Query 038167
Match_columns 292
No_of_seqs 114 out of 1096
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h8e_A Undecaprenyl pyrophosph 100.0 1.2E-88 4E-93 619.1 23.6 238 27-290 18-255 (256)
2 3sgv_B Undecaprenyl pyrophosph 100.0 2.1E-88 7.3E-93 616.5 22.3 235 31-291 15-249 (253)
3 3ugs_B Undecaprenyl pyrophosph 100.0 2.2E-86 7.6E-91 594.1 24.1 222 31-287 4-225 (225)
4 2d2r_A Undecaprenyl pyrophosph 100.0 2.2E-85 7.6E-90 596.5 22.4 233 30-289 12-244 (245)
5 1f75_A Undecaprenyl pyrophosph 100.0 3.6E-85 1.2E-89 596.7 20.3 236 27-288 14-249 (249)
6 3qas_B Undecaprenyl pyrophosph 100.0 8.5E-85 2.9E-89 594.9 22.2 240 25-290 5-248 (253)
7 2vg3_A Undecaprenyl pyrophosph 100.0 4.9E-84 1.7E-88 597.3 24.2 237 25-287 47-283 (284)
8 2vg0_A Short-chain Z-isoprenyl 100.0 7.1E-82 2.4E-86 568.7 23.2 222 32-281 1-227 (227)
9 3dx5_A Uncharacterized protein 65.9 26 0.0009 30.1 8.7 66 60-132 79-144 (286)
10 2ftp_A Hydroxymethylglutaryl-C 61.3 90 0.0031 27.8 11.7 99 69-181 87-200 (302)
11 1ydo_A HMG-COA lyase; TIM-barr 58.1 95 0.0033 28.0 11.3 98 71-182 87-199 (307)
12 3s5o_A 4-hydroxy-2-oxoglutarat 55.8 1.1E+02 0.0038 27.4 11.3 105 63-182 33-141 (307)
13 2wkj_A N-acetylneuraminate lya 52.9 1.3E+02 0.0044 27.0 13.5 106 63-183 30-137 (303)
14 3tc3_A UV damage endonuclease; 52.2 53 0.0018 30.2 8.4 104 61-171 56-173 (310)
15 2zds_A Putative DNA-binding pr 51.8 1.2E+02 0.004 26.5 10.7 67 62-131 108-180 (340)
16 2vc6_A MOSA, dihydrodipicolina 50.2 1.4E+02 0.0047 26.5 11.0 105 63-182 19-125 (292)
17 2v9d_A YAGE; dihydrodipicolini 48.8 1.6E+02 0.0055 26.9 12.4 105 63-182 50-156 (343)
18 3b4u_A Dihydrodipicolinate syn 48.7 1.3E+02 0.0045 26.7 10.5 105 63-182 22-129 (294)
19 3na8_A Putative dihydrodipicol 47.3 1.6E+02 0.0055 26.5 11.2 105 63-182 43-149 (315)
20 2rfg_A Dihydrodipicolinate syn 46.6 1.6E+02 0.0054 26.2 11.3 105 63-182 19-125 (297)
21 3qfe_A Putative dihydrodipicol 46.4 1.7E+02 0.0057 26.4 12.1 105 63-182 30-138 (318)
22 3fkr_A L-2-keto-3-deoxyarabona 46.1 1.7E+02 0.0056 26.3 11.7 105 63-182 27-136 (309)
23 2hk0_A D-psicose 3-epimerase; 45.7 1.2E+02 0.0043 26.2 9.7 66 60-131 102-171 (309)
24 3l21_A DHDPS, dihydrodipicolin 45.5 1.7E+02 0.0057 26.2 12.9 105 63-182 34-140 (304)
25 2yxg_A DHDPS, dihydrodipicolin 44.3 1.7E+02 0.0057 25.9 13.3 105 63-182 19-125 (289)
26 3si9_A DHDPS, dihydrodipicolin 44.3 1.8E+02 0.0061 26.2 11.5 105 63-182 41-147 (315)
27 3pzj_A Probable acetyltransfer 44.2 48 0.0016 26.7 6.3 35 56-91 130-164 (209)
28 3flu_A DHDPS, dihydrodipicolin 43.6 1.8E+02 0.006 25.9 12.6 105 63-182 26-132 (297)
29 2ehh_A DHDPS, dihydrodipicolin 43.4 1.8E+02 0.006 25.8 12.9 105 63-182 19-125 (294)
30 1f6k_A N-acetylneuraminate lya 43.2 1.8E+02 0.006 25.8 13.6 105 63-182 22-129 (293)
31 1r4g_A RNA polymerase alpha su 42.9 20 0.00067 24.1 2.8 20 94-113 32-51 (53)
32 3m5v_A DHDPS, dihydrodipicolin 41.6 1.9E+02 0.0065 25.7 12.4 106 63-182 26-133 (301)
33 1o5k_A DHDPS, dihydrodipicolin 40.5 2E+02 0.0068 25.7 12.4 105 63-182 31-137 (306)
34 3d0c_A Dihydrodipicolinate syn 40.3 1.8E+02 0.0061 26.1 10.1 104 63-182 31-136 (314)
35 3daq_A DHDPS, dihydrodipicolin 40.1 2E+02 0.0068 25.5 13.3 106 62-182 20-127 (292)
36 3cpr_A Dihydrodipicolinate syn 39.6 2.1E+02 0.007 25.5 13.7 105 63-182 35-141 (304)
37 3bdk_A D-mannonate dehydratase 39.4 92 0.0031 29.2 8.1 115 60-179 99-277 (386)
38 1exn_A 5'-exonuclease, 5'-nucl 39.1 26 0.00088 31.8 4.1 50 34-84 59-123 (290)
39 2qul_A D-tagatose 3-epimerase; 38.2 1.2E+02 0.0042 25.6 8.3 28 60-87 83-110 (290)
40 3a5f_A Dihydrodipicolinate syn 38.2 1.6E+02 0.0056 26.0 9.4 105 62-181 19-125 (291)
41 3l23_A Sugar phosphate isomera 37.9 99 0.0034 27.1 7.8 59 61-129 104-164 (303)
42 2ojp_A DHDPS, dihydrodipicolin 37.7 2.1E+02 0.0073 25.2 11.1 105 63-182 20-126 (292)
43 2r8w_A AGR_C_1641P; APC7498, d 36.8 2.4E+02 0.0082 25.5 12.2 105 63-182 53-159 (332)
44 3tak_A DHDPS, dihydrodipicolin 35.9 2.3E+02 0.0078 25.0 12.6 105 63-182 20-126 (291)
45 3qze_A DHDPS, dihydrodipicolin 35.6 2.4E+02 0.0083 25.2 12.1 105 63-182 42-148 (314)
46 1xky_A Dihydrodipicolinate syn 35.3 2.4E+02 0.0082 25.1 12.4 105 63-182 31-137 (301)
47 3u0h_A Xylose isomerase domain 35.0 1.2E+02 0.0041 25.5 7.7 63 60-130 79-141 (281)
48 3eb2_A Putative dihydrodipicol 34.4 1.8E+02 0.006 26.0 9.0 105 63-182 23-129 (300)
49 3obe_A Sugar phosphate isomera 34.0 1.4E+02 0.0048 26.1 8.2 59 61-129 110-168 (305)
50 3ayv_A Putative uncharacterize 33.6 2.1E+02 0.007 23.8 9.2 81 59-144 70-150 (254)
51 4dpp_A DHDPS 2, dihydrodipicol 33.5 2.9E+02 0.01 25.5 10.9 104 63-181 78-183 (360)
52 3gqe_A Non-structural protein 33.5 57 0.0019 27.1 5.1 42 65-106 89-130 (168)
53 3sig_A PArg, poly(ADP-ribose) 32.5 71 0.0024 28.8 5.9 41 64-104 197-237 (277)
54 3dz1_A Dihydrodipicolinate syn 32.2 2.7E+02 0.0094 24.8 12.9 104 63-183 27-132 (313)
55 3qxb_A Putative xylose isomera 32.2 96 0.0033 27.1 6.7 67 59-129 108-177 (316)
56 3h5d_A DHDPS, dihydrodipicolin 32.1 2.8E+02 0.0095 24.8 10.4 105 64-182 27-133 (311)
57 3ble_A Citramalate synthase fr 32.1 2.4E+02 0.0081 25.6 9.6 98 71-182 102-211 (337)
58 3e96_A Dihydrodipicolinate syn 31.5 2.8E+02 0.0097 24.8 10.5 104 63-182 31-136 (316)
59 3guv_A Site-specific recombina 29.3 2.1E+02 0.0072 22.6 7.9 74 65-152 26-103 (167)
60 2r91_A 2-keto-3-deoxy-(6-phosp 29.1 2.9E+02 0.01 24.2 12.1 102 63-182 17-121 (286)
61 1olt_A Oxygen-independent copr 29.1 1.1E+02 0.0038 28.8 6.9 50 63-112 218-279 (457)
62 3tva_A Xylose isomerase domain 28.5 2E+02 0.0068 24.4 8.0 63 59-131 96-159 (290)
63 3cqj_A L-ribulose-5-phosphate 28.2 2.8E+02 0.0094 23.6 9.9 64 60-131 103-167 (295)
64 3q71_A Poly [ADP-ribose] polym 27.2 1.9E+02 0.0064 25.0 7.5 41 64-104 134-174 (221)
65 2ge3_A Probable acetyltransfer 27.1 85 0.0029 23.8 4.9 35 56-91 96-130 (170)
66 2cw6_A Hydroxymethylglutaryl-C 26.9 3.3E+02 0.011 24.0 11.6 98 71-182 86-198 (298)
67 3zym_A Phosphatidylinositol-bi 26.9 80 0.0027 28.7 5.3 54 63-116 250-306 (310)
68 3kh6_A Poly [ADP-ribose] polym 26.6 1.7E+02 0.0059 24.8 7.0 40 65-104 115-154 (199)
69 1tz9_A Mannonate dehydratase; 26.6 92 0.0032 28.2 5.7 25 60-84 90-114 (367)
70 2vzy_A RV0802C; transferase, G 26.6 99 0.0034 24.7 5.4 32 57-88 117-149 (218)
71 4abl_A Poly [ADP-ribose] polym 26.3 1.8E+02 0.0062 24.2 7.0 41 64-104 103-143 (183)
72 3fbu_A Acetyltransferase, GNAT 25.9 1.1E+02 0.0036 22.9 5.2 33 56-88 93-126 (168)
73 3bvp_A INT, TP901-1 integrase; 25.6 1.1E+02 0.0039 23.5 5.4 62 65-142 25-89 (138)
74 2cw6_A Hydroxymethylglutaryl-C 24.6 1.3E+02 0.0043 26.7 6.1 44 63-109 154-197 (298)
75 3qc0_A Sugar isomerase; TIM ba 24.3 3E+02 0.01 22.7 10.7 111 59-180 77-196 (275)
76 1i60_A IOLI protein; beta barr 24.1 3.1E+02 0.01 22.7 11.9 65 60-131 79-143 (278)
77 2q02_A Putative cytoplasmic pr 23.9 2.8E+02 0.0094 23.0 8.0 101 45-159 57-169 (272)
78 2j8m_A Acetyltransferase PA486 23.7 1.3E+02 0.0043 23.0 5.3 33 56-88 93-125 (172)
79 2nuw_A 2-keto-3-deoxygluconate 23.6 3.7E+02 0.013 23.5 10.0 102 63-182 18-122 (288)
80 3vni_A Xylose isomerase domain 23.3 3.4E+02 0.011 22.9 9.1 66 60-131 83-152 (294)
81 2x7v_A Probable endonuclease 4 22.9 2.6E+02 0.0089 23.4 7.7 62 60-131 84-145 (287)
82 3ivs_A Homocitrate synthase, m 22.6 4.9E+02 0.017 24.6 11.7 97 71-181 116-221 (423)
83 1spv_A Putative polyprotein/ph 22.6 2.4E+02 0.0081 23.3 7.1 41 64-104 98-138 (184)
84 1qtw_A Endonuclease IV; DNA re 22.6 3.4E+02 0.012 22.6 8.4 62 60-130 84-145 (285)
85 2eee_A Uncharacterized protein 22.5 1.2E+02 0.004 24.2 5.0 42 63-104 93-134 (149)
86 3lp6_A Phosphoribosylaminoimid 22.4 2.8E+02 0.0095 23.2 7.4 71 36-139 9-79 (174)
87 2jyc_A Uncharacterized protein 22.4 1.4E+02 0.0049 24.2 5.5 42 63-104 104-145 (160)
88 3ngf_A AP endonuclease, family 22.4 3.4E+02 0.012 22.7 10.7 63 60-130 88-150 (269)
89 2dx6_A Hypothetical protein TT 22.2 1.5E+02 0.005 23.8 5.5 42 63-104 89-130 (159)
90 3igr_A Ribosomal-protein-S5-al 22.2 1.3E+02 0.0045 22.7 5.1 33 56-88 106-139 (184)
91 4b4k_A N5-carboxyaminoimidazol 21.8 3.6E+02 0.012 22.7 7.9 45 37-102 25-69 (181)
92 3trh_A Phosphoribosylaminoimid 21.8 3.2E+02 0.011 22.8 7.5 47 36-103 8-54 (169)
93 2xd7_A Core histone macro-H2A. 21.6 2.4E+02 0.0081 23.5 6.9 41 64-104 115-155 (193)
94 3ors_A N5-carboxyaminoimidazol 21.3 2.4E+02 0.0081 23.4 6.6 69 36-139 5-75 (163)
95 4grd_A N5-CAIR mutase, phospho 21.3 2E+02 0.0069 24.1 6.2 69 36-139 14-84 (173)
96 3aal_A Probable endonuclease 4 21.2 2.4E+02 0.0081 24.3 7.2 61 60-130 89-149 (303)
97 3tcv_A GCN5-related N-acetyltr 21.1 1.9E+02 0.0065 24.1 6.4 35 56-91 137-172 (246)
98 3r9f_A MCCE protein; microcin 21.0 1.5E+02 0.005 22.7 5.2 35 56-91 114-149 (188)
99 2i79_A Acetyltransferase, GNAT 20.7 1.4E+02 0.0049 22.6 5.1 35 56-91 97-132 (172)
100 3cny_A Inositol catabolism pro 20.4 3.8E+02 0.013 22.5 12.8 26 61-86 86-111 (301)
101 1xmp_A PURE, phosphoribosylami 20.3 2.5E+02 0.0084 23.5 6.6 46 36-102 13-58 (170)
102 3aam_A Endonuclease IV, endoiv 20.3 2.7E+02 0.0091 23.3 7.2 56 60-130 83-139 (270)
103 1yre_A Hypothetical protein PA 20.3 1.8E+02 0.0063 22.4 5.7 33 56-88 107-140 (197)
104 2fck_A Ribosomal-protein-serin 20.1 1.3E+02 0.0046 22.5 4.7 32 57-88 109-141 (181)
105 1xla_A D-xylose isomerase; iso 20.1 1.1E+02 0.0038 28.0 4.9 65 59-129 110-179 (394)
No 1
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.2e-88 Score=619.14 Aligned_cols=238 Identities=30% Similarity=0.528 Sum_probs=226.3
Q ss_pred hcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHH
Q 038167 27 ILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLM 106 (292)
Q Consensus 27 ~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~ 106 (292)
.+..+++|+|||||||||||||+++|++ ...||..|++++.++++||.++||++||+||||||||+||++||++||+++
T Consensus 18 ~~~~~~iP~HVAiIMDGN~RwAk~rgl~-r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~ 96 (256)
T 4h8e_A 18 ELDSSNIPEHIAIIMDGNGRWAKKRKMP-RIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLP 96 (256)
T ss_dssp -CCTTCCCSEEEEECCCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHH
T ss_pred hccCCCCCCEEEEEcCCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHH
Confidence 4677899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccC
Q 038167 107 LEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQ 186 (292)
Q Consensus 107 ~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~ 186 (292)
.+++.+.+. .++++||||+++||++.||+++++.++++++.|++|++++||||++||||+||++|++++++++..+.
