Query 038167
Match_columns 292
No_of_seqs 114 out of 1096
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:15:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14837 undecaprenyl pyrophos 100.0 2.2E-86 4.9E-91 597.5 24.4 229 29-287 2-230 (230)
2 PRK14832 undecaprenyl pyrophos 100.0 4.9E-86 1.1E-90 603.2 25.3 240 25-290 10-249 (253)
3 PRK14828 undecaprenyl pyrophos 100.0 2.7E-85 5.9E-90 600.6 28.9 254 9-287 2-256 (256)
4 PRK14835 undecaprenyl pyrophos 100.0 2.6E-85 5.6E-90 605.1 27.4 255 9-287 17-275 (275)
5 PRK14842 undecaprenyl pyrophos 100.0 1.8E-85 4E-90 596.0 25.8 235 28-288 3-238 (241)
6 PRK14838 undecaprenyl pyrophos 100.0 2.2E-85 4.7E-90 596.3 25.6 237 28-292 5-241 (242)
7 PRK14833 undecaprenyl pyrophos 100.0 3.6E-85 7.8E-90 592.2 25.9 233 30-289 1-233 (233)
8 PRK14831 undecaprenyl pyrophos 100.0 2.9E-85 6.3E-90 598.3 25.2 239 24-288 11-249 (249)
9 TIGR00055 uppS undecaprenyl di 100.0 4.7E-85 1E-89 588.4 24.7 226 35-286 1-226 (226)
10 PRK14840 undecaprenyl pyrophos 100.0 6.7E-85 1.5E-89 594.8 26.0 237 25-287 10-250 (250)
11 PRK14836 undecaprenyl pyrophos 100.0 3.8E-85 8.3E-90 598.4 23.5 241 25-291 6-246 (253)
12 PRK14829 undecaprenyl pyrophos 100.0 1E-84 2.2E-89 593.2 25.1 236 27-288 8-243 (243)
13 PRK14841 undecaprenyl pyrophos 100.0 1.9E-84 4.1E-89 587.5 25.5 230 32-289 2-231 (233)
14 PRK14834 undecaprenyl pyrophos 100.0 7.8E-84 1.7E-88 588.2 26.3 237 27-289 8-244 (249)
15 PRK14830 undecaprenyl pyrophos 100.0 7E-84 1.5E-88 589.8 25.9 238 25-288 14-251 (251)
16 PRK14827 undecaprenyl pyrophos 100.0 8.1E-84 1.8E-88 599.2 25.4 242 20-287 54-295 (296)
17 PRK14839 undecaprenyl pyrophos 100.0 1.7E-83 3.6E-88 580.9 24.3 224 32-290 8-231 (239)
18 KOG1602 Cis-prenyltransferase 100.0 7.6E-82 1.6E-86 567.3 26.4 258 9-292 14-271 (271)
19 PTZ00349 dehydrodolichyl dipho 100.0 1.3E-81 2.9E-86 586.8 26.6 263 17-280 3-306 (322)
20 cd00475 CIS_IPPS Cis (Z)-Isopr 100.0 3.3E-81 7.2E-86 562.9 24.8 221 34-280 1-221 (221)
21 COG0020 UppS Undecaprenyl pyro 100.0 2.3E-79 4.9E-84 557.4 23.8 231 32-288 15-245 (245)
22 PRK10240 undecaprenyl pyrophos 100.0 4.7E-79 1E-83 551.1 23.6 223 41-289 1-223 (229)
23 PF01255 Prenyltransf: Putativ 100.0 2E-78 4.3E-83 546.8 21.5 223 40-287 1-223 (223)
24 KOG2818 Predicted undecaprenyl 99.8 2.6E-20 5.7E-25 169.1 12.7 206 27-287 58-263 (263)
25 PF13788 DUF4180: Domain of un 73.3 23 0.00051 29.0 7.7 82 63-162 20-103 (113)
26 TIGR00674 dapA dihydrodipicoli 72.7 74 0.0016 29.5 12.1 105 63-182 17-123 (285)
27 PF00701 DHDPS: Dihydrodipicol 71.9 79 0.0017 29.2 12.1 104 63-182 20-126 (289)
28 cd00408 DHDPS-like Dihydrodipi 67.4 1E+02 0.0022 28.2 12.1 105 63-182 16-122 (281)
29 PF01261 AP_endonuc_2: Xylose 64.2 40 0.00087 28.4 7.9 113 60-182 66-186 (213)
30 TIGR00629 uvde UV damage endon 64.2 1E+02 0.0022 29.6 11.3 107 62-174 49-174 (312)
31 PF01661 Macro: Macro domain; 62.5 70 0.0015 24.7 8.6 61 35-103 56-118 (118)
32 PLN02417 dihydrodipicolinate s 62.4 1.3E+02 0.0029 27.8 12.1 103 63-181 20-125 (280)
33 cd00950 DHDPS Dihydrodipicolin 62.2 1.3E+02 0.0028 27.7 12.4 103 64-181 20-124 (284)
34 PRK03170 dihydrodipicolinate s 61.0 1.4E+02 0.003 27.6 12.5 104 63-182 20-126 (292)
35 cd00019 AP2Ec AP endonuclease 60.5 1E+02 0.0022 28.0 10.4 66 58-131 78-143 (279)
36 TIGR03249 KdgD 5-dehydro-4-deo 59.9 96 0.0021 29.0 10.2 104 63-182 24-129 (296)
37 PF03851 UvdE: UV-endonuclease 59.9 71 0.0015 30.1 9.2 104 61-171 41-162 (275)
38 PRK09856 fructoselysine 3-epim 56.8 1.5E+02 0.0033 26.7 11.9 112 60-181 85-202 (275)
39 PRK04147 N-acetylneuraminate l 51.0 2.1E+02 0.0045 26.6 12.9 103 64-182 23-129 (293)
40 cd03770 SR_TndX_transposase Se 50.6 1.4E+02 0.003 24.5 9.0 71 65-151 22-95 (140)
41 PF02739 5_3_exonuc_N: 5'-3' e 49.3 40 0.00087 29.1 5.4 67 33-110 50-121 (169)
42 KOG4388 Hormone-sensitive lipa 47.8 42 0.00091 35.2 5.9 57 70-133 419-477 (880)
43 cd00954 NAL N-Acetylneuraminic 46.7 2.4E+02 0.0052 26.1 13.2 104 63-182 19-126 (288)
44 PRK09482 flap endonuclease-lik 45.8 89 0.0019 29.1 7.4 75 23-110 37-119 (256)
45 cd00952 CHBPH_aldolase Trans-o 45.1 2.7E+02 0.0059 26.2 12.6 106 62-182 26-133 (309)
46 cd00951 KDGDH 5-dehydro-4-deox 44.7 2.3E+02 0.0049 26.4 10.1 104 63-182 19-124 (289)
47 cd07947 DRE_TIM_Re_CS Clostrid 44.3 1.8E+02 0.0038 27.3 9.2 84 72-166 81-174 (279)
48 smart00281 LamB Laminin B doma 41.2 51 0.0011 27.1 4.5 50 228-278 40-99 (127)
49 PRK13745 anaerobic sulfatase-m 41.0 2.6E+02 0.0057 27.4 10.3 96 61-176 47-143 (412)
50 TIGR00538 hemN oxygen-independ 39.7 73 0.0016 31.7 6.2 49 63-111 216-276 (455)
51 PF13302 Acetyltransf_3: Acety 39.3 70 0.0015 25.1 5.0 34 57-91 95-129 (142)
52 cd07945 DRE_TIM_CMS Leptospira 39.1 1.9E+02 0.0041 27.0 8.6 97 71-181 80-188 (280)
53 COG0426 FpaA Uncharacterized f 38.9 4E+02 0.0088 26.4 11.2 53 128-182 301-356 (388)
54 PF06057 VirJ: Bacterial virul 38.3 1.8E+02 0.0039 26.0 7.8 85 36-145 3-98 (192)
55 TIGR00683 nanA N-acetylneurami 38.2 3.4E+02 0.0073 25.3 12.5 105 63-182 19-126 (290)
56 COG4294 Uve UV damage repair e 37.7 3.9E+02 0.0084 25.9 11.2 109 57-171 65-189 (347)
57 cd00008 53EXOc 5'-3' exonuclea 37.7 51 0.0011 30.0 4.4 51 34-85 50-105 (240)
58 TIGR02313 HpaI-NOT-DapA 2,4-di 37.4 3.5E+02 0.0075 25.2 12.2 104 63-182 19-125 (294)
59 PRK13347 coproporphyrinogen II 37.2 81 0.0018 31.4 6.1 49 63-111 217-277 (453)
60 PRK02551 flavoprotein NrdI; Pr 36.9 1.1E+02 0.0023 26.3 6.0 56 36-111 96-151 (154)
61 PRK03620 5-dehydro-4-deoxygluc 34.9 3.9E+02 0.0083 25.0 10.3 104 63-182 26-131 (303)
62 PRK13210 putative L-xylulose 5 34.0 3.5E+02 0.0076 24.3 11.4 65 60-131 89-153 (284)
63 cd02905 Macro_GDAP2_like Macro 33.5 1.6E+02 0.0035 24.6 6.5 40 64-103 93-132 (140)
64 cd00953 KDG_aldolase KDG (2-ke 31.2 4.2E+02 0.0092 24.4 11.1 101 62-180 17-120 (279)
65 COG0329 DapA Dihydrodipicolina 31.2 4.5E+02 0.0098 24.7 11.7 106 62-182 22-129 (299)
66 PF14202 TnpW: Transposon-enco 30.0 76 0.0017 20.7 3.1 28 153-180 8-35 (37)
67 cd02908 Macro_Appr_pase_like M 29.7 2.1E+02 0.0044 24.3 6.7 48 63-110 90-138 (165)
68 PRK05628 coproporphyrinogen II 29.5 1.5E+02 0.0033 28.5 6.5 29 63-91 173-201 (375)
69 cd02903 Macro_BAL_like Macro d 29.4 1.5E+02 0.0033 24.3 5.6 40 65-104 92-131 (137)
70 smart00633 Glyco_10 Glycosyl h 29.3 4.3E+02 0.0093 23.9 11.6 51 63-114 14-67 (254)
71 TIGR03581 EF_0839 conserved hy 29.3 1.1E+02 0.0023 28.2 4.9 45 63-107 187-235 (236)
72 TIGR00513 accA acetyl-CoA carb 28.9 78 0.0017 30.5 4.2 51 60-111 133-183 (316)
73 COG1856 Uncharacterized homolo 28.8 3.8E+02 0.0082 25.0 8.3 106 62-181 95-217 (275)
74 PF11760 CbiG_N: Cobalamin syn 28.7 22 0.00048 27.6 0.4 31 38-73 41-71 (84)
75 CHL00198 accA acetyl-CoA carbo 28.6 1.4E+02 0.003 28.9 5.8 31 60-90 136-166 (322)
76 PRK05799 coproporphyrinogen II 28.5 1.5E+02 0.0032 28.5 6.2 28 63-90 164-191 (374)
77 TIGR03586 PseI pseudaminic aci 28.4 2.9E+02 0.0062 26.7 8.0 178 57-290 69-262 (327)
78 PRK06294 coproporphyrinogen II 28.4 1.8E+02 0.0038 28.2 6.7 29 63-91 168-196 (370)
79 PRK09249 coproporphyrinogen II 28.1 1.3E+02 0.0029 29.9 5.9 26 63-88 216-241 (453)
80 TIGR02629 L_rham_iso_rhiz L-rh 28.0 90 0.002 31.2 4.6 82 31-116 87-200 (412)
81 PF00763 THF_DHG_CYH: Tetrahyd 27.8 3.2E+02 0.007 21.9 9.8 72 12-103 8-79 (117)
82 PLN03044 GTP cyclohydrolase I; 27.4 56 0.0012 29.1 2.7 59 35-132 87-145 (188)
83 TIGR00063 folE GTP cyclohydrol 27.4 50 0.0011 29.2 2.4 25 35-75 82-106 (180)
84 PRK09347 folE GTP cyclohydrola 26.3 60 0.0013 28.9 2.7 58 35-132 90-147 (188)
85 cd00642 GTP_cyclohydro1 GTP cy 26.0 50 0.0011 29.3 2.2 58 35-132 87-144 (185)
86 PRK07379 coproporphyrinogen II 26.0 1.8E+02 0.0039 28.5 6.3 50 63-112 180-242 (400)
87 PRK14168 bifunctional 5,10-met 26.0 5.8E+02 0.013 24.3 10.5 75 11-105 10-85 (297)
88 PRK08898 coproporphyrinogen II 26.0 2.1E+02 0.0045 28.0 6.7 50 63-112 186-244 (394)
89 COG0302 FolE GTP cyclohydrolas 25.8 66 0.0014 28.8 2.9 58 35-132 96-153 (195)
90 PRK05660 HemN family oxidoredu 25.7 1.8E+02 0.0039 28.2 6.2 51 62-112 171-230 (378)
91 PLN03230 acetyl-coenzyme A car 25.5 1.3E+02 0.0029 30.2 5.2 30 60-89 203-232 (431)
92 PRK05724 acetyl-CoA carboxylas 25.0 1.5E+02 0.0033 28.5 5.4 30 60-89 133-162 (319)
93 PF07894 DUF1669: Protein of u 25.0 2.3E+02 0.0051 26.9 6.6 78 23-134 138-215 (284)
94 cd01461 vWA_interalpha_trypsin 25.0 2.3E+02 0.0051 23.0 6.1 47 33-91 1-49 (171)
95 PRK05707 DNA polymerase III su 24.6 6.2E+02 0.013 24.1 11.0 33 122-154 104-136 (328)
96 cd03330 Macro_2 Macro domain, 24.4 2.1E+02 0.0044 23.1 5.5 42 64-105 89-130 (133)
97 TIGR00539 hemN_rel putative ox 24.1 2.2E+02 0.0047 27.3 6.4 29 63-91 165-193 (360)
98 COG2759 MIS1 Formyltetrahydrof 23.9 6.6E+02 0.014 25.9 9.7 129 31-183 317-454 (554)
99 PRK08208 coproporphyrinogen II 23.5 2.2E+02 0.0048 28.1 6.5 50 63-112 206-262 (430)
100 COG0635 HemN Coproporphyrinoge 23.4 97 0.0021 30.8 3.9 31 62-92 201-231 (416)
101 cd00477 FTHFS Formyltetrahydro 23.3 5.7E+02 0.012 26.5 9.3 106 56-183 334-440 (524)
102 PRK08629 coproporphyrinogen II 23.1 1.9E+02 0.0041 28.8 5.9 30 63-92 212-241 (433)
103 PRK13209 L-xylulose 5-phosphat 22.8 5.7E+02 0.012 23.0 11.3 66 59-131 93-158 (283)
104 PRK13850 type IV secretion sys 22.6 2.6E+02 0.0056 29.7 7.0 62 10-86 364-426 (670)
105 cd02904 Macro_H2A_like Macro d 22.5 3.3E+02 0.0071 24.1 6.7 42 64-105 113-154 (186)
106 PF07972 Flavodoxin_NdrI: NrdI 22.4 1.2E+02 0.0027 25.0 3.7 48 35-102 73-120 (122)
107 PRK13505 formate--tetrahydrofo 22.3 7.4E+02 0.016 25.9 10.0 101 57-183 351-457 (557)
108 PLN02746 hydroxymethylglutaryl 22.2 5.3E+02 0.012 25.1 8.6 97 71-181 127-238 (347)
109 PRK12319 acetyl-CoA carboxylas 22.1 1.2E+02 0.0026 28.3 4.0 51 60-111 80-130 (256)
110 cd02906 Macro_1 Macro domain, 22.0 2.2E+02 0.0048 23.8 5.3 40 64-103 103-142 (147)
111 COG0825 AccA Acetyl-CoA carbox 21.9 1.2E+02 0.0025 29.2 3.9 67 42-114 119-185 (317)
112 PF02472 ExbD: Biopolymer tran 21.8 2.5E+02 0.0053 22.2 5.4 45 23-84 81-125 (130)
113 cd01026 TOPRIM_OLD TOPRIM_OLD: 21.6 2.2E+02 0.0047 21.7 4.9 38 32-89 29-66 (97)
114 cd00003 PNPsynthase Pyridoxine 21.4 1.2E+02 0.0026 28.0 3.8 48 33-86 83-130 (234)
115 TIGR00542 hxl6Piso_put hexulos 21.3 6.1E+02 0.013 22.9 11.5 65 59-131 88-153 (279)
116 PRK08207 coproporphyrinogen II 21.3 2.2E+02 0.0048 28.9 6.1 51 62-112 333-394 (488)
117 TIGR03521 GldG gliding-associa 21.2 9E+02 0.02 24.8 10.6 33 230-262 234-272 (552)
118 TIGR02354 thiF_fam2 thiamine b 21.1 98 0.0021 27.4 3.1 26 70-95 36-64 (200)
119 COG3511 PlcC Phospholipase C [ 20.6 1.4E+02 0.003 30.7 4.3 14 35-48 49-62 (527)
120 PRK05904 coproporphyrinogen II 20.5 3.1E+02 0.0068 26.4 6.7 29 63-91 168-196 (353)
121 COG0678 AHP1 Peroxiredoxin [Po 20.5 65 0.0014 28.0 1.7 19 36-54 99-117 (165)
122 COG2056 Predicted permease [Ge 20.4 1.1E+02 0.0023 30.4 3.4 20 23-42 109-128 (444)
123 PRK14976 5'-3' exonuclease; Pr 20.4 97 0.0021 29.1 3.1 75 24-110 46-125 (281)
124 TIGR01162 purE phosphoribosyla 20.3 3.9E+02 0.0084 23.1 6.5 38 63-104 10-47 (156)
125 PRK13507 formate--tetrahydrofo 20.3 7.9E+02 0.017 25.8 9.7 106 56-183 379-485 (587)
126 PF13420 Acetyltransf_4: Acety 20.2 2.1E+02 0.0046 22.8 4.8 31 59-89 90-121 (155)
127 PF02534 T4SS-DNA_transf: Type 20.1 3.8E+02 0.0082 26.3 7.4 63 10-86 277-340 (469)
128 cd03767 SR_Res_par Serine reco 20.0 3.5E+02 0.0076 22.4 6.1 38 65-104 16-55 (146)
No 1
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.2e-86 Score=597.53 Aligned_cols=229 Identities=28% Similarity=0.509 Sum_probs=218.3
Q ss_pred CCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHH
Q 038167 29 SVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLE 108 (292)
Q Consensus 29 ~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~ 108 (292)
..+++|+|||||||||||||+++|++ ...||.+|++++.+++.||.++||++|||||||+|||+||++||+.||+++.+
T Consensus 2 ~~~~~P~HVAiImDGNrRwAk~~gl~-~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~ 80 (230)
T PRK14837 2 NKNSLPSHVGIIMDGNRRWALKKGLS-FFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIAD 80 (230)
T ss_pred CCCCCCCeEEEEccCCHHHHHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHH
Confidence 34789999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCC
Q 038167 109 KMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQ 188 (292)
Q Consensus 109 ~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~ 188 (292)
++.+... .++++||+|+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++..
T Consensus 81 ~l~~~~~---~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~------ 151 (230)
T PRK14837 81 YLSSEFN---FYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLSSG------ 151 (230)
T ss_pred HHHHHHH---HHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHhcC------
Confidence 9976554 3778899999999999999999999999999999999999999999999999999999998430
Q ss_pred CCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCH
Q 038167 189 AFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGL 268 (292)
Q Consensus 189 ~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~ 268 (292)
+++++||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+.
T Consensus 152 --------------------~~~~~i~e~~~~~~L~~~~~p~~DLlIRTsGE~RLSnFLLWQ~ayaElyF~d~lWPdF~~ 211 (230)
T PRK14837 152 --------------------LDLETLNENVFSKFLDNPELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYV 211 (230)
T ss_pred --------------------CChhhCCHHHHHHhhccCCCCCCCEEEECCCcccccccHHHhhhheEEEECCCCCccCCH
Confidence 356789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 038167 269 RHLIWAILNFQRHHAYLEK 287 (292)
Q Consensus 269 ~df~~al~~yq~r~~r~gk 287 (292)
+||.+||.+||+|++|||+
T Consensus 212 ~dl~~ai~~y~~R~RrfG~ 230 (230)
T PRK14837 212 NHYSKDLECFKNRKRNFGR 230 (230)
T ss_pred HHHHHHHHHHhcccCcCCC
Confidence 9999999999999999996
No 2
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.9e-86 Score=603.16 Aligned_cols=240 Identities=34% Similarity=0.569 Sum_probs=226.7
Q ss_pred HhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 25 FGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 25 ~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
...+..+++|+|||||||||||||+++|++ ...||.+|++++.+++.||.++||++|||||||+|||+||++||+.||+
T Consensus 10 ~~~~~~~~iP~HVAiImDGNrRwAk~~gl~-~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~ 88 (253)
T PRK14832 10 PPDLDPQKIPQHIAVIMDGNGRWATSQGLP-RIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLML 88 (253)
T ss_pred cccCCCCCCCCEEEEECCCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHH
Confidence 345667899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhc
Q 038167 105 LMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKK 184 (292)
Q Consensus 105 l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~ 184 (292)
++.+++.+... .++++||+|+|+||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++.+..
