Q ss_pred CCcCCCCccEEeeccccCCCCCCCCCCCCC-CcceE
Q 038165 652 NPLPFPKLKKIEVRECRQLKKLPLNSSSAK-ERRVV 686 (731)
Q Consensus 652 ~~~~lp~L~~L~l~~C~~L~~lP~~~~~~~-L~~l~ 686 (731)
....+++|++|++++|+.+..+|.....++ ++.+.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 555555566666666655555555444433 44433
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=3.4e-22 Score=207.91 Aligned_cols=228 Identities=21% Similarity=0.266 Sum_probs=152.2
Q ss_pred CCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecc
Q 038165 357 PRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLE 436 (731)
Q Consensus 357 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 436 (731)
++++.|++++|.+..+|.. +..+++|++|+|++| .+..+|..++.+++|++|++++|.++.+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4455555555555555544 334555555555555 44455555555555555555555555555555555555555555
Q ss_pred cccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchh
Q 038165 437 YAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKL 516 (731)
Q Consensus 437 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~ 516 (731)
+|..++.+|.. ++. .. ..+.+..+
T Consensus 159 ~n~~~~~~p~~-~~~------~~------------------------~~~~~~~l------------------------- 182 (328)
T 4fcg_A 159 ACPELTELPEP-LAS------TD------------------------ASGEHQGL------------------------- 182 (328)
T ss_dssp EETTCCCCCSC-SEE------EC-------------------------CCCEEES-------------------------
T ss_pred CCCCccccChh-Hhh------cc------------------------chhhhccC-------------------------
Confidence 55444444443 211 00 00001112
Q ss_pred hccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC--CCCchhhc
Q 038165 517 VSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWLVF 594 (731)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~ 594 (731)
++|+.|++++|... ..+..+..+++|++|++++|.+..++..+ ..+++|+.|++++|.. ..+.+++.
T Consensus 183 -~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l---------~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 183 -VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAI---------HHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp -TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGG---------GGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred -CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhh---------ccCCCCCEEECcCCcchhhhHHHhcC
Confidence 24455555555433 33445888999999999999998765543 3489999999999988 66778899
Q ss_pred cCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCCcCCCCccEEeecc
Q 038165 595 VQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRE 666 (731)
Q Consensus 595 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~ 666 (731)
+++|+.|+|++|.....+ |..+..+++|++|+|++|+.+..+|.....+++|+.+.+..
T Consensus 252 l~~L~~L~L~~n~~~~~~-------------p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTL-------------PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCCEEECTTCTTCCBC-------------CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCCEEECCCCCchhhc-------------chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 999999999999877665 66789999999999999999999999999999999998864
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=1.2e-21 Score=219.78 Aligned_cols=135 Identities=16% Similarity=0.261 Sum_probs=111.4
Q ss_pred cccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCc--ccccccCCc
Q 038165 330 KIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLST--LPSGISSLV 405 (731)
Q Consensus 330 ~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~--lP~~i~~l~ 405 (731)
.+..+++++.+++++|.+..++ .+..+++|++|++++|.+..+++..|+.+++|++|++++| .+.. .|..+++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccC
Confidence 4567789999999999998875 4799999999999999999999988999999999999999 6764 577899999
Q ss_pred CCCEEeccCCC-CCCcc-hHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 406 SLHHLDLSSAD-ITGLP-QELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 406 ~L~~L~L~~~~-l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
+|++|++++|. +..+| ..+.++++|++|++++|......|.. ++.+++|++|++++|...
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBST
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCccc
Confidence 99999999997 67776 47899999999999998543335554 677666666666665543
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=2.7e-21 Score=222.78 Aligned_cols=244 Identities=15% Similarity=0.133 Sum_probs=182.7
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccCCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSSAD 416 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~~~ 416 (731)
+.++.+++.+..+|... .+++++|++++|.+..+++..|.++++|++|++++| .+..+ |..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc
Confidence 46788888888887533 389999999999999999888999999999999999 55554 7778999999999999999
Q ss_pred CCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCc
Q 038165 417 ITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLN 495 (731)
Q Consensus 417 l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~ 495 (731)
++.+|. .++++++|++|++++| .++.+|+..++++++|++|++++|.+.+. ....+..+++|+
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------~~~~~~~l~~L~ 148 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSST---------------KLGTQVQLENLQ 148 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCC---------------CCCSSSCCTTCC
T ss_pred cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCccccc---------------CchhhcccccCC
Confidence 999997 4999999999999999 67888866699999999999999988743 222345667777
Q ss_pred EEEEEeechhH--HHhhhCCchhhccceEEEEeecCCCCccccccccc---------------------------CCccE
Q 038165 496 VLSWTFRSSLA--VQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYM---------------------------ENLQE 546 (731)
Q Consensus 496 ~l~~~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l---------------------------~~L~~ 546 (731)
.+++..+.... ...+.. ...+.|+.|++++|......+..+..+ ++|+.
T Consensus 149 ~L~L~~n~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDI--FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp EEECCSSCCCCBCHHHHGG--GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCE
T ss_pred EEEccCCcccccCHHHhhc--cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccE
Confidence 77766443211 111110 012589999999887555554444444 45666
Q ss_pred EeccCCCccceeecCccccccccccccCCccEEEEeccCC--CCCchhhccCCccEEeeeccc
Q 038165 547 LDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCG 607 (731)
Q Consensus 547 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~ 607 (731)
|++++|.+...++.++.. ...++|+.|++++|.. ..+.+++.+++|++|++++|.
T Consensus 227 L~L~~n~l~~~~~~~~~~------l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTTFLG------LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp EECTTSCCCEECTTTTGG------GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred EEccCCcccccChhHhhc------cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 666666665544443321 1124599999999988 445678899999999999874
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.4e-21 Score=210.66 Aligned_cols=308 Identities=15% Similarity=0.125 Sum_probs=228.9
Q ss_pred EEEEcCCccccCccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCc
Q 038165 317 FLVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLST 396 (731)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 396 (731)
.+...+..+..+|.+..+++++.+++.+|.+..++ +..+++|++|++++|.+..++ ++.+++|++|++++| .+..
T Consensus 46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~ 120 (457)
T 3bz5_A 46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTK 120 (457)
T ss_dssp EEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSC
T ss_pred EEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCe
Confidence 34444555666677788899999999999999986 899999999999999998875 788999999999999 8888
Q ss_pred ccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhh
Q 038165 397 LPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANV 476 (731)
Q Consensus 397 lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 476 (731)
+| ++.+++|++|++++|+++.+| ++++++|++|++++|..++.++ ++.+++|++|++++|.+.+.
T Consensus 121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-------- 185 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-------- 185 (457)
T ss_dssp CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC--------
T ss_pred ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee--------
Confidence 86 899999999999999999986 8899999999999997777773 78999999999999988732
Q ss_pred hcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccc
Q 038165 477 LCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEE 556 (731)
Q Consensus 477 ~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 556 (731)
+ +..++.|+.+.+..+..... . ....+.|+.|++++|...+. .+..+++|+.|++++|.+..
T Consensus 186 -----~-----l~~l~~L~~L~l~~N~l~~~-~----l~~l~~L~~L~Ls~N~l~~i---p~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 186 -----D-----VSQNKLLNRLNCDTNNITKL-D----LNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp -----C-----CTTCTTCCEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred -----c-----cccCCCCCEEECcCCcCCee-c----cccCCCCCEEECcCCccccc---CccccCCCCEEEeeCCcCCC
Confidence 1 45566777777665443322 1 22336899999999986553 28889999999999999988
Q ss_pred eeecCccccccccccccCCccEEEEeccCC-CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCc
Q 038165 557 MKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQL 635 (731)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L 635 (731)
+++..+..+..+. -...+|+.|++++|.. ..+ +.+.+++|+.|++++|..+..++. ....+..+ .+..+++|
T Consensus 248 ~~~~~l~~L~~L~-l~~n~L~~L~l~~n~~~~~~-~~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L---~l~~~~~L 320 (457)
T 3bz5_A 248 LDVSTLSKLTTLH-CIQTDLLEIDLTHNTQLIYF-QAEGCRKIKELDVTHNTQLYLLDC--QAAGITEL---DLSQNPKL 320 (457)
T ss_dssp CCCTTCTTCCEEE-CTTCCCSCCCCTTCTTCCEE-ECTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCC---CCTTCTTC
T ss_pred cCHHHCCCCCEEe-ccCCCCCEEECCCCccCCcc-cccccccCCEEECCCCcccceecc--CCCcceEe---chhhcccC
Confidence 6544322111000 0012445555555554 222 246789999999999988777653 11222222 46677888
Q ss_pred cEeeccccccccccCCCCcCCCCccEEeeccccCCCCC
Q 038165 636 ESLSVWRGINLKSVYPNPLPFPKLKKIEVRECRQLKKL 673 (731)
Q Consensus 636 ~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~L~~l 673 (731)
++|+++++ ++..++ ...+++|+.|+++++ +++.+
T Consensus 321 ~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 321 VYLYLNNT-ELTELD--VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp CEEECTTC-CCSCCC--CTTCTTCSEEECCSS-CCCBC
T ss_pred CEEECCCC-cccccc--cccCCcCcEEECCCC-CCCCc
Confidence 88888874 566663 667899999998763 34443
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=4.7e-22 Score=205.53 Aligned_cols=128 Identities=20% Similarity=0.299 Sum_probs=60.8
Q ss_pred cceEEEeecCCccc---C-CCCCCCCCeeEEEccc-CCccccChhhhcCCCCccEEEcCCCCCCC-cccccccCCcCCCE
Q 038165 336 GAKRVSLMGNGIES---L-SEIPTCPRLVTLLVDE-NPIVEITDGFFQSMSSLRVLSLSENFHLS-TLPSGISSLVSLHH 409 (731)
Q Consensus 336 ~l~~l~l~~~~~~~---l-~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~lP~~i~~l~~L~~ 409 (731)
+++.+++.++.+.. + +.+..+++|++|++++ |.+....+..+..+++|++|++++| .+. .+|..++.+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCE
Confidence 45555555555542 2 2334455555555553 4433222222445555555555555 332 44555555555555
Q ss_pred EeccCCCCC-CcchHHhcCCcCcEeecccccccccccccccCCCC-CCcEEEeeCccc
Q 038165 410 LDLSSADIT-GLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFS-NLEVLRLRGCGC 465 (731)
Q Consensus 410 L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~-~L~~L~l~~~~~ 465 (731)
|++++|.++ .+|..+..+++|++|++++|.....+|.. ++.++ +|++|++++|.+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee
Confidence 555555544 34555555555555555555222244444 44444 555555555443
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=7.8e-21 Score=223.47 Aligned_cols=309 Identities=16% Similarity=0.139 Sum_probs=201.7
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccCCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSSAD 416 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~~~ 416 (731)
+.++.+++++..+|. ..++|++|++++|.++.+++..|..+++|++|+|++|.....+ |..|+++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 467778888999988 6789999999999999987777999999999999999666677 7789999999999999999
Q ss_pred CCCc-chHHhcCCcCcEeecccccccccccc-cccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCC
Q 038165 417 ITGL-PQELKALEKLRYLNLEYAFNLSIIPH-QLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRL 494 (731)
Q Consensus 417 l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L 494 (731)
+..+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+.+.. ....+.++++|
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~--------------~~~~~~~L~~L 150 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--------------LHPSFGKLNSL 150 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC--------------CCGGGGTCSSC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc--------------cchhHhhCCCC
Confidence 9986 78899999999999999944333443 34889999999999999887431 11245666777
Q ss_pred cEEEEEeechhHH--HhhhCCchhhccceEEEEeecCCCCcccccccccCC------ccEEeccCC--------------
Q 038165 495 NVLSWTFRSSLAV--QKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMEN------LQELDLEYC-------------- 552 (731)
Q Consensus 495 ~~l~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~-------------- 552 (731)
+.+++..+..... ..+.... ..+|+.|++++|......+..+..+++ |+.|++++|
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHH--HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred CEEECCCCcCCeeCHHHccccc--CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence 7777765432110 1110000 035566666655543333333333322 555555555
Q ss_pred ------------------------------------------------CccceeecCccccccccccccCCccEEEEecc
Q 038165 553 ------------------------------------------------NLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSC 584 (731)
Q Consensus 553 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c 584 (731)
.+..+++..+ ..+++|+.|+|++|
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--------ETLKDLKVLNLAYN 300 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--------SSCCCCCEEEEESC
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh--------hcCCCCCEEECCCC
Confidence 3333222221 22556666666666
Q ss_pred CC--CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCC-CcCCCCccE
Q 038165 585 RG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPN-PLPFPKLKK 661 (731)
Q Consensus 585 ~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~lp~L~~ 661 (731)
.. ..+..+..+++|++|+|++|. +..+ .|..+..+++|+.|+++++ .+..++.. ...+++|++
T Consensus 301 ~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~------------~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 301 KINKIADEAFYGLDNLQVLNLSYNL-LGEL------------YSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp CCCEECTTTTTTCSSCCEEEEESCC-CSCC------------CSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCE
T ss_pred cCCCCChHHhcCCCCCCEEECCCCC-CCcc------------CHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCE
Confidence 55 233445566666666666552 2211 1446667777777777775 45555442 445777777
Q ss_pred EeeccccCCCCCCCCCCCCCCcceEEecc
Q 038165 662 IEVRECRQLKKLPLNSSSAKERRVVIEGS 690 (731)
Q Consensus 662 L~l~~C~~L~~lP~~~~~~~L~~l~i~~~ 690 (731)
|++++| .++.+|. ..+++.+.+.++
T Consensus 367 L~Ls~N-~l~~i~~---~~~L~~L~l~~N 391 (844)
T 3j0a_A 367 LDLRDN-ALTTIHF---IPSIPDIFLSGN 391 (844)
T ss_dssp EEEETC-CSCCCSS---CCSCSEEEEESC
T ss_pred EECCCC-CCCcccC---CCCcchhccCCC
Confidence 777775 3555554 112666666654
No 43
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.86 E-value=7.2e-24 Score=261.60 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=147.9
Q ss_pred chHHHHHHHHHHHHHhh-CCCcceEeee-cCCcccccccccccccccccccHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038165 115 FGRKVVMLTDRVINLRK-DGEKIEVVVE-KAPDGAAIELPLAQTIVGQELLVDRLAETLARECGGLPLALKTVGRAMKSQ 192 (731)
Q Consensus 115 ~gsrv~~~~~~~~~l~~-~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~iv~~c~GlPLal~~~g~~L~~~ 192 (731)
+|++|++|||+...... .+....+... ++..+++.++|...+ +.....+.+++++|+++|+|+||||+++|+.|+.+
T Consensus 256 ~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~-~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~ 334 (1249)
T 3sfz_A 256 NQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV-NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDF 334 (1249)
T ss_dssp SSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHH-TSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHS
T ss_pred CCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhh-CCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcC
Confidence 34555555555554422 2222334444 388889999998776 55445577899999999999999999999999884
Q ss_pred CChhHHHHHHHHhhcccCCC-----CCChHHHHhhhhhhccCCChhhHHHHHhHhcccCCCcccChhhHHHHHHHcCccc
Q 038165 193 RKVGDWKRAIHKMTTSASKF-----SGMKEEVFSRLKFSYDSLSTDELRSCLLYCCLYPEDYEIPRRELIDYWISEGFVY 267 (731)
Q Consensus 193 ~~~~~W~~~l~~l~~~~~~~-----~~~~~~i~~~L~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~w~a~g~~~ 267 (731)
. ..|+.+++.+....+.. ....+.+..+|.+||+.|++ ++|.||+|||+||+++.|+++.++.+|.+++
T Consensus 335 ~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--- 408 (1249)
T 3sfz_A 335 P--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET--- 408 (1249)
T ss_dssp S--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH---
T ss_pred h--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH---
Confidence 3 57999999998765432 11224799999999999999 8999999999999999999999999998775
Q ss_pred cchhhhhHHHHHHHhhcccccCCC---ccchhhHHHHHHHHHhhcc
Q 038165 268 DFDDGCDFIDDLLQACLLEEEGDD---HVKMHDMIREMSLWIACTV 310 (731)
Q Consensus 268 ~~~~g~~~~~~L~~~sli~~~~~~---~~~mhdli~dl~~~i~~~~ 310 (731)
+.++.++++|+++||++....+ .|+|||++|++++..+.++
T Consensus 409 --~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 --EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp --HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred --HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 7888999999999999987433 4999999999999987653
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.2e-20 Score=197.21 Aligned_cols=284 Identities=15% Similarity=0.131 Sum_probs=183.8
Q ss_pred CCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCEEeccCCCCCCc-chHHhcCCcCcEee
Q 038165 357 PRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHHLDLSSADITGL-PQELKALEKLRYLN 434 (731)
Q Consensus 357 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~ 434 (731)
.+++.++++++.+..+|..+ .++|++|++++| .+..+| ..|+.+++|++|++++|.++.+ |..++++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 37899999999999998764 478999999999 777774 5799999999999999999997 77899999999999
Q ss_pred cccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCc
Q 038165 435 LEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYP 514 (731)
Q Consensus 435 L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~ 514 (731)
+++| .++.+|.. +. ++|++|++++|.+...+ ...+..+++|+.+++..+............
T Consensus 109 L~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 109 ISKN-HLVEIPPN-LP--SSLVELRIHDNRIRKVP---------------KGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp CCSS-CCCSCCSS-CC--TTCCEEECCSSCCCCCC---------------SGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred CCCC-cCCccCcc-cc--ccCCEEECCCCccCccC---------------HhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 9999 77889986 33 89999999999887431 122455666666666544332111111111
Q ss_pred hhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-CC-Cchh
Q 038165 515 KLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KD-LTWL 592 (731)
Q Consensus 515 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~-~~~l 592 (731)
... .|+.|++++|...... ..+ .++|++|++++|.+..+++..+. .+++|+.|++++|.. .. +.++
T Consensus 170 ~~l-~L~~L~l~~n~l~~l~-~~~--~~~L~~L~l~~n~i~~~~~~~l~--------~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTGIP-KDL--PETLNELHLDHNKIQAIELEDLL--------RYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp CSC-CCSCCBCCSSBCSSCC-SSS--CSSCSCCBCCSSCCCCCCTTSST--------TCTTCSCCBCCSSCCCCCCTTGG
T ss_pred cCC-ccCEEECcCCCCCccC-ccc--cCCCCEEECCCCcCCccCHHHhc--------CCCCCCEEECCCCcCCcCChhHh
Confidence 111 5666666666533321 112 25677777777766665433332 266777777777766 32 2356
Q ss_pred hccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCCc-------CCCCccEEeec
Q 038165 593 VFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNPL-------PFPKLKKIEVR 665 (731)
Q Consensus 593 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-------~lp~L~~L~l~ 665 (731)
..+++|+.|+|++| .+..+ |..+..+++|++|+++++ .+..++.... .+++|+.|++.
T Consensus 238 ~~l~~L~~L~L~~N-~l~~l-------------p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 238 SFLPTLRELHLDNN-KLSRV-------------PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBC-------------CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred hCCCCCCEEECCCC-cCeec-------------ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEee
Confidence 67777777777766 33333 445667777777777764 4555543211 14667777777
Q ss_pred cccCC--CCCCCCCCCCC-CcceEEecc
Q 038165 666 ECRQL--KKLPLNSSSAK-ERRVVIEGS 690 (731)
Q Consensus 666 ~C~~L--~~lP~~~~~~~-L~~l~i~~~ 690 (731)
++|-. ...|......+ ++.+.+.++
T Consensus 303 ~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 303 NNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCcccccccCcccccccchhhhhhcccc
Confidence 76643 22333333333 666665554
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=5.3e-20 Score=192.07 Aligned_cols=244 Identities=17% Similarity=0.187 Sum_probs=176.4
Q ss_pred CCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEEeccCCCCCCc-chHHhcCCcCcEee
Q 038165 357 PRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHLDLSSADITGL-PQELKALEKLRYLN 434 (731)
Q Consensus 357 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~ 434 (731)
.+++.++++++.+..+|..+ .++|++|++++| .+..+|. .|+.+++|++|++++|.++.+ |..+.++++|++|+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 47899999999998888753 478999999999 7877765 789999999999999999997 78899999999999
Q ss_pred cccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCc
Q 038165 435 LEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYP 514 (731)
Q Consensus 435 L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~ 514 (731)
+++| .++.+|.. +. ++|++|++++|.+.+. ....+..+++|+.+++
T Consensus 107 Ls~n-~l~~l~~~-~~--~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l--------------- 152 (330)
T 1xku_A 107 LSKN-QLKELPEK-MP--KTLQELRVHENEITKV---------------RKSVFNGLNQMIVVEL--------------- 152 (330)
T ss_dssp CCSS-CCSBCCSS-CC--TTCCEEECCSSCCCBB---------------CHHHHTTCTTCCEEEC---------------
T ss_pred CCCC-cCCccChh-hc--ccccEEECCCCccccc---------------CHhHhcCCccccEEEC---------------
Confidence 9999 67889876 32 7999999999987632 2223444554544444
Q ss_pred hhhccceEEEEeecCCCC--cccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC--CCCc
Q 038165 515 KLVSITQSVWVYQCESAP--FNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLT 590 (731)
Q Consensus 515 ~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~ 590 (731)
++|.... ..+..+..+++|++|++++|.+..++... +++|+.|++++|.. ..+.
T Consensus 153 -----------~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-----------~~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 153 -----------GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-----------PPSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp -----------CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-----------CTTCSEEECTTSCCCEECTG
T ss_pred -----------CCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-----------cccCCEEECCCCcCCccCHH
Confidence 4333211 22334667777888888877776644322 36777888877777 3355
Q ss_pred hhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCCcCCCCccEEeeccccCC
Q 038165 591 WLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECRQL 670 (731)
Q Consensus 591 ~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~L 670 (731)
.+..+++|+.|+|++|. +..+. +..+..+++|++|+++++ .+..+|.....+++|++|++++|+ +
T Consensus 211 ~~~~l~~L~~L~Ls~n~-l~~~~------------~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i 275 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNS-ISAVD------------NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-I 275 (330)
T ss_dssp GGTTCTTCCEEECCSSC-CCEEC------------TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-C
T ss_pred HhcCCCCCCEEECCCCc-CceeC------------hhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-C
Confidence 67777788888887763 33221 235667778888888775 566777666677788888887753 6
Q ss_pred CCCCC
Q 038165 671 KKLPL 675 (731)
Q Consensus 671 ~~lP~ 675 (731)
+.+|.
T Consensus 276 ~~~~~ 280 (330)
T 1xku_A 276 SAIGS 280 (330)
T ss_dssp CCCCT
T ss_pred CccCh
Confidence 66654
No 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.84 E-value=2e-23 Score=234.96 Aligned_cols=138 Identities=14% Similarity=0.236 Sum_probs=115.4
Q ss_pred cCCcccccccccccccccccccHHHHHHHHHHHcCCchHHHHHHHHHhcCC-CChhHHHHHHHHhhcccCCCCCChHHHH
Q 038165 142 KAPDGAAIELPLAQTIVGQELLVDRLAETLARECGGLPLALKTVGRAMKSQ-RKVGDWKRAIHKMTTSASKFSGMKEEVF 220 (731)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~iv~~c~GlPLal~~~g~~L~~~-~~~~~W~~~l~~l~~~~~~~~~~~~~i~ 220 (731)
.+..+++.++|+.. ++.. ..++..+| |+|+||||+++|+.|+++ .+.++|+.. . ...|.
T Consensus 297 ~LS~eEA~eLF~~~--~g~~--~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~------~~~I~ 356 (1221)
T 1vt4_I 297 TLTPDEVKSLLLKY--LDCR--PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------N------CDKLT 356 (1221)
T ss_dssp CCCHHHHHHHHHHH--HCCC--TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------S------CHHHH
T ss_pred CcCHHHHHHHHHHH--cCCC--HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------C------hhHHH
Confidence 67788899998776 3322 34455555 999999999999999986 377889763 1 23899
Q ss_pred hhhhhhccCCChhhH-HHHHhHhcccCCCcccChhhHHHHHHHcCccccchhhhhHHHHHHHhhccccc-CCCccchhhH
Q 038165 221 SRLKFSYDSLSTDEL-RSCLLYCCLYPEDYEIPRRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEE-GDDHVKMHDM 298 (731)
Q Consensus 221 ~~L~~sy~~L~~~~~-k~cfl~~a~fp~~~~~~~~~li~~w~a~g~~~~~~~g~~~~~~L~~~sli~~~-~~~~~~mhdl 298 (731)
.+|++||+.||+ +. |.||+|||+||+++.|+++.++.+|+++| . +.++.++++|+++||++.. ....|+|||+
T Consensus 357 aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---e-edAe~~L~eLvdRSLLq~d~~~~rYrMHDL 431 (1221)
T 1vt4_I 357 TIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---K-SDVMVVVNKLHKYSLVEKQPKESTISIPSI 431 (1221)
T ss_dssp HHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---S-HHHHHHHHHHHTSSSSSBCSSSSEEBCCCH
T ss_pred HHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---H-HHHHHHHHHHHhhCCEEEeCCCCEEEehHH
Confidence 999999999999 78 99999999999999999999999999987 2 5688999999999999986 4578999999
Q ss_pred HHHHHH
Q 038165 299 IREMSL 304 (731)
Q Consensus 299 i~dl~~ 304 (731)
+++++.
T Consensus 432 llELr~ 437 (1221)
T 1vt4_I 432 YLELKV 437 (1221)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999653
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=3.6e-20 Score=195.27 Aligned_cols=269 Identities=20% Similarity=0.180 Sum_probs=194.4
Q ss_pred EEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccCCCC
Q 038165 339 RVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSSADI 417 (731)
Q Consensus 339 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~~~l 417 (731)
..+..++.+..+|.. -.++|++|++++|.+..++...+..+++|++|++++| .+..+ |..|+.+++|++|++++|.+
T Consensus 35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 35 ICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcC
Confidence 366777788877652 2368999999999999998877899999999999999 77766 45689999999999999999
Q ss_pred CCcchH-HhcCCcCcEeecccccccccccc-cccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCc
Q 038165 418 TGLPQE-LKALEKLRYLNLEYAFNLSIIPH-QLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLN 495 (731)
Q Consensus 418 ~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~ 495 (731)
+.+|.. ++++++|++|++++| .++.+|. ..++++++|++|++++|..... .....+..+
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~--------------~~~~~~~~l---- 173 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTK--------------IQRKDFAGL---- 173 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE--------------ECTTTTTTC----
T ss_pred CcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccc--------------cCHHHccCC----
Confidence 999877 788999999999999 6778887 5588999999999998843210 001112222
Q ss_pred EEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCC
Q 038165 496 VLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRS 575 (731)
Q Consensus 496 ~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 575 (731)
+.|+.|++++|......+..+..+++|++|++++|.+..++.... ..+++
T Consensus 174 ----------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------~~~~~ 223 (353)
T 2z80_A 174 ----------------------TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV--------DVTSS 223 (353)
T ss_dssp ----------------------CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHH--------HHTTT
T ss_pred ----------------------CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhh--------hhccc
Confidence 256666666666555555667888888899998888766543322 22688
Q ss_pred ccEEEEeccCC-C-CCc---hhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccC
Q 038165 576 LNTVVLRSCRG-K-DLT---WLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVY 650 (731)
Q Consensus 576 L~~L~L~~c~~-~-~~~---~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 650 (731)
|+.|++++|.. . .+. .....+.++.++++++.- ... .+..+ |..+..+++|++|+++++ .+..++
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l-~~~-------~l~~l-~~~l~~l~~L~~L~Ls~N-~l~~i~ 293 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI-TDE-------SLFQV-MKLLNQISGLLELEFSRN-QLKSVP 293 (353)
T ss_dssp EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC-CHH-------HHHHH-HHHHHTCTTCCEEECCSS-CCCCCC
T ss_pred ccEEECCCCccccccccccccccccchhhccccccccc-cCc-------chhhh-HHHHhcccCCCEEECCCC-CCCccC
Confidence 88999988887 2 222 223566788888877632 111 01111 445678889999999885 677888
Q ss_pred CCC-cCCCCccEEeecccc
Q 038165 651 PNP-LPFPKLKKIEVRECR 668 (731)
Q Consensus 651 ~~~-~~lp~L~~L~l~~C~ 668 (731)
... ..+++|++|++++++
T Consensus 294 ~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 294 DGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHHhcCCCCCEEEeeCCC
Confidence 764 678899999998875
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.4e-20 Score=192.43 Aligned_cols=125 Identities=23% Similarity=0.295 Sum_probs=89.0
Q ss_pred EEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc---cccccCCcCCCEEeccCC
Q 038165 339 RVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL---PSGISSLVSLHHLDLSSA 415 (731)
Q Consensus 339 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l---P~~i~~l~~L~~L~L~~~ 415 (731)
.+...++.+..+|.. -.++|+.|++++|.+..++..+|..+++|++|++++| .+..+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC
Confidence 466666666666542 2367788888888877777776777888888888877 55544 556667778888888888
Q ss_pred CCCCcchHHhcCCcCcEeecccccccccccc-cccCCCCCCcEEEeeCcccC
Q 038165 416 DITGLPQELKALEKLRYLNLEYAFNLSIIPH-QLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 416 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 466 (731)
.+..+|..+..+++|++|++++| .++.++. ..+..+++|++|++++|.+.
