RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 038167
(292 letters)
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 246 bits (630), Expect = 5e-82
Identities = 93/242 (38%), Positives = 131/242 (54%), Gaps = 26/242 (10%)
Query: 40 ILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEI 99
I+DGNRR+AKK L GHRAG + +L++C EL +KY+++YAFS +N+KR + E+
Sbjct: 1 IMDGNRRWAKKRGLP-RTEGHRAGAEAVREILEWCLELGIKYLTLYAFSTENWKRPKEEV 59
Query: 100 RYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVI 159
+LM+L+ K+ R L K GVRV IG+L L+ E +R E AT NT + +
Sbjct: 60 DFLMELLERKLR---RLLEDLHKNGVRVRVIGDLSLLPEDLRKAIEDAEEATKNNTGLTL 116
Query: 160 LICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDL 219
I L Y +EIV V+ + P D+ E+ +
Sbjct: 117 NIALNYGGRDEIVDAVKRLA---RDVADGKLSP----EDIDEEV---------------I 154
Query: 220 EKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQ 279
EK++Y P+PD+LIRTSGE RLSNFLLWQS+ LY LWP+ L+ AI ++Q
Sbjct: 155 EKYLYTSDLPDPDLLIRTSGEKRLSNFLLWQSAYAELYFTDTLWPDFTKEDLLRAIRDYQ 214
Query: 280 RH 281
Sbjct: 215 SR 216
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
metabolism].
Length = 245
Score = 206 bits (527), Expect = 3e-66
Identities = 92/248 (37%), Positives = 133/248 (53%), Gaps = 26/248 (10%)
Query: 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92
+P H+A I+DGNRR+AKK L GH+AG L +L++C EL +KY+++YAFS +N+
Sbjct: 16 LPRHVAIIMDGNRRWAKKRGLPRI-EGHKAGAKALREILEWCLELGIKYLTLYAFSTENW 74
Query: 93 KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
KR + E+ +LM+L + L E L K GVR+ IG+L + E +R EK T
Sbjct: 75 KRPKEEVSFLMELF---EKALREELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTK 131
Query: 153 KNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN 212
NT + + I + Y +EIV V + + A + E
Sbjct: 132 NNTGLTLNIAVNYGGRDEIVDAVRKI--------------------AEDVAAGKLSPEDI 171
Query: 213 TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLI 272
+L + H+Y P+PD+LIRTSGE RLSNFLLWQS+ LY LWP+ L+
Sbjct: 172 DEEL--ISSHLYTSGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRREDLL 229
Query: 273 WAILNFQR 280
AI ++Q+
Sbjct: 230 RAIRDYQK 237
>gnl|CDD|238265 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases
(cis-IPPS); homodimers which catalyze the successive
1'-4 condensation of the isopentenyl diphosphate (IPP)
molecule to trans,trans-farnesyl diphosphate (FPP) or to
cis,trans-FPP to form long-chain polyprenyl
diphosphates. A few can also catalyze the condensation
of IPP to trans-geranyl diphosphate to form the
short-chain cis,trans- FPP. In prokaryotes, the
cis-IPPS, undecaprenyl diphosphate synthase (UPP
synthase) catalyzes the formation of the carrier lipid
UPP in bacterial cell wall peptidooglycan biosynthesis.
Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl
diphosphate (dedol-PP) synthase catalyzes the formation
of the polyisoprenoid glycosyl carrier lipid dolichyl
monophosphate. cis-IPPS are mechanistically and
structurally distinct from trans-IPPS, lacking the DDXXD
motifs, yet requiring Mg2+ for activity.