T Consensus 89 L~~~~l~~~~~---~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v~~ 165 (253)
T PRK14832 89 LFERLLRRELA---QMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQ 165 (253)
T ss_pred HHHHHHHHHHH---HHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 99999987654 477889999999999999999999999999999999999999999999999999999999988653
Q ss_pred cCCCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCC
Q 038167 185 TQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWP 264 (292)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WP 264 (292)
++ +++++|+++.|+++|+++++||||||||||||+||||||||||+||||||++++||
T Consensus 166 g~----------------------~~~~~i~e~~i~~~L~~~~~Pd~DLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWP 223 (253)
T PRK14832 166 GK----------------------LSADAVNEQLVEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWP 223 (253)
T ss_pred CC----------------------CChhhCCHHHHHHhhCcCCCCCCCEEEECCCcccccCcHHHHHhheEEEECCCCCC
Confidence 21 46778999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhhhc
Q 038167 265 EIGLRHLIWAILNFQRHHAYLEKKKK 290 (292)
Q Consensus 265 df~~~df~~al~~yq~r~~r~gk~~~ 290 (292)
||+.+||.+||.+||+|++||||.++
T Consensus 224 df~~~df~~al~~y~~R~RRfG~~~~ 249 (253)
T PRK14832 224 DFDRAAFHQALLSYQKRDRRFGQVKA 249 (253)
T ss_pred cCCHHHHHHHHHHHHhccccCCCccc
Confidence 99999999999999999999999865
No 3
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.7e-85 Score=600.64 Aligned_cols=254 Identities=30% Similarity=0.519 Sum_probs=236.7
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCCchHHHhcCCCccc-hhHHhHHHHHHHHHHHHHhCCCCeEEEEee
Q 038167 9 ESKLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEG-AGHRAGFLTLMSLLKYCAELSVKYVSIYAF 87 (292)
Q Consensus 9 ~~~~~~~~~~~~~~~l~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~-~Gh~~G~~~l~~ii~wc~~~GI~~vSvYaf 87 (292)
+|++...++.+|++.+.+.+..+++|+|||||||||||||+++|++ .. .||.+|++++.+++.||.++||++||||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~P~HvAiImDGNrRwA~~~gl~-~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaF 80 (256)
T PRK14828 2 RLNLRRLLYKVYARRLLGELDGAQVPGHVGIIVDGNRRWARKAGFT-DVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLL 80 (256)
T ss_pred ccchhHHHHHHHHHHHHhhcccCCCCCEEEEEecCChHHHHHcCCC-chHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 5889999999999999999998999999999999999999999999 87 999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCC
Q 038167 88 SIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSS 167 (292)
Q Consensus 88 S~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~G 167 (292)
|+|||+||++||+.||+++.+++.++.. +++|+|+|+||++.||++++++++++|+.|++|++++||||++|||
T Consensus 81 S~eN~~R~~~Ev~~Lm~L~~~~l~~~~~------~~~irv~~iG~~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Ygg 154 (256)
T PRK14828 81 STDNLGRPSEELNPLLDIIEDVVRQLAP------DGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGG 154 (256)
T ss_pred EhhhcCCCHHHHHHHHHHHHHHHHHHHH------hCCeEEEEECChhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCC
Confidence 9999999999999999999999987653 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCcc
Q 038167 168 TEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFL 247 (292)
Q Consensus 168 r~EIv~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FL 247 (292)
|+||++|++++++++..+.. ..++ ..++||++.|+++|++.++||||||||||||+||||||
T Consensus 155 r~EI~~A~~~~~~~~~~~~~-----------~~~~-------~~~~i~e~~i~~~L~~~~~P~pDLlIRTsGE~RLSnFL 216 (256)
T PRK14828 155 RQEIVDAVRSLLTEHKDKGT-----------SIDE-------LAESVTVDAISTHLYTGGQPDPDLVIRTSGEQRLSGFM 216 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------Chhh-------ccccCCHHHHHHHhccCCCCCCCEEEeCCCCCcccCCh
Confidence 99999999999988653210 0001 13468889999999999999999999999999999999
Q ss_pred ccccCceeEEecCCCCCCCCHHHHHHHHHHHHHHhhhhhh
Q 038167 248 LWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEK 287 (292)
Q Consensus 248 lWQs~ysEl~F~~~~WPdf~~~df~~al~~yq~r~~r~gk 287 (292)
|||++||||||++++||||++.||.+||.+||+|++||||
T Consensus 217 lWQ~ayaElyF~~~lWPdf~~~dl~~al~~y~~r~RRfG~ 256 (256)
T PRK14828 217 LWQSAHSEYYFCETYWPAFRKVDFLRALRDYSQRERRFGK 256 (256)
T ss_pred HHHhhheEEEeCCCCCccCCHHHHHHHHHHHHhhhccCCC
Confidence 9999999999999999999999999999999999999996
No 4
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.6e-85 Score=605.14 Aligned_cols=255 Identities=30% Similarity=0.468 Sum_probs=239.1
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeec
Q 038167 9 ESKLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFS 88 (292)
Q Consensus 9 ~~~~~~~~~~~~~~~l~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS 88 (292)
.|.+..+++.+|++.+.+.+..+++|+|||||||||||||+++|++ ..+||.+|++++.+++.||.++||++||||+||
T Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~P~HVAiImDGNrRwAk~~g~~-~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS 95 (275)
T PRK14835 17 RSAARGPLYWGYEQRLEREVKHGKLPRHLGLILDGNRRFARALGLQ-REMGHEFGVQKAYEVLEWCLELGIPTVTIWVFS 95 (275)
T ss_pred hhhccchhHHHHHHHHHhhcccCCCCCEEEEEecCchHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 4778889999999999999988999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCH
Q 038167 89 IDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSST 168 (292)
Q Consensus 89 ~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr 168 (292)
+|||+||++||++||+++.+++.+++.. +.++++||+|+|+||++.||+++++.++++|+.|++|++++||||++||||
T Consensus 96 ~EN~~R~~~EV~~Lm~L~~~~l~~~~~~-~~~~~~~irir~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr 174 (275)
T PRK14835 96 TDNFSRSPAEVETLMNLFEREARRMAVD-PRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGR 174 (275)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhch-hhhhhCCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCH
Confidence 9999999999999999999999887642 347788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCccchhhhcccCcC----CCCHHHHHhhhhcCCCCCCcEEEeecCCcccC
Q 038167 169 EEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN----TIKLVDLEKHMYMGVYPNPDILIRTSGENRLS 244 (292)
Q Consensus 169 ~EIv~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~----~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS 244 (292)
+||++|++++++++..++ ++|+ +++++.|+++|+++++||||||||||||+|||
T Consensus 175 ~EI~~A~k~i~~~~~~g~----------------------~~~~~i~~~~~e~~i~~~L~~~~~p~pDLLIRTsGE~RLS 232 (275)
T PRK14835 175 EEIVDAVKSLLLEAAATG----------------------KSPEEVAAELTPEHISAHLYTAGVPDPDFIIRTSGEIRLS 232 (275)
T ss_pred HHHHHHHHHHHHHHHcCC----------------------CChHHhcccCCHHHHHHHhccCCCCCCCEEEecCCCcccc
Confidence 999999999998865321 2333 35789999999999999999999999999999
Q ss_pred CccccccCceeEEecCCCCCCCCHHHHHHHHHHHHHHhhhhhh
Q 038167 245 NFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEK 287 (292)
Q Consensus 245 ~FLlWQs~ysEl~F~~~~WPdf~~~df~~al~~yq~r~~r~gk 287 (292)
||||||++||||||++++||||+++||.+||.+||+|++|||+
T Consensus 233 nFLLWQsayaElyF~d~lWPdF~~~d~~~ai~~yq~r~rRfG~ 275 (275)
T PRK14835 233 GFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRDYQGRERRFGR 275 (275)
T ss_pred CCHHHhhhheEEEeCCCCCCcCCHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999999999999999996
No 5
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.8e-85 Score=596.03 Aligned_cols=235 Identities=33% Similarity=0.550 Sum_probs=222.1
Q ss_pred cCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHH
Q 038167 28 LSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLML 107 (292)
Q Consensus 28 l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~ 107 (292)
|-.+++|+|||||||||||||+++|++ ..+||.+|++++.+++.||.++||++|||||||+|||+||++||+.||+++.
T Consensus 3 ~~~~~~P~HVaiImDGNrRwAk~~gl~-~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~ 81 (241)
T PRK14842 3 LFESTIPAHIAVIMDGNGRWAESQGKK-RSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLV 81 (241)
T ss_pred CCCCCCCCeEEEEcCCCHHHHHHCCCC-hhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHH
Confidence 456899999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCC
Q 038167 108 EKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQP 187 (292)
Q Consensus 108 ~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~ 187 (292)
+++.+... .+.++||+|+|+||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++..++
T Consensus 82 ~~l~~~~~---~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~- 157 (241)
T PRK14842 82 EFIETRLD---TIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLARKAKK- 157 (241)
T ss_pred HHHHHHHH---HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCC-
Confidence 99998765 36788999999999999999999999999999999999999999999999999999999998865321
Q ss_pred CCCCCCCCCCCCccchhhhcccCcC-CCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCC
Q 038167 188 QAFKPRNPQNDVTEDADEHKNKEQN-TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEI 266 (292)
Q Consensus 188 ~~~~~~~~~~~~~~~~~e~~~~~~~-~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf 266 (292)
++++ +|+++.|+++|+++++||||||||||||+|||||||||++||||||++++||||
T Consensus 158 ---------------------~~~~~~i~e~~~~~~L~t~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF 216 (241)
T PRK14842 158 ---------------------VTLEKPLKEKEFEKFLYTSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDF 216 (241)
T ss_pred ---------------------CCccccCCHHHHHHHhCcCCCCCCCEEEECCCcccccCCHHHHHhceEEEECCCCCccC
Confidence 2333 699999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhhh
Q 038167 267 GLRHLIWAILNFQRHHAYLEKK 288 (292)
Q Consensus 267 ~~~df~~al~~yq~r~~r~gk~ 288 (292)
+++||.+||.+||+|.+|||+.
T Consensus 217 ~~~dl~~al~~y~~R~RrfG~~ 238 (241)
T PRK14842 217 DKNSLVDSLKWYETRTRKFGGL 238 (241)
T ss_pred CHHHHHHHHHHHhccccccCCc
Confidence 9999999999999999999984
No 6
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.2e-85 Score=596.26 Aligned_cols=237 Identities=32% Similarity=0.571 Sum_probs=224.1
Q ss_pred cCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHH
Q 038167 28 LSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLML 107 (292)
Q Consensus 28 l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~ 107 (292)
+..+++|+|||||||||||||+++|++ ...||.+|++++.+++.||.++||++|||||||+|||+||++||+.||+++.
T Consensus 5 ~~~~~~P~HVAiImDGNrRwA~~~gl~-~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~ 83 (242)
T PRK14838 5 IDMNRIPQHIAIIMDGNGRWAKERGKE-RSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLL 83 (242)
T ss_pred ccCCCCCCEEEEeccCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHH
Confidence 456889999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCC
Q 038167 108 EKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQP 187 (292)
Q Consensus 108 ~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~ 187 (292)
+++.+. .++++||+|+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++..++
T Consensus 84 ~~l~~~-----~~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~- 157 (242)
T PRK14838 84 DSIEEE-----TFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGE- 157 (242)
T ss_pred HHHHHH-----HHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHHHHHHHhCC-
Confidence 998753 26678999999999999999999999999999999999999999999999999999999998875321
Q ss_pred CCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCC
Q 038167 188 QAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIG 267 (292)
Q Consensus 188 ~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~ 267 (292)
+++++||++.|+++|++.++||||||||||||+|||||||||++||||||++++||||+
T Consensus 158 ---------------------~~~~~i~e~~~~~~L~~~~~pd~DLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~ 216 (242)
T PRK14838 158 ---------------------LNPEEITEESISEHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFD 216 (242)
T ss_pred ---------------------CChhhCCHHHHHHHhccCCCCCCCEEEeCCCCccccCchHHHhcceeEEeCCCCCccCC
Confidence 46788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccC
Q 038167 268 LRHLIWAILNFQRHHAYLEKKKKQL 292 (292)
Q Consensus 268 ~~df~~al~~yq~r~~r~gk~~~~~ 292 (292)
++||.+||.+||+|++|||+..+|+
T Consensus 217 ~~d~~~ai~~y~~r~RrfG~~~~~~ 241 (242)
T PRK14838 217 EEELCKAIYDYQKRERRFGKTSEQI 241 (242)
T ss_pred HHHHHHHHHHHHhccccCCCccccc
Confidence 9999999999999999999976553
No 7
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.6e-85 Score=592.24 Aligned_cols=233 Identities=30% Similarity=0.446 Sum_probs=219.4
Q ss_pred CCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHH
Q 038167 30 VGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEK 109 (292)
Q Consensus 30 ~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~ 109 (292)
++++|+|||||||||||||+++|++ ...||..|++++.+++.||.++||++|||||||+|||+||++||++||+++.++
T Consensus 1 ~~~~P~HVaiImDGNrRwA~~~gl~-~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~ 79 (233)
T PRK14833 1 MDNTLKHLAIIMDGNGRWAKLRGKA-RAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKY 79 (233)
T ss_pred CCCCCCeEEEEccCCHHHHHHCCCC-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCC
Q 038167 110 MEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQA 189 (292)
Q Consensus 110 l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~ 189 (292)
+..... .+.++||+|+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++...
T Consensus 80 l~~~~~---~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~~---- 152 (233)
T PRK14833 80 LKDERS---TYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPSH---- 152 (233)
T ss_pred HHHHHH---HHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHhhcc----
Confidence 987543 4778899999999999999999999999999999999999999999999999999999999874210
Q ss_pred CCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHH
Q 038167 190 FKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLR 269 (292)
Q Consensus 190 ~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~ 269 (292)
....+|+++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+++
T Consensus 153 -------------------~~~~~i~e~~l~~~L~~~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~ 213 (233)
T PRK14833 153 -------------------IGELESLEEEISNCLDTADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPK 213 (233)
T ss_pred -------------------cCcccCCHHHHHHHhccCCCCCCCEEEECCCCccccccHHHHHhceeEEECCCCCCcCCHH
Confidence 0223688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 038167 270 HLIWAILNFQRHHAYLEKKK 289 (292)
Q Consensus 270 df~~al~~yq~r~~r~gk~~ 289 (292)
||..||.+||+|++|||+.|
T Consensus 214 dl~~al~~y~~r~rrfG~~~ 233 (233)
T PRK14833 214 DLENIISDFYKRVRKFGGLK 233 (233)
T ss_pred HHHHHHHHHHhhhhhccCCC
Confidence 99999999999999999976
No 8
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.9e-85 Score=598.34 Aligned_cols=239 Identities=30% Similarity=0.530 Sum_probs=225.6
Q ss_pred HHhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHH
Q 038167 24 VFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLM 103 (292)
Q Consensus 24 l~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm 103 (292)
+.+.+..+++|+|||||||||||||+++|++ ...||..|++++.+++.||.++||++|||||||+|||+||++||+.||
T Consensus 11 ~~~~~~~~~~P~HVaiImDGNrRwA~~~gl~-~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm 89 (249)
T PRK14831 11 LPADLDPQRLPKHVAVIMDGNGRWAKRRGLP-RIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLM 89 (249)
T ss_pred hhhhcccCCCCCeEEEecCCcHHHHHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHH
Confidence 3445667899999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhh
Q 038167 104 DLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTK 183 (292)
Q Consensus 104 ~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~ 183 (292)
+++.+++.+... .+.++||+++|+||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++.
T Consensus 90 ~L~~~~l~~~~~---~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~~~v~ 166 (249)
T PRK14831 90 TLFERVLRRELE---ELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQ 166 (249)
T ss_pred HHHHHHHHHHHH---HHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 999999987654 36789999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCC
Q 038167 184 KTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALW 263 (292)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~W 263 (292)
.++ +++++|+++.|+++|++.++||||||||||||+|||||||||++||||||++++|
T Consensus 167 ~g~----------------------l~~~~i~e~~~~~~L~t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lW 224 (249)
T PRK14831 167 QGE----------------------LDPSEIDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLW 224 (249)
T ss_pred cCC----------------------CChHhCCHHHHHHhhccCCCCCCCEEEeCCCCccccCchhhhhhceeEEECCCCC
Confidence 421 4678899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhh
Q 038167 264 PEIGLRHLIWAILNFQRHHAYLEKK 288 (292)
Q Consensus 264 Pdf~~~df~~al~~yq~r~~r~gk~ 288 (292)
|||+++||.+||.+||+|++|||+.
T Consensus 225 Pdf~~~dl~~al~~y~~R~RRfG~~ 249 (249)
T PRK14831 225 PDFDRDEFHKALLDYQSRERRFGGV 249 (249)
T ss_pred CcCCHHHHHHHHHHHHhcccCCCCC
Confidence 9999999999999999999999983
No 9
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=100.00 E-value=4.7e-85 Score=588.42 Aligned_cols=226 Identities=38% Similarity=0.666 Sum_probs=216.3
Q ss_pred CEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 038167 35 NHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLL 114 (292)
Q Consensus 35 ~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~ 114 (292)
+|||||||||||||+++|++ ..+||.+|++++.+++.||.++||++|||||||+|||+||++||++||+|+.+++.+..
T Consensus 1 ~HVAiImDGNrRwAk~~gl~-~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~ 79 (226)
T TIGR00055 1 RHVAIIMDGNGRWAKKKGKP-RAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREV 79 (226)
T ss_pred CcEEEEcCCCHHHHHHCCCC-hhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999 99999999999999999999999999999999999999999999999999999998654
Q ss_pred hhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 038167 115 REDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRN 194 (292)
Q Consensus 115 ~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~~~~~ 194 (292)
. .++++||+|+|+||++.||+++++.++++++.|++|++++||||++||||+||++|++++++++..++
T Consensus 80 ~---~~~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~-------- 148 (226)
T TIGR00055 80 K---ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGK-------- 148 (226)
T ss_pred H---HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCC--------
Confidence 4 46789999999999999999999999999999999999999999999999999999999998875321
Q ss_pred CCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHHHHHHH
Q 038167 195 PQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWA 274 (292)
Q Consensus 195 ~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~df~~a 274 (292)
+++++||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+++||.+|
T Consensus 149 --------------~~~~~i~e~~~~~~L~t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF~~~~l~~a 214 (226)
T TIGR00055 149 --------------LLPEDIDEETLNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELA 214 (226)
T ss_pred --------------CChhhCCHHHHHHhhccCCCCCCCEEEeCCCcccccCcHHHHHhceEEEECCCCCCcCCHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhh
Q 038167 275 ILNFQRHHAYLE 286 (292)
Q Consensus 275 l~~yq~r~~r~g 286 (292)
|.+||+|++|||
T Consensus 215 l~~y~~R~RRfG 226 (226)
T TIGR00055 215 ILDFQFRHRRFG 226 (226)
T ss_pred HHHHhccCccCC
Confidence 999999999998
No 10
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.7e-85 Score=594.77 Aligned_cols=237 Identities=28% Similarity=0.504 Sum_probs=224.3
Q ss_pred HhhcCCCCCCCEEEEEecCCchHHHhcC----CCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHH
Q 038167 25 FGILSVGVIPNHIAFILDGNRRFAKKHN----LAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIR 100 (292)
Q Consensus 25 ~~~l~~~~iP~HIaiImDGNRR~A~~~g----l~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~ 100 (292)
..-|+.+++|+|||||||||||||+++| ++ ...||..|++++.+++.||.++||++|||||||+|||+||++||+
T Consensus 10 ~~~~~~~~~P~HVaiImDGNrRwAk~~~~~~gl~-~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~ 88 (250)
T PRK14840 10 ENFPSLQSLPRHVAIIMDGNRRWYRKHEQFCQKR-AISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVA 88 (250)
T ss_pred hhhcccCCCCCeEEEEcCCChHHHhhCCCccCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHH
Confidence 3456889999999999999999999976 78 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHH
Q 038167 101 YLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCL 180 (292)
Q Consensus 101 ~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~ 180 (292)
.||+++.+++.+... .+.++||+|+|+||+++||++++++++++|+.|++|++++||||++||||+||++|++++++
T Consensus 89 ~Lm~L~~~~l~~~~~---~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~ 165 (250)
T PRK14840 89 ELFSLFNSQLDSQLP---YLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQ 165 (250)
T ss_pred HHHHHHHHHHHHHHH---HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHHHHH
Confidence 999999999987654 47788999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhccCCCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecC
Q 038167 181 VTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPA 260 (292)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~ 260 (292)
++..++ +++++|+++.|+++|++.++||||||||||||+|||||||||++||||||++
T Consensus 166 ~v~~~~----------------------~~~~~i~~~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~ 223 (250)
T PRK14840 166 DLANKK----------------------ISSDDISEELISSYLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTD 223 (250)
T ss_pred HHHhCC----------------------CChhhCCHHHHHHHhccCCCCCCCEEEeCCCCcccccchHHhHhceeEEECC
Confidence 875321 4678899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhhhh
Q 038167 261 ALWPEIGLRHLIWAILNFQRHHAYLEK 287 (292)
Q Consensus 261 ~~WPdf~~~df~~al~~yq~r~~r~gk 287 (292)
++||||+++||.+||.+||+|.+||||
T Consensus 224 ~lWPdf~~~df~~al~~y~~R~RrfG~ 250 (250)
T PRK14840 224 VLWPDFTPNDLLEAIKTYQQRSRRGGK 250 (250)
T ss_pred CCCCcCCHHHHHHHHHHHhcccCcCCC
Confidence 999999999999999999999999997
No 11
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.8e-85 Score=598.42 Aligned_cols=241 Identities=32% Similarity=0.541 Sum_probs=228.0
Q ss_pred HhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 25 FGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 25 ~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
..+++.+++|+|||||||||||||+++|++ ...||..|++++.+++.||.++||++||||+||+|||+||++||+.||+
T Consensus 6 ~~~~~~~~~P~HVAiImDGNrRwA~~~gl~-~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~ 84 (253)
T PRK14836 6 QMIPANENIPRHIAIIMDGNGRWAKRRGKP-RVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALME 84 (253)
T ss_pred ccccccCCCCCeEEEecCCcHHHHHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHH
Confidence 346788999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhc
Q 038167 105 LMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKK 184 (292)
Q Consensus 105 l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~ 184 (292)
++.+++.+... .+.++||+|+|+||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++..
T Consensus 85 l~~~~l~~~~~---~~~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~~~ 161 (253)
T PRK14836 85 LFLKALDREVD---KLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAA 161 (253)
T ss_pred HHHHHHHHHHH---HHHHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 99999987654 477899999999999999999999999999999999999999999999999999999999988653
Q ss_pred cCCCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCC
Q 038167 185 TQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWP 264 (292)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WP 264 (292)
+. +++++||++.|+++|++.++||||||||||||+|||||||||++||||||++++||
T Consensus 162 g~----------------------l~~~~i~e~~i~~~L~~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWP 219 (253)
T PRK14836 162 GK----------------------LAPDEIDEALLAQHLALADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWP 219 (253)
T ss_pred CC----------------------CChHhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCChHHHHhheEEEeCCCCCC
Confidence 21 46788999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhhhcc
Q 038167 265 EIGLRHLIWAILNFQRHHAYLEKKKKQ 291 (292)
Q Consensus 265 df~~~df~~al~~yq~r~~r~gk~~~~ 291 (292)
||+++||.+||.+||+|++|||+...|
T Consensus 220 df~~~d~~~aL~~y~~R~RRfG~~~~~ 246 (253)
T PRK14836 220 DFDAQELQQALEDYASRERRFGKTSAQ 246 (253)
T ss_pred cCCHHHHHHHHHHHHccCccCCCchhh
Confidence 999999999999999999999997554
No 12
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1e-84 Score=593.19 Aligned_cols=236 Identities=28% Similarity=0.479 Sum_probs=223.6
Q ss_pred hcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHH
Q 038167 27 ILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLM 106 (292)
Q Consensus 27 ~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~ 106 (292)
.+..+++|+|||||||||||||+++|++ ...||..|++++.+++.||.++||++|||||||+|||+||++||+.||+++
T Consensus 8 ~~~~~~~P~HvaiImDGNrRwAk~~g~~-~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~ 86 (243)
T PRK14829 8 DIPKNKLPRHIAVVMDGNGRWATQRGLK-RTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFS 86 (243)
T ss_pred ccccCCCCCeEEEecCCCHHHHHHCCCC-hhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHH
Confidence 4567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccC
Q 038167 107 LEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQ 186 (292)
Q Consensus 107 ~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~ 186 (292)
.+++..... .+.++||||+|+||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++..+.