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCC
Confidence 77777777777888888888877 5555554 33677777888887777544
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=5.9e-21 Score=201.26 Aligned_cols=265 Identities=20% Similarity=0.213 Sum_probs=195.8
Q ss_pred EEEcCCccccCccccccccceEEEeecCCcccCCC--CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC
Q 038165 318 LVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSE--IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS 395 (731)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 395 (731)
+...+..+..+|.. -.++++.+++.+|.+..++. +..+++|++|++++|.+..+++..|..+++|++|++++| .+.
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLS 113 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCC
Confidence 33344556666652 23589999999999998865 799999999999999999998877999999999999999 888
Q ss_pred ccccc-ccCCcCCCEEeccCCCCCCcch--HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhh
Q 038165 396 TLPSG-ISSLVSLHHLDLSSADITGLPQ--ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEE 472 (731)
Q Consensus 396 ~lP~~-i~~l~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 472 (731)
.+|.. ++.+++|++|++++|.++.+|. .+.++++|++|++++|..++.++...++++++|++|++++|.+.+.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---- 189 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY---- 189 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE----
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc----
Confidence 88876 8999999999999999999987 6889999999999999778888766699999999999999977632
Q ss_pred hhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCC
Q 038165 473 EANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYC 552 (731)
Q Consensus 473 ~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 552 (731)
....+..++ +|+.|++++|.........+..+++|+.|++++|
T Consensus 190 -----------~~~~l~~l~--------------------------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 190 -----------EPKSLKSIQ--------------------------NVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp -----------CTTTTTTCS--------------------------EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred -----------CHHHHhccc--------------------------cCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 122233333 4445555555432222223455678888888888
Q ss_pred CccceeecCccccccccccccCCccEEEEeccCC------CCCchhhccCCccEEeeecccccccccccccccccccccC
Q 038165 553 NLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG------KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIG 626 (731)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~------~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~ 626 (731)
.+..++...... ....+.++.+++.++.. ..+.++..+++|+.|+|++| .++.+ |
T Consensus 233 ~l~~~~~~~l~~-----~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i-------------~ 293 (353)
T 2z80_A 233 DLDTFHFSELST-----GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSV-------------P 293 (353)
T ss_dssp BCTTCCCC-----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCC-------------C
T ss_pred cccccccccccc-----ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCcc-------------C
Confidence 776643332211 12356677778877766 23456778888999999887 34444 3
Q ss_pred CC-CccCcCccEeeccccc
Q 038165 627 SE-RNFFAQLESLSVWRGI 644 (731)
Q Consensus 627 ~~-~~~~~~L~~L~L~~~~ 644 (731)
.. +..+++|++|++++++
T Consensus 294 ~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 294 DGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHHhcCCCCCEEEeeCCC
Confidence 33 4788889999888864
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.1e-20 Score=193.12 Aligned_cols=255 Identities=17% Similarity=0.131 Sum_probs=199.0
Q ss_pred CCeeEEEcccCCccc---cChhhhcCCCCccEEEcCC-CCCCCcccccccCCcCCCEEeccCCCCC-CcchHHhcCCcCc
Q 038165 357 PRLVTLLVDENPIVE---ITDGFFQSMSSLRVLSLSE-NFHLSTLPSGISSLVSLHHLDLSSADIT-GLPQELKALEKLR 431 (731)
Q Consensus 357 ~~L~~L~l~~~~l~~---~~~~~~~~l~~L~~L~L~~-~~~~~~lP~~i~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~ 431 (731)
.+++.|+++++.+.. +|.. +..+++|++|++++ +.....+|..|+++++|++|++++|.+. .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 689999999999875 5554 89999999999995 6455689999999999999999999998 6899999999999
Q ss_pred EeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhh
Q 038165 432 YLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFL 511 (731)
Q Consensus 432 ~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~ 511 (731)
+|++++|.....+|.. ++.+++|++|++++|.+.+. .+.. +..+.
T Consensus 129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~------------~p~~---l~~l~------------------- 173 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA------------IPDS---YGSFS------------------- 173 (313)
T ss_dssp EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE------------CCGG---GGCCC-------------------
T ss_pred EEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCc------------CCHH---Hhhhh-------------------
Confidence 9999999544477876 89999999999999987621 1222 22232
Q ss_pred CCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-CCCc
Q 038165 512 KYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLT 590 (731)
Q Consensus 512 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~ 590 (731)
..|+.|++++|......+..+..++ |+.|++++|.+....+..+. .+++|+.|++++|.. ..++
T Consensus 174 ------~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~--------~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 174 ------KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG--------SDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp ------TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC--------TTSCCSEEECCSSEECCBGG
T ss_pred ------hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh--------cCCCCCEEECCCCceeeecC
Confidence 1345555555543334455566766 99999999988764443332 389999999999988 6677
Q ss_pred hhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCCcCCCCccEEeeccccCC
Q 038165 591 WLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRECRQL 670 (731)
Q Consensus 591 ~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~C~~L 670 (731)
.+..+++|++|+|++|.-...+ |..+..+++|++|+++++.--..+|.. ..+++|+.|++.+++.+
T Consensus 239 ~~~~l~~L~~L~Ls~N~l~~~~-------------p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 239 KVGLSKNLNGLDLRNNRIYGTL-------------PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GCCCCTTCCEEECCSSCCEECC-------------CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred cccccCCCCEEECcCCcccCcC-------------ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 7889999999999988543233 567889999999999997544466655 78899999999999988
Q ss_pred CCCCCC
Q 038165 671 KKLPLN 676 (731)
Q Consensus 671 ~~lP~~ 676 (731)
...|..
T Consensus 305 c~~p~~ 310 (313)
T 1ogq_A 305 CGSPLP 310 (313)
T ss_dssp ESTTSS
T ss_pred cCCCCC
Confidence 776643
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=2.1e-19 Score=196.05 Aligned_cols=233 Identities=21% Similarity=0.234 Sum_probs=158.9
Q ss_pred CCccccCccccccccceEEEeecCCcccC--CCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc
Q 038165 322 GVKLTEAPKIEEWEGAKRVSLMGNGIESL--SEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS 399 (731)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~ 399 (731)
+..+..+|.. -.++++.+++.+|.+..+ ..+..+++|+.|++++|.+..+++..|..+++|++|+|++| .+..+|.
T Consensus 63 ~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 140 (452)
T 3zyi_A 63 RRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPS 140 (452)
T ss_dssp SSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCT
T ss_pred CCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccCh
Confidence 3344444432 124777888888877765 34677788888888888877777666777888888888887 6666665
Q ss_pred c-ccCCcCCCEEeccCCCCCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhh
Q 038165 400 G-ISSLVSLHHLDLSSADITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVL 477 (731)
Q Consensus 400 ~-i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 477 (731)
. +..+++|++|+|++|.++.+|. .+.++++|++|++++|..++.+|...+.++++|++|++++|.+.+.
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--------- 211 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--------- 211 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---------
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---------
Confidence 4 6777888888888887777765 4677788888888877777777776677788888888887765532
Q ss_pred cCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccce
Q 038165 478 CADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEM 557 (731)
Q Consensus 478 ~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 557 (731)
+ .+..+ .+|+.|++++|......+..+..+++|+.|++++|.+..+
T Consensus 212 ----~----~~~~l--------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 212 ----P----NLTPL--------------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp ----C----CCTTC--------------------------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred ----c----ccccc--------------------------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE
Confidence 1 11111 2555666666655555555677777888888888777765
Q ss_pred eecCccccccccccccCCccEEEEeccCC-CC-CchhhccCCccEEeeeccc
Q 038165 558 KIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KD-LTWLVFVQNLKVLYIGFCG 607 (731)
Q Consensus 558 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~-~~~l~~l~~L~~L~L~~~~ 607 (731)
++..+. .+++|+.|+|++|.. .. ...+..+++|+.|+|++++
T Consensus 258 ~~~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 258 ERNAFD--------GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTTTT--------TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CHHHhc--------CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 544433 267788888887777 32 2345677778888877653
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=194.95 Aligned_cols=234 Identities=21% Similarity=0.242 Sum_probs=165.5
Q ss_pred cCCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc
Q 038165 321 AGVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP 398 (731)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP 398 (731)
.+..+..+|..- ...++.+++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|+|++| .+..+|
T Consensus 51 ~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 128 (440)
T 3zyj_A 51 VRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIP 128 (440)
T ss_dssp CSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCC
T ss_pred CCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeC
Confidence 344445555422 257788888888887763 4677888888888888888877777888888888888888 677776
Q ss_pred c-cccCCcCCCEEeccCCCCCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhh
Q 038165 399 S-GISSLVSLHHLDLSSADITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANV 476 (731)
Q Consensus 399 ~-~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 476 (731)
. .|..+++|++|+|++|.++.+|. .+.++++|++|++++|..+..+|...+.++++|++|++++|.+..+
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-------- 200 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-------- 200 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--------
T ss_pred HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--------
Confidence 5 47788888888888888887765 4677888888888887777778776678888888888888766532
Q ss_pred hcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccc
Q 038165 477 LCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEE 556 (731)
Q Consensus 477 ~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 556 (731)
+ .+..+ .+|+.|++++|......+..+..+++|+.|++++|.+..
T Consensus 201 -----~----~~~~l--------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 201 -----P----NLTPL--------------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp -----C----CCTTC--------------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred -----c----ccCCC--------------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 1 11122 255666666665555555567778888888888887777
Q ss_pred eeecCccccccccccccCCccEEEEeccCC-C-CCchhhccCCccEEeeeccc
Q 038165 557 MKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-K-DLTWLVFVQNLKVLYIGFCG 607 (731)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~-~~~~l~~l~~L~~L~L~~~~ 607 (731)
++...+. .+++|+.|+|++|.. . ....+..+++|+.|+|++++
T Consensus 246 ~~~~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 IERNAFD--------NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTSST--------TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EChhhhc--------CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 6555443 267888888888877 3 33345677888888887654
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=5.7e-19 Score=197.62 Aligned_cols=255 Identities=20% Similarity=0.192 Sum_probs=159.5
Q ss_pred cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCC
Q 038165 336 GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSA 415 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~ 415 (731)
+++.+++.++.+..+|.... ++|++|++++|.++.+|. .+++|++|+|++| .++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence 57778888888887765332 788888888888877776 4678888888888 7777876 5678888888888
Q ss_pred CCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCc
Q 038165 416 DITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLN 495 (731)
Q Consensus 416 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~ 495 (731)
+++.+|. .+++|+.|++++| .++.+|.. +++|++|++++|.+.++ +. .+.+|+
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l-------------~~------~~~~L~ 164 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASL-------------PA------LPSELC 164 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCC-------------CC------CCTTCC
T ss_pred cCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCc-------------CC------ccCCCC
Confidence 8888876 5678888888888 67777763 47888888888876632 11 112333
Q ss_pred EEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCC
Q 038165 496 VLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRS 575 (731)
Q Consensus 496 ~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 575 (731)
.+.+..+.... .+...++|+.|++++|....... .+++|+.|++++|.+..++. .+++
T Consensus 165 ~L~L~~N~l~~------l~~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~------------~~~~ 222 (622)
T 3g06_A 165 KLWAYNNQLTS------LPMLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA------------LPSG 222 (622)
T ss_dssp EEECCSSCCSC------CCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC------------CCTT
T ss_pred EEECCCCCCCC------CcccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC------------CCCC
Confidence 33333222111 11222456666666655332211 23566666666666655321 1356
Q ss_pred ccEEEEeccCCCCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCCcC
Q 038165 576 LNTVVLRSCRGKDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLP 655 (731)
Q Consensus 576 L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~ 655 (731)
|+.|++++|....++ ..+++|+.|+|++| .++.+ |. .+++|+.|+|++| ++..+|.....
T Consensus 223 L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N-~L~~l-------------p~---~~~~L~~L~Ls~N-~L~~lp~~l~~ 282 (622)
T 3g06_A 223 LKELIVSGNRLTSLP--VLPSELKELMVSGN-RLTSL-------------PM---LPSGLLSLSVYRN-QLTRLPESLIH 282 (622)
T ss_dssp CCEEECCSSCCSCCC--CCCTTCCEEECCSS-CCSCC-------------CC---CCTTCCEEECCSS-CCCSCCGGGGG
T ss_pred CCEEEccCCccCcCC--CCCCcCcEEECCCC-CCCcC-------------Cc---ccccCcEEeCCCC-CCCcCCHHHhh
Confidence 667777666662222 44566677777665 33333 22 4566677777664 55566655566
Q ss_pred CCCccEEeecccc
Q 038165 656 FPKLKKIEVRECR 668 (731)
Q Consensus 656 lp~L~~L~l~~C~ 668 (731)
+++|+.|++++++
T Consensus 283 l~~L~~L~L~~N~ 295 (622)
T 3g06_A 283 LSSETTVNLEGNP 295 (622)
T ss_dssp SCTTCEEECCSCC
T ss_pred ccccCEEEecCCC
Confidence 6667777776665
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=2.6e-19 Score=184.65 Aligned_cols=144 Identities=25% Similarity=0.318 Sum_probs=119.5
Q ss_pred EcCCccccCccccccccceEEEeecCCcccCCC--CCCCCCeeEEEcccCCccccC--hhhhcCCCCccEEEcCCCCCCC
Q 038165 320 RAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSE--IPTCPRLVTLLVDENPIVEIT--DGFFQSMSSLRVLSLSENFHLS 395 (731)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~~ 395 (731)
..+..+..+|.. -.++++.+++.+|.+..++. +..+++|++|++++|.+..+. +..+..+++|++|++++| .+.
T Consensus 14 c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~ 91 (306)
T 2z66_A 14 CNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVI 91 (306)
T ss_dssp CCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEE
T ss_pred cCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccc
Confidence 344455555542 23689999999999998876 689999999999999987552 233667999999999999 888
Q ss_pred cccccccCCcCCCEEeccCCCCCCcch--HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 396 TLPSGISSLVSLHHLDLSSADITGLPQ--ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 396 ~lP~~i~~l~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
.+|..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+..++...+.++++|++|++++|.+.
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccc
Confidence 999999999999999999999999875 7899999999999999 455555555889999999999998654
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.1e-18 Score=199.46 Aligned_cols=145 Identities=26% Similarity=0.307 Sum_probs=123.2
Q ss_pred CCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc
Q 038165 322 GVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS 399 (731)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~ 399 (731)
+.++..+|..- -..++.|++++|.++.++ .|..+++|++|++++|.++.++++.|.++++|++|+|++| .++.+|.
T Consensus 40 ~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~ 117 (635)
T 4g8a_A 40 ELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL 117 (635)
T ss_dssp TSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECG
T ss_pred CCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCH
Confidence 33455555321 147999999999999986 4799999999999999999999988999999999999999 8888875
Q ss_pred -cccCCcCCCEEeccCCCCCCcchH-HhcCCcCcEeeccccccccc--ccccccCCCCCCcEEEeeCcccCCCch
Q 038165 400 -GISSLVSLHHLDLSSADITGLPQE-LKALEKLRYLNLEYAFNLSI--IPHQLISGFSNLEVLRLRGCGCCSVTE 470 (731)
Q Consensus 400 -~i~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~ 470 (731)
.|.++.+|++|++++|+++.+|.. ++++++|++|++++| .+.. +|.. ++.+++|++|++++|.+.+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCcccccccc
Confidence 589999999999999999998864 899999999999999 4554 3554 7899999999999998876543
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=5.4e-19 Score=192.81 Aligned_cols=243 Identities=19% Similarity=0.190 Sum_probs=180.4
Q ss_pred cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCEEeccC
Q 038165 336 GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHHLDLSS 414 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~L~L~~ 414 (731)
..+.+...+..+..+|.. -.++++.|++++|.+..+++..|..+++|++|+|++| .+..++ ..|..+++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence 345677777888777653 2378999999999999998888999999999999999 676664 6789999999999999
Q ss_pred CCCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCC
Q 038165 415 ADITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKR 493 (731)
Q Consensus 415 ~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~ 493 (731)
|.++.+|.. +..+++|++|++++| .++.+|...+.++++|++|++++|...+. ++ ...+..+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~--~~~~~~l~- 196 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEY------------IS--EGAFEGLF- 196 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE------------EC--TTTTTTCT-
T ss_pred CcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccc------------cC--hhhccCCC-
Confidence 999998876 788999999999999 67888887799999999999998754421 00 11122222
Q ss_pred CcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCcccccccccccc
Q 038165 494 LNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGF 573 (731)
Q Consensus 494 L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 573 (731)
+|+.|++++|..... ..+..+++|+.|++++|.+..+++..+. .+
T Consensus 197 -------------------------~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~l 241 (452)
T 3zyi_A 197 -------------------------NLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFH--------GL 241 (452)
T ss_dssp -------------------------TCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGT--------TC
T ss_pred -------------------------CCCEEECCCCccccc--ccccccccccEEECcCCcCcccCccccc--------Cc
Confidence 455555555543322 2466778888888888888776554433 37
Q ss_pred CCccEEEEeccCC--CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccc
Q 038165 574 RSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGI 644 (731)
Q Consensus 574 ~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 644 (731)
++|+.|++++|.. ..+..+..+++|+.|+|++| .+..++ +..+..+++|+.|+|.+++
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~------------~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLP------------HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC------------TTSSTTCTTCCEEECCSSC
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccC------------hHHhccccCCCEEEccCCC
Confidence 7888888888877 44556778888888888877 344432 2456677888888887754
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=8.5e-19 Score=190.36 Aligned_cols=118 Identities=25% Similarity=0.342 Sum_probs=66.5
Q ss_pred ccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccC
Q 038165 335 EGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSS 414 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~ 414 (731)
.+++.+++++|.+..++... ++|++|++++|.+..+|. +..+++|++|++++| .+..+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcc--cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence 45666666666555544332 466666666666555552 556666666666666 555555432 3566666666
Q ss_pred CCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 415 ADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 415 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
|.++.+| .++++++|++|++++| .++.+|.. .++|++|++++|.+.
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILE 228 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCS
T ss_pred CcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCC
Confidence 6666655 4566666666666665 44445442 135666666665444
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=7e-19 Score=191.17 Aligned_cols=243 Identities=19% Similarity=0.219 Sum_probs=182.2
Q ss_pred cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCEEeccC
Q 038165 336 GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHHLDLSS 414 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~L~L~~ 414 (731)
..+.++..+..+..+|... .++++.|++++|.+..++...|..+++|++|+|++| .+..++ ..|.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence 3457778888888877532 378999999999999998888999999999999999 777665 6789999999999999
Q ss_pred CCCCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCC
Q 038165 415 ADITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKR 493 (731)
Q Consensus 415 ~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~ 493 (731)
|+++.+|. .+..+++|++|++++| .++.+|...+.++++|++|++++|...+. .....+..++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~--------------i~~~~~~~l~- 185 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSY--------------ISEGAFEGLS- 185 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE--------------ECTTTTTTCS-
T ss_pred CcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcce--------------eCcchhhccc-
Confidence 99999887 4889999999999999 67888887799999999999998654421 0011122222
Q ss_pred CcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCcccccccccccc
Q 038165 494 LNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGF 573 (731)
Q Consensus 494 L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 573 (731)
+|+.|++++|..... ..+..+++|+.|++++|.+..+++..+. .+
T Consensus 186 -------------------------~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~l 230 (440)
T 3zyj_A 186 -------------------------NLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQ--------GL 230 (440)
T ss_dssp -------------------------SCCEEECTTSCCSSC--CCCTTCSSCCEEECTTSCCCEECTTTTT--------TC
T ss_pred -------------------------ccCeecCCCCcCccc--cccCCCcccCEEECCCCccCccChhhhc--------cC
Confidence 455555555543222 2467778888888888888776555443 37
Q ss_pred CCccEEEEeccCC--CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccc
Q 038165 574 RSLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGI 644 (731)
Q Consensus 574 ~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 644 (731)
++|+.|+|++|.. ..+..+..+++|+.|+|++| .++.++ +..+..+++|+.|+|.+++
T Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~------------~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLP------------HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCC------------TTTTSSCTTCCEEECCSSC
T ss_pred ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccC------------hhHhccccCCCEEEcCCCC
Confidence 8888888888887 44556778888888888877 344432 3456778888888887754
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=4.1e-19 Score=202.98 Aligned_cols=348 Identities=16% Similarity=0.115 Sum_probs=219.9
Q ss_pred eEEEEcCCccccCc--cccccccceEEEeecCCcccCCC--CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCC
Q 038165 316 NFLVRAGVKLTEAP--KIEEWEGAKRVSLMGNGIESLSE--IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSEN 391 (731)
Q Consensus 316 ~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 391 (731)
..+......+..++ .+.++++++.|++++|.+..++. |.++++|++|++++|.++.+++..|.++++|++|+|++|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 34555555666664 36778999999999999998854 789999999999999999999998999999999999999
Q ss_pred CCCCcccc-cccCCcCCCEEeccCCCCCC--cchHHhcCCcCcEeecccccccccccccccCCCCC--------------
Q 038165 392 FHLSTLPS-GISSLVSLHHLDLSSADITG--LPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSN-------------- 454 (731)
Q Consensus 392 ~~~~~lP~-~i~~l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~-------------- 454 (731)
.+..+|. .|+++++|++|++++|.++. +|..++.+++|++|++++| .++.++...+..+.+
T Consensus 135 -~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 135 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp -CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred -cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhhhhhcccCc
Confidence 8888875 58999999999999999876 5788999999999999998 444443322221111
Q ss_pred -------------CcEEEeeCcc---------------------------------------------------------
Q 038165 455 -------------LEVLRLRGCG--------------------------------------------------------- 464 (731)
Q Consensus 455 -------------L~~L~l~~~~--------------------------------------------------------- 464 (731)
++.+++.++.
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 1122222210
Q ss_pred -----------------------------------------------cCCCchhhhhh----hhcCCcccchhhhccCCC
Q 038165 465 -----------------------------------------------CCSVTEEEEAN----VLCADAEPLMKELLGLKR 493 (731)
Q Consensus 465 -----------------------------------------------~~~~~~~~~~~----~~~~~~~~~i~~l~~L~~ 493 (731)
+.......... ...............++.
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 00000000000 000000000011124566
Q ss_pred CcEEEEEeechhHHHhhhCCchhhccceEEEEeecC-----------------------CCCc-ccccccccCCccEEec
Q 038165 494 LNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCE-----------------------SAPF-NVLHLAYMENLQELDL 549 (731)
Q Consensus 494 L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-----------------------~~~~-~~~~l~~l~~L~~L~l 549 (731)
|+.+.+..+.................++.+++..+. .... ....+..+++++.+++
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 666655432211000000000011234444443332 1111 1122455566666666
Q ss_pred cCCCccceeecCccccccccccccCCccEEEEeccCC---CCCchhhccCCccEEeeecccccccccccccccccccccC
Q 038165 550 EYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG---KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIG 626 (731)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~ 626 (731)
+.|.+........ ..+++|+.|++++|.. ..+..+..+++|+.|+|++| .++.++ |
T Consensus 453 s~n~l~~~~~~~~--------~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~------------~ 511 (635)
T 4g8a_A 453 SHTHTRVAFNGIF--------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLS------------P 511 (635)
T ss_dssp TTSCCEECCTTTT--------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC------------T
T ss_pred ccccccccccccc--------ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcC------------h
Confidence 6666655433332 2378899999988875 24556788999999999988 444442 5
Q ss_pred CCCccCcCccEeeccccccccccCCC-CcCCCCccEEeeccccCCCCC-CCCCCCC--CCcceEEe
Q 038165 627 SERNFFAQLESLSVWRGINLKSVYPN-PLPFPKLKKIEVRECRQLKKL-PLNSSSA--KERRVVIE 688 (731)
Q Consensus 627 ~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~lp~L~~L~l~~C~~L~~l-P~~~~~~--~L~~l~i~ 688 (731)
..+..+++|++|+|+++ ++..++.. ...+++|++|+++++. ++.+ |...... +|+.+++.
T Consensus 512 ~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECT
T ss_pred HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEee
Confidence 67889999999999985 67777653 5578999999999975 5555 4444443 38888886
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=2.4e-18 Score=186.82 Aligned_cols=136 Identities=21% Similarity=0.292 Sum_probs=102.3
Q ss_pred EEEEcCCccccCccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCc
Q 038165 317 FLVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLST 396 (731)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 396 (731)
.+...+..+..+|.. .++++.+++++|.+..++.. +++|++|++++|.+..++.. .++|++|++++| .+..
T Consensus 75 ~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~ 145 (454)
T 1jl5_A 75 ELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEK 145 (454)
T ss_dssp EEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSS
T ss_pred EEEecCCccccCCCC--cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCCC
Confidence 344444445555442 25788888888888877653 47888888888887776542 268888888888 7777
Q ss_pred ccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCC
Q 038165 397 LPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 397 lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
+| .++.+++|++|++++|+++.+|..+ .+|++|++++| .++.+|. ++++++|++|++++|.+.+.
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSC
T ss_pred Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcC
Confidence 88 5888888888888888888887643 58888888888 6677874 88888888888888877653
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=2.5e-20 Score=193.17 Aligned_cols=250 Identities=17% Similarity=0.104 Sum_probs=180.9
Q ss_pred CCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEe
Q 038165 354 PTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYL 433 (731)
Q Consensus 354 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 433 (731)
..+++|+.|++++|.+..+++..|..+++|++|++++| .+...++ +..+++|++|++++|.++.+|. .++|++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEE
Confidence 55678888888888888888777888888888888888 6666664 8888888888888888887763 4788888
Q ss_pred ecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCC
Q 038165 434 NLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKY 513 (731)
Q Consensus 434 ~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~ 513 (731)
++++| .++.++.. .+++|++|++++|.+.+.+ +..+ ..+
T Consensus 105 ~l~~n-~l~~~~~~---~~~~L~~L~l~~N~l~~~~------------~~~~---~~l---------------------- 143 (317)
T 3o53_A 105 HAANN-NISRVSCS---RGQGKKNIYLANNKITMLR------------DLDE---GCR---------------------- 143 (317)
T ss_dssp ECCSS-CCSEEEEC---CCSSCEEEECCSSCCCSGG------------GBCT---GGG----------------------
T ss_pred ECCCC-ccCCcCcc---ccCCCCEEECCCCCCCCcc------------chhh---hcc----------------------
Confidence 88888 56666653 4678888888888766321 1111 111
Q ss_pred chhhccceEEEEeecCCCCcccccc-cccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-CCCch
Q 038165 514 PKLVSITQSVWVYQCESAPFNVLHL-AYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTW 591 (731)
Q Consensus 514 ~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~ 591 (731)
+.|+.|++++|......+..+ ..+++|++|++++|.+..++... .+++|+.|++++|.. ..++.
