BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038172
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35684|RL3_ORYSJ 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3
PE=2 SV=2
Length = 389
Score = 572 bits (1475), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/303 (88%), Positives = 290/303 (95%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKFEHPRHGSLGFLPRKR++RHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
EKPGSKLHKKETCEAVTIIETPP+++VG+V YVKTPRGLRSLN+VWAQHLSEEVRRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NWCKSKKKAFTKY+ +Y++D GKK IQ QLEK+KKYAS+VRV+AHTQIRKMKGLKQKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
LMEIQ+NGGTIA+KVDY Y FFEK+IPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKKVYK+GK GQESH T
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT 300
Query: 321 EFD 323
EFD
Sbjct: 301 EFD 303
>sp|P22738|RL32_ARATH 60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2
SV=4
Length = 390
Score = 553 bits (1424), Expect = e-157, Method: Compositional matrix adjust.
Identities = 269/303 (88%), Positives = 292/303 (96%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
EKPGSKLHKKETCEAVTIIETPPM+VVGVVGYVKTPRGLRSL TVWAQHLSEE+RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFT+YSK++ET+EGKK IQ+QLEK+KKY SV+RVLAHTQIRKMKGLKQKKAH
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
L EIQ+NGG IA+KVDYA FEKQ+PVDA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKKVY++GK GQE+H+ +T
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMT 300
Query: 321 EFD 323
E+D
Sbjct: 301 EYD 303
>sp|P17094|RL31_ARATH 60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2
SV=5
Length = 389
Score = 551 bits (1419), Expect = e-156, Method: Compositional matrix adjust.
Identities = 265/303 (87%), Positives = 291/303 (96%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKFEHPRHGSLGFLPRKRA RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
EKPGSKLHKKETCEAVTIIETP M+VVGVV YVKTPRGLRSLNTVWAQHLSEEVRRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFT Y+KQY++++GKK IQAQLEK+KKYA+V+RVLAHTQIRKMKGLKQKKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
+MEIQ+NGGTIA+KVD+AY FFEKQIP++AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTE+NKK+Y+LGK G E+HT +T
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMT 300
Query: 321 EFD 323
E+D
Sbjct: 301 EYD 303
>sp|P21531|RL3_RAT 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3
Length = 403
Score = 455 bits (1170), Expect = e-127, Method: Compositional matrix adjust.
Identities = 209/291 (71%), Positives = 256/291 (87%), Gaps = 1/291 (0%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK++KKE EAVTI+ETPPM+VVG+VGYV+TPRGLR+ TV+A+H+S+E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKY K+++ D GKK ++ +KKY V+R++AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAH 179
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
LMEIQVNGGT+AEK+D+A E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG 311
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+G
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQG 290
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2
Length = 403
Score = 454 bits (1169), Expect = e-127, Method: Compositional matrix adjust.
Identities = 209/291 (71%), Positives = 257/291 (88%), Gaps = 1/291 (0%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK++KKE EAVTI+ETPPM+VVG+VGYV+TPRGLR+ TV+A+H+S+E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKY K+++ ++GKK ++ +KKY V+RV+AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAH 179
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
LMEIQVNGGT+AEK+D+A E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG 311
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+G
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQG 290
>sp|Q8NKF4|RL3_ASPFU 60S ribosomal protein L3 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rpl3 PE=1
SV=2
Length = 392
Score = 453 bits (1166), Expect = e-127, Method: Compositional matrix adjust.
Identities = 214/303 (70%), Positives = 258/303 (85%), Gaps = 3/303 (0%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRK+E PRHGSL FLPRKRAARHRGKVK+FPKDDP KP LTA +GYKAGMT +VRD+
Sbjct: 1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDL 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PG+K+HKKE EAVTIIETPP++ VGVVGY++TPRGLRSL TVWA+HLS+EV+RRFYK
Sbjct: 61 DRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKY+K++ + G SI +LE+IKKY +VVRVLAHTQIRK LKQKKAH
Sbjct: 121 NWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAH 178
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
LMEIQVNGG++A+KVD+A FEK I +D++F+KDEMID+I VTKG G++GV +RWG +
Sbjct: 179 LMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKK 238
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT N KV+++GKG E + T
Sbjct: 239 LPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEGNAS-T 297
Query: 321 EFD 323
+FD
Sbjct: 298 DFD 300
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=3
Length = 403
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 208/291 (71%), Positives = 255/291 (87%), Gaps = 1/291 (0%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK++KKE EAVTI+ETPPM+VVG+VGYV+TPRGLR+ TV+A+H+S+E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKY K+++ D GKK ++ +KKY V+R++AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAH 179
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
LMEIQVNGGT+AEK+D+A E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG 311
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+G
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQG 290
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2
Length = 403
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 205/291 (70%), Positives = 254/291 (87%), Gaps = 1/291 (0%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK++KKE EAVTI+ETPPM++VG+VGYV+TPRGLR+ T++A+H+S+E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKY K+++ +GKK ++ +KKY V+RV+AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAH 179
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
LME+QVNGGT+AEK+D+A E+Q+PV VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG 311
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+G
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQG 290
>sp|Q4R5Q0|RL3_MACFA 60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3
Length = 403