T Consensus 87 ~~~l~~~~~---~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~g~ 163 (243)
T PRK14829 87 RDVIHRRRE---QMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGK 163 (243)
T ss_pred HHHHHHHHH---HHHHcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCC
Confidence 999977543 36788999999999999999999999999999999999999999999999999999999998875321
Q ss_pred CCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCC
Q 038167 187 PQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEI 266 (292)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf 266 (292)
+++++|+++.|+++|++.++||||||||||||+|||||||||++||||||++++||||
T Consensus 164 ----------------------~~~~~i~e~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf 221 (243)
T PRK14829 164 ----------------------ISGDRVTEKMISDHLYNPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDF 221 (243)
T ss_pred ----------------------CChHhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCchHHhHhheEEEeCCCCCCcC
Confidence 4678899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhhh
Q 038167 267 GLRHLIWAILNFQRHHAYLEKK 288 (292)
Q Consensus 267 ~~~df~~al~~yq~r~~r~gk~ 288 (292)
+++||.+||.+||+|++|||+.
T Consensus 222 ~~~d~~~al~~y~~r~rRfG~~ 243 (243)
T PRK14829 222 GRDDLWAAIDEYAHRDRRFGGV 243 (243)
T ss_pred CHHHHHHHHHHHhccCccCCCC
Confidence 9999999999999999999973
No 13
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.9e-84 Score=587.52 Aligned_cols=230 Identities=33% Similarity=0.569 Sum_probs=217.9
Q ss_pred CCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHH
Q 038167 32 VIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKME 111 (292)
Q Consensus 32 ~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~ 111 (292)
++|+|||||||||||||+++|++ ...||.+|++++.+++.||.++||++|||||||+|||+||++||+.||+++.+++.
T Consensus 2 ~~P~HVaiImDGNrRwAk~~g~~-~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~ 80 (233)
T PRK14841 2 RIPQHVAIIMDGNGRWAKKRGLP-RIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMID 80 (233)
T ss_pred CCCCEEEEEccCCHHHHHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999 99999999999999999999999999999999999999999999999999999997
Q ss_pred HHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCCC
Q 038167 112 FLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFK 191 (292)
Q Consensus 112 ~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~~ 191 (292)
+... .+.++||+|+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++..+
T Consensus 81 ~~~~---~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~------ 151 (233)
T PRK14841 81 REME---LLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQG------ 151 (233)
T ss_pred HHHH---HHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcC------
Confidence 6543 3778899999999999999999999999999999999999999999999999999999999876431
Q ss_pred CCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHHHH
Q 038167 192 PRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHL 271 (292)
Q Consensus 192 ~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~df 271 (292)
..++|+++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+++||
T Consensus 152 ------------------~~~~i~~~~~~~~L~~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl 213 (233)
T PRK14841 152 ------------------KKIELTEETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDF 213 (233)
T ss_pred ------------------CcCCCCHHHHHHHhccCCCCCCCEEEeCCCCccccCcHHHHhhceeEEECCCCCCcCCHHHH
Confidence 12468889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 038167 272 IWAILNFQRHHAYLEKKK 289 (292)
Q Consensus 272 ~~al~~yq~r~~r~gk~~ 289 (292)
.+||.+||+|++|||+..
T Consensus 214 ~~al~~y~~r~rrfG~~~ 231 (233)
T PRK14841 214 LRAIESYSKRERRFGGLI 231 (233)
T ss_pred HHHHHHHHhcCccCCCCC
Confidence 999999999999999863
No 14
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=7.8e-84 Score=588.23 Aligned_cols=237 Identities=31% Similarity=0.484 Sum_probs=225.2
Q ss_pred hcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHH
Q 038167 27 ILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLM 106 (292)
Q Consensus 27 ~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~ 106 (292)
.++.+++|+|||||||||||||+++|++ ..+||..|++++.+++.||.++||++||||+||+|||+||++||+.||+++
T Consensus 8 ~~~~~~~P~HVAiImDGNrRwAk~~g~~-~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~ 86 (249)
T PRK14834 8 ESDAMSVPRHVAIIMDGNGRWAKARGLP-RAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLL 86 (249)
T ss_pred CCCCCCCCCeEEEEecCchHHHHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHH
Confidence 5678999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccC
Q 038167 107 LEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQ 186 (292)
Q Consensus 107 ~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~ 186 (292)
.+++.+... .+.++||+|+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++..++
T Consensus 87 ~~~l~~~~~---~~~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~~~g~ 163 (249)
T PRK14834 87 RLFIRRDLA---ELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGR 163 (249)
T ss_pred HHHHHHHHH---HHHHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHHHcCC
Confidence 999987543 47789999999999999999999999999999999999999999999999999999999998875321
Q ss_pred CCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCC
Q 038167 187 PQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEI 266 (292)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf 266 (292)
+++++||++.|+++|++.++||||||||||||+|||||||||++||||||++++||||
T Consensus 164 ----------------------~~~~dI~e~~i~~~L~~~~~pdpDLLIRTsGe~RLSnFLlWQ~~yaElyF~~~lWPdf 221 (249)
T PRK14834 164 ----------------------LDPASIDAETISANLDTADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDF 221 (249)
T ss_pred ----------------------CChhhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCChHHhHhheEEEeCCCCCCcC
Confidence 4678899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhh
Q 038167 267 GLRHLIWAILNFQRHHAYLEKKK 289 (292)
Q Consensus 267 ~~~df~~al~~yq~r~~r~gk~~ 289 (292)
+++||++||.+||+|++|||+.-
T Consensus 222 ~~~d~~~al~~y~~r~rRfG~~~ 244 (249)
T PRK14834 222 DKAALEAAIEEYARRERRFGGLA 244 (249)
T ss_pred CHHHHHHHHHHHHhcCccCCCCC
Confidence 99999999999999999999863
No 15
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=7e-84 Score=589.85 Aligned_cols=238 Identities=36% Similarity=0.545 Sum_probs=225.8
Q ss_pred HhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 25 FGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 25 ~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
-..+..+++|+|||||||||||||+++|++ ..+||..|++++.+++.||.++||++|||||||+|||+||++||+.||+
T Consensus 14 ~~~~~~~~~P~HVAiImDGNrRwAk~~gl~-~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~ 92 (251)
T PRK14830 14 DEELDKGNIPKHIAIIMDGNGRWAKKRMLP-RIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMN 92 (251)
T ss_pred ccccCCCCCCCeEEEEecCchHHHHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHH
Confidence 345677899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhc
Q 038167 105 LMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKK 184 (292)
Q Consensus 105 l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~ 184 (292)
++..++.+++. .+.++||+|+|+|++++||+++++.++++|+.|++|++++||||++||||+||++|++++++++..
T Consensus 93 l~~~~l~~~~~---~~~~~~iri~viG~~~~Lp~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v~~ 169 (251)
T PRK14830 93 LPVEFLDKFVP---ELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLD 169 (251)
T ss_pred HHHHHHHHHHH---HHHHcCCEEEEEcChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHHHc
Confidence 99999998765 367889999999999999999999999999999999999999999999999999999999988753
Q ss_pred cCCCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCC
Q 038167 185 TQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWP 264 (292)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WP 264 (292)
++ +++++|+++.|+++|+++++||||||||||||+|||||||||++||||||++++||
T Consensus 170 g~----------------------l~~~~I~e~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWP 227 (251)
T PRK14830 170 GK----------------------LNPEDITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWP 227 (251)
T ss_pred CC----------------------CChHhCCHHHHHHHhCcCCCCCCCEEEeCCCCCcccCChHHHHcceEEEECCCCCC
Confidence 21 46788999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhh
Q 038167 265 EIGLRHLIWAILNFQRHHAYLEKK 288 (292)
Q Consensus 265 df~~~df~~al~~yq~r~~r~gk~ 288 (292)
||+++||.+||.+||+|++|||+.
T Consensus 228 df~~~d~~~aL~~y~~r~rrfG~~ 251 (251)
T PRK14830 228 DFDEEELLKAIKDYQSRQRRFGGV 251 (251)
T ss_pred cCCHHHHHHHHHHHHhcccCCCCC
Confidence 999999999999999999999973
No 16
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=8.1e-84 Score=599.24 Aligned_cols=242 Identities=28% Similarity=0.462 Sum_probs=228.6
Q ss_pred HHHHHHhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHH
Q 038167 20 MRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEI 99 (292)
Q Consensus 20 ~~~~l~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev 99 (292)
....+...|+.+++|+|||||||||||||+++|++ ...||.+|++++.+++.||.++||++|||||||+|||+||++||
T Consensus 54 ~~~~~~~~l~~~~iP~HVAiIMDGNrRwAk~~gl~-~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV 132 (296)
T PRK14827 54 TSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLA-RTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEV 132 (296)
T ss_pred cccccccccCCCCCCCeEEEeccCchHHHHHCCCC-HhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHH
Confidence 34455677888999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHH
Q 038167 100 RYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETC 179 (292)
Q Consensus 100 ~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~ 179 (292)
+.||+++.+++.+... .++++||||+|+||++.||+++++.++++|+.|++|++++||||++||||+||++|+++++
T Consensus 133 ~~Lm~L~~~~l~~~~~---~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i~ 209 (296)
T PRK14827 133 RFLMGFNRDVVRRRRD---NLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIA 209 (296)
T ss_pred HHHHHHHHHHHHHHHH---HHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHH
Confidence 9999999999987543 4778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEec
Q 038167 180 LVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSP 259 (292)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~ 259 (292)
+++..++ +++++|+++.|+++|++.++||||||||||||+|||||||||++||||||+
T Consensus 210 ~~v~~g~----------------------l~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~ayaEl~F~ 267 (296)
T PRK14827 210 REAAAGR----------------------LNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQ 267 (296)
T ss_pred HHHHcCC----------------------CChhhccHHHHHHHhccCCCCCCCEEEecCCcccccCchHhhhhheEEEec
Confidence 9875421 467889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhhhh
Q 038167 260 AALWPEIGLRHLIWAILNFQRHHAYLEK 287 (292)
Q Consensus 260 ~~~WPdf~~~df~~al~~yq~r~~r~gk 287 (292)
+++||||+++||.+||.+||+|++|||+
T Consensus 268 d~lWPdF~~~dl~~al~~y~~R~RRfG~ 295 (296)
T PRK14827 268 DKLWPDYDRRDLWAACEEYASRNRRFGS 295 (296)
T ss_pred CCCCccCCHHHHHHHHHHHhhccccCCC
Confidence 9999999999999999999999999996
No 17
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.7e-83 Score=580.93 Aligned_cols=224 Identities=29% Similarity=0.463 Sum_probs=212.9
Q ss_pred CCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHH
Q 038167 32 VIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKME 111 (292)
Q Consensus 32 ~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~ 111 (292)
.-|+|||||||||||||+++|++ ..+||..|++++.+++.||.++||++|||||||+|||+||++||+.||+++.+++.
T Consensus 8 ~~P~HVAiImDGNrRwAk~~gl~-~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~ 86 (239)
T PRK14839 8 RSGLHVAIIMDGNGRWATARGLP-RLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLR 86 (239)
T ss_pred CCCCEEEEEcCCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999 99999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCCC
Q 038167 112 FLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFK 191 (292)
Q Consensus 112 ~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~~ 191 (292)
+.+. .+.++||+|+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|+++++
T Consensus 87 ~~~~---~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~~~------------ 151 (239)
T PRK14839 87 NETE---RLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAKAL------------ 151 (239)
T ss_pred HHHH---HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHhc------------
Confidence 7654 3778999999999999999999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHHHH
Q 038167 192 PRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHL 271 (292)
Q Consensus 192 ~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~df 271 (292)
.+++||++.|+++|+ +++||||||||||||+|||||||||++||||||++++||||+++||
T Consensus 152 ------------------~~~~i~e~~~~~~l~-~~~p~~DLlIRTsGE~RLSnFLlWQ~ayael~F~d~lWPdF~~~d~ 212 (239)
T PRK14839 152 ------------------GPEGLSREAFSDLLT-GDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDL 212 (239)
T ss_pred ------------------CcccCCHHHHHHHhc-cCCCCCCEEEeCCCccccccchhhhhhheEEEEccCCCccCCHHHH
Confidence 235688899999997 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhc
Q 038167 272 IWAILNFQRHHAYLEKKKK 290 (292)
Q Consensus 272 ~~al~~yq~r~~r~gk~~~ 290 (292)
.+||.+||+|++|||+.|-
T Consensus 213 ~~ai~~yq~R~RrfG~~~~ 231 (239)
T PRK14839 213 AAAVADFHGRERRFGGLPA 231 (239)
T ss_pred HHHHHHHhccccccCCCCC
Confidence 9999999999999999763
No 18
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=7.6e-82 Score=567.31 Aligned_cols=258 Identities=49% Similarity=0.834 Sum_probs=241.0
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeec
Q 038167 9 ESKLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFS 88 (292)
Q Consensus 9 ~~~~~~~~~~~~~~~l~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS 88 (292)
.||+......+.++. +.+..||+|+||||||||||||||++|++ ..+||++|+.+|.++++||.++||++||+||||
T Consensus 14 ~~~~~~~~~~~~~~~--~~~~~g~~P~HVaFIMDGNRR~AKk~~L~-~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFS 90 (271)
T KOG1602|consen 14 SSWIDEALQSLMEKF--RLLARGPMPRHVAFIMDGNRRYAKKRGLE-TSEGHEAGFEALKEILELCKELGIKEVTVFAFS 90 (271)
T ss_pred hhhHHHHHHHHHHHH--HHHhcCCCcceeEEEecCchHHHHhcCCC-cccchHHHHHHHHHHHHHHHHcCCcEEEEEEEe
Confidence 457777777766665 45677999999999999999999999999 899999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCH
Q 038167 89 IDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSST 168 (292)
Q Consensus 89 ~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr 168 (292)
+|||+||++||+.||+|+.++++.+......++++||||+|+||+++||+++++.+.++|+.|++|++.+||||++|+||
T Consensus 91 ieNFkRs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr 170 (271)
T KOG1602|consen 91 IENFKRSPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSR 170 (271)
T ss_pred hhhhCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcH
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccc
Q 038167 169 EEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLL 248 (292)
Q Consensus 169 ~EIv~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLl 248 (292)
+||++||+.++..++.+ + ..+ +|++..++++||++..|.|||+||||||.||||||+
T Consensus 171 ~EI~~a~r~~~~~~~~g----------------~------~~~-~i~~~~~e~~l~~~~~p~pDLlIRTSGe~RLSnFll 227 (271)
T KOG1602|consen 171 DEILHAVRGIVKRVKDG----------------D------IDV-DINLSDIEECLYTSDVPHPDLLIRTSGEDRLSNFLL 227 (271)
T ss_pred HHHHHHHHHHHHhhhcC----------------C------Ccc-chhhHHHHHhhccCCCCCCCEEEEcCCcchHHHHHH
Confidence 99999999999887532 1 122 688889999999999999999999999999999999
Q ss_pred cccCceeEEecCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhccC
Q 038167 249 WQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEKKKKQL 292 (292)
Q Consensus 249 WQs~ysEl~F~~~~WPdf~~~df~~al~~yq~r~~r~gk~~~~~ 292 (292)
||+++|+|+|.+.+||||+++.|+.||..||.+++++||.+|+.
T Consensus 228 WQ~s~t~l~f~~~LWPefg~~~l~~aiLkfq~~~~~l~~~~~~~ 271 (271)
T KOG1602|consen 228 WQTSETELFFADALWPEFGLWHLFWAILKFQRNQSYLGKRKKLH 271 (271)
T ss_pred HHhcccEEeeccccCccccHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999873
No 19
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=100.00 E-value=1.3e-81 Score=586.80 Aligned_cols=263 Identities=28% Similarity=0.450 Sum_probs=223.7
Q ss_pred HHHHHHHHHhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCH
Q 038167 17 GVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQ 96 (292)
Q Consensus 17 ~~~~~~~l~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~ 96 (292)
..++++++.++|+.||+|+|||||||||||||+++|++ ..+||.+|++++.+++.||.++||++|||||||+|||+||+
T Consensus 3 ~~~~~~~~~~~l~~g~iP~HVAiIMDGNrRwAk~~gl~-~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~ 81 (322)
T PTZ00349 3 LNIIERFITSLLRDFINIKHISIIMDGNRRFAKEKGLH-SAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSP 81 (322)
T ss_pred hHHHHHHHHHHhhcCCCCCcEEEEcCCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCH
Confidence 35788999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHH----
Q 038167 97 NEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIV---- 172 (292)
Q Consensus 97 ~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv---- 172 (292)
+||++||+|+..++.+.......+.++||||||+|+++.||+++++.++++|+.|++|++++||||++||||+||+
T Consensus 82 ~EV~~Lm~L~~~~l~~~~~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YggR~EI~~~v~ 161 (322)
T PTZ00349 82 EEIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKF 161 (322)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecCCCHHHHHHhhc
Confidence 9999999999888866421123467899999999999999999999999999999999999999999999999999
Q ss_pred ------HHHHHHHHHhhcc-------CCC-CCCCC-----CCCCCCc-----cchh------------hhcccCcCCCCH
Q 038167 173 ------HTVEETCLVTKKT-------QPQ-AFKPR-----NPQNDVT-----EDAD------------EHKNKEQNTIKL 216 (292)
Q Consensus 173 ------~a~~~l~~~~~~~-------~~~-~~~~~-----~~~~~~~-----~~~~------------e~~~~~~~~It~ 216 (292)
+|++++++++... +|. .|... ..|.... +.++ ....+++++||+
T Consensus 162 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e~~i~~ 241 (322)
T PTZ00349 162 NPNLYFDTYKNLLEEKKILCGSNILTDPIKEGTFAIPDDEDECDYLDHELENERIDLDLKFDGDCICGEKSFLNEEQIEI 241 (322)
T ss_pred ccchHHHHHHHHHHHhccccccccccccccccccccchhcccccccccccccccccccccccccccccccccCChhhccH
Confidence 7999998773110 000 00000 0000000 0000 000145677888
Q ss_pred HHHHhhhhcCCCCCCcEEEeecCCcccCCcccccc-CceeEEecCCCCCCCCHHHHHHHHHHHHH
Q 038167 217 VDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQS-SNCMLYSPAALWPEIGLRHLIWAILNFQR 280 (292)
Q Consensus 217 ~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs-~ysEl~F~~~~WPdf~~~df~~al~~yq~ 280 (292)
+.|+++|+++++||||||||||||+|||||||||+ +||||||++++||||+.+||.+||.+||.
T Consensus 242 ~~~~~~Lyt~~~PdpDLlIRTSGE~RLSNFLLWQ~aaysElyF~d~lWPdF~~~d~~~ai~~yq~ 306 (322)
T PTZ00349 242 VNYHKKLLTSDLPPPNILIRTSGEKRLSDFMLYQISEFTEIYFINEYWPIFNFLQFIYIILHYTI 306 (322)
T ss_pred HHHHHhccCCCCCCCCEEEECCCcccccccHHhhcccceEEEECCCCCCCCCHHHHHHHHHHHhh
Confidence 88999999999999999999999999999999999 59999999999999999999999999987
No 20
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=100.00 E-value=3.3e-81 Score=562.93 Aligned_cols=221 Identities=42% Similarity=0.757 Sum_probs=211.1
Q ss_pred CCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHH
Q 038167 34 PNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFL 113 (292)
Q Consensus 34 P~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l 113 (292)
|+|||||||||||||+++|++ ...||.+|++++.+++.||.++||++|||||||+|||+||++||++||+++.++++++
T Consensus 1 P~HvaiImDGNrRwA~~~gl~-~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~ 79 (221)
T cd00475 1 PKHVAFIMDGNRRWAKQRGMD-RIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRI 79 (221)
T ss_pred CCeEEEecCCCHHHHHHCCCC-hhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999 9999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCCCCC
Q 038167 114 LREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPR 193 (292)
Q Consensus 114 ~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~~~~ 193 (292)
+.. +.++||+|||+||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++.+..+.
T Consensus 80 ~~~---~~~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~~~~~~~~------- 149 (221)
T cd00475 80 LKE---LEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKVKAGK------- 149 (221)
T ss_pred HHH---HHHCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcCC-------
Confidence 753 5678999999999999999999999999999999999999999999999999999999998865321
Q ss_pred CCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHHHHHH
Q 038167 194 NPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIW 273 (292)
Q Consensus 194 ~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~df~~ 273 (292)
+++++|+++.|+++|++.++||||||||||||+|||||||||++||||||++++||||+++||.+
T Consensus 150 ---------------~~~~~i~~~~~~~~L~~~~~p~pDLlIRTsGe~RLSnFLlWQ~~yaEl~F~~~lWPdf~~~~~~~ 214 (221)
T cd00475 150 ---------------LTPEDIDESTLNKHLYTHDSPDPDLLIRTSGEQRLSNFLLWQSAYSELYFSDVLWPDFTFWDFLR 214 (221)
T ss_pred ---------------CChHhCCHHHHHHhhCcCCCCCCCEEEecCCccccccchHhhHhheeEEECCCCCCcCCHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 038167 274 AILNFQR 280 (292)
Q Consensus 274 al~~yq~ 280 (292)
||.+||+
T Consensus 215 al~~y~~ 221 (221)
T cd00475 215 ALLDYQR 221 (221)
T ss_pred HHHHHhC
Confidence 9999984
No 21
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=100.00 E-value=2.3e-79 Score=557.37 Aligned_cols=231 Identities=39% Similarity=0.674 Sum_probs=222.7
Q ss_pred CCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHH
Q 038167 32 VIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKME 111 (292)
Q Consensus 32 ~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~ 111 (292)
++|+|||||||||||||+++|++ ...||..|++++.++++||.++||++||+|+||||||+||++||++||+++.+++.
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~-r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~ 93 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLP-RIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALR 93 (245)
T ss_pred ccccceEEEecCChHHHHhCCCC-hhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCCC
Q 038167 112 FLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFK 191 (292)
Q Consensus 112 ~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~~ 191 (292)
+... .+++++|+++++|+++.||+++++.++.+|+.|++|++++||+|++||||+||++|++++++++..+.
T Consensus 94 ~~~~---~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v~~g~----- 165 (245)
T COG0020 94 EELK---KLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGK----- 165 (245)
T ss_pred HHHH---HHhhcCeEEEEEeccccCCHHHHHHHHHHHHhccCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHcCC-----
Confidence 8873 47799999999999999999999999999999999999999999999999999999999999976421
Q ss_pred CCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHHHH
Q 038167 192 PRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHL 271 (292)
Q Consensus 192 ~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~df 271 (292)
++|++||++.|+++|++.++||||||||||||+|||||||||++||||||+|++||||+..||
T Consensus 166 -----------------l~~~~I~e~~i~~~L~~~~~pdpDLlIRTsGe~RlSnFllWQ~aYsElyF~d~lWPdf~~~d~ 228 (245)
T COG0020 166 -----------------LSPEDIDEELISSHLYTSGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRREDL 228 (245)
T ss_pred -----------------CChHHcCHHHHHHhhcccCCCCCCEEEeCCCcccccccHHHHHHhCeEEeccccCCCCCHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhh
Q 038167 272 IWAILNFQRHHAYLEKK 288 (292)
Q Consensus 272 ~~al~~yq~r~~r~gk~ 288 (292)
.+||.+||+|++|||+.
