Query 038172
Match_columns 323
No_of_seqs 224 out of 1285
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:05:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_C 60S ribosomal protein L 100.0 2E-127 6E-132 932.4 25.6 303 21-323 1-303 (389)
2 3u5e_B 60S ribosomal protein L 100.0 9E-127 3E-131 926.9 28.3 299 21-323 1-299 (387)
3 4a17_B RPL3, ribosomal protein 100.0 2E-125 7E-130 918.6 26.5 297 21-323 1-297 (391)
4 2zkr_b 60S ribosomal protein L 100.0 9E-119 3E-123 877.0 20.0 302 21-323 1-308 (403)
5 3j21_C 50S ribosomal protein L 100.0 4E-111 1E-115 812.6 23.6 280 25-312 3-293 (365)
6 1vq8_B 50S ribosomal protein L 100.0 2E-100 6E-105 737.7 25.0 275 24-318 2-282 (338)
7 2zjr_B 50S ribosomal protein L 100.0 3.6E-62 1.2E-66 445.2 15.6 177 64-314 2-181 (211)
8 3bbo_F Ribosomal protein L3; l 100.0 2.3E-63 7.7E-68 464.3 4.4 186 61-314 41-229 (259)
9 2ftc_C L3MT, MRP-L3, mitochond 100.0 2.3E-60 8E-65 432.6 16.8 184 64-314 2-187 (211)
10 3r8s_D 50S ribosomal protein L 100.0 1.5E-60 5.1E-65 432.9 14.1 182 63-314 1-186 (209)
11 3v2d_E 50S ribosomal protein L 100.0 1.2E-59 4.2E-64 426.1 14.5 177 63-314 1-181 (206)
12 3ejk_A DTDP sugar isomerase; Y 21.8 1.3E+02 0.0045 25.9 5.4 39 71-109 82-126 (174)
No 1
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_C
Probab=100.00 E-value=1.8e-127 Score=932.42 Aligned_cols=303 Identities=86% Similarity=1.401 Sum_probs=294.8
Q ss_pred cCCCCCCCCCCCCCCcCCcccccccCCccccCCCCCCCCCceeeeeeEEeecceEEEeccCCCCCcCCCCcEEEeeEEEE
Q 038172 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 100 (323)
Q Consensus 21 mshrkf~~PR~GSl~f~PrKRa~~~~~~vrs~P~~~~~~~~~l~gf~GyKaGMThv~~~ddr~~s~~~~kev~~pVTVlE 100 (323)
||||||||||||||||||||||++++|+|+|||+||+++||||+||+|||||||||+++||||||+++||||++||||||
T Consensus 1 MshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivE 80 (389)
T 3iz5_C 1 MSHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIE 80 (389)
T ss_dssp CCSCSSCCCCSSCSTTCCCCCCSSSSCCCSCCCCSCSSCTTCBSEEEEEEEEEEEEEECCCCCSSSSCSSCEEEEEEEEE
T ss_pred CCcccCCCCCCCCCCcCccccccccCCCcccCCCCCCCCCceeeeeeeeccCCeEEEEEccCCCCCcCCcEeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEeeeeCCCCcccceEEeccccchhHhhhhccccchhhhhhchhcccccccccchhhhHHHHHHhhccceEE
Q 038172 101 TPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVV 180 (323)
Q Consensus 101 ~pP~~Vvgi~gY~kt~~Gl~~~~~vwa~~l~~~~~Rr~~k~~y~s~~~~~~~~~k~~~~~~~~k~~~~~l~~~~~~~~~i 180 (323)
||||+|+|||||.+||+||++|+||||+|||+||+||||||||+|+++||++|+++|+++++++++++++++|++||++|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~~~g~~~~~~~~~~~~k~~~vi 160 (389)
T 3iz5_C 81 TPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIV 160 (389)
T ss_dssp CCCEEEEEEEEEECCTTCCEEEEEEECSCCSSHHHHTTTTTTCSCCCSSCSCCCCCCSHHHHHHHHHHHHHHHHHHTCEE
T ss_pred CCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcchhhhhhhhhhhhccccccchhhhHHHHHHHHhhhcccEE
Confidence 99999999999999999999999999999999999999999999999999999998876666678889999999999999
Q ss_pred EeehhhhhhhccCcccCCceEEEEEecCCcchhhhhhhhcCCCcccCcccccCCCceEEEEEEecccccccceeeeccCC
Q 038172 181 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260 (323)
Q Consensus 181 rvi~~tq~~k~~gl~~kk~~i~Ei~V~gg~~~~~~~~a~~~lGk~i~v~dvF~~Ge~VDVigvTKGKGFqGvvKRwG~~~ 260 (323)
||||||||+++++|+||||||||||||||++++++|||+++||++|+|+|||++||+|||+|+|||||||||||||||++