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/291 (71%), Positives = 255/291 (87%), Gaps = 1/291 (0%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK++KKE AVTI+ETPPM+VVG+VGYV+TPRGLR+ TV+A+H+S+E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKY K+++ ++GKK ++ +KKY V+RV+AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAH 179
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
LMEIQVNGGT+AEK+D+A E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG 311
LPRKTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKK+YK+G+G
Sbjct: 240 LPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQG 290
>sp|P59671|RL3_NEUCR 60S ribosomal protein L3 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-3
PE=3 SV=1
Length = 392
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 208/303 (68%), Positives = 255/303 (84%), Gaps = 3/303 (0%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRK+E PRHGSL +LPRKRAARHRGKVK+FPKDD KP LTA +GYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDL 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PG+K HKKE EAVTII+TPPM+VVG+VGY++TPRGLRSL TVWA+HLS+EV+RRFYK
Sbjct: 61 DRPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKY K++ + G +I +LE+IKKY +VVRVLAHTQIRK LKQKKAH
Sbjct: 121 NWYKSKKKAFTKYVKKHSDNNG-AAITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAH 178
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
LMEIQ+NGG++A+KV++ +G FEK + +D++F+KDE+ID+I VTKG G+ GV RWG +
Sbjct: 179 LMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTARWGTKK 238
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+Y++GKG E + T
Sbjct: 239 LPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGKGDAED-SAAT 297
Query: 321 EFD 323
E D
Sbjct: 298 EVD 300
>sp|P34113|RL3_DICDI 60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1
SV=2
Length = 398
Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/308 (69%), Positives = 257/308 (83%), Gaps = 6/308 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKFE PRHG+LGF PRKRAARH+GKVK+FPKDD ++ LTAF+GYKAGMTH+VRD+
Sbjct: 1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDL 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
EKPGSK+HKKE EAVTIIE PPM +VG+VGYV+T +GL++ TVWAQHLS+ RRR YK
Sbjct: 61 EKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYK 120
Query: 141 NWCKSK-KKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKA 199
NW KSK KKAFTKY KQYET+EGKKSI+A L+ IKK SVVRV+AHTQ+ K+K L QKKA
Sbjct: 121 NWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK-LTQKKA 179
Query: 200 HLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 259
H++EIQVNGG+I EKV++A FEK + V VF ++E+ID+IGVTKGKG+ GV+ RWGV
Sbjct: 180 HVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVR 239
Query: 260 RLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG----GQES 315
+LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKK+Y++G+ G++
Sbjct: 240 KLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQI 299
Query: 316 HTGITEFD 323
TG TEFD
Sbjct: 300 STGKTEFD 307
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2
Length = 402
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/306 (66%), Positives = 255/306 (83%), Gaps = 4/306 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP LTAF+ +KAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
+KPGSK++KKE EAVTI E PPM++VG+VGY+ TPRG R TVWA+HLSE+ R RFYK
Sbjct: 61 DKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW SKKKAF K++K+++ ++G+KSI+A L K+KKY S +RV+AHTQ++ MK ++KKAH
Sbjct: 121 NWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKH-REKKAH 179
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
+MEIQ+NGGT+AEKVD+A EKQ+PVD+VF +DEMID IGVTKGKG++GV +RW +
Sbjct: 180 IMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKK 239
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGG---QESHT 317
LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK+Y+LGK +
Sbjct: 240 LPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKKN 299
Query: 318 GITEFD 323
G T++D
Sbjct: 300 GGTDYD 305
>sp|Q759R7|RL3_ASHGO 60S ribosomal protein L3 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL3 PE=3 SV=2
Length = 387
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/303 (70%), Positives = 256/303 (84%), Gaps = 4/303 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRK+E PRHG LGFLPRKRAA RG+VKAFPKDD SKP LT+FLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDL 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK HK+E EAV++++TPPM+VVGVVGY++TPRGLRSL TVWA+HLS+E++RRFYK
Sbjct: 61 DRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKYS +Y D +I+ +L +IKKYASVVRVLAHTQ+RK L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSAKYAQDGA--AIERELARIKKYASVVRVLAHTQVRKTP-LVQKKAH 177
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
L EIQ+NGG+++EKVD+A FEK + VD+VF+++EMID+I VTKG G+EGV RWG +
Sbjct: 178 LAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHRWGTKK 237
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N KVY++GKGG E + T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDEGNAA-T 296
Query: 321 EFD 323
EFD
Sbjct: 297 EFD 299
>sp|P36584|RL3B_SCHPO 60S ribosomal protein L3-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl3b PE=3 SV=2
Length = 388
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/303 (71%), Positives = 255/303 (84%), Gaps = 4/303 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK+HK+E EAVTIIETPPM+VVGVVGYV+TPRGLRSL TVWA+HLSEEV+RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKY+K+Y E +SI +LE+IKKY SVVRVLAHTQIRK L QKKAH
Sbjct: 121 NWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAH 177
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
LMEIQVNGG++A+KV++A FEK + + + F+++EMID+IGVT+GKG EG RWG R
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR 237
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N K+Y++G G ++ T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNAST 296
Query: 321 EFD 323
+FD
Sbjct: 297 DFD 299
>sp|P40372|RL3A_SCHPO 60S ribosomal protein L3-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl3a PE=1 SV=2
Length = 388
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/303 (71%), Positives = 255/303 (84%), Gaps = 4/303 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK+HK+E EAVT+IETPPM+VVGVVGYV+TPRGLRSL TVWA+HLSEEV+RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKY+K+Y E +SI +LE+IKKY SVVRVLAHTQIRK L QKKAH
Sbjct: 121 NWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAH 177
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