Length = 221
Score = 205 bits (524), Expect = 5e-66
Identities = 93/247 (37%), Positives = 136/247 (55%), Gaps = 26/247 (10%)
Query: 34 PNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFK 93
P H+AFI+DGNRR+AK+ + GH+AG L +L++C EL VK V++YAFS +N+K
Sbjct: 1 PKHVAFIMDGNRRWAKQRGMD-RIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWK 59
Query: 94 RTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSK 153
R + E+ +LM+L + + +L+E L K GVR+ IG+L L+ E ++ +K AT
Sbjct: 60 RPKEEVDFLMELFRDVLRRILKE---LEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKN 116
Query: 154 NTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNT 213
NT + + Y +EI+H V E E K ++
Sbjct: 117 NTGFTLNVAFNYGGRQEIIHAVREI---------------------AEKVKAGKLTPEDI 155
Query: 214 IKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIW 273
+ L KH+Y P+PD+LIRTSGE RLSNFLLWQS+ LY LWP+ +
Sbjct: 156 DEST-LNKHLYTHDSPDPDLLIRTSGEQRLSNFLLWQSAYSELYFSDVLWPDFTFWDFLR 214
Query: 274 AILNFQR 280
A+L++QR
Sbjct: 215 ALLDYQR 221
>gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase. This enzyme
builds undecaprenyl diphosphate, a molecule that in
bacteria is used a carrier in synthesizing cell wall
components. Alternate name: undecaprenyl pyrophosphate
synthetase. Activity has been demonstrated
experimentally for members of this family from
Micrococcus luteus, E. coli, Haemophilus influenzae, and
Streptococcus pneumoniae [Cell envelope, Biosynthesis
and degradation of surface polysaccharides and
lipopolysaccharides].
Length = 226
Score = 192 bits (489), Expect = 9e-61
Identities = 91/247 (36%), Positives = 128/247 (51%), Gaps = 26/247 (10%)
Query: 36 HIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRT 95
H+A I+DGN R+AKK GH+AG +L +L++CA L V+ +++YAFS +N+KR
Sbjct: 2 HVAIIMDGNGRWAKKKGKP-RAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRP 60
Query: 96 QNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNT 155
+ E+ +LM+L +K L RE L +Y VR+ IG+L L+S+ ++ +K T NT
Sbjct: 61 KEEVDFLMELFEKK---LDREVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNT 117
Query: 156 RIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIK 215
+ I Y EI+H V++ E K I
Sbjct: 118 DFTLNIAFNYGGRNEILHAVKQI---------------------AEKVKSGKL-LPEDID 155
Query: 216 LVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAI 275
L KH+Y P D+LIRTSGE R+SNFLLWQSS LY LWP+ + AI
Sbjct: 156 EETLNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAI 215
Query: 276 LNFQRHH 282
L+FQ H
Sbjct: 216 LDFQFRH 222
>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 251
Score = 171 bits (435), Expect = 2e-52
Identities = 89/250 (35%), Positives = 129/250 (51%), Gaps = 26/250 (10%)
Query: 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92
IP HIA I+DGN R+AKK L AGH+AG T+ + K +EL VK +++YAFS +N+
Sbjct: 22 IPKHIAIIMDGNGRWAKKRMLP-RIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENW 80
Query: 93 KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
KR ++E+++LM+L +EFL + L + V+V IG+ + E EK + T
Sbjct: 81 KRPKDEVKFLMNLP---VEFLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTK 137
Query: 153 KNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN 212
NT +++ L Y EIV V+E K P D+TE+
Sbjct: 138 NNTGLILNFALNYGGRAEIVSAVKEIA---KDVLDGKLNP----EDITEE---------- 180
Query: 213 TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLI 272
+ ++ P+PD+LIRTSGE RLSNFLLWQ + Y LWP+ L+
Sbjct: 181 -----LISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELL 235
Query: 273 WAILNFQRHH 282
AI ++Q
Sbjct: 236 KAIKDYQSRQ 245
>gnl|CDD|237831 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 253
Score = 149 bits (379), Expect = 7e-44
Identities = 75/241 (31%), Positives = 121/241 (50%), Gaps = 26/241 (10%)
Query: 27 ILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYA 86
I + IP HIA I+DGN R+AK+ GHRAG + +++C E ++ ++++A