T Consensus 144 ----~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------~l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 144 ----SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----------VFAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp ----SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC----------CCTTCCEEECCSSCCCEECGG
T ss_pred ----CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc----------ccccCCEEECCCCcCCcchhh
Confidence 356667777666444444444 46788999999999887763222 278899999999888 55666
Q ss_pred hhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccc-cccCCCCcCCCCccEEeeccccCC
Q 038165 592 LVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINL-KSVYPNPLPFPKLKKIEVRECRQL 670 (731)
Q Consensus 592 l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L-~~l~~~~~~lp~L~~L~l~~C~~L 670 (731)
+..+++|+.|+|++| .++.+ |..+..+++|+.|++++++-. ..++.....+++|+.|++.+|+.+
T Consensus 210 ~~~l~~L~~L~L~~N-~l~~l-------------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 210 FQSAAGVTWISLRNN-KLVLI-------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp GGGGTTCSEEECTTS-CCCEE-------------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcccCcccEEECcCC-cccch-------------hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 888899999999887 44444 556778889999999886543 244444556788888888888888
Q ss_pred CCCCCCCC
Q 038165 671 KKLPLNSS 678 (731)
Q Consensus 671 ~~lP~~~~ 678 (731)
+..+....
T Consensus 276 ~~~~~~~~ 283 (317)
T 3o53_A 276 TGQNEEEC 283 (317)
T ss_dssp HSSSSCCC
T ss_pred cCCchhcc
Confidence 77655443
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=1e-18 Score=178.17 Aligned_cols=218 Identities=17% Similarity=0.204 Sum_probs=150.3
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccCCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSSAD 416 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~~~ 416 (731)
+.++..++.+..+|. ...++|+.|++++|.+..+++..|..+++|++|++++| .+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 566777777777764 23578888899888888888777888888999999888 66665 6778888889999998886
Q ss_pred -CCCc-chHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCC
Q 038165 417 -ITGL-PQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRL 494 (731)
Q Consensus 417 -l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L 494 (731)
+..+ |..+..+++|++|++++| .++.++...+.++++|++|++++|.+...+ + ..+..++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------~---~~~~~l~-- 153 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALP------------D---DTFRDLG-- 153 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------T---TTTTTCT--
T ss_pred CccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccC------------H---hHhccCC--
Confidence 8777 667888888899998888 566665555788888888888888765321 0 0111222
Q ss_pred cEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccC
Q 038165 495 NVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFR 574 (731)
Q Consensus 495 ~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 574 (731)
+|+.|++++|.........+..+++|++|++++|.+..+.+..+. .++
T Consensus 154 ------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------~l~ 201 (285)
T 1ozn_A 154 ------------------------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR--------DLG 201 (285)
T ss_dssp ------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--------TCT
T ss_pred ------------------------CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc--------Ccc
Confidence 344444444443333333466677777777777777665444332 267
Q ss_pred CccEEEEeccCC-CCC-chhhccCCccEEeeeccc
Q 038165 575 SLNTVVLRSCRG-KDL-TWLVFVQNLKVLYIGFCG 607 (731)
Q Consensus 575 ~L~~L~L~~c~~-~~~-~~l~~l~~L~~L~L~~~~ 607 (731)
+|+.|++++|.. ..+ ..+..+++|+.|+|++++
T Consensus 202 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 777777777777 333 346677777777777664
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=5.2e-18 Score=189.84 Aligned_cols=253 Identities=20% Similarity=0.155 Sum_probs=199.7
Q ss_pred eEEEEcCCccccCccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC
Q 038165 316 NFLVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS 395 (731)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 395 (731)
..+...+..+..+|.... ++++.+++.+|.+..++. .+++|++|++++|.++.+|. .+++|++|++++| .+.
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~ 114 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLT 114 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCC
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCC
Confidence 345555566666665333 799999999999999887 78999999999999998887 5799999999999 899
Q ss_pred cccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhh
Q 038165 396 TLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEAN 475 (731)
Q Consensus 396 ~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 475 (731)
.+|. .+.+|++|++++|+++.+|.. +++|++|++++| .++.+|. .+++|+.|++++|.+..+
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l------- 176 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL------- 176 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC-------
T ss_pred CCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC-------
Confidence 9987 578999999999999999974 589999999999 7788876 357899999999988743
Q ss_pred hhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCcc
Q 038165 476 VLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLE 555 (731)
Q Consensus 476 ~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 555 (731)
+ ..+++|+.+++..+... ..+...++|+.|++++|....... .+++|+.|++++|.+.
T Consensus 177 ------~------~~~~~L~~L~Ls~N~l~------~l~~~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 177 ------P------MLPSGLQELSVSDNQLA------SLPTLPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLT 234 (622)
T ss_dssp ------C------CCCTTCCEEECCSSCCS------CCCCCCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCS
T ss_pred ------c------ccCCCCcEEECCCCCCC------CCCCccchhhEEECcCCcccccCC----CCCCCCEEEccCCccC
Confidence 2 33466777776654432 222334689999999987443321 2488999999999887
Q ss_pred ceeecCccccccccccccCCccEEEEeccCCCCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCc
Q 038165 556 EMKIDCPEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQL 635 (731)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L 635 (731)
.++ ..+++|+.|+|++|....++. .+++|+.|+|++| .++.+ |..+..+++|
T Consensus 235 ~lp------------~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N-~L~~l-------------p~~l~~l~~L 286 (622)
T 3g06_A 235 SLP------------VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRN-QLTRL-------------PESLIHLSSE 286 (622)
T ss_dssp CCC------------CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS-CCCSC-------------CGGGGGSCTT
T ss_pred cCC------------CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCC-CCCcC-------------CHHHhhcccc
Confidence 764 126899999999998843333 7899999999998 45554 5678899999
Q ss_pred cEeeccccc
Q 038165 636 ESLSVWRGI 644 (731)
Q Consensus 636 ~~L~L~~~~ 644 (731)
+.|+|++++
T Consensus 287 ~~L~L~~N~ 295 (622)
T 3g06_A 287 TTVNLEGNP 295 (622)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCCC
Confidence 999999975
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=7e-20 Score=189.72 Aligned_cols=263 Identities=18% Similarity=0.142 Sum_probs=202.0
Q ss_pred cccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEe
Q 038165 334 WEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLD 411 (731)
Q Consensus 334 ~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~ 411 (731)
.++++.+++++|.+..++ .+..+++|++|++++|.+...++ +..+++|++|++++| .+..+|. .++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEEE
Confidence 358999999999998875 46899999999999999887776 889999999999999 7777763 48999999
Q ss_pred ccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhh-cc
Q 038165 412 LSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKEL-LG 490 (731)
Q Consensus 412 L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~ 490 (731)
+++|.++.+|.. .+++|++|++++| .++.+++..++.+++|++|++++|.+.+. ....+ ..
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~~~ 167 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV---------------NFAELAAS 167 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEE---------------EGGGGGGG
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcc---------------cHHHHhhc
Confidence 999999998754 4789999999999 67777765588999999999999987632 11111 12
Q ss_pred CCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccc
Q 038165 491 LKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFR 570 (731)
Q Consensus 491 L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 570 (731)
++ .|+.|++++|..... .....+++|++|++++|.+..++..+
T Consensus 168 l~--------------------------~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~--------- 210 (317)
T 3o53_A 168 SD--------------------------TLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPEF--------- 210 (317)
T ss_dssp TT--------------------------TCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGGG---------
T ss_pred cC--------------------------cCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchhhh---------
Confidence 33 455555555553222 22335789999999999998876553
Q ss_pred cccCCccEEEEeccCC-CCCchhhccCCccEEeeeccccc-ccccccccccccccccCCCCccCcCccEeeccccccccc
Q 038165 571 NGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDM-EEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKS 648 (731)
Q Consensus 571 ~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 648 (731)
..+++|+.|++++|.. ..+..+..+++|+.|+|++|.-. ..+ +..+..+++|+.|.+.+++.++.
T Consensus 211 ~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~-------------~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL-------------RDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHH-------------HHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCH-------------HHHHhccccceEEECCCchhccC
Confidence 2379999999999998 66677889999999999988643 222 34667889999999998888877
Q ss_pred cCCCCcCCCCccEEeeccccCCC
Q 038165 649 VYPNPLPFPKLKKIEVRECRQLK 671 (731)
Q Consensus 649 l~~~~~~lp~L~~L~l~~C~~L~ 671 (731)
........+.+....-..|..+.
T Consensus 278 ~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 278 QNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp SSSCCCSSTTCEEETTEEEBCCT
T ss_pred CchhccCCCceecccceeeccCC
Confidence 65555555666665555666654
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.1e-18 Score=177.95 Aligned_cols=215 Identities=25% Similarity=0.340 Sum_probs=172.0
Q ss_pred cCCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-
Q 038165 321 AGVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL- 397 (731)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l- 397 (731)
.+..+..+|. .-.++++.+++.+|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++|..+..+
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 19 PQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp CSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred CcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC
Confidence 3444555553 23468999999999999876 3789999999999999999997777999999999999999437777
Q ss_pred cccccCCcCCCEEeccCCCCCCc-chHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhh
Q 038165 398 PSGISSLVSLHHLDLSSADITGL-PQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANV 476 (731)
Q Consensus 398 P~~i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 476 (731)
|..+..+++|++|++++|.++.+ |..+.++++|++|++++| .++.+|...++.+++|++|++++|.+.+.+
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------- 169 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVP------- 169 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEEC-------
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccC-------
Confidence 77899999999999999999997 556889999999999999 678888776899999999999999776321
Q ss_pred hcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccc
Q 038165 477 LCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEE 556 (731)
Q Consensus 477 ~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 556 (731)
. ..+..++ .|+.|++++|......+..+..+++|+.|++++|.+..
T Consensus 170 ------~--~~~~~l~--------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 170 ------E--RAFRGLH--------------------------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp ------T--TTTTTCT--------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ------H--HHhcCcc--------------------------ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 1 1122222 55666666666555556668889999999999999887
Q ss_pred eeecCccccccccccccCCccEEEEeccCC
Q 038165 557 MKIDCPEEVKKLFRNGFRSLNTVVLRSCRG 586 (731)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 586 (731)
++...+. .+++|+.|++++|+.
T Consensus 216 ~~~~~~~--------~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 216 LPTEALA--------PLRALQYLRLNDNPW 237 (285)
T ss_dssp CCHHHHT--------TCTTCCEEECCSSCE
T ss_pred CCHHHcc--------cCcccCEEeccCCCc
Confidence 6554333 389999999999987
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.4e-18 Score=190.56 Aligned_cols=243 Identities=17% Similarity=0.115 Sum_probs=181.5
Q ss_pred CCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEe
Q 038165 354 PTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYL 433 (731)
Q Consensus 354 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 433 (731)
..+++|++|++++|.+..+++..|..+++|++|+|++| .+...++ ++.+++|++|+|++|.++.+|. .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 45668999999999988888777899999999999999 6766664 8899999999999999888774 3889999
Q ss_pred ecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCC
Q 038165 434 NLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKY 513 (731)
Q Consensus 434 ~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~ 513 (731)
++++| .+..+|.. .+++|++|++++|.+.+.+ +..++. +
T Consensus 105 ~L~~N-~l~~~~~~---~l~~L~~L~L~~N~l~~~~------------~~~~~~---l---------------------- 143 (487)
T 3oja_A 105 HAANN-NISRVSCS---RGQGKKNIYLANNKITMLR------------DLDEGC---R---------------------- 143 (487)
T ss_dssp ECCSS-CCCCEEEC---CCSSCEEEECCSSCCCSGG------------GBCGGG---G----------------------
T ss_pred ECcCC-cCCCCCcc---ccCCCCEEECCCCCCCCCC------------chhhcC---C----------------------
Confidence 99998 66777653 5688999999998776431 111211 1
Q ss_pred chhhccceEEEEeecCCCCccccccc-ccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-CCCch
Q 038165 514 PKLVSITQSVWVYQCESAPFNVLHLA-YMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTW 591 (731)
Q Consensus 514 ~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~ 591 (731)
++|+.|++++|......+..+. .+++|+.|++++|.+..++... .+++|+.|+|++|.. ..++.
T Consensus 144 ----~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~----------~l~~L~~L~Ls~N~l~~~~~~ 209 (487)
T 3oja_A 144 ----SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----------VFAKLKTLDLSSNKLAFMGPE 209 (487)
T ss_dssp ----SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC----------CCTTCCEEECCSSCCCEECGG
T ss_pred ----CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc----------cCCCCCEEECCCCCCCCCCHh
Confidence 3566677777765555555554 7899999999999988763322 378999999999998 66677
Q ss_pred hhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccc-cccCCCCcCCCCccEEeeccccCC
Q 038165 592 LVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINL-KSVYPNPLPFPKLKKIEVRECRQL 670 (731)
Q Consensus 592 l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L-~~l~~~~~~lp~L~~L~l~~C~~L 670 (731)
+..+++|+.|+|++|. +..+ |..+..+++|+.|++.+++-. ..++.....++.|+.+.+..+..+
T Consensus 210 ~~~l~~L~~L~Ls~N~-l~~l-------------p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 210 FQSAAGVTWISLRNNK-LVLI-------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp GGGGTTCSEEECTTSC-CCEE-------------CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCCCccEEEecCCc-Cccc-------------chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccc
Confidence 8899999999999874 4444 556788899999999886543 244444556778888887644443
Q ss_pred C
Q 038165 671 K 671 (731)
Q Consensus 671 ~ 671 (731)
+
T Consensus 276 ~ 276 (487)
T 3oja_A 276 T 276 (487)
T ss_dssp T
T ss_pred c
Confidence 3
No 67
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.77 E-value=3.9e-21 Score=217.25 Aligned_cols=183 Identities=15% Similarity=0.208 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHHHHhhCCC-cceEee-ecCCcccccccccccccccccccHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038165 116 GRKVVMLTDRVINLRKDGE-KIEVVV-EKAPDGAAIELPLAQTIVGQELLVDRLAETLARECGGLPLALKTVGRAMKSQR 193 (731)
Q Consensus 116 gsrv~~~~~~~~~l~~~~~-~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~iv~~c~GlPLal~~~g~~L~~~~ 193 (731)
|++|++|||+.......+. .+.+.. .++..+++.++|...+ ++......+.+++|+++|+|+||||+.+|+.|+.+
T Consensus 257 ~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~-~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~- 334 (591)
T 1z6t_A 257 QCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV-NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDF- 334 (591)
T ss_dssp SCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHH-TSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred CCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHh-CCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcC-
Confidence 4455555555444433222 122221 3678888999988776 44333356789999999999999999999999874
Q ss_pred ChhHHHHHHHHhhcccCC-C----CCChHHHHhhhhhhccCCChhhHHHHHhHhcccCCCcccChhhHHHHHHHcCcccc
Q 038165 194 KVGDWKRAIHKMTTSASK-F----SGMKEEVFSRLKFSYDSLSTDELRSCLLYCCLYPEDYEIPRRELIDYWISEGFVYD 268 (731)
Q Consensus 194 ~~~~W~~~l~~l~~~~~~-~----~~~~~~i~~~L~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~w~a~g~~~~ 268 (731)
..+|+.+++.+...... + ......+..++..||+.||+ +.|.||+++|+||+|+.++.+.+...|.+++
T Consensus 335 -~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~---- 408 (591)
T 1z6t_A 335 -PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET---- 408 (591)
T ss_dssp -TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH----
T ss_pred -chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccCH----
Confidence 34799999998865432 1 11224799999999999999 8999999999999999999999999997653
Q ss_pred chhhhhHHHHHHHhhccccc---CCCccchhhHHHHHHHHHh
Q 038165 269 FDDGCDFIDDLLQACLLEEE---GDDHVKMHDMIREMSLWIA 307 (731)
Q Consensus 269 ~~~g~~~~~~L~~~sli~~~---~~~~~~mhdli~dl~~~i~ 307 (731)
+.+..++++|+++||++.. ....|.||++++++++...
T Consensus 409 -~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 -EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp -HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 5677899999999999865 2347999999999998874
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1e-17 Score=170.66 Aligned_cols=133 Identities=21% Similarity=0.278 Sum_probs=112.9
Q ss_pred ccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEE
Q 038165 331 IEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHL 410 (731)
Q Consensus 331 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L 410 (731)
.....+++.+++.++.+..+|... .++++.|++++|.+..+++..|..+++|++|++++| .+..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 344567888999999888886532 378999999999988888777899999999999999 78888754 788999999
Q ss_pred eccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCC
Q 038165 411 DLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCS 467 (731)
Q Consensus 411 ~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 467 (731)
++++|.++.+|..+..+++|++|++++| .++.+|.+.+.++++|++|++++|.+.+
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 9999999999988899999999999999 7788887668899999999999987663
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=8.4e-19 Score=192.31 Aligned_cols=238 Identities=18% Similarity=0.132 Sum_probs=186.2
Q ss_pred cccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEe
Q 038165 334 WEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLD 411 (731)
Q Consensus 334 ~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~ 411 (731)
.++++.|++++|.+..++ .+..+++|++|++++|.+...++ +..+++|++|+|++| .+..+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 348999999999999875 57899999999999999887776 889999999999999 8887774 38999999
Q ss_pred ccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhc-c
Q 038165 412 LSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELL-G 490 (731)
Q Consensus 412 L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-~ 490 (731)
+++|.+..+|.. .+++|++|++++| .++.+++..++++++|++|++++|.+.+. ....+. .
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~l~~~ 167 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV---------------NFAELAAS 167 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEE---------------EGGGGGGG
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCc---------------ChHHHhhh
Confidence 999999998753 5799999999999 56666554488999999999999987732 111221 2
Q ss_pred CCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccc
Q 038165 491 LKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFR 570 (731)
Q Consensus 491 L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 570 (731)
++ .|+.|++++|..... .....+++|+.|++++|.+..+++.+
T Consensus 168 l~--------------------------~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~--------- 210 (487)
T 3oja_A 168 SD--------------------------TLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPEF--------- 210 (487)
T ss_dssp TT--------------------------TCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGGG---------
T ss_pred CC--------------------------cccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCHhH---------
Confidence 33 455566666653332 23446899999999999998876653
Q ss_pred cccCCccEEEEeccCC-CCCchhhccCCccEEeeeccccc-ccccccccccccccccCCCCccCcCccEeeccccccc
Q 038165 571 NGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDM-EEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINL 646 (731)
Q Consensus 571 ~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L 646 (731)
..+++|+.|+|++|.. ..+.++..+++|+.|++++|.-. ..+ |..+..+++|+.|.+..+..+
T Consensus 211 ~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~-------------~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL-------------RDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH-------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch-------------HHHHHhCCCCcEEeccccccc
Confidence 2389999999999999 66777889999999999988643 122 345677888888888654443
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1.3e-17 Score=171.62 Aligned_cols=125 Identities=26% Similarity=0.491 Sum_probs=68.0
Q ss_pred ccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEec
Q 038165 333 EWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDL 412 (731)
Q Consensus 333 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L 412 (731)
.+++++.+++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEEC
Confidence 344556666666555555555555555555555555555544 455555555555555 454444 4555555555555
Q ss_pred cCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCccc
Q 038165 413 SSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGC 465 (731)
Q Consensus 413 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 465 (731)
++|.++.+|. +..+++|++|++++| .++.+|. ++.+++|++|++++|.+
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcC
Confidence 5555555543 555555555555555 4444444 45555555555555533
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=3.7e-17 Score=165.01 Aligned_cols=128 Identities=22% Similarity=0.334 Sum_probs=96.7
Q ss_pred cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccccc-ccCCcCCCEEeccC
Q 038165 336 GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSG-ISSLVSLHHLDLSS 414 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~l~~L~~L~L~~ 414 (731)
..+.+++.++.+..+|... .++++.|++++|.+..+++..|..+++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4567788888877776532 267888888888888887766788888888888888 67777665 46788888888888
Q ss_pred CCCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 415 ADITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 415 ~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
|.++.+|.. +..+++|++|++++| .++.+|...++.+++|++|++++|.+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 888887754 477888888888887 566777665778888888888877655
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1.5e-17 Score=168.10 Aligned_cols=127 Identities=27% Similarity=0.439 Sum_probs=56.2
Q ss_pred ccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccccc-ccCCcCCCEEe
Q 038165 333 EWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSG-ISSLVSLHHLD 411 (731)
Q Consensus 333 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~l~~L~~L~ 411 (731)
.+++++.+.+.++.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++| .+..+|.. ++.+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEE
Confidence 33444555555554444444444444444444444444332 1444444444444444 33333322 34444444444
Q ss_pred ccCCCCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCc
Q 038165 412 LSSADITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGC 463 (731)
Q Consensus 412 L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 463 (731)
+++|+++.+|.. +..+++|++|++++| .++.+|...++.+++|++|++++|
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC
Confidence 444444444332 344444444444444 333444333344444444444444
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=2e-17 Score=167.09 Aligned_cols=121 Identities=20% Similarity=0.313 Sum_probs=102.2
Q ss_pred EeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCc
Q 038165 341 SLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGL 420 (731)
Q Consensus 341 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~l 420 (731)
.+..+.+........+++|+.|++.++.+..++. +..+++|++|++++| .+..+| .++.+++|++|++++|.++.+
T Consensus 25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 25 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp HHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCC
T ss_pred HhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCcc
Confidence 3344444455556778899999999999887765 788999999999999 777775 789999999999999999998
Q ss_pred chH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 421 PQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 421 p~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
|.. +.++++|++|++++| .++.+|...++++++|++|++++|.+.
T Consensus 101 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQ 146 (272)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccC
Confidence 765 689999999999999 678888776899999999999998765
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=2.5e-17 Score=163.03 Aligned_cols=112 Identities=20% Similarity=0.355 Sum_probs=75.7
Q ss_pred cccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEEeccC-CCCCCcch-H
Q 038165 347 IESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHLDLSS-ADITGLPQ-E 423 (731)
Q Consensus 347 ~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L~L~~-~~l~~lp~-~ 423 (731)
+..+|. -.++|+.|++++|.++.+++..|..+++|++|++++|..++.+|. .|..+++|++|++++ |.++.+|. .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 455555 334677777777777777766677777777777777722666654 566777777777776 67777664 4
Q ss_pred HhcCCcCcEeecccccccccccccccCCCCCCc---EEEeeCc
Q 038165 424 LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLE---VLRLRGC 463 (731)
Q Consensus 424 i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~---~L~l~~~ 463 (731)
+..+++|++|++++| .++.+|. ++.+++|+ +|++++|
T Consensus 101 f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred hCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCC
Confidence 566777777777777 4566665 66666666 7777776
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=1.1e-16 Score=162.16 Aligned_cols=107 Identities=24% Similarity=0.240 Sum_probs=54.0
Q ss_pred CeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEEeccCCCCCCcc-hHHhcCCcCcEeec
Q 038165 358 RLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHLDLSSADITGLP-QELKALEKLRYLNL 435 (731)
Q Consensus 358 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L 435 (731)
+|++|++++|.+..+++..|..+++|++|++++| .+..+|. .+..+++|++|++++|.++.++ ..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4555555555555555444555555555555555 4444332 4455555555555555555543 33455555555555
Q ss_pred ccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 436 EYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 436 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
++| .+..++...++.+++|++|++++|.+.
T Consensus 108 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 108 VET-NLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp TTS-CCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CCC-CccccCchhcccCCCCCEEECcCCccc
Confidence 555 334444322455555555555555443
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=1.2e-16 Score=161.98 Aligned_cols=142 Identities=27% Similarity=0.332 Sum_probs=120.5
Q ss_pred CCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc-
Q 038165 322 GVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP- 398 (731)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP- 398 (731)
+.....+|..- ...++.+++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++| .+..+|
T Consensus 16 ~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 93 (276)
T 2z62_A 16 ELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL 93 (276)
T ss_dssp TSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECT
T ss_pred CCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccCh
Confidence 33444454421 257999999999999876 5789999999999999999999888999999999999999 777665
Q ss_pred ccccCCcCCCEEeccCCCCCCcch-HHhcCCcCcEeeccccccccc--ccccccCCCCCCcEEEeeCcccCC
Q 038165 399 SGISSLVSLHHLDLSSADITGLPQ-ELKALEKLRYLNLEYAFNLSI--IPHQLISGFSNLEVLRLRGCGCCS 467 (731)
Q Consensus 399 ~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~ 467 (731)
..+..+++|++|++++|.+..++. .++++++|++|++++| .++. +|.. ++++++|++|++++|.+.+
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCc
Confidence 678999999999999999999876 6899999999999999 5555 5665 8999999999999998774
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=5.5e-17 Score=166.93 Aligned_cols=197 Identities=20% Similarity=0.284 Sum_probs=133.0
Q ss_pred cccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhc
Q 038165 347 IESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKA 426 (731)
Q Consensus 347 ~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~ 426 (731)
+........+++|+.|++.++.+..++. +..+++|++|++++| .+..+|. +..+++|++|++++|.++.+| .+..
T Consensus 31 ~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~ 105 (308)
T 1h6u_A 31 VTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAG 105 (308)
T ss_dssp TTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred cCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcC
Confidence 3333344567889999999998887763 788899999999998 8888886 888999999999999988886 6888
Q ss_pred CCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhH
Q 038165 427 LEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLA 506 (731)
Q Consensus 427 L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~ 506 (731)
+++|++|++++| .++.+|. +..+++|++|++++|.+.+. +. +..++
T Consensus 106 l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~-------------~~----l~~l~-------------- 151 (308)
T 1h6u_A 106 LQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITNI-------------SP----LAGLT-------------- 151 (308)
T ss_dssp CTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCCC-------------GG----GGGCT--------------
T ss_pred CCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCcC-------------cc----ccCCC--------------
Confidence 999999999998 6777776 88899999999998876532 11 22222
Q ss_pred HHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC
Q 038165 507 VQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG 586 (731)
Q Consensus 507 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 586 (731)
+|+.|++++|......+ +..+++|+.|++++|.+..++. ...+++|+.|++++|..
T Consensus 152 ------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----------l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 152 ------------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP----------LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp ------------TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----------GGGCTTCCEEECTTSCC
T ss_pred ------------CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh----------hcCCCCCCEEEccCCcc
Confidence 33344444443222222 5556666666666666554322 12255666666666665
Q ss_pred CCCchhhccCCccEEeeecc
Q 038165 587 KDLTWLVFVQNLKVLYIGFC 606 (731)
Q Consensus 587 ~~~~~l~~l~~L~~L~L~~~ 606 (731)
...+.+..+++|+.|++++|
T Consensus 208 ~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 208 SDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CBCGGGTTCTTCCEEEEEEE
T ss_pred CccccccCCCCCCEEEccCC
Confidence 33334556666666666655
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.3e-16 Score=160.94 Aligned_cols=104 Identities=25% Similarity=0.335 Sum_probs=75.2
Q ss_pred CeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEEeccCCCCCCcchHH-hcCCcCcEeec
Q 038165 358 RLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHLDLSSADITGLPQEL-KALEKLRYLNL 435 (731)
Q Consensus 358 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L 435 (731)
..++++++++.++.+|..+ .++|++|++++| .+..+|. .|..+++|++|++++|.++.+|..+ .++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4567777777777777652 356788888887 6666654 5777788888888888777777654 66778888888
Q ss_pred ccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 436 EYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 436 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
++| .++.+|...+.++++|++|++++|.+.