LMEIQVNGG++A+KV++A FEK + + + F+++EMID+IGVT+GKG EG RWG R
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR 237
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N K+Y++G G ++ T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNAST 296
Query: 321 EFD 323
+FD
Sbjct: 297 DFD 299
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3
SV=2
Length = 401
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 251/306 (82%), Gaps = 4/306 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKF PRHG +GF P+KR+ +RG++KAFPKDD SKP LTAFLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
+KPGSK++KKE EAV+IIETPPM++ GV GY+ TP+G R+L T+WA+HLSEE RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKY+K+++ ++GKK I+A K+KKY S +RV+AHTQ++ ++ +QKKAH
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAH 179
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
L+EIQ+NGGTI +KVD+A EKQI VD VF +DEMID IGVTKG G++GV +RW +
Sbjct: 180 LVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKK 239
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGG---QESHT 317
LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N K+Y++GK + +
Sbjct: 240 LPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNN 299
Query: 318 GITEFD 323
G TEFD
Sbjct: 300 GSTEFD 305
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=2
SV=1
Length = 401
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 251/306 (82%), Gaps = 4/306 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKF PRHG +GF P+KR+ +RG++KAFPKDD SKP LTAFLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
+KPGSK++KKE EAVTI+ETPPM++ GV GYV TP+G R+L T+WA+HLSEE RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKY+K+++ ++GKK I+A K+KKY S +RV+AHTQ++ ++ +QKKAH
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAH 179
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
L+EIQVNGGTI +KVD+A EKQ+ VD VF +DEMID IGVT+G G++GV +RW +
Sbjct: 180 LVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKK 239
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGG---QESHT 317
LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N K+Y++GK + +
Sbjct: 240 LPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNN 299
Query: 318 GITEFD 323
G TEFD
Sbjct: 300 GSTEFD 305
>sp|Q6BXM5|RL3_DEBHA 60S ribosomal protein L3 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RPL3 PE=3 SV=1
Length = 389
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/303 (70%), Positives = 255/303 (84%), Gaps = 4/303 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRK+E PRHGSLGFLPRKR+A RG+VK+FPKD SKP LTAFLGYKAGMT +VRD+
Sbjct: 1 MSHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDL 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK+HK+E EA T+++TPP++VVGVVGYV+TPRGLRSL TVWA+HLSEEVRRRFYK
Sbjct: 61 DRPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKYS +Y D + ++ +L +IKKYASVVRVLAHTQI+K L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLAHTQIKKTP-LAQKKAH 177
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
L EIQVNGG++++KVD+A FEK + VD+VF+KDEM+D+ VTKG G+EGV RWG +
Sbjct: 178 LAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKGHGFEGVTHRWGTKK 237
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N KVY++G G ES +G T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDES-SGAT 296
Query: 321 EFD 323
EFD
Sbjct: 297 EFD 299
>sp|O16797|RL3_DROME 60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=2
SV=3
Length = 416
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/291 (68%), Positives = 241/291 (82%), Gaps = 1/291 (0%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKF PRHGS+ F P+KR+ARHRGKVKAFPKDD SKP LT F+GYKAGMTHIVR+
Sbjct: 1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK++KKE EAVT++ETPPM+VVG VGY++TP GLR+L VWAQHLSEE RRRFYK
Sbjct: 61 DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTK SK++ D GKKSI+ K+ +Y V+RV+AH+QIR +K +QKKAH
Sbjct: 121 NWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQ-RQKKAH 179
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
+MEIQ+NGG+I +KV +A EK I V VF +DEMID +GVTKGKG++GV +RW +
Sbjct: 180 VMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKK 239
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG 311
LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKK+Y++G G
Sbjct: 240 LPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAG 290
>sp|Q6CJR7|RL3_KLULA 60S ribosomal protein L3 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RPL3 PE=3 SV=1
Length = 387
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/303 (67%), Positives = 252/303 (83%), Gaps = 4/303 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRK+E PRHG LGFLPRKRAA RG+VK+FPKDD +KP LT+FLGYKAGM+ IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDL 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK HK+E EAVT+++TPP++VVGVVGYV+TPRGLRSL TVWA+HLS+EV+RRFYK
Sbjct: 61 DRPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKYS +Y E + +L +IKKYASVVRVL HTQ+RK L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSAKYA--ENGAQVDRELARIKKYASVVRVLVHTQVRKTP-LSQKKAH 177
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
L EIQ+NGG++++KVD+A FEK + VD+VF+++EMID++ VTKG G+EGV RWG +
Sbjct: 178 LAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHRWGTKK 237
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KVY++GKG E++ T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKGDDEANAA-T 296
Query: 321 EFD 323
EFD
Sbjct: 297 EFD 299
>sp|P14126|RL3_YEAST 60S ribosomal protein L3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL3 PE=1 SV=4
Length = 387
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/303 (69%), Positives = 250/303 (82%), Gaps = 4/303 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRK+E PRHG LGFLPRKRAA R +VKAFPKDD SKP LT+FLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK HK+E EAVT+++TPP++VVGVVGYV+TPRGLRSL TVWA+HLS+EV+RRFYK
Sbjct: 61 DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKYS +Y D I+ +L +IKKYASVVRVL HTQIRK L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSAKYAQDGA--GIERELARIKKYASVVRVLVHTQIRKTP-LAQKKAH 177
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
L EIQ+NGG+I+EKVD+A FEK + VD+VF+++EMID I VTKG G+EGV RWG +
Sbjct: 178 LAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKK 237
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N K+Y++GKG E++ G T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEAN-GAT 296
Query: 321 EFD 323
FD
Sbjct: 297 SFD 299
>sp|Q6FTJ2|RL3_CANGA 60S ribosomal protein L3 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL3 PE=3