T Consensus 97 ~~~l~~~~~---~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v~~g~ 173 (256)
T 4h8e_A 97 VNFLKTFLP---ELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQG 173 (256)
T ss_dssp HHHHHHHHH---HHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH---HHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHcCC
Confidence 999988764 36789999999999999999999999999999999999999999999999999999999999976421
Q ss_pred CCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCC
Q 038167 187 PQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEI 266 (292)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf 266 (292)
++|++||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||
T Consensus 174 ----------------------l~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF 231 (256)
T 4h8e_A 174 ----------------------LNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDF 231 (256)
T ss_dssp ----------------------CCGGGCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGC
T ss_pred ----------------------CChhhCCHHHHHHhCCCCCCCCCcEEEEcCCCCcccCchHHHHcCeEEEECCCCCccC
Confidence 5788999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhc
Q 038167 267 GLRHLIWAILNFQRHHAYLEKKKK 290 (292)
Q Consensus 267 ~~~df~~al~~yq~r~~r~gk~~~ 290 (292)
+.+||.+||.+||+|++|||+.++
T Consensus 232 ~~~dl~~Ai~~yq~R~RRfG~~~~ 255 (256)
T 4h8e_A 232 DEDELIKCIKIYQSRQRRFGGLSE 255 (256)
T ss_dssp CHHHHHHHHHHHHHCCCCTTCC--
T ss_pred CHHHHHHHHHHHHhhhhccCCCCC
Confidence 999999999999999999999875
No 2
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=100.00 E-value=2.1e-88 Score=616.48 Aligned_cols=235 Identities=27% Similarity=0.438 Sum_probs=206.1
Q ss_pred CCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHH
Q 038167 31 GVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKM 110 (292)
Q Consensus 31 ~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l 110 (292)
+++|+|||||||||||||+++|++ ...||+.|++++.++++||.++||++|||||||||||+||++||++||+++.+++
T Consensus 15 ~~iP~HVAiIMDGNrRwAk~rgl~-r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l 93 (253)
T 3sgv_B 15 AHGCRHVAIIMDGNGRWAKKQGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWAL 93 (253)
T ss_dssp TTCCSEEEEEECCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHHTTH
T ss_pred CCCCCEEEEEecCcHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHHHHH
Confidence 679999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCC
Q 038167 111 EFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAF 190 (292)
Q Consensus 111 ~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~ 190 (292)
.+... .++++||||+++||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++..+.
T Consensus 94 ~~~~~---~l~~~~vrvr~iGd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v~~g~---- 166 (253)
T 3sgv_B 94 DSEVK---SLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGN---- 166 (253)
T ss_dssp HHHHH---HHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHHHHTS----
T ss_pred HHHHH---HHHHCCeEEEEEeehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCC----
Confidence 87554 47789999999999999999999999999999999999999999999999999999999999876421
Q ss_pred CCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHHH
Q 038167 191 KPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRH 270 (292)
Q Consensus 191 ~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~d 270 (292)
++|++||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+.+|
T Consensus 167 ------------------l~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyFtd~lWPdF~~~d 228 (253)
T 3sgv_B 167 ------------------LQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQD 228 (253)
T ss_dssp ------------------SCGGGCCHHHHHTTSTTTTSCCCCEEEEESSCCCCTTSCSGGGTTCEEEECCSCGGGCCHHH
T ss_pred ------------------CChhhCCHHHHHHhhcccCCCCCcEEEEecCCCcccCchHHHHcCEEEEECCCCCccCCHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcc
Q 038167 271 LIWAILNFQRHHAYLEKKKKQ 291 (292)
Q Consensus 271 f~~al~~yq~r~~r~gk~~~~ 291 (292)
|.+||.+||+|++|||+...|
T Consensus 229 l~~Ai~~yq~R~RRfG~~~~~ 249 (253)
T 3sgv_B 229 FEGALNAFANRERRFGGTEPG 249 (253)
T ss_dssp HHHHHHHHHHHC---------
T ss_pred HHHHHHHHHhhhccCCCCccc
Confidence 999999999999999998665
No 3
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=100.00 E-value=2.2e-86 Score=594.12 Aligned_cols=222 Identities=26% Similarity=0.474 Sum_probs=198.5
Q ss_pred CCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHH
Q 038167 31 GVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKM 110 (292)
Q Consensus 31 ~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l 110 (292)
..+|+|||||||||||||+++|++ ...||++|++++.++++||.++||++||+||||||||+||++||++||+++.+++
T Consensus 4 m~~P~HVAiIMDGNrRwAk~rgl~-r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l 82 (225)
T 3ugs_B 4 MNELKHLAVVMDGNRRWARAKGFL-AKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCL 82 (225)
T ss_dssp CCCCCEEEEEECCCC---------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEeccCcHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCC
Q 038167 111 EFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAF 190 (292)
Q Consensus 111 ~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~ 190 (292)
.+... .++++||||+++||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++.
T Consensus 83 ~~~~~---~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~iv~~--------- 150 (225)
T 3ugs_B 83 DEALE---KFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEK--------- 150 (225)
T ss_dssp HHHHH---HSTTTTEEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHT---------
T ss_pred HHHHH---HHHHCCcEEEEEeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHHHHh---------
Confidence 87654 478999999999999999999999999999999999999999999999999999999999543
Q ss_pred CCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHHH
Q 038167 191 KPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRH 270 (292)
Q Consensus 191 ~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~d 270 (292)
. ++||++.|+++|+++ ||||||||||||+|||||||||++||||||++++||||+.+|
T Consensus 151 -------------------g-~~I~e~~i~~~L~t~--PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~~ 208 (225)
T 3ugs_B 151 -------------------K-LELNEENLTQNLDLP--LDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKRE 208 (225)
T ss_dssp -------------------T-CCCSHHHHHHTSSSC--SCCSEEEEESSCCSCTTSSTTTTTTCEEEEECSCSTTCCHHH
T ss_pred -------------------c-CcCCHHHHHHhcCCC--CCCCEEEEeCCcccccCcchhhhhceEEEECCCCCccCCHHH
Confidence 1 468999999999987 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhh
Q 038167 271 LIWAILNFQRHHAYLEK 287 (292)
Q Consensus 271 f~~al~~yq~r~~r~gk 287 (292)
|.+||.+||+|++|||+
T Consensus 209 l~~Ai~~y~~R~RRfG~ 225 (225)
T 3ugs_B 209 FKRIIKEFRNRERTFGK 225 (225)
T ss_dssp HHHHHHHHHHSCCCTTC
T ss_pred HHHHHHHHHhhhccCCC
Confidence 99999999999999995
No 4
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00 E-value=2.2e-85 Score=596.52 Aligned_cols=233 Identities=29% Similarity=0.450 Sum_probs=206.6
Q ss_pred CCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHH
Q 038167 30 VGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEK 109 (292)
Q Consensus 30 ~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~ 109 (292)
.+++|+|||||||||||||+++|++ ...||..|++++.+++.||.++||++|||||||||||+||++||++||+++.++
T Consensus 12 l~~iP~HVAiImDGN~RwAk~~gl~-~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~ 90 (245)
T 2d2r_A 12 LDSTLKHLAIIMDGNGRWAKLKNKA-RAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKY 90 (245)
T ss_dssp --CCCCEEEEECCCHHHHHHTTTCC-HHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHH
T ss_pred cCCCCCEEEEEecCchHHHHHCCCC-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCC
Q 038167 110 MEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQA 189 (292)
Q Consensus 110 l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~ 189 (292)
+.+.+.+ ++++||+|+++||++.||+++++.++++++.|++|++++||||++||||+||++|++++++++..
T Consensus 91 l~~~~~~---l~~~~vrl~~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YggR~EIv~A~r~i~~~v~~----- 162 (245)
T 2d2r_A 91 LKDERST---YLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPS----- 162 (245)
T ss_dssp HHHHHHH---HHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCCT-----
T ss_pred HHHHHHH---HHHcCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHh-----
Confidence 9887653 67799999999999999999999999999999999999999999999999999999999987532
Q ss_pred CCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHH
Q 038167 190 FKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLR 269 (292)
Q Consensus 190 ~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~ 269 (292)
.++|++||++.|+++|++.++||||||||||||+|||||||||++||||||++++||||++.
T Consensus 163 ------------------~l~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~ 224 (245)
T 2d2r_A 163 ------------------NISLLESLENEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPK 224 (245)
T ss_dssp ------------------TGGGCSCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHH
T ss_pred ------------------cCChhhCCHHHHHHHhccCCCCCCcEEEEcCCCccccCCcchhhcceEEEECCCCCCcCCHH
Confidence 15788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 038167 270 HLIWAILNFQRHHAYLEKKK 289 (292)
Q Consensus 270 df~~al~~yq~r~~r~gk~~ 289 (292)
||++||.+||+|++|||+.+
T Consensus 225 ~~~~Al~~y~~R~RRfG~~~ 244 (245)
T 2d2r_A 225 DLENIISDFYKRVRKFGELK 244 (245)
T ss_dssp HHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhcCccCCCCC
Confidence 99999999999999999864
No 5
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=100.00 E-value=3.6e-85 Score=596.69 Aligned_cols=236 Identities=31% Similarity=0.539 Sum_probs=206.7
Q ss_pred hcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHH
Q 038167 27 ILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLM 106 (292)
Q Consensus 27 ~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~ 106 (292)
.+..+++|+|||||||||||||+++|++ ...||..|++++.+++.||.++||++|||||||||||+||++||++||+++
T Consensus 14 ~~~~~~iP~HVAiImDGN~RwA~~~gl~-~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~ 92 (249)
T 1f75_A 14 NINAAQIPKHIAIIMDGNGRWAKQKKMP-RIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLP 92 (249)
T ss_dssp CCCSTTSCSEEEEEECCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHH
T ss_pred ccccCCCCCEEEEEecCCcHHHHHCCCC-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHH
Confidence 4556889999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccC
Q 038167 107 LEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQ 186 (292)
Q Consensus 107 ~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~ 186 (292)
.+++.+.+.+ ++++||+|+++||++.||+++++.++++++.|++|++++||||++||||+||++|++++++++..+.
T Consensus 93 ~~~l~~~~~~---l~~~~vr~~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eIv~A~r~l~~~v~~g~ 169 (249)
T 1f75_A 93 GDFLNTFLPE---LIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGE 169 (249)
T ss_dssp HHHHHHHHHH---HHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHH---HHHcCeEEEEeCChhhCCHHHHHHHHHHHHhhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999887653 6678999999999999999999999999999999999999999999999999999999999876421
Q ss_pred CCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCC
Q 038167 187 PQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEI 266 (292)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf 266 (292)
++|++||++.|+++|++.++||||||||||||+|||||||||++||||||++++||||
T Consensus 170 ----------------------l~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF 227 (249)
T 1f75_A 170 ----------------------ISLDEISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDF 227 (249)
T ss_dssp ----------------------SCGGGCSHHHHGGGSTTTTSCCCSEEEECTTCCBCCSCSTTTTTTCEEEECCSCGGGC
T ss_pred ----------------------CChHhCCHHHHHHhhccCCCCCCcEEEEcCCCccccCCchhhhhceEEEECCCCCCcC
Confidence 5788999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhhh
Q 038167 267 GLRHLIWAILNFQRHHAYLEKK 288 (292)
Q Consensus 267 ~~~df~~al~~yq~r~~r~gk~ 288 (292)
++.||++||.+||+|++|||+.
T Consensus 228 ~~~~~~~Al~~y~~r~RRfG~~ 249 (249)
T 1f75_A 228 NEESLAQCISIYQNRHRRFGGL 249 (249)
T ss_dssp CHHHHHHHHHHHTTC-------
T ss_pred CHHHHHHHHHHHhcCccCCCCC
Confidence 9999999999999999999973
No 6
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=100.00 E-value=8.5e-85 Score=594.85 Aligned_cols=240 Identities=27% Similarity=0.443 Sum_probs=198.6
Q ss_pred HhhcCCCCCC----CEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHH
Q 038167 25 FGILSVGVIP----NHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIR 100 (292)
Q Consensus 25 ~~~l~~~~iP----~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~ 100 (292)
...++.+++| +|||||||||||||+++|++ ...||..|++++.+++.||.++||++|||||||||||+||++||+
T Consensus 5 ~~~l~~~~iP~~~~~HVAiImDGN~RwAk~~gl~-r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~ 83 (253)
T 3qas_B 5 ATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVS 83 (253)
T ss_dssp --------CCTTCCSEEEEECCCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC-----------
T ss_pred ccccccCCCCCCCCCEEEEEecCCHHHHHHcCCC-hhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHH
Confidence 3456678899 99999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHH
Q 038167 101 YLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCL 180 (292)
Q Consensus 101 ~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~ 180 (292)
+||+++.+++.+.+.+ ++++||+|+++||++.||+++++.++++++.|++|++++||||++||||+||++|++++++
T Consensus 84 ~Lm~l~~~~l~~~~~~---l~~~~vrlr~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YgGR~EIv~A~r~l~~ 160 (253)
T 3qas_B 84 ALMELFVWALDSEVKS---LHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAE 160 (253)
T ss_dssp ------CTHHHHHHHH---HHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHCCeEEEEeCChHhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999999999886653 6778999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecC
Q 038167 181 VTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPA 260 (292)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~ 260 (292)
++..++ ++|++||++.|+++|++.++||||||||||||+|||||||||++||||||++
T Consensus 161 ~v~~g~----------------------l~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~ 218 (253)
T 3qas_B 161 KVQQGN----------------------LQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTD 218 (253)
T ss_dssp HHHTTS----------------------CCGGGCCHHHHHTTSTTTTSCCCCEEEECSSCCCCTTSCSGGGTTCEEEECC
T ss_pred HHHcCC----------------------CChHHCCHHHHHHhhccCCCCCCcEEEEcCCCccccCCchhhhcCEEEEECC
Confidence 876421 5788999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhhhhhhc
Q 038167 261 ALWPEIGLRHLIWAILNFQRHHAYLEKKKK 290 (292)
Q Consensus 261 ~~WPdf~~~df~~al~~yq~r~~r~gk~~~ 290 (292)
++||||++.||++||.+||+|++|||+...
T Consensus 219 ~lWPdF~~~~~~~Al~~y~~R~RRfG~~~~ 248 (253)
T 3qas_B 219 VLWPDFDEQDFEGALNAFANRERRFGGTEP 248 (253)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHC--------
T ss_pred CCCCcCCHHHHHHHHHHHhcCCcCCCCCCC
Confidence 999999999999999999999999998654
No 7
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=100.00 E-value=4.9e-84 Score=597.27 Aligned_cols=237 Identities=28% Similarity=0.466 Sum_probs=225.0
Q ss_pred HhhcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 25 FGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 25 ~~~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
...+..+++|+|||||||||||||+++|++ ...||..|++++.+++.||.++||++|||||||||||+||++||++||+
T Consensus 47 ~~~~~~~~iP~HVAIIMDGN~RwAk~rgl~-r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm~ 125 (284)
T 2vg3_A 47 APRIPADRLPNHVAIVMDGNGRWATQRGLA-RTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMG 125 (284)
T ss_dssp CCCCCTTTSCSEEEEECCCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHH
T ss_pred hhhcccCCCCCEEEEEecCChHHHHHcCCc-hhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHH
Confidence 345566789999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhc
Q 038167 105 LMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKK 184 (292)
Q Consensus 105 l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~ 184 (292)
++.+++.+.+. .++++||+|+++|+++.||+++++.++++++.|++|++++||||++||||+||++|++++++++..