T Consensus 93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 93 TDN-KLQALPIGVFDQLVNLAELRLDRNQLK 122 (270)
T ss_dssp CSS-CCCCCCTTTTTTCSSCCEEECCSSCCC
T ss_pred CCC-cCCcCCHhHcccccCCCEEECCCCccC
Confidence 877 566777665677777888887777554
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=5.2e-17 Score=160.80 Aligned_cols=93 Identities=25% Similarity=0.332 Sum_probs=68.0
Q ss_pred ccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEEeccCCC-CCCcch-HHhcCCcCcEeeccccccccccc
Q 038165 369 IVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHLDLSSAD-ITGLPQ-ELKALEKLRYLNLEYAFNLSIIP 445 (731)
Q Consensus 369 l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp 445 (731)
++.+|. + .++|++|++++| .++.+|. .|+.+++|++|++++|. ++.+|. .+.++++|++|++++|..++.+|
T Consensus 23 l~~ip~--~--~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--L--PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--C--CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--C--CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 556665 2 347888888888 6777665 57778888888888885 777765 56778888888888733677777
Q ss_pred ccccCCCCCCcEEEeeCcccC
Q 038165 446 HQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 446 ~~~i~~l~~L~~L~l~~~~~~ 466 (731)
...+.++++|++|++++|.+.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCC
T ss_pred HHHhCCCCCCCEEeCCCCCCc
Confidence 665778888888888877665
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1.8e-18 Score=178.61 Aligned_cols=240 Identities=18% Similarity=0.102 Sum_probs=161.3
Q ss_pred ccceEEEeecCCcccCCC-CCCCCCeeEEEcccCCccc--cChhhhc-------CCCCccEEEcCCCCCCCcccccc--c
Q 038165 335 EGAKRVSLMGNGIESLSE-IPTCPRLVTLLVDENPIVE--ITDGFFQ-------SMSSLRVLSLSENFHLSTLPSGI--S 402 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~--~~~~~~~-------~l~~L~~L~L~~~~~~~~lP~~i--~ 402 (731)
.+++.+.+.+|.+ .+|. +.. .|+.|++++|.+.. ++.. +. .+++|++|++++|.....+|..+ +
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4566666777777 4433 222 28888888888643 4443 32 68999999999993334788876 8
Q ss_pred CCcCCCEEeccCCCCCCcchHHhcC-----CcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhh
Q 038165 403 SLVSLHHLDLSSADITGLPQELKAL-----EKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVL 477 (731)
Q Consensus 403 ~l~~L~~L~L~~~~l~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 477 (731)
.+++|++|++++|.++.+|..++.+ ++|++|++++| .++.+|...++++++|++|++++|.+.+.
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------- 188 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGE--------- 188 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHH---------
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcc---------
Confidence 9999999999999999999888888 89999999999 66777755589999999999999875521
Q ss_pred cCCcccchhhh--ccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCccc---ccccccCCccEEeccCC
Q 038165 478 CADAEPLMKEL--LGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNV---LHLAYMENLQELDLEYC 552 (731)
Q Consensus 478 ~~~~~~~i~~l--~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~ 552 (731)
...+..+ ..++ +|+.|++++|....... ..+..+++|++|++++|
T Consensus 189 ----~~~~~~~~~~~l~--------------------------~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 189 ----RGLISALCPLKFP--------------------------TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp ----HHHHHHSCTTSCT--------------------------TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred ----hHHHHHHHhccCC--------------------------CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 0011122 3333 44555555554322111 11345677888888887
Q ss_pred Ccccee-ecCccccccccccccCCccEEEEeccCC-CCCchhhccCCccEEeeecccccccccccccccccccccCCCCc
Q 038165 553 NLEEMK-IDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERN 630 (731)
Q Consensus 553 ~~~~~~-~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~ 630 (731)
.+...+ .... ..+++|+.|++++|.. ..+.++. ++|++|+|++| .++.+ |. +.
T Consensus 239 ~l~~~~~~~~~--------~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~-------------p~-~~ 293 (312)
T 1wwl_A 239 SLRDAAGAPSC--------DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN-RLDRN-------------PS-PD 293 (312)
T ss_dssp CCCSSCCCSCC--------CCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS-CCCSC-------------CC-TT
T ss_pred cCCcccchhhh--------hhcCCCCEEECCCCccChhhhhcc--CCceEEECCCC-CCCCC-------------hh-Hh
Confidence 776632 1211 1257788888888777 5555554 77888888776 33333 33 66
Q ss_pred cCcCccEeecccc
Q 038165 631 FFAQLESLSVWRG 643 (731)
Q Consensus 631 ~~~~L~~L~L~~~ 643 (731)
.+++|++|++++.
T Consensus 294 ~l~~L~~L~L~~N 306 (312)
T 1wwl_A 294 ELPQVGNLSLKGN 306 (312)
T ss_dssp TSCEEEEEECTTC
T ss_pred hCCCCCEEeccCC
Confidence 7788888888774
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=2.7e-16 Score=160.07 Aligned_cols=198 Identities=21% Similarity=0.209 Sum_probs=137.3
Q ss_pred CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccCCCCCCcchHHhcCCcCc
Q 038165 353 IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSSADITGLPQELKALEKLR 431 (731)
Q Consensus 353 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 431 (731)
+.++++++++++.++.++.+|..+ .+++++|++++| .+..+ |..+..+++|++|++++|.++.+|.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 356778888999888888888763 367889999988 66655 56788889999999999988888765 7888899
Q ss_pred EeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhh
Q 038165 432 YLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFL 511 (731)
Q Consensus 432 ~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~ 511 (731)
+|++++| .++.+|.. +..+++|++|++++|.+.+.+ +. .+..+.
T Consensus 81 ~L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~------------~~---~~~~l~------------------- 124 (290)
T 1p9a_G 81 TLDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTSLP------------LG---ALRGLG------------------- 124 (290)
T ss_dssp EEECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCCCC------------SS---TTTTCT-------------------
T ss_pred EEECCCC-cCCcCchh-hccCCCCCEEECCCCcCcccC------------HH---HHcCCC-------------------
Confidence 9999988 67788876 788888999999888766331 01 111122
Q ss_pred CCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-CCCc
Q 038165 512 KYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLT 590 (731)
Q Consensus 512 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~ 590 (731)
+|+.|++++|......+..+..+++|+.|++++|.+..++...+. .+++|+.|+|++|.. ..+.
T Consensus 125 -------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--------~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 125 -------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--------GLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp -------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT--------TCTTCCEEECCSSCCCCCCT
T ss_pred -------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc--------CcCCCCEEECCCCcCCccCh
Confidence 344555555544444444456667777777777766665544432 266777777777766 5556
Q ss_pred hhhccCCccEEeeecc
Q 038165 591 WLVFVQNLKVLYIGFC 606 (731)
Q Consensus 591 ~l~~l~~L~~L~L~~~ 606 (731)
.+..+++|+.|+|+++
T Consensus 190 ~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTTTTCCCSEEECCSC
T ss_pred hhcccccCCeEEeCCC
Confidence 6666667777777655
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=9.5e-19 Score=191.69 Aligned_cols=309 Identities=16% Similarity=0.160 Sum_probs=167.0
Q ss_pred cccceEEEeecCCcccC--CCC-CCCC----CeeEEEcccCCcccc----ChhhhcCCCCccEEEcCCCCCCCc-ccccc
Q 038165 334 WEGAKRVSLMGNGIESL--SEI-PTCP----RLVTLLVDENPIVEI----TDGFFQSMSSLRVLSLSENFHLST-LPSGI 401 (731)
Q Consensus 334 ~~~l~~l~l~~~~~~~l--~~~-~~~~----~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~-lP~~i 401 (731)
.++++.+++++|.+... ..+ ..++ +|++|++++|.+... .+..+..+++|++|++++| .+.. .+..+
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l 133 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLL 133 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHH
Confidence 35666666666665431 111 1122 566666666665432 1333566666666666666 3332 11111
Q ss_pred -----cCCcCCCEEeccCCCCCC-----cchHHhcCCcCcEeecccccccccccccccC-----CCCCCcEEEeeCcccC
Q 038165 402 -----SSLVSLHHLDLSSADITG-----LPQELKALEKLRYLNLEYAFNLSIIPHQLIS-----GFSNLEVLRLRGCGCC 466 (731)
Q Consensus 402 -----~~l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~-----~l~~L~~L~l~~~~~~ 466 (731)
....+|++|++++|.++. ++..+..+++|++|++++|. ++..+...+. .+++|++|++++|.+.
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 123456666666666654 34555666677777777663 3322111111 3456777777776555
Q ss_pred CCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhH--HHhhhC-CchhhccceEEEEeecCCCCcc----ccccc
Q 038165 467 SVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLA--VQKFLK-YPKLVSITQSVWVYQCESAPFN----VLHLA 539 (731)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~--~~~l~~-~~~~~~~L~~L~l~~~~~~~~~----~~~l~ 539 (731)
.. ........+..+++|+.+++..+.... ...+.. .....+.|+.|++++|...... +..+.
T Consensus 213 ~~-----------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 213 SD-----------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp TT-----------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 21 000123334556677777766544322 111111 1112357888888888643321 23366
Q ss_pred ccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-C-----CCchhhccCCccEEeeeccccccccc
Q 038165 540 YMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-K-----DLTWLVFVQNLKVLYIGFCGDMEEIV 613 (731)
Q Consensus 540 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~-----~~~~l~~l~~L~~L~L~~~~~l~~l~ 613 (731)
.+++|++|++++|.+.......+.. ......++|+.|++++|.. . .+.++..+++|++|+|++|. +....
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~---~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 357 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCE---TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAG 357 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHH---HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHH
T ss_pred hCCCcceEECCCCCCchHHHHHHHH---HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-ccccc
Confidence 6788888888888775422111110 0001236888999988887 2 23455677889999998873 43321
Q ss_pred ccccccccccccCCCC-ccCcCccEeecccccccc-----ccCCCCcCCCCccEEeecccc
Q 038165 614 SVDKLRDISGIIGSER-NFFAQLESLSVWRGINLK-----SVYPNPLPFPKLKKIEVRECR 668 (731)
Q Consensus 614 ~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~L~-----~l~~~~~~lp~L~~L~l~~C~ 668 (731)
.. .+ ...+ ...++|++|++++| .+. .++.....+++|++|++++|+
T Consensus 358 ~~----~l----~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 358 VR----EL----CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HH----HH----HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HH----HH----HHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 10 00 0011 12678999999887 444 455444557889999998874
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=1.7e-17 Score=187.85 Aligned_cols=318 Identities=11% Similarity=0.069 Sum_probs=157.6
Q ss_pred cccceEEEeecCCcccCC------CCCCCCCeeEEEcccCCccccC----hhhhcCCCCccEEEcCCCCCCCcccccccC
Q 038165 334 WEGAKRVSLMGNGIESLS------EIPTCPRLVTLLVDENPIVEIT----DGFFQSMSSLRVLSLSENFHLSTLPSGISS 403 (731)
Q Consensus 334 ~~~l~~l~l~~~~~~~l~------~~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~ 403 (731)
.++++.+++.+|.+.... ....+++|++|+++++.+..+. ...+..+++|++|++++| .+..+|..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhh
Confidence 345556666555443221 1134555666666555544222 122345566666666665 55555555555
Q ss_pred CcCCCEEeccCCCC----CCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcC
Q 038165 404 LVSLHHLDLSSADI----TGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCA 479 (731)
Q Consensus 404 l~~L~~L~L~~~~l----~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 479 (731)
+++|++|++++... ...+..+..+++|+.|+++++ ....+|.. +..+++|++|++++|.+.
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~------------- 306 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLE------------- 306 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCC-------------
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCC-------------
Confidence 56666666553211 112333444555555555544 33445543 566777888888877643
Q ss_pred Ccccch-hhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEee----------cCCCCcc-ccc-ccccCCccE
Q 038165 480 DAEPLM-KELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQ----------CESAPFN-VLH-LAYMENLQE 546 (731)
Q Consensus 480 ~~~~~i-~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~~~~~~~-~~~-l~~l~~L~~ 546 (731)
...+ .-+..+++|+.+.+. .......+.......++|+.|++++ |...... ... ...+++|++
T Consensus 307 --~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 307 --TEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp --HHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred --HHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 1122 224566777777776 2222222222223345788888884 4322211 111 345778888
Q ss_pred EeccCCCccceeecCccccccccccccCCccEEEEeccC---C-CCC-------chhhccCCccEEeeecccc-cccccc
Q 038165 547 LDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCR---G-KDL-------TWLVFVQNLKVLYIGFCGD-MEEIVS 614 (731)
Q Consensus 547 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~---~-~~~-------~~l~~l~~L~~L~L~~~~~-l~~l~~ 614 (731)
|+++.+.+....+.... ..+++|+.|++++|. . ... ..+..+++|+.|+|+.|.+ +.....
T Consensus 383 L~l~~~~l~~~~~~~l~-------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 383 MAVYVSDITNESLESIG-------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp EEEEESCCCHHHHHHHH-------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred EEeecCCccHHHHHHHH-------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 88866655441111110 125677777777432 2 221 1134577777777766543 111100
Q ss_pred cccccccccccCCCCccCcCccEeeccccccccc--cCCCCcCCCCccEEeeccccCCCC--CCCCCCCCC-CcceEEec
Q 038165 615 VDKLRDISGIIGSERNFFAQLESLSVWRGINLKS--VYPNPLPFPKLKKIEVRECRQLKK--LPLNSSSAK-ERRVVIEG 689 (731)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~--l~~~~~~lp~L~~L~l~~C~~L~~--lP~~~~~~~-L~~l~i~~ 689 (731)
......+++|++|.+++|. +.. ++.....+++|++|++++|+ ++. ++......+ |+.+++.+
T Consensus 456 -----------~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 456 -----------SYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp -----------HHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEES
T ss_pred -----------HHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcC
Confidence 0111235667777776653 322 12122345667777777776 332 222111122 66666666
Q ss_pred ch
Q 038165 690 SK 691 (731)
Q Consensus 690 ~~ 691 (731)
|.
T Consensus 523 n~ 524 (592)
T 3ogk_B 523 YR 524 (592)
T ss_dssp CB
T ss_pred Cc
Confidence 64
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=9.5e-18 Score=173.23 Aligned_cols=240 Identities=17% Similarity=0.167 Sum_probs=160.5
Q ss_pred CCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC--ccccccc-------CCcCCCEEeccCCCCC-CcchHH
Q 038165 355 TCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS--TLPSGIS-------SLVSLHHLDLSSADIT-GLPQEL 424 (731)
Q Consensus 355 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~--~lP~~i~-------~l~~L~~L~L~~~~l~-~lp~~i 424 (731)
..++|+.|++.+|.+ .+|..+... |++|++++| .+. .+|..+. .+.+|++|++++|.++ .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 345666677777777 666653332 777777777 443 3555554 5777777777777776 366665
Q ss_pred --hcCCcCcEeecccccccccccccccCCC-----CCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEE
Q 038165 425 --KALEKLRYLNLEYAFNLSIIPHQLISGF-----SNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVL 497 (731)
Q Consensus 425 --~~L~~L~~L~L~~~~~l~~lp~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l 497 (731)
..+++|++|++++| .++.+|.. ++.+ ++|++|++++|.+.+.+ ...+..++
T Consensus 116 ~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~---------------~~~~~~l~----- 173 (312)
T 1wwl_A 116 LEATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFS---------------CEQVRVFP----- 173 (312)
T ss_dssp SSCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCC---------------TTTCCCCS-----
T ss_pred HHhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccch---------------HHHhccCC-----
Confidence 67777777777777 45555543 5555 77777777777665321 11223333
Q ss_pred EEEeechhHHHhhhCCchhhccceEEEEeecCCCCc--cccc--ccccCCccEEeccCCCcccee---ecCccccccccc
Q 038165 498 SWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPF--NVLH--LAYMENLQELDLEYCNLEEMK---IDCPEEVKKLFR 570 (731)
Q Consensus 498 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~--l~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~~ 570 (731)
+|+.|++++|...+. .+.. +..+++|++|++++|.+..++ ....
T Consensus 174 ---------------------~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-------- 224 (312)
T 1wwl_A 174 ---------------------ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA-------- 224 (312)
T ss_dssp ---------------------SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH--------
T ss_pred ---------------------CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH--------
Confidence 455555555542221 1112 378899999999999987421 1111
Q ss_pred cccCCccEEEEeccCC-CCC--chhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeecccccccc
Q 038165 571 NGFRSLNTVVLRSCRG-KDL--TWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLK 647 (731)
Q Consensus 571 ~~l~~L~~L~L~~c~~-~~~--~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 647 (731)
..+++|+.|++++|.. ..+ +.+..+++|++|+|++|. ++.+ |..+. ++|++|+++++ .+.
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~i-------------p~~~~--~~L~~L~Ls~N-~l~ 287 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQV-------------PKGLP--AKLSVLDLSYN-RLD 287 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSC-------------CSSCC--SEEEEEECCSS-CCC
T ss_pred hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChh-------------hhhcc--CCceEEECCCC-CCC
Confidence 2368999999999998 333 456678999999999984 4444 44444 89999999985 788
Q ss_pred ccCCCCcCCCCccEEeecccc
Q 038165 648 SVYPNPLPFPKLKKIEVRECR 668 (731)
Q Consensus 648 ~l~~~~~~lp~L~~L~l~~C~ 668 (731)
.+|. ...+++|++|++++.+
T Consensus 288 ~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 288 RNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCC-TTTSCEEEEEECTTCT
T ss_pred CChh-HhhCCCCCEEeccCCC
Confidence 8876 7789999999998864
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1e-15 Score=160.63 Aligned_cols=235 Identities=16% Similarity=0.147 Sum_probs=137.7
Q ss_pred EEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEEeccCCCCCC-cchH-HhcCCcCcEeeccc
Q 038165 361 TLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHLDLSSADITG-LPQE-LKALEKLRYLNLEY 437 (731)
Q Consensus 361 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L~L~~~~l~~-lp~~-i~~L~~L~~L~L~~ 437 (731)
+++.+++.++.+|.++ .+++++|+|++| .++.+|. .|.++++|++|+|++|.+.+ +|.. +.++++|+.+...+
T Consensus 13 ~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3344444455555442 245566666666 5555554 35566666666666665433 4432 34555555544433
Q ss_pred ccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhh
Q 038165 438 AFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLV 517 (731)
Q Consensus 438 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~ 517 (731)
+..++.+|++.+..+++|++|++++|.+...+ . ... +..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-------------~-~~~---~~~~----------------------- 128 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-------------D-VHK---IHSL----------------------- 128 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-------------C-CTT---CCBS-----------------------
T ss_pred CCcccccCchhhhhccccccccccccccccCC-------------c-hhh---cccc-----------------------
Confidence 33566665555666666666666666554321 0 000 0001
Q ss_pred ccceEEEEeecCCC-Cccccccccc-CCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC--CCC-chh
Q 038165 518 SITQSVWVYQCESA-PFNVLHLAYM-ENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDL-TWL 592 (731)
Q Consensus 518 ~~L~~L~l~~~~~~-~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~-~~l 592 (731)
.+..|.+.++... ......+..+ ..++.|++++|.+..++...+. ..+|+.|.+.+++. ..+ ..+
T Consensus 129 -~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~---------~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 129 -QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN---------GTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp -SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST---------TEEEEEEECTTCTTCCCCCTTTT
T ss_pred -hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc---------ccchhHHhhccCCcccCCCHHHh
Confidence 1222222222111 1111223333 4688899999999887666543 46788999986555 333 346
Q ss_pred hccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCCcCCCCccEEeecc
Q 038165 593 VFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNPLPFPKLKKIEVRE 666 (731)
Q Consensus 593 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~lp~L~~L~l~~ 666 (731)
..+++|+.|+|+++ .++.+ |. ..|.+|+.|.+.++.+++.+|. ...|++|+.+++.+
T Consensus 199 ~~l~~L~~LdLs~N-~l~~l-------------p~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 199 HGASGPVILDISRT-RIHSL-------------PS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTEECCSEEECTTS-CCCCC-------------CS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ccCcccchhhcCCC-CcCcc-------------Ch--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 88999999999987 45555 22 3578888888888889999884 66789999999864
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=2.4e-15 Score=157.83 Aligned_cols=239 Identities=16% Similarity=0.123 Sum_probs=168.5
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCE-EeccCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHH-LDLSSA 415 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~-L~L~~~ 415 (731)
+.+..++++++.+|.-- .++++.|++++|.++.++++.|.++++|++|+|++|...+.+|. .|.++++|++ +.+.+|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 35667777787776522 36889999999999999988889999999999999944466664 5678888775 555667
Q ss_pred CCCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCC
Q 038165 416 DITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRL 494 (731)
Q Consensus 416 ~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L 494 (731)
+++.+|. .+..+++|++|++++| .++.+|...+....++..|++.++..... ++. ..+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~------------l~~--~~f~----- 150 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHT------------IER--NSFV----- 150 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCE------------ECT--TSST-----
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccc------------ccc--cchh-----
Confidence 8888854 5788999999999998 67777775455666778888876532210 000 0000
Q ss_pred cEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccC-CCccceeecCcccccccccccc
Q 038165 495 NVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEY-CNLEEMKIDCPEEVKKLFRNGF 573 (731)
Q Consensus 495 ~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~l 573 (731)
.....++.|+++++........ .....+|+.|.+.+ +.+..++.+.+. .+
T Consensus 151 --------------------~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~--------~l 201 (350)
T 4ay9_X 151 --------------------GLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVFH--------GA 201 (350)
T ss_dssp --------------------TSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTTT--------TE
T ss_pred --------------------hcchhhhhhccccccccCCChh-hccccchhHHhhccCCcccCCCHHHhc--------cC
Confidence 1112456677777654333322 33456899999986 455557666554 38
Q ss_pred CCccEEEEeccCC-CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccc
Q 038165 574 RSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWR 642 (731)
Q Consensus 574 ~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 642 (731)
++|+.|+|++|.. ..++ ..+.+|+.|.+.++..++.+ | .+..|++|+.+.+.+
T Consensus 202 ~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~l-------------P-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 202 SGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKL-------------P-TLEKLVALMEASLTY 255 (350)
T ss_dssp ECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCC-------------C-CTTTCCSCCEEECSC
T ss_pred cccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcC-------------C-CchhCcChhhCcCCC
Confidence 9999999999998 4443 34788999999888888877 3 367899999999864
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=1.2e-15 Score=155.56 Aligned_cols=102 Identities=25% Similarity=0.341 Sum_probs=51.2
Q ss_pred CCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEee
Q 038165 355 TCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLN 434 (731)
Q Consensus 355 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 434 (731)
.+++|+.|++++|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++|.++.+|. +..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 34445555555555444432 444555555555555 4444443 5555555555555555555442 55555555555
Q ss_pred cccccccccccccccCCCCCCcEEEeeCcc
Q 038165 435 LEYAFNLSIIPHQLISGFSNLEVLRLRGCG 464 (731)
Q Consensus 435 L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 464 (731)
+++| .++.++. +..+++|++|++++|.
T Consensus 119 L~~n-~i~~~~~--l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 119 LEHN-GISDING--LVHLPQLESLYLGNNK 145 (291)
T ss_dssp CTTS-CCCCCGG--GGGCTTCCEEECCSSC
T ss_pred CCCC-cCCCChh--hcCCCCCCEEEccCCc
Confidence 5555 3444432 4455555555555543
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=4.2e-15 Score=148.16 Aligned_cols=128 Identities=24% Similarity=0.353 Sum_probs=100.4
Q ss_pred cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCEEeccC
Q 038165 336 GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHHLDLSS 414 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~L~L~~ 414 (731)
..+.+++.++.+..+|.... ++++.|++++|.+..+++..|..+++|++|+|++| .+..++ ..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCC
Confidence 45678888888887765322 68888888888888888777888888888888888 665554 4478888888888888
Q ss_pred CCCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 415 ADITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 415 ~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
|.++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++++|.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC
Confidence 888887754 578888888888888 677787776778888888888887655
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=4.9e-17 Score=178.03 Aligned_cols=329 Identities=16% Similarity=0.154 Sum_probs=212.2
Q ss_pred cccccceEEEeecCCcccC------CCCCCCCCeeEEEcccCCcccc-ChhhhcCCC----CccEEEcCCCCCCC-----
Q 038165 332 EEWEGAKRVSLMGNGIESL------SEIPTCPRLVTLLVDENPIVEI-TDGFFQSMS----SLRVLSLSENFHLS----- 395 (731)
Q Consensus 332 ~~~~~l~~l~l~~~~~~~l------~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~----~L~~L~L~~~~~~~----- 395 (731)
...++++.+++.++.+... ..+..+++|++|++++|.+... +..++..++ +|++|++++| .+.
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~ 103 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCG 103 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHH
Confidence 3456899999999988742 2346789999999999987653 233344555 6999999999 665
Q ss_pred cccccccCCcCCCEEeccCCCCCCc-chHHh-----cCCcCcEeeccccccccc-----ccccccCCCCCCcEEEeeCcc
Q 038165 396 TLPSGISSLVSLHHLDLSSADITGL-PQELK-----ALEKLRYLNLEYAFNLSI-----IPHQLISGFSNLEVLRLRGCG 464 (731)
Q Consensus 396 ~lP~~i~~l~~L~~L~L~~~~l~~l-p~~i~-----~L~~L~~L~L~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~ 464 (731)
.+|..+..+++|++|++++|.+... +..+. ..++|++|++++| .++. ++.. +..+++|++|++++|.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASV-LRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHH-HHHCTTCCEEECCSSB
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHH-HhhCCCCCEEECcCCC
Confidence 5688899999999999999988652 22222 2567999999999 4443 3443 6778999999999987
Q ss_pred cCCCchhhhhhhhcCCcccch-hhhc-cCCCCcEEEEEeechhH--HHhhhCCchhhccceEEEEeecCCCCccccc---
Q 038165 465 CCSVTEEEEANVLCADAEPLM-KELL-GLKRLNVLSWTFRSSLA--VQKFLKYPKLVSITQSVWVYQCESAPFNVLH--- 537 (731)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~i-~~l~-~L~~L~~l~~~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~--- 537 (731)
+.... ...+ ..+. ....|+.+++..+.... ...+.......++|+.|++++|...+.....
T Consensus 182 i~~~~------------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 182 INEAG------------VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp CHHHH------------HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred cchHH------------HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 65210 1111 1111 24567777766443221 2223332334468999999988633322211
Q ss_pred --ccccCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC--CCCchhhc-----cCCccEEeeecccc
Q 038165 538 --LAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG--KDLTWLVF-----VQNLKVLYIGFCGD 608 (731)
Q Consensus 538 --l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~-----l~~L~~L~L~~~~~ 608 (731)
...+++|++|++++|.+.......... ....+++|+.|++++|.. ..+..+.. .++|+.|++++|.
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~- 324 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCR----VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS- 324 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHH----HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHH----HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-
Confidence 235789999999999876621111000 012378999999999987 33333432 2699999999985
Q ss_pred cccccccccccccccccCCCCccCcCccEeeccccccccccCC-----C-CcCCCCccEEeeccccCCC-----CCCCCC
Q 038165 609 MEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYP-----N-PLPFPKLKKIEVRECRQLK-----KLPLNS 677 (731)
Q Consensus 609 l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-----~-~~~lp~L~~L~l~~C~~L~-----~lP~~~ 677 (731)
+..... ..+ +..+..+++|++|+++++ .+..... . ....++|++|++++|. ++ .+|...
