RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 038167
         (292 letters)



>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Micrococcus luteus [TaxId: 1270]}
          Length = 229

 Score =  172 bits (437), Expect = 9e-54
 Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 26/253 (10%)

Query: 28  LSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAF 87
           ++   IP HIA I+DGN R+AK+  +     GH  G  T+  + +Y ++L VKY+++YAF
Sbjct: 2   INAAQIPKHIAIIMDGNGRWAKQKKM-PRIKGHYEGMQTVRKITRYASDLGVKYLTLYAF 60

Query: 88  SIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKV 147
           S +N+ R ++E+ YLM L  + +   L E     +  V+V  IG +  + +  +    + 
Sbjct: 61  STENWSRPKDEVNYLMKLPGDFLNTFLPEL---IEKNVKVETIGFIDDLPDHTKKAVLEA 117

Query: 148 MRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHK 207
              T  NT + ++  L Y   +EI+  V+                         +  +  
Sbjct: 118 KEKTKHNTGLTLVFALNYGGRKEIISAVQLIA----------------------ERYKSG 155

Query: 208 NKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIG 267
               + I      ++++    P+P++LIRTSGE RLSNFL+WQ S          WP+  
Sbjct: 156 EISLDEISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFN 215

Query: 268 LRHLIWAILNFQR 280
              L   I  +Q 
Sbjct: 216 EESLAQCISIYQN 228


>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 228

 Score =  171 bits (433), Expect = 4e-53
 Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 26/248 (10%)

Query: 33  IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92
              H+A I+DGN R+AKK        GH+AG  ++   + + A   ++ +++YAFS +N+
Sbjct: 5   GCRHVAIIMDGNGRWAKKQGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENW 63

Query: 93  KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
            R   E+  LM+L    +  L  E   L ++ VR+  IG+    +  ++    K    T+
Sbjct: 64  NRPAQEVSALMELF---VWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTA 120

Query: 153 KNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN 212
            NT + + I   Y    +IV  V +     ++                       N + +
Sbjct: 121 GNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQ----------------------GNLQPD 158

Query: 213 TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLI 272
            I    L +H+ M      D++IRT GE+R+SNFLLWQ +   LY    LWP+   +   
Sbjct: 159 QIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFE 218

Query: 273 WAILNFQR 280
            A+  F  
Sbjct: 219 GALNAFAN 226


>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 83

 Score = 27.3 bits (60), Expect = 0.60
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 194 NPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMG 226
           NP     +DAD   N  Q +     + + +YMG
Sbjct: 8   NPHMWWLQDADPENNSRQASPSQESINQLVYMG 40


>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z,
           PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 62

 Score = 25.8 bits (57), Expect = 1.6
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 249 WQSSNCMLYSPAALWPEIGLRHLIWAILNF 278
           W  S  +++  + LW  I L  ++  +LNF
Sbjct: 33  WDRSKQLIFLGSGLW--IALVLVVG-VLNF 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,061,760
Number of extensions: 49292
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 5
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)