T Consensus 229 ~~ai~~yq~R~rrfG~~ 245 (245)
T COG0020 229 LRAIRDYQKRERRFGRV 245 (245)
T ss_pred HHHHHHHHhccccccCC
Confidence 99999999999999974
No 22
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.7e-79 Score=551.06 Aligned_cols=223 Identities=27% Similarity=0.454 Sum_probs=213.3
Q ss_pred ecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhcccc
Q 038167 41 LDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFL 120 (292)
Q Consensus 41 mDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~ 120 (292)
||||||||+++|++ ..+||..|++++.+++.||.++||++|||||||+|||+||++||+.||+++.+++...+. .+
T Consensus 1 mDGNrRwAk~~g~~-~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~---~~ 76 (229)
T PRK10240 1 MDGNGRWAKKQGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVK---SL 76 (229)
T ss_pred CCCcHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHH---HH
Confidence 89999999999999 999999999999999999999999999999999999999999999999999999987654 36
Q ss_pred ccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 038167 121 SKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVT 200 (292)
Q Consensus 121 ~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 200 (292)
+++||+|+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++..++
T Consensus 77 ~~~~i~vr~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~g~-------------- 142 (229)
T PRK10240 77 HRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQGN-------------- 142 (229)
T ss_pred HHCCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHHHcCC--------------
Confidence 788999999999999999999999999999999999999999999999999999999998876421
Q ss_pred cchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHHHHHHHHHHHHH
Q 038167 201 EDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQR 280 (292)
Q Consensus 201 ~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~df~~al~~yq~ 280 (292)
+++++|+++.|+++|++.++||||||||||||+||||||||||+||||||++++||||+++||.+||.+||+
T Consensus 143 --------~~~~~i~e~~i~~~L~t~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~al~~y~~ 214 (229)
T PRK10240 143 --------LQPDQIDEEMLNQHICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFAN 214 (229)
T ss_pred --------CChhhCCHHHHHHHhccCCCCCCCEEEeCCCcccccCChHHHHhheEEEECCCCCCcCCHHHHHHHHHHHHc
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhh
Q 038167 281 HHAYLEKKK 289 (292)
Q Consensus 281 r~~r~gk~~ 289 (292)
|++|||+.+
T Consensus 215 r~rrfG~~~ 223 (229)
T PRK10240 215 RERRFGGTE 223 (229)
T ss_pred cCccCCCCC
Confidence 999999975
No 23
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=100.00 E-value=2e-78 Score=546.80 Aligned_cols=223 Identities=39% Similarity=0.679 Sum_probs=195.7
Q ss_pred EecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccc
Q 038167 40 ILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGF 119 (292)
Q Consensus 40 ImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~ 119 (292)
|||||||||+++|++ ..+||..|++++.++++||.++||++|||||||+|||+||++||++||+++.+++.+++.+...
T Consensus 1 ImDGNrRwA~~~g~~-~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~ 79 (223)
T PF01255_consen 1 IMDGNRRWAKKRGLP-RSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNF 79 (223)
T ss_dssp EE--HHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCcCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcch
Confidence 899999999999999 9999999999999999999999999999999999999999999999999999999998876433
Q ss_pred cccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 038167 120 LSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDV 199 (292)
Q Consensus 120 ~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~~~~~~~~~~ 199 (292)
.++||+|+|+||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++.+..++
T Consensus 80 -~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~~~~~------------- 145 (223)
T PF01255_consen 80 -HKNGIRVRVIGDLSLLPEELQKAIAEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEVQSGK------------- 145 (223)
T ss_dssp --HTTEEEEEES-GGGS-HHHHHHHHHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHHHTTS-------------
T ss_pred -hhcCeeEEEEeccCcCCHHHHHHHHHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhhccCc-------------
Confidence 469999999999999999999999999999999999999999999999999999999999876421
Q ss_pred ccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHHHHHHHHHHHH
Q 038167 200 TEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQ 279 (292)
Q Consensus 200 ~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~df~~al~~yq 279 (292)
+++++||++.|+++|+++++| ||||||||||+||||||||||+||||||++++||||++.||..||.+||
T Consensus 146 ---------~~~~~i~~~~i~~~L~~~~~P-pDLlIRtsGe~RLS~FllWq~~y~El~f~~~~WPdf~~~d~~~al~~y~ 215 (223)
T PF01255_consen 146 ---------LSPEDIDEELISSHLYTPDLP-PDLLIRTSGEQRLSNFLLWQSAYAELYFTDTLWPDFSFWDFLRALLEYQ 215 (223)
T ss_dssp ---------SGGGG-SHHHHHHTSTTTTS---SEEEEETT--C-TTSSTTTTTT-EEEEESSSGGG--HHHHHHHHHHHH
T ss_pred ---------cccccCCHHHHHhhccccCCC-CCEEEEeCCCcccCCCeEEeecCcEEEECCCCCccCCHHHHHHHHHHHH
Confidence 477889999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhh
Q 038167 280 RHHAYLEK 287 (292)
Q Consensus 280 ~r~~r~gk 287 (292)
+|++||||
T Consensus 216 ~r~rrfGk 223 (223)
T PF01255_consen 216 RRERRFGK 223 (223)
T ss_dssp HCHHHTT-
T ss_pred hhhccCCC
Confidence 99999998
No 24
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=99.83 E-value=2.6e-20 Score=169.10 Aligned_cols=206 Identities=15% Similarity=0.171 Sum_probs=147.0
Q ss_pred hcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHH
Q 038167 27 ILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLM 106 (292)
Q Consensus 27 ~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~ 106 (292)
..+..+.|+|+|+|.--++ +| .-.+....+++.||...||+++|+|+.-+ -.+|...++. +.+
T Consensus 58 ~~~L~k~p~hl~lvI~~v~------------~~-~~~~~da~~~v~w~v~~gik~~~lyd~~g-~~~r~~~~~~---~~I 120 (263)
T KOG2818|consen 58 FSSLKKGPKHLALVIHPVE------------DG-EGSFSDASSIVFWAVTVGIKYLSLYDRVG-IKKRNMPVVR---DEI 120 (263)
T ss_pred hhhhhhcchhheEEEEecc------------cC-CceehhhHHHHHHHHHhccceeeHHHHHH-HhccCcHHHH---HHH
Confidence 4456788999997666432 22 12356788999999999999999998653 2466666443 333
Q ss_pred HHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccC
Q 038167 107 LEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQ 186 (292)
Q Consensus 107 ~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~ 186 (292)
.+.+.... + .+.- .+.+. ..+.++ +..-+++..+.+...+.-+||.-|++.++.+...+...
T Consensus 121 ~s~la~~~---g-~~~~--~~~~~---~~~snD--------~~nQ~~~~~L~~~~~s~~DGr~~i~Dl~r~i~~~~~~~- 182 (263)
T KOG2818|consen 121 ISHLANYF---G-LDEP--TLAVT---IKLSND--------EPNQEDKCKLGTHAISLEDGRMIIIDLTRLIQELCYLY- 182 (263)
T ss_pred HHhhhhhc---C-CCCC--ccccc---CCCCCC--------CcccccccchhheecccccccHHHHHHHHHHHHHHHHH-
Confidence 33322211 1 1110 11110 011110 11113456788888899999988888888887664321
Q ss_pred CCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCC
Q 038167 187 PQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEI 266 (292)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf 266 (292)
+...++.++|++.+++.|.....|||||+|++|....|+||+|||++.|||+..+.+ -.+
T Consensus 183 -------------------~~~~~~~~itve~vds~l~e~~~PePdLll~fg~~~~l~GfpPWhiRltEf~~~p~~-~~~ 242 (263)
T KOG2818|consen 183 -------------------ELYRSETDITVETVDSELKEFVEPEPDLLLFFGPVLVLQGFPPWHIRLTEFTRKPSH-LCT 242 (263)
T ss_pred -------------------HHhCCCccccHHHHHHHHHhcCCCCcceeeeeccchhhcCCCCceeEEEEeEecccc-Ccc
Confidence 011366789999999999877899999999999999999999999999999999988 489
Q ss_pred CHHHHHHHHHHHHHHhhhhhh
Q 038167 267 GLRHLIWAILNFQRHHAYLEK 287 (292)
Q Consensus 267 ~~~df~~al~~yq~r~~r~gk 287 (292)
++++|.++|++|++|++|+||
T Consensus 243 ~~e~f~~~lr~ya~ce~RvGk 263 (263)
T KOG2818|consen 243 SYETFFRALRKYADCEQRVGK 263 (263)
T ss_pred cHHHHHHHHHHHhhhhhhcCC
Confidence 999999999999999999997
No 25
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=73.31 E-value=23 Score=28.97 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCC--CHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLV--SEPI 140 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~l--p~~~ 140 (292)
......+++.-|.+.|...|-++. +|+.- ..++|-.....+++++ +-.|++++-++||.+.. ++++
T Consensus 20 ~~qdalDLi~~~~~~~~~~i~l~~---~~l~~------dFF~L~TglAGeiLQK---f~NY~iklAivGD~s~~~~S~~l 87 (113)
T PF13788_consen 20 DEQDALDLIGTAYEHGADRIILPK---EALSE------DFFDLRTGLAGEILQK---FVNYRIKLAIVGDFSAYATSKSL 87 (113)
T ss_pred chhHHHHHHHHHHHcCCCEEEEEh---HHCCH------HHHHhhcchHHHHHHH---HHhhceeEEEEEcccccccchhH
Confidence 456778899999999999999986 33221 3444433333444442 44689999999998877 5666
Q ss_pred HHHHHHHHHHcCCCCeEEEEEE
Q 038167 141 RVTAEKVMRATSKNTRIVILIC 162 (292)
Q Consensus 141 ~~~i~~~e~~T~~~~~~~lni~ 162 (292)
++-+. +.|.+-+++++
T Consensus 88 ~dfi~------EsN~G~~~~F~ 103 (113)
T PF13788_consen 88 RDFIY------ESNRGNHFFFV 103 (113)
T ss_pred HHHHH------HhcCCCeEEEE
Confidence 55543 22455566664
No 26
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=72.70 E-value=74 Score=29.45 Aligned_cols=105 Identities=10% Similarity=0.136 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-.+.+.++++|+.+.||.-+.+...+.|.+.=+.+|-..+++...+... ..+.| +.|-.+.=.++..+
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-----------~~~~v-i~gv~~~s~~~~i~ 84 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-----------GRVPV-IAGTGSNATEEAIS 84 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-----------CCCeE-EEeCCCccHHHHHH
Confidence 3577888999999999999999999999999999999999887766531 11222 33332222234444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCC--CHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAYS--STEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y~--Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... ...+-+.-.|- +.++|++-.+.+++.+
T Consensus 85 ~a~~a~~~Ga---d~v~v~pP~y~~~~~~~i~~~~~~i~~~~ 123 (285)
T TIGR00674 85 LTKFAEDVGA---DGFLVVTPYYNKPTQEGLYQHFKAIAEEV 123 (285)
T ss_pred HHHHHHHcCC---CEEEEcCCcCCCCCHHHHHHHHHHHHhcC
Confidence 4444444322 22232222222 4689999999998764
No 27
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=71.93 E-value=79 Score=29.21 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-.+.+.+.++|+.+.||.-+.+...+.|.+.-+.+|-..+++...+... .++.| ++|-...=.++..+
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-----------~~~~v-i~gv~~~st~~~i~ 87 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-----------GRVPV-IAGVGANSTEEAIE 87 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-----------TSSEE-EEEEESSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-----------CceEE-EecCcchhHHHHHH
Confidence 4688899999999999999999999999999999999999887665531 12332 22321111244444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC---CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY---SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y---~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... .. +-+..+| -+.++|++-.+.+++.+
T Consensus 88 ~a~~a~~~Ga---d~-v~v~~P~~~~~s~~~l~~y~~~ia~~~ 126 (289)
T PF00701_consen 88 LARHAQDAGA---DA-VLVIPPYYFKPSQEELIDYFRAIADAT 126 (289)
T ss_dssp HHHHHHHTT----SE-EEEEESTSSSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhcCc---eE-EEEeccccccchhhHHHHHHHHHHhhc
Confidence 5554444322 22 2334444 56889999999998663
No 28
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=67.41 E-value=1e+02 Score=28.23 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-.+.+.++++|+.+.||.-+.+..-+.|-+.-+.+|-..+++...+... ..+.| ++|-...=.++..+
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-----------~~~~v-i~gv~~~~~~~~i~ 83 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-----------GRVPV-IAGVGANSTREAIE 83 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-----------CCCeE-EEecCCccHHHHHH
Confidence 4578899999999999999999999999999999999999887766532 12332 33433222233444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... ...+-+.-.| -+.+++.+-.+.+++.+
T Consensus 84 ~a~~a~~~Ga---d~v~v~pP~y~~~~~~~~~~~~~~ia~~~ 122 (281)
T cd00408 84 LARHAEEAGA---DGVLVVPPYYNKPSQEGIVAHFKAVADAS 122 (281)
T ss_pred HHHHHHHcCC---CEEEECCCcCCCCCHHHHHHHHHHHHhcC
Confidence 4444444322 2222222212 25689999999998763
No 29
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=64.22 E-value=40 Score=28.41 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=62.1
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCC--
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVS-- 137 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp-- 137 (292)
.....+.+.+.++.|..+|++++++...+-.-..... ...-.+.+.+.+++++.. ..++|+++-+-.......
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~l~~l~~~---a~~~gv~i~lE~~~~~~~~~ 140 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDD--TEENWERLAENLRELAEI---AEEYGVRIALENHPGPFSET 140 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSS--HHHHHHHHHHHHHHHHHH---HHHHTSEEEEE-SSSSSSSE
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCC--HHHHHHHHHHHHHHHHhh---hhhhcceEEEecccCccccc
Confidence 5667899999999999999999999854101111111 112334444455554432 345678776655443322
Q ss_pred ----HHHHHHHHHHHHHcCCCCeEEEEEEec--CCCHHHHHHHHHHHHHHh
Q 038167 138 ----EPIRVTAEKVMRATSKNTRIVILICLA--YSSTEEIVHTVEETCLVT 182 (292)
Q Consensus 138 ----~~~~~~i~~~e~~T~~~~~~~lni~~~--Y~Gr~EIv~a~~~l~~~~ 182 (292)
+++...+ +.....+ +.+++-.+ +-...+...+++.+...+
T Consensus 141 ~~~~~~~~~~l---~~~~~~~--~~i~~D~~h~~~~~~~~~~~i~~~~~~i 186 (213)
T PF01261_consen 141 PFSVEEIYRLL---EEVDSPN--VGICFDTGHLIMAGEDPDEAIKRLAPRI 186 (213)
T ss_dssp ESSHHHHHHHH---HHHTTTT--EEEEEEHHHHHHTTHHHHHHHHHHHHGE
T ss_pred hhhHHHHHHHH---hhcCCCc--ceEEEehHHHHHcCCCHHHHHHHhhcce
Confidence 4444333 3333333 44444333 334556777777776653
No 30
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.22 E-value=1e+02 Score=29.57 Aligned_cols=107 Identities=13% Similarity=0.179 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCC-CHHHHH-HHHHHHHHHHHHHhhhccccccCCcEEEEecCC-----C
Q 038167 62 AGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKR-TQNEIR-YLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNL-----G 134 (292)
Q Consensus 62 ~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R-~~~Ev~-~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~-----~ 134 (292)
.-+..|.++++||.+.||. +|-+|.+=+=- +..++. .+...+.+.+.++.. ...++|+|+.+..+- +
T Consensus 49 ~Nl~~l~~~L~~n~~~~I~---f~RisS~l~P~ash~~~~~~~~~~~~~~l~~iG~---~a~~~~iRLS~Hp~qfi~LnS 122 (312)
T TIGR00629 49 ANLRDTMKTLHWNIGHGIP---FYRFSSSIFPFASHPDVGYDLVTFAQKELREIGE---LAKTHQHRLTFHPGQFTQFTS 122 (312)
T ss_pred HHHHHHHHHHHHHHHcCCc---EEecCccccCcCcCchhhhhHHHHHHHHHHHHHH---HHHHcCeEEEECCCccccCCC
Confidence 3467899999999999887 56666544311 112321 222345555554432 456789999887753 2
Q ss_pred CCCHHHHHHHHHHHHHcC-------C----C-CeEEEEEEecCCCHHHHHHH
Q 038167 135 LVSEPIRVTAEKVMRATS-------K----N-TRIVILICLAYSSTEEIVHT 174 (292)
Q Consensus 135 ~lp~~~~~~i~~~e~~T~-------~----~-~~~~lni~~~Y~Gr~EIv~a 174 (292)
.=|+-+.+.++.++.... . . ..+++.+...||+|.+-.+-
T Consensus 123 ~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~gdk~~aler 174 (312)
T TIGR00629 123 PRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAFGNKDTTLAR 174 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCCCCHHHHHHH
Confidence 234455556666553221 1 1 35666666778888874443
No 31
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=62.53 E-value=70 Score=24.70 Aligned_cols=61 Identities=16% Similarity=0.012 Sum_probs=45.5
Q ss_pred CEEEEE--ecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHH
Q 038167 35 NHIAFI--LDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLM 103 (292)
Q Consensus 35 ~HIaiI--mDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm 103 (292)
+||..+ ++-+.. . ....+..=...+.+++..|.+.+++.|.+=++++.++.=|.+++..+|
T Consensus 56 ~~Iih~v~P~~~~~-------~-~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 56 KYIIHAVGPTYNSP-------G-EKNSYEALESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp SEEEEEEEEETTTS-------T-STTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred cceEEEecceeccc-------c-ccccHHHHHHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 777766 664321 1 223445555667777888889999999999999999999999998775
No 32
>PLN02417 dihydrodipicolinate synthase
Probab=62.43 E-value=1.3e+02 Score=27.84 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-.+.+.++++|+.+.||.-+.+-.-+.|-+.-+.+|-..+++...+... ..+.| +.|-.+.=.++..+
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~-----------~~~pv-i~gv~~~~t~~~i~ 87 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-----------GKIKV-IGNTGSNSTREAIH 87 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEECCCccHHHHHH
Confidence 3577899999999999999999999999999999999999887655431 11222 22322222234444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC---CCHHHHHHHHHHHHHH
Q 038167 143 TAEKVMRATSKNTRIVILICLAY---SSTEEIVHTVEETCLV 181 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y---~Gr~EIv~a~~~l~~~ 181 (292)
.++.+++. +.+..+ +..+| -+.++|++--+.+++.
T Consensus 88 ~a~~a~~~---Gadav~-~~~P~y~~~~~~~i~~~f~~va~~ 125 (280)
T PLN02417 88 ATEQGFAV---GMHAAL-HINPYYGKTSQEGLIKHFETVLDM 125 (280)
T ss_pred HHHHHHHc---CCCEEE-EcCCccCCCCHHHHHHHHHHHHhh
Confidence 44444443 223222 23332 2468898888888765
No 33
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=62.25 E-value=1.3e+02 Score=27.65 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHH
Q 038167 64 FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVT 143 (292)
Q Consensus 64 ~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~ 143 (292)
.+.+.+.++|+.+.||.-+-+-..+.|-+.-+.+|...+++...+... ..+.| ++|-...=.++..+.
T Consensus 20 ~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-----------~~~~v-i~gv~~~~~~~~~~~ 87 (284)
T cd00950 20 FDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-----------GRVPV-IAGTGSNNTAEAIEL 87 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EeccCCccHHHHHHH
Confidence 577889999999999999999998889999999999999887765431 11211 233222112344444
Q ss_pred HHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHH
Q 038167 144 AEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLV 181 (292)
Q Consensus 144 i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~ 181 (292)
++.+++. .....+-+--.| -+.+++++-.+.+++.
T Consensus 88 a~~a~~~---G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~ 124 (284)
T cd00950 88 TKRAEKA---GADAALVVTPYYNKPSQEGLYAHFKAIAEA 124 (284)
T ss_pred HHHHHHc---CCCEEEEcccccCCCCHHHHHHHHHHHHhc
Confidence 4444443 222223222223 2578999999999886
No 34
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=61.00 E-value=1.4e+02 Score=27.63 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|+.+.||+-+.+...+.|-+.=+.+|-..+++...+... ..+.| +.|-...=.++..+
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~-----------~~~~v-i~gv~~~~~~~~i~ 87 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN-----------GRVPV-IAGTGSNSTAEAIE 87 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC-----------CCCcE-EeecCCchHHHHHH
Confidence 4578899999999999999999999999999999999999887766532 11221 23322111233344
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC---CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY---SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y---~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. .....+ +..+| -+.++|.+-.+.+++.+
T Consensus 88 ~a~~a~~~---G~d~v~-~~pP~~~~~~~~~i~~~~~~ia~~~ 126 (292)
T PRK03170 88 LTKFAEKA---GADGAL-VVTPYYNKPTQEGLYQHFKAIAEAT 126 (292)
T ss_pred HHHHHHHc---CCCEEE-ECCCcCCCCCHHHHHHHHHHHHhcC
Confidence 44444443 222222 22232 25689999999998764
No 35
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=60.53 E-value=1e+02 Score=27.99 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=44.1
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec
Q 038167 58 AGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG 131 (292)
Q Consensus 58 ~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG 131 (292)
......++.+.+.++.|.++|++.+.+..-+.. ..+.+ .-+..+.+.+++++.. ..++||++.+--
T Consensus 78 ~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~--~~~~~---~~~~~~~~~l~~l~~~---a~~~gi~l~lEn 143 (279)
T cd00019 78 EKREKSIERLKDEIERCEELGIRLLVFHPGSYL--GQSKE---EGLKRVIEALNELIDK---AETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCC--CCCHH---HHHHHHHHHHHHHHHh---ccCCCCEEEEeC
Confidence 356778999999999999999999887543221 11222 3345556666666642 457889887643
No 36
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=59.89 E-value=96 Score=28.95 Aligned_cols=104 Identities=14% Similarity=0.100 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-.+.+.++++|+.+.||.-+.+..-+.|.+.-+.+|-..+++...+... ..+.| ++|-... .++..+
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-----------g~~pv-i~gv~~~-t~~ai~ 90 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-----------GKVPV-YTGVGGN-TSDAIE 90 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCcc-HHHHHH
Confidence 3577889999999999999999999999999999999999887765532 11221 2332222 233334
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. .....+-+.-.| -+.++|.+-.+.+++.+
T Consensus 91 ~a~~a~~~---Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~ 129 (296)
T TIGR03249 91 IARLAEKA---GADGYLLLPPYLINGEQEGLYAHVEAVCEST 129 (296)
T ss_pred HHHHHHHh---CCCEEEECCCCCCCCCHHHHHHHHHHHHhcc
Confidence 44444443 323333333334 36789999999888764
No 37
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=59.85 E-value=71 Score=30.10 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=50.5
Q ss_pred HhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCC---CCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCC-CC-
Q 038167 61 RAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFK---RTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNL-GL- 135 (292)
Q Consensus 61 ~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~---R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~-~~- 135 (292)
..-++.+.+++.||.+.||. +|-+|.+=+- -|.... .+...+.+.+.++. .+..++|+|+.+.-+. ..