T Consensus 161 Rvi~hTqp~l~~~l~qKK~~imEiqVnGgsv~~k~d~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~ 240 (389)
T 3iz5_C 161 RVIAHTQIRKMKGLKQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTR 240 (389)
T ss_dssp EEEEEECGGGCSSSCCCCCEEEEEEBCCSCHHHHHHHHHHHHTSCBCGGGTCCTTCEEEEEEECCEEEEECHHHHHCCCC
T ss_pred EEEEecccccccCCccCCceEEEEEecCCCHHHHHHHHHhcCCCEEehhhccCCCCEEEEEEEecCcccccceeecccCC
Confidence 99999999998359999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccCCCCCCccCCCCCCCCCCCceEEEeeeEEEEEcCCCCccCCCCCCCC
Q 038172 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFD 323 (323)
Q Consensus 261 ~prkthk~~RkvGsiG~~~P~rV~~~v~~aGQmG~h~rTe~NkrI~kIg~~~~~~~~~~t~~d 323 (323)
+|++||++||++||||+|||+||+||++||||||||+|||+||+||+||.++..+|||+||||
T Consensus 241 ~p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~kI~kI~~~g~~~~~a~t~~d 303 (389)
T 3iz5_C 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMGKSGQESHEACTEFD 303 (389)
T ss_dssp CCSSCCSCSSCCSCSSCSSSSSCCTTSCCCEEEECCEEEEEEEECCEEEESSSSCCCSCSSSS
T ss_pred CCccccCCCCCCcccCCCCCCcccCCCccCCCCCCcceeeeeeEEEEeCCccccccccccccc
Confidence 999999999999999999999999999999999999999999999999986666699999998
No 2
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C
Probab=100.00 E-value=9.2e-127 Score=926.92 Aligned_cols=299 Identities=71% Similarity=1.173 Sum_probs=290.2
Q ss_pred cCCCCCCCCCCCCCCcCCcccccccCCccccCCCCCCCCCceeeeeeEEeecceEEEeccCCCCCcCCCCcEEEeeEEEE
Q 038172 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 100 (323)
Q Consensus 21 mshrkf~~PR~GSl~f~PrKRa~~~~~~vrs~P~~~~~~~~~l~gf~GyKaGMThv~~~ddr~~s~~~~kev~~pVTVlE 100 (323)
||||||||||||||||||||||++++|+|+|||+||+++||||+||+|||||||||+++||||||+++||||++||||||
T Consensus 1 mshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEvv~~VTivE 80 (387)
T 3u5e_B 1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVD 80 (387)
T ss_dssp -CCCSSCCCCSSCGGGCCCCCCSCSSCCCCCCCCCCTTSCCCCSEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEE
T ss_pred CCcccCCCCCCCCCccCccccccccCCCcccCCCCCCCCCceeeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEeeeeCCCCcccceEEeccccchhHhhhhccccchhhhhhchhcccccccccchhhhHHHHHHhhccceEE
Q 038172 101 TPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVV 180 (323)
Q Consensus 101 ~pP~~Vvgi~gY~kt~~Gl~~~~~vwa~~l~~~~~Rr~~k~~y~s~~~~~~~~~k~~~~~~~~k~~~~~l~~~~~~~~~i 180 (323)
||||+|+|||||.+||+||++|+||||+|||+||+||||||||+|+++||++|+++|+++. +++++++++|++||++|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~~~--~~~~~~~~~~~k~~~vi 158 (387)
T 3u5e_B 81 TPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDG--AGIERELARIKKYASVV 158 (387)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCTTTSCCCTTTTTGGGGSSSS--HHHHHHHHHHHHSCSEE
T ss_pred cCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcccchhhhhhhhhhcccccchh--HHHHHHHHHhhhcccEE
Confidence 9999999999999999999999999999999999999999999999999999998885443 57789999999999999
Q ss_pred EeehhhhhhhccCcccCCceEEEEEecCCcchhhhhhhhcCCCcccCcccccCCCceEEEEEEecccccccceeeeccCC
Q 038172 181 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260 (323)
Q Consensus 181 rvi~~tq~~k~~gl~~kk~~i~Ei~V~gg~~~~~~~~a~~~lGk~i~v~dvF~~Ge~VDVigvTKGKGFqGvvKRwG~~~ 260 (323)
||||||||++++ |+||||||||||||||++++++|||+++||++|+|+|||++||+|||+|+|||||||||||||||++