T Consensus 325 l~~~~~----~~l----~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l 394 (461)
T 1z7x_W 325 FTAACC----SHF----SSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATL 394 (461)
T ss_dssp CBGGGH----HHH----HHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHH
T ss_pred CchHHH----HHH----HHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHH
Confidence 322210 001 335567899999999987 4543211 1 1126799999999984 55 556543
Q ss_pred CCCC-CcceEEecc
Q 038165 678 SSAK-ERRVVIEGS 690 (731)
Q Consensus 678 ~~~~-L~~l~i~~~ 690 (731)
...+ |+.+++.++
T Consensus 395 ~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 395 LANHSLRELDLSNN 408 (461)
T ss_dssp HHCCCCCEEECCSS
T ss_pred HhCCCccEEECCCC
Confidence 3333 888888876
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=2.2e-16 Score=178.66 Aligned_cols=306 Identities=17% Similarity=0.203 Sum_probs=206.3
Q ss_pred ccccceEEEeecCCcccC-----CC-CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCC---CcccccccC
Q 038165 333 EWEGAKRVSLMGNGIESL-----SE-IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHL---STLPSGISS 403 (731)
Q Consensus 333 ~~~~l~~l~l~~~~~~~l-----~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~---~~lP~~i~~ 403 (731)
..+.++.+++.++.+..+ +. +..+++|++|++.+|.+..++. .+..+++|++|+++++... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH-HHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 456899999999988633 22 2578999999999999888774 4889999999999865222 345567888
Q ss_pred CcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccc-cccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcc
Q 038165 404 LVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSII-PHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAE 482 (731)
Q Consensus 404 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 482 (731)
+.+|+.|+++++....+|..+..+++|++|++++|. ++.. ...++..+++|++|++.++ +. .
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~---------------~ 331 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IG---------------D 331 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GH---------------H
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cC---------------H
Confidence 999999999998778899999999999999999995 4322 2233689999999999943 22 1
Q ss_pred cchhh-hccCCCCcEEEEEe----------echhHHHhhhCCchhhccceEEEEeecCCCCcccccccc-cCCccEEecc
Q 038165 483 PLMKE-LLGLKRLNVLSWTF----------RSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAY-MENLQELDLE 550 (731)
Q Consensus 483 ~~i~~-l~~L~~L~~l~~~~----------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~ 550 (731)
..+.. ...+++|+.+++.. +.......+.......++|+.|.+..+...+.....+.. +++|++|+++
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 12222 24566777777772 111111122222233468999999665544433444544 8999999997
Q ss_pred CC----CccceeecCccccccccccccCCccEEEEeccCC----CCCchhh-ccCCccEEeeeccccccccccccccccc
Q 038165 551 YC----NLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG----KDLTWLV-FVQNLKVLYIGFCGDMEEIVSVDKLRDI 621 (731)
Q Consensus 551 ~~----~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~----~~~~~l~-~l~~L~~L~L~~~~~l~~l~~~~~~~~~ 621 (731)
++ .+...|.+. .. ......+++|+.|+++.|.. ..+..++ .+++|+.|+|++|. +.....
T Consensus 412 ~~~~~n~l~~~p~~~--~~-~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~------- 480 (592)
T 3ogk_B 412 LLDREERITDLPLDN--GV-RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL------- 480 (592)
T ss_dssp ECSCCSCCSSCCCHH--HH-HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH-------
T ss_pred ecCCCccccCchHHH--HH-HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH-------
Confidence 43 333221110 00 00013489999999987663 3344444 48999999999885 332111
Q ss_pred ccccCCCCccCcCccEeeccccccccc--cCCCCcCCCCccEEeeccccCCCCC
Q 038165 622 SGIIGSERNFFAQLESLSVWRGINLKS--VYPNPLPFPKLKKIEVRECRQLKKL 673 (731)
Q Consensus 622 ~~~~~~~~~~~~~L~~L~L~~~~~L~~--l~~~~~~lp~L~~L~l~~C~~L~~l 673 (731)
+..+..+++|++|+|++|+ +.. ++.....+|+|++|++++|+ ++..
T Consensus 481 ----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 481 ----MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp ----HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred ----HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 2345678999999999997 432 22223468999999999998 5543
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=3e-15 Score=152.49 Aligned_cols=130 Identities=22% Similarity=0.336 Sum_probs=117.1
Q ss_pred ccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCC
Q 038165 329 PKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLH 408 (731)
Q Consensus 329 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~ 408 (731)
.....+++++.+++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .++.+++|+
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~ 115 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLK 115 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCC
T ss_pred cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCCCCC
Confidence 3445667999999999999999999999999999999999988887 889999999999999 888877 499999999
Q ss_pred EEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 409 HLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 409 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
+|++++|+++.++ .+..+++|++|++++| .++.++. ++.+++|++|++++|.+.
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCC
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccc
Confidence 9999999999985 6899999999999999 6777754 899999999999999766
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=4.7e-16 Score=162.55 Aligned_cols=244 Identities=18% Similarity=0.158 Sum_probs=141.1
Q ss_pred eeEEEcccCCccccChhhhcCC--CCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCC--cchHHhcCCcCcEee
Q 038165 359 LVTLLVDENPIVEITDGFFQSM--SSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITG--LPQELKALEKLRYLN 434 (731)
Q Consensus 359 L~~L~l~~~~l~~~~~~~~~~l--~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~ 434 (731)
++.++++++.+. +..+..+ +++++|+++++ .+...+..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 345555555432 3334555 67777777777 555555556677777788877777654 666777777788888
Q ss_pred cccccccccccccccCCCCCCcEEEeeCcc-cCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCC
Q 038165 435 LEYAFNLSIIPHQLISGFSNLEVLRLRGCG-CCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKY 513 (731)
Q Consensus 435 L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~ 513 (731)
+++|......|.. ++++++|++|++++|. +.+ ......+..++
T Consensus 125 L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~--------------~~l~~~~~~~~--------------------- 168 (336)
T 2ast_B 125 LEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSE--------------FALQTLLSSCS--------------------- 168 (336)
T ss_dssp CTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCH--------------HHHHHHHHHCT---------------------
T ss_pred CcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCH--------------HHHHHHHhcCC---------------------
Confidence 7777432244444 6777778888877773 320 00111122233
Q ss_pred chhhccceEEEEeec-CCCCc-ccccccccC-CccEEeccCCC--ccc--eeecCccccccccccccCCccEEEEeccC-
Q 038165 514 PKLVSITQSVWVYQC-ESAPF-NVLHLAYME-NLQELDLEYCN--LEE--MKIDCPEEVKKLFRNGFRSLNTVVLRSCR- 585 (731)
Q Consensus 514 ~~~~~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~~--~~~--~~~~~~~~~~~~~~~~l~~L~~L~L~~c~- 585 (731)
+|+.|++++| ...+. .+..+..++ +|++|++++|. +.. ++.. . ..+++|+.|++++|.
T Consensus 169 -----~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~--------~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 169 -----RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-V--------RRCPNLVHLDLSDSVM 234 (336)
T ss_dssp -----TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-H--------HHCTTCSEEECTTCTT
T ss_pred -----CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-H--------hhCCCCCEEeCCCCCc
Confidence 3444444444 21111 122255667 88888888874 321 2111 1 236788888888887
Q ss_pred C--CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCccEeeccccccccccCCCC-cCC-CCccE
Q 038165 586 G--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVYPNP-LPF-PKLKK 661 (731)
Q Consensus 586 ~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~-~~l-p~L~~ 661 (731)
. ..+..+..+++|++|+|++|..+.... ...+..+++|++|++.+| ++... ..+ .+|+.
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------------~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~ 297 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPET------------LLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPH 297 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGG------------GGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTT
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHHH------------HHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcc
Confidence 3 456677888888888888886332210 013567888888888887 22211 112 23555
Q ss_pred EeeccccCCCCCC
Q 038165 662 IEVRECRQLKKLP 674 (731)
Q Consensus 662 L~l~~C~~L~~lP 674 (731)
|++ +|++++...
T Consensus 298 L~l-~~n~l~~~~ 309 (336)
T 2ast_B 298 LQI-NCSHFTTIA 309 (336)
T ss_dssp SEE-SCCCSCCTT
T ss_pred eEE-ecccCcccc
Confidence 556 455565543
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=4.2e-15 Score=166.12 Aligned_cols=34 Identities=26% Similarity=0.184 Sum_probs=15.7
Q ss_pred cCCccEEEEeccCCCCCchhhccCCccEEeeecc
Q 038165 573 FRSLNTVVLRSCRGKDLTWLVFVQNLKVLYIGFC 606 (731)
Q Consensus 573 l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~ 606 (731)
+++|+.|+|++|....++.+..+++|+.|+|++|
T Consensus 174 l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 4444444444444422334444555555555444
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=1.6e-14 Score=143.90 Aligned_cols=104 Identities=20% Similarity=0.281 Sum_probs=74.4
Q ss_pred CeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCEEeccCCCCCCcchH-HhcCCcCcEeec
Q 038165 358 RLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHHLDLSSADITGLPQE-LKALEKLRYLNL 435 (731)
Q Consensus 358 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 435 (731)
..+.++++++.+..+|..+ .++|++|++++| .+..++ ..++.+++|++|++++|.++.++.. +..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI---PADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC---CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCC---CCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567777777777777653 257788888887 555544 4577778888888888877776544 677788888888
Q ss_pred ccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 436 EYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 436 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
++| .++.+|...+..+++|++|++++|.+.
T Consensus 91 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 91 ANN-QLASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp TTS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCC-cccccChhHhcccCCCCEEEcCCCcCC
Confidence 877 566777665777788888888777655
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=153.94 Aligned_cols=221 Identities=15% Similarity=0.085 Sum_probs=130.1
Q ss_pred ccceEEEeecCCccc-----CCCCCCCCCeeEEEcccCCccccChhhh--cCCCCccEEEcCCCCCCCc-cc----cccc
Q 038165 335 EGAKRVSLMGNGIES-----LSEIPTCPRLVTLLVDENPIVEITDGFF--QSMSSLRVLSLSENFHLST-LP----SGIS 402 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~-----l~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~L~~~~~~~~-lP----~~i~ 402 (731)
..++.+.+....+.. +.....+++|+.|++++|.+....+..+ ..+++|++|++++| .+.. .| ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhh
Confidence 356677776665532 1222344568888888888765544434 77888888888888 4443 23 3345
Q ss_pred CCcCCCEEeccCCCCCCcc-hHHhcCCcCcEeeccccccccc--ccc-cccCCCCCCcEEEeeCcccCCCchhhhhhhhc
Q 038165 403 SLVSLHHLDLSSADITGLP-QELKALEKLRYLNLEYAFNLSI--IPH-QLISGFSNLEVLRLRGCGCCSVTEEEEANVLC 478 (731)
Q Consensus 403 ~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~--lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 478 (731)
.+++|++|++++|.+..+| ..++.+++|++|++++|...+. ++. ..++.+++|++|++++|.+...
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l---------- 212 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP---------- 212 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----------
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----------
Confidence 6788888888888887765 4677888888888888843321 322 2246788888888888866521
Q ss_pred CCcccchhh-hccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCccccccccc---CCccEEeccCCCc
Q 038165 479 ADAEPLMKE-LLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYM---ENLQELDLEYCNL 554 (731)
Q Consensus 479 ~~~~~~i~~-l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~ 554 (731)
+..... +..+ +.|+.|++++|......+..+..+ ++|++|++++|.+
T Consensus 213 ---~~~~~~l~~~l--------------------------~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 213 ---TGVCAALAAAG--------------------------VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp ---HHHHHHHHHHT--------------------------CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred ---HHHHHHHHhcC--------------------------CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence 010000 0111 133444444444333323223332 5666777766666
Q ss_pred cceeecCccccccccccccCCccEEEEeccCCCCCchhhccCCccEEeeecc
Q 038165 555 EEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKVLYIGFC 606 (731)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~ 606 (731)
..+|... +++|+.|+|++|....++.+..+++|+.|+|+++
T Consensus 264 ~~lp~~~-----------~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 264 EQVPKGL-----------PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CSCCSCC-----------CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred Cchhhhh-----------cCCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 5543222 3566666666666633233556666666666655
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=4.8e-16 Score=165.74 Aligned_cols=110 Identities=16% Similarity=0.119 Sum_probs=72.7
Q ss_pred CCCCCeeEEEcccCCccccChh----hhcCCCCccEEEcCCCCCCC----cccccc-------cCCcCCCEEeccCCCCC
Q 038165 354 PTCPRLVTLLVDENPIVEITDG----FFQSMSSLRVLSLSENFHLS----TLPSGI-------SSLVSLHHLDLSSADIT 418 (731)
Q Consensus 354 ~~~~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~L~~~~~~~----~lP~~i-------~~l~~L~~L~L~~~~l~ 418 (731)
..+++|++|++++|.+...... .+..+++|++|+|++| .+. .+|..+ ..+++|++|+|++|.+.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 5567788888888776543222 2556778888888876 333 334443 57788888888888777
Q ss_pred C-----cchHHhcCCcCcEeeccccccccc-----ccccccCCC---------CCCcEEEeeCcccC
Q 038165 419 G-----LPQELKALEKLRYLNLEYAFNLSI-----IPHQLISGF---------SNLEVLRLRGCGCC 466 (731)
Q Consensus 419 ~-----lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~~i~~l---------~~L~~L~l~~~~~~ 466 (731)
. +|..+.++++|++|++++|. ++. ++.. +..+ ++|++|++++|.+.
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHH-HHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHH-HHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 6 67777888888888888873 332 2221 2233 77888888887664
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=6.8e-15 Score=164.44 Aligned_cols=178 Identities=23% Similarity=0.326 Sum_probs=138.6
Q ss_pred ccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCC
Q 038165 329 PKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLH 408 (731)
Q Consensus 329 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~ 408 (731)
.....+..++.|++.++.+..++.+..+++|+.|++++|.+..+++ +..+++|++|+|++| .+..+| .++.+++|+
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLK 112 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCC
T ss_pred cchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCC
Confidence 3445667888999999999999888999999999999999888877 788999999999999 788877 788999999
Q ss_pred EEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhh
Q 038165 409 HLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKEL 488 (731)
Q Consensus 409 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l 488 (731)
+|+|++|.+..+| .+..+++|+.|+|++| .+..++. ++.+++|++|++++|.+.+. ++ +
T Consensus 113 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~~-------------~~----l 171 (605)
T 1m9s_A 113 SLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI-------------VP----L 171 (605)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCCC-------------GG----G
T ss_pred EEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCCc-------------hh----h
Confidence 9999999998875 5889999999999999 6777754 88999999999999877632 11 3
Q ss_pred ccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceee
Q 038165 489 LGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKI 559 (731)
Q Consensus 489 ~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 559 (731)
..+. +|+.|++++|..... ..+..+++|+.|++++|.+...|.
T Consensus 172 ~~l~--------------------------~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 172 AGLT--------------------------KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp TTCT--------------------------TCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred ccCC--------------------------CCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 3333 444555555543222 346777888888888877766443
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=3.4e-16 Score=163.65 Aligned_cols=239 Identities=18% Similarity=0.147 Sum_probs=167.4
Q ss_pred CCccEEEcCCCCCCCcccccccCC--cCCCEEeccCCCCCCcchHHhcCCcCcEeeccccccccc--ccccccCCCCCCc
Q 038165 381 SSLRVLSLSENFHLSTLPSGISSL--VSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSI--IPHQLISGFSNLE 456 (731)
Q Consensus 381 ~~L~~L~L~~~~~~~~lP~~i~~l--~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~l~~L~ 456 (731)
..++.++++++ .+. |..+..+ .++++|+++++.+...+..+.++++|++|++++|. +.. +|.. +..+++|+
T Consensus 47 ~~~~~l~l~~~-~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~-~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGI-LSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHH-HTTBCCCS
T ss_pred hhheeeccccc-cCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHH-HhhCCCCC
Confidence 45889999988 554 5666777 89999999999998877778889999999999995 443 5654 88999999
Q ss_pred EEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCc--c
Q 038165 457 VLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPF--N 534 (731)
Q Consensus 457 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~ 534 (731)
+|++++|.+. ......+..++ +|+.|++++|..... .
T Consensus 122 ~L~L~~~~l~---------------~~~~~~l~~~~--------------------------~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 122 NLSLEGLRLS---------------DPIVNTLAKNS--------------------------NLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp EEECTTCBCC---------------HHHHHHHTTCT--------------------------TCSEEECTTCBSCCHHHH
T ss_pred EEeCcCcccC---------------HHHHHHHhcCC--------------------------CCCEEECCCCCCCCHHHH
Confidence 9999998655 12233333343 455566666532221 2
Q ss_pred cccccccCCccEEeccCC-Cccce-eecCccccccccccccC-CccEEEEeccC--C---CCCchhhccCCccEEeeecc
Q 038165 535 VLHLAYMENLQELDLEYC-NLEEM-KIDCPEEVKKLFRNGFR-SLNTVVLRSCR--G---KDLTWLVFVQNLKVLYIGFC 606 (731)
Q Consensus 535 ~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~~~~~~l~-~L~~L~L~~c~--~---~~~~~l~~l~~L~~L~L~~~ 606 (731)
+..+..+++|++|++++| .+... ..... ..++ +|++|++++|. . ..+..+..+++|+.|+|++|
T Consensus 161 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--------~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAV--------AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp HHHHHHCTTCCEEECCCCTTCCHHHHHHHH--------HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred HHHHhcCCCCCEEcCCCCCCcChHHHHHHH--------HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 233778899999999999 66541 11111 2378 99999999995 3 22455678999999999999
Q ss_pred cccccccccccccccccccCCCCccCcCccEeeccccccccccC-CCCcCCCCccEEeeccccCCCCCCCCC-CCC-C-C
Q 038165 607 GDMEEIVSVDKLRDISGIIGSERNFFAQLESLSVWRGINLKSVY-PNPLPFPKLKKIEVRECRQLKKLPLNS-SSA-K-E 682 (731)
Q Consensus 607 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~-~~~~~lp~L~~L~l~~C~~L~~lP~~~-~~~-~-L 682 (731)
..+.... +..+..+++|++|++++|..+..-. .....+|+|++|++++| +|... ... . +
T Consensus 233 ~~l~~~~------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l 295 (336)
T 2ast_B 233 VMLKNDC------------FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEAL 295 (336)
T ss_dssp TTCCGGG------------GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHS
T ss_pred CcCCHHH------------HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhC
Confidence 7554321 2356788999999999997443221 13456899999999999 44321 111 2 6
Q ss_pred cceEEecc
Q 038165 683 RRVVIEGS 690 (731)
Q Consensus 683 ~~l~i~~~ 690 (731)
+.+++.++
T Consensus 296 ~~L~l~~n 303 (336)
T 2ast_B 296 PHLQINCS 303 (336)
T ss_dssp TTSEESCC
T ss_pred cceEEecc
Confidence 66666543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.8e-14 Score=139.12 Aligned_cols=126 Identities=27% Similarity=0.415 Sum_probs=94.3
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccccc-ccCCcCCCEEeccCCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSG-ISSLVSLHHLDLSSAD 416 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~l~~L~~L~L~~~~ 416 (731)
+.+...++.+..+|.. ..++|+.|++++|.+..+++..|..+++|++|++++| .+..+|.. +..+++|++|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 3456666666666532 2467888888888888888777788888888888888 67676654 5778888888888888
Q ss_pred CCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 417 ITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 417 l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc
Confidence 8887765 577888888888888 567777765777888888888887655
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=9.2e-16 Score=163.56 Aligned_cols=94 Identities=22% Similarity=0.209 Sum_probs=73.8
Q ss_pred ccccChhhhcCCCCccEEEcCCCCCCCc-----ccccccCCcCCCEEeccCCCCCC----cchHH-------hcCCcCcE
Q 038165 369 IVEITDGFFQSMSSLRVLSLSENFHLST-----LPSGISSLVSLHHLDLSSADITG----LPQEL-------KALEKLRY 432 (731)
Q Consensus 369 l~~~~~~~~~~l~~L~~L~L~~~~~~~~-----lP~~i~~l~~L~~L~L~~~~l~~----lp~~i-------~~L~~L~~ 432 (731)
+..++.. +..+++|++|+|++| .+.. ++..+..+++|++|+|++|.+.. +|..+ .++++|++
T Consensus 21 ~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 21 EKSVFAV-LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHTTSHH-HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHH-HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 4445544 778899999999999 5553 44557789999999999986553 45555 68899999
Q ss_pred eeccccccccc-----ccccccCCCCCCcEEEeeCcccC
Q 038165 433 LNLEYAFNLSI-----IPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 433 L~L~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
|++++| .++. +|.. +..+++|++|++++|.+.
T Consensus 99 L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 99 VRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp EECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCH
T ss_pred EECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCC
Confidence 999999 4444 6665 788999999999999775
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=5.3e-16 Score=175.65 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=44.9
Q ss_pred cccceEEEeecCCccc-----CCCC-CCCCCeeEEEcccCCccccC----hhhhcCCCCccEEEcCCCCCCCcccccccC
Q 038165 334 WEGAKRVSLMGNGIES-----LSEI-PTCPRLVTLLVDENPIVEIT----DGFFQSMSSLRVLSLSENFHLSTLPSGISS 403 (731)
Q Consensus 334 ~~~l~~l~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~ 403 (731)
.++++.+++.+|.+.. ++.+ ..+++|++|++++|. ..+. ...+..+++|++|++++|..+..+|..+..
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 4566677776665433 2222 356677777777664 1222 122334577777777766444556666666
Q ss_pred CcCCCEEeccC
Q 038165 404 LVSLHHLDLSS 414 (731)
Q Consensus 404 l~~L~~L~L~~ 414 (731)
+++|++|++.+
T Consensus 234 ~~~L~~L~l~~ 244 (594)
T 2p1m_B 234 APQLEELGTGG 244 (594)
T ss_dssp CTTCSEEECSB
T ss_pred CCcceEccccc
Confidence 66666666443
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=6.4e-15 Score=155.38 Aligned_cols=258 Identities=17% Similarity=0.138 Sum_probs=151.2
Q ss_pred EEeecCCccc-CCCC-CCCCCeeEEEcccCCccccCh----hhhcCCC-CccEEEcCCCCCCCcc-cccccCC-----cC
Q 038165 340 VSLMGNGIES-LSEI-PTCPRLVTLLVDENPIVEITD----GFFQSMS-SLRVLSLSENFHLSTL-PSGISSL-----VS 406 (731)
Q Consensus 340 l~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~L~~~~~~~~l-P~~i~~l-----~~ 406 (731)
..++.+.+.. ++.+ ...++|++|++++|.+...+. ..+..++ +|++|+|++| .+... +..++.+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCC
Confidence 3455555553 2333 344558888888888877776 5577777 7888888888 55443 5555554 78
Q ss_pred CCEEeccCCCCCCcch-H----HhcC-CcCcEeecccccccccccccc----cCC-CCCCcEEEeeCcccCCCchhhhhh
Q 038165 407 LHHLDLSSADITGLPQ-E----LKAL-EKLRYLNLEYAFNLSIIPHQL----ISG-FSNLEVLRLRGCGCCSVTEEEEAN 475 (731)
Q Consensus 407 L~~L~L~~~~l~~lp~-~----i~~L-~~L~~L~L~~~~~l~~lp~~~----i~~-l~~L~~L~l~~~~~~~~~~~~~~~ 475 (731)
|++|+|++|.++..+. . +..+ ++|++|++++| .++..+... +.. .++|++|++++|.+...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------- 153 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK------- 153 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-------
Confidence 8888888888776433 2 4444 78888888888 455555422 233 35888888888866521
Q ss_pred hhcCCcccchhhhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCccccc----cccc-CCccEEecc
Q 038165 476 VLCADAEPLMKELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLH----LAYM-ENLQELDLE 550 (731)
Q Consensus 476 ~~~~~~~~~i~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~ 550 (731)
....+. ..+.. ....|+.|++++|......+.. +..+ ++|++|+++
T Consensus 154 --------~~~~l~------------------~~l~~---~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 154 --------SSDELI------------------QILAA---IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp --------CHHHHH------------------HHHHT---SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred --------HHHHHH------------------HHHhc---CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 111110 00000 1126667777776533333322 3344 589999999
Q ss_pred CCCccceeecCccccccccccccCCccEEEEeccCC-CC-C----chhhccCCccEEeeecccccccccccccccccccc
Q 038165 551 YCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KD-L----TWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGI 624 (731)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~-~----~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~ 624 (731)
+|.+.......... ......++|+.|+|++|.. .. + ..+..+++|+.|+|++|. +..+.. . .+..+
T Consensus 205 ~N~i~~~~~~~l~~---~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~-~---~~~~l 276 (362)
T 3goz_A 205 ANLLGLKSYAELAY---IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSK-E---QCKAL 276 (362)
T ss_dssp TSCGGGSCHHHHHH---HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCH-H---HHHHH
T ss_pred CCCCChhHHHHHHH---HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCH-H---HHHHH
Confidence 98876621111000 0001135899999999887 22 2 123567889999998884 111110 0 00011
Q ss_pred cCCCCccCcCccEeeccccc
Q 038165 625 IGSERNFFAQLESLSVWRGI 644 (731)
Q Consensus 625 ~~~~~~~~~~L~~L~L~~~~ 644 (731)
+..+..+++|+.|++++++
T Consensus 277 -~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 277 -GAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp -HTTSTTCCEEEEECTTSCB
T ss_pred -HHHhccCCceEEEecCCCc
Confidence 3456678888888888754
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=1.6e-13 Score=151.55 Aligned_cols=182 Identities=24% Similarity=0.293 Sum_probs=120.6
Q ss_pred cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCC
Q 038165 336 GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSA 415 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~ 415 (731)
+++.+++.+|.+..+|... +++|++|++++|.++.+| ..+++|++|++++| .+..+|. ++. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 6778888888877776532 377888888888877777 24677888888888 6777776 655 7888888888
Q ss_pred CCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCc
Q 038165 416 DITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLN 495 (731)
Q Consensus 416 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~ 495 (731)
.++.+|. .+++|++|++++| .++.+|. .+++|++|++++|.+.++ +.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~l-------------p~------------ 177 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTFL-------------PE------------ 177 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC-------------CC------------
T ss_pred cCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCCc-------------ch------------
Confidence 8887776 6778888888887 5666775 467778888877755421 00
Q ss_pred EEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccceeecCccccccccccccCC
Q 038165 496 VLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRS 575 (731)
Q Consensus 496 ~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 575 (731)
+. ++|+.|++++|.+..+|. +... + ....+.
T Consensus 178 ------------------------------------------l~--~~L~~L~Ls~N~L~~lp~-~~~~---L-~~~~~~ 208 (571)
T 3cvr_A 178 ------------------------------------------LP--ESLEALDVSTNLLESLPA-VPVR---N-HHSEET 208 (571)
T ss_dssp ------------------------------------------CC--TTCCEEECCSSCCSSCCC-CC------------C
T ss_pred ------------------------------------------hh--CCCCEEECcCCCCCchhh-HHHh---h-hccccc
Confidence 11 456666666666655443 2100 0 001223
Q ss_pred ccEEEEeccCC-CCCchhhccCCccEEeeecccc
Q 038165 576 LNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGD 608 (731)
Q Consensus 576 L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~ 608 (731)
|+.|+|++|.. ..+..+..+++|+.|+|++|.-
T Consensus 209 L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 209 EIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 37778877777 6666677788888888877743
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.1e-13 Score=135.50 Aligned_cols=143 Identities=28% Similarity=0.359 Sum_probs=119.6
Q ss_pred cCCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc
Q 038165 321 AGVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP 398 (731)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP 398 (731)
.+..+..+|... ..+++.+++++|.+..+. .+..+++|++|++++|.+..++...|..+++|++|+|++| .+..+|
T Consensus 27 ~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~ 104 (229)
T 3e6j_A 27 RSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLP 104 (229)
T ss_dssp TTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred cCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccC
Confidence 334445555422 268999999999998874 3688999999999999999998888889999999999999 777776
Q ss_pred cc-ccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 399 SG-ISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 399 ~~-i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
.. +..+++|++|+|++|+++.+|..+..+++|++|++++| .++.+|...+..+++|++|++.+|.+.