Sbjct: 8 IPANENIPRHIAIIMDGNGRWAKRRGKP-RVEGHRAGVRAVRRTIEFCLEKGIEMLTLFA 66
Query: 87 FSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEK 146
FS +N+ R +E+ LM+L L+ ++ RE L + G+RV FIG+ +S ++ E
Sbjct: 67 FSSENWLRPADEVSALMELFLKALD---REVDKLHRNGIRVRFIGDRSRLSPKLQERMEY 123
Query: 147 VMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEH 206
R T+ NTR+++ + ++Y +IV + + +
Sbjct: 124 AERLTASNTRLILSLAVSYGGRWDIVT-------AARA--------------LAREVAAG 162
Query: 207 KNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEI 266
K I L +H+ + P PD+ IRTSGE R+SNFLLWQ + LY LWP+
Sbjct: 163 KLAPDE-IDEALLAQHLALADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDF 221
Query: 267 G 267
Sbjct: 222 D 222
>gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 249
Score = 146 bits (371), Expect = 9e-43
Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 26/250 (10%)
Query: 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92
+P H+A I+DGN R+AK+ L GHR G L LL+ C + + ++ YAFS +N+
Sbjct: 20 LPKHVAVIMDGNGRWAKRRGLP-RIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENW 78
Query: 93 KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
R E+ +LM L E++ L RE L + VR+ F+G+L + + ++ + T
Sbjct: 79 SRPLEEVNFLMTL-FERV--LRRELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTK 135
Query: 153 KNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN 212
N I +C Y +EIV + ++ Q P + DE+
Sbjct: 136 NNNGIHFNVCTNYGGRQEIVQAARA---IAQQVQQGELDP--------SEIDENL----- 179
Query: 213 TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLI 272
E +Y +PD+LIRTSGE R+SNFLLWQ + +Y LWP+
Sbjct: 180 ------FESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFH 233
Query: 273 WAILNFQRHH 282
A+L++Q
Sbjct: 234 KALLDYQSRE 243
>gnl|CDD|237827 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 253
Score = 138 bits (349), Expect = 2e-39
Identities = 86/248 (34%), Positives = 126/248 (50%), Gaps = 26/248 (10%)
Query: 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92
IP HIA I+DGN R+A L AGHR G TL LL+ C + +K ++ YAFS +N+
Sbjct: 18 IPQHIAVIMDGNGRWATSQGLP-RIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENW 76
Query: 93 KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
+R E+ +LM L+ E++ L RE + + GVR+ FIG+L + + ++ E+ M T
Sbjct: 77 QRPIEEVDFLM-LLFERL--LRRELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETL 133
Query: 153 KNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN 212
N I + + Y S EI + V + Q + V E
Sbjct: 134 NNQAIHFTVAVNYGSRNEITRACRQ---VAELVQQGKLSA----DAVNEQL--------- 177
Query: 213 TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLI 272
+E+H+Y P PD+LIRTSGE RLSNFLLWQ + +Y LWP+
Sbjct: 178 ------VEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFH 231
Query: 273 WAILNFQR 280
A+L++Q+
Sbjct: 232 QALLSYQK 239
>gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 242
Score = 135 bits (341), Expect = 2e-38
Identities = 81/260 (31%), Positives = 133/260 (51%), Gaps = 28/260 (10%)
Query: 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92
IP HIA I+DGN R+AK+ GH+AG T+ + + A L VK++++Y FS +N+
Sbjct: 10 IPQHIAIIMDGNGRWAKERGKE-RSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENW 68
Query: 93 KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
R +E+ LM L+L+ +E E+ F+ K +R IG++ + E ++ + T+
Sbjct: 69 NRPSDEVAALMSLLLDSIE----EETFM-KNNIRFRIIGDIAKLPEEVQERLNECEEHTA 123
Query: 153 KNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN 212
KNT + +++ L+YSS EI + + Q P ++TE++
Sbjct: 124 KNTGMCLVLALSYSSRWEITEATRQ---IATLVQNGELNP----EEITEES--------- 167
Query: 213 TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLI 272
+ +H+ P+PD+LIRT GE RLSN+LLWQ + LY WP+ L
Sbjct: 168 ------ISEHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELC 221
Query: 273 WAILNFQRHHAYLEKKKKQL 292
AI ++Q+ K +Q+
Sbjct: 222 KAIYDYQKRERRFGKTSEQI 241