T Consensus 41 ~~Nl~~l~~~L~~n~~~~I~---~yRisS~liP~ashp~~~~-~~~~~~~~~l~~iG---~~~~~~~iRls~HP~qf~vL 113 (275)
T PF03851_consen 41 RQNLEDLLRILEYNIAHGIR---FYRISSDLIPLASHPEVGW-DWEEEFAEELAEIG---DLAKENGIRLSMHPDQFTVL 113 (275)
T ss_dssp HHHHHHHHHHHHHHHHTT-----EEE--TTSSTTTTSTT--S--HHHHHHHHHHHHH---HHHHHTT-EEEE---TT--T
T ss_pred HHHHHHHHHHHHHHHHcCCC---EEecCcccCCCCCCccccc-chHHHHHHHHHHHH---HHHHHcCCeEEecCCcceeC
Confidence 44577899999999999854 7888764431 221111 22334455555443 3466799999887653 22
Q ss_pred ---CCHHHHHHHHHHHHH-------cCC---CCeEEEEEEecCCCHHHH
Q 038167 136 ---VSEPIRVTAEKVMRA-------TSK---NTRIVILICLAYSSTEEI 171 (292)
Q Consensus 136 ---lp~~~~~~i~~~e~~-------T~~---~~~~~lni~~~Y~Gr~EI 171 (292)
=|+-+.+++++++-. .-+ ...++|.+...||+|.+=
T Consensus 114 nSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~a 162 (275)
T PF03851_consen 114 NSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEAA 162 (275)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHHH
Confidence 233344456655431 111 146788888889999853
No 38
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=56.78 E-value=1.5e+02 Score=26.69 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=63.0
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecC--C--CC
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGN--L--GL 135 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd--~--~~ 135 (292)
.....+.+.+.++.|..+|++.|.+... ..++..+.+| .++.+.+.+++++.. ..++||++-+--- . ..
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~-~~~~~~~~~~---~~~~~~~~l~~l~~~---a~~~gv~l~iE~~~~~~~~~ 157 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAA-HAGYLTPPNV---IWGRLAENLSELCEY---AENIGMDLILEPLTPYESNV 157 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCC-CCCCCCCHHH---HHHHHHHHHHHHHHH---HHHcCCEEEEecCCCCcccc
Confidence 4556788999999999999999988653 2334334433 334445566665542 3467888765421 1 11
Q ss_pred C--CHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHH
Q 038167 136 V--SEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLV 181 (292)
Q Consensus 136 l--p~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~ 181 (292)
+ |.++...+ ......+-++.+.++-.|..-.++...++.+...
T Consensus 158 ~~t~~~~~~l~---~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~~~r 202 (275)
T PRK09856 158 VCNANDVLHAL---ALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDK 202 (275)
T ss_pred cCCHHHHHHHH---HHcCCCcceeEEeecchhcCCCCHHHHHHHhCCc
Confidence 2 23333322 2222335566666655444334566666655433
No 39
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=51.02 E-value=2.1e+02 Score=26.60 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHh-CCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 64 FLTLMSLLKYCAE-LSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 64 ~~~l~~ii~wc~~-~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
.+.+.++++|+.+ .||.-+.+-..++|.+.=+.+|...+++...+... ..+.| +.|-.+.=.++..+
T Consensus 23 ~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-----------~~~~v-iagvg~~~t~~ai~ 90 (293)
T PRK04147 23 EQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-----------GKVKL-IAQVGSVNTAEAQE 90 (293)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-----------CCCCE-EecCCCCCHHHHHH
Confidence 5778889999999 99999999999999999999999999887766532 11222 23332222234444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCC---CHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAYS---STEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y~---Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... ...+ +.-+|- +.++|++=.+++++.+
T Consensus 91 ~a~~a~~~Ga---d~v~-v~~P~y~~~~~~~l~~~f~~va~a~ 129 (293)
T PRK04147 91 LAKYATELGY---DAIS-AVTPFYYPFSFEEICDYYREIIDSA 129 (293)
T ss_pred HHHHHHHcCC---CEEE-EeCCcCCCCCHHHHHHHHHHHHHhC
Confidence 4444444322 2333 333432 4578988888888764
No 40
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=50.63 E-value=1.4e+02 Score=24.51 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCCCCeEEEEe---eccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHH
Q 038167 65 LTLMSLLKYCAELSVKYVSIYA---FSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIR 141 (292)
Q Consensus 65 ~~l~~ii~wc~~~GI~~vSvYa---fS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~ 141 (292)
.....+-.||.+.|+..+-+|. .|..|+.||. ...|++.+ ....+.+-++-++++|.....
T Consensus 22 ~Q~~~l~~~a~~~g~~i~~~~~D~~~SG~~~~Rp~--l~~ll~~~--------------~~g~vd~vvv~~ldRl~R~~~ 85 (140)
T cd03770 22 NQKAILEEYAKENGLENIRHYIDDGFSGTTFDRPG--FNRMIEDI--------------EAGKIDIVIVKDMSRLGRNYL 85 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEcCCCcCCcCCCHH--HHHHHHHH--------------HcCCCCEEEEeccchhccCHH
Confidence 3456667889999998887874 4777777763 44554432 123466778888888888776
Q ss_pred HHHHHHHHHc
Q 038167 142 VTAEKVMRAT 151 (292)
Q Consensus 142 ~~i~~~e~~T 151 (292)
..+.-++...
T Consensus 86 d~~~~~~~l~ 95 (140)
T cd03770 86 KVGLYMEILF 95 (140)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 41
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=49.33 E-value=40 Score=29.11 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=45.2
Q ss_pred CCCEEEEEecCCchHHHhcCCCccchhHHhHHHH-----HHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHH
Q 038167 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLT-----LMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLML 107 (292)
Q Consensus 33 iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~-----l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~ 107 (292)
-|.|++++.|+.+..=|+.-.| ...+++..... +..+-+++..+||+.+..=. -|=+.++-.+.
T Consensus 50 ~p~~~vv~fD~~~~~fR~~l~p-~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~g----------~EADDvIatla 118 (169)
T PF02739_consen 50 KPDYVVVAFDSKGPTFRKELYP-EYKANRKPMPEELIPQLPYIKELLEALGIPVLEVPG----------YEADDVIATLA 118 (169)
T ss_dssp TEEEEEEEEEBSSCHHHHHCCT-TTTHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEETT----------B-HHHHHHHHH
T ss_pred CCceEEEEecCCCcchHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEecCCC----------CcHHHHHHHHH
Confidence 3899999999877644454556 77777765432 45667778889998776532 46677776665
Q ss_pred HHH
Q 038167 108 EKM 110 (292)
Q Consensus 108 ~~l 110 (292)
...
T Consensus 119 ~~~ 121 (169)
T PF02739_consen 119 KKA 121 (169)
T ss_dssp HHH
T ss_pred hhh
Confidence 554
No 42
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=47.83 E-value=42 Score=35.25 Aligned_cols=57 Identities=19% Similarity=0.408 Sum_probs=45.2
Q ss_pred HHHHHHhCCCCeEEE-EeeccCC-CCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCC
Q 038167 70 LLKYCAELSVKYVSI-YAFSIDN-FKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNL 133 (292)
Q Consensus 70 ii~wc~~~GI~~vSv-YafS~eN-~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~ 133 (292)
+-.|+.++|.+.||| |.+-.|| |-|+-+||-+-+.-+ +++...+..-|=||...||.
T Consensus 419 Lr~Wa~aL~cPiiSVdYSLAPEaPFPRaleEv~fAYcW~-------inn~allG~TgEriv~aGDS 477 (880)
T KOG4388|consen 419 LRSWAQALGCPIISVDYSLAPEAPFPRALEEVFFAYCWA-------INNCALLGSTGERIVLAGDS 477 (880)
T ss_pred HHHHHHHhCCCeEEeeeccCCCCCCCcHHHHHHHHHHHH-------hcCHHHhCcccceEEEeccC
Confidence 568999999999999 8888898 899999997665543 45555555667788888885
No 43
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=46.69 E-value=2.4e+02 Score=26.09 Aligned_cols=104 Identities=14% Similarity=0.074 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhC-CCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHH
Q 038167 63 GFLTLMSLLKYCAEL-SVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIR 141 (292)
Q Consensus 63 G~~~l~~ii~wc~~~-GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~ 141 (292)
-.+.+.++++|+.+. |+.-+.+-..++|-+.-+.+|-..+++...+... ..+.| ++|-...=.++..
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~-----------~~~~v-iagv~~~~~~~ai 86 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK-----------GKVTL-IAHVGSLNLKESQ 86 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-----------CCCeE-EeccCCCCHHHHH
Confidence 357788899999999 9999999999999999999999999887765531 12222 2343222223444
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCC---CHHHHHHHHHHHHHHh
Q 038167 142 VTAEKVMRATSKNTRIVILICLAYS---STEEIVHTVEETCLVT 182 (292)
Q Consensus 142 ~~i~~~e~~T~~~~~~~lni~~~Y~---Gr~EIv~a~~~l~~~~ 182 (292)
+.++.+++.. ....+ +..+|- +.++|++=.+.+++.+
T Consensus 87 ~~a~~a~~~G---ad~v~-~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 87 ELAKHAEELG---YDAIS-AITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred HHHHHHHHcC---CCEEE-EeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4444444432 23333 333433 5689999999998765
No 44
>PRK09482 flap endonuclease-like protein; Provisional
Probab=45.83 E-value=89 Score=29.08 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=40.0
Q ss_pred HHHhhcCCCCCCCEEEEEecCCch---HHHhcCCCccchhHH-----hHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCC
Q 038167 23 CVFGILSVGVIPNHIAFILDGNRR---FAKKHNLAGEGAGHR-----AGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKR 94 (292)
Q Consensus 23 ~l~~~l~~~~iP~HIaiImDGNRR---~A~~~gl~~~~~Gh~-----~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R 94 (292)
.+.+++... -|.||+|+.|+.++ | |..=.| ...+++ .-...+..+-+.+..+||.+++.=
T Consensus 37 ~l~~ll~~~-~p~~i~v~fD~~~~~~~f-R~~l~p-~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~~~~--------- 104 (256)
T PRK09482 37 ALDKLIRHS-QPTHAVAVFDGDARSSGW-RHQLLP-DYKAGRKPMPEALQQGLPAIRAAFEELGIDSWHAD--------- 104 (256)
T ss_pred HHHHHHHHc-CCCEEEEEEeCCCCCccc-HHHHhH-HHhcCCCCCcHHHHHHHHHHHHHHHhCCCCEeccC---------
Confidence 445555543 38999999997554 4 221111 111111 123334445566777899876542
Q ss_pred CHHHHHHHHHHHHHHH
Q 038167 95 TQNEIRYLMDLMLEKM 110 (292)
Q Consensus 95 ~~~Ev~~Lm~l~~~~l 110 (292)
--|=+.++--+...+
T Consensus 105 -g~EADDvIatla~~~ 119 (256)
T PRK09482 105 -GNEADDLIATLAVKV 119 (256)
T ss_pred -CcCHHHHHHHHHHHH
Confidence 235566655554443
No 45
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=45.14 E-value=2.7e+02 Score=26.22 Aligned_cols=106 Identities=11% Similarity=0.049 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHH
Q 038167 62 AGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIR 141 (292)
Q Consensus 62 ~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~ 141 (292)
.-++.+.++++|+.+.||.-|.+-.-+.|...=+.+|-..+++...+... ..+.| ++|-.+.=.++..
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-----------grvpv-i~Gv~~~~t~~ai 93 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA-----------GRVPV-FVGATTLNTRDTI 93 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC-----------CCCCE-EEEeccCCHHHHH
Confidence 34688999999999999999999998999999999999988887665431 12332 3443332235555
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 142 VTAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 142 ~~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
+.++.+++... ...+-+.-.| -+.++|++-.+++++.+
T Consensus 94 ~~a~~A~~~Ga---d~vlv~~P~y~~~~~~~l~~yf~~va~a~ 133 (309)
T cd00952 94 ARTRALLDLGA---DGTMLGRPMWLPLDVDTAVQFYRDVAEAV 133 (309)
T ss_pred HHHHHHHHhCC---CEEEECCCcCCCCCHHHHHHHHHHHHHhC
Confidence 55555555433 3333332222 35689999999998764
No 46
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=44.71 E-value=2.3e+02 Score=26.37 Aligned_cols=104 Identities=14% Similarity=0.062 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-.+.+.++++|+.+.||.-+.+..-+.|-+.-+.+|-..+++...+... .++.| ++|-.... .+..+
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~-----------~~~pv-i~gv~~~t-~~~i~ 85 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA-----------GRVPV-LAGAGYGT-ATAIA 85 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-----------CCCCE-EEecCCCH-HHHHH
Confidence 3577899999999999999999998888899999999988877665531 12222 22321122 34444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... ...+-+--.| -+.++|.+-.+.+++.+
T Consensus 86 ~a~~a~~~Ga---d~v~~~pP~y~~~~~~~i~~~f~~v~~~~ 124 (289)
T cd00951 86 YAQAAEKAGA---DGILLLPPYLTEAPQEGLYAHVEAVCKST 124 (289)
T ss_pred HHHHHHHhCC---CEEEECCCCCCCCCHHHHHHHHHHHHhcC
Confidence 4444444432 2333333334 36788988888887763
No 47
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=44.29 E-value=1.8e+02 Score=27.30 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=46.2
Q ss_pred HHHHhCCCCeEEEEeecc------CCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecC-CCCCC--HHHHH
Q 038167 72 KYCAELSVKYVSIYAFSI------DNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGN-LGLVS--EPIRV 142 (292)
Q Consensus 72 ~wc~~~GI~~vSvYafS~------eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd-~~~lp--~~~~~ 142 (292)
+.+.+.|++.|.+|. |+ .|++++.+|+-..+.-+.++.. ..|.++++.-. ...-+ +.+.+
T Consensus 81 e~A~~~g~~~v~i~~-s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~----------~~g~~v~~~~ed~~r~d~~~~v~~ 149 (279)
T cd07947 81 KLVKEMGLKETGILM-SVSDYHIFKKLKMTREEAMEKYLEIVEEAL----------DHGIKPRCHLEDITRADIYGFVLP 149 (279)
T ss_pred HHHHHcCcCEEEEEE-cCCHHHHHHHhCcCHHHHHHHHHHHHHHHH----------HCCCeEEEEEEcccCCCcccchHH
Confidence 456678999999983 43 5789999887666555544432 24556555542 22222 22223
Q ss_pred HHHHHHHHcC-CCCeEEEEEEecCC
Q 038167 143 TAEKVMRATS-KNTRIVILICLAYS 166 (292)
Q Consensus 143 ~i~~~e~~T~-~~~~~~lni~~~Y~ 166 (292)
.+.++-+.-. .+....+++|-..|
T Consensus 150 ~~~~~~~~~~~~G~~~~i~l~DTvG 174 (279)
T cd07947 150 FVNKLMKLSKESGIPVKIRLCDTLG 174 (279)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCC
Confidence 3333333211 12234678887666
No 48
>smart00281 LamB Laminin B domain.
Probab=41.20 E-value=51 Score=27.10 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=34.1
Q ss_pred CCCCcEEEeecCCcccC-----CccccccCceeEEecCCCCCC-----CCHHHHHHHHHHH
Q 038167 228 YPNPDILIRTSGENRLS-----NFLLWQSSNCMLYSPAALWPE-----IGLRHLIWAILNF 278 (292)
Q Consensus 228 ~p~pDLlIRTsge~RLS-----~FLlWQs~ysEl~F~~~~WPd-----f~~~df~~al~~y 278 (292)
...||++|. |+..+|+ +..|.+...=++.|....|+. .+..||..+|.+-
T Consensus 40 ~~~pdViL~-G~~~~l~~~~~~~~~p~~~~~~~v~~~e~~~~~~~g~p~tr~~fm~vLanl 99 (127)
T smart00281 40 VSAPDVILE-GNGLRISHPAEGPPLPDELTTVEVRFREENWQYFGGRPVTREDLMMVLANL 99 (127)
T ss_pred CCCCCEEEE-CCCeEEEEeecCCCCCCcceEEEEEEEecccCcCCCCCcCHHHHHHHHhCc
Confidence 457999996 5555665 344544432378888888877 5688998888653
No 49
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=40.97 E-value=2.6e+02 Score=27.36 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=60.6
Q ss_pred HhHHHHHHHHHHHHHhC-CCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHH
Q 038167 61 RAGFLTLMSLLKYCAEL-SVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEP 139 (292)
Q Consensus 61 ~~G~~~l~~ii~wc~~~-GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~ 139 (292)
....+.+.++++...+. |++.+++.-+-.|.+-++..-...+.+++.++ ....++.+.+..+-..|.++
T Consensus 47 ~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~----------~~~~~i~~~i~TNG~ll~~e 116 (412)
T PRK13745 47 VMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKY----------ARGRQIDNCIQTNGTLLTDE 116 (412)
T ss_pred CCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHH----------cCCCceEEEEeecCEeCCHH
Confidence 35678888888887765 77888776455788888754333333333222 12356777788888889887
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHH
Q 038167 140 IRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVE 176 (292)
Q Consensus 140 ~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~ 176 (292)
..+.+.+ + + +.|.+|-+|-.++.+..|
T Consensus 117 ~~~~l~~-------~-~--~~v~ISlDG~~~~hD~~R 143 (412)
T PRK13745 117 WCEFFRE-------N-N--FLVGVSIDGPQEFHDEYR 143 (412)
T ss_pred HHHHHHH-------c-C--eEEEEEecCCHHHhhhhc
Confidence 7665532 1 2 366777677666555443
No 50
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=39.65 E-value=73 Score=31.69 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCC-----------C-CHHHHHHHHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFK-----------R-TQNEIRYLMDLMLEKME 111 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~-----------R-~~~Ev~~Lm~l~~~~l~ 111 (292)
..+.+.+.++++.++|+.++|+|.++...+. . +.+|...++..+.+.+.
T Consensus 216 t~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~ 276 (455)
T TIGR00538 216 TKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLT 276 (455)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999643331 1 24555566666655553
No 51
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=39.28 E-value=70 Score=25.05 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=26.5
Q ss_pred chhHHhHHHHHHHHHHHH-HhCCCCeEEEEeeccCC
Q 038167 57 GAGHRAGFLTLMSLLKYC-AELSVKYVSIYAFSIDN 91 (292)
Q Consensus 57 ~~Gh~~G~~~l~~ii~wc-~~~GI~~vSvYafS~eN 91 (292)
..|+-.|.+.+..++.|| .++|+..|.++..+ +|
T Consensus 95 ~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~-~N 129 (142)
T PF13302_consen 95 YRGKGYGTEALKLLLDWAFEELGLHRIIATVMA-DN 129 (142)
T ss_dssp GTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEET-T-
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECc-CC
Confidence 345555889999999999 58999999998765 45
No 52
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=39.12 E-value=1.9e+02 Score=26.99 Aligned_cols=97 Identities=11% Similarity=0.069 Sum_probs=57.8
Q ss_pred HHHHHhCCCCeEEEEe-----eccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecC-CC---CC-CHHH
Q 038167 71 LKYCAELSVKYVSIYA-----FSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGN-LG---LV-SEPI 140 (292)
Q Consensus 71 i~wc~~~GI~~vSvYa-----fS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd-~~---~l-p~~~ 140 (292)
++++.+.|++.|.++. +...|++++.+|+-..+.-+.++.. ..|..+++.-. .. +. |+.+
T Consensus 80 ~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~----------~~G~~v~~~~~d~~~~~r~~~~~~ 149 (280)
T cd07945 80 VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAI----------KNGIEVNIYLEDWSNGMRDSPDYV 149 (280)
T ss_pred HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHH----------hCCCEEEEEEEeCCCCCcCCHHHH
Confidence 5667888999999997 5667888998877555444443332 23445444332 11 33 4556
Q ss_pred HHHHHHHHHHcCCCCeEEEEEEec--CCCHHHHHHHHHHHHHH
Q 038167 141 RVTAEKVMRATSKNTRIVILICLA--YSSTEEIVHTVEETCLV 181 (292)
Q Consensus 141 ~~~i~~~e~~T~~~~~~~lni~~~--Y~Gr~EIv~a~~~l~~~ 181 (292)
.+.++.+.+...+ .|++|-. +.-=.++.+.++.+.+.
T Consensus 150 ~~~~~~~~~~G~~----~i~l~DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 150 FQLVDFLSDLPIK----RIMLPDTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred HHHHHHHHHcCCC----EEEecCCCCCCCHHHHHHHHHHHHhh
Confidence 6666666554322 4666654 44455676666666544
No 53
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=38.89 E-value=4e+02 Score=26.44 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=40.6
Q ss_pred EEecCC---CCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHh
Q 038167 128 CFIGNL---GLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVT 182 (292)
Q Consensus 128 ~~iGd~---~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~ 182 (292)
-++|.. ...++.++..+..+......+. .+-++.|||+-.+-++.+++..++.
T Consensus 301 ~vvGsPT~~~~~~p~i~~~l~~v~~~~~~~k--~~~vfgS~GW~g~av~~i~~~l~~~ 356 (388)
T COG0426 301 LVVGSPTINGGAHPPIQTALGYVLALAPKNK--LAGVFGSYGWSGEAVDLIEEKLKDL 356 (388)
T ss_pred EEEecCcccCCCCchHHHHHHHHHhccCcCc--eEEEEeccCCCCcchHHHHHHHHhc
Confidence 367875 4577788888877766655443 3788999999999999999998873
No 54
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=38.27 E-value=1.8e+02 Score=26.03 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=54.0
Q ss_pred EEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCC-CCCHHHHHHHHHHHHHHHHHHh
Q 038167 36 HIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF-KRTQNEIRYLMDLMLEKMEFLL 114 (292)
Q Consensus 36 HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~-~R~~~Ev~~Lm~l~~~~l~~l~ 114 (292)
-++|++.|.+-|. +++ .++.+...+.|+..|.+=.+.- -| +|+|+|+.+.+..+.+.....
T Consensus 3 t~~v~~SGDgGw~---~~d-------------~~~a~~l~~~G~~VvGvdsl~Y-fw~~rtP~~~a~Dl~~~i~~y~~~- 64 (192)
T PF06057_consen 3 TLAVFFSGDGGWR---DLD-------------KQIAEALAKQGVPVVGVDSLRY-FWSERTPEQTAADLARIIRHYRAR- 64 (192)
T ss_pred EEEEEEeCCCCch---hhh-------------HHHHHHHHHCCCeEEEechHHH-HhhhCCHHHHHHHHHHHHHHHHHH-
Confidence 3688999987775 333 2356677789999999822110 12 699999988776665554332
Q ss_pred hhccccccCCcEEEEecCC----------CCCCHHHHHHHH
Q 038167 115 REDGFLSKYGVRVCFIGNL----------GLVSEPIRVTAE 145 (292)
Q Consensus 115 ~~~~~~~~~~irv~~iGd~----------~~lp~~~~~~i~ 145 (292)
...-++-.+|-. ..||+++++.+.