SV=1
Length = 387
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/303 (68%), Positives = 251/303 (82%), Gaps = 4/303 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRK+E PRHG LGFLPRKRAA RG+VK+FPKDD SKP LT+FLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDL 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++PGSK HK+E EAVT+++TPP++VVGVVGYV+TPRGLRSL TVWA+HLS+EV+RRFYK
Sbjct: 61 DRPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW KSKKKAFTKYS +Y + + I+ +L +IKKYA+VVRVL HTQ+RK L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSAKYAQNGAE--IERELARIKKYATVVRVLVHTQVRKTP-LVQKKAH 177
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
L EIQ+NGG+I+EKVD+A FEK + VD+VF+++EMID I VTKG G+EGV RWG +
Sbjct: 178 LAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKK 237
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y++GKG E + T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKGDDEGNAA-T 296
Query: 321 EFD 323
FD
Sbjct: 297 NFD 299
>sp|Q3SZ10|RL3L_BOVIN 60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3
Length = 407
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/291 (64%), Positives = 238/291 (81%), Gaps = 1/291 (0%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
+PG K+ K+E EAVTI+ETPP++VVGVVGYV TPRGLRS T++A+HLS+E RRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
+W KSKKKAFTK K++ +GKK +Q +KKY V+RV+ HTQ+ K+ +QKKAH
Sbjct: 121 DWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAH 179
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
+ME+Q+NGGT+AEKV +A EKQ+PV +VF ++E+ID+I VTKG+G +GV +RW +
Sbjct: 180 IMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKK 239
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG 311
LPRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKK+Y++G+G
Sbjct: 240 LPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRG 290
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3
Length = 407
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/291 (64%), Positives = 237/291 (81%), Gaps = 1/291 (0%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
+PG K+ K+E EAVTI+ETPP++VVGVVGYV TPRGLRS T++A+HLS+E RRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
+W KSKKKAFTK K++ +GKK +Q +KKY V+RV+ HTQ+ K+ +QKKAH
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAH 179
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
+MEIQ+NGGT+AEKV +A EKQ+PV +VF + E+ID+I VTKG+G +GV +RW +
Sbjct: 180 IMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKK 239
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG 311
LPRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKK++++G+G
Sbjct: 240 LPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRG 290
>sp|O96774|RL3_TETTH Ribosomal protein L3 OS=Tetrahymena thermophila GN=RPL3 PE=1 SV=1
Length = 391
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/296 (60%), Positives = 231/296 (78%), Gaps = 5/296 (1%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
MSHRKFE PRHGSLGF PR+R HRG+ ++FPKDDPSK LTAF G+KAGMTHI+R+V
Sbjct: 1 MSHRKFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGFKAGMTHILREV 60
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
++ GS+ +KKE EAVT+IE PPM +VGVVGY+ TPRGLR+L TVWA+ + ++RFYK
Sbjct: 61 DRSGSRHNKKEVVEAVTVIECPPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYK 120
Query: 141 NWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAH 200
NW S KKAFT + K ++ +K+ L++I+KY SVVRV+AHT + K+ L+QKK H
Sbjct: 121 NWANSNKKAFTHHEKNFD----QKAQDLLLKRIEKYCSVVRVIAHTNMSKL-NLRQKKNH 175
Query: 201 LMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260
++EIQVNGG +AEKV +A EK++ VD++F ++EM+D++GVTKGKG+ GV+ R+GV
Sbjct: 176 ILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFGVKH 235
Query: 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESH 316
L +KTHRG RKV CIGAWHP+R+ FTV RAGQ GYHHRTE NKKVY++GKG S+
Sbjct: 236 LQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTETNKKVYRVGKGDDASN 291
>sp|Q8SQI3|RL3_ENCCU 60S ribosomal protein L3 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPL3-1 PE=1 SV=1
Length = 383
Score = 291 bits (744), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 158/306 (51%), Positives = 203/306 (66%), Gaps = 16/306 (5%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRD- 79
MS RKF PRHGSL F PRKR+ R AFP DD S+P LT F+ YKAGMTH+VR
Sbjct: 1 MSCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTK 60
Query: 80 VEKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFY 139
+ +K +E +AVT++E PPM+V G+VGY KT GLR L V A ++S+ V RR +
Sbjct: 61 TQVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMF 120
Query: 140 KNWCKSKKKA--FTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQK 197
N SK+ A F K S ++++E IK+ A VRVL TQ +KGL K
Sbjct: 121 GNRYASKESAGQFCKGS----------VCESRVEMIKERAHCVRVLVQTQPTLIKGLGLK 170
Query: 198 KAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWG 257
KAH+ EIQVNGG+I+EKV++A G EK+I + VF +E ID IGVTKGKG++G V R+G
Sbjct: 171 KAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFG 230
Query: 258 VTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHT 317
V + PRK+ +G+RKVACIGAWHP+RV +++ARAGQ G+H RTE NK+VY +G G S
Sbjct: 231 VRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMIGNG---SSN 287
Query: 318 GITEFD 323
TEFD
Sbjct: 288 IKTEFD 293
>sp|Q9YFM2|RL3_AERPE 50S ribosomal protein L3P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl3p PE=3
SV=1
Length = 344
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 169/298 (56%), Gaps = 27/298 (9%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
M RK PR GSLGF PRKRA+R +VK +P+ D KP L AFLGY+AGMTH+
Sbjct: 1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVD 59
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTP-RGLRSLNTVWAQHLSE-EVRRRF 138
++PG KE VTI+ETPPM V V Y P RG SL WAQ E E++RR
Sbjct: 60 DRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI 119
Query: 139 YKNWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKK 198
++TD+ KS++ +L+K A VR++A +Q + GL +KK
Sbjct: 120 -------------STLGSFDTDKMLKSLEERLDK----AEDVRLIAASQPKLAGGLSKKK 162
Query: 199 AHLMEIQVNGGTIAEKV-DYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWG 257
L+EI+V G + K+ DYA I V+ VF++ +++D+I VTKGKG++GV+ RWG
Sbjct: 163 PDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWG 222
Query: 258 VTRLPR--KTHRGLRKVACIGAWHPARVSF-TVARAGQNGYHHRTEMNKKVYKLGKGG 312
V LPR K +G R+ IGA R +F +AGQ G+H RTE NK++ + G
Sbjct: 223 VKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDG 277