>gnl|CDD|237825 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 256
Score = 134 bits (338), Expect = 7e-38
Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 34/272 (12%)
Query: 18 VFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAEL 77
V+ R+ + G L +P H+ I+DGNRR+A+K GHRAG + L +C E
Sbjct: 12 VYARR-LLGELDGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDET 70
Query: 78 SVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVS 137
V V++Y S DN R E+ L+D++ + + L + + RV +G+L L+
Sbjct: 71 DVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVRQLAPDGRW------RVRHVGSLDLLP 124
Query: 138 EPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQN 197
P ++ AT N I + + + Y +EIV V ++
Sbjct: 125 APSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAV--------------------RS 164
Query: 198 DVTEDADEHKNKEQ--NTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCM 255
+TE D+ + ++ ++ + + H+Y G P+PD++IRTSGE RLS F+LWQS++
Sbjct: 165 LLTEHKDKGTSIDELAESVTVDAISTHLYTGGQPDPDLVIRTSGEQRLSGFMLWQSAHSE 224
Query: 256 LYSPAALWPEIGLRHL--IWAILNF-QRHHAY 284
Y WP R + + A+ ++ QR +
Sbjct: 225 YYFCETYWPA--FRKVDFLRALRDYSQRERRF 254
>gnl|CDD|237829 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 249
Score = 132 bits (334), Expect = 3e-37
Identities = 75/250 (30%), Positives = 116/250 (46%), Gaps = 26/250 (10%)
Query: 31 GVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSID 90
+P H+A I+DGN R+AK L AGHRAG L +++ EL + Y++++AFS +
Sbjct: 12 MSVPRHVAIIMDGNGRWAKARGLP-RAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSE 70
Query: 91 NFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRA 150
N+ R +E+ L L+ F+ R+ L + GVRV IG + I +
Sbjct: 71 NWSRPASEVSDLFGLL---RLFIRRDLAELHRNGVRVRVIGERAGLEADICALLNEAEEL 127
Query: 151 TSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKE 210
T NT + ++I Y S +EI V + + E + +
Sbjct: 128 TRNNTGLNLVIAFNYGSRDEIARAVRR---------------------LAREVAEGR-LD 165
Query: 211 QNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRH 270
+I + ++ P+PD++IRTSGE RLSNFLLWQ++ L WP+
Sbjct: 166 PASIDAETISANLDTADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAA 225
Query: 271 LIWAILNFQR 280
L AI + R
Sbjct: 226 LEAAIEEYAR 235
>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 241
Score = 132 bits (332), Expect = 3e-37
Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 25/247 (10%)
Query: 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92
IP HIA I+DGN R+A+ GHR G + L+ E +K +S+YAFS +N+
Sbjct: 8 IPAHIAVIMDGNGRWAESQG-KKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENW 66
Query: 93 KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
KR EIR + L++E +E L + G+R+ G+ ++ + + M T
Sbjct: 67 KRPITEIRSIFGLLVEFIETRLDT---IHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTK 123
Query: 153 KNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN 212
KN + + CL Y S +E++ +E L K + KP +
Sbjct: 124 KNKNLTVNFCLNYGSHDELLRAAQEVFLARKAKKVTLEKPLKEK---------------- 167
Query: 213 TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLI 272
+ EK +Y P D+LIRT+GE RLSNFLLWQS+ LY LWP+ L+
Sbjct: 168 -----EFEKFLYTSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLV 222
Query: 273 WAILNFQ 279
++ ++
Sbjct: 223 DSLKWYE 229
>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 233
Score = 131 bits (331), Expect = 4e-37
Identities = 80/248 (32%), Positives = 128/248 (51%), Gaps = 28/248 (11%)
Query: 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92
IP H+A I+DGN R+AKK L GH+ G L + +K+ EL +KY++ ++FS +N+
Sbjct: 3 IPQHVAIIMDGNGRWAKKRGLP-RIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENW 61
Query: 93 KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
KR + E+ +LMDL ++ ++ RE L + VRV +G + E + ++V T
Sbjct: 62 KRPKEEVEFLMDLFVQMID---REMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTK 118
Query: 153 KNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN 212