T Consensus 126 L~~~~l~~~~~---~l~~~~vrvrviG~~~~lp~~~~~~i~~ae~~T~~n~~l~Lnia~~YgGR~EIv~A~r~la~~v~~ 202 (284)
T 2vg3_A 126 FNRDVVRRRRD---TLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAA 202 (284)
T ss_dssp HHHHHHHHHHH---HHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH---HHHHcCeEEEEeCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHc
Confidence 99999987654 367889999999999999999999999999999999999999999999999999999999998764
Q ss_pred cCCCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCC
Q 038167 185 TQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWP 264 (292)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WP 264 (292)
++ +++++||++.|+++|++.++||||||||||||+|||||||||++||||||++++||
T Consensus 203 g~----------------------l~~~dI~e~~i~~~L~t~~~PdPDLlIRTsGE~RLSnFLlWQ~aYsElyF~d~lWP 260 (284)
T 2vg3_A 203 GR----------------------LNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWP 260 (284)
T ss_dssp TS----------------------SCGGGCCHHHHHHHSSSTTCCCCSEEEECTTCCCCTTTTTTTTTTCEEEECCSCGG
T ss_pred CC----------------------CChHHCCHHHHHHHhccCCCCCCcEEEeCCCCccccCCCchhhcceEEEECCCCCC
Confidence 21 57889999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhh
Q 038167 265 EIGLRHLIWAILNFQRHHAYLEK 287 (292)
Q Consensus 265 df~~~df~~al~~yq~r~~r~gk 287 (292)
||++.||++||.+||+|++|||+
T Consensus 261 dF~~~df~~Al~~Yq~R~RRfG~ 283 (284)
T 2vg3_A 261 DYDRRDLWAACEEYASRTRRFGS 283 (284)
T ss_dssp GCCHHHHHHHHHHHHHSCCCSSC
T ss_pred cCCHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999997
No 8
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=100.00 E-value=7.1e-82 Score=568.68 Aligned_cols=222 Identities=26% Similarity=0.499 Sum_probs=212.2
Q ss_pred CCCCEEEEEecCCchHHHhcC-CCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHH
Q 038167 32 VIPNHIAFILDGNRRFAKKHN-LAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKM 110 (292)
Q Consensus 32 ~iP~HIaiImDGNRR~A~~~g-l~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l 110 (292)
++|+|||||||||||||+++| ++ ...||..|++++.+++.||.++||++|||||||||||+||++||++||+++.+++
T Consensus 1 ~iP~HvAiImDGN~RwA~~~g~l~-~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l 79 (227)
T 2vg0_A 1 DLPRHIAVLCDGNRRWARSAGYDD-VSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVV 79 (227)
T ss_dssp CCCSEEEEECCCHHHHHHHTTCSC-THHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCChHHHHHcCCCc-hhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999 99 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCC
Q 038167 111 EFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAF 190 (292)
Q Consensus 111 ~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~ 190 (292)
.+.+.+ +++|+++++|+++.||+++++.++++++.|++|++++||||++||||+||++|++++++++..++
T Consensus 80 ~~~~~~-----~~~vrv~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eI~~A~r~l~~~v~~g~---- 150 (227)
T 2vg0_A 80 EEICAP-----ANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANG---- 150 (227)
T ss_dssp HHHTCT-----TTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHhcc-----ccCeEEEecCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCC----
Confidence 886642 68999999999999999999999999999999999999999999999999999999999876421
Q ss_pred CCCCCCCCCccchhhhcccCcCC----CCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCC
Q 038167 191 KPRNPQNDVTEDADEHKNKEQNT----IKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEI 266 (292)
Q Consensus 191 ~~~~~~~~~~~~~~e~~~~~~~~----It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf 266 (292)
++|++ ||++.|+++|++.++||||||||||||+|||||||||++||||||++++||||
T Consensus 151 ------------------l~~~~~~~~I~e~~i~~~L~t~~~pdpDLlIRTsGe~RLSnFLlWQ~aysElyf~~~lWPdF 212 (227)
T 2vg0_A 151 ------------------ATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAF 212 (227)
T ss_dssp ------------------CCHHHHHHHCCHHHHHHHSTTTTSCCCSEEEECTTCCCCTTTTTTTTTTCEEEECSSCGGGC
T ss_pred ------------------CChhHhhccCCHHHHHHhhccCCCCCCcEEEEcCCCccccCcchHHHcCeEEEECCCCCCCC
Confidence 46778 99999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 038167 267 GLRHLIWAILNFQRH 281 (292)
Q Consensus 267 ~~~df~~al~~yq~r 281 (292)
++.||++||.+||+|
T Consensus 213 ~~~~~~~Al~~y~~R 227 (227)
T 2vg0_A 213 RHVDFLRALRDYSAR 227 (227)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999975
No 9
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=65.88 E-value=26 Score=30.07 Aligned_cols=66 Identities=8% Similarity=0.039 Sum_probs=40.4
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecC
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGN 132 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd 132 (292)
.....+.+.+.++.|.++|++.|.++......-..+.+..+. +.+.+++++.. ..++|+++-+--.
T Consensus 79 ~~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~----~~~~l~~l~~~---a~~~Gv~l~lE~~ 144 (286)
T 3dx5_A 79 FEKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQE----YVNRIRMICEL---FAQHNMYVLLETH 144 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHH----HHHHHHHHHHH---HHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHH----HHHHHHHHHHH---HHHhCCEEEEecC
Confidence 355678899999999999999999975432211123333333 34444444432 3357888766543
No 10
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=61.28 E-value=90 Score=27.84 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=59.3
Q ss_pred HHHHHHHhCCCCeEEEEeeccC-----CCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEE-----EecCC--CCC
Q 038167 69 SLLKYCAELSVKYVSIYAFSID-----NFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVC-----FIGNL--GLV 136 (292)
Q Consensus 69 ~ii~wc~~~GI~~vSvYafS~e-----N~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~-----~iGd~--~~l 136 (292)
+-++.+.+.|++.|.+|.-+.+ |++++.+|.-..+..+.++.. +.|+.++ +.|-. +..
T Consensus 87 ~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~----------~~G~~V~~~l~~~~~~e~~~~~ 156 (302)
T 2ftp_A 87 KGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAAR----------QHQVRVRGYISCVLGCPYDGDV 156 (302)
T ss_dssp HHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHH----------HTTCEEEEEEECTTCBTTTBCC
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH----------HCCCeEEEEEEEEeeCCcCCCC
Confidence 3466788899999999876544 788999887666555544432 3566665 12311 223
Q ss_pred -CHHHHHHHHHHHHHcCCCCeEEEEEEe--cCCCHHHHHHHHHHHHHH
Q 038167 137 -SEPIRVTAEKVMRATSKNTRIVILICL--AYSSTEEIVHTVEETCLV 181 (292)
Q Consensus 137 -p~~~~~~i~~~e~~T~~~~~~~lni~~--~Y~Gr~EIv~a~~~l~~~ 181 (292)
|+.+.+.++.+.+...+ .|+++- ++.-=.++.+.++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~G~d----~i~l~DT~G~~~P~~~~~lv~~l~~~ 200 (302)
T 2ftp_A 157 DPRQVAWVARELQQMGCY----EVSLGDTIGVGTAGATRRLIEAVASE 200 (302)
T ss_dssp CHHHHHHHHHHHHHTTCS----EEEEEESSSCCCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCC----EEEEeCCCCCcCHHHHHHHHHHHHHh
Confidence 45566666655555332 677774 444444555555555443
No 11
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=58.10 E-value=95 Score=27.96 Aligned_cols=98 Identities=10% Similarity=0.094 Sum_probs=60.6
Q ss_pred HHHHHhCCCCeEEEEeecc-----CCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEE-----ecCC--CCC-C
Q 038167 71 LKYCAELSVKYVSIYAFSI-----DNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCF-----IGNL--GLV-S 137 (292)
Q Consensus 71 i~wc~~~GI~~vSvYafS~-----eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~-----iGd~--~~l-p 137 (292)
++.+.+.|++.|.+|.-.. .|++++.+|+-..+....++.. +.|..+++ +|-. ... |
T Consensus 87 i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak----------~~G~~v~~~i~~~~~~~~~~~~~~ 156 (307)
T 1ydo_A 87 LENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQ----------KANLTTRAYLSTVFGCPYEKDVPI 156 (307)
T ss_dssp HHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHH----------HTTCEEEEEEECTTCBTTTBCCCH
T ss_pred HHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHH----------HCCCEEEEEEEEEecCCcCCCCCH
Confidence 5556678999999996443 5899999887555544444432 34566552 2211 123 4
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEE--ecCCCHHHHHHHHHHHHHHh
Q 038167 138 EPIRVTAEKVMRATSKNTRIVILIC--LAYSSTEEIVHTVEETCLVT 182 (292)
Q Consensus 138 ~~~~~~i~~~e~~T~~~~~~~lni~--~~Y~Gr~EIv~a~~~l~~~~ 182 (292)
+.+.+.++.+.+...+ .|+|+ +++.-=.++.+.++.+.+.+
T Consensus 157 ~~~~~~~~~~~~~Ga~----~i~l~DT~G~~~P~~v~~lv~~l~~~~ 199 (307)
T 1ydo_A 157 EQVIRLSEALFEFGIS----ELSLGDTIGAANPAQVETVLEALLARF 199 (307)
T ss_dssp HHHHHHHHHHHHHTCS----CEEEECSSCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCC----EEEEcCCCCCcCHHHHHHHHHHHHHhC
Confidence 6666677767766443 57777 45556667777777775543
No 12
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=55.83 E-value=1.1e+02 Score=27.41 Aligned_cols=105 Identities=9% Similarity=0.046 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+.+..-+.|...-+.+|-..+++...+.. ...+.| ++|--+.=..+..+
T Consensus 33 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~-----------~gr~pv-iaGvg~~~t~~ai~ 100 (307)
T 3s5o_A 33 DYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAM-----------PKNRLL-LAGSGCESTQATVE 100 (307)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTS-----------CTTSEE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHc-----------CCCCcE-EEecCCCCHHHHHH
Confidence 457899999999999999999999888999999999998887765432 122333 44543322333444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCC----CHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAYS----STEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y~----Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. .....+-+.-.|- +.++|++-.+.+++.+
T Consensus 101 la~~A~~~---Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~ 141 (307)
T 3s5o_A 101 MTVSMAQV---GADAAMVVTPCYYRGRMSSAALIHHYTKVADLS 141 (307)
T ss_dssp HHHHHHHT---TCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc---CCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhc
Confidence 44444443 3455555555563 7889999999998874
No 13
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=52.86 E-value=1.3e+02 Score=26.95 Aligned_cols=106 Identities=11% Similarity=0.070 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..+
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~-----------grvpV-iaGvg~~~t~~ai~ 97 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAK-----------GKIKL-IAHVGCVSTAESQQ 97 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TTSEE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCCCHHHHHH
Confidence 4588899999999999999999988888889999999999887765532 12333 33543322244444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHhh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVTK 183 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~~ 183 (292)
.++.+++.. ....+-+.-.| -+.++|++-.+.+++.+.
T Consensus 98 la~~A~~~G---adavlv~~P~y~~~s~~~l~~~f~~va~a~~ 137 (303)
T 2wkj_A 98 LAASAKRYG---FDAVSAVTPFYYPFSFEEHCDHYRAIIDSAD 137 (303)
T ss_dssp HHHHHHHHT---CSEEEEECCCSSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC---CCEEEecCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 555555543 34455554445 378999999999988753
No 14
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=52.20 E-value=53 Score=30.15 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=58.0
Q ss_pred HhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCC---CCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCC-C--
Q 038167 61 RAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFK---RTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNL-G-- 134 (292)
Q Consensus 61 ~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~---R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~-~-- 134 (292)
..-+..+.++++||.+-||+ +|-+|.+=|- -+.-.. ...+.+.+.|.++. .+..++|+|+.+--+. .
T Consensus 56 ~~Nl~~l~~il~~n~~~~I~---~yRiSS~l~P~~thp~~~~-~~~~~~~~~l~~iG---~~a~~~~iRLS~HPgqF~vL 128 (310)
T 3tc3_A 56 SSNLLCLKNILEWNLKHEIL---FFRISSNTIPLASHPKFHV-NWKDKLSHILGDIG---DFIKENSIRISMHPGQYVVL 128 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---EEECCTTSSTTTTSTTCCC-CHHHHTHHHHHHHH---HHHHHTTCEEEECCCTTCCT
T ss_pred HHHHHHHHHHHHHHHHcCCE---EEEeCcccCCCcccccccc-chHHHHHHHHHHHH---HHHHHcCcEEEecCCCCccC
Confidence 34577899999999999996 6776654321 110000 11122333333322 2345789999887653 2
Q ss_pred --CCCHHHHHHHHHHHHHcC-----C-CCeEEEEEEecCCCHHHH
Q 038167 135 --LVSEPIRVTAEKVMRATS-----K-NTRIVILICLAYSSTEEI 171 (292)
Q Consensus 135 --~lp~~~~~~i~~~e~~T~-----~-~~~~~lni~~~Y~Gr~EI 171 (292)
.=|+-+.+++++++-... + ...+++.+...||+|++-
T Consensus 129 ~S~~~~Vv~~SI~dL~yHa~~ld~mG~~~~i~IH~Gg~yGdK~~a 173 (310)
T 3tc3_A 129 NSVREEVVRSSIMELKYHADLLDSMGIEGKIQIHVGSSMNGKEES 173 (310)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCcCceeecCCcCCCHHHH
Confidence 223444556666543211 1 235666677779999753
No 15
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=51.76 E-value=1.2e+02 Score=26.47 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEeeccC-----CC-CCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec
Q 038167 62 AGFLTLMSLLKYCAELSVKYVSIYAFSID-----NF-KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG 131 (292)
Q Consensus 62 ~G~~~l~~ii~wc~~~GI~~vSvYafS~e-----N~-~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG 131 (292)
...+.+.+.++.|.++|++.|.+...+.. .| .++......-++.+.+.+++++.. ..++|+++-+--
T Consensus 108 ~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---a~~~Gv~l~lEn 180 (340)
T 2zds_A 108 RAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDV---FDAEGVRFAHEV 180 (340)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHH---HHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHH---HHHcCCEEEEEc
Confidence 34677899999999999999998643321 11 133332334445555666665542 345688876644
No 16
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=50.17 E-value=1.4e+02 Score=26.52 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+.+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..+
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------gr~pv-iaGvg~~~t~~ai~ 86 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTAN-----------GRVPV-IAGAGSNSTAEAIA 86 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSCB-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCccHHHHHH
Confidence 3578899999999999999999888888889999999999887766532 11222 33433222244444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCC--CHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAYS--STEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y~--Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. .....+-+.-.|. +.++|++-.+.+++.+
T Consensus 87 la~~A~~~---Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~ 125 (292)
T 2vc6_A 87 FVRHAQNA---GADGVLIVSPYYNKPTQEGIYQHFKAIDAAS 125 (292)
T ss_dssp HHHHHHHT---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 44444443 3344555554453 8899999999998764
No 17
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=48.82 E-value=1.6e+02 Score=26.92 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..+
T Consensus 50 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~-----------grvpV-iaGvg~~st~eai~ 117 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVD-----------RRVPV-LIGTGGTNARETIE 117 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCCCHHHHHH
Confidence 4588999999999999999999988888889999999999887766532 12333 34543322344445
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++.. ....+-+.-.| -+.++|++-.+.+++.+
T Consensus 118 la~~A~~~G---adavlv~~P~Y~~~s~~~l~~~f~~VA~a~ 156 (343)
T 2v9d_A 118 LSQHAQQAG---ADGIVVINPYYWKVSEANLIRYFEQVADSV 156 (343)
T ss_dssp HHHHHHHHT---CSEEEEECCSSSCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcC---CCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 555555543 34455554445 37899999999998764
No 18
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=48.68 E-value=1.3e+02 Score=26.68 Aligned_cols=105 Identities=11% Similarity=0.123 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+.+..-+.|...-+.+|-..+++...+... ..+.| ++|-.+.=..+..+
T Consensus 22 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------gr~pv-iaGvg~~~t~~ai~ 89 (294)
T 3b4u_A 22 DIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGI-----------APSRI-VTGVLVDSIEDAAD 89 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTC-----------CGGGE-EEEECCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCccHHHHHH
Confidence 4688999999999999999999988888889999999988887654421 11222 33432222234444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC---CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY---SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y---~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. .....+-+.-.| -+.++|++-.+.+++.+
T Consensus 90 la~~A~~~---Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~ 129 (294)
T 3b4u_A 90 QSAEALNA---GARNILLAPPSYFKNVSDDGLFAWFSAVFSKI 129 (294)
T ss_dssp HHHHHHHT---TCSEEEECCCCSSCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---CCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc
Confidence 44444443 334444443334 36799999999998875
No 19
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=47.34 E-value=1.6e+02 Score=26.50 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=.++..+
T Consensus 43 D~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~-----------grvpV-iaGvg~~~t~~ai~ 110 (315)
T 3na8_A 43 DLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVA-----------HRVPT-IVSVSDLTTAKTVR 110 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSCB-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCCCHHHHHH
Confidence 4688999999999999999999988889899999999999887766532 12332 33433222244444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. ..+..+-+.-.| -+.++|++-.+.+++.+
T Consensus 111 la~~A~~~---Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 149 (315)
T 3na8_A 111 RAQFAESL---GAEAVMVLPISYWKLNEAEVFQHYRAVGEAI 149 (315)
T ss_dssp HHHHHHHT---TCSEEEECCCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 44444443 334444444334 36789999999998874
No 20
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=46.58 E-value=1.6e+02 Score=26.23 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|-.+.=..+..+
T Consensus 19 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai~ 86 (297)
T 2rfg_A 19 DEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQ-----------GRVPV-IAGAGSNNPVEAVR 86 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSCB-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhC-----------CCCeE-EEccCCCCHHHHHH