T Consensus 159 Rvi~hTqp~l~~-l~qKK~~imEiqV~Ggsv~~k~~~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~ 237 (387)
T 3u5e_B 159 RVLVHTQIRKTP-LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKK 237 (387)
T ss_dssp EEEEECCGGGSS-CSCCSCCEEEEECCSSCHHHHHHHHHHTTTCEECGGGTCCTTCEEEEEEECCCCCEECHHHHHCCCC
T ss_pred EEEEeccccccC-ccccCceeEEEEecCCCHHHHHHHHHhccCCEechHHhccCCCEEEEEEEEcCccceeeeeecccCC
Confidence 999999999876 9999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccCCCCCCccCCCCCCCCCCCceEEEeeeEEEEEcCCCCccCCCCCCCC
Q 038172 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFD 323 (323)
Q Consensus 261 ~prkthk~~RkvGsiG~~~P~rV~~~v~~aGQmG~h~rTe~NkrI~kIg~~~~~~~~~~t~~d 323 (323)
+|++||++||++||||+|||+||+||++||||||||+|||+||+||+||.+++. |||+||||
T Consensus 238 ~p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~~~~-~~~~t~~d 299 (387)
T 3u5e_B 238 LPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDE-ANGATSFD 299 (387)
T ss_dssp CCTTCTTCSSSCSCCCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEECCSSCS-CSSCCTTT
T ss_pred CCccccCCCCCCcccCCCCCCcccCCCccCCCCCCceEEEeccEEEEEcCCccc-cccccccc
Confidence 999999999999999999999999999999999999999999999999997766 99999998
No 3
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B
Probab=100.00 E-value=2e-125 Score=918.56 Aligned_cols=297 Identities=60% Similarity=1.069 Sum_probs=288.4
Q ss_pred cCCCCCCCCCCCCCCcCCcccccccCCccccCCCCCCCCCceeeeeeEEeecceEEEeccCCCCCcCCCCcEEEeeEEEE
Q 038172 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 100 (323)
Q Consensus 21 mshrkf~~PR~GSl~f~PrKRa~~~~~~vrs~P~~~~~~~~~l~gf~GyKaGMThv~~~ddr~~s~~~~kev~~pVTVlE 100 (323)
||||||||||||||||||||||++++|+|+|||+||+++||||+||+|||||||||+++||||||+++||||++||||||
T Consensus 1 mshRKf~~PR~GSlgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivE 80 (391)
T 4a17_B 1 MSHRKFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGFKAGMTHILREVDRSGSRHNKKEVVEAVTVIE 80 (391)
T ss_dssp -CCCSSCCCCSSCGGGCSCCCCSCSSCCCSSCCCCCSSSSCEECEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEE
T ss_pred CCcccCCCCCCCCCCcCccccccccCCCcccCCCCCCCCCceEeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEe
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEeeeeCCCCcccceEEeccccchhHhhhhccccchhhhhhchhcccccccccchhhhHHHHHHhhccceEE
Q 038172 101 TPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVV 180 (323)
Q Consensus 101 ~pP~~Vvgi~gY~kt~~Gl~~~~~vwa~~l~~~~~Rr~~k~~y~s~~~~~~~~~k~~~~~~~~k~~~~~l~~~~~~~~~i 180 (323)
||||+|+|||||.+||+||++|+||||+|||+||+||||||||+|.+.||++|+++|++ +++++++++|++||++|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~----~~~~~~~~~~~k~~~vi 156 (391)
T 4a17_B 81 CPPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYKNWANSNKKAFTHHEKNFDQ----KAQDLLLKRIEKYCSVV 156 (391)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCSTTSCCCTTHHHHHTCCH----HHHHHHHHHHHHHCSEE
T ss_pred CCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhcccccccchhhhhhhhhhcch----hHHHHHHHHhhhcccEE
Confidence 99999999999999999999999999999999999999999999999999999988852 56788999999999999
Q ss_pred EeehhhhhhhccCcccCCceEEEEEecCCcchhhhhhhhcCCCcccCcccccCCCceEEEEEEecccccccceeeeccCC
Q 038172 181 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260 (323)
Q Consensus 181 rvi~~tq~~k~~gl~~kk~~i~Ei~V~gg~~~~~~~~a~~~lGk~i~v~dvF~~Ge~VDVigvTKGKGFqGvvKRwG~~~ 260 (323)