+ R+ ++I Y EI+ VE + +D + K E
Sbjct: 119 EFDRMTLVIAFNYGGRREILDAVES---------------------ILKDVSQGKKIELT 157
Query: 213 TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLI 272
+++Y+ P+PD++IRTSGE RLSNFLLWQS+ LY LWP+ R +
Sbjct: 158 E---ETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFL 214
Query: 273 WAILNFQR 280
AI ++ +
Sbjct: 215 RAIESYSK 222
>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 275
Score = 131 bits (330), Expect = 1e-36
Identities = 77/249 (30%), Positives = 114/249 (45%), Gaps = 20/249 (8%)
Query: 31 GVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSID 90
G +P H+ ILDGNRRFA+ L E GH G +L++C EL + V+I+ FS D
Sbjct: 39 GKLPRHLGLILDGNRRFARALGLQRE-MGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTD 97
Query: 91 NFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRA 150
NF R+ E+ LM+L + + D + VRV IG + E++
Sbjct: 98 NFSRSPAEVETLMNLFEREAR-RMAVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEER 156
Query: 151 TSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKE 210
T + +++ I + Y EEIV V+ L A ++P+ E
Sbjct: 157 TEGHEGMLLNIAVGYGGREEIVDAVKSLLLE------AAATGKSPEEVAAE--------- 201
Query: 211 QNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRH 270
+ + H+Y P+PD +IRTSGE RLS FLLWQS+ Y WP
Sbjct: 202 ---LTPEHISAHLYTAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVD 258
Query: 271 LIWAILNFQ 279
+ A+ ++Q
Sbjct: 259 FLRALRDYQ 267
>gnl|CDD|237826 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 243
Score = 129 bits (327), Expect = 2e-36
Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 28/249 (11%)
Query: 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92
+P HIA ++DGN R+A + L GH+AG L ++ E V Y+S+Y FS +N+
Sbjct: 14 LPRHIAVVMDGNGRWATQRGLK-RTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENW 72
Query: 93 KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
KR+ +E+R+LM + + R + ++GVRV + G + + + E T
Sbjct: 73 KRSPDEVRFLMGF---SRDVIHRRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTK 129
Query: 153 KNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN 212
NT + ++ C+ Y EI + ++ + VTE
Sbjct: 130 NNTTMDLVFCVNYGGRAEIADAAAA---IAREVRDGKISGD----RVTEKM--------- 173
Query: 213 TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNC-MLYSPAALWPEIGLRHL 271
+ H+Y P+ D+ +RTSGE R SNFLLWQS+ + + P L+P+ G L
Sbjct: 174 ------ISDHLYNPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVP-KLFPDFGRDDL 226
Query: 272 IWAILNFQR 280
AI +
Sbjct: 227 WAAIDEYAH 235
>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 233
Score = 125 bits (316), Expect = 7e-35
Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 27/247 (10%)
Query: 34 PNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFK 93
H+A I+DGN R+AK A AGH+ G TL + +CA ++ +++YAFS +N+K
Sbjct: 5 LKHLAIIMDGNGRWAKLRGKA-RAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWK 63
Query: 94 RTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSK 153
R ++E+ +LM +L+K +L E + +R IG+L S+ +R T ++ T
Sbjct: 64 RPKSEVDFLMK-LLKK--YLKDERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRS 120
Query: 154 NTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNT 213
++ L Y S +EI ++ + +
Sbjct: 121 FKGFTQVLALNYGSKDEISRAFKKL------------------LESPPSHIGELESLEEE 162
Query: 214 IKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIW 273
I + P D+LIRT GE RLSNFLLWQSS L+ LWP+ + L
Sbjct: 163 I-----SNCLDTADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLEN 217
Query: 274 AILNFQR 280
I +F +
Sbjct: 218 IISDFYK 224
>gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 250
Score = 117 bits (295), Expect = 1e-31
Identities = 71/257 (27%), Positives = 129/257 (50%), Gaps = 32/257 (12%)
Query: 28 LSVGVIPNHIAFILDGNRRFAKKHNL---AGEGAGHRAGFLTLMSLLKYCAELSVKYVSI 84
S+ +P H+A I+DGNRR+ +KH +GH G +L ++ L ++ +++
Sbjct: 13 PSLQSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTL 72