>sp|P54014|RL3_METJA 50S ribosomal protein L3P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl3p PE=3 SV=1
Length = 335
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 162/292 (55%), Gaps = 25/292 (8%)
Query: 26 FEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGS 85
PR GSL F PRKRA R +++++P++D RL AF YKAGM+H + P S
Sbjct: 5 INRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKS 61
Query: 86 KLHKKETCEAVTIIETPPMMVVGVVGYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCK 144
+E +TI+E PP+ V + Y + R L +L VWA +L +E+ R+ K
Sbjct: 62 PNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----K 116
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEI 204
KK E +K+++ LE +K VRVL HT K+ L +KK ++EI
Sbjct: 117 LPKK------------EDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEI 162
Query: 205 QVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 263
++ G I E+++YA KQ+ + VFQ+ E++D IGVTKGKG++G V RWGV + +
Sbjct: 163 RIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGK 222
Query: 264 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
+G+ R V IG W P V ++V GQ GYH RTE NK++ K+G G E
Sbjct: 223 HARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE 274
>sp|O28354|RL3_ARCFU 50S ribosomal protein L3P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl3p PE=3 SV=1
Length = 331
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 166/292 (56%), Gaps = 25/292 (8%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K+ PR GSL F PRKRA +++A+P+ D R+ F GYKAGMTH+V ++
Sbjct: 2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKN 58
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
S + +E VT+IETPPM V V Y KT G++ VW+ +L + + RR N K
Sbjct: 59 SPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL--NLPK 116
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEI 204
K+ + ++ K +++ AS VRV+ +TQ + G+ +K +ME
Sbjct: 117 ----------KEPDVEKLKAAVENG-------ASEVRVVTYTQPYLITGVPKKVPDVMEH 159
Query: 205 QVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK 264
++ GG + E +DYA K+I V VF + +ID+I VTKGKG++G V RWGV L K
Sbjct: 160 RI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAK 218
Query: 265 THRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
R R+V +G W+P V +TV +AGQ G+H RTE NK++ K+G+ G+E
Sbjct: 219 HARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE 270
>sp|A6UQJ0|RL3_METVS 50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1
Length = 334
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 164/292 (56%), Gaps = 24/292 (8%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPK 60
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ +E+ R+
Sbjct: 61 SPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL------ 114
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEI 204
TK ++ +T E S+ A LEK +RV+ HT K G+ +KK ++EI
Sbjct: 115 ----TVTK-KEEIKTVE---SLDAVLEKTVD----LRVIVHTN-PKTTGIPKKKPEVVEI 161
Query: 205 QVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 263
+V G ++AEK+ YA K + ++ VF+ E ID + VTKGKG++G V RWGV + +
Sbjct: 162 RVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGK 221
Query: 264 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
+G+ R+ IG W P RV +TV AGQ G+H RTE NK++ KLG G E
Sbjct: 222 HQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|Q9UWG2|RL3_METVA 50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3
SV=1
Length = 334
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 164/292 (56%), Gaps = 24/292 (8%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPK 60
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ +E+ R+
Sbjct: 61 SPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL------ 114
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEI 204
TK ++ +T E S+ A LEK +RV+ HT K G+ +KK ++EI
Sbjct: 115 ----TVTK-KEEIKTVE---SLDAVLEKTVD----LRVIVHTN-PKTTGIPKKKPEVVEI 161
Query: 205 QVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 263
+V G ++AEK+ YA K + ++ VF+ E ID + VTKGKG++G V RWGV + +
Sbjct: 162 RVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGK 221
Query: 264 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
+G+ R+ IG W P RV +TV AGQ G+H RTE NK++ KLG G E
Sbjct: 222 HQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|C6A159|RL3_THESM 50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=rpl3p PE=3 SV=1
Length = 359
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 162/305 (53%), Gaps = 24/305 (7%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
+ PR GSL + PRKRA +++ +P++ + R+ F GYKAGMTH++ + PG
Sbjct: 3 RISRPRRGSLAYSPRKRAKSIVPRIRKWPQE---QEVRMLGFAGYKAGMTHVLMIDDAPG 59
Query: 85 SKLHK-KETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWC 143
L K KE VTI+E PP+MV G+ Y + GL + V E N+
Sbjct: 60 --LTKGKEIFVPVTIVEAPPLMVYGIRAYKRGYFGLETATEVIVPDFKLE-------NYP 110
Query: 144 KSKKKAFTKY----------SKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKG 193
+ K T Y K Y T+E + +LE + K VV + A +
Sbjct: 111 SKRAKNVTFYKLLERRIKTLPKNY-TEEVFQQKLGELEDLVKTGEVVELRALVATQPWLA 169
Query: 194 LKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVV 253
+KK +ME V G +I EK +Y K+I V + Q+ E++DI+ VTKGKG +G V
Sbjct: 170 RIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAVTKGKGTQGPV 229
Query: 254 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQ 313
RWGV K +G RKVA IG WHPARV +TV RAGQ G+HHRTE NK++ ++G+ G+
Sbjct: 230 KRWGVKLTSHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEFNKRLLRIGENGK 289
Query: 314 ESHTG 318
+ G
Sbjct: 290 LTLNG 294
>sp|A6VHD2|RL3_METM7 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl3p PE=3 SV=1
Length = 334
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 161/292 (55%), Gaps = 24/292 (8%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ L ++ R+ +
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDNDLGRKLTLVKKE 120
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEI 204
KK A ++ A LEK A+ VRV+ HT K G+ +KK ++EI
Sbjct: 121 EKKTA--------------DALDAVLEK----ATEVRVIVHTN-PKTTGIPKKKPEVVEI 161
Query: 205 QVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 263
++ G ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ + +
Sbjct: 162 RIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGK 221
Query: 264 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
+G+ R IG W P RV +TV GQ G+H RTE NK++ KLG G E
Sbjct: 222 HQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|Q6LX10|RL3_METMP 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl3p PE=3 SV=1
Length = 334