T Consensus 65 -------w~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~ 98 (192)
T PF06057_consen 65 -------WGRKRVVLIGYSFGADVLPFIYNRLPAALRARVA 98 (192)
T ss_pred -------hCCceEEEEeecCCchhHHHHHhhCCHHHHhhee
Confidence 123367778843 457777776554
No 55
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=38.19 E-value=3.4e+02 Score=25.30 Aligned_cols=105 Identities=10% Similarity=0.017 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhCC-CCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHH
Q 038167 63 GFLTLMSLLKYCAELS-VKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIR 141 (292)
Q Consensus 63 G~~~l~~ii~wc~~~G-I~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~ 141 (292)
-.+.+.++++|+.+.| |.-|.+..-+.|.+.=+.+|-..+++...+... ..+.| ++|-...=.++..
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-----------~~~pv-i~gv~~~~t~~~i 86 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-----------DQIAL-IAQVGSVNLKEAV 86 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCCCHHHHH
Confidence 4578889999999999 999999999999999999999999887765531 11222 2332222234445
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 142 VTAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 142 ~~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
+.++.+++... ...+-+--.| .+.++|++-.+.+++.+
T Consensus 87 ~la~~a~~~Ga---d~v~v~~P~y~~~~~~~i~~yf~~v~~~~ 126 (290)
T TIGR00683 87 ELGKYATELGY---DCLSAVTPFYYKFSFPEIKHYYDTIIAET 126 (290)
T ss_pred HHHHHHHHhCC---CEEEEeCCcCCCCCHHHHHHHHHHHHhhC
Confidence 55555555433 2222232222 23688999888887653
No 56
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=37.74 E-value=3.9e+02 Score=25.89 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=59.9
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCC---CCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCC
Q 038167 57 GAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFK---RTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNL 133 (292)
Q Consensus 57 ~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~---R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~ 133 (292)
.+-+..-+..+..++.||...||. +|-+|..-|- -+-.+-......+...|++.. .+.+++++|+-+.-+.
T Consensus 65 ~~l~~~Nl~~l~r~l~~~~~~~I~---lyRlSSsLfPla~h~~~~g~~~l~~~~~eL~evG---e~a~~~~~Rl~~HPdQ 138 (347)
T COG4294 65 LQLYKQNLLNLIRLLEYNHAHGIR---LYRLSSSLFPLADHADTKGWYTLEFIQSELEEVG---ELANKHNHRLTMHPDQ 138 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCce---EEEecccccccccCccchhHHHHHHHHHHHHHHH---HHHHhhCceeeecCCc
Confidence 344566778889999999999985 7777775542 221233334444444444432 2456788887665553
Q ss_pred -----CCCCHHHHHHHHHHHH------HcCCCCeEEEEEEe--cCCCHHHH
Q 038167 134 -----GLVSEPIRVTAEKVMR------ATSKNTRIVILICL--AYSSTEEI 171 (292)
Q Consensus 134 -----~~lp~~~~~~i~~~e~------~T~~~~~~~lni~~--~Y~Gr~EI 171 (292)
+.-|+=+..++..+.- .-.-+.+..+|+-+ -||||++=
T Consensus 139 f~vl~S~~~eV~~ssir~layH~r~l~~mgl~~Rs~~~lhlgg~~gGK~~~ 189 (347)
T COG4294 139 FTVLNSPREEVVDSSIRDLAYHYRILDGMGLAERSVWNLHLGGTHGGKKER 189 (347)
T ss_pred eEEecCCchHHHHHHHHHHHHHHHHHhhcCCCcCCceEEEeccccCCchhH
Confidence 2223333334433221 11112244555555 89999753
No 57
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=37.69 E-value=51 Score=30.00 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=29.2
Q ss_pred CCEEEEEecCCchHHHhcCCCccchhHHhH-----HHHHHHHHHHHHhCCCCeEEEE
Q 038167 34 PNHIAFILDGNRRFAKKHNLAGEGAGHRAG-----FLTLMSLLKYCAELSVKYVSIY 85 (292)
Q Consensus 34 P~HIaiImDGNRR~A~~~gl~~~~~Gh~~G-----~~~l~~ii~wc~~~GI~~vSvY 85 (292)
|.|++++.||.+..=|..=.+ ...+++.. ...+..+-+++..+||+++..-
T Consensus 50 p~~~~~~fD~~~~~~R~~l~p-~YK~~R~~~p~~l~~q~~~~~~~l~~~gi~~i~~~ 105 (240)
T cd00008 50 PTYVAVVFDAGGKTFRHELYP-EYKANRKKMPEELREQIPLIKELLEALGIPVLEIE 105 (240)
T ss_pred CCeEEEEEeCCCCcccccccH-HHHcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecC
Confidence 899999999974432333223 33333322 1233444455666899887663
No 58
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=37.38 E-value=3.5e+02 Score=25.25 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-.+.+.++++|+.+.||.-+.+-..+.|-+.=+.+|...+++...+... .++.| +.|-...=.++..+
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-----------g~~pv-i~gv~~~~t~~ai~ 86 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-----------GRIPF-APGTGALNHDETLE 86 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-----------CCCcE-EEECCcchHHHHHH
Confidence 3577889999999999999999999999999999999999887665421 12333 23332211233344
Q ss_pred HHHHHHHHcCCCCeEEEEEEec-C--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLA-Y--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~-Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... ...+ +.-+ | -+.++|++-.+.+++.+
T Consensus 87 ~a~~A~~~Ga---d~v~-v~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 87 LTKFAEEAGA---DAAM-VIVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred HHHHHHHcCC---CEEE-EcCccCCCCCHHHHHHHHHHHHHhc
Confidence 4444444322 2222 2223 2 24689999999998764
No 59
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=37.17 E-value=81 Score=31.41 Aligned_cols=49 Identities=8% Similarity=0.086 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCC-C----------C-CHHHHHHHHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNF-K----------R-TQNEIRYLMDLMLEKME 111 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~-~----------R-~~~Ev~~Lm~l~~~~l~ 111 (292)
..+.+.+.++++.++|++.+|+|.++...+ + - +.+|...++..+.+.|.
T Consensus 217 t~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 277 (453)
T PRK13347 217 TVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLL 277 (453)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999864333 1 1 23455566666666554
No 60
>PRK02551 flavoprotein NrdI; Provisional
Probab=36.92 E-value=1.1e+02 Score=26.34 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=41.5
Q ss_pred EEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHH
Q 038167 36 HIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKME 111 (292)
Q Consensus 36 HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~ 111 (292)
-.|||--|||-|....++. + -..+.+.+|+.|--|.+|. .+++|..+.+.+.+.+.
T Consensus 96 ~~gVigsGNrNfg~~F~~a---------a------~~ia~~~~vP~L~~fEl~G-----T~~Dv~~v~~~~~~~~~ 151 (154)
T PRK02551 96 CLGIIGSGNRNFNNQYCLT---------A------KQYAKRFGFPMLADFELRG-----TPSDIERIAAIIAELYA 151 (154)
T ss_pred eEEEEeecccHHHHHHHHH---------H------HHHHHHcCCCEEEEeeccC-----CHHHHHHHHHHHHHHHH
Confidence 4799999999887664432 1 2347789999999999887 56788887777666553
No 61
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=34.90 E-value=3.9e+02 Score=25.03 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-.+.+.++++|..+.||.-+.+..-+.|-+.-+.+|-..+++...+... ..+.| ++|-.... .+..+
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-----------~~~pv-i~gv~~~t-~~~i~ 92 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA-----------GRVPV-IAGAGGGT-AQAIE 92 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCCH-HHHHH
Confidence 4577899999999999999999999999999999999998877665431 11222 22322222 33444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... +..+-+.-.| .+.++|.+--+.+++.+
T Consensus 93 ~~~~a~~~Ga---dav~~~pP~y~~~~~~~i~~~f~~va~~~ 131 (303)
T PRK03620 93 YAQAAERAGA---DGILLLPPYLTEAPQEGLAAHVEAVCKST 131 (303)
T ss_pred HHHHHHHhCC---CEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 4444444322 2333222223 36788999888888764
No 62
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=34.04 E-value=3.5e+02 Score=24.29 Aligned_cols=65 Identities=5% Similarity=0.148 Sum_probs=41.1
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG 131 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG 131 (292)
.....+.+.+++++|.++|++.|.+..+. .+..+.. ...++.+.+.+++++. ...++||++-+-.
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~--~~~~~~~--~~~~~~~~~~l~~l~~---~a~~~gv~l~lE~ 153 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGYD--VYYEEKS--EETRQRFIEGLAWAVE---QAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCcc--ccccccc--HHHHHHHHHHHHHHHH---HHHHhCCEEEEEe
Confidence 45567889999999999999999986432 1111111 1233455556666553 2456788877644
No 63
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=33.50 E-value=1.6e+02 Score=24.57 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHH
Q 038167 64 FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLM 103 (292)
Q Consensus 64 ~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm 103 (292)
.....+.+..|.+.|++.|+|=++|+.++.=|+++...+|
T Consensus 93 ~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~ 132 (140)
T cd02905 93 YSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIA 132 (140)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHH
Confidence 4556777888999999999999999999999999887765
No 64
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=31.24 E-value=4.2e+02 Score=24.42 Aligned_cols=101 Identities=11% Similarity=-0.033 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHH
Q 038167 62 AGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIR 141 (292)
Q Consensus 62 ~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~ 141 (292)
.-.+.+.++++|..+.||.-|.+-.-+.|-+.=+.+|...+.+...+.. .++ +-.+|.. =.++..
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~------------~~v-i~gvg~~--~~~~ai 81 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT------------DKV-IFQVGSL--NLEESI 81 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc------------CCE-EEEeCcC--CHHHHH
Confidence 3457888999999999999999999999999999999999988765432 122 3334432 234445
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecC---CCHHHHHHHHHHHHH
Q 038167 142 VTAEKVMRATSKNTRIVILICLAY---SSTEEIVHTVEETCL 180 (292)
Q Consensus 142 ~~i~~~e~~T~~~~~~~lni~~~Y---~Gr~EIv~a~~~l~~ 180 (292)
+.++.+++... ...+-+.-.| .+.++|++=.+.+++
T Consensus 82 ~~a~~a~~~Ga---d~v~v~~P~y~~~~~~~~i~~yf~~v~~ 120 (279)
T cd00953 82 ELARAAKSFGI---YAIASLPPYYFPGIPEEWLIKYFTDISS 120 (279)
T ss_pred HHHHHHHHcCC---CEEEEeCCcCCCCCCHHHHHHHHHHHHh
Confidence 55555444433 3333322223 257888888888877
No 65
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.16 E-value=4.5e+02 Score=24.70 Aligned_cols=106 Identities=11% Similarity=0.045 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHH
Q 038167 62 AGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIR 141 (292)
Q Consensus 62 ~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~ 141 (292)
.-++.+.++++|..+.||.-|-+...+.|...=+.+|-..+++...+.... .+.| +.|--+.=..+..
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g-----------rvpv-iaG~g~~~t~eai 89 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG-----------RVPV-IAGVGSNSTAEAI 89 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC-----------CCcE-EEecCCCcHHHHH
Confidence 346889999999999999999999999999999999999998877665421 1222 4444333334444
Q ss_pred HHHHHHHHHcCCCCeEEEEEEec--CCCHHHHHHHHHHHHHHh
Q 038167 142 VTAEKVMRATSKNTRIVILICLA--YSSTEEIVHTVEETCLVT 182 (292)
Q Consensus 142 ~~i~~~e~~T~~~~~~~lni~~~--Y~Gr~EIv~a~~~l~~~~ 182 (292)
+..+.+++.. .+-.+-+--. -.+.+++.+--+.+++.+
T Consensus 90 ~lak~a~~~G---ad~il~v~PyY~k~~~~gl~~hf~~ia~a~ 129 (299)
T COG0329 90 ELAKHAEKLG---ADGILVVPPYYNKPSQEGLYAHFKAIAEAV 129 (299)
T ss_pred HHHHHHHhcC---CCEEEEeCCCCcCCChHHHHHHHHHHHHhc
Confidence 4444444433 2333333222 345678888888887775
No 66
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=30.02 E-value=76 Score=20.68 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=25.0
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHHHHH
Q 038167 153 KNTRIVILICLAYSSTEEIVHTVEETCL 180 (292)
Q Consensus 153 ~~~~~~lni~~~Y~Gr~EIv~a~~~l~~ 180 (292)
+++.+.|++.++-++++-+.+-+++|+.
T Consensus 8 G~Tty~V~~~F~~~s~et~~DKi~rli~ 35 (37)
T PF14202_consen 8 GKTTYVVEVHFSETSKETMQDKIKRLIR 35 (37)
T ss_pred CCEEEEEEEEECCCccccHHHHHHHHHh
Confidence 5678999999999999999999988865
No 67
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=29.74 E-value=2.1e+02 Score=24.26 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHH-HHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLM-DLMLEKM 110 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm-~l~~~~l 110 (292)
=...+.+++..|.+.|++.|.+=++++.++.=|+++....| +.+.+++
T Consensus 90 L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl 138 (165)
T cd02908 90 LASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFL 138 (165)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHH
Confidence 34566677777888999999999999999999999887666 4444444
No 68
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=29.47 E-value=1.5e+02 Score=28.46 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCC
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDN 91 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN 91 (292)
..+.+.+.++++.++|+.++++|.++.+.
T Consensus 173 t~~~~~~tl~~~~~l~~~~i~~y~l~~~~ 201 (375)
T PRK05628 173 SDDDWRASLDAALEAGVDHVSAYALIVED 201 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeeeecCC
Confidence 56888999999999999999999998643
No 69
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=29.37 E-value=1.5e+02 Score=24.29 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 65 LTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 65 ~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
+.+.+++.-|.+.|++.|.+=+++|.++.=|++++...|-
T Consensus 92 ~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~ 131 (137)
T cd02903 92 DIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMF 131 (137)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHH
Confidence 4456777888899999999999999999999998887763
No 70
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=29.31 E-value=4.3e+02 Score=23.86 Aligned_cols=51 Identities=8% Similarity=0.167 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCCC---eEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 038167 63 GFLTLMSLLKYCAELSVK---YVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLL 114 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~---~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~ 114 (292)
-+..+-.++.||.+.||+ ++.+|......|-.+.. .+.+...+.++++..+
T Consensus 14 n~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~-~~~~~~~~~~~i~~v~ 67 (254)
T smart00633 14 NFSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNLS-KETLLARLENHIKTVV 67 (254)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcCC-HHHHHHHHHHHHHHHH
Confidence 456677799999999999 45677665566654211 2233344444544444
No 71
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=29.27 E-value=1.1e+02 Score=28.20 Aligned_cols=45 Identities=9% Similarity=0.177 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeecc----CCCCCCHHHHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSI----DNFKRTQNEIRYLMDLML 107 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~----eN~~R~~~Ev~~Lm~l~~ 107 (292)
..+.+.+|++.|+++||+.+-=..||. +--+..+++|..|+..++
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 578899999999999999876544442 223456788998887653
No 72
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=28.94 E-value=78 Score=30.47 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHH
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKME 111 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~ 111 (292)
+..|++|..++++.|.++|++.||+-+=+.-..... .|-......+.+.+.
T Consensus 133 ~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~-aE~~G~~~aia~~l~ 183 (316)
T TIGR00513 133 APEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIG-AEERGQSEAIARNLR 183 (316)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHH-HHHHHHHHHHHHHHH
Confidence 457899999999999999999999987544322222 333344444444443
No 73
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=28.85 E-value=3.8e+02 Score=25.01 Aligned_cols=106 Identities=25% Similarity=0.366 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHH---HHHHHHHHhhhccccccCCcEEE---Eec-CCC
Q 038167 62 AGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDL---MLEKMEFLLREDGFLSKYGVRVC---FIG-NLG 134 (292)
Q Consensus 62 ~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l---~~~~l~~l~~~~~~~~~~~irv~---~iG-d~~ 134 (292)
.|+.+ .+.++|..+.+|+.+|+= |-.+| +-+..++.+ .+++++.+. ++.++|+||. .+| +..
T Consensus 95 vGfvd-E~~~eklk~~~vdvvsLD-fvgDn-----~vIk~vy~l~ksv~dyl~~l~----~L~e~~irvvpHitiGL~~g 163 (275)
T COG1856 95 VGFVD-ESDLEKLKEELVDVVSLD-FVGDN-----DVIKRVYKLPKSVEDYLRSLL----LLKENGIRVVPHITIGLDFG 163 (275)
T ss_pred eeecc-HHHHHHHHHhcCcEEEEe-ecCCh-----HHHHHHHcCCccHHHHHHHHH----HHHHcCceeceeEEEEeccC
Confidence 35555 677899999999999984 55576 556666666 556665543 3566777753 344 333
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCH----------HHHHHHHHHHHHH
Q 038167 135 LVSEPIRVTAEKVMRATSKNTRIVILICLAYSST----------EEIVHTVEETCLV 181 (292)
Q Consensus 135 ~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr----------~EIv~a~~~l~~~ 181 (292)
.+.-+. ++|+-+..... .-+.|++++++-|. +|++++++..-+.
T Consensus 164 ki~~e~-kaIdiL~~~~~--DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~ 217 (275)
T COG1856 164 KIHGEF-KAIDILVNYEP--DALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKK 217 (275)
T ss_pred cccchH-HHHHHHhcCCC--CeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHh
Confidence 344332 34544443323 36899999998885 3777776655444
No 74
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=28.73 E-value=22 Score=27.57 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHH
Q 038167 38 AFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKY 73 (292)
Q Consensus 38 aiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~w 73 (292)
.+++|..+||+ +| ...||.-|.+.|.+.+.-
T Consensus 41 Vvvvde~g~~v----Ip-lL~GH~GGan~lA~~iA~ 71 (84)
T PF11760_consen 41 VVVVDEDGRFV----IP-LLGGHRGGANELARQIAE 71 (84)
T ss_dssp EEEE-TT--EE----EE-EE-TTTT-HHHHHHHHHH
T ss_pred EEEEeCCCCEE----EE-eccCCcchHHHHHHHHHH
Confidence 56788888877 77 999999999999877654
No 75
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=28.57 E-value=1.4e+02 Score=28.90 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=27.3
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccC
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSID 90 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~e 90 (292)
+..|+++..++++.|.++|++.||+.+=+.-
T Consensus 136 ~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA 166 (322)
T CHL00198 136 SPGGYRKALRLMKHANKFGLPILTFIDTPGA 166 (322)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 5678999999999999999999999875554
No 76
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=28.53 E-value=1.5e+02 Score=28.50 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccC
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSID 90 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~e 90 (292)
..+.+.+.++++.++|+.++|+|.++.+
T Consensus 164 t~e~~~~~l~~~~~l~~~~is~y~l~~~ 191 (374)
T PRK05799 164 TLEDWKETLEKVVELNPEHISCYSLIIE 191 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeccEec
Confidence 5688999999999999999999998864
No 77
>TIGR03586 PseI pseudaminic acid synthase.
Probab=28.40 E-value=2.9e+02 Score=26.65 Aligned_cols=178 Identities=12% Similarity=0.042 Sum_probs=100.9
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCCeEEE-EeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCC
Q 038167 57 GAGHRAGFLTLMSLLKYCAELSVKYVSI-YAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGL 135 (292)
Q Consensus 57 ~~Gh~~G~~~l~~ii~wc~~~GI~~vSv-YafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~ 135 (292)
..+...+.+...++..+|.+.||..+|- |+. +.|+.+ .+.|+.+-=||..+.
T Consensus 69 ~~~~el~~e~~~~L~~~~~~~Gi~~~stpfd~---------~svd~l------------------~~~~v~~~KI~S~~~ 121 (327)
T TIGR03586 69 YQEAHTPWEWHKELFERAKELGLTIFSSPFDE---------TAVDFL------------------ESLDVPAYKIASFEI 121 (327)
T ss_pred HHHhhCCHHHHHHHHHHHHHhCCcEEEccCCH---------HHHHHH------------------HHcCCCEEEECCccc
Confidence 3445667888899999999999999764 542 223222 124555556677777
Q ss_pred CCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCccchhhhcccCcCCCC
Q 038167 136 VSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIK 215 (292)
Q Consensus 136 lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~It 215 (292)
-.-++++.+.+ ++..|.+--+.+.-+||..|+..+.+.-... . .-|-|. ... +-.+++++
T Consensus 122 ~n~~LL~~va~--------~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~-i------~LlhC~-s~Y----P~~~~~~n 181 (327)
T TIGR03586 122 TDLPLIRYVAK--------TGKPIIMSTGIATLEEIQEAVEACREAGCKD-L------VLLKCT-SSY----PAPLEDAN 181 (327)
T ss_pred cCHHHHHHHHh--------cCCcEEEECCCCCHHHHHHHHHHHHHCCCCc-E------EEEecC-CCC----CCCcccCC
Confidence 76677776642 3446667777789999999999886531100 0 000010 000 11345566
Q ss_pred HHHHHh--hhhcCCCCCCcEEEeecCCcccCCccccccC------ceeEEec-CCCC--CC----CCHHHHHHHHHHHHH
Q 038167 216 LVDLEK--HMYMGVYPNPDILIRTSGENRLSNFLLWQSS------NCMLYSP-AALW--PE----IGLRHLIWAILNFQR 280 (292)
Q Consensus 216 ~~~i~~--~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~------ysEl~F~-~~~W--Pd----f~~~df~~al~~yq~ 280 (292)
...|.. ..+ ++-|=.|++ ..|..+=-.+ -=|-+|+ +..| || +++.+|...+..-..