Query: 85 YAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTA 144
+AFS +NF R++ E+ L L +++ L +L + +R+ IG+L + + ++
Sbjct: 73 FAFSTENFSRSKEEVAELFSLFNSQLDSQL---PYLHENEIRLRCIGDLSKLPQELQNNI 129
Query: 145 EKVMRATSKNTRIVILICLAYSSTEEIVHTVEE--TCLVTKKTQPQAFKPRNPQNDVTED 202
E+ AT+ +R+ +++ + Y +E+V ++ L KK +D++E+
Sbjct: 130 EQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQDLANKKIS---------SDDISEE 180
Query: 203 ADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAAL 262
L+ ++ P+PD+LIRT GE R+SNFLLWQ + LY L
Sbjct: 181 -------------LISS--YLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVL 225
Query: 263 WPEIGLRHLIWAILNFQ 279
WP+ L+ AI +Q
Sbjct: 226 WPDFTPNDLLEAIKTYQ 242
>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 296
Score = 111 bits (280), Expect = 5e-29
Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 27/242 (11%)
Query: 33 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92
+PNH+A ++DGN R+A + L GH+ G ++ + EL +K++S+YAFS +N+
Sbjct: 67 LPNHVAIVMDGNGRWATQRGL-ARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENW 125
Query: 93 KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
KR+ E+R+LM + + R L+K GVR+ ++G+ + + T
Sbjct: 126 KRSPEEVRFLMGF---NRDVVRRRRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTK 182
Query: 153 KNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN 212
N I I C+ Y EI E + A NP+ +TE
Sbjct: 183 SNDVITINYCVNYGGRTEITEATREI------AREAAAGRLNPER-ITEST--------- 226
Query: 213 TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLI 272
+ +H+ P+ D+ +RTSGE R SNF+LWQ++ LWP+ R L
Sbjct: 227 ------IARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDL- 279
Query: 273 WA 274
WA
Sbjct: 280 WA 281
>gnl|CDD|237832 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 239
Score = 107 bits (269), Expect = 7e-28
Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 35/245 (14%)
Query: 36 HIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRT 95
H+A I+DGN R+A L AGHRAG + +++ +L + +++YAFS DN++R
Sbjct: 12 HVAIIMDGNGRWATARGLP-RLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRP 70
Query: 96 QNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNT 155
E+ LM L+ +L E L++ GVR+ IG + + I + AT+
Sbjct: 71 AAEVGGLMRLL---RAYLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGD 127
Query: 156 RIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIK 215
R+ + I + YS+ + I+ A K P+ E +
Sbjct: 128 RLHLRIAVDYSARDAILAA--------------AAKALGPEGLSREAFSD---------- 163
Query: 216 LVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAI 275
+ G + D+LIRT GE RLS+FLLW+S+ L+ +WP+ G L A+
Sbjct: 164 -------LLTGDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAV 216
Query: 276 LNFQR 280
+F
Sbjct: 217 ADFHG 221
>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 230
Score = 101 bits (254), Expect = 7e-26
Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 30/243 (12%)
Query: 28 LSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAF 87
++ +P+H+ I+DGNRR+A K L+ GH+ G ++K+ +L +KY+S+Y F
Sbjct: 1 MNKNSLPSHVGIIMDGNRRWALKKGLSFF-EGHKEGLKRAKEIVKHSLKLGIKYLSLYVF 59
Query: 88 SIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKV 147
S +N+ RT +EI +LM L+ ++L E F K +++ G++ +SE ++ + +
Sbjct: 60 STENWNRTDSEIEHLMFLI---ADYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDA 116
Query: 148 MRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHK 207
+ T +V+ + + Y EIV V++ ++ D
Sbjct: 117 ISFTKNFDGLVLNLAINYGGRNEIVRAVKKF--------------------LSSGLDLET 156
Query: 208 NKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIG 267
E K +D + P+ D+LIRT G+ R+SNFLLW+ + C LWPE
Sbjct: 157 LNENVFSKFLDNPE------LPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYY 210
Query: 268 LRH 270
+ H
Sbjct: 211 VNH 213
>gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase;
Provisional.