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 54 68899999999999999999999999999999999998 778888776889999999999998765
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=147.02 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=82.7
Q ss_pred CCCeeEEEcccCCccc-----cChhhhcCCCCccEEEcCCCCCCCcccccc--cCCcCCCEEeccCCCCCCc-c----hH
Q 038165 356 CPRLVTLLVDENPIVE-----ITDGFFQSMSSLRVLSLSENFHLSTLPSGI--SSLVSLHHLDLSSADITGL-P----QE 423 (731)
Q Consensus 356 ~~~L~~L~l~~~~l~~-----~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i--~~l~~L~~L~L~~~~l~~l-p----~~ 423 (731)
...++.+.+.++.+.. +.. +..+++|++|++++|......|..+ +.+++|++|++++|.+... | ..
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 3456778888776532 111 2235679999999994455778777 8999999999999998862 2 34
Q ss_pred HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 424 LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 424 i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
+..+++|++|++++| .+..+|...++.+++|++|++++|.+.
T Consensus 141 ~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 141 QWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp TTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred hhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCc
Confidence 567999999999999 567777655899999999999998654
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=5.1e-14 Score=134.54 Aligned_cols=131 Identities=17% Similarity=0.258 Sum_probs=114.6
Q ss_pred cccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC-cccccccCCcCCCEE
Q 038165 332 EEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS-TLPSGISSLVSLHHL 410 (731)
Q Consensus 332 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~lP~~i~~l~~L~~L 410 (731)
..+++++.+++.++.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+. ..|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 4567899999999999998888999999999999998766653 888999999999999 555 478889999999999
Q ss_pred eccCCCCCC-cchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCC
Q 038165 411 DLSSADITG-LPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCS 467 (731)
Q Consensus 411 ~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 467 (731)
++++|.++. .|..+..+++|++|++++|..++.+|. +..+++|++|++++|.+.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC
Confidence 999999986 778899999999999999965888885 8999999999999998763
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=1.6e-13 Score=133.52 Aligned_cols=126 Identities=26% Similarity=0.375 Sum_probs=90.6
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccCCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSSAD 416 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~~~ 416 (731)
+.+++.++.+..+|... .++|+.|++++|.+..+++..|..+++|++|+|++| .+..+ |..|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence 35666667776665432 267788888888877777766777888888888887 55554 6677778888888888888
Q ss_pred CCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 417 ITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 417 l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
++.+|.. +..+++|++|++++| .++.++...+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 7777765 466778888888777 566665555777777777777777655
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=3.8e-13 Score=129.77 Aligned_cols=143 Identities=24% Similarity=0.389 Sum_probs=123.0
Q ss_pred CccccCccccccccceEEEeecCCcccCCC--CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccccc
Q 038165 323 VKLTEAPKIEEWEGAKRVSLMGNGIESLSE--IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSG 400 (731)
Q Consensus 323 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~ 400 (731)
.....+|.. -.++++.+++.+|.+..++. +..+++|++|++++|.+..+++..|..+++|++|++++| .+..+|..
T Consensus 17 ~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 94 (208)
T 2o6s_A 17 QGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNG 94 (208)
T ss_dssp SCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHh
Confidence 344444432 23589999999999998865 689999999999999999999888899999999999999 78787765
Q ss_pred -ccCCcCCCEEeccCCCCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCC
Q 038165 401 -ISSLVSLHHLDLSSADITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 401 -i~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
++.+++|++|++++|.++.+|.. +.++++|++|++++| .++.+|...+..+++|++|++++|.+...
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecC
Confidence 68999999999999999998876 688999999999999 67888887789999999999999977643
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=2.5e-13 Score=132.04 Aligned_cols=146 Identities=25% Similarity=0.315 Sum_probs=125.5
Q ss_pred EEEcCCccccCccccccccceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC
Q 038165 318 LVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS 395 (731)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 395 (731)
+...+..+..+|..- .+.++.+++.+|.+..++ .+..+++|+.|++++|.+..+.+..|..+++|++|+|++| .+.
T Consensus 16 v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~ 93 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KIT 93 (220)
T ss_dssp EECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCC
T ss_pred EEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCC
Confidence 333444555665422 268999999999999886 5789999999999999999997777999999999999999 888
Q ss_pred ccccc-ccCCcCCCEEeccCCCCCCc-chHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 396 TLPSG-ISSLVSLHHLDLSSADITGL-PQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 396 ~lP~~-i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
.+|.. |..+++|++|+|++|.++.+ |..+..+++|++|++++| .++.+|...+..+++|++|++++|.+.
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88876 58899999999999999997 556889999999999999 788888877899999999999998765
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=2e-13 Score=130.39 Aligned_cols=146 Identities=20% Similarity=0.256 Sum_probs=125.0
Q ss_pred eEEEEcCCccccCccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC
Q 038165 316 NFLVRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS 395 (731)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 395 (731)
..+...+..+..++.+..+++++.+++.+|.+..++.+..+++|++|++++|.+.......+..+++|++|++++| .+.
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~ 125 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHD 125 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCB
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccC
Confidence 3455556666777778888999999999999999999999999999999999988644444889999999999999 555
Q ss_pred -cccccccCCcCCCEEeccCCC-CCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 396 -TLPSGISSLVSLHHLDLSSAD-ITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 396 -~lP~~i~~l~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
..|..++.+++|++|++++|. +..+| .+..+++|++|++++| .++.++. +..+++|++|++++|.+.
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence 578889999999999999997 99998 7999999999999999 6788874 899999999999998764
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=2.6e-14 Score=143.14 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=56.5
Q ss_pred EEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCC
Q 038165 340 VSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITG 419 (731)
Q Consensus 340 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~ 419 (731)
+.+..+.+..++.+..+++|+.|++++|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++|+++.
T Consensus 24 l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 24 QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSC
T ss_pred HHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCC
Confidence 33444444444444444555555555555444441 444555555555555 4444443 5555555555555555555
Q ss_pred cchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCccc
Q 038165 420 LPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGC 465 (731)
Q Consensus 420 lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 465 (731)
+|.... ++|++|++++| .++.+|. ++.+++|++|++++|.+
T Consensus 100 l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 100 LNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKL 140 (263)
T ss_dssp CTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCC
T ss_pred cCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcC
Confidence 443222 45555555555 3444443 44555555555555443
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=3.3e-13 Score=149.07 Aligned_cols=76 Identities=8% Similarity=-0.111 Sum_probs=53.7
Q ss_pred cCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC-CCCchhhccCCc-------cEEeeecccccccc
Q 038165 541 MENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNL-------KVLYIGFCGDMEEI 612 (731)
Q Consensus 541 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L-------~~L~L~~~~~l~~l 612 (731)
+++|+.|++++|.+..+|. + .++|+.|+|++|.. ..+. +.. +| +.|+|++| .++.+
T Consensus 159 l~~L~~L~Ls~N~L~~lp~-l-----------~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~l 222 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTFLPE-L-----------PESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCREN-RITHI 222 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-C-----------CTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSS-CCCCC
T ss_pred CCCcCEEECCCCCCCCcch-h-----------hCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCC-cceec
Confidence 4678889999988777544 2 27899999999988 4444 443 66 89999887 44444
Q ss_pred cccccccccccccCCCCccCcCccEeecccccc
Q 038165 613 VSVDKLRDISGIIGSERNFFAQLESLSVWRGIN 645 (731)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 645 (731)
|..+..+++|+.|+|++++-
T Consensus 223 -------------p~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 223 -------------PENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -------------CGGGGGSCTTEEEECCSSSC
T ss_pred -------------CHHHhcCCCCCEEEeeCCcC
Confidence 55666788999999988653
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=4.1e-13 Score=130.49 Aligned_cols=126 Identities=17% Similarity=0.322 Sum_probs=88.5
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccC-hhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEEeccCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEIT-DGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHLDLSSA 415 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L~L~~~ 415 (731)
+.++++++.+..+|.. -.+.++.|++++|.+..++ ..+|..+++|++|+|++| .+..+|. .|+.+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 3677777777776642 2345677888888777763 345677788888888877 6666654 6777788888888888
Q ss_pred CCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 416 DITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 416 ~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
.++.+|.. +..+++|++|++++| .++.+++..+..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC
Confidence 77776654 677778888888777 556664444777777777777777655
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=3.7e-13 Score=134.76 Aligned_cols=132 Identities=25% Similarity=0.322 Sum_probs=117.9
Q ss_pred ccCccccccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCc
Q 038165 326 TEAPKIEEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLV 405 (731)
Q Consensus 326 ~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~ 405 (731)
..++....+++++.+++.+|.+..++.+..+++|+.|++++|.+..+++ +..+++|++|++++| .+..+|... . .
T Consensus 32 ~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~-~-~ 106 (263)
T 1xeu_A 32 TDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIP-S-A 106 (263)
T ss_dssp TSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCC-C-S
T ss_pred ccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCccc-c-C
Confidence 3444566778999999999999999988999999999999999998887 889999999999999 888888544 3 8
Q ss_pred CCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 406 SLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 406 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
+|++|++++|+++.+| .+..+++|++|++++| .++.+|. ++.+++|++|++++|.+.
T Consensus 107 ~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCC
T ss_pred cccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCc
Confidence 9999999999999987 5999999999999999 6788874 899999999999999876
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=2.1e-14 Score=151.37 Aligned_cols=229 Identities=17% Similarity=0.163 Sum_probs=154.0
Q ss_pred ccceEEEeecCCcccCC------CCCCCC-CeeEEEcccCCccccChhhhcCC-----CCccEEEcCCCCCCCcc-ccc-
Q 038165 335 EGAKRVSLMGNGIESLS------EIPTCP-RLVTLLVDENPIVEITDGFFQSM-----SSLRVLSLSENFHLSTL-PSG- 400 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~l~------~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~L~~~~~~~~l-P~~- 400 (731)
++++.+++++|.+...+ .+..++ +|++|++++|.+.......+..+ ++|++|+|++| .+... +..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHH
Confidence 45999999999998764 356777 99999999999888766556554 99999999999 66644 333
Q ss_pred ---ccCC-cCCCEEeccCCCCCCcchH-----Hhc-CCcCcEeecccccccc-----cccccccCCCC-CCcEEEeeCcc
Q 038165 401 ---ISSL-VSLHHLDLSSADITGLPQE-----LKA-LEKLRYLNLEYAFNLS-----IIPHQLISGFS-NLEVLRLRGCG 464 (731)
Q Consensus 401 ---i~~l-~~L~~L~L~~~~l~~lp~~-----i~~-L~~L~~L~L~~~~~l~-----~lp~~~i~~l~-~L~~L~l~~~~ 464 (731)
+..+ ++|++|++++|.++..+.. +.. .++|++|++++| .++ .++.. +..++ +|++|++++|.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQI-LAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHH-HHTSCTTCCEEECTTSC
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHH-HhcCCccccEeeecCCC
Confidence 4444 8999999999999886542 333 369999999999 455 34443 45565 99999999998
Q ss_pred cCCCchhhhhhhhcCCcccchh-hhccCCCCcEEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcc----ccccc
Q 038165 465 CCSVTEEEEANVLCADAEPLMK-ELLGLKRLNVLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFN----VLHLA 539 (731)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~i~-~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~ 539 (731)
+.+.. +..+. .+.... +.|+.|++++|...... +..+.
T Consensus 179 l~~~~------------~~~l~~~l~~~~-------------------------~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 179 LASKN------------CAELAKFLASIP-------------------------ASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp GGGSC------------HHHHHHHHHTSC-------------------------TTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred Cchhh------------HHHHHHHHHhCC-------------------------CCCCEEECCCCCCChhHHHHHHHHHh
Confidence 76321 11111 122221 24555555555422211 11233
Q ss_pred c-cCCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC---------CCCchhhccCCccEEeeeccc
Q 038165 540 Y-MENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG---------KDLTWLVFVQNLKVLYIGFCG 607 (731)
Q Consensus 540 ~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---------~~~~~l~~l~~L~~L~L~~~~ 607 (731)
. .++|++|++++|.+...+...+. .....+++|+.|++++|.. .....+..+++|+.|+++++.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~----~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLK----LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHH----HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cCCCCceEEECcCCCCCcHHHHHHH----HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3 35899999999988664331111 0112378899999999983 112244577888999998875
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=5.8e-13 Score=130.39 Aligned_cols=125 Identities=27% Similarity=0.365 Sum_probs=90.6
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccccc-ccCCcCCCEEeccCCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSG-ISSLVSLHHLDLSSAD 416 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~l~~L~~L~L~~~~ 416 (731)
..++..++.+..+|... .++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. +..+++|++|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc
Confidence 35666777777766532 377888888888877776666777888888888887 66776643 5777888888888887
Q ss_pred CCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 417 ITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 417 l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
++.+|.. +..+++|++|++++| .++.+|.. +..+++|++|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCC
T ss_pred CCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCC
Confidence 7777655 467778888888777 56677766 677777777777777554
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=5.1e-13 Score=129.87 Aligned_cols=145 Identities=22% Similarity=0.272 Sum_probs=122.2
Q ss_pred EEcCCccccCccccccccceEEEeecCCcccCCC---CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCC
Q 038165 319 VRAGVKLTEAPKIEEWEGAKRVSLMGNGIESLSE---IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLS 395 (731)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 395 (731)
...+..+..+|.. -...++.+++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++| .+.
T Consensus 17 ~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~ 94 (220)
T 2v70_A 17 DCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLE 94 (220)
T ss_dssp ECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred EeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccC
Confidence 3344445555542 23467899999999998743 688999999999999999999888999999999999999 777
Q ss_pred cccc-cccCCcCCCEEeccCCCCCCc-chHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 396 TLPS-GISSLVSLHHLDLSSADITGL-PQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 396 ~lP~-~i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
.+|. .|..+++|++|+|++|+++.+ |..+..+++|++|++++| .++.+++..+..+++|++|++++|.+.
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 7665 489999999999999999997 667899999999999999 677775555999999999999999776
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=7.6e-15 Score=166.10 Aligned_cols=300 Identities=15% Similarity=0.154 Sum_probs=174.9
Q ss_pred ccccceEEEeecCC--cc--cCCCC-CCCCCeeEEEcccCC-ccccChhhhcCCCCccEEEcCCCC------CCCccccc
Q 038165 333 EWEGAKRVSLMGNG--IE--SLSEI-PTCPRLVTLLVDENP-IVEITDGFFQSMSSLRVLSLSENF------HLSTLPSG 400 (731)
Q Consensus 333 ~~~~l~~l~l~~~~--~~--~l~~~-~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~~~------~~~~lP~~ 400 (731)
..++++.+++.++. +. .+..+ ..+++|++|++.+|. +..++ ..+..+++|++|++.++. .+..++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 45689999999886 11 12221 457999999999984 55543 447889999999977662 12345667
Q ss_pred ccCCcCCCEE-eccCCCCCCcchHHhcCCcCcEeeccccccccc-ccccccCCCCCCcEEEeeCcccCCCchhhhhhhhc
Q 038165 401 ISSLVSLHHL-DLSSADITGLPQELKALEKLRYLNLEYAFNLSI-IPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLC 478 (731)
Q Consensus 401 i~~l~~L~~L-~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 478 (731)
+.++++|+.| .+.+.....+|..+..+++|++|++++|. ++. ....++.++++|++|++.+| +.
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~------------ 326 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IE------------ 326 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GH------------
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cC------------
Confidence 7888888888 55555545577767778888889888885 432 12223567888888888887 22
Q ss_pred CCcccchhhh-ccCCCCcEEEEEe-----------echhHHHhhhCCchhhccceEEEEeecCCCCccccccc-ccCCcc
Q 038165 479 ADAEPLMKEL-LGLKRLNVLSWTF-----------RSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLA-YMENLQ 545 (731)
Q Consensus 479 ~~~~~~i~~l-~~L~~L~~l~~~~-----------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~ 545 (731)
...+..+ ..+++|+.+++.. .+......+ ....++|+.|.+..+.........+. .+++|+
T Consensus 327 ---~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l---~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~ 400 (594)
T 2p1m_B 327 ---DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV---SMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400 (594)
T ss_dssp ---HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH---HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC
T ss_pred ---HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH---HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc
Confidence 1112222 2355666666522 111112221 12235777776554443332223333 577888
Q ss_pred EEecc--C---C-CccceeecCccccccccccccCCccEEEEeccCC-CCCchhhc-cCCccEEeeeccccccccccccc
Q 038165 546 ELDLE--Y---C-NLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVF-VQNLKVLYIGFCGDMEEIVSVDK 617 (731)
Q Consensus 546 ~L~l~--~---~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~-l~~L~~L~L~~~~~l~~l~~~~~ 617 (731)
+|+++ + | .+...+.+. .. ......+++|+.|+++++-. ..+..++. +++|+.|+|++|. +.....
T Consensus 401 ~L~L~~~~~~~~~~l~~~~~~~--~~-~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~--- 473 (594)
T 2p1m_B 401 RFRLCIIEPKAPDYLTLEPLDI--GF-GAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM--- 473 (594)
T ss_dssp EEEEEESSTTCCCTTTCCCTHH--HH-HHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH---
T ss_pred eeEeecccCCCcccccCCchhh--HH-HHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHH---
Confidence 88888 2 2 222111100 00 00013367888888866222 44445554 7888888888775 222110
Q ss_pred ccccccccCCCCccCcCccEeeccccccccccC--CCCcCCCCccEEeeccccC
Q 038165 618 LRDISGIIGSERNFFAQLESLSVWRGINLKSVY--PNPLPFPKLKKIEVRECRQ 669 (731)
Q Consensus 618 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~--~~~~~lp~L~~L~l~~C~~ 669 (731)
+.....+++|++|+|++|+. .... .....+++|++|++++|+.
T Consensus 474 --------~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 --------HHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp --------HHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred --------HHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 11124578888888888764 2211 1233468888888888865
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=4.7e-13 Score=140.90 Aligned_cols=127 Identities=19% Similarity=0.246 Sum_probs=93.5
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhc-CCCCccEEEcCCCCCCCccc-ccccCCcCCCEEeccCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQ-SMSSLRVLSLSENFHLSTLP-SGISSLVSLHHLDLSSA 415 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~L~L~~~ 415 (731)
+.+++.++.+..+|.. -.+.++.|++++|.++.++...|. .+++|++|+|++| .+..+| ..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 4567777777776642 234577888888888877777666 7888888888888 666665 45778888888888888
Q ss_pred CCCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCC
Q 038165 416 DITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCS 467 (731)
Q Consensus 416 ~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 467 (731)
+++.+|. .+..+++|++|+|++| .+..++...+.++++|++|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCe
Confidence 8887765 3677888888888888 5666655557788888888888876664
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=4.6e-13 Score=140.99 Aligned_cols=102 Identities=27% Similarity=0.351 Sum_probs=84.7
Q ss_pred eEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccccc-cc-CCcCCCEEeccCCCCCCcch-HHhcCCcCcEeecc
Q 038165 360 VTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSG-IS-SLVSLHHLDLSSADITGLPQ-ELKALEKLRYLNLE 436 (731)
Q Consensus 360 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~-i~-~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~ 436 (731)
+++++.++.+..+|..+ .+.+++|+|++| .+..+|.. +. .+.+|++|+|++|+|+.+|. .+.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL---PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC---CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC---CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57888888888888753 356899999999 78777655 44 88999999999999998875 58889999999999
Q ss_pred cccccccccccccCCCCCCcEEEeeCcccC
Q 038165 437 YAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 437 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
+| .++.+|...+..+++|++|++++|.+.
T Consensus 97 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 97 SN-HLHTLDEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp SS-CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CC-cCCcCCHHHhCCCcCCCEEECCCCccc
Confidence 98 678888777889999999999988765
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=3.6e-13 Score=125.04 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=103.8
Q ss_pred ccceEEEeecCCcc--cCCCC-CCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCc-ccccccCCcCCCEE
Q 038165 335 EGAKRVSLMGNGIE--SLSEI-PTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLST-LPSGISSLVSLHHL 410 (731)
Q Consensus 335 ~~l~~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~-lP~~i~~l~~L~~L 410 (731)
++++.+++.+|.+. .++.. ..+++|++|++++|.+..+ ..+..+++|++|++++| .+.. +|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 47888888888887 66655 7788889999988888777 33778888999999888 5655 77777778889999
Q ss_pred eccCCCCCCcc--hHHhcCCcCcEeecccccccccccc---cccCCCCCCcEEEeeCcccCCC
Q 038165 411 DLSSADITGLP--QELKALEKLRYLNLEYAFNLSIIPH---QLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 411 ~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
++++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++++|.....
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99888888876 67888888999999888 5677776 3478888899988888876543
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=4.7e-13 Score=125.22 Aligned_cols=125 Identities=19% Similarity=0.313 Sum_probs=58.8
Q ss_pred ccceEEEeecCCcccCCCCCCCC-CeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccc-cCCcCCCEEec
Q 038165 335 EGAKRVSLMGNGIESLSEIPTCP-RLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGI-SSLVSLHHLDL 412 (731)
Q Consensus 335 ~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i-~~l~~L~~L~L 412 (731)
.+++.+++.+|.+..++.+..+. +|++|++++|.+..++ .+..+++|++|++++| .+..+|..+ +.+++|++|++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEEC
Confidence 34555555555555444443333 5555555555544441 1444555555555555 444444332 44455555555
Q ss_pred cCCCCCCcch--HHhcCCcCcEeeccccccccccccc---ccCCCCCCcEEEeeCc
Q 038165 413 SSADITGLPQ--ELKALEKLRYLNLEYAFNLSIIPHQ---LISGFSNLEVLRLRGC 463 (731)
Q Consensus 413 ~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~---~i~~l~~L~~L~l~~~ 463 (731)
++|.+..+|. .+..+++|++|++++| .+..+|.. ++..+++|+.|++++|
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 5555544444 4444555555555554 33344432 2444455555554444
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=7.1e-13 Score=120.29 Aligned_cols=122 Identities=24% Similarity=0.274 Sum_probs=66.5
Q ss_pred cceEEEeecCCcc--cCCCC-CCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCc-ccccccCCcCCCEEe
Q 038165 336 GAKRVSLMGNGIE--SLSEI-PTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLST-LPSGISSLVSLHHLD 411 (731)
Q Consensus 336 ~l~~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~-lP~~i~~l~~L~~L~ 411 (731)
+++.+++.+|.+. .++.. ..+++|+.|++++|.+..+ ..+..+++|++|++++| .+.. +|..++.+++|++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEE
Confidence 5566666666555 34332 5556666666666655554 22555556666666665 4443 555555555666666
Q ss_pred ccCCCCCCcc--hHHhcCCcCcEeecccccccccccc---cccCCCCCCcEEEee
Q 038165 412 LSSADITGLP--QELKALEKLRYLNLEYAFNLSIIPH---QLISGFSNLEVLRLR 461 (731)
Q Consensus 412 L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~~i~~l~~L~~L~l~ 461 (731)
+++|.++.+| ..+..+++|++|++++| .++.+|. ..++.+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 6666555543 45555566666666555 4444443 235555555555543
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=6.2e-12 Score=117.73 Aligned_cols=128 Identities=23% Similarity=0.405 Sum_probs=111.9
Q ss_pred ceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccccc-ccCCcCCCEEeccCC
Q 038165 337 AKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSG-ISSLVSLHHLDLSSA 415 (731)
Q Consensus 337 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~l~~L~~L~L~~~ 415 (731)
.+.+++.++.+..+|. ...++|+.|++++|.+..+++..|..+++|++|++++| .+..+|.. ++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 3567888888888764 33479999999999999999888899999999999999 78888765 689999999999999
Q ss_pred CCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCC
Q 038165 416 DITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCS 467 (731)
Q Consensus 416 ~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 467 (731)
.++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99998876 688999999999999 7788998867899999999999998764
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=5.8e-12 Score=119.49 Aligned_cols=127 Identities=20% Similarity=0.327 Sum_probs=108.5
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChh-hhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDG-FFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSSA 415 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~~ 415 (731)
+.++++++.+..+|... ..+|++|++++|.+..+++. +|..+++|++|+|++| .+..+ |..|+.+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 57888899998887632 34999999999999888764 5889999999999999 66665 788999999999999999
Q ss_pred CCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCC
Q 038165 416 DITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCS 467 (731)
Q Consensus 416 ~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 467 (731)
+++.+|.. +..+++|++|++++| .++.+++..+..+++|++|++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99997665 889999999999999 5666655458999999999999997763
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=117.28 Aligned_cols=125 Identities=23% Similarity=0.341 Sum_probs=108.4
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCEEeccCCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHHLDLSSAD 416 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~L~L~~~~ 416 (731)
+.+++.++.+..+|.. -.++|++|++++|.+..+|. .|..+++|++|+|++| .+..+| ..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 4678888888888753 24689999999999998885 4899999999999999 777776 468999999999999999
Q ss_pred CCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 417 ITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 417 l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
++.+|. .+..+++|++|++++| .++.+|...+..+++|++|++.+|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 999875 5889999999999999 788899877899999999999998765
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=7.1e-12 Score=113.60 Aligned_cols=110 Identities=21% Similarity=0.321 Sum_probs=96.4
Q ss_pred CCCCCeeEEEcccCCcc--ccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCC-cchHHhcCCcC
Q 038165 354 PTCPRLVTLLVDENPIV--EITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITG-LPQELKALEKL 430 (731)
Q Consensus 354 ~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~-lp~~i~~L~~L 430 (731)
...++|+.|++++|.+. .+|. .+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..+..+++|
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 34578999999999987 6666 4789999999999999 88877 689999999999999999999 88888889999
Q ss_pred cEeeccccccccccc--ccccCCCCCCcEEEeeCcccCCC
Q 038165 431 RYLNLEYAFNLSIIP--HQLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 431 ~~L~L~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
++|++++| .++.+| .. ++.+++|++|++++|.+.+.
T Consensus 91 ~~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp CEEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGGS
T ss_pred CEEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccch
Confidence 99999999 577765 44 89999999999999988743
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=4.6e-11 Score=110.69 Aligned_cols=131 Identities=27% Similarity=0.349 Sum_probs=112.0
Q ss_pred ceEEEEcCCccc--cCccc-cccccceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCC
Q 038165 315 QNFLVRAGVKLT--EAPKI-EEWEGAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSEN 391 (731)
Q Consensus 315 ~~~~~~~~~~~~--~~~~~-~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 391 (731)
-..+...+..+. .++.. ..+++++.+++.+|.+..++.+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence 344555555555 55544 778899999999999999988899999999999999998856666788999999999999
Q ss_pred CCCCccc--ccccCCcCCCEEeccCCCCCCcch----HHhcCCcCcEeeccccccccccccc
Q 038165 392 FHLSTLP--SGISSLVSLHHLDLSSADITGLPQ----ELKALEKLRYLNLEYAFNLSIIPHQ 447 (731)
Q Consensus 392 ~~~~~lP--~~i~~l~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~L~~~~~l~~lp~~ 447 (731)
.+..+| ..++.+++|++|++++|.++.+|. .+..+++|++|++++| ....+|.+
T Consensus 106 -~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 106 -KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp -SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred -ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhcccc
Confidence 888877 789999999999999999999987 7899999999999999 66777764
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=5.4e-12 Score=144.72 Aligned_cols=89 Identities=22% Similarity=0.259 Sum_probs=45.4
Q ss_pred hhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCC
Q 038165 375 GFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSN 454 (731)
Q Consensus 375 ~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~ 454 (731)
..+..+++|++|+|++| .+..+|..+..+.+|++|+|++|.|+.+|..+++|++|++|+|++| .++.+|.. +++|++
T Consensus 218 ~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTT
T ss_pred hhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCC
Confidence 33445555555555555 4445555555555555555555555555555555555555555555 34455544 455555
Q ss_pred CcEEEeeCcccC
Q 038165 455 LEVLRLRGCGCC 466 (731)
Q Consensus 455 L~~L~l~~~~~~ 466 (731)
|++|++++|.+.