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 162/292 (55%), Gaps = 24/292 (8%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
S +E VT++ETP + V G+ Y KT +GL++L VWA+ L ++ R+
Sbjct: 61 SPNSSQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRKL----TL 116
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEI 204
+KK E KK++ A L+ + + A+ VR + HT K G+ +KK ++EI
Sbjct: 117 AKK-------------EEKKTVDA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEI 161
Query: 205 QVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 263
++ G ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ + +
Sbjct: 162 RIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGK 221
Query: 264 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
+G+ R IG W P RV +TV GQ G+H RTE NK++ KLG G E
Sbjct: 222 HQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|O59418|RL3_PYRHO 50S ribosomal protein L3P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl3p PE=3 SV=1
Length = 362
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 165/303 (54%), Gaps = 27/303 (8%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSL F PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KIHRPRKGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
+ KE VTIIETPP+ V G+ Y + GL + V + N+
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETAGEVIVPDFELD-------NYTP 111
Query: 145 SKK---KAFTKYS----------KQYETDEGKKSIQAQLEKIKKYASV-VRVLAHTQIRK 190
SKK + FT Y K Y +E ++ + A + IK+ V VR L TQ
Sbjct: 112 SKKGKGRKFTFYQFLGRRIATLPKDYTQEEFEQKLGALEDMIKEGEIVEVRALVSTQPWV 171
Query: 191 MKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYE 250
+K +KK +ME + G ++ EK +Y K+I V V ++ E++D+I VTKGKG +
Sbjct: 172 IK--LKKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQ 229
Query: 251 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK 310
G V RWG+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+
Sbjct: 230 GPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE 289
Query: 311 GGQ 313
G+
Sbjct: 290 NGK 292
>sp|Q3IMY8|RL3_NATPD 50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl3p PE=3 SV=1
Length = 336
Score = 177 bits (450), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 154/298 (51%), Gaps = 22/298 (7%)
Query: 29 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLH 88
PR GS+GF PR RAA + ++P DD +P L F GYKAGM+H+V ++P S
Sbjct: 7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQPG-LQGFAGYKAGMSHVVAINDEPNSPRE 64
Query: 89 KKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSKKK 148
+E VT++ETPPM V V Y TP G R L VW + E++ R ++
Sbjct: 65 GQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSLS---VPEEQS 121
Query: 149 AFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG 208
+ + DEG + VRV+ HT + + +K+ +ME +V G
Sbjct: 122 GDIEGDIRTALDEGA-------------LADVRVITHTVPGALSSVPKKEPDVMETRVGG 168
Query: 209 GTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH 266
G+++++VD+A + + V VF+ E D+ G+TKGKG +G V RWGV + K
Sbjct: 169 GSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHA 228
Query: 267 RG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEF 322
R R++ +G W+P+RV TV + GQ GYH RTE+NK++ LG G +
Sbjct: 229 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLGDDDVSPDGGFVNY 286
>sp|O26110|RL3_METTH 50S ribosomal protein L3P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl3p PE=3 SV=1
Length = 337
Score = 177 bits (449), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 154/289 (53%), Gaps = 24/289 (8%)
Query: 28 HPRHGSLGFLPRKRAARHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSK 86
PR GS+ F PRKRAAR +VK++P+ D+P L A GYKAGMTH++ + S
Sbjct: 6 QPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSP 61
Query: 87 LHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSK 146
E VTI+E PP+ V+ V Y KT RGL++L V A +++RR+
Sbjct: 62 TEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRK--------- 112
Query: 147 KKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQV 206
T + Y+ + + I++ +E Y + VRV+ HT R + + +KK + E +
Sbjct: 113 ---LTPPADDYDQEAAIEKIRSNME----YVADVRVIVHTNPR-LASVPKKKPEVFECGL 164
Query: 207 NGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH 266
G T EK +YA K + +F + +D I VTKGKG++G V RWG+ K
Sbjct: 165 GGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIRIQYGKAA 224
Query: 267 RGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQ 313
R R + +G W P+R +TV +AGQ GYH RTE NK++ K+G +
Sbjct: 225 RSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIGDASE 273
>sp|A9A9B8|RL3_METM6 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl3p PE=3 SV=1
Length = 334
Score = 177 bits (449), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 160/292 (54%), Gaps = 24/292 (8%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ L ++ R+ +
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRKLTLVKKE 120
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEI 204
KK A ++ A LEK A+ VR + HT K G+ +KK ++EI
Sbjct: 121 EKKTA--------------DALDAVLEK----ATEVRAIVHTN-PKTTGIPKKKPEVVEI 161
Query: 205 QVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 263
++ G ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ + +
Sbjct: 162 RIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGK 221
Query: 264 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
+G+ R IG W P RV +TV GQ G+H RTE NK++ KLG G E
Sbjct: 222 HQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|Q9V1T5|RL3_PYRAB 50S ribosomal protein L3P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl3p PE=3 SV=1
Length = 361
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 164/295 (55%), Gaps = 12/295 (4%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSL F PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWA------QHLSEEVRRRF 138
+ KE VTIIETPP+ V G+ Y + GL + V ++S++ + R
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
Query: 139 YKNWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKK 198
+ + K++ T K Y D+ ++ + LE + K +V V A + +KK
Sbjct: 119 FTFYQLLKRRIAT-LPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKK 176
Query: 199 AHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 258
+ME + G ++ EK +Y K++ V V ++ E++D+I VTKGKG +G V RWG+
Sbjct: 177 PEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 236
Query: 259 TRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQ 313
K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+ G+
Sbjct: 237 KLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK 291
>sp|A4FVY2|RL3_METM5 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl3p PE=3 SV=1