T Consensus 182 L~~i~~lk~~f-------~~pVG~SDH--t~G~~~~~aAva~GA~iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~ 252 (327)
T TIGR03586 182 LRTIPDLAERF-------NVPVGLSDH--TLGILAPVAAVALGACVIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRN 252 (327)
T ss_pred HHHHHHHHHHh-------CCCEEeeCC--CCchHHHHHHHHcCCCEEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHH
Confidence 555552 121 122222332 2232111111 1277777 4457 33 567888888888888
Q ss_pred Hhhhhhhhhc
Q 038167 281 HHAYLEKKKK 290 (292)
Q Consensus 281 r~~r~gk~~~ 290 (292)
.+.-+|+-.|
T Consensus 253 ~~~~lg~~~k 262 (327)
T TIGR03586 253 AWLALGEVNY 262 (327)
T ss_pred HHHHhCCCCC
Confidence 7777777554
No 78
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=28.39 E-value=1.8e+02 Score=28.16 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCC
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDN 91 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN 91 (292)
..+.+.+-++.+.++++.+||+|.++.+-
T Consensus 168 t~~~~~~~l~~~~~l~~~~is~y~l~~~~ 196 (370)
T PRK06294 168 SLSDFIVDLHQAITLPITHISLYNLTIDP 196 (370)
T ss_pred CHHHHHHHHHHHHccCCCeEEEeeeEecC
Confidence 56889999999999999999999998754
No 79
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=28.11 E-value=1.3e+02 Score=29.85 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeec
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFS 88 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS 88 (292)
..+.+.+.++++.++|+.++|+|.++
T Consensus 216 t~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 216 TPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 56789999999999999999999986
No 80
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=28.01 E-value=90 Score=31.16 Aligned_cols=82 Identities=11% Similarity=0.085 Sum_probs=52.6
Q ss_pred CCCCCEEE---EEecCCchHHHhcCCCccc--------------hhHHhH-------------HHHHHHHHHHHHhCCCC
Q 038167 31 GVIPNHIA---FILDGNRRFAKKHNLAGEG--------------AGHRAG-------------FLTLMSLLKYCAELSVK 80 (292)
Q Consensus 31 ~~iP~HIa---iImDGNRR~A~~~gl~~~~--------------~Gh~~G-------------~~~l~~ii~wc~~~GI~ 80 (292)
..+|-|+- +=.|.=+.||+.+|+. .. .+|+.| ++...+.+++|.++|-+
T Consensus 87 ~~v~LH~~wd~vD~~elk~~A~e~GL~-lda~Npn~Fs~~~~q~~~yk~GSLtnPD~~VR~~AIeh~~~~i~Ig~elGs~ 165 (412)
T TIGR02629 87 PNVSLHIPWDKADPKELKARGSALGLG-FDAMNSNTFSDAPGQAHSYKFGSLSHTDAATRRQAVEHNLECIEIGKALGSK 165 (412)
T ss_pred CCccccCCCCcCCHHHHHHHHHHcCCc-cceeccccccCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35788984 4344556899999886 33 244334 67788999999999999
Q ss_pred eEEEEeeccCCCCCCHHHHHH--HHHHHHHHHHHHhhh
Q 038167 81 YVSIYAFSIDNFKRTQNEIRY--LMDLMLEKMEFLLRE 116 (292)
Q Consensus 81 ~vSvYafS~eN~~R~~~Ev~~--Lm~l~~~~l~~l~~~ 116 (292)
+||+|.= +=++ -+-+.+. ..+.+.+.++++...
T Consensus 166 ~v~IW~g--DG~~-yP~Q~~~~~~~~rl~esL~eI~~~ 200 (412)
T TIGR02629 166 ALTVWIG--DGSN-FPGQSNFTRAFERYLDAMKAVYAG 200 (412)
T ss_pred eeEEECC--CCCC-CcCccchHHHHHHHHHHHHHHHhh
Confidence 9999853 4444 2222222 444455555555543
No 81
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=27.77 E-value=3.2e+02 Score=21.91 Aligned_cols=72 Identities=17% Similarity=0.280 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCC
Q 038167 12 LCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDN 91 (292)
Q Consensus 12 ~~~~~~~~~~~~l~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN 91 (292)
|...+...++..+...-..+ ++-|+|+|.-|+.- . ...-+....+.|.++||.+-.+ .|+ +
T Consensus 8 va~~i~~~l~~~i~~l~~~~-~~P~Laii~vg~d~---------~------S~~Y~~~k~k~~~~~Gi~~~~~-~l~-~- 68 (117)
T PF00763_consen 8 VAKEIKEELKEEIEKLKEKG-ITPKLAIILVGDDP---------A------SISYVRSKQKAAEKLGIEFELI-ELP-E- 68 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHCT----EEEEEEES--H---------H------HHHHHHHHHHHHHHHT-EEEEE-EE--T-
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCcEEEEEecCCCh---------h------HHHHHHHHHHHHHHcCCceEEE-ECC-C-
Confidence 44555666666665544444 55599999999742 1 2233556788899999987655 342 1
Q ss_pred CCCCHHHHHHHH
Q 038167 92 FKRTQNEIRYLM 103 (292)
Q Consensus 92 ~~R~~~Ev~~Lm 103 (292)
.-+.+|+...+
T Consensus 69 -~~~~~el~~~i 79 (117)
T PF00763_consen 69 -DISEEELLELI 79 (117)
T ss_dssp -TSSHHHHHHHH
T ss_pred -CcCHHHHHHHH
Confidence 23455554443
No 82
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=27.40 E-value=56 Score=29.10 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=37.6
Q ss_pred CEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 038167 35 NHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLL 114 (292)
Q Consensus 35 ~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~ 114 (292)
-|||.|||++ .-.|..++.++++|+.. |++ --+.|-..+.+.+.+.+
T Consensus 87 ~hIaYiP~~~---------------~ViGLSKl~RiV~~~ar-----------------RlQ-iQERLT~qIa~~l~~~l 133 (188)
T PLN03044 87 IHVGYIPNAG---------------VILGLSKLARIAEVYAR-----------------RLQ-TQERLTRQIADAIVESV 133 (188)
T ss_pred EEEEEECCCC---------------ccccHHHHHHHHHHHhc-----------------CcH-HHHHHHHHHHHHHHHhh
Confidence 6999999832 14588999999998542 343 23345555666665543
Q ss_pred hhccccccCCcEEEEecC
Q 038167 115 REDGFLSKYGVRVCFIGN 132 (292)
Q Consensus 115 ~~~~~~~~~~irv~~iGd 132 (292)
...|+-|.+-+.
T Consensus 134 ------~p~gVaV~ieA~ 145 (188)
T PLN03044 134 ------EPLGVMVVVEAA 145 (188)
T ss_pred ------CCCceEEEEEEE
Confidence 356777666554
No 83
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=27.35 E-value=50 Score=29.16 Aligned_cols=25 Identities=20% Similarity=0.502 Sum_probs=20.4
Q ss_pred CEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHH
Q 038167 35 NHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCA 75 (292)
Q Consensus 35 ~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~ 75 (292)
-|||.||+|. -.|..++.++++|+.
T Consensus 82 ~hVaYiP~~~----------------ViGLSKl~RiV~~~a 106 (180)
T TIGR00063 82 AHVAYIPKDK----------------VIGLSKIARIVEFFA 106 (180)
T ss_pred EEEEEecCCc----------------eecHHHHHHHHHHHh
Confidence 6999999861 358899999999854
No 84
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=26.30 E-value=60 Score=28.88 Aligned_cols=58 Identities=22% Similarity=0.397 Sum_probs=37.2
Q ss_pred CEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 038167 35 NHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLL 114 (292)
Q Consensus 35 ~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~ 114 (292)
-|||.|||| .-.|..++.++++|+.. |++ =-+.|-..+.+.+.+.+
T Consensus 90 ~hIaYiP~~----------------~ViGLSKl~Riv~~~ar-----------------RlQ-iQERlT~qIa~al~~~l 135 (188)
T PRK09347 90 AHVAYIPKG----------------KVIGLSKIARIVDFFAR-----------------RPQ-VQERLTAQIADALQEIL 135 (188)
T ss_pred EEEEEeCCC----------------ccccHHHHHHHHHHHHc-----------------Cch-hHHHHHHHHHHHHHHhh
Confidence 699999976 24588999999999653 332 12245455555555443
Q ss_pred hhccccccCCcEEEEecC
Q 038167 115 REDGFLSKYGVRVCFIGN 132 (292)
Q Consensus 115 ~~~~~~~~~~irv~~iGd 132 (292)
...|+-|.+-+.
T Consensus 136 ------~p~gV~V~ieA~ 147 (188)
T PRK09347 136 ------GPRGVAVVIEAE 147 (188)
T ss_pred ------CCCceEEEEEEE
Confidence 356777766664
No 85
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=26.03 E-value=50 Score=29.31 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=36.9
Q ss_pred CEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 038167 35 NHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLL 114 (292)
Q Consensus 35 ~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~ 114 (292)
-|||.|+|| .-.|..++.++++|+.. |++ =-+.|-..+.+.+.+.+
T Consensus 87 ~~VaYiP~~----------------~ViGLSKl~RiV~~~ar-----------------RlQ-iQERLt~qIa~al~~~l 132 (185)
T cd00642 87 VHIAYIPKD----------------KVIGLSKLARIVEFFSR-----------------RLQ-VQERLTKQIAVAIQEIL 132 (185)
T ss_pred EEEEEecCC----------------eeeeHHHHHHHHHHHhc-----------------Cch-HHHHHHHHHHHHHHHhh
Confidence 599999986 13588999999999543 333 12245555555555443
Q ss_pred hhccccccCCcEEEEecC
Q 038167 115 REDGFLSKYGVRVCFIGN 132 (292)
Q Consensus 115 ~~~~~~~~~~irv~~iGd 132 (292)
...|+-|.+-+.
T Consensus 133 ------~~~gVaV~i~A~ 144 (185)
T cd00642 133 ------GPQGVAVVIEAT 144 (185)
T ss_pred ------CCCcEEEEEEEE
Confidence 356777766654
No 86
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=26.01 E-value=1.8e+02 Score=28.49 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCC------------CCC-HHHHHHHHHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNF------------KRT-QNEIRYLMDLMLEKMEF 112 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~------------~R~-~~Ev~~Lm~l~~~~l~~ 112 (292)
..+.+.+-++.+.++++.+||+|.++.+-. ..+ .++...++..+.+.|.+
T Consensus 180 t~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 242 (400)
T PRK07379 180 TLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ 242 (400)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999986542 112 34555566666666543
No 87
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.98 E-value=5.8e+02 Score=24.29 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeecc
Q 038167 11 KLCRKLGVFMRKCVFGILSV-GVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSI 89 (292)
Q Consensus 11 ~~~~~~~~~~~~~l~~~l~~-~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~ 89 (292)
.+.+.+.+.++..+...-.. +..| ++|+|+=|++- . ...-+....+.|.++||.+. +|.|+-
T Consensus 10 ~iA~~i~~~lk~~v~~l~~~~g~~P-~LaiI~vg~d~---------a------s~~Yv~~k~k~~~~~Gi~~~-~~~l~~ 72 (297)
T PRK14168 10 EIREEILEEIRGEVAELKEKYGKVP-GLVTILVGESP---------A------SLSYVTLKIKTAHRLGFHEI-QDNQSV 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC-eEEEEEeCCCH---------H------HHHHHHHHHHHHHHcCCEEE-EEECCC
Confidence 45555566666655543333 4446 99999999742 2 22335556888999999964 555542
Q ss_pred CCCCCCHHHHHHHHHH
Q 038167 90 DNFKRTQNEIRYLMDL 105 (292)
Q Consensus 90 eN~~R~~~Ev~~Lm~l 105 (292)
| -+++|+...++.
T Consensus 73 -~--~t~~el~~~I~~ 85 (297)
T PRK14168 73 -D--ITEEELLALIDK 85 (297)
T ss_pred -C--CCHHHHHHHHHH
Confidence 3 255655555443
No 88
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=25.96 E-value=2.1e+02 Score=27.95 Aligned_cols=50 Identities=8% Similarity=0.130 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCC----CC----CH-HHHHHHHHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNF----KR----TQ-NEIRYLMDLMLEKMEF 112 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~----~R----~~-~Ev~~Lm~l~~~~l~~ 112 (292)
+.+.+.+-++.+.++++.+||+|.++.+.. ++ |. ++...+++++.+.|.+
T Consensus 186 t~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 244 (394)
T PRK08898 186 TLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAA 244 (394)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHH
Confidence 456777778889999999999999987652 11 22 3445555666666543
No 89
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=25.81 E-value=66 Score=28.82 Aligned_cols=58 Identities=24% Similarity=0.412 Sum_probs=37.3
Q ss_pred CEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 038167 35 NHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLL 114 (292)
Q Consensus 35 ~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~ 114 (292)
-|||.|||| . -.|..++.+++++.. +|++ =-+.|-..+-+.+.+.
T Consensus 96 ahVAYiP~g------------k----V~GlSKiaRiV~~~a-----------------rR~Q-vQErlT~qIA~al~~~- 140 (195)
T COG0302 96 AHVAYIPDG------------K----VIGLSKIARIVDIFA-----------------RRLQ-VQERLTEQIADALQEI- 140 (195)
T ss_pred EEEEEcCCC------------c----eecHHHHHHHHHHHh-----------------hhhH-HHHHHHHHHHHHHHHh-
Confidence 699999987 2 248899999999832 2333 2334555555555544
Q ss_pred hhccccccCCcEEEEecC
Q 038167 115 REDGFLSKYGVRVCFIGN 132 (292)
Q Consensus 115 ~~~~~~~~~~irv~~iGd 132 (292)
+...|+-|.+-+.
T Consensus 141 -----L~p~GVaVvieA~ 153 (195)
T COG0302 141 -----LKPRGVAVVIEAE 153 (195)
T ss_pred -----cCcCceEEEEEEE
Confidence 3457787766554
No 90
>PRK05660 HemN family oxidoreductase; Provisional
Probab=25.73 E-value=1.8e+02 Score=28.20 Aligned_cols=51 Identities=10% Similarity=0.125 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEeeccCCC---CC-----C-HHHHHHHHHHHHHHHHH
Q 038167 62 AGFLTLMSLLKYCAELSVKYVSIYAFSIDNF---KR-----T-QNEIRYLMDLMLEKMEF 112 (292)
Q Consensus 62 ~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~---~R-----~-~~Ev~~Lm~l~~~~l~~ 112 (292)
...+.+.+.++.+.++|+.++|+|.+..+.. .+ + .++...++....+.+.+
T Consensus 171 qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (378)
T PRK05660 171 QSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTA 230 (378)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 3668889999999999999999999986542 21 2 24445566666555543
No 91
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=25.52 E-value=1.3e+02 Score=30.17 Aligned_cols=30 Identities=3% Similarity=0.177 Sum_probs=26.8
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeecc
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSI 89 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~ 89 (292)
+..|+++..++++.|.++|++.||+-+=+.
T Consensus 203 ~peGyRKAlR~mklAekf~lPIVtLVDTpG 232 (431)
T PLN03230 203 QPNGYRKALRFMRHAEKFGFPILTFVDTPG 232 (431)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 677999999999999999999999987544
No 92
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=25.02 E-value=1.5e+02 Score=28.54 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=26.4
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeecc
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSI 89 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~ 89 (292)
+..|+++..++++.|.++|++.||+-+=+.
T Consensus 133 ~peg~rKa~R~m~lA~~f~lPIVtlvDTpG 162 (319)
T PRK05724 133 RPEGYRKALRLMKMAEKFGLPIITFIDTPG 162 (319)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 457899999999999999999999987544
No 93
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=24.98 E-value=2.3e+02 Score=26.87 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=43.9
Q ss_pred HHHhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHH
Q 038167 23 CVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYL 102 (292)
Q Consensus 23 ~l~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~L 102 (292)
++.+.|+..+ +-||||||- . .-++-+.++++-|.+-|| .||.+=- ..-+...
T Consensus 138 ~vR~~I~~A~--kVIAIVMD~------------F-----TD~dIf~DLleAa~kR~V---pVYiLLD------~~~~~~F 189 (284)
T PF07894_consen 138 VVRRMIQQAQ--KVIAIVMDV------------F-----TDVDIFCDLLEAANKRGV---PVYILLD------EQNLPHF 189 (284)
T ss_pred HHHHHHHHhc--ceeEEEeec------------c-----ccHHHHHHHHHHHHhcCC---cEEEEec------hhcChHH
Confidence 3444444332 579999994 2 246778888888877776 5776421 1223333
Q ss_pred HHHHHHHHHHHhhhccccccCCcEEEEecCCC
Q 038167 103 MDLMLEKMEFLLREDGFLSKYGVRVCFIGNLG 134 (292)
Q Consensus 103 m~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~ 134 (292)
++++. .+-- +..+-.++|||.++=..
T Consensus 190 l~Mc~----~~~v--~~~~~~nmrVRsv~G~~ 215 (284)
T PF07894_consen 190 LEMCE----KLGV--NLQHLKNMRVRSVTGCT 215 (284)
T ss_pred HHHHH----HCCC--ChhhcCCeEEEEecCCe
Confidence 33322 2111 12335688999887543
No 94
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=24.97 E-value=2.3e+02 Score=22.99 Aligned_cols=47 Identities=21% Similarity=0.419 Sum_probs=26.5
Q ss_pred CCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHH-HHHhCCC-CeEEEEeeccCC
Q 038167 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLK-YCAELSV-KYVSIYAFSIDN 91 (292)
Q Consensus 33 iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~-wc~~~GI-~~vSvYafS~eN 91 (292)
+|+.|.|++|.-+ .+. |.. ...+.+.+. ....++- ..++++.|+.+-
T Consensus 1 ~~~~v~~vlD~S~------SM~----~~~--~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~ 49 (171)
T cd01461 1 LPKEVVFVIDTSG------SMS----GTK--IEQTKEALLTALKDLPPGDYFNIIGFSDTV 49 (171)
T ss_pred CCceEEEEEECCC------CCC----Chh--HHHHHHHHHHHHHhCCCCCEEEEEEeCCCc
Confidence 5999999999732 111 221 222332222 2334543 469999998753
No 95
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=24.59 E-value=6.2e+02 Score=24.14 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=26.2
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 038167 122 KYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKN 154 (292)
Q Consensus 122 ~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~ 154 (292)
..+-+|-+|-+-+.+...-.+++-+.-+..+++
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~ 136 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGD 136 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCC
Confidence 356788899889999999888888777766654
No 96
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=24.35 E-value=2.1e+02 Score=23.15 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHH
Q 038167 64 FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDL 105 (292)
Q Consensus 64 ~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l 105 (292)
...+.+++..|.+.+++.|.+=++++.+..=|++++..+|..
T Consensus 89 ~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~ 130 (133)
T cd03330 89 RKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVE 130 (133)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHH
Confidence 344556777777889999999999999999999999988754
No 97
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=24.10 E-value=2.2e+02 Score=27.32 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCC
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDN 91 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN 91 (292)
..+.+.+.++++.++|++++|+|.++.+.
T Consensus 165 t~~~~~~~l~~~~~l~~~~is~y~l~~~~ 193 (360)
T TIGR00539 165 TLNSLKEELKLAKELPINHLSAYALSVEP 193 (360)
T ss_pred CHHHHHHHHHHHHccCCCEEEeecceEcC
Confidence 56788899999999999999999987644
No 98
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=23.90 E-value=6.6e+02 Score=25.87 Aligned_cols=129 Identities=23% Similarity=0.250 Sum_probs=75.3
Q ss_pred CCCCCEEEEEecCCchHHHhcC--------CCccchhHHhHHHHHHHHHHHHHhCCCCeE-EEEeeccCCCCCCHHHHHH
Q 038167 31 GVIPNHIAFILDGNRRFAKKHN--------LAGEGAGHRAGFLTLMSLLKYCAELSVKYV-SIYAFSIDNFKRTQNEIRY 101 (292)
Q Consensus 31 ~~iP~HIaiImDGNRR~A~~~g--------l~~~~~Gh~~G~~~l~~ii~wc~~~GI~~v-SvYafS~eN~~R~~~Ev~~ 101 (292)
+.-|..|.+|..= |-=+-|| -+ ..+.-+.|+..|...+.-+..+||+.| .+=.|.++ +.+|+.+
T Consensus 317 gl~PdavVlVATv--RALK~hGG~~~~~l~~E-nv~avk~G~aNL~~Hi~Nikkfgvp~VVAIN~F~tD----t~~Ei~~ 389 (554)
T COG2759 317 GLKPDAVVLVATV--RALKMHGGVPKEDLTEE-NVDAVKKGFANLLKHIENIKKFGVPVVVAINKFPTD----TEAEIAA 389 (554)
T ss_pred CCCCCeEEEeeeh--HHHHHcCCCChHHhcch-hHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccCCCC----CHHHHHH
Confidence 4457777777652 2222222 11 235567899999999999999999985 44556655 7789988
Q ss_pred HHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHH
Q 038167 102 LMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLV 181 (292)
Q Consensus 102 Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~ 181 (292)
+-+++.+ .|+.+...---..=.+.-.+..+++...+..+ .-++-.=|+-.+.|-+-+..++++
T Consensus 390 i~~~~~~--------------~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~~---~~~f~~lYd~~~~i~~Ki~~I~~~ 452 (554)
T COG2759 390 IEKLCEE--------------HGVEVALSEVWAKGGEGGIELAKKVVEAIEQN---DSEFKRLYDVEDPIEEKIEKIAKE 452 (554)
T ss_pred HHHHHHH--------------cCCceeehhhhhccCccHHHHHHHHHHHHhCC---cccceeecccCCcHHHHHHHHHHH
Confidence 7655432 33333221110000111222333334443332 124445699999999999999988
Q ss_pred hh
Q 038167 182 TK 183 (292)
Q Consensus 182 ~~ 183 (292)
+-
T Consensus 453 iY 454 (554)
T COG2759 453 IY 454 (554)
T ss_pred hc
Confidence 64
No 99
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=23.47 E-value=2.2e+02 Score=28.09 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCC---CC----CCHHHHHHHHHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDN---FK----RTQNEIRYLMDLMLEKMEF 112 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN---~~----R~~~Ev~~Lm~l~~~~l~~ 112 (292)
..+.+.+.++++.++|+.++|+|.+..+. +. ...++...++....+.|.+
T Consensus 206 t~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~ 262 (430)
T PRK08208 206 THASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLE 262 (430)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999987533 11 2335555666666666543
No 100
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=23.40 E-value=97 Score=30.76 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEeeccCCC
Q 038167 62 AGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92 (292)
Q Consensus 62 ~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~ 92 (292)
+-.+.+.+-++...++++++||+|.+..+++
T Consensus 201 QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~ 231 (416)
T COG0635 201 QTLESLKEDLEQALELGPDHLSLYSLAIEPG 231 (416)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeeecCCC
Confidence 4678899999999999999999999999875
No 101
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=23.30 E-value=5.7e+02 Score=26.48 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=64.8
Q ss_pred cchhHHhHHHHHHHHHHHHHhCCCCe-EEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCC
Q 038167 56 EGAGHRAGFLTLMSLLKYCAELSVKY-VSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLG 134 (292)
Q Consensus 56 ~~~Gh~~G~~~l~~ii~wc~~~GI~~-vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~ 134 (292)
..+.-..|+..|.+.++-...+|++. |.+=.|++| +.+|++.+.+.+.+ .|+++.+.---.