T Consensus 295 L~~L~L~~N~l~ 306 (727)
T 4b8c_D 295 LKYFYFFDNMVT 306 (727)
T ss_dssp CSEEECCSSCCC
T ss_pred CCEEECCCCCCC
Confidence 555555555443
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=8.1e-12 Score=143.26 Aligned_cols=117 Identities=26% Similarity=0.315 Sum_probs=105.5
Q ss_pred CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCc
Q 038165 352 EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLR 431 (731)
Q Consensus 352 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 431 (731)
.+..+++|+.|++++|.+..++..++ .+++|++|+|++| .+..+|..|+.+.+|++|+|++|.|+.+|..+++|++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 35788999999999999999998844 8999999999999 888999999999999999999999999999999999999
Q ss_pred EeecccccccccccccccCCCCCCcEEEeeCcccCCCchhh
Q 038165 432 YLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEE 472 (731)
Q Consensus 432 ~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 472 (731)
+|+|++| .++.+|.. ++++++|++|++++|.+.+.++..
T Consensus 297 ~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 297 YFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp EEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHH
T ss_pred EEECCCC-CCCccChh-hhcCCCccEEeCCCCccCCCChHH
Confidence 9999999 77899988 999999999999999998765543
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1.7e-11 Score=114.58 Aligned_cols=124 Identities=26% Similarity=0.301 Sum_probs=110.2
Q ss_pred ceEEEEcCCccccCccccccc-cceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCC
Q 038165 315 QNFLVRAGVKLTEAPKIEEWE-GAKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFH 393 (731)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~ 393 (731)
-..+...+..+..++...... +++.+++++|.+..++.+..+++|++|++++|.+..+++..+..+++|++|++++| .
T Consensus 21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~ 99 (176)
T 1a9n_A 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-S 99 (176)
T ss_dssp CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-C
T ss_pred ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-c
Confidence 345555666666666666665 99999999999999989999999999999999999999887899999999999999 8
Q ss_pred CCcccc--cccCCcCCCEEeccCCCCCCcchH----HhcCCcCcEeeccccc
Q 038165 394 LSTLPS--GISSLVSLHHLDLSSADITGLPQE----LKALEKLRYLNLEYAF 439 (731)
Q Consensus 394 ~~~lP~--~i~~l~~L~~L~L~~~~l~~lp~~----i~~L~~L~~L~L~~~~ 439 (731)
+..+|. .++.+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 100 i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 100 LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 899997 889999999999999999999986 8999999999999984
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=5.8e-11 Score=112.56 Aligned_cols=79 Identities=27% Similarity=0.353 Sum_probs=41.2
Q ss_pred cEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCc
Q 038165 384 RVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGC 463 (731)
Q Consensus 384 ~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 463 (731)
++++++++ .+..+|..+. .+|++|++++|.++.+|..+.++++|++|++++| .++.++...+.++++|++|++++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555 4555554442 3555555555555555555555555555555555 444454444555555555555555
Q ss_pred ccC
Q 038165 464 GCC 466 (731)
Q Consensus 464 ~~~ 466 (731)
.+.
T Consensus 89 ~l~ 91 (193)
T 2wfh_A 89 RLR 91 (193)
T ss_dssp CCC
T ss_pred ccC
Confidence 433
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=2.5e-11 Score=134.73 Aligned_cols=105 Identities=21% Similarity=0.317 Sum_probs=88.4
Q ss_pred CeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeeccc
Q 038165 358 RLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEY 437 (731)
Q Consensus 358 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 437 (731)
.|++|++++|.++.+|. ++.+++|++|+|++| .+..+|..|+.+++|++|+|++|.|+.+| .++++++|++|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 48888888888888875 788888999999888 77788888888889999999998888888 788888999999988
Q ss_pred ccccccc--cccccCCCCCCcEEEeeCcccCCC
Q 038165 438 AFNLSII--PHQLISGFSNLEVLRLRGCGCCSV 468 (731)
Q Consensus 438 ~~~l~~l--p~~~i~~l~~L~~L~l~~~~~~~~ 468 (731)
| .++.+ |.. ++.+++|++|++++|.+.+.
T Consensus 518 N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 518 N-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp S-CCCSSSTTGG-GGGCTTCCEEECTTSGGGGS
T ss_pred C-CCCCCCCcHH-HhcCCCCCEEEecCCcCCCC
Confidence 8 66666 555 88888999999988887754
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=3.3e-11 Score=114.30 Aligned_cols=101 Identities=22% Similarity=0.330 Sum_probs=50.8
Q ss_pred eEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccccc--ccCCcCCCEEeccCCCCCCc-chHHhcCCcCcEeecc
Q 038165 360 VTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSG--ISSLVSLHHLDLSSADITGL-PQELKALEKLRYLNLE 436 (731)
Q Consensus 360 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~--i~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~ 436 (731)
++++++++.+..+|..+ ..+|++|++++| .+..+|.. ++.+++|++|+|++|.++.+ |..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCC---CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 44555555555555432 125555555555 44444432 45555555555555555554 3445555555555555
Q ss_pred cccccccccccccCCCCCCcEEEeeCccc
Q 038165 437 YAFNLSIIPHQLISGFSNLEVLRLRGCGC 465 (731)
Q Consensus 437 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 465 (731)
+| .++.++...+.++++|++|++++|.+
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 87 EN-KIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp SC-CCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred CC-cCCccCHHHhcCCCCCCEEECCCCcC
Confidence 55 34444443345555555555555543
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=2.5e-11 Score=134.82 Aligned_cols=79 Identities=29% Similarity=0.389 Sum_probs=39.4
Q ss_pred ccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeC
Q 038165 383 LRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRG 462 (731)
Q Consensus 383 L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~ 462 (731)
|++|+|++| .+..+|. ++.+++|++|+|++|.++.+|..++++++|++|+|++| .++.+| . ++++++|++|++++
T Consensus 443 L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-G-VANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEECCS
T ss_pred ceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEECCC
Confidence 445555555 4444443 55555555555555555555555555555555555554 344444 2 45555555555555
Q ss_pred cccC
Q 038165 463 CGCC 466 (731)
Q Consensus 463 ~~~~ 466 (731)
|.+.
T Consensus 518 N~l~ 521 (567)
T 1dce_A 518 NRLQ 521 (567)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5444
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=1.9e-10 Score=106.92 Aligned_cols=103 Identities=21% Similarity=0.334 Sum_probs=78.5
Q ss_pred eEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccCCCCCCcchH-HhcCCcCcEeeccc
Q 038165 360 VTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSSADITGLPQE-LKALEKLRYLNLEY 437 (731)
Q Consensus 360 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~ 437 (731)
+.++++++.+..+|..+ .++|++|+|++| .+..+ |..|+.+++|++|+|++|+|+.+|.. +.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777777777653 367888888888 66665 55677888888888888888888776 46788888888888
Q ss_pred ccccccccccccCCCCCCcEEEeeCcccCC
Q 038165 438 AFNLSIIPHQLISGFSNLEVLRLRGCGCCS 467 (731)
Q Consensus 438 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 467 (731)
| .++.+|...+..+++|++|++++|.+..
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8 6777877667888888888888887653
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=3.4e-12 Score=121.90 Aligned_cols=126 Identities=25% Similarity=0.313 Sum_probs=102.4
Q ss_pred cceEEEeecC--CcccCC-CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEec
Q 038165 336 GAKRVSLMGN--GIESLS-EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDL 412 (731)
Q Consensus 336 ~l~~l~l~~~--~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L 412 (731)
.++...+.+. .++.++ .+..+++|++|++++|.+..+| .+..+++|++|++++| .+..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 4455555543 344443 4577889999999999988887 4788999999999999 88889988888899999999
Q ss_pred cCCCCCCcchHHhcCCcCcEeecccccccccccc-cccCCCCCCcEEEeeCcccC
Q 038165 413 SSADITGLPQELKALEKLRYLNLEYAFNLSIIPH-QLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 413 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 466 (731)
++|+++.+| .+..+++|++|++++| .++.+|. ..+..+++|++|++++|.+.
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 999999988 6889999999999998 6676664 33889999999999998765
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=2.3e-10 Score=106.00 Aligned_cols=103 Identities=24% Similarity=0.354 Sum_probs=80.1
Q ss_pred eeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcc-cccccCCcCCCEEeccCCCCCCcchH-HhcCCcCcEeecc
Q 038165 359 LVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTL-PSGISSLVSLHHLDLSSADITGLPQE-LKALEKLRYLNLE 436 (731)
Q Consensus 359 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~ 436 (731)
.++++++++.++.+|..+ .++|++|+|++| .+..+ |..|..+.+|++|+|++|+|+.+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 356777777777777653 377888888888 66666 55678888888888888888888776 4788888888888
Q ss_pred cccccccccccccCCCCCCcEEEeeCcccC
Q 038165 437 YAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 437 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
+| .++.+|...+..+++|++|++++|.+.
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88 677787766888888888888888765
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.09 E-value=5.5e-10 Score=104.28 Aligned_cols=117 Identities=28% Similarity=0.449 Sum_probs=100.0
Q ss_pred CCccccCccccccccceEEEeecCCcccCCC--CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc
Q 038165 322 GVKLTEAPKIEEWEGAKRVSLMGNGIESLSE--IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS 399 (731)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~ 399 (731)
+..+..+|. ...+.++.+++.+|.+..++. +..+++|++|++++|.+..+++..|..+++|++|++++| .+..+|.
T Consensus 16 ~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 93 (177)
T 2o6r_A 16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN 93 (177)
T ss_dssp SSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCH
Confidence 334445543 223689999999999998765 688999999999999999999888899999999999999 7888776
Q ss_pred c-ccCCcCCCEEeccCCCCCCcchHH-hcCCcCcEeecccccc
Q 038165 400 G-ISSLVSLHHLDLSSADITGLPQEL-KALEKLRYLNLEYAFN 440 (731)
Q Consensus 400 ~-i~~l~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L~~~~~ 440 (731)
. ++.+++|++|++++|.++.+|..+ ..+++|++|++++|..
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 5 689999999999999999998874 7899999999999954
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=6.5e-10 Score=103.26 Aligned_cols=106 Identities=21% Similarity=0.333 Sum_probs=92.2
Q ss_pred eEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccccc-ccCCcCCCEEeccCCC
Q 038165 338 KRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSG-ISSLVSLHHLDLSSAD 416 (731)
Q Consensus 338 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~l~~L~~L~L~~~~ 416 (731)
+.+++.++.+..+|... .++|+.|++++|.+..+++..|..+++|++|+|++| .+..+|.. |..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 57888889998887633 389999999999999998888999999999999999 88888876 5899999999999999
Q ss_pred CCCcchH-HhcCCcCcEeecccccccccccc
Q 038165 417 ITGLPQE-LKALEKLRYLNLEYAFNLSIIPH 446 (731)
Q Consensus 417 l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~ 446 (731)
|+.+|.. +..+++|++|++++| .+...+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred cceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 9999886 889999999999999 4555544
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=6.8e-10 Score=115.08 Aligned_cols=285 Identities=13% Similarity=0.027 Sum_probs=150.0
Q ss_pred cccceEEEeecCCc-ccCCCCCC-CCCeeEEEcccCCcc--ccChhhhcCCCCccEEEcCCCCCCCccc-ccccC-----
Q 038165 334 WEGAKRVSLMGNGI-ESLSEIPT-CPRLVTLLVDENPIV--EITDGFFQSMSSLRVLSLSENFHLSTLP-SGISS----- 403 (731)
Q Consensus 334 ~~~l~~l~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~----- 403 (731)
+.+++.+.+.++-- ..+..+.. +++|++|++++|.+. ...... ++.++++.+..+ .+| ..|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhccccccc
Confidence 45667777665311 11112222 667777777777765 222221 222344444433 222 23445
Q ss_pred ---CcCCCEEeccCCCCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcC
Q 038165 404 ---LVSLHHLDLSSADITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCA 479 (731)
Q Consensus 404 ---l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 479 (731)
+.+|+.|+|.+ .++.++.. +..+++|+.|++.++ .+..+++.++..+.++..+.......... . .
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~--------~-~ 165 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRF--------K-N 165 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHT--------S-T
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhc--------c-c
Confidence 67777777777 67776654 666777777777776 55566666666655555444433110000 0 0
Q ss_pred CcccchhhhccCCCCc-EEEEEeechhHHHhhhCCchhhccceEEEEeecCCCCcccccc-cccCCccEEeccCCCccce
Q 038165 480 DAEPLMKELLGLKRLN-VLSWTFRSSLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHL-AYMENLQELDLEYCNLEEM 557 (731)
Q Consensus 480 ~~~~~i~~l~~L~~L~-~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~ 557 (731)
.-.-..+.....|+ .+.+...+... ..+....-....+..+.+.+.-. ......+ ..+++|++|++.+|.+..+
T Consensus 166 --~i~~~~f~~~~~L~~~i~~~~~~~l~-~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~~n~i~~I 241 (329)
T 3sb4_A 166 --RWEHFAFIEGEPLETTIQVGAMGKLE-DEIMKAGLQPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDISKTNATTI 241 (329)
T ss_dssp --TTTTSCEEESCCCEEEEEECTTCCHH-HHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred --cccccccccccccceeEEecCCCcHH-HHHhhcccCccccceEEEeeeec-HHHHHHHHHhcCCCeEEECCCCCccee
Confidence 00000011222332 12221111111 01111111123455555554320 0111111 2378899999998888877
Q ss_pred eecCccccccccccccCCccEEEEeccCC-CCCchhhccCCcc-EEeeecccccccccccccccccccccCCCCccCcCc
Q 038165 558 KIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLK-VLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQL 635 (731)
Q Consensus 558 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~-~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L 635 (731)
+...+.. +++|++|++.++-. -....+..+++|+ .|.+.+ .++.+. +..+.++++|
T Consensus 242 ~~~aF~~--------~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~------------~~aF~~c~~L 299 (329)
T 3sb4_A 242 PDFTFAQ--------KKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIE------------FGAFMGCDNL 299 (329)
T ss_dssp CTTTTTT--------CTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEEC------------TTTTTTCTTE
T ss_pred cHhhhhC--------CCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEc------------hhhhhCCccC
Confidence 7666543 78889998887633 4445677888888 888876 555553 3577888889
Q ss_pred cEeeccccccccccCCC-CcCCCCccEEe
Q 038165 636 ESLSVWRGINLKSVYPN-PLPFPKLKKIE 663 (731)
Q Consensus 636 ~~L~L~~~~~L~~l~~~-~~~lp~L~~L~ 663 (731)
+.+.+.+ .+++.++.. ...+++|+.|.
T Consensus 300 ~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 9888865 467777653 33455666554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.1e-09 Score=101.34 Aligned_cols=101 Identities=24% Similarity=0.396 Sum_probs=88.8
Q ss_pred ceEEEeecCCcccCCCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccccc-ccCCcCCCEEeccCC
Q 038165 337 AKRVSLMGNGIESLSEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSG-ISSLVSLHHLDLSSA 415 (731)
Q Consensus 337 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~l~~L~~L~L~~~ 415 (731)
.+.++++++.+..+|... .++|++|++++|.++.+++..|..+++|++|+|++| .+..+|.. |..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 357888999998887543 489999999999999998888999999999999999 78888765 589999999999999
Q ss_pred CCCCcchH-HhcCCcCcEeeccccc
Q 038165 416 DITGLPQE-LKALEKLRYLNLEYAF 439 (731)
Q Consensus 416 ~l~~lp~~-i~~L~~L~~L~L~~~~ 439 (731)
+++.+|.. +.++++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 99999875 8899999999999983
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=1.4e-11 Score=117.51 Aligned_cols=126 Identities=18% Similarity=0.246 Sum_probs=100.8
Q ss_pred CeeEEEcccC--CccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCCcchHHhcCCcCcEeec
Q 038165 358 RLVTLLVDEN--PIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITGLPQELKALEKLRYLNL 435 (731)
Q Consensus 358 ~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 435 (731)
.|+...+.+. .++.+|. .+..+++|++|++++| .+..+| .++.+++|++|++++|.++.+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 4555555554 3555555 4888999999999999 888899 899999999999999999999998999999999999
Q ss_pred ccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhhccCCCCcEEEEEeec
Q 038165 436 EYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKELLGLKRLNVLSWTFRS 503 (731)
Q Consensus 436 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~L~~L~~l~~~~~~ 503 (731)
++| .++.+|. ++.+++|++|++++|.+.+. ..+..+..+++|+.+++..+.
T Consensus 101 ~~N-~l~~l~~--~~~l~~L~~L~l~~N~i~~~--------------~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 101 SYN-QIASLSG--IEKLVNLRVLYMSNNKITNW--------------GEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEE-ECCCHHH--HHHHHHSSEEEESEEECCCH--------------HHHHHHTTTTTCSEEEECSCH
T ss_pred cCC-cCCcCCc--cccCCCCCEEECCCCcCCch--------------hHHHHHhcCCCCCEEEecCCc
Confidence 999 7788884 88999999999999987632 223456667777777766443
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=1.8e-09 Score=111.83 Aligned_cols=262 Identities=13% Similarity=0.064 Sum_probs=168.4
Q ss_pred cccceEEEeecCCcccCCC-CCCCCCeeEEEcccCCccccChhhhcC--------CCCccEEEcCCCCCCCcccc-cccC
Q 038165 334 WEGAKRVSLMGNGIESLSE-IPTCPRLVTLLVDENPIVEITDGFFQS--------MSSLRVLSLSENFHLSTLPS-GISS 403 (731)
Q Consensus 334 ~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~--------l~~L~~L~L~~~~~~~~lP~-~i~~ 403 (731)
.++++.|++++|.+..... ...++.++.+.+..+ .++...|.+ +++|+.|+|.+ .++.+++ .|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 5689999999999873211 122233455555544 677788888 99999999988 4666654 5889
Q ss_pred CcCCCEEeccCCCCCCcchH-HhcCCcCcEeeccccc---ccccccccccCCCCCCc-EEEeeCcccCCCchhhhhhhhc
Q 038165 404 LVSLHHLDLSSADITGLPQE-LKALEKLRYLNLEYAF---NLSIIPHQLISGFSNLE-VLRLRGCGCCSVTEEEEANVLC 478 (731)
Q Consensus 404 l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~---~l~~lp~~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~ 478 (731)
+.+|+.|++.++.+..++.. +....++..+.+.... ....+....+..+.+|+ .+.+......
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l------------ 190 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL------------ 190 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH------------
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH------------
Confidence 99999999999988887654 5555666666655421 22333443355666776 5555443211
Q ss_pred CCcccch-hhhccCCCCcEEEEEeec-hhHHHhhhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccc
Q 038165 479 ADAEPLM-KELLGLKRLNVLSWTFRS-SLAVQKFLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEE 556 (731)
Q Consensus 479 ~~~~~~i-~~l~~L~~L~~l~~~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 556 (731)
+..+ .......++..+.....- ......+ ....+.|+.+++.++.........|.++++|++|++..+ +..
T Consensus 191 ---~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l---~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~ 263 (329)
T 3sb4_A 191 ---EDEIMKAGLQPRDINFLTIEGKLDNADFKLI---RDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT 263 (329)
T ss_dssp ---HHHHHHTTCCGGGCSEEEEEECCCHHHHHHH---HHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred ---HHHHhhcccCccccceEEEeeeecHHHHHHH---HHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce
Confidence 1111 111123344444443221 1111111 122468999999988766666667999999999999987 666
Q ss_pred eeecCccccccccccccCCcc-EEEEeccCC-CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcC
Q 038165 557 MKIDCPEEVKKLFRNGFRSLN-TVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQ 634 (731)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~L~-~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 634 (731)
++...+.. +++|+ .+.+.+.-. -....+..+++|+.|++..+ .++.+. +..+.++++
T Consensus 264 I~~~aF~~--------~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~------------~~aF~~~~~ 322 (329)
T 3sb4_A 264 IGQRVFSN--------CGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGD-KITTLG------------DELFGNGVP 322 (329)
T ss_dssp ECTTTTTT--------CTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSS-CCCEEC------------TTTTCTTCC
T ss_pred ehHHHhhC--------ChhccEEEEEcccceEEchhhhhCCccCCEEEeCCC-ccCccc------------hhhhcCCcc
Confidence 66666543 88999 999988322 44567889999999999654 455553 346778888
Q ss_pred ccEeec
Q 038165 635 LESLSV 640 (731)
Q Consensus 635 L~~L~L 640 (731)
|+.++.
T Consensus 323 L~~ly~ 328 (329)
T 3sb4_A 323 SKLIYK 328 (329)
T ss_dssp CCEEEC
T ss_pred hhhhcc
Confidence 888764
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=8.6e-08 Score=101.50 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=75.8
Q ss_pred CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCEEeccCCCCCCcchHHhcCCcC
Q 038165 352 EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHHLDLSSADITGLPQELKALEKL 430 (731)
Q Consensus 352 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~~L 430 (731)
.|.++ +|+.+.+..+ +..++...|.++ +|+.+.+.. .+..++ ..|.++.+|+.+++.+++++.+|.......+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeeccc
Confidence 34554 6888887655 777777777774 688888875 355554 46777888888888888888887776566788
Q ss_pred cEeecccccccccccccccCCCCCCcEEEeeC
Q 038165 431 RYLNLEYAFNLSIIPHQLISGFSNLEVLRLRG 462 (731)
Q Consensus 431 ~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~ 462 (731)
+.+.+..+ ++.++..++.++++|+.+.+..
T Consensus 206 ~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 206 EEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp SEEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred CEEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence 88888743 6777777788888888888765
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=1.9e-08 Score=105.01 Aligned_cols=100 Identities=20% Similarity=0.325 Sum_probs=61.5
Q ss_pred EEcccC-CccccChhhhcCCCCccEEEcCC-CCCCCccc-ccccCCcCCCEEeccCCCCCCcch-HHhcCCcCcEeeccc
Q 038165 362 LLVDEN-PIVEITDGFFQSMSSLRVLSLSE-NFHLSTLP-SGISSLVSLHHLDLSSADITGLPQ-ELKALEKLRYLNLEY 437 (731)
Q Consensus 362 L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~-~~~~~~lP-~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~ 437 (731)
++.+++ .++.+|. +..+.+|++|+|++ | .+..+| ..|+.+.+|++|+|++|+|+.+|. .+.+|++|++|+|++
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 345555 5555655 55666666666664 5 555555 346666666666666666666544 356666777777766
Q ss_pred ccccccccccccCCCCCCcEEEeeCcccC
Q 038165 438 AFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 438 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
| .++.+|...+..++ |+.|++.+|.+.
T Consensus 90 N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp S-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred C-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6 55666665444444 777777766554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=3.3e-08 Score=103.16 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=85.3
Q ss_pred EEEeecC-CcccCCCCCCCCCeeEEEccc-CCccccChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCEEeccCC
Q 038165 339 RVSLMGN-GIESLSEIPTCPRLVTLLVDE-NPIVEITDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHHLDLSSA 415 (731)
Q Consensus 339 ~l~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~L~L~~~ 415 (731)
.+++.++ .+..+|.+..+++|+.|++++ |.+..+++..|..+++|++|+|++| .+..+| ..|+++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 4567776 788888888889999999996 8899999888999999999999999 777665 46799999999999999
Q ss_pred CCCCcchHHhcCCcCcEeeccccc
Q 038165 416 DITGLPQELKALEKLRYLNLEYAF 439 (731)
Q Consensus 416 ~l~~lp~~i~~L~~L~~L~L~~~~ 439 (731)
+|+.+|..+....+|+.|+|.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 999998876655559999999883
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=6.5e-07 Score=94.76 Aligned_cols=119 Identities=13% Similarity=0.260 Sum_probs=94.2
Q ss_pred cceEEEeecCCcccCC--CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEecc
Q 038165 336 GAKRVSLMGNGIESLS--EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLS 413 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~ 413 (731)
+++.+.+..+ +..++ +|.++ +|+.+.+.. .+..+....|.++++|+.+++.++ .+..+|.......+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC
Confidence 5777776544 55553 35554 699999986 688888888999999999999998 888888766557899999998
Q ss_pred CCCCCCcchH-HhcCCcCcEeecccccccccccccccCCCCCCcEEEeeC
Q 038165 414 SADITGLPQE-LKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRG 462 (731)
Q Consensus 414 ~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~ 462 (731)
.+ ++.++.. +.++.+|+.+++..+ ++.++..++.+ .+|+.+.+..
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC
Confidence 54 7777654 678899999999874 68888887777 7888888854
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.44 E-value=4.9e-08 Score=102.37 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=8.5
Q ss_pred cCCccEEeccCCCccc
Q 038165 541 MENLQELDLEYCNLEE 556 (731)
Q Consensus 541 l~~L~~L~l~~~~~~~ 556 (731)
.++|++|++++|.+..
T Consensus 238 ~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 238 HPSLELLHLYFNELSS 253 (372)
T ss_dssp CSSCCEEECTTSSCCH
T ss_pred CCCCCEEeccCCCCCH
Confidence 3555555555555443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=1e-07 Score=99.95 Aligned_cols=128 Identities=22% Similarity=0.271 Sum_probs=74.6
Q ss_pred cceEEEeecCCccc--CCCC-CCCCCeeEEEcccCCccccChhhh-----cCCCCccEEEcCCCCCCCc-----cccccc
Q 038165 336 GAKRVSLMGNGIES--LSEI-PTCPRLVTLLVDENPIVEITDGFF-----QSMSSLRVLSLSENFHLST-----LPSGIS 402 (731)
Q Consensus 336 ~l~~l~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~l~~~~~~~~-----~~l~~L~~L~L~~~~~~~~-----lP~~i~ 402 (731)
.++.+++++|.+.. +..+ ..+++|+.|++++|.+.......+ ...++|++|+|++| .++. ++..+.