Length = 334
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 162/292 (55%), Gaps = 24/292 (8%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ L ++ R+
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRKL----TL 116
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEI 204
+KK E KK+ A L+ + + A+ VR + HT K G+ +KK ++EI
Sbjct: 117 AKK-------------EEKKTADA-LDAVVEKATEVRAIVHTN-PKTTGIPKKKPEVVEI 161
Query: 205 QVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 263
++ G ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ + +
Sbjct: 162 RIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGK 221
Query: 264 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
+G+ R IG W P RV +TV GQ G+H RTE NK++ KLG G E
Sbjct: 222 HQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273
>sp|C5A286|RL3_THEGJ 50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1
Length = 346
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 157/303 (51%), Gaps = 24/303 (7%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSL F PRKRA ++K +PKD R+ F GYKAGMTHI+ + PG
Sbjct: 3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKDSE---VRMLGFAGYKAGMTHILMIDDSPG 59
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
KE VTI+E PP+ V G+ Y + GL + VW L++ V+RR
Sbjct: 60 LT-KGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRI------ 112
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVV--RVLAHTQIRKMKGLKQKKAHLM 202
K Y ++ K + QLE + +V R+L HTQ +K +KK +M
Sbjct: 113 ------KTLPKNYGEEDFKAKL-GQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVM 163
Query: 203 EIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 262
E + G + K +YA K+I V + E++D+I VTKGKG +G V RWGV
Sbjct: 164 EYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQF 223
Query: 263 RKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGIT 320
K R R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ G+ G
Sbjct: 224 HKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGKLVLNG-N 282
Query: 321 EFD 323
E D
Sbjct: 283 EID 285
>sp|P20279|RL3_HALMA 50S ribosomal protein L3P OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl3p PE=1
SV=5
Length = 338
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 156/294 (53%), Gaps = 21/294 (7%)
Query: 29 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLH 88
PR GSLGF PRKR+ + ++P DD +P + F GYKAGMTH+V ++P S
Sbjct: 7 PRKGSLGFGPRKRSTSETPRFNSWPSDD-GQPG-VQGFAGYKAGMTHVVLVNDEPNSPRE 64
Query: 89 KKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSKKK 148
E VT+IETPPM V + Y TP G R L VW E+ R
Sbjct: 65 GMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL---------- 114
Query: 149 AFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG 208
+ ++ D ++ I+ E +R++ HT + + +KK +ME +V G
Sbjct: 115 ---DVPEDHDPDAAEEQIRDAHEAGD--LGDLRLITHTVPDAVPSVPKKKPDVMETRVGG 169
Query: 209 GTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH 266
G++++++D+A E + ++ +F+ E D+ GVTKGKG +G V RWGV + K
Sbjct: 170 GSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Query: 267 RG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTG 318
R R++ +G W+P+RV TV + GQ GYH RTE+NK++ +G+G + + G
Sbjct: 230 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDG 283
>sp|A5UL89|RL3_METS3 50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1
Length = 336
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 152/284 (53%), Gaps = 25/284 (8%)
Query: 28 HPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTH-IVRDVEKPGSK 86
PR GS+ F PRKRAA+ ++K++P++D K L GYK GMTH +V D +K S
Sbjct: 6 QPRKGSVAFSPRKRAAKETPRIKSWPQNDEPK---LLGLAGYKVGMTHALVTDSDK-NSP 61
Query: 87 LHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSK 146
+ + VT++E PP++V+G+ Y KT RGL+ + V A +L EE+ R+
Sbjct: 62 TNGMDVFTPVTVLEVPPVVVMGIRAYEKTSRGLKVITEVLADNLDEELSRKI-------- 113
Query: 147 KKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQV 206
K+Y E IQ L+K + ++VL HT K+ + +KK + E +
Sbjct: 114 -----SLPKEYNKSEAIAKIQGVLDKTED----IKVLVHTN-PKVTSVPKKKPDIFECGI 163
Query: 207 NGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH 266
G EK++ A ++ + + + +D I TKGKG++GVV RWG+ K
Sbjct: 164 GGANPEEKLNTALELLGNEVKASDILNEGQFVDAIATTKGKGFQGVVKRWGIRIQYGKAV 223
Query: 267 RG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKL 308
R R V IG W P+R +TVA+AGQ GYH RTE NKK+ K+
Sbjct: 224 RAGKGRHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEFNKKILKI 267
>sp|Q5JDJ0|RL3_PYRKO 50S ribosomal protein L3P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl3p PE=3 SV=1
Length = 346
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 156/293 (53%), Gaps = 23/293 (7%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSL + PRKRA +++++PKD R+ F GYKAGMTHI+ + PG
Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRSWPKDSE---VRMLGFAGYKAGMTHILMIDDSPG 59
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
KE VTI+E PP+ V G+ Y + GL + VW L + V RR K
Sbjct: 60 LT-KGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHDLHKNVARR-----IK 113
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLM 202
+ K + +E ++ QLE + + VR+L HTQ + GLK KK +M
Sbjct: 114 TLPKNYN--------EEAFQAKLGQLEDLVNDGEIADVRLLVHTQ-PWLIGLK-KKPEVM 163
Query: 203 EIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 262
E + G + K DYA K++ V + E++D+I VTKGKG +G V RWGV
Sbjct: 164 EYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQF 223
Query: 263 RKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQ 313
K R R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ G+
Sbjct: 224 HKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK 276
>sp|Q8TZZ8|RL3_PYRFU 50S ribosomal protein L3P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl3p PE=1 SV=1
Length = 365
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 159/309 (51%), Gaps = 17/309 (5%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSLGF PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
+ KE VTIIETPP+ V G+ Y GL + V + + K
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLD---NYPAKERK 115
Query: 145 SKKKAFTKYSKQYE----------TDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGL 194
K K + K E T E + QLE + K +V V A +
Sbjct: 116 GKPKPKMTFYKLLERRIATLPKNYTQEMFEQKLGQLEDMIKEGEIVDVRAIVATQPWVIK 175
Query: 195 KQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVT 254
+KK +ME + G ++ EK +Y K++ V V ++ E++D+I VTKGKG +G V
Sbjct: 176 LKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVK 235
Query: 255 RWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