T Consensus 334 n~~al~~G~~NL~~Hi~n~~~fg~p~VVaiN~F~~D----t~~Ei~~v~~~~~~--------------~g~~~~~~~~~~ 395 (524)
T cd00477 334 NLEALEKGFANLRKHIENIKKFGVPVVVAINKFSTD----TDAELALVRKLAEE--------------AGAFVAVSEHWA 395 (524)
T ss_pred CHHHHHhHHHHHHHHHHHHHHcCCCeEEEecCCCCC----CHHHHHHHHHHHHH--------------cCCCEEEehhhh
Confidence 34567889999999999999999998 566667766 68899888766532 344443331100
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhh
Q 038167 135 LVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTK 183 (292)
Q Consensus 135 ~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~ 183 (292)
.=.+--.+..+++.+..+... ++-.-|.--+.|.+-++.+|+++-
T Consensus 396 ~GG~Ga~eLA~~Vi~a~e~~s----~fk~LY~~~~si~eKIetIAk~IY 440 (524)
T cd00477 396 EGGKGAVELAEAVIEACEQPS----EFKFLYDLEDPLEDKIETIAKKIY 440 (524)
T ss_pred hhhhhHHHHHHHHHHHhcCCC----CCccccCCCCCHHHHHHHHHHHcc
Confidence 001111122222222222211 233458888889999999988853
No 102
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=23.08 E-value=1.9e+02 Score=28.79 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCC
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~ 92 (292)
..+.+.+-++.+.++|+.+||+|.++.+.-
T Consensus 212 T~e~~~~~l~~~~~l~p~~is~y~L~~~~~ 241 (433)
T PRK08629 212 TDEVLQHDLDIAKRLDPRQITTYPLMKSHQ 241 (433)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccceeccC
Confidence 467888899999999999999999987663
No 103
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.81 E-value=5.7e+02 Score=23.03 Aligned_cols=66 Identities=9% Similarity=0.200 Sum_probs=39.6
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec
Q 038167 59 GHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG 131 (292)
Q Consensus 59 Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG 131 (292)
......+.+.+.++.|.++|+++|.+-.+- .....+.++ -.+.+.+.+++++.. ..++||++-+-.
T Consensus 93 ~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~-~~~~~~~~~---~~~~~~~~l~~l~~~---A~~~GV~i~iE~ 158 (283)
T PRK13209 93 VRAQALEIMRKAIQLAQDLGIRVIQLAGYD-VYYEQANNE---TRRRFIDGLKESVEL---ASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCcc-ccccccHHH---HHHHHHHHHHHHHHH---HHHhCCEEEEee
Confidence 355677889999999999999999874321 111122222 223344455555432 346788876644
No 104
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=22.64 E-value=2.6e+02 Score=29.72 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhH-HHHHHHHHHHHHhCCCCeEEEEe
Q 038167 10 SKLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAG-FLTLMSLLKYCAELSVKYVSIYA 86 (292)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G-~~~l~~ii~wc~~~GI~~vSvYa 86 (292)
+.+.+.+..-+-+.+.+.+..+..|.||-++||+= + ..| +..+.+.+..+...||+.+.++-
T Consensus 364 ~pLl~L~~~qli~~l~~~~p~~~~~~~vl~lLDEF---------~------nlG~ip~l~~~la~~RgyGi~~~~I~Q 426 (670)
T PRK13850 364 APLMRLLFQQVVSILQRSLPGKDERHEVLFLLDEF---------K------HLGKLEAIETAITTIAGYKGRFMFIIQ 426 (670)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcceEEEEecc---------c------ccCchHHHHHHHHHhccCCcEEEEEEE
Confidence 44555555444444445555566788999999971 1 123 56788889999999999988883
No 105
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=22.49 E-value=3.3e+02 Score=24.06 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHH
Q 038167 64 FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDL 105 (292)
Q Consensus 64 ~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l 105 (292)
.....+.+..+.+.|++.|.|=+.||.++.=|+++...+|-.
T Consensus 113 ~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~ 154 (186)
T cd02904 113 EKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILK 154 (186)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHH
Confidence 455677788888999999999999999999999988777644
No 106
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=22.39 E-value=1.2e+02 Score=24.97 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=30.6
Q ss_pred CEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHH
Q 038167 35 NHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYL 102 (292)
Q Consensus 35 ~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~L 102 (292)
.-.|||..|||-|+..-++. .+ ..+.+.+|+.|--|.+|. ++++|..+
T Consensus 73 ~l~GVigSGNrNfg~~f~~a---------a~------~ia~ky~VPll~kfEl~G-----t~~Dv~~v 120 (122)
T PF07972_consen 73 LLRGVIGSGNRNFGDNFCLA---------AD------KIAEKYGVPLLYKFELSG-----TPEDVERV 120 (122)
T ss_dssp GEEEEEEEE-GGGGGGTTHH---------HH------HHHHHHT--EEEEEETT-------HHHHHHH
T ss_pred hheeEEecCCcHHHHHHHHH---------HH------HHHHHcCCCEEEEEecCC-----CHHHHHHH
Confidence 56899999999998765433 12 236778999999998887 34555443
No 107
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=22.34 E-value=7.4e+02 Score=25.88 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=58.5
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCCeEEE-EeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEe-----
Q 038167 57 GAGHRAGFLTLMSLLKYCAELSVKYVSI-YAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFI----- 130 (292)
Q Consensus 57 ~~Gh~~G~~~l~~ii~wc~~~GI~~vSv-YafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~i----- 130 (292)
.+.-..|+..|.+.++-+..+||+.|-. =-|.++ +.+|++.+.+.+. +.|+.+-+.
T Consensus 351 ~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~D----Te~Ei~~I~~~c~--------------e~Gv~va~~~~~~~ 412 (557)
T PRK13505 351 VEALKKGFANLERHIENIRKFGVPVVVAINKFVTD----TDAEIAALKELCE--------------ELGVEVALSEVWAK 412 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC----CHHHHHHHHHHHH--------------HcCCCEEEeccccc
Confidence 3456789999999999999999998544 444432 3458877755442 234543211
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhh
Q 038167 131 GNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTK 183 (292)
Q Consensus 131 Gd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~ 183 (292)
|---.+ ++.+++-++.+. +.. ++-+-|.....+.+.++.+++++.
T Consensus 413 Gg~Gai--~LA~aVveA~~~--~~s----~f~~lY~~d~sl~eKIe~IAkkIY 457 (557)
T PRK13505 413 GGEGGV--ELAEKVVELIEE--GES----NFKPLYDDEDSLEEKIEKIATKIY 457 (557)
T ss_pred CCcchH--HHHHHHHHHHhc--CCC----CCceecCCCCcHHHHHHHHHHHcc
Confidence 111111 222222222221 111 233458888888899999988853
No 108
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=22.20 E-value=5.3e+02 Score=25.06 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=56.6
Q ss_pred HHHHHhCCCCeEEEEee-----ccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEE--E---ecC--CCCC-C
Q 038167 71 LKYCAELSVKYVSIYAF-----SIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVC--F---IGN--LGLV-S 137 (292)
Q Consensus 71 i~wc~~~GI~~vSvYaf-----S~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~--~---iGd--~~~l-p 137 (292)
++.+.+.|+..|.+|.- +..|++++.+|+-..+.-+.++.+ +.|..++ + .|- -... |
T Consensus 127 ie~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak----------~~Gl~v~~~is~~fg~p~~~r~~~ 196 (347)
T PLN02746 127 FEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAK----------KHSIPVRGYVSCVVGCPIEGPVPP 196 (347)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH----------HcCCeEEEEEEeeecCCccCCCCH
Confidence 44567889999999842 235788999887766555444432 3455554 2 331 1223 4
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEEecCC--CHHHHHHHHHHHHHH
Q 038167 138 EPIRVTAEKVMRATSKNTRIVILICLAYS--STEEIVHTVEETCLV 181 (292)
Q Consensus 138 ~~~~~~i~~~e~~T~~~~~~~lni~~~Y~--Gr~EIv~a~~~l~~~ 181 (292)
+.+.+.++.+.+...+ .|+||-..| -=.++.+.++.+.+.
T Consensus 197 ~~l~~~~~~~~~~Gad----~I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 197 SKVAYVAKELYDMGCY----EISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHHHHHcCCC----EEEecCCcCCcCHHHHHHHHHHHHHh
Confidence 5566666666654332 456664444 445677767666554
No 109
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=22.06 E-value=1.2e+02 Score=28.26 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=34.2
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHH
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKME 111 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~ 111 (292)
+..|++|..++++.|.++|++.||+.+=+.-... ...|.......+.+.+.
T Consensus 80 ~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g-~~aE~~G~~~~ia~~~~ 130 (256)
T PRK12319 80 HPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPG-VGAEERGQGEAIARNLM 130 (256)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCC-HhHHhccHHHHHHHHHH
Confidence 4568999999999999999999999875543221 12333344444444433
No 110
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=21.97 E-value=2.2e+02 Score=23.82 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHH
Q 038167 64 FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLM 103 (292)
Q Consensus 64 ~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm 103 (292)
.....+.+..+.+.+++.|.+=++||..+.=|+++...++
T Consensus 103 ~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~ 142 (147)
T cd02906 103 AKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIA 142 (147)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHH
Confidence 4556777788889999999999999999999999887764
No 111
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=21.89 E-value=1.2e+02 Score=29.17 Aligned_cols=67 Identities=7% Similarity=0.163 Sum_probs=43.9
Q ss_pred cCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHh
Q 038167 42 DGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLL 114 (292)
Q Consensus 42 DGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~ 114 (292)
|...+-++.-|++ |-.||.+..++++.+-++|.+.|||-+=+.-=-.-..+|.- .=+.+-+.+.++.
T Consensus 119 dtk~~~~rNFGm~-----~PeGyRKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErG-Q~eAIA~nL~em~ 185 (317)
T COG0825 119 DTKEKLKRNFGMP-----RPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERG-QSEAIARNLREMA 185 (317)
T ss_pred cchhHHHhcCCCC-----CchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcc-cHHHHHHHHHHHh
Confidence 4455667777777 56677999999999999999999998754433333334432 2244444555544
No 112
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=21.80 E-value=2.5e+02 Score=22.19 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=25.7
Q ss_pred HHHhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEE
Q 038167 23 CVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSI 84 (292)
Q Consensus 23 ~l~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSv 84 (292)
.+.......+=+..|-+..|++ .-|..+.+++.-|.++|+..+++
T Consensus 81 ~l~~~~~~~~~~~~v~i~aD~~-----------------~~y~~vv~vl~~l~~~g~~~v~l 125 (130)
T PF02472_consen 81 RLKELKQKNPDPVRVLIRADKD-----------------APYQDVVDVLDALREAGFTKVSL 125 (130)
T ss_dssp HHHHHCCC-TTS--EEEEE-TT-----------------S-HHHHHHHHHHHHHTT---EE-
T ss_pred HHHHhhccCCCcceEEEEeCCC-----------------CCHHHHHHHHHHHHHcCCCEEEE
Confidence 3333444333334788999973 24688999999999999999875
No 113
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=21.64 E-value=2.2e+02 Score=21.74 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=27.8
Q ss_pred CCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeecc
Q 038167 32 VIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSI 89 (292)
Q Consensus 32 ~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~ 89 (292)
..+.+|+||.=| |. .+...+..+..+||+++.+++.-.
T Consensus 29 ~~~~~i~ii~~g-------------------G~-~~~~~~~ll~~~~i~~~vi~D~D~ 66 (97)
T cd01026 29 LDEAGISIIPVG-------------------GK-NFKPFIKLLNALGIPVAVLTDLDA 66 (97)
T ss_pred HHHCCEEEEEeC-------------------Cc-chHHHHHHHHHcCCCEEEEEeCCC
Confidence 345789998876 22 455557788889999999998633
No 114
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=21.42 E-value=1.2e+02 Score=27.95 Aligned_cols=48 Identities=10% Similarity=0.295 Sum_probs=34.7
Q ss_pred CCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEe
Q 038167 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYA 86 (292)
Q Consensus 33 iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYa 86 (292)
-|.-|.+||+...---...|++ . ....+.|.+++.-+.+.||+ ||+|.
T Consensus 83 kP~~vtLVPEkr~E~TTegGld-v----~~~~~~l~~~i~~l~~~gI~-VSLFi 130 (234)
T cd00003 83 KPHQVTLVPEKREELTTEGGLD-V----AGQAEKLKPIIERLKDAGIR-VSLFI 130 (234)
T ss_pred CCCEEEECCCCCCCccCCccch-h----hcCHHHHHHHHHHHHHCCCE-EEEEe
Confidence 3899999999643333334444 2 12457899999999999996 99996
No 115
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.28 E-value=6.1e+02 Score=22.87 Aligned_cols=65 Identities=8% Similarity=0.171 Sum_probs=41.4
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCC-CCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec
Q 038167 59 GHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF-KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG 131 (292)
Q Consensus 59 Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~-~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG 131 (292)
-...+.+.+.+.++.|.++|++.|.+... +.+ .... ...++.+.+.+++++. ...++||++-+-.
T Consensus 88 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~---~~~~~~~~~~l~~l~~---~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 88 VRQQGLEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHD---EETRRRFREGLKEAVE---LAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEecCc--ccccCcCC---HHHHHHHHHHHHHHHH---HHHHcCCEEEEee
Confidence 34567888999999999999999987532 111 1111 2234445556666554 2446888876653
No 116
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=21.26 E-value=2.2e+02 Score=28.88 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEeeccCC----------CCC-CHHHHHHHHHHHHHHHHH
Q 038167 62 AGFLTLMSLLKYCAELSVKYVSIYAFSIDN----------FKR-TQNEIRYLMDLMLEKMEF 112 (292)
Q Consensus 62 ~G~~~l~~ii~wc~~~GI~~vSvYafS~eN----------~~R-~~~Ev~~Lm~l~~~~l~~ 112 (292)
.+.+.+.+.++.+.++++.++|+|.++... ..- +.+|...+++...+.+.+
T Consensus 333 Et~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~ 394 (488)
T PRK08207 333 EGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKE 394 (488)
T ss_pred CCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 357888899999999999999999998633 111 245666777777766654
No 117
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.22 E-value=9e+02 Score=24.79 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=21.4
Q ss_pred CCcEEEeecCCcccCCccccccC-c-----eeEEecCCC
Q 038167 230 NPDILIRTSGENRLSNFLLWQSS-N-----CMLYSPAAL 262 (292)
Q Consensus 230 ~pDLlIRTsge~RLS~FLlWQs~-y-----sEl~F~~~~ 262 (292)
+.|+||=.++...+|.--...+. | .=++|.+..
T Consensus 234 d~d~LvI~~P~~~ls~~e~~~Ldqfl~~GG~ll~~~dp~ 272 (552)
T TIGR03521 234 KFDLIVIAKPTEAFSEREKYILDQYIMNGGKALFLVDAV 272 (552)
T ss_pred CcCEEEEeCCCccCCHHHHHHHHHHHHcCCeEEEEecCc
Confidence 68999999987788854444332 2 336666643
No 118
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=21.07 E-value=98 Score=27.38 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.2
Q ss_pred HHHHHHhCCCCeEEEEeec---cCCCCCC
Q 038167 70 LLKYCAELSVKYVSIYAFS---IDNFKRT 95 (292)
Q Consensus 70 ii~wc~~~GI~~vSvYafS---~eN~~R~ 95 (292)
++.++...||..++++++. ..|++|.
T Consensus 36 ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq 64 (200)
T TIGR02354 36 VAINLARAGIGKLILVDFDVVEPSNLNRQ 64 (200)
T ss_pred HHHHHHHcCCCEEEEECCCEEcccccccc
Confidence 5666778899999999998 8999884
No 119
>COG3511 PlcC Phospholipase C [Cell envelope biogenesis, outer membrane]
Probab=20.61 E-value=1.4e+02 Score=30.69 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=12.1
Q ss_pred CEEEEEecCCchHH
Q 038167 35 NHIAFILDGNRRFA 48 (292)
Q Consensus 35 ~HIaiImDGNRR~A 48 (292)
+||.|||-+||-|=
T Consensus 49 eHVVilmqENRsFD 62 (527)
T COG3511 49 EHVVILMQENRSFD 62 (527)
T ss_pred eEEEEEEeccccch
Confidence 89999999998654
No 120
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.53 E-value=3.1e+02 Score=26.40 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCC
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDN 91 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN 91 (292)
..+.+.+.++++.++++.++|+|.++.+.
T Consensus 168 t~e~~~~tl~~~~~l~p~~is~y~L~~~~ 196 (353)
T PRK05904 168 KLKDLDEVFNFILKHKINHISFYSLEIKE 196 (353)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeEecC
Confidence 56888899999999999999999998754
No 121
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.49 E-value=65 Score=28.00 Aligned_cols=19 Identities=42% Similarity=0.686 Sum_probs=18.2
Q ss_pred EEEEEecCCchHHHhcCCC
Q 038167 36 HIAFILDGNRRFAKKHNLA 54 (292)
Q Consensus 36 HIaiImDGNRR~A~~~gl~ 54 (292)
||-+|+|||.-|.|..|+.
T Consensus 99 ~I~fi~Dg~geFTk~~Gm~ 117 (165)
T COG0678 99 NIKFIPDGNGEFTKAMGML 117 (165)
T ss_pred cEEEecCCCchhhhhcCce
Confidence 9999999999999999986
No 122
>COG2056 Predicted permease [General function prediction only]
Probab=20.43 E-value=1.1e+02 Score=30.44 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=16.0
Q ss_pred HHHhhcCCCCCCCEEEEEec
Q 038167 23 CVFGILSVGVIPNHIAFILD 42 (292)
Q Consensus 23 ~l~~~l~~~~iP~HIaiImD 42 (292)
.+....+++-||-|||||+=
T Consensus 109 ~~~a~~SQNliPVHIAFIPi 128 (444)
T COG2056 109 LLIACFSQNLIPVHIAFIPI 128 (444)
T ss_pred HHHHHhcCCccceeeeeehh
Confidence 34566778889999999985
No 123
>PRK14976 5'-3' exonuclease; Provisional
Probab=20.38 E-value=97 Score=29.07 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=37.9
Q ss_pred HHhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhH-----HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHH
Q 038167 24 VFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAG-----FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNE 98 (292)
Q Consensus 24 l~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G-----~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~E 98 (292)
+.+++... -|.|++++.|+.+.-=|..=.+ ...+++.. ...+..+-+++..+||+.+..-. .|
T Consensus 46 l~~ll~~~-~p~~~~v~fD~~~~~~R~~l~p-~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~g----------~E 113 (281)
T PRK14976 46 IFKILKKL-NPSYILIAFDAGRKTFRHQLYD-EYKQGRKKTPESLISQIPLLKKILKLAGIKWEEQPG----------YE 113 (281)
T ss_pred HHHHHHhc-CCCEEEEEEECCCCcccccccH-HHhcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecCC----------cC
Confidence 34444433 3899999999854211222222 22222211 12233344456668998886532 35
Q ss_pred HHHHHHHHHHHH
Q 038167 99 IRYLMDLMLEKM 110 (292)
Q Consensus 99 v~~Lm~l~~~~l 110 (292)
=+.++-.+....
T Consensus 114 ADDviatla~~~ 125 (281)
T PRK14976 114 ADDLIGSLAKKL 125 (281)
T ss_pred HHHHHHHHHHHH
Confidence 555655554443
No 124
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=20.29 E-value=3.9e+02 Score=23.11 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
....+.+....+.++||++ +.-.---.|.++++..+.+
T Consensus 10 D~~~~~~a~~~L~~~gi~~----dv~V~SaHRtp~~~~~~~~ 47 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPY----ELRVVSAHRTPELMLEYAK 47 (156)
T ss_pred hHHHHHHHHHHHHHcCCCe----EEEEECcccCHHHHHHHHH
Confidence 4566778888889999993 3322234689987766654
No 125
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=20.26 E-value=7.9e+02 Score=25.79 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=63.2
Q ss_pred cchhHHhHHHHHHHHHHHHHhCCCCe-EEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCC
Q 038167 56 EGAGHRAGFLTLMSLLKYCAELSVKY-VSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLG 134 (292)
Q Consensus 56 ~~~Gh~~G~~~l~~ii~wc~~~GI~~-vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~ 134 (292)
..+.-..|+..|...++-...+|++. |.+=.|+++ +.+|++.+.+.+.+ .|+++-+.---.
T Consensus 379 nl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~D----t~~Ei~~l~~~~~~--------------~g~~~~v~~~wa 440 (587)
T PRK13507 379 NVGLVEKGCANLLHHIGTVKKSGINPVVCINAFYTD----THAEIAIVRRLAEQ--------------AGARVAVSRHWE 440 (587)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCC----CHHHHHHHHHHHHH--------------cCCCEEEechhh
Confidence 34566789999999999999999998 455566655 67899888766532 234333221111
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhh
Q 038167 135 LVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTK 183 (292)
Q Consensus 135 ~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~ 183 (292)
.=.+--.+..+++.+..+.... +-.-|.-.+.|.+-++.+|+++-
T Consensus 441 ~GGeGa~eLA~~Vv~a~e~~s~----fk~LYd~~~sI~EKIetIAkeIY 485 (587)
T PRK13507 441 KGGEGALELADAVIDACNEPND----FKFLYPLEMPLRERIETIAREVY 485 (587)
T ss_pred ccchhHHHHHHHHHHHhhCcCC----CcccCCCCCCHHHHHHHHHHHcc
Confidence 1011122222233333232222 23348888889999999988853
No 126
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=20.17 E-value=2.1e+02 Score=22.84 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=24.9
Q ss_pred hHHhHHHHHHHHHHHH-HhCCCCeEEEEeecc
Q 038167 59 GHRAGFLTLMSLLKYC-AELSVKYVSIYAFSI 89 (292)
Q Consensus 59 Gh~~G~~~l~~ii~wc-~~~GI~~vSvYafS~ 89 (292)
|...|-.-+..++.+| .+.|++.+++..++.
T Consensus 90 ~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~ 121 (155)
T PF13420_consen 90 GKGIGRKLLDELIEYAFKELGIHKIYLEVFSS 121 (155)
T ss_dssp TSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT
T ss_pred CCcHHHHHHHHHHHHhhhccCeEEEEEEEecC
Confidence 3344777889999999 999999999998875
No 127
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=20.07 E-value=3.8e+02 Score=26.35 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEe
Q 038167 10 SKLCRKLGVFMRKCVFGILS-VGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYA 86 (292)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~l~-~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYa 86 (292)
..+.+.+.+.+...+.+... .++.|.+|-|++|+= + .-|+ +..+.+.+..+...||..+.++-
T Consensus 277 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~v~~lLDEf---------~--nlg~---i~~~~~~l~~~Rs~gi~~~~i~Q 340 (469)
T PF02534_consen 277 GPLLRLFIQQIIRLLRRAAPREKGRPKPVLFLLDEF---------A--NLGR---IPNFEEALSTGRSYGIRFWLIVQ 340 (469)
T ss_pred HHHHHHHHHHHHHHHHHhchhhccccceeEEEecCc---------c--cccc---HHHHHHHHHHHhhCCcEEEEEEE
Confidence 34555555544444444333 345677899999972 1 1122 46678889999999999999984
No 128
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=20.04 E-value=3.5e+02 Score=22.35 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCCCeEEEEe--eccCCCCCCHHHHHHHHH
Q 038167 65 LTLMSLLKYCAELSVKYVSIYA--FSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 65 ~~l~~ii~wc~~~GI~~vSvYa--fS~eN~~R~~~Ev~~Lm~ 104 (292)
.....+-.||...|++.+-+|. .|..+.+||. ...|++
T Consensus 16 ~Q~~~l~~~a~~~g~~~~~i~~d~~SG~~~~Rp~--~~~ll~ 55 (146)
T cd03767 16 RAKESLEAFATERGFYIAGFYVENASGAKLDRPE--LFRLLD 55 (146)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCcCCCCCCHH--HHHHHH
Confidence 3456677889999998777775 4555556643 444444
Done!