Confidence 3578899999999999999999888888889999999999888766532 11222 34433222244444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++.. .+..+-+.-.| -+.++|++-.+.+++.+
T Consensus 87 la~~A~~~G---adavlv~~P~y~~~s~~~l~~~f~~va~a~ 125 (297)
T 2rfg_A 87 YAQHAQQAG---ADAVLCVAGYYNRPSQEGLYQHFKMVHDAI 125 (297)
T ss_dssp HHHHHHHHT---CSEEEECCCTTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC---CCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 455555543 34445444445 37899999999998764
No 21
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=46.36 E-value=1.7e+02 Score=26.42 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+.+..-+.|...-+.+|-..+++...+... ..+.| +.|--+.=..+..+
T Consensus 30 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai~ 97 (318)
T 3qfe_A 30 DLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVG-----------PDFPI-MAGVGAHSTRQVLE 97 (318)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHC-----------TTSCE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCCCHHHHHH
Confidence 4688999999999999999999998889899999999999887766531 12333 34544333344555
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC----CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY----SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y----~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... +..+-+.-.| .+.++|++-.+.+++.+
T Consensus 98 la~~a~~~Ga---davlv~~P~y~~kp~~~~~l~~~f~~ia~a~ 138 (318)
T 3qfe_A 98 HINDASVAGA---NYVLVLPPAYFGKATTPPVIKSFFDDVSCQS 138 (318)
T ss_dssp HHHHHHHHTC---SEEEECCCCC---CCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCC---CEEEEeCCcccCCCCCHHHHHHHHHHHHhhC
Confidence 5555555433 3444444435 35789999999998874
No 22
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=46.09 E-value=1.7e+02 Score=26.30 Aligned_cols=105 Identities=11% Similarity=0.089 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+-.-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..+
T Consensus 27 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai~ 94 (309)
T 3fkr_A 27 DLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVA-----------GRVPV-IVTTSHYSTQVCAA 94 (309)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCchHHHHHH
Confidence 4588999999999999999999988888889999999999887765531 12333 33433322344444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC-----CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY-----SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y-----~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. .....+-+.-.| -+.++|++--+.+++.+
T Consensus 95 la~~A~~~---Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~ 136 (309)
T 3fkr_A 95 RSLRAQQL---GAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAI 136 (309)
T ss_dssp HHHHHHHT---TCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc---CCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhc
Confidence 44444443 334444444334 26899999999998874
No 23
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=45.66 E-value=1.2e+02 Score=26.17 Aligned_cols=66 Identities=14% Similarity=0.032 Sum_probs=39.0
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCC-C--CC-CHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDN-F--KR-TQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG 131 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN-~--~R-~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG 131 (292)
.....+.+.+.++.|.++|++.|.+..++... + .. +.+ .-++.+.+.+++++.. ..++|+++-+--
T Consensus 102 r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~---~~~~~~~~~l~~l~~~---a~~~gv~l~lEn 171 (309)
T 2hk0_A 102 RAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKA---GDYARGVEGINGIADF---ANDLGINLCIEV 171 (309)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHH---HHHHHHHHHHHHHHHH---HHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChH---HHHHHHHHHHHHHHHH---HHHcCCEEEEee
Confidence 45677899999999999999999865322111 1 11 222 2234444455554432 345788875543
No 24
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=45.53 E-value=1.7e+02 Score=26.20 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..+
T Consensus 34 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai~ 101 (304)
T 3l21_A 34 DTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVG-----------DRARV-IAGAGTYDTAHSIR 101 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TTSEE-EEECCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC-----------CCCeE-EEeCCCCCHHHHHH
Confidence 4688999999999999999999988888889999999999887766532 12444 44543333355555
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... +..+-+.-.| -+.+++++-.+.+++.+
T Consensus 102 la~~a~~~Ga---davlv~~P~y~~~s~~~l~~~f~~va~a~ 140 (304)
T 3l21_A 102 LAKACAAEGA---HGLLVVTPYYSKPPQRGLQAHFTAVADAT 140 (304)
T ss_dssp HHHHHHHHTC---SEEEEECCCSSCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCC---CEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 5666666533 3344443333 35789999888888764
No 25
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=44.31 E-value=1.7e+02 Score=25.87 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..+
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------gr~pv-iaGvg~~~t~~ai~ 86 (289)
T 2yxg_A 19 DFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVN-----------GRVQV-IAGAGSNCTEEAIE 86 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSEE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCCCHHHHHH
Confidence 3578899999999999999999988888889999999999887765531 12333 34543322344445
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++.. .+..+-+.-.| -+.++|.+-.+.+++.+
T Consensus 87 la~~a~~~G---adavlv~~P~y~~~s~~~l~~~f~~ia~a~ 125 (289)
T 2yxg_A 87 LSVFAEDVG---ADAVLSITPYYNKPTQEGLRKHFGKVAESI 125 (289)
T ss_dssp HHHHHHHHT---CSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC---CCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 555555543 34455554445 47899999999998764
No 26
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=44.27 E-value=1.8e+02 Score=26.20 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|-.+.=..+..+
T Consensus 41 D~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~-----------grvpV-iaGvg~~st~~ai~ 108 (315)
T 3si9_A 41 DEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVA-----------KRVPV-VAGAGSNSTSEAVE 108 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSCB-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCCCHHHHHH
Confidence 4688999999999999999999888888888999999999888766542 12333 33433322344444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. ..+..+-+.-.| -+.++|++-.+.+++.+
T Consensus 109 la~~A~~~---Gadavlv~~P~y~~~~~~~l~~~f~~va~a~ 147 (315)
T 3si9_A 109 LAKHAEKA---GADAVLVVTPYYNRPNQRGLYTHFSSIAKAI 147 (315)
T ss_dssp HHHHHHHT---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44444443 334444444444 46889999999998874
No 27
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=44.15 E-value=48 Score=26.67 Aligned_cols=35 Identities=23% Similarity=0.080 Sum_probs=29.1
Q ss_pred cchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCC
Q 038167 56 EGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDN 91 (292)
Q Consensus 56 ~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN 91 (292)
...|.-.|-+.+..++.|+.+.|++.|.+.... +|
T Consensus 130 ~~~g~Gig~~ll~~l~~~a~~~g~~~i~l~v~~-~N 164 (209)
T 3pzj_A 130 ALRRTRLATEAVFLLLKTAFELGYRRCEWRCDS-RN 164 (209)
T ss_dssp TTTTSHHHHHHHHHHHHHHHHTTCSEEEEEEET-TC
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCcEEEEeecC-CC
Confidence 455666688889999999999999999999865 45
No 28
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=43.59 E-value=1.8e+02 Score=25.89 Aligned_cols=105 Identities=12% Similarity=0.117 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..+
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai~ 93 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVA-----------KRVPV-IAGTGANNTVEAIA 93 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCcCHHHHHH
Confidence 4588899999999999999999988888889999999999887766542 12333 33543322344444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. .....+-+.-.| -+.+++++-.+.+++.+
T Consensus 94 la~~a~~~---Gadavlv~~P~y~~~~~~~l~~~f~~va~a~ 132 (297)
T 3flu_A 94 LSQAAEKA---GADYTLSVVPYYNKPSQEGIYQHFKTIAEAT 132 (297)
T ss_dssp HHHHHHHT---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 44444443 334444444444 46889999999998874
No 29
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=43.36 E-value=1.8e+02 Score=25.82 Aligned_cols=105 Identities=8% Similarity=0.130 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+.+..-+.|...-+.+|-..+++...+... ..+.| ++|-.+.=..+..+
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai~ 86 (294)
T 2ehh_A 19 DYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAA-----------GRIKV-IAGTGGNATHEAVH 86 (294)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSEE-EEECCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCCCHHHHHH
Confidence 3578899999999999999999888888889999999999887765531 12333 34543322244444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. ..+..+-+.-.| -+.++|++-.+.+++.+
T Consensus 87 la~~A~~~---Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 125 (294)
T 2ehh_A 87 LTAHAKEV---GADGALVVVPYYNKPTQRGLYEHFKTVAQEV 125 (294)
T ss_dssp HHHHHHHT---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 44444443 334555555445 47899999999998764
No 30
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=43.18 E-value=1.8e+02 Score=25.79 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHh-CCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHH
Q 038167 63 GFLTLMSLLKYCAE-LSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIR 141 (292)
Q Consensus 63 G~~~l~~ii~wc~~-~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~ 141 (292)
-++.+.++++|..+ .||.-+-+..-+.|...-+.+|-..+++...+... ..+.| +.|-.+.=..+..
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai 89 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-----------DQIAL-IAQVGSVNLKEAV 89 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSEE-EEECCCSCHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhC-----------CCCeE-EEecCCCCHHHHH
Confidence 45888999999999 99999999988889899999999999887765531 12333 3454332234445
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 142 VTAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 142 ~~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
+.++.+++.. .+..+-+.-.| -+.++|++-.+.+++.+
T Consensus 90 ~la~~a~~~G---adavlv~~P~y~~~~~~~l~~~f~~va~a~ 129 (293)
T 1f6k_A 90 ELGKYATELG---YDCLSAVTPFYYKFSFPEIKHYYDTIIAET 129 (293)
T ss_dssp HHHHHHHHHT---CSEEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 5555555543 34445454445 47899999999998874
No 31
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=42.87 E-value=20 Score=24.14 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 038167 94 RTQNEIRYLMDLMLEKMEFL 113 (292)
Q Consensus 94 R~~~Ev~~Lm~l~~~~l~~l 113 (292)
++.+||..+|+++.+-++.+
T Consensus 32 ktdqEV~~~Memf~EDi~sl 51 (53)
T 1r4g_A 32 KTDQEVKAVMELVEEDIESL 51 (53)
T ss_dssp CSSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHh
Confidence 56699999999998877644
No 32
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=41.61 E-value=1.9e+02 Score=25.71 Aligned_cols=106 Identities=12% Similarity=0.064 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+-.-+.|...-+.+|-..+++...+.... ..+.| ++|--+.=..+..+
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g----------~rvpv-iaGvg~~~t~~ai~ 94 (301)
T 3m5v_A 26 DEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKG----------TKVKV-LAGAGSNATHEAVG 94 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT----------SSCEE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC----------CCCeE-EEeCCCCCHHHHHH
Confidence 45888999999999999999998888888899999999998877665321 02444 44543322344444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. ..+..+-+.-.| -+.++|++-.+.+++.+
T Consensus 95 la~~a~~~---Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 133 (301)
T 3m5v_A 95 LAKFAKEH---GADGILSVAPYYNKPTQQGLYEHYKAIAQSV 133 (301)
T ss_dssp HHHHHHHT---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 44444443 334455554444 36789999999998874
No 33
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=40.47 E-value=2e+02 Score=25.66 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|-.+.=..+..+
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~-----------grvpV-iaGvg~~st~~ai~ 98 (306)
T 1o5k_A 31 DLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVD-----------GKIPV-IVGAGTNSTEKTLK 98 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC-----------CCCeE-EEcCCCccHHHHHH
Confidence 3578899999999999999999988889899999999999888766532 12332 34543322344445
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++.. ....+-+.-.| -+.++|++-.+.+++.+
T Consensus 99 la~~A~~~G---adavlv~~P~y~~~s~~~l~~~f~~va~a~ 137 (306)
T 1o5k_A 99 LVKQAEKLG---ANGVLVVTPYYNKPTQEGLYQHYKYISERT 137 (306)
T ss_dssp HHHHHHHHT---CSEEEEECCCSSCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcC---CCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 555555543 33444444444 37889999998888653
No 34
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=40.29 E-value=1.8e+02 Score=26.12 Aligned_cols=104 Identities=8% Similarity=-0.010 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+-.-+.|...-+.+|-..+++...+... ..+.| ++|--+ =..+..+
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~-----------grvpV-iaGvg~-st~~ai~ 97 (314)
T 3d0c_A 31 DWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVN-----------GRATV-VAGIGY-SVDTAIE 97 (314)
T ss_dssp CHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSEE-EEEECS-SHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhC-----------CCCeE-EecCCc-CHHHHHH
Confidence 4588999999999999999888877778888999999999887765532 12333 334333 2234444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. ..+..+-+.-.| -+.++|++-.+.+++.+
T Consensus 98 la~~A~~~---Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 136 (314)
T 3d0c_A 98 LGKSAIDS---GADCVMIHQPVHPYITDAGAVEYYRNIIEAL 136 (314)
T ss_dssp HHHHHHHT---TCSEEEECCCCCSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 44444443 334444444445 47899999999998764
No 35
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=40.06 E-value=2e+02 Score=25.47 Aligned_cols=106 Identities=12% Similarity=0.148 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHH
Q 038167 62 AGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIR 141 (292)
Q Consensus 62 ~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~ 141 (292)
.-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|-.+.=..+..
T Consensus 20 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai 87 (292)
T 3daq_A 20 VNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVD-----------KRVPV-IAGTGTNDTEKSI 87 (292)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCSCHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCcccHHHHH
Confidence 34578899999999999999999988889889999999999887766531 12333 3454332234445
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 142 VTAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 142 ~~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
+.++.+++.. .+..+-+.-.| -+.++|++-.+.+++.+
T Consensus 88 ~la~~a~~~G---adavlv~~P~y~~~~~~~l~~~f~~ia~a~ 127 (292)
T 3daq_A 88 QASIQAKALG---ADAIMLITPYYNKTNQRGLVKHFEAIADAV 127 (292)
T ss_dssp HHHHHHHHHT---CSEEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 5555555543 23444443333 46789999999998874
No 36
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=39.55 E-value=2.1e+02 Score=25.54 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..+
T Consensus 35 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~st~~ai~ 102 (304)
T 3cpr_A 35 DIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVG-----------DRAKL-IAGVGTNNTRTSVE 102 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHT-----------TTSEE-EEECCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EecCCCCCHHHHHH
Confidence 4588999999999999999999988889999999999999887765531 12333 34543322244444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. ..+..+-+.-.| -+.++|.+-.+.+++.+
T Consensus 103 la~~A~~~---Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~ 141 (304)
T 3cpr_A 103 LAEAAASA---GADGLLVVTPYYSKPSQEGLLAHFGAIAAAT 141 (304)
T ss_dssp HHHHHHHT---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 44444443 334455554445 37899999999998764
No 37
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=39.37 E-value=92 Score=29.19 Aligned_cols=115 Identities=11% Similarity=0.144 Sum_probs=66.6
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeecc-CCCCC---------------------------------C-------HH-
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSI-DNFKR---------------------------------T-------QN- 97 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~-eN~~R---------------------------------~-------~~- 97 (292)
....++.+.+.++.+.++||+.|. |.|+. -.|-| | .+
T Consensus 99 r~~~ie~~k~~i~~aa~lGi~~v~-~nf~p~~~w~rt~~~~~~~~G~~~~~f~~~~~~~~d~~~~~~~~pg~~~~~~~~~ 177 (386)
T 3bdk_A 99 RDALIENYKTSIRNVGAAGIPVVC-YNFMPVFDWTRSDLHHPLPDGSTSLAFLKSDLAGVDPVADDLNLPGWDSSYSKEE 177 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEE-ECCCSSCSCCCSEEEEECTTSCEEEEEEGGGGSSCCC--------------CCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEE-EcCcccccccccccccccCCCccccccchhhhhcccchhhccCCCCccccccHHH
Confidence 577889999999999999999885 44441 11111 0 00
Q ss_pred ------------HHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCC-----CCH--HHHHHHHHHHHHcCCCCeEE
Q 038167 98 ------------EIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGL-----VSE--PIRVTAEKVMRATSKNTRIV 158 (292)
Q Consensus 98 ------------Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~-----lp~--~~~~~i~~~e~~T~~~~~~~ 158 (292)
.-+.+.+.+.++|++++.. ..++||++-+--+-.. +|. .-.+.+.++.+.+. ...+.
T Consensus 178 ~~~~~~~y~~~~~~e~~w~~l~~~L~~i~~~---Aee~GV~Laiep~dpp~~~~Gl~riv~t~e~~~rll~~vd-sp~~g 253 (386)
T 3bdk_A 178 MKAIIENYRQNISEEDLWANLEYFIKAILPT---AEEAGVKMAIHPDDPPYGIFGLPRIITGQEAVERFLNLYD-SEHNG 253 (386)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH---HHSSSCEEEECCCSSSSCCTTCCCCCCSHHHHHHHHHTTC-STTEE
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHHHHH---HHHhCCEEEEeeCCcccccccCCceeCCHHHHHHHHHhcC-CCCEE
Confidence 1134555666667766643 3578999988654111 110 00122333334433 23467
Q ss_pred EEEEec---CCCHHHHHHHHHHHH
Q 038167 159 ILICLA---YSSTEEIVHTVEETC 179 (292)
Q Consensus 159 lni~~~---Y~Gr~EIv~a~~~l~ 179 (292)
|++|.+ +..-++++.++++..