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLA 180 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHh
Confidence 66677777776643 1122 234567777777776554332222 23566777777777 4432 444455
Q ss_pred CCcCCCEEeccCCCCCC-----cchHHhcCCcCcEeeccccccccc-----ccccccCCCCCCcEEEeeCcccC
Q 038165 403 SLVSLHHLDLSSADITG-----LPQELKALEKLRYLNLEYAFNLSI-----IPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 403 ~l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
.+++|++|+|++|.|.. ++..+...++|+.|+|++| .++. ++.. +...++|++|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARA-AREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHH-HHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHH-HHhCCCCCEEeccCCCCC
Confidence 66677777777776654 3455566667777777777 3432 2222 345566777777777655
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=1.9e-05 Score=83.55 Aligned_cols=107 Identities=18% Similarity=0.358 Sum_probs=60.5
Q ss_pred CCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCEEeccCC---------------
Q 038165 352 EIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHHLDLSSA--------------- 415 (731)
Q Consensus 352 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~L~L~~~--------------- 415 (731)
+|.+|.+|+.+.+..+ ++.+....|.++.+|+.+++..+ ++.++ ..|.++.+|+.+.+..+
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 4566666666666432 55666666666666666666543 33332 23344444444433221
Q ss_pred ------CCCCc-chHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCc
Q 038165 416 ------DITGL-PQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGC 463 (731)
Q Consensus 416 ------~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 463 (731)
.+..+ ...+.++.+|+.+.+.++ +..++..++.++.+|+.+.+..+
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC
Confidence 01111 123566778888888754 46677777888888888877653
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=6.8e-07 Score=81.36 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=41.9
Q ss_pred CccEEEEeccCC--CCCchhhccCCccEEeeecccccccccccccccccccccCCCCcc----CcCccEeeccccccccc
Q 038165 575 SLNTVVLRSCRG--KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNF----FAQLESLSVWRGINLKS 648 (731)
Q Consensus 575 ~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~L~~ 648 (731)
+|+.|++++|.. ..+..+..+++|++|+|++|..+++-.. ..+.. .++|++|+|++|+++.+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL------------~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL------------ERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH------------HHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH------------HHHHhcccccCCCCEEEcCCCCcCCH
Confidence 455555555555 3344445555666666666655443311 01111 23566666666655543
Q ss_pred cCC-CCcCCCCccEEeeccccCCCC
Q 038165 649 VYP-NPLPFPKLKKIEVRECRQLKK 672 (731)
Q Consensus 649 l~~-~~~~lp~L~~L~l~~C~~L~~ 672 (731)
-.. ....+++|++|++++|++++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 111 112356666666666666554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.11 E-value=2.5e-06 Score=88.55 Aligned_cols=44 Identities=27% Similarity=0.232 Sum_probs=28.1
Q ss_pred CcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 419 GLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 419 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
.++.-+..+++|+.|++++|..+ .+|. + .+++|++|++..|.+.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLP 206 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCC
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCC
Confidence 35555667777888888776332 3444 3 3778888888777554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.07 E-value=4.8e-06 Score=86.41 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=53.5
Q ss_pred hhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEEeccCCCCCC-cchHHh--cCCcCcEeecccccc-------cccc
Q 038165 375 GFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHLDLSSADITG-LPQELK--ALEKLRYLNLEYAFN-------LSII 444 (731)
Q Consensus 375 ~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L~L~~~~l~~-lp~~i~--~L~~L~~L~L~~~~~-------l~~l 444 (731)
.++..+++|+.|+|+++ .-..+|. +. +++|++|+|..|.+.. -...+. .+++|++|+|+.+.. +..+
T Consensus 166 ~ll~~~P~L~~L~L~g~-~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGT-NNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECC-BTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCC-CCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44677888999999887 3234554 43 7888888888776543 112233 678888888753211 1112
Q ss_pred cccc-cCCCCCCcEEEeeCcccC
Q 038165 445 PHQL-ISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 445 p~~~-i~~l~~L~~L~l~~~~~~ 466 (731)
...+ ...+++|++|++.+|.+.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCc
Confidence 1110 124678888888777543
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=2.3e-06 Score=77.84 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=53.9
Q ss_pred CCccEEeccCCCccceeecCccccccccccccCCccEEEEeccCC---CCCchhhcc----CCccEEeeecccccccccc
Q 038165 542 ENLQELDLEYCNLEEMKIDCPEEVKKLFRNGFRSLNTVVLRSCRG---KDLTWLVFV----QNLKVLYIGFCGDMEEIVS 614 (731)
Q Consensus 542 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l----~~L~~L~L~~~~~l~~l~~ 614 (731)
.+|++|++++|.+........ ..+++|+.|+|++|.. ..+..+..+ ++|++|+|++|..+++-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L--------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM--------EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG--------TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHh--------cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 357777777776544211111 2367777777777765 334445443 4688888888877766422
Q ss_pred cccccccccccCCCCccCcCccEeeccccccccc
Q 038165 615 VDKLRDISGIIGSERNFFAQLESLSVWRGINLKS 648 (731)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 648 (731)
..+..+++|++|++++|+.+..
T Consensus 133 ------------~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 ------------IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ------------HHGGGCTTCCEEEEESCTTCCC
T ss_pred ------------HHHhcCCCCCEEECCCCCCCCc
Confidence 1344678888888888877665
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.82 E-value=0.00023 Score=75.26 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=26.8
Q ss_pred ChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCEEeccCCCCCCcch-HHhcCCcCcEeeccc
Q 038165 373 TDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHHLDLSSADITGLPQ-ELKALEKLRYLNLEY 437 (731)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~ 437 (731)
....|..+.+|+.+.+.++ +..++ ..|.++.+|+.+.+..+ ++.++. .+.+...|+.+.+..
T Consensus 154 ~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred chhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 3344555555555555433 22222 23444555555555433 333222 233444454444443
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.81 E-value=0.00046 Score=72.89 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=14.2
Q ss_pred eeEEEcccCCccccChhhhcCCCCccEEEcCC
Q 038165 359 LVTLLVDENPIVEITDGFFQSMSSLRVLSLSE 390 (731)
Q Consensus 359 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~ 390 (731)
|+.+.+..+ ++.+....|.++.+|+.+.+..
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~ 96 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQD 96 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGG
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecC
Confidence 444444322 4444444455555555554443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.76 E-value=5.2e-06 Score=81.59 Aligned_cols=81 Identities=26% Similarity=0.275 Sum_probs=50.8
Q ss_pred cCCCCccEEEcCCCCCCCcc---cccccCCcCCCEEeccCCCCCCcchHHhcCC--cCcEeecccccccccccc------
Q 038165 378 QSMSSLRVLSLSENFHLSTL---PSGISSLVSLHHLDLSSADITGLPQELKALE--KLRYLNLEYAFNLSIIPH------ 446 (731)
Q Consensus 378 ~~l~~L~~L~L~~~~~~~~l---P~~i~~l~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~L~~~~~l~~lp~------ 446 (731)
.++++|++|+|++| .+..+ |..++.+++|++|+|++|.|+.+ ..+..+. +|+.|+|++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45777788888877 55543 34556677777777777777766 2345454 777777777754333441
Q ss_pred cccCCCCCCcEEEe
Q 038165 447 QLISGFSNLEVLRL 460 (731)
Q Consensus 447 ~~i~~l~~L~~L~l 460 (731)
.++..+++|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23556667766653
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.67 E-value=2.8e-05 Score=72.52 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=71.9
Q ss_pred CCCCCeeEEEcccC-Ccccc----ChhhhcCCCCccEEEcCCCCCCCc-----ccccccCCcCCCEEeccCCCCCC----
Q 038165 354 PTCPRLVTLLVDEN-PIVEI----TDGFFQSMSSLRVLSLSENFHLST-----LPSGISSLVSLHHLDLSSADITG---- 419 (731)
Q Consensus 354 ~~~~~L~~L~l~~~-~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~-----lP~~i~~l~~L~~L~L~~~~l~~---- 419 (731)
...+.|++|++++| .+..- ....+...++|++|+|++| .+.. +...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 56677888888887 65431 1222556678888888888 5542 34444555778888888887765
Q ss_pred -cchHHhcCCcCcEeec--cccccccc-----ccccccCCCCCCcEEEeeCcccC
Q 038165 420 -LPQELKALEKLRYLNL--EYAFNLSI-----IPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 420 -lp~~i~~L~~L~~L~L--~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
+...+...++|++|++ ++| .++. +... +...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANM-LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHH-HHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHH-HHhCCCcCEEeccCCCCC
Confidence 4556677778888888 656 3332 2222 455677888888877554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.53 E-value=0.00013 Score=71.73 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=61.1
Q ss_pred CCCCCeeEEEcccCCccccCh--hhhcCCCCccEEEcCCCCCCCcccccccCCc--CCCEEeccCCCCCC-cc-------
Q 038165 354 PTCPRLVTLLVDENPIVEITD--GFFQSMSSLRVLSLSENFHLSTLPSGISSLV--SLHHLDLSSADITG-LP------- 421 (731)
Q Consensus 354 ~~~~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~--~L~~L~L~~~~l~~-lp------- 421 (731)
.++++|++|++++|.+..++. ..+..+++|++|+|++| .+..+. .+..+. +|++|+|++|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356788899999998776553 44678999999999999 777663 455555 89999999998875 44
Q ss_pred hHHhcCCcCcEeec
Q 038165 422 QELKALEKLRYLNL 435 (731)
Q Consensus 422 ~~i~~L~~L~~L~L 435 (731)
..+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23678999999973
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.46 E-value=0.0015 Score=68.87 Aligned_cols=281 Identities=12% Similarity=0.140 Sum_probs=147.6
Q ss_pred cceEEEeecCCcccC--CCCCCCCCeeEEEcccCC---ccccChhhhcCCCCccEEEcCCCCCCCccc-ccccCCcCCCE
Q 038165 336 GAKRVSLMGNGIESL--SEIPTCPRLVTLLVDENP---IVEITDGFFQSMSSLRVLSLSENFHLSTLP-SGISSLVSLHH 409 (731)
Q Consensus 336 ~l~~l~l~~~~~~~l--~~~~~~~~L~~L~l~~~~---l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~l~~L~~ 409 (731)
.++.+.+-. .++.+ .+|.+|.+|+.+.+..+. ++.+....|..+.+|+.+.+..+ +..++ ..|..+.+|+.
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 467777753 35544 457889999999987763 77788888888888888777654 44444 34677788888
Q ss_pred EeccCCCCCCcch-HHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccCCCchhhhhhhhcCCcccchhhh
Q 038165 410 LDLSSADITGLPQ-ELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCCSVTEEEEANVLCADAEPLMKEL 488 (731)
Q Consensus 410 L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l 488 (731)
+.+..+ +..++. .+....+|+.+.+..+ +..+...++.+ .+|+.+.+...-.. . ....+...
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~-i------------~~~af~~c 204 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTR-I------------GTNAFSEC 204 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCE-E------------CTTTTTTC
T ss_pred ccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccc-c------------ccchhhhc
Confidence 888653 344433 3556777888877654 56666665543 56777776543111 0 00011111
Q ss_pred ccCCCCcEEEEEeechhHHHh------------hhCCchhhccceEEEEeecCCCCcccccccccCCccEEeccCCCccc
Q 038165 489 LGLKRLNVLSWTFRSSLAVQK------------FLKYPKLVSITQSVWVYQCESAPFNVLHLAYMENLQELDLEYCNLEE 556 (731)
Q Consensus 489 ~~L~~L~~l~~~~~~~~~~~~------------l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 556 (731)
..+............... +.... ....+....+... ........+..+.+|+.+.+.... ..
T Consensus 205 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~-~~ 278 (394)
T 4gt6_A 205 ---FALSTITSDSESYPAIDNVLYEKSANGDYALIRYP-SQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSV-VS 278 (394)
T ss_dssp ---TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC-TTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTC-CE
T ss_pred ---cccceecccccccccccceeecccccccccccccc-cccccceEEcCCc-ceEcccceeeecccccEEeccccc-ce
Confidence 111111100000000000 00000 0001111111110 001112236677788888775432 22
Q ss_pred eeecCccccccccccccCCccEEEEeccCC-CCCchhhccCCccEEeeecccccccccccccccccccccCCCCccCcCc
Q 038165 557 MKIDCPEEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKVLYIGFCGDMEEIVSVDKLRDISGIIGSERNFFAQL 635 (731)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L 635 (731)
+....+ ..+++|+.+.+...-. -.-..+..+.+|+.+.|.+ +++.+. ...+.++.+|
T Consensus 279 I~~~aF--------~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~------------~~aF~~C~~L 336 (394)
T 4gt6_A 279 IGTGAF--------MNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GITQIL------------DDAFAGCEQL 336 (394)
T ss_dssp ECTTTT--------TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEEC------------TTTTTTCTTC
T ss_pred ecCccc--------ccccccccccCCCcccccCceeecCCCCcCEEEeCC--cccEeh------------HhHhhCCCCC
Confidence 222222 2367777777753322 2234456778888888754 344442 2466777888
Q ss_pred cEeeccccccccccCCC-CcCCCCccEEeecc
Q 038165 636 ESLSVWRGINLKSVYPN-PLPFPKLKKIEVRE 666 (731)
Q Consensus 636 ~~L~L~~~~~L~~l~~~-~~~lp~L~~L~l~~ 666 (731)
+.+.|-. +++.+... ...+++|+.+.+.+
T Consensus 337 ~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 337 ERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred CEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 8887743 45555432 33467777777654
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.45 E-value=7.6e-05 Score=69.50 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=81.8
Q ss_pred ccceEEEeecC-CcccC------CCCCCCCCeeEEEcccCCccccC----hhhhcCCCCccEEEcCCCCCCCc-----cc
Q 038165 335 EGAKRVSLMGN-GIESL------SEIPTCPRLVTLLVDENPIVEIT----DGFFQSMSSLRVLSLSENFHLST-----LP 398 (731)
Q Consensus 335 ~~l~~l~l~~~-~~~~l------~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~-----lP 398 (731)
+.++.+++.+| .+..- ..+...++|++|++++|.+..-. ...+...+.|++|+|++| .+.. +.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHH
Confidence 58999999998 77641 33467889999999999875422 223556789999999999 6654 56
Q ss_pred ccccCCcCCCEEec--cCCCCCC-----cchHHhcCCcCcEeeccccc
Q 038165 399 SGISSLVSLHHLDL--SSADITG-----LPQELKALEKLRYLNLEYAF 439 (731)
Q Consensus 399 ~~i~~l~~L~~L~L--~~~~l~~-----lp~~i~~L~~L~~L~L~~~~ 439 (731)
..+....+|++|+| ++|.|.. +...+...++|++|++++|.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 67777889999999 8888876 55667778999999999983
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.26 E-value=0.011 Score=61.88 Aligned_cols=123 Identities=15% Similarity=0.242 Sum_probs=71.0
Q ss_pred ccccceEEEeecCCcccC--CCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccccccCCcCCCEE
Q 038165 333 EWEGAKRVSLMGNGIESL--SEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPSGISSLVSLHHL 410 (731)
Q Consensus 333 ~~~~l~~l~l~~~~~~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~~i~~l~~L~~L 410 (731)
..++++.+.+. ..++.+ .+|.+|.+|+.+.+..+ ++.+....|.++ +|..+.+..+ +..++...-...+|+.+
T Consensus 44 ~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEE
T ss_pred cccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcccc
Confidence 33566666664 334444 34677788888887543 667777777776 4666665433 45554433233467777
Q ss_pred eccCCCCCCcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCc
Q 038165 411 DLSSADITGLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGC 463 (731)
Q Consensus 411 ~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 463 (731)
.+..+ +..+......-.+|..+.+..+ ++.+....+..+.+|+.+.+...
T Consensus 119 ~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp ECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred cCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence 77654 3334333322335555555443 45565555677777777776654
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.60 E-value=0.019 Score=59.96 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=52.5
Q ss_pred CCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCCCCCCcccc-cccCCcCCCEEeccCCCCCCcchH-HhcCCcC
Q 038165 353 IPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSENFHLSTLPS-GISSLVSLHHLDLSSADITGLPQE-LKALEKL 430 (731)
Q Consensus 353 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L 430 (731)
+..+..|+.+.+..+ ++.+....|..+.+|+.+.+..+ +..++. .|..+.+|+.+.+.++.++.+++. +.++.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 344555555555433 44444445555555555555432 333332 345555566666555555555432 4455556
Q ss_pred cEeecccccccccccccccCCCCCCcEEEee
Q 038165 431 RYLNLEYAFNLSIIPHQLISGFSNLEVLRLR 461 (731)
Q Consensus 431 ~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~ 461 (731)
+.+.+..+ ++.++..++.++++|+.+.+.
T Consensus 313 ~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 313 SSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 65555432 455555555555555555543
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.04 E-value=0.034 Score=47.79 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=13.7
Q ss_pred CCCEEeccCCCCCCcchH-HhcCCcCcEeecccc
Q 038165 406 SLHHLDLSSADITGLPQE-LKALEKLRYLNLEYA 438 (731)
Q Consensus 406 ~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~ 438 (731)
+|++|+|++|+|+.+|.. +..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344444444444444332 233344444444433
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.72 E-value=0.027 Score=48.39 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=46.6
Q ss_pred CEEeccCCCCC--CcchHHhcCCcCcEeecccccccccccccccCCCCCCcEEEeeCcccC
Q 038165 408 HHLDLSSADIT--GLPQELKALEKLRYLNLEYAFNLSIIPHQLISGFSNLEVLRLRGCGCC 466 (731)
Q Consensus 408 ~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 466 (731)
..++.++.+++ .+|..+. .+|++|+|++| .++.+|.+++..+++|+.|++.+|...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 36777788887 7886532 47999999999 789999998999999999999998654
No 167
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=90.81 E-value=0.87 Score=37.78 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=55.9
Q ss_pred hHHhHHhhhccccchhhchHHhHHHHHHHHHHhhhhhHHHHHHHHHhhhcccccchhHHHhHHHHHHHHHHHHHHHHHhh
Q 038165 13 FFNRTLNCVGQQAKYIWGLEKNLEGLETELHKLTRTRDDLKTRVEVEEQRPRTRRTNQVAGWLEDVQKLENEFTKLQQVK 92 (731)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~v~~wL~~v~~~~d~v~~l~~~~ 92 (731)
+++++++-..+++.....+++.++.++.++..+++.-.+ ++..........|+.|+++|..+-.|++|+++..
T Consensus 6 ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f 78 (115)
T 3qfl_A 6 LIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIEDVVDKF 78 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788877777878788888888888887666554333 2222101234568999999999999999999887
Q ss_pred HHHhh
Q 038165 93 AQEMD 97 (731)
Q Consensus 93 ~~~~~ 97 (731)
.....
T Consensus 79 ~~~~~ 83 (115)
T 3qfl_A 79 LVQVD 83 (115)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66544
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.14 E-value=0.33 Score=44.69 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=7.2
Q ss_pred cCCCEEeccCCCCC
Q 038165 405 VSLHHLDLSSADIT 418 (731)
Q Consensus 405 ~~L~~L~L~~~~l~ 418 (731)
..|++|+|++|.|.
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 44555555555544
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.08 E-value=0.71 Score=42.48 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=59.4
Q ss_pred hcCCCCccEEEcCCCCCCC-----cccccccCCcCCCEEeccCCCCCC-----cchHHhcCCcCcEeeccccccccc---
Q 038165 377 FQSMSSLRVLSLSENFHLS-----TLPSGISSLVSLHHLDLSSADITG-----LPQELKALEKLRYLNLEYAFNLSI--- 443 (731)
Q Consensus 377 ~~~l~~L~~L~L~~~~~~~-----~lP~~i~~l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~--- 443 (731)
+..-+.|+.|+|+++..+. .+-+.+..-..|+.|+|++|.|.. +-+.+..=+.|++|+|++| .++.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 4556778888888742443 233445556789999999998865 5556677788999999998 4442
Q ss_pred --ccccccCCCCCCcEEEeeCcc
Q 038165 444 --IPHQLISGFSNLEVLRLRGCG 464 (731)
Q Consensus 444 --lp~~~i~~l~~L~~L~l~~~~ 464 (731)
+-.. +..-+.|++|+++++.
T Consensus 116 ~ala~a-L~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 116 ARLLRS-TLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHH-TTTTCCCSEEECCCCS
T ss_pred HHHHHH-HhhCCceeEEECCCCc
Confidence 2222 5556779999998763
No 170
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.49 E-value=2.9 Score=42.29 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=78.8
Q ss_pred eEeeecCCcccccccccccc-cccccccHHHHHHHHHHHcCCchHHHHHHHHHhcCCCChhHHHHHHHHhhcccCCCCCC
Q 038165 137 EVVVEKAPDGAAIELPLAQT-IVGQELLVDRLAETLARECGGLPLALKTVGRAMKSQRKVGDWKRAIHKMTTSASKFSGM 215 (731)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~l~~~~~~~~~~ 215 (731)
.+...++..+++.+++.... ..|.+ .-.+...++++.++|.|+++..++..+....+...|- ..+-.....
T Consensus 197 ~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~---- 268 (350)
T 2qen_A 197 EVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTLEVAKG---- 268 (350)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHH----
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHH---HHHHHHHHH----
Confidence 45555666666655543210 00100 0145778999999999999999987654312222221 111110000
Q ss_pred hHHHHhhh-hhhccCCChhhHHHHHhHhcccCCCcccChhhHHHHHHHc-CccccchhhhhHHHHHHHhhcccccCCCcc
Q 038165 216 KEEVFSRL-KFSYDSLSTDELRSCLLYCCLYPEDYEIPRRELIDYWISE-GFVYDFDDGCDFIDDLLQACLLEEEGDDHV 293 (731)
Q Consensus 216 ~~~i~~~L-~~sy~~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~w~a~-g~~~~~~~g~~~~~~L~~~sli~~~~~~~~ 293 (731)
.+...+ .+.++ ++ ..+..+..+|+ +. .+...+.....+. |-+.. .....+++.|.+.+++.... +.+
T Consensus 269 --~~~~~l~~l~~~--~~-~~~~~l~~la~---g~-~~~~~l~~~~~~~~~~~~~-~~~~~~l~~L~~~gli~~~~-~~y 337 (350)
T 2qen_A 269 --LIMGELEELRRR--SP-RYVDILRAIAL---GY-NRWSLIRDYLAVKGTKIPE-PRLYALLENLKKMNWIVEED-NTY 337 (350)
T ss_dssp --HHHHHHHHHHHH--CH-HHHHHHHHHHT---TC-CSHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHTTSEEEET-TEE
T ss_pred --HHHHHHHHHHhC--Ch-hHHHHHHHHHh---CC-CCHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhCCCEEecC-CEE
Confidence 111111 12222 55 78999999998 32 4445555443222 11221 34567899999999998753 445
Q ss_pred ch-hhHHHHHH
Q 038165 294 KM-HDMIREMS 303 (731)
Q Consensus 294 ~m-hdli~dl~ 303 (731)
.+ |.++++..
T Consensus 338 ~~~~p~~~~~~ 348 (350)
T 2qen_A 338 KIADPVVATVL 348 (350)
T ss_dssp EESSHHHHHHH
T ss_pred EEecHHHHHHH
Confidence 54 56666543
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.17 E-value=4.1 Score=41.20 Aligned_cols=146 Identities=13% Similarity=0.138 Sum_probs=79.6
Q ss_pred eEeeecCCcccccccccccccccc-cccHHHHHHHHHHHcCCchHHHHHHHHHhcCCCChhHHHHHHHHhhcccCCCCCC
Q 038165 137 EVVVEKAPDGAAIELPLAQTIVGQ-ELLVDRLAETLARECGGLPLALKTVGRAMKSQRKVGDWKRAIHKMTTSASKFSGM 215 (731)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~l~~~~~~~~~~ 215 (731)
.+...++..+++.+++... ++. .....+. .+|++.|+|.|+++..++..+....+...|-.. ..+. ..
T Consensus 203 ~i~l~~l~~~e~~~~l~~~--~~~~~~~~~~~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~--~~~~-~~----- 271 (357)
T 2fna_A 203 TVELKPFSREEAIEFLRRG--FQEADIDFKDY-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQ--TLEY-AK----- 271 (357)
T ss_dssp EEEECCCCHHHHHHHHHHH--HHHHTCCCCCH-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHH--HHHH-HH-----
T ss_pred eeecCCCCHHHHHHHHHHH--HHHcCCCCCcH-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHH--HHHH-HH-----
Confidence 4445566666665554331 110 0001112 789999999999999999876543333334221 1110 00
Q ss_pred hHHHHhhhh-hhcc--CCChhhHHHHHhHhcccCCCcccChhhHHHHHH-HcCc-cccchhhhhHHHHHHHhhcccccCC
Q 038165 216 KEEVFSRLK-FSYD--SLSTDELRSCLLYCCLYPEDYEIPRRELIDYWI-SEGF-VYDFDDGCDFIDDLLQACLLEEEGD 290 (731)
Q Consensus 216 ~~~i~~~L~-~sy~--~L~~~~~k~cfl~~a~fp~~~~~~~~~li~~w~-a~g~-~~~~~~g~~~~~~L~~~sli~~~~~ 290 (731)
..+...+. +.|+ .|++ ..+..+..+|+ |. +...+..... ..|. +.. .....+++.|+++++|....
T Consensus 272 -~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~---g~--~~~~l~~~~~~~~g~~~~~-~~~~~~L~~L~~~gli~~~~- 342 (357)
T 2fna_A 272 -KLILKEFENFLHGREIARK-RYLNIMRTLSK---CG--KWSDVKRALELEEGIEISD-SEIYNYLTQLTKHSWIIKEG- 342 (357)
T ss_dssp -HHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---CB--CHHHHHHHHHHHHCSCCCH-HHHHHHHHHHHHTTSEEESS-
T ss_pred -HHHHHHHHHHhhccccccH-HHHHHHHHHHc---CC--CHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhCCCEEecC-
Confidence 01111221 2221 5777 78999999998 32 4444443221 2231 222 34567899999999998753
Q ss_pred Cccc-hhhHHHHH
Q 038165 291 DHVK-MHDMIREM 302 (731)
Q Consensus 291 ~~~~-mhdli~dl 302 (731)
..+. .|.++++.
T Consensus 343 ~~y~f~~~~~~~~ 355 (357)
T 2fna_A 343 EKYCPSEPLISLA 355 (357)
T ss_dssp SCEEESSHHHHHH
T ss_pred CEEEecCHHHHHh
Confidence 4555 46777764
No 172
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=58.36 E-value=23 Score=36.48 Aligned_cols=138 Identities=10% Similarity=-0.044 Sum_probs=74.1
Q ss_pred EeeecCCcccccccccccc--cccccccHHHHHHHHHHHcC------CchHHHHHHHHHhc------CC--CChhHHHHH
Q 038165 138 VVVEKAPDGAAIELPLAQT--IVGQELLVDRLAETLARECG------GLPLALKTVGRAMK------SQ--RKVGDWKRA 201 (731)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~~~iv~~c~------GlPLal~~~g~~L~------~~--~~~~~W~~~ 201 (731)
+...++..+++.+++.... .+.....-.+....|+++|+ |.|..+..+..... +. -+.+.+..+
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~ 289 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKA 289 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 4445555566665553221 01111112567888999999 99976655443211 11 223344443
Q ss_pred HHHhhcccCCCCCChHHHHhhhhhhccCCChhhHHHHHhHhcccC--CCcccChhhHHHHHH--H---cCccccc-hhhh
Q 038165 202 IHKMTTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCCLYP--EDYEIPRRELIDYWI--S---EGFVYDF-DDGC 273 (731)
Q Consensus 202 l~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~~k~cfl~~a~fp--~~~~~~~~~li~~w~--a---~g~~~~~-~~g~ 273 (731)
+..... ...+.-+++.||. +.+.++..+|.++ .+..+...++...+. + .|.-.-. ....
T Consensus 290 ~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (412)
T 1w5s_A 290 VSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYH 356 (412)
T ss_dssp HHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHH
T ss_pred HHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 332110 2345567889998 8899998888764 233455555554442 1 2221110 3345
Q ss_pred hHHHHHHHhhccccc
Q 038165 274 DFIDDLLQACLLEEE 288 (731)
Q Consensus 274 ~~~~~L~~~sli~~~ 288 (731)
.+++.|.+.++|...
T Consensus 357 ~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 357 IYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCEEee
Confidence 789999999999774
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=42.78 E-value=36 Score=33.53 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHh
Q 038165 165 DRLAETLARECGGLPLALKTVGRAM 189 (731)
Q Consensus 165 ~~l~~~iv~~c~GlPLal~~~g~~L 189 (731)
.+....+++++.|.|-.+..+...+
T Consensus 190 ~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 190 EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4567788899999998887665544
No 174
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.51 E-value=48 Score=26.27 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=9.9
Q ss_pred ccccChhhhcCCCCccEEEcCC
Q 038165 369 IVEITDGFFQSMSSLRVLSLSE 390 (731)
Q Consensus 369 l~~~~~~~~~~l~~L~~L~L~~ 390 (731)
++.+....|.++.+|+.+.+-.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP 29 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT
T ss_pred cCEecHHHhcCCCCCcEEEcCC
Confidence 3344444444444444444443
No 175
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.74 E-value=66 Score=25.41 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=33.8
Q ss_pred CCCCCCCCeeEEEcccCCccccChhhhcCCCCccEEEcCCC
Q 038165 351 SEIPTCPRLVTLLVDENPIVEITDGFFQSMSSLRVLSLSEN 391 (731)
Q Consensus 351 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~ 391 (731)
..|..|.+|+.+.+-.+ ++.+....|.++.+|+.+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 46789999999998765 67788888999999999999876
Done!