Length = 322
Score = 101 bits (253), Expect = 5e-25
Identities = 79/287 (27%), Positives = 129/287 (44%), Gaps = 48/287 (16%)
Query: 36 HIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRT 95
HI+ I+DGNRRFAK+ L GH G L+ +++ C +L +K +S+++FS+ N+ R+
Sbjct: 22 HISIIMDGNRRFAKEKGLH-SAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRS 80
Query: 96 QNEIRYLMDLMLEKMEFLLRED---GFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
EI +L L L L+ ED F+ +++ IGNL +++ R + T
Sbjct: 81 PEEIHFLFYLNL---LILINEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTE 137
Query: 153 KNTRIVILICLAYSSTEEIV--------------HTVEET---CLVTKKTQPQAFKPRNP 195
I++ I +Y+S E+ + +EE C T P
Sbjct: 138 NFDNILLNIFFSYTSRNEMSLCKFNPNLYFDTYKNLLEEKKILCGSNILTDPIKEGTFAI 197
Query: 196 QNDVTE-DADEHKNKEQNT----------------------IKLVDLEKHMYMGVYPNPD 232
+D E D +H+ + + I++V+ K + P P+
Sbjct: 198 PDDEDECDYLDHELENERIDLDLKFDGDCICGEKSFLNEEQIEIVNYHKKLLTSDLPPPN 257
Query: 233 ILIRTSGENRLSNFLLWQSSN-CMLYSPAALWPEIGLRHLIWAILNF 278
ILIRTSGE RLS+F+L+Q S +Y WP I+ IL++
Sbjct: 258 ILIRTSGEKRLSDFMLYQISEFTEIYFINEYWPIFNFLQFIYIILHY 304
>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 229
Score = 89.7 bits (222), Expect = 2e-21
Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 26/225 (11%)
Query: 41 LDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIR 100
+DGN R+AKK GH+AG ++ + + A ++ +++YAFS +N+ R E+
Sbjct: 1 MDGNGRWAKKQGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVS 59
Query: 101 YLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVIL 160
LM+L + ++ E L ++ VR+ IG+ + ++ K T+ NT + +
Sbjct: 60 ALMELFVWALD---SEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLN 116
Query: 161 ICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLE 220
I Y +IV V + ++ Q +P + + E+ L
Sbjct: 117 IAANYGGRWDIVQGVR---QLAEQVQQGNLQP----DQIDEEM---------------LN 154
Query: 221 KHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPE 265
+H+ M D++IRT GE+R+SNFLLWQ + LY LWP+
Sbjct: 155 QHICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPD 199
>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional.