T Consensus 254 l~lDtG~l~~~~~~D~~~~i~~~~ 277 (386)
T 3bdk_A 254 ITMCVGSYASDPKNDVLAMTEYAL 277 (386)
T ss_dssp EEEEHHHHHTSTTCCHHHHHHHHH
T ss_pred EEEccCchhhcCCCCHHHHHHHhC
Confidence 778763 332567888888886
No 38
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=39.14 E-value=26 Score=31.84 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=33.1
Q ss_pred CCEEEEEecCCchHHHhcCCCccchhHHhHHH--------H-----HHHHHHHHHh--CCCCeEEE
Q 038167 34 PNHIAFILDGNRRFAKKHNLAGEGAGHRAGFL--------T-----LMSLLKYCAE--LSVKYVSI 84 (292)
Q Consensus 34 P~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~--------~-----l~~ii~wc~~--~GI~~vSv 84 (292)
|.|++++.||.+.-=|..-.+ ...+++.... . +..+-+++.. +||+++..
T Consensus 59 p~~~vvvFD~~~~tfR~~~~~-~YKa~R~~~p~~~~~~~e~L~~q~~~~ikell~~~~~gip~i~~ 123 (290)
T 1exn_A 59 ARTTIVLGDKGKSVFRLEHLP-EYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTFTI 123 (290)
T ss_dssp EEEEEEECCBSCCHHHHHHCT-TTTHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTTSCEECC
T ss_pred CCeEEEEEcCCCchhhhhCcH-HHHcCCCCCCccccccchhHHHhhHHHHHHHHHhhCCCCcEEEE
Confidence 899999999655433443456 6777777654 2 3344555555 89998764
No 39
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=38.23 E-value=1.2e+02 Score=25.61 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.7
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEee
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAF 87 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYaf 87 (292)
.....+.+.+.++.|.++|++.|.+..+
T Consensus 83 r~~~~~~~~~~i~~a~~lG~~~v~~~~~ 110 (290)
T 2qul_A 83 RDAGTEYVKRLLDDCHLLGAPVFAGLTF 110 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeecc
Confidence 4567789999999999999999987543
No 40
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=38.22 E-value=1.6e+02 Score=25.97 Aligned_cols=105 Identities=10% Similarity=0.141 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHH
Q 038167 62 AGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIR 141 (292)
Q Consensus 62 ~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~ 141 (292)
.-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------gr~pv-i~Gvg~~~t~~ai 86 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVN-----------KRIPV-IAGTGSNNTAASI 86 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCSSHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCcccHHHHH
Confidence 45688999999999999999999988888889999999999887765532 12332 3443322223344
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHH
Q 038167 142 VTAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLV 181 (292)
Q Consensus 142 ~~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~ 181 (292)
+.++.+++. ..+..+-+.-.| -+.++|.+-.+.+++.
T Consensus 87 ~la~~a~~~---Gadavlv~~P~y~~~s~~~l~~~f~~ia~a 125 (291)
T 3a5f_A 87 AMSKWAESI---GVDGLLVITPYYNKTTQKGLVKHFKAVSDA 125 (291)
T ss_dssp HHHHHHHHT---TCSEEEEECCCSSCCCHHHHHHHC-CTGGG
T ss_pred HHHHHHHhc---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence 444444443 344555555555 3788888887777665
No 41
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=37.92 E-value=99 Score=27.06 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=37.4
Q ss_pred HhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcE--EEE
Q 038167 61 RAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVR--VCF 129 (292)
Q Consensus 61 ~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~ir--v~~ 129 (292)
....+.+.+.++.|.++|++.|.+..... ..+.+.... +.+.+++++.. ..++||+ +-+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~---~~~~~~~~~----~~~~l~~l~~~---a~~~Gv~~~l~~ 164 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQPMMPT---ITTHDEAKL----VCDIFNQASDV---IKAEGIATGFGY 164 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECSCCC---CCSHHHHHH----HHHHHHHHHHH---HHHTTCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCCC---CCCHHHHHH----HHHHHHHHHHH---HHHCCCcceEEE
Confidence 56678899999999999999998853221 123444433 34444444432 3457777 654
No 42
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=37.74 E-value=2.1e+02 Score=25.20 Aligned_cols=105 Identities=11% Similarity=0.062 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|-.+. ...+
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------gr~pv-iaGvg~~---~t~~ 84 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLAD-----------GRIPV-IAGTGAN---ATAE 84 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCS---SHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCc---cHHH
Confidence 4578899999999999999999988888889999999999887765532 12332 3343321 2344
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
+++.+....+-..+..+-+.-.| -+.++|++-.+.+++.+
T Consensus 85 ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~ 126 (292)
T 2ojp_A 85 AISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHT 126 (292)
T ss_dssp HHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 55544444443445555555555 37899999999888753
No 43
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=36.78 E-value=2.4e+02 Score=25.53 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+.+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..+
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~-----------grvpV-iaGvg~~st~eai~ 120 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILR-----------GRRTL-MAGIGALRTDEAVA 120 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSEE-EEEECCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCCCHHHHHH
Confidence 4688999999999999999999988888889999999999887766531 12333 33433322344455
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... +..+-+.-.| -+.++|++-.+.+++.+
T Consensus 121 la~~A~~~Ga---davlv~~P~Y~~~s~~~l~~~f~~VA~a~ 159 (332)
T 2r8w_A 121 LAKDAEAAGA---DALLLAPVSYTPLTQEEAYHHFAAVAGAT 159 (332)
T ss_dssp HHHHHHHHTC---SEEEECCCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCC---CEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 5555555433 3444444344 37899999999998874
No 44
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=35.92 E-value=2.3e+02 Score=25.00 Aligned_cols=105 Identities=8% Similarity=0.088 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| +.|--+.=..+..+
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------gr~pv-iaGvg~~~t~~ai~ 87 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVAN-----------KRIPI-IAGTGANSTREAIE 87 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhC-----------CCCeE-EEeCCCCCHHHHHH
Confidence 3588899999999999999988888888888999999999887766532 12333 33543322344455
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... +..+-+.-.| -+.+++++-.+.+++.+
T Consensus 88 la~~a~~~Ga---davlv~~P~y~~~~~~~l~~~f~~ia~a~ 126 (291)
T 3tak_A 88 LTKAAKDLGA---DAALLVTPYYNKPTQEGLYQHYKAIAEAV 126 (291)
T ss_dssp HHHHHHHHTC---SEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCC---CEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 5555555433 3444444334 46889999999998874
No 45
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=35.64 E-value=2.4e+02 Score=25.24 Aligned_cols=105 Identities=9% Similarity=0.107 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..+
T Consensus 42 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~-----------grvpV-iaGvg~~st~eai~ 109 (314)
T 3qze_A 42 DWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVK-----------GRIPV-IAGTGANSTREAVA 109 (314)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCcCHHHHHH
Confidence 4688999999999999999999988889899999999999887766532 12333 34543322344444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. ..+..+-+.-.| -+.+++++-.+.+++.+
T Consensus 110 la~~A~~~---Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 148 (314)
T 3qze_A 110 LTEAAKSG---GADACLLVTPYYNKPTQEGMYQHFRHIAEAV 148 (314)
T ss_dssp HHHHHHHT---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHc---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 45444443 334444444334 36789999999998874
No 46
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=35.32 E-value=2.4e+02 Score=25.06 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|--+.=..+..+
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~-----------grvpV-iaGvg~~~t~~ai~ 98 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVD-----------KRVPV-IAGTGSNNTHASID 98 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCceE-EeCCCCCCHHHHHH
Confidence 4688999999999999999999888888889999999999887765532 12332 34433222234444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. .....+-+.-.| -+.++|++-.+.+++.+
T Consensus 99 la~~A~~~---Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 137 (301)
T 1xky_A 99 LTKKATEV---GVDAVMLVAPYYNKPSQEGMYQHFKAIAEST 137 (301)
T ss_dssp HHHHHHHT---TCSEEEEECCCSSCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhc---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 44444443 334455554444 37899999999998764
No 47
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=34.97 E-value=1.2e+02 Score=25.45 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=39.5
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEe
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFI 130 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~i 130 (292)
.+...+.+.+.++.|.++|++.|.+..... ...+.++ -++.+.+.+.+++.. ..++|+++-+-
T Consensus 79 ~~~~~~~~~~~i~~A~~lG~~~v~~~~~p~--~~~~~~~---~~~~~~~~l~~l~~~---a~~~Gv~l~lE 141 (281)
T 3u0h_A 79 FLRELSLLPDRARLCARLGARSVTAFLWPS--MDEEPVR---YISQLARRIRQVAVE---LLPLGMRVGLE 141 (281)
T ss_dssp HHHHHHTHHHHHHHHHHTTCCEEEEECCSE--ESSCHHH---HHHHHHHHHHHHHHH---HGGGTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeecCC--CCCcchh---hHHHHHHHHHHHHHH---HHHcCCEEEEE
Confidence 456778899999999999999998653321 1233322 334444555555432 34678887654
No 48
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=34.41 E-value=1.8e+02 Score=25.95 Aligned_cols=105 Identities=10% Similarity=-0.035 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|-.+.=..+..+
T Consensus 23 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai~ 90 (300)
T 3eb2_A 23 RADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQ-----------RRVPV-VAGVASTSVADAVA 90 (300)
T ss_dssp CHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHT-----------TSSCB-EEEEEESSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCCCHHHHHH
Confidence 4688999999999999999988888888889999999999888766532 11222 22322212244455
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++.. ....+-+.-.| -+.+++++-.+.+++.+
T Consensus 91 la~~a~~~G---adavlv~~P~y~~~~~~~l~~~f~~va~a~ 129 (300)
T 3eb2_A 91 QAKLYEKLG---ADGILAILEAYFPLKDAQIESYFRAIADAV 129 (300)
T ss_dssp HHHHHHHHT---CSEEEEEECCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC---CCEEEEcCCCCCCCCHHHHHHHHHHHHHHC
Confidence 555555543 34445555445 36889999999998874
No 49
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=33.96 E-value=1.4e+02 Score=26.12 Aligned_cols=59 Identities=12% Similarity=-0.000 Sum_probs=37.5
Q ss_pred HhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEE
Q 038167 61 RAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCF 129 (292)
Q Consensus 61 ~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~ 129 (292)
....+.+.+.++.|.++|++.|.+-... . ..+.++.+ .+.+.|++++.. ..++||++-+
T Consensus 110 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~-~--~~~~~~~~----~~~~~l~~l~~~---a~~~Gv~l~l 168 (305)
T 3obe_A 110 PKFDEFWKKATDIHAELGVSCMVQPSLP-R--IENEDDAK----VVSEIFNRAGEI---TKKAGILWGY 168 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEECCCC-C--CSSHHHHH----HHHHHHHHHHHH---HHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeCCCC-C--CCCHHHHH----HHHHHHHHHHHH---HHHcCCEEEE
Confidence 4557889999999999999999974221 1 12344443 334455554432 3467888765
No 50
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=33.63 E-value=2.1e+02 Score=23.79 Aligned_cols=81 Identities=19% Similarity=0.109 Sum_probs=44.6
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCH
Q 038167 59 GHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSE 138 (292)
Q Consensus 59 Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~ 138 (292)
......+.+.+.++.|.++|++.|.++.-.... ..+...+.-++.+.+.+++++.. ..++|+++-+--....-|+
T Consensus 70 ~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~--~~~~~~~~~~~~~~~~l~~l~~~---a~~~gv~l~lEn~~~~~~~ 144 (254)
T 3ayv_A 70 VRGLTLRRLLFGLDRAAELGADRAVFHSGIPHG--RTPEEALERALPLAEALGLVVRR---ARTLGVRLLLENSHEPHPE 144 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEECCCCTT--CCHHHHHHTHHHHHHHTHHHHHH---HHHHTCEEEEECSSCSSGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcc--cccccHHHHHHHHHHHHHHHHHH---HhhcCCEEEEcCCCCCCHH
Confidence 456678899999999999999999887432211 11111122234444455554432 2346777755432222334
Q ss_pred HHHHHH
Q 038167 139 PIRVTA 144 (292)
Q Consensus 139 ~~~~~i 144 (292)
++...+
T Consensus 145 ~~~~l~ 150 (254)
T 3ayv_A 145 ALRPVL 150 (254)
T ss_dssp GTHHHH
T ss_pred HHHHHH
Confidence 444444
No 51
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=33.54 E-value=2.9e+02 Score=25.55 Aligned_cols=104 Identities=10% Similarity=0.022 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+.+-.-+.|...-+.+|-..+++...+... ..+.| +.|--+.=..+..+
T Consensus 78 D~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~-----------grvpV-iaGvg~~st~eai~ 145 (360)
T 4dpp_A 78 DLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-----------GSIKV-IGNTGSNSTREAIH 145 (360)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TTSEE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhC-----------CCCeE-EEecCCCCHHHHHH
Confidence 4688999999999999999999888888888999999988887665531 12443 33443322333444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHH
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLV 181 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~ 181 (292)
.++.+++. .....+-+.-.| -+.++|++-.+.+++.
T Consensus 146 la~~A~~~---Gadavlvv~PyY~k~sq~gl~~hf~~IA~a 183 (360)
T 4dpp_A 146 ATEQGFAV---GMHAALHINPYYGKTSIEGLIAHFQSVLHM 183 (360)
T ss_dssp HHHHHHHT---TCSEEEEECCCSSCCCHHHHHHHHHTTGGG
T ss_pred HHHHHHHc---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence 44444443 334445454444 3678888888888764
No 52
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=33.53 E-value=57 Score=27.06 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHH
Q 038167 65 LTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLM 106 (292)
Q Consensus 65 ~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~ 106 (292)
....+.+..|.+.|++.|.|=++|+.++.=|++++...|..+
T Consensus 89 ~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~~~ 130 (168)
T 3gqe_A 89 EAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHL 130 (168)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHH
Confidence 345566777778999999999999999999999888766443
No 53
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=32.54 E-value=71 Score=28.81 Aligned_cols=41 Identities=7% Similarity=0.013 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 64 FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 64 ~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
.+++..+++.|.+.|++.|-+=||+...|.-|++||..++.
T Consensus 197 ~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~ 237 (277)
T 3sig_A 197 RGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFA 237 (277)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHH
Confidence 56788899999999999999999999999999999998865
No 54
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=32.24 E-value=2.7e+02 Score=24.81 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+.. ..+.| ++|-.+.=..+..+
T Consensus 27 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~------------grvpV-iaGvg~~~t~~ai~ 93 (313)
T 3dz1_A 27 DDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA------------KSMQV-IVGVSAPGFAAMRR 93 (313)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC------------TTSEE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc------------CCCcE-EEecCCCCHHHHHH
Confidence 468899999999999999999988888888999999998888765542 12444 44654433445555
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHhh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVTK 183 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~~ 183 (292)
.++.+++...+ .+ +- .-+| -+.++|++-.+.+++.+.
T Consensus 94 la~~A~~~Gad--av-lv-~~P~~~~s~~~l~~~f~~va~a~~ 132 (313)
T 3dz1_A 94 LARLSMDAGAA--GV-MI-APPPSLRTDEQITTYFRQATEAIG 132 (313)
T ss_dssp HHHHHHHHTCS--EE-EE-CCCTTCCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCC--EE-EE-CCCCCCCCHHHHHHHHHHHHHhCC
Confidence 55555655332 22 22 2333 468899999999988754
No 55
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=32.24 E-value=96 Score=27.09 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=40.0
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCeEEEEeec--cCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcE-EEE
Q 038167 59 GHRAGFLTLMSLLKYCAELSVKYVSIYAFS--IDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVR-VCF 129 (292)
Q Consensus 59 Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS--~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~ir-v~~ 129 (292)
....+.+.+.+.++.|.++|++.|.+..-+ ...+. .+...+.-++.+.+.+++++.. ..++|++ +-+
T Consensus 108 ~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~---a~~~Gv~~l~l 177 (316)
T 3qxb_A 108 LQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADAL-NPARREEIYAIARDMWIELAAY---AKRQGLSMLYV 177 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHT-CHHHHHHHHHHHHHHHHHHHHH---HHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccC-CcccHHHHHHHHHHHHHHHHHH---HHhcCCeEEEE
Confidence 345677889999999999999999763222 11111 1222233445556666665542 3456777 654
No 56
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=32.11 E-value=2.8e+02 Score=24.83 Aligned_cols=105 Identities=11% Similarity=0.020 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHH
Q 038167 64 FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVT 143 (292)
Q Consensus 64 ~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~ 143 (292)
++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+... ..+.| ++|-.+.=..+..+.