RWG+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+ G+
Sbjct: 236 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKL 295
Query: 315 SHTGITEFD 323
TE +
Sbjct: 296 KLDENTEIE 304
>sp|B6YSL3|RL3_THEON 50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1)
GN=rpl3p PE=3 SV=1
Length = 347
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 156/296 (52%), Gaps = 29/296 (9%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GSL + PRKRA +++ +PKD R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPKDSE---VRMLGFAGYKAGMTHILMIDDRPG 59
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
KE VT++E PP+ V G+ Y + GL + VW L++ V+RR
Sbjct: 60 LT-KGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVKRRI------ 112
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASV-----VRVLAHTQIRKMKGLKQKKA 199
K D +++ QA+L +++ + VR+L HTQ +K +KK
Sbjct: 113 ----------KTLPKDYNEEAFQAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKP 160
Query: 200 HLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 259
+ME + G + K DYA K++ V + E++D+I VTKGKG +G V RWG+
Sbjct: 161 EVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGIK 220
Query: 260 RLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQ 313
K R R V +G WHP RV +TV +AGQ G+HHRTE NK++ +G+ G+
Sbjct: 221 IQFHKAQRAGKGRHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK 276
>sp|Q8TY90|RL3_METKA 50S ribosomal protein L3P OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl3p PE=3 SV=1
Length = 361
Score = 171 bits (434), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 150/284 (52%), Gaps = 21/284 (7%)
Query: 33 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKET 92
SL F PRKRA+R +++++P ++ R+ F GYKAGMTH + + P S +E
Sbjct: 16 SLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTEGEEI 72
Query: 93 CEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSKKKAFTK 152
VTI++ PPM V + Y TP G R + WA+ E R + + K
Sbjct: 73 SVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVFTVPKDGEAGDLDK 132
Query: 153 YSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIA 212
+ DEG +RV+ TQ +K G+ +KK +ME ++ G +
Sbjct: 133 IEEL--VDEG-------------IVEEIRVIVATQPKKA-GVPKKKPDVMEYRIGGKDVR 176
Query: 213 EKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--R 270
E+ +YA ++I VF + E++D+ +TKGKG++GVV RWGVT RKT R R
Sbjct: 177 ERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGR 236
Query: 271 KVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
+ IG P+RV +TV AGQ GYH RTE NK++ K+G+ G+E
Sbjct: 237 HIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE 280
>sp|A1RVG3|RL3_PYRIL 50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl3p PE=3 SV=1
Length = 342
Score = 171 bits (432), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 156/295 (52%), Gaps = 25/295 (8%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GS+G PRKRAA +V+ +P+ + KP L F YKAGM H V ++P
Sbjct: 8 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPT 66
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNW 142
S L+ KE +AVT+++ PP+ + G Y P RS+ VWA L +RR
Sbjct: 67 SPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRR------ 120
Query: 143 CKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLM 202
++ + D+ K + E+ K A VR L TQ + G+ +K L+
Sbjct: 121 -------VLTLPEKVDVDKQMKKV----EEFKDVAVDVRALVATQ-PHLSGIGKKTPELL 168
Query: 203 EIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 261
EI + G ++ E++ +A K + VF +++D+I VTKGKGY+GV+ R+GVT L
Sbjct: 169 EIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTIL 228
Query: 262 PR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
PR K +G R+ IG PA V FT R GQ G+H RTE NK++ K+G G E
Sbjct: 229 PRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAE 282
>sp|A3MWI4|RL3_PYRCJ 50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rpl3p PE=3 SV=1
Length = 338
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 161/295 (54%), Gaps = 25/295 (8%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
K PR GS+G PRKRAA +V+ +P+ + KP L F YKAGM H V ++P
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVDDRPT 62
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTP-RGLR-SLNTVWAQHLSEEVRRRFYKNW 142
S L+ KE +AVT+++ PP+ V V Y P G + ++ W ++RR
Sbjct: 63 SPLYGKEVVKAVTVLDAPPLYVAAVRLYTLDPTNGYKVAVGEAWVSEPPADLRR------ 116
Query: 143 CKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLM 202
++++T++ K+ LE+ + A VRVL TQ R + G+ +K ++
Sbjct: 117 -------VLTLPEKFDTEKQLKA----LEEYRDVAVDVRVLVATQPR-LSGIGKKTPEVL 164
Query: 203 EIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 261
EI V G +I E++++A K + VF +++D+I VTKGKGY+GVV R+GVT L
Sbjct: 165 EIPVGGVPSIDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVVKRFGVTIL 224
Query: 262 PR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE 314
PR K +G R+ IG PA + FT R GQ G+H RTE NK++ K+G G E
Sbjct: 225 PRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE 278
>sp|Q975I1|RL3_SULTO 50S ribosomal protein L3P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl3p PE=3 SV=1
Length = 343
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 164/301 (54%), Gaps = 25/301 (8%)
Query: 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 80
M HRK PR GS G PRKRA+ +++P ++P +L F+GYK GM+HI
Sbjct: 1 MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMID 59
Query: 81 EKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 140
+KP S + KE V++IETPP++ + + YV P+G + T + +SE++ +
Sbjct: 60 DKPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLI-- 117
Query: 141 NWCKSKKKAFTKYSKQYETDEGK-KSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKA 199
+++ T+ E +GK I +L I +RVL TQ + + L +KK
Sbjct: 118 -----QQRKVTRLKIDKEKMKGKLDEINNKLNDI----LYLRVLIATQPKLVPSLGKKKP 168
Query: 200 HLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 259
++E+QV GG I +++Y K + V VF++ ++IDIIGVTKGKG++GVV R+GV
Sbjct: 169 EIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVV 228
Query: 260 RLPR--KTHRGLRKVACIGAWHPARVSFT----VARAGQNGYHHRTEMNKKVYKLGKGGQ 313
LPR K +G RKV G SF+ V + GQ GYH RTE NK++ K+
Sbjct: 229 ELPRWHKHRKGSRKVGARGP------SFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPN 282
Query: 314 E 314
E
Sbjct: 283 E 283
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,250,117
Number of Sequences: 539616
Number of extensions: 5207422
Number of successful extensions: 15206
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 14455
Number of HSP's gapped (non-prelim): 690
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)