Length = 400
Score = 31.0 bits (70), Expect = 0.70
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 17/70 (24%)
Query: 120 LSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLA--------YSSTEEI 171
L++YGV V F+ L E+V A NT++V L A + I
Sbjct: 124 LTRYGVEVTFVDTSNL---------EEVRNALKANTKVVYLETPANPTLKVTDIKAISNI 174
Query: 172 VHTVEETCLV 181
H + CLV
Sbjct: 175 AHENNKECLV 184
>gnl|CDD|234246 TIGR03529, GldK_short, gliding motility-associated lipoprotein
GldK. Members of this protein family are exclusive to
the Bacteroidetes phylum (previously
Cytophaga-Flavobacteria-Bacteroides). GldK is a
lipoprotein linked to a type of rapid surface gliding
motility found in certain Bacteroidetes, such as
Flavobacterium johnsoniae. Knockouts of GldK abolish the
gliding phenotype. GldK is homologous to GldJ. This
model represents a GldK homolog in Cytophaga
hutchinsonii and several other species that has a
different, shorter architecture than that found in
Flavobacterium johnsoniae and related species
(represented by (TIGR03525). Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 344
Score = 28.7 bits (64), Expect = 3.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 80 KYVSIYAFSIDNFKRTQNEIRYLMDLMLE 108
K ++I F +D + T N+ R ++++LE
Sbjct: 80 KQITISEFFMDKTEVTNNKYRQFLEVVLE 108
>gnl|CDD|239648 cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes belong
to this superfamily requires a divalent cation, such as
Mg2+ or Mn2+, for their activity and contain a highly
conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where
U = I, L or V), which functions as a metal binding and
catalytic site. Substrates of nudix hydrolases include
intact and oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
& "house-cleaning" enzymes. Substrate specificity is
used to define families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 180
Score = 28.0 bits (63), Expect = 4.2
Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 35/111 (31%)
Query: 25 FGILSVGVIPNHI-AFILDGN--------RRFAKKH-------NLAGEGAGHRAGFLTLM 68
FG+++ GV H+ ++ D + RR K NL G GH G
Sbjct: 28 FGLVTYGV---HLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGH--GEGPEE 82
Query: 69 SLLKYCAE------------LSVKYVSIYAFSIDNFKRTQNEIRYLMDLML 107
+L+K C E V VS Q E+ Y+ DL L
Sbjct: 83 TLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGG--LQPEVEYVYDLEL 131
>gnl|CDD|113799 pfam05042, Caleosin, Caleosin related protein. This family
contains plant proteins related to caleosin. Caleosins
contain calcium-binding domains and have an oleosin-like
association with lipid bodies. Caleosins are present at
relatively low levels and are mainly bound to microsomal
membrane fractions at the early stages of seed
development. As the seeds mature, overall levels of
caleosins increased dramatically and they were
associated almost exclusively with storage lipid bodies.
This family is probably related to EF hands pfam00036.
Length = 174
Score = 27.8 bits (62), Expect = 4.8
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 116 EDGFLSKYGVRVCFIGNL 133
E+GFLSK VR CF G+L
Sbjct: 151 EEGFLSKEAVRRCFDGSL 168
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 28.1 bits (63), Expect = 6.2
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 216 LVDLEKHMYMGVYPNPD---ILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLI 272
L + + + N D ++I N S++++ S+ + G I
Sbjct: 37 LPEWKVKLRYVPVSNEDAETVVIVDPTPNSGSDYIVELSNKSLSNDLQTENAVEGGEEPI 96
Query: 273 WAILNFQRHHAYLEKKKKQ 291
+ +F++ +K+ +
Sbjct: 97 Y--FDFRKQRFSYHEKELK 113
>gnl|CDD|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase
(NAPRTase), subgroup A. Nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
This salvage pathway serves to recycle NAD degradation
products. This subgroup is present in bacteria and
eukaryota (except funghi).
Length = 327
Score = 27.5 bits (62), Expect = 8.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 89 IDNFKRTQNEIRYLMDLMLEKMEFL--LREDGF 119
++NF+ T+ +I YL L + EFL LR F
Sbjct: 53 LENFRFTEEDIDYLRSLGIFDEEFLDYLRGFRF 85
>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase.
Length = 545
Score = 27.7 bits (62), Expect = 9.7
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 89 IDNFKRTQNEIRYLMDLMLEKMEFLLREDGF 119
I NFK T ++I +L +M ED F
Sbjct: 64 IANFKFTDDDIDFLRSVMPSGC-----EDAF 89
>gnl|CDD|224967 COG2056, COG2056, Predicted permease [General function prediction
only].
Length = 444
Score = 27.3 bits (61), Expect = 9.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 24 VFGILSVGVIPNHIAFI 40
+ S +IP HIAFI
Sbjct: 110 LIACFSQNLIPVHIAFI 126
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.408
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,829,659
Number of extensions: 1420303
Number of successful extensions: 1177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1122
Number of HSP's successfully gapped: 41
Length of query: 292
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 196
Effective length of database: 6,679,618
Effective search space: 1309205128
Effective search space used: 1309205128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.6 bits)