T Consensus 27 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpV-iaGvg~~~t~~ai~l 94 (311)
T 3h5d_A 27 FDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVN-----------GRVPL-IAGVGTNDTRDSIEF 94 (311)
T ss_dssp TTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSC-----------SSSCE-EEECCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCcCHHHHHHH
Confidence 477888999999999999999998889999999999999887655421 12333 334332222333333
Q ss_pred HHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 144 AEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 144 i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
++.+++. +.....+-+.-.| -+.+++++-.+.+++.+
T Consensus 95 a~~A~~~--Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~ 133 (311)
T 3h5d_A 95 VKEVAEF--GGFAAGLAIVPYYNKPSQEGMYQHFKAIADAS 133 (311)
T ss_dssp HHHHHHS--CCCSEEEEECCCSSCCCHHHHHHHHHHHHHSC
T ss_pred HHHHHhc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 4333332 2213344443333 36789999999998764
No 57
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=32.10 E-value=2.4e+02 Score=25.58 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=56.8
Q ss_pred HHHHHhCCCCeEEEEe-----eccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCC----CCC-CHHH
Q 038167 71 LKYCAELSVKYVSIYA-----FSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNL----GLV-SEPI 140 (292)
Q Consensus 71 i~wc~~~GI~~vSvYa-----fS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~----~~l-p~~~ 140 (292)
++.+.+.|++.|.+|. +...|++++.+|.-..+.-+.++.. +.|..+++.-.- ... |+.+
T Consensus 102 i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak----------~~G~~v~~~~~~~~~~~~~~~~~~ 171 (337)
T 3ble_A 102 VDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAI----------KSGLKINVYLEDWSNGFRNSPDYV 171 (337)
T ss_dssp HHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHH----------HTTCEEEEEEETHHHHHHHCHHHH
T ss_pred HHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH----------HCCCEEEEEEEECCCCCcCCHHHH
Confidence 5667788999999997 5556889998876444433333322 345565543211 111 3444
Q ss_pred HHHHHHHHHHcCCCCeEEEEEEec--CCCHHHHHHHHHHHHHHh
Q 038167 141 RVTAEKVMRATSKNTRIVILICLA--YSSTEEIVHTVEETCLVT 182 (292)
Q Consensus 141 ~~~i~~~e~~T~~~~~~~lni~~~--Y~Gr~EIv~a~~~l~~~~ 182 (292)
.+.++.+.+... -.|++|-. +.-=.++.+.++.+.+.+
T Consensus 172 ~~~~~~~~~~Ga----~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 211 (337)
T 3ble_A 172 KSLVEHLSKEHI----ERIFLPDTLGVLSPEETFQGVDSLIQKY 211 (337)
T ss_dssp HHHHHHHHTSCC----SEEEEECTTCCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC----CEEEEecCCCCcCHHHHHHHHHHHHHhc
Confidence 444544444322 25677654 445667777777776654
No 58
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=31.53 E-value=2.8e+02 Score=24.76 Aligned_cols=104 Identities=6% Similarity=-0.042 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+-.-+.|...-+.+|-..+++...+... ..+.| ++|--.. ..+..+
T Consensus 31 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~-----------grvpV-iaGvg~~-t~~ai~ 97 (316)
T 3e96_A 31 DWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVH-----------GRALV-VAGIGYA-TSTAIE 97 (316)
T ss_dssp CHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSEE-EEEECSS-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC-----------CCCcE-EEEeCcC-HHHHHH
Confidence 4588999999999999999988887778889999999999887766532 12333 3343222 244444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC--CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY--SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y--~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++... ...+-+.-.| -+.++|++-.+.+++.+
T Consensus 98 la~~A~~~Ga---davlv~~P~y~~~s~~~l~~~f~~va~a~ 136 (316)
T 3e96_A 98 LGNAAKAAGA---DAVMIHMPIHPYVTAGGVYAYFRDIIEAL 136 (316)
T ss_dssp HHHHHHHHTC---SEEEECCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC---CEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 4555555433 3344332223 37899999999998875
No 59
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=29.33 E-value=2.1e+02 Score=22.60 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCCeEEEEe---eccCCC-CCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHH
Q 038167 65 LTLMSLLKYCAELSVKYVSIYA---FSIDNF-KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPI 140 (292)
Q Consensus 65 ~~l~~ii~wc~~~GI~~vSvYa---fS~eN~-~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~ 140 (292)
.....+-.||.+.|+..+-+|. .|..++ +|| ++..|++.+. .+ +..+.+-++-++++|....
T Consensus 26 ~Q~~~l~~~a~~~g~~i~~~~~D~g~Sg~~~~~Rp--~l~~ll~~~~--------~g----~~~~d~lvv~~ldRl~R~~ 91 (167)
T 3guv_A 26 AQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGRI--QFNRMMEDIK--------SG----KDGVSFVLVFKLSRFARNA 91 (167)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCCSSSSSCCCH--HHHHHHHHHH--------TC----TTCCSEEEESCGGGTCSSH
T ss_pred HHHHHHHHHHHhCCCEEEEEEeecCCCCCCcccCH--HHHHHHHHHH--------cC----CCCccEEEEEeCchhcCCH
Confidence 4466677889999999888874 577775 564 3444544321 10 1115677888888888776
Q ss_pred HHHHHHHHHHcC
Q 038167 141 RVTAEKVMRATS 152 (292)
Q Consensus 141 ~~~i~~~e~~T~ 152 (292)
...+.-++....
T Consensus 92 ~~~~~~~~~l~~ 103 (167)
T 3guv_A 92 ADVLSTLQIMQD 103 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 665554444433
No 60
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=29.15 E-value=2.9e+02 Score=24.19 Aligned_cols=102 Identities=13% Similarity=0.011 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+.. .| -++|--+.=..+..+
T Consensus 17 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~------------~g---vi~Gvg~~~t~~ai~ 81 (286)
T 2r91_A 17 DPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAA------------RR---VIVQVASLNADEAIA 81 (286)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHC------------SS---EEEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHh------------CC---EEEeeCCCCHHHHHH
Confidence 357889999999999999999998888888999999998888765542 22 345543322344444
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC---CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY---SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y---~Gr~EIv~a~~~l~~~~ 182 (292)
.++.+++. ..+..+-+.-.| -+.++|++-.+.+++.+
T Consensus 82 la~~A~~~---Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~ 121 (286)
T 2r91_A 82 LAKYAESR---GAEAVASLPPYYFPRLSERQIAKYFRDLCSAV 121 (286)
T ss_dssp HHHHHHHT---TCSEEEECCSCSSTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc
Confidence 44444443 334444444444 36799999999998764
No 61
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=29.07 E-value=1.1e+02 Score=28.85 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCC----C--------CHHHHHHHHHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFK----R--------TQNEIRYLMDLMLEKMEF 112 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~----R--------~~~Ev~~Lm~l~~~~l~~ 112 (292)
..+.+.+.++.+.++|+.+|++|.|+...+- + +.+|...++..+.+.+.+
T Consensus 218 t~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~ 279 (457)
T 1olt_A 218 TPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQ 279 (457)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999999843331 1 235555566666555543
No 62
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=28.49 E-value=2e+02 Score=24.38 Aligned_cols=63 Identities=8% Similarity=0.068 Sum_probs=40.0
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCeEEEEee-ccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec
Q 038167 59 GHRAGFLTLMSLLKYCAELSVKYVSIYAF-SIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG 131 (292)
Q Consensus 59 Gh~~G~~~l~~ii~wc~~~GI~~vSvYaf-S~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG 131 (292)
......+.+.+.++.|.++|++.|.+..- ..++ ..+..+.+ .+.+++++. ...++|+++-+-.
T Consensus 96 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~---~~~~~~~~----~~~l~~l~~---~a~~~Gv~l~lE~ 159 (290)
T 3tva_A 96 TRASRVAEMKEISDFASWVGCPAIGLHIGFVPES---SSPDYSEL----VRVTQDLLT---HAANHGQAVHLET 159 (290)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCT---TSHHHHHH----HHHHHHHHH---HHHTTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCccc---chHHHHHH----HHHHHHHHH---HHHHcCCEEEEec
Confidence 34667899999999999999999998632 2222 23333333 444444443 2346788876644
No 63
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=28.24 E-value=2.8e+02 Score=23.57 Aligned_cols=64 Identities=6% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCC-CHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKR-TQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG 131 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R-~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG 131 (292)
.....+.+.+.++.|.++|++.|.+..+... ... ..+..+ .+.+.+++++.. ..++|+++-+--
T Consensus 103 r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~-~~~~~~~~~~----~~~~~l~~l~~~---a~~~Gv~l~lEn 167 (295)
T 3cqj_A 103 RAQGLEIMRKAIQFAQDVGIRVIQLAGYDVY-YQEANNETRR----RFRDGLKESVEM---ASRAQVTLAMEI 167 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCCSCS-SSCCCHHHHH----HHHHHHHHHHHH---HHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCC-cCcCHHHHHH----HHHHHHHHHHHH---HHHhCCEEEEee
Confidence 3456788999999999999999987643220 111 233333 333444444331 235678776543
No 64
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=27.20 E-value=1.9e+02 Score=24.98 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 64 FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 64 ~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
.....+.+..|.+.|++.|.|=++||.++.=|++++..+|-
T Consensus 134 ~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~ 174 (221)
T 3q71_A 134 EDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELII 174 (221)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHH
Confidence 34455667778889999999999999999999998877653
No 65
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1
Probab=27.07 E-value=85 Score=23.84 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=28.0
Q ss_pred cchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCC
Q 038167 56 EGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDN 91 (292)
Q Consensus 56 ~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN 91 (292)
...|.-.|-.-+..++.++.+.|++.|.++.++ +|
T Consensus 96 ~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~-~N 130 (170)
T 2ge3_A 96 AYRNKGLGARLMRRTLDAAHEFGLHRIELSVHA-DN 130 (170)
T ss_dssp GGTTSSHHHHHHHHHHHHHHHHTCCEEEEEEET-TC
T ss_pred HHhCCCHHHHHHHHHHHHHHHCCceEEEEEEEc-CC
Confidence 334555578889999999999999999999865 44
No 66
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=26.92 E-value=3.3e+02 Score=23.98 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=59.1
Q ss_pred HHHHHhCCCCeEEEEeecc-----CCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEE-----ecCC--CCC-C
Q 038167 71 LKYCAELSVKYVSIYAFSI-----DNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCF-----IGNL--GLV-S 137 (292)
Q Consensus 71 i~wc~~~GI~~vSvYafS~-----eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~-----iGd~--~~l-p 137 (292)
++.+.+.|++.|.+|.-.. .|++++.+|.-..+.-..++.. +.|..+++ +|-. ... |
T Consensus 86 i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~----------~~G~~v~~~l~~~~~~~~~~~~~~ 155 (298)
T 2cw6_A 86 FEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQ----------SANISVRGYVSCALGCPYEGKISP 155 (298)
T ss_dssp HHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHH----------HTTCEEEEEEETTTCBTTTBSCCH
T ss_pred HHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHH----------HCCCeEEEEEEEEeeCCcCCCCCH
Confidence 6677889999999986443 4678888776544443333322 34566542 2211 123 4
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEE--ecCCCHHHHHHHHHHHHHHh
Q 038167 138 EPIRVTAEKVMRATSKNTRIVILIC--LAYSSTEEIVHTVEETCLVT 182 (292)
Q Consensus 138 ~~~~~~i~~~e~~T~~~~~~~lni~--~~Y~Gr~EIv~a~~~l~~~~ 182 (292)
+.+.+.++.+.+...+ .++++ +++..=.++.+.++.+.+.+
T Consensus 156 ~~~~~~~~~~~~~Ga~----~i~l~DT~G~~~P~~~~~lv~~l~~~~ 198 (298)
T 2cw6_A 156 AKVAEVTKKFYSMGCY----EISLGDTIGVGTPGIMKDMLSAVMQEV 198 (298)
T ss_dssp HHHHHHHHHHHHTTCS----EEEEEETTSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCC----EEEecCCCCCcCHHHHHHHHHHHHHhC
Confidence 5566666666665332 56666 55666778888777777664
No 67
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=26.90 E-value=80 Score=28.70 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeec---cCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFS---IDNFKRTQNEIRYLMDLMLEKMEFLLRE 116 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS---~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~ 116 (292)
=.+.|.++..||..+||..+.+=.+. .+...+-+.||+..-+.+.+.+++.+..
T Consensus 250 Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~r 306 (310)
T 3zym_A 250 RMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILAR 306 (310)
T ss_dssp HHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 35679999999999998877432221 1235566788888888888888877653
No 68
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=26.64 E-value=1.7e+02 Score=24.75 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 65 LTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 65 ~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
..+.+.+..|.+.|++.|.+=++|+.++.=|++++..+|-
T Consensus 115 ~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~ 154 (199)
T 3kh6_A 115 KTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNII 154 (199)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeecccccCCCCcCHHHHHHHHH
Confidence 4566667788899999999999999999999999887764
No 69
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=26.61 E-value=92 Score=28.20 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEE
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSI 84 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSv 84 (292)
.....+.+.++++.|.++|++.|++
T Consensus 90 r~~~i~~~~~~i~~a~~lG~~~v~~ 114 (367)
T 1tz9_A 90 RDHYIDNYRQTLRNLGKCGISLVCY 114 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4567888999999999999999977
No 70
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A*
Probab=26.60 E-value=99 Score=24.70 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=25.9
Q ss_pred chhHHhHHHHHHHHHHHHHh-CCCCeEEEEeec
Q 038167 57 GAGHRAGFLTLMSLLKYCAE-LSVKYVSIYAFS 88 (292)
Q Consensus 57 ~~Gh~~G~~~l~~ii~wc~~-~GI~~vSvYafS 88 (292)
..|.-.|.+-+..++.|+.+ .|++.|.++.++
T Consensus 117 ~rgkGig~~ll~~l~~~a~~~~g~~~i~~~v~~ 149 (218)
T 2vzy_A 117 YQGHGYGTEMRAAVLYFAFAELEAQVATSRSFV 149 (218)
T ss_dssp GTTSSHHHHHHHHHHHHHHHTSCCSEEEEEEET
T ss_pred HcCCCHHHHHHHHHHHHHHhhCCceEEEEEecc
Confidence 33444577889999999998 899999999875
No 71
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=26.32 E-value=1.8e+02 Score=24.19 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 64 FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 64 ~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
.....+.+..|.+.|++.|.+=++||.++.=|++++..+|-
T Consensus 103 ~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~ 143 (183)
T 4abl_A 103 KSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAII 143 (183)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHH
Confidence 34556677888899999999999999999999999887654
No 72
>3fbu_A Acetyltransferase, GNAT family; structur genomics, PSI2, MCSG, protein structure initiative, midwest for structural genomics; HET: COA; 1.80A {Bacillus anthracis str}
Probab=25.85 E-value=1.1e+02 Score=22.93 Aligned_cols=33 Identities=9% Similarity=-0.073 Sum_probs=26.1
Q ss_pred cchhHHhHHHHHHHHHHHHHhC-CCCeEEEEeec
Q 038167 56 EGAGHRAGFLTLMSLLKYCAEL-SVKYVSIYAFS 88 (292)
Q Consensus 56 ~~~Gh~~G~~~l~~ii~wc~~~-GI~~vSvYafS 88 (292)
...|.-.|..-+..++.|+.+. |++.|.+...+
T Consensus 93 ~~rg~Gig~~ll~~~~~~a~~~~~~~~i~l~v~~ 126 (168)
T 3fbu_A 93 KYFNKGYASEAAQATLKYGFKEMKLHRIIATCQP 126 (168)
T ss_dssp GGTTSSHHHHHHHHHHHHHHHTSCCSEEEEEECT
T ss_pred HHhcCCHHHHHHHHHHHHHHhhCCceEEEEEecc
Confidence 3445555788899999999876 99999998865
No 73
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=25.65 E-value=1.1e+02 Score=23.51 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCCeEEEEe---eccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHH
Q 038167 65 LTLMSLLKYCAELSVKYVSIYA---FSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIR 141 (292)
Q Consensus 65 ~~l~~ii~wc~~~GI~~vSvYa---fS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~ 141 (292)
.....+-.||.+.|+..+-+|. .|..|++||. ...|++. +....+.+-++-++++|.....
T Consensus 25 ~Q~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~--l~~ll~~--------------~~~g~~d~lvv~~ldRl~R~~~ 88 (138)
T 3bvp_A 25 EQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPA--MQRLIND--------------IENKAFDTVLVYKLDRLSRSVR 88 (138)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHH--HHHHHHG--------------GGGTSCSEEEESSHHHHCSCHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHH--HHHHHHH--------------HHhCCCCEEEEEeCCcccccHH
Confidence 4566677899999999888884 6888888763 4444432 2233456668888877776665
Q ss_pred H
Q 038167 142 V 142 (292)
Q Consensus 142 ~ 142 (292)
.
T Consensus 89 ~ 89 (138)
T 3bvp_A 89 D 89 (138)
T ss_dssp H
T ss_pred H
Confidence 5
No 74
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=24.56 E-value=1.3e+02 Score=26.74 Aligned_cols=44 Identities=7% Similarity=-0.001 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEK 109 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~ 109 (292)
..+.+.++++-..++|+..+++-+- +---.|.++..+++.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~Ga~~i~l~DT---~G~~~P~~~~~lv~~l~~~ 197 (298)
T 2cw6_A 154 SPAKVAEVTKKFYSMGCYEISLGDT---IGVGTPGIMKDMLSAVMQE 197 (298)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEET---TSCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCC---CCCcCHHHHHHHHHHHHHh
Confidence 4577788888888888888887762 3345677787777666543
No 75
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=24.29 E-value=3e+02 Score=22.73 Aligned_cols=111 Identities=10% Similarity=0.063 Sum_probs=58.2
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCC-----
Q 038167 59 GHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNL----- 133 (292)
Q Consensus 59 Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~----- 133 (292)
......+.+.+.++.|.++|++.|.+..-.......+.++ -++.+.+.+++++.. ..++|+++-+-...
T Consensus 77 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~---~~~~~~~~l~~l~~~---a~~~gv~l~lE~~~~~~~~ 150 (275)
T 3qc0_A 77 GREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDA---ARRMVVEGIAAVLPH---ARAAGVPLAIEPLHPMYAA 150 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHH---HHHHHHHHHHHHHHH---HHHHTCCEEECCCCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHH---HHHHHHHHHHHHHHH---HHHcCCEEEEeECCCcccC
Confidence 4556788999999999999999999875221111223322 224444445544432 23567776554211
Q ss_pred --CCC--CHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHH
Q 038167 134 --GLV--SEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCL 180 (292)
Q Consensus 134 --~~l--p~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~ 180 (292)
..+ ++++... ++.... +-++.+-++=.+-+ .++.++++.+..
T Consensus 151 ~~~~~~~~~~~~~l---~~~~~~-~vg~~~D~~h~~~~-~d~~~~l~~~~~ 196 (275)
T 3qc0_A 151 DRACVNTLGQALDI---CETLGP-GVGVAIDVYHVWWD-PDLANQIARAGK 196 (275)
T ss_dssp TTBSCCCHHHHHHH---HHHHCT-TEEEEEEHHHHTTC-TTHHHHHHHHHH
T ss_pred CccccCCHHHHHHH---HHHhCc-ccEEEEEhhhheeC-CCHHHHHHHcCc
Confidence 112 2333332 233323 44444433333434 467777777753
No 76
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=24.07 E-value=3.1e+02 Score=22.70 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=39.1
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG 131 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG 131 (292)
.....+.+.+.++.|.++|++.|.+...... ...+.++ -++.+.+.+++++.. ..++|+++-+--
T Consensus 79 ~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~-~~~~~~~---~~~~~~~~l~~l~~~---a~~~gv~l~lEn 143 (278)
T 1i60_A 79 HNEIITEFKGMMETCKTLGVKYVVAVPLVTE-QKIVKEE---IKKSSVDVLTELSDI---AEPYGVKIALEF 143 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECCBCS-SCCCHHH---HHHHHHHHHHHHHHH---HGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCCCC-CCCCHHH---HHHHHHHHHHHHHHH---HHhcCCEEEEEe
Confidence 4556888999999999999999998543211 1123222 223344445544432 345788876644
No 77
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=23.92 E-value=2.8e+02 Score=23.02 Aligned_cols=101 Identities=10% Similarity=0.054 Sum_probs=0.0
Q ss_pred chHHHhcCCCccchhH---------HhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHH-HHHHHHHh
Q 038167 45 RRFAKKHNLAGEGAGH---------RAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLM-LEKMEFLL 114 (292)
Q Consensus 45 RR~A~~~gl~~~~~Gh---------~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~-~~~l~~l~ 114 (292)
++.++++|+. ....| ..-.+.+.+.++.|.++|++.|.+....... .-.+.+ .+.+++++
T Consensus 57 ~~~~~~~gl~-~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~---------~~~~~~~~~~l~~l~ 126 (272)
T 2q02_A 57 RNLAEKYGLE-IVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGT---------IVPPEVTVEAIKRLS 126 (272)
T ss_dssp HHHHHHTTCE-EEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSSB---------CCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCe-EEechhhhccCCcHHHHHHHHHHHHHHHHHhCCCEEEEccCCCch---------hHHHHHHHHHHHHHH
Q ss_pred hhccccccCCcEEEEecC--CCCCCHHHHHHHHHHHHHcCCCCeEEE
Q 038167 115 REDGFLSKYGVRVCFIGN--LGLVSEPIRVTAEKVMRATSKNTRIVI 159 (292)
Q Consensus 115 ~~~~~~~~~~irv~~iGd--~~~lp~~~~~~i~~~e~~T~~~~~~~l 159 (292)
.. ..++|+++-+--. ...+-.......+-+++.. .+-++.+
T Consensus 127 ~~---a~~~gv~l~~E~~~~~~~~~~~~~~~~~l~~~v~-~~~g~~~ 169 (272)
T 2q02_A 127 DL---FARYDIQGLVEPLGFRVSSLRSAVWAQQLIREAG-SPFKVLL 169 (272)
T ss_dssp HH---HHTTTCEEEECCCCSTTCSCCCHHHHHHHHHHHT-CCCEEEE
T ss_pred HH---HHHcCCEEEEEecCCCcccccCHHHHHHHHHHhC-cCeEEEE
No 78
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A
Probab=23.72 E-value=1.3e+02 Score=22.97 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=27.1
Q ss_pred cchhHHhHHHHHHHHHHHHHhCCCCeEEEEeec
Q 038167 56 EGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFS 88 (292)
Q Consensus 56 ~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS 88 (292)
...|.-.|-.-+..++.||.+.|+..|.++.++
T Consensus 93 ~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~ 125 (172)
T 2j8m_A 93 DQRGKGLGVQLLQALIERARAQGLHVMVAAIES 125 (172)
T ss_dssp TCTTSSHHHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred hhcCCCHHHHHHHHHHHHHHHCCccEEEEEEcC
Confidence 344555588889999999999999999998765
No 79
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=23.65 E-value=3.7e+02 Score=23.54 Aligned_cols=102 Identities=12% Similarity=-0.011 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRV 142 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~ 142 (292)
-++.+.++++|..+.||.-+-+..-+.|...-+.+|-..+++...+.. .| -+.|-.+. ...+
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~------------~g---ViaGvg~~---~t~~ 79 (288)
T 2nuw_A 18 NVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVT------------HK---LIFQVGSL---NLND 79 (288)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTC------------SC---EEEECCCS---CHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHh------------CC---eEEeeCCC---CHHH
Confidence 457889999999999999999998888888899999988877654321 23 34454332 2233
Q ss_pred HHHHHHHHcCCCCeEEEEEEecC---CCHHHHHHHHHHHHHHh
Q 038167 143 TAEKVMRATSKNTRIVILICLAY---SSTEEIVHTVEETCLVT 182 (292)
Q Consensus 143 ~i~~~e~~T~~~~~~~lni~~~Y---~Gr~EIv~a~~~l~~~~ 182 (292)
+++.+...-+-..+..+-+.-.| -+.++|.+-.+.+++.+
T Consensus 80 ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~ 122 (288)
T 2nuw_A 80 VMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARIS 122 (288)
T ss_dssp HHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc
Confidence 44444443333344455444444 36799999999998864
No 80
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=23.32 E-value=3.4e+02 Score=22.88 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=38.7
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccC--CCC--CCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSID--NFK--RTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG 131 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~e--N~~--R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG 131 (292)
.....+.+.+.++.|.++|++.|.+...+.- .+. .+.+ ..++.+.+.+++++.. ..++|+++-+--
T Consensus 83 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~---a~~~Gv~l~lEn 152 (294)
T 3vni_A 83 RKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKK---GDWERSVESVREVAKV---AEACGVDFCLEV 152 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHH---HHHHHHHHHHHHHHHH---HHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHH---HHHHHHHHHHHHHHHH---HHHcCCEEEEEe
Confidence 4567888999999999999999985222211 121 2222 2233444455554432 345788876543
No 81
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=22.90 E-value=2.6e+02 Score=23.41 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=40.3
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG 131 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG 131 (292)
.....+.+.+.++.|.++|++.|.+..-+.. ..+.+| -++.+.+.+++++.. .+|+++-+--
T Consensus 84 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~--~~~~~~---~~~~~~~~l~~l~~~-----~~gv~l~lEn 145 (287)
T 2x7v_A 84 WQKSVELLKKEVEICRKLGIRYLNIHPGSHL--GTGEEE---GIDRIVRGLNEVLNN-----TEGVVILLEN 145 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCEECT--TSCHHH---HHHHHHHHHHHHHTT-----CCSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCCCC--CCCHHH---HHHHHHHHHHHHHcc-----cCCCEEEEeC
Confidence 3566788999999999999999988654332 223332 334555666666542 2678776543
No 82
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=22.64 E-value=4.9e+02 Score=24.56 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=52.5
Q ss_pred HHHHHhCCCCeEEEEeecc-----CCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEec-CCCCCC-HHHHHH
Q 038167 71 LKYCAELSVKYVSIYAFSI-----DNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIG-NLGLVS-EPIRVT 143 (292)
Q Consensus 71 i~wc~~~GI~~vSvYafS~-----eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~iG-d~~~lp-~~~~~~ 143 (292)
++.+.+.|++.|.+|.=.. .|++++.+|+-..+.-..++. .+.|..+++.. |-..-+ +.+.+.
T Consensus 116 i~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a----------k~~G~~V~~~~eda~r~d~~~~~~v 185 (423)
T 3ivs_A 116 ARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFV----------KSKGIEVRFSSEDSFRSDLVDLLSL 185 (423)
T ss_dssp HHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHH----------HTTTCEEEEEEESGGGSCHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHH----------HHCCCEEEEEEccCcCCCHHHHHHH
Confidence 4567788999999994322 366777776654433333332 23567776643 333333 455556
Q ss_pred HHHHHHHcCCCCeEEEEEEec--CCCHHHHHHHHHHHHHH
Q 038167 144 AEKVMRATSKNTRIVILICLA--YSSTEEIVHTVEETCLV 181 (292)
Q Consensus 144 i~~~e~~T~~~~~~~lni~~~--Y~Gr~EIv~a~~~l~~~ 181 (292)
++.+.+.... .|++|-. +.-=.++.+.++.+.+.
T Consensus 186 ~~~~~~~Ga~----~i~l~DTvG~~~P~~v~~lv~~l~~~ 221 (423)
T 3ivs_A 186 YKAVDKIGVN----RVGIADTVGCATPRQVYDLIRTLRGV 221 (423)
T ss_dssp HHHHHHHCCS----EEEEEETTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC----ccccCCccCcCCHHHHHHHHHHHHhh
Confidence 6666665442 5788754 44556777777777654
No 83
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=22.59 E-value=2.4e+02 Score=23.27 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 64 FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 64 ~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
.....+.+..|.+.|++.|.+=++|+.++.=|++++..+|-
T Consensus 98 ~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~ 138 (184)
T 1spv_A 98 QDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAV 138 (184)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHH
Confidence 44566667777888999999999999999999999887653
No 84
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=22.56 E-value=3.4e+02 Score=22.63 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=39.2
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEe
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFI 130 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~i 130 (292)
.....+.+.+.++.|.++|++.|.+..-+.. ...+.++ -++.+.+.+++++.. .+|+++-+=
T Consensus 84 r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~-~~~~~~~---~~~~~~~~l~~l~a~-----~~gv~l~lE 145 (285)
T 1qtw_A 84 LEKSRDAFIDEMQRCEQLGLSLLNFHPGSHL-MQISEED---CLARIAESINIALDK-----TQGVTAVIE 145 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECCCBCT-TTSCHHH---HHHHHHHHHHHHHHH-----CSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcCCCC-CCCCHHH---HHHHHHHHHHHHHhc-----cCCCEEEEe
Confidence 4567888999999999999999988653321 1113332 234445555555432 467887654
No 85
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=22.47 E-value=1.2e+02 Score=24.20 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
=...+.++++.|.+.|++.|.+=++|+.++.=|.+++..+|.
T Consensus 93 l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~ 134 (149)
T 2eee_A 93 LQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIE 134 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 345566777788889999999999999999999999988764
No 86
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=22.44 E-value=2.8e+02 Score=23.23 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=45.3
Q ss_pred EEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 038167 36 HIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLR 115 (292)
Q Consensus 36 HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~ 115 (292)
.|+|||.+. + -...+.+....+.++||++ ..-.---.|.++++..+.+-.++.
T Consensus 9 ~V~IimgS~---------S--------D~~v~~~a~~~L~~~gi~~----ev~V~SaHR~p~~~~~~~~~a~~~------ 61 (174)
T 3lp6_A 9 RVGVIMGSD---------S--------DWPVMADAAAALAEFDIPA----EVRVVSAHRTPEAMFSYARGAAAR------ 61 (174)
T ss_dssp SEEEEESCG---------G--------GHHHHHHHHHHHHHTTCCE----EEEECCTTTCHHHHHHHHHHHHHH------
T ss_pred eEEEEECcH---------H--------hHHHHHHHHHHHHHcCCCE----EEEEECCCCCHHHHHHHHHHHHhC------
Confidence 599999983 1 3466777788888999994 443344679998776554332211
Q ss_pred hccccccCCcEEEEecCCCCCCHH
Q 038167 116 EDGFLSKYGVRVCFIGNLGLVSEP 139 (292)
Q Consensus 116 ~~~~~~~~~irv~~iGd~~~lp~~ 139 (292)
...+=|-+-|--.-||--
T Consensus 62 ------g~~ViIa~AG~aa~Lpgv 79 (174)
T 3lp6_A 62 ------GLEVIIAGAGGAAHLPGM 79 (174)
T ss_dssp ------TCCEEEEEEESSCCHHHH
T ss_pred ------CCCEEEEecCchhhhHHH
Confidence 123556666766677653
No 87
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=22.43 E-value=1.4e+02 Score=24.18 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
=...+.++++.|.+.|++.|.+=++|+.++.=|.+++..+|.
T Consensus 104 l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~ 145 (160)
T 2jyc_A 104 LQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIE 145 (160)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 345566677778889999999999999999999999988764
No 88
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=22.38 E-value=3.4e+02 Score=22.66 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=39.2
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEe
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFI 130 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~i 130 (292)
.....+.+.+.++.|.++|++.|.+..-. .-..+.++ -++.+.+.+++++.. ..++||++-+-
T Consensus 88 r~~~~~~~~~~i~~A~~lGa~~v~~~~g~--~~~~~~~~---~~~~~~~~l~~l~~~---a~~~Gv~l~lE 150 (269)
T 3ngf_A 88 EQEFRDNVDIALHYALALDCRTLHAMSGI--TEGLDRKA---CEETFIENFRYAADK---LAPHGITVLVE 150 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCBCB--CTTSCHHH---HHHHHHHHHHHHHHH---HGGGTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccCC--CCCCCHHH---HHHHHHHHHHHHHHH---HHHcCCEEEEe
Confidence 45677889999999999999999885431 11122222 233444455554432 34678887664
No 89
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=22.18 E-value=1.5e+02 Score=23.79 Aligned_cols=42 Identities=17% Similarity=0.001 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 63 G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
=...+.+++..+.+.|++.|.+=++|+.++.=|.+++..+|.
T Consensus 89 L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~ 130 (159)
T 2dx6_A 89 VRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVML 130 (159)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHH
Confidence 345566777778889999999999999999999999987764
No 90
>3igr_A Ribosomal-protein-S5-alanine N-acetyltransferase; fisch MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.00A {Vibrio fischeri} SCOP: d.108.1.0
Probab=22.16 E-value=1.3e+02 Score=22.72 Aligned_cols=33 Identities=6% Similarity=-0.021 Sum_probs=26.3
Q ss_pred cchhHHhHHHHHHHHHHHH-HhCCCCeEEEEeec
Q 038167 56 EGAGHRAGFLTLMSLLKYC-AELSVKYVSIYAFS 88 (292)
Q Consensus 56 ~~~Gh~~G~~~l~~ii~wc-~~~GI~~vSvYafS 88 (292)
...|.-.|..-+..++.|+ .+.|++.|.+...+
T Consensus 106 ~~rg~Gig~~ll~~~~~~a~~~~g~~~i~~~v~~ 139 (184)
T 3igr_A 106 EYQGKGIMRRAVNVTIDWMFKAQNLHRIMAAYIP 139 (184)
T ss_dssp GGTTSSHHHHHHHHHHHHHHHTSCCSEEEEEECT
T ss_pred hhccCcHHHHHHHHHHHHHHhhCCceEEEEEecC
Confidence 3445555788899999999 67899999998765
No 91
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=21.78 E-value=3.6e+02 Score=22.71 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=31.2
Q ss_pred EEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHH
Q 038167 37 IAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYL 102 (292)
Q Consensus 37 IaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~L 102 (292)
|||||.+. + ....+.+....+.++||++ -+..-| -.|.++++..+
T Consensus 25 V~IimGS~---------S--------D~~v~~~a~~~L~~~gI~~-e~~V~S---AHRtp~~l~~~ 69 (181)
T 4b4k_A 25 VGVIMGST---------S--------DWETMKYACDILDELNIPY-EKKVVS---AHRTPDYMFEY 69 (181)
T ss_dssp EEEEESSG---------G--------GHHHHHHHHHHHHHTTCCE-EEEECC---TTTSHHHHHHH
T ss_pred EEEEECCH---------h--------HHHHHHHHHHHHHHcCCCe-eEEEEc---cccChHHHHHH
Confidence 99999973 1 3567778888889999995 233333 45888865433
No 92
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=21.78 E-value=3.2e+02 Score=22.79 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=32.9
Q ss_pred EEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHH
Q 038167 36 HIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLM 103 (292)
Q Consensus 36 HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm 103 (292)
.|+|||.+. + ....+.+....+.++||++ ..-.---.|.++++..+.
T Consensus 8 ~V~IimgS~---------S--------D~~v~~~a~~~l~~~gi~~----ev~V~SaHR~p~~~~~~~ 54 (169)
T 3trh_A 8 FVAILMGSD---------S--------DLSTMETAFTELKSLGIPF----EAHILSAHRTPKETVEFV 54 (169)
T ss_dssp EEEEEESCG---------G--------GHHHHHHHHHHHHHTTCCE----EEEECCTTTSHHHHHHHH
T ss_pred cEEEEECcH---------H--------hHHHHHHHHHHHHHcCCCE----EEEEEcccCCHHHHHHHH
Confidence 699999983 1 3466777888888999995 332233578888766554
No 93
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=21.58 E-value=2.4e+02 Score=23.47 Aligned_cols=41 Identities=12% Similarity=-0.008 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHH
Q 038167 64 FLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMD 104 (292)
Q Consensus 64 ~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~ 104 (292)
.....+.+..+.+.|++.|.+=++|+.++.=|++++..+|-
T Consensus 115 ~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~ 155 (193)
T 2xd7_A 115 EETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTL 155 (193)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHH
Confidence 34455666667788999999999999999999999887764
No 94
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=21.31 E-value=2.4e+02 Score=23.42 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=44.2
Q ss_pred EEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 038167 36 HIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLR 115 (292)
Q Consensus 36 HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~ 115 (292)
.|+|||.+. + ....+.+....+.++||+ |+.-.---.|.++++..+.+-
T Consensus 5 ~V~Iimgs~---------S--------D~~v~~~a~~~l~~~gi~----~ev~V~SaHR~p~~~~~~~~~---------- 53 (163)
T 3ors_A 5 KVAVIMGSS---------S--------DWKIMQESCNMLDYFEIP----YEKQVVSAHRTPKMMVQFASE---------- 53 (163)
T ss_dssp CEEEEESCG---------G--------GHHHHHHHHHHHHHTTCC----EEEEECCTTTSHHHHHHHHHH----------
T ss_pred eEEEEECcH---------H--------HHHHHHHHHHHHHHcCCC----EEEEEECCcCCHHHHHHHHHH----------
Confidence 499999973 1 346677888888999999 444334467988876555321
Q ss_pred hccccccCC--cEEEEecCCCCCCHH
Q 038167 116 EDGFLSKYG--VRVCFIGNLGLVSEP 139 (292)
Q Consensus 116 ~~~~~~~~~--irv~~iGd~~~lp~~ 139 (292)
...+| +=|-+-|--.-||--
T Consensus 54 ----a~~~g~~ViIa~AG~aa~Lpgv 75 (163)
T 3ors_A 54 ----ARERGINIIIAGAGGAAHLPGM 75 (163)
T ss_dssp ----TTTTTCCEEEEEEESSCCHHHH
T ss_pred ----HHhCCCcEEEEECCchhhhHHH
Confidence 12233 445555666777753
No 95
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=21.29 E-value=2e+02 Score=24.11 Aligned_cols=69 Identities=10% Similarity=0.166 Sum_probs=43.8
Q ss_pred EEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 038167 36 HIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLR 115 (292)
Q Consensus 36 HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~ 115 (292)
-|+|||.+. + ....+.+....+.++||++ ..-.---.|.++++..+.+..
T Consensus 14 ~V~IimGS~---------S--------D~~v~~~a~~~l~~~gi~~----ev~V~saHR~p~~l~~~~~~a--------- 63 (173)
T 4grd_A 14 LVGVLMGSS---------S--------DWDVMKHAVAILQEFGVPY----EAKVVSAHRMPDEMFDYAEKA--------- 63 (173)
T ss_dssp SEEEEESSG---------G--------GHHHHHHHHHHHHHTTCCE----EEEECCTTTSHHHHHHHHHHH---------
T ss_pred eEEEEeCcH---------h--------HHHHHHHHHHHHHHcCCCE----EEEEEccccCHHHHHHHHHHH---------
Confidence 599999983 2 4566777888888999994 333334568888665443221
Q ss_pred hccccccCCc--EEEEecCCCCCCHH
Q 038167 116 EDGFLSKYGV--RVCFIGNLGLVSEP 139 (292)
Q Consensus 116 ~~~~~~~~~i--rv~~iGd~~~lp~~ 139 (292)
..+|+ =|-+-|--.-||--
T Consensus 64 -----~~~g~~ViIa~AG~aahLpgv 84 (173)
T 4grd_A 64 -----RERGLRAIIAGAGGAAHLPGM 84 (173)
T ss_dssp -----TTTTCSEEEEEEESSCCHHHH
T ss_pred -----HhcCCeEEEEeccccccchhh
Confidence 12344 45556776777754
No 96
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=21.20 E-value=2.4e+02 Score=24.26 Aligned_cols=61 Identities=8% Similarity=0.038 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccccCCcEEEEe
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFI 130 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~irv~~i 130 (292)
.....+.+.+.++.|.++|++.|.++.-+.. .++.+ .-++.+.+.+++++.. . +|+++-+=
T Consensus 89 r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~--~~~~~---~~~~~~~~~l~~l~~~----a-~gv~l~lE 149 (303)
T 3aal_A 89 FSLGVDFLRAEIERTEAIGAKQLVLHPGAHV--GAGVE---AGLRQIIRGLNEVLTR----E-QNVQIALE 149 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEECCEECT--TSCHH---HHHHHHHHHHHHHCCS----S-CSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCcCC--CCCHH---HHHHHHHHHHHHHHHh----C-CCCEEEEe
Confidence 4567889999999999999999988654321 22333 3445566677776542 2 67877553
No 97
>3tcv_A GCN5-related N-acetyltransferase; GRAM negative coccobacillus, brucellosis, acyl CO-A, arylami transferase; 1.75A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=21.13 E-value=1.9e+02 Score=24.13 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=28.5
Q ss_pred cchhHHhHHHHHHHHHHHHHh-CCCCeEEEEeeccCC
Q 038167 56 EGAGHRAGFLTLMSLLKYCAE-LSVKYVSIYAFSIDN 91 (292)
Q Consensus 56 ~~~Gh~~G~~~l~~ii~wc~~-~GI~~vSvYafS~eN 91 (292)
...|.-.|.+.+..++.||.+ +|+..|.+..++ +|
T Consensus 137 ~~rgkGig~~ll~~ll~~a~~~~g~~~i~l~v~~-~N 172 (246)
T 3tcv_A 137 LISRRPAATEAQFLFMQYVFDVLGYRRYEWECHN-EN 172 (246)
T ss_dssp TTTTSHHHHHHHHHHHHHHHHTSCCSEEEEEEET-TC
T ss_pred HHcCCCHHHHHHHHHHHHHHHhcCcEEEEEEccC-CC
Confidence 455666688889999999988 699999999865 45
No 98
>3r9f_A MCCE protein; microcin C7, acetyltransferase, SELF immunity, resistance, A coenzyme A, transferase; HET: COA GSU; 1.20A {Escherichia coli} PDB: 3r95_A* 3r96_A* 3r9e_A* 3r9g_A*
Probab=20.95 E-value=1.5e+02 Score=22.73 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=27.2
Q ss_pred cchhHHhHHHHHHHHHHHHHhC-CCCeEEEEeeccCC
Q 038167 56 EGAGHRAGFLTLMSLLKYCAEL-SVKYVSIYAFSIDN 91 (292)
Q Consensus 56 ~~~Gh~~G~~~l~~ii~wc~~~-GI~~vSvYafS~eN 91 (292)
...|.-.|.+.+..++.||.+. |++.|.+...+ +|
T Consensus 114 ~~~g~Gig~~ll~~~~~~a~~~~~~~~i~~~v~~-~N 149 (188)
T 3r9f_A 114 NFQGKGIVTNAINKLIQEYGDSGVIKRFVIKCIV-DN 149 (188)
T ss_dssp GGTTSSHHHHHHHHHHHHHHTTTSCSEEEEEEET-TC
T ss_pred hhcCCCHHHHHHHHHHHHHHHhcCeEEEEEEecC-CC
Confidence 4445555788899999999876 99999998865 45
No 99
>2i79_A Acetyltransferase, GNAT family; acetyl coenzyme *A, structur genomics, PSI-2, protein structure initiative; HET: ACO; 2.10A {Streptococcus pneumoniae}
Probab=20.70 E-value=1.4e+02 Score=22.64 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=27.9
Q ss_pred cchhHHhHHHHHHHHHHHHHhCC-CCeEEEEeeccCC
Q 038167 56 EGAGHRAGFLTLMSLLKYCAELS-VKYVSIYAFSIDN 91 (292)
Q Consensus 56 ~~~Gh~~G~~~l~~ii~wc~~~G-I~~vSvYafS~eN 91 (292)
...|.-.|-+-+..++.||.+.| ++.|.+..++ +|
T Consensus 97 ~~~g~Gig~~ll~~~~~~a~~~~~~~~i~l~v~~-~N 132 (172)
T 2i79_A 97 RYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQT-RN 132 (172)
T ss_dssp GGTTSSHHHHHHHHHHHHHHHTSSCCEEEEEEET-TC
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCeEEEEEEEEC-CC
Confidence 34455557888999999999998 9999999875 45
No 100
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=20.39 E-value=3.8e+02 Score=22.47 Aligned_cols=26 Identities=4% Similarity=0.028 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHHHHhCCCCeEEEEe
Q 038167 61 RAGFLTLMSLLKYCAELSVKYVSIYA 86 (292)
Q Consensus 61 ~~G~~~l~~ii~wc~~~GI~~vSvYa 86 (292)
....+.+.+.++.|.++|++.|.+..
T Consensus 86 ~~~~~~~~~~i~~a~~lG~~~v~~~~ 111 (301)
T 3cny_A 86 EKASEAFEKHCQYLKAINAPVAVVSE 111 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecC
Confidence 45678899999999999999999875
No 101
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=20.33 E-value=2.5e+02 Score=23.48 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=32.7
Q ss_pred EEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHH
Q 038167 36 HIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYL 102 (292)
Q Consensus 36 HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~L 102 (292)
.|+|||.+. + ....+.+....+.++||+ |+.-.----|.++++..+
T Consensus 13 ~V~IimGS~---------S--------D~~v~~~a~~~L~~~Gi~----~dv~V~SaHR~p~~l~~~ 58 (170)
T 1xmp_A 13 LVGVIMGST---------S--------DWETMKYACDILDELNIP----YEKKVVSAHRTPDYMFEY 58 (170)
T ss_dssp SEEEEESSG---------G--------GHHHHHHHHHHHHHTTCC----EEEEECCTTTSHHHHHHH
T ss_pred cEEEEECcH---------H--------HHHHHHHHHHHHHHcCCC----EEEEEEeccCCHHHHHHH
Confidence 599999983 1 456677788888899999 444334457888876544
No 102
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=20.30 E-value=2.7e+02 Score=23.30 Aligned_cols=56 Identities=20% Similarity=0.055 Sum_probs=36.6
Q ss_pred HHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHHHHHhhhccccc-cCCcEEEEe
Q 038167 60 HRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLS-KYGVRVCFI 130 (292)
Q Consensus 60 h~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~-~~~irv~~i 130 (292)
.....+.+.+.++.|.++|++.|.+..-+. .+ +.+.+.+++++.. .. ++|+++-+=
T Consensus 83 r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~-----~~-------~~~~~~l~~l~~~---a~~~~gv~l~lE 139 (270)
T 3aam_A 83 WEKSVASLADDLEKAALLGVEYVVVHPGSG-----RP-------ERVKEGALKALRL---AGVRSRPVLLVE 139 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCCBS-----CH-------HHHHHHHHHHHHH---HTCCSSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCC-----CH-------HHHHHHHHHHHHh---hcccCCCEEEEe
Confidence 456788999999999999999998865332 22 3334445544432 23 467877653
No 103
>1yre_A Hypothetical protein PA3270; APC5563, midwest center for structural genomics, MSC protein structure initiative, PSI, MCSG; HET: COA; 2.15A {Pseudomonas aeruginosa} SCOP: d.108.1.1
Probab=20.25 E-value=1.8e+02 Score=22.38 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=26.4
Q ss_pred cchhHHhHHHHHHHHHHHHHh-CCCCeEEEEeec
Q 038167 56 EGAGHRAGFLTLMSLLKYCAE-LSVKYVSIYAFS 88 (292)
Q Consensus 56 ~~~Gh~~G~~~l~~ii~wc~~-~GI~~vSvYafS 88 (292)
...|.-.|-.-+..++.|+.+ .|++.|.+....
T Consensus 107 ~~rg~Gig~~ll~~~~~~a~~~~g~~~i~~~v~~ 140 (197)
T 1yre_A 107 AQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAA 140 (197)
T ss_dssp GGTTTTHHHHHHHHHHHHHHHTSCCSEEEEEEET
T ss_pred hHhcCCHHHHHHHHHHHHHHhhcCccEEEEEEcC
Confidence 444555577889999999999 899999998764
No 104
>2fck_A Ribosomal-protein-serine acetyltransferase, putat; ribosomal-protein structural genomics, PSI, protein structure initiative; HET: MSE; 1.70A {Vibrio cholerae o1 biovar eltor} SCOP: d.108.1.1
Probab=20.13 E-value=1.3e+02 Score=22.52 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=25.3
Q ss_pred chhHHhHHHHHHHHHHHHHh-CCCCeEEEEeec
Q 038167 57 GAGHRAGFLTLMSLLKYCAE-LSVKYVSIYAFS 88 (292)
Q Consensus 57 ~~Gh~~G~~~l~~ii~wc~~-~GI~~vSvYafS 88 (292)
..|.-.|..-+..++.|+.+ +|++.|.+...+
T Consensus 109 ~rg~Gig~~ll~~~~~~a~~~~g~~~i~~~~~~ 141 (181)
T 2fck_A 109 YQRQGYGKEALTALILFCFERLELTRLEIVCDP 141 (181)
T ss_dssp HHTTTHHHHHHHHHHHHHHHTSCCSEEEEEECT
T ss_pred hcCCChHHHHHHHHHHHHHHhcCceEEEEEEcc
Confidence 34444577889999999999 599999998754
No 105
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=20.09 E-value=1.1e+02 Score=28.03 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=39.2
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCeEEEEeecc-CC--CCCCHHHHHHHHHHHHHHHHHHhhhccccccCC--cEEEE
Q 038167 59 GHRAGFLTLMSLLKYCAELSVKYVSIYAFSI-DN--FKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYG--VRVCF 129 (292)
Q Consensus 59 Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~-eN--~~R~~~Ev~~Lm~l~~~~l~~l~~~~~~~~~~~--irv~~ 129 (292)
-....++.+.+.++.|.++|++.|.++.-+. .+ ...+.+ .-++.+.+.+++++.. ..++| +++-+
T Consensus 110 ~r~~~i~~~~~~i~~A~~LGa~~vvv~~G~~g~~~~~~~~~~---~~~~~~~e~L~~l~~~---A~~~G~~v~l~l 179 (394)
T 1xla_A 110 IRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLA---AALDRMREGVDTAAGY---IKDKGYNLRIAL 179 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEECCTTCEESSGGGCCHH---HHHHHHHHHHHHHHHH---HHHHTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEECCCCCccccccccCHH---HHHHHHHHHHHHHHHH---HHhcCCCeEEEE
Confidence 3466788999999999999999999864221 00 122322 2334445555555432 23456 77644
Done!