||||||||++++ |+||||||||||||||++++++|||+++||++|+|+|||++||+|||+|+|||||||||||||||++
T Consensus 157 Rvi~hTqp~l~~-l~qKK~~imEiqV~GGsv~~k~~~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~ 235 (391)
T 4a17_B 157 RVIAHTNMSKLN-LRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFGVKH 235 (391)
T ss_dssp EEEEEECGGGSC-SSCCCCEEEEEEEECSCHHHHHHHHHHHTTCEECHHHHCCTTCEEEEEEECCCCCEECHHHHHCCCC
T ss_pred EEEEeccccccC-cCCCCceEEEEEecCCCHHHHHHHHHhhcCCEEehhHhcCCCCEEEEEEEEeCcccceeeeecccCC
Confidence 999999999876 9999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccCCCCCCccCCCCCCCCCCCceEEEeeeEEEEEcCCCCccCCCCCCCC
Q 038172 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFD 323 (323)
Q Consensus 261 ~prkthk~~RkvGsiG~~~P~rV~~~v~~aGQmG~h~rTe~NkrI~kIg~~~~~~~~~~t~~d 323 (323)
+|++||++||++||||+|||+||+||++||||||||+|||+||+||+||.+++. |||+||||
T Consensus 236 ~p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~~~~-~~a~t~~d 297 (391)
T 4a17_B 236 LQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTETNKKVYRVGKGDDA-SNASTAGD 297 (391)
T ss_dssp CCTTCSSCSSSCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEECTTCS-STTCCTTT
T ss_pred CCcccccCCCCCcccCCCCCCcccCCCccCCCCCCceEEEeccEEEEEcCCccc-cccccccc
Confidence 999999999999999999999999999999999999999999999999997766 99999998
No 4
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.3e-119 Score=876.95 Aligned_cols=302 Identities=69% Similarity=1.183 Sum_probs=287.8
Q ss_pred cCCCCCCCCCCCCCCcCCcccccccCCccccCCCCCCCCCceeeeeeEEeecceEEEeccCCCCCcCCCCcEEEeeEEEE
Q 038172 21 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 100 (323)
Q Consensus 21 mshrkf~~PR~GSl~f~PrKRa~~~~~~vrs~P~~~~~~~~~l~gf~GyKaGMThv~~~ddr~~s~~~~kev~~pVTVlE 100 (323)
||||||||||||||||+|||||++++|+|||||+||++++|||+|||||||||||||+++|||||+++|+|+++||||||
T Consensus 1 MshRKf~~PR~GSlgf~PRKRa~~~~~rvrswP~dd~~~~~~ltgflGyKaGMThi~~~~drpgS~~~~kev~~pVTVlE 80 (403)
T 2zkr_b 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVE 80 (403)
T ss_dssp ------CCCCSSCGGGCSCCCCSCSSCCCSCCCCSCSSCCBGGGSCEEEEEEEEEEEEECCCTTSTTCSCEEEEEEEEEE
T ss_pred CCccccCCCCccccccCcccccccCCCCcccCCCcCCCCCceeeEEEEEccCCeEEEeeccCCCCccCCCceEEEEEEEE
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEeeeeCCCCcccceEEeccccchhHhhhhccccchhhhhhchhcccccccccchhhhHHHHHHhhccceEE
Q 038172 101 TPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVV 180 (323)
Q Consensus 101 ~pP~~Vvgi~gY~kt~~Gl~~~~~vwa~~l~~~~~Rr~~k~~y~s~~~~~~~~~k~~~~~~~~k~~~~~l~~~~~~~~~i 180 (323)
+|||+|+|++||..|+.||++++||||+||+++|+||||+|||.+.+++|..+.++|++++..++++++|+.+++||++|
T Consensus 81 tpP~~VvgvrGY~~~~~Gl~~~~~vwa~~ls~e~~Rr~~kn~~~~~kk~~~~~~kk~~~~~~~~~i~~~l~~~~k~~~~i 160 (403)
T 2zkr_b 81 TPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVI 160 (403)
T ss_dssp CCCBEEEEEEEEEEETTEEEEEEEEECSCCCGGGGCCCCCCSSCCSCCCCCCCCCCCCCHHHHHHHHHHHHHHSCCCSSC
T ss_pred cCCCEEEEEEeEEEecCCcccceEEeeccCChHHhhhhhcccccchhhhhhhcccccccchhhhhHHHHHHHhhccceEE
Confidence 99999999999999999999999999999999999999999999999999999988877777789999999999999999
Q ss_pred EeehhhhhhhccCcccCCceEEEEEecCCcchhhhhhhhcCCCcccCcccccCCCceEEEEEEecccccccceeeeccCC
Q 038172 181 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 260 (323)
Q Consensus 181 rvi~~tq~~k~~gl~~kk~~i~Ei~V~gg~~~~~~~~a~~~lGk~i~v~dvF~~Ge~VDVigvTKGKGFqGvvKRwG~~~ 260 (323)
|||+||||++++ |+|||+||+||||+|++++++++||++.||++|+|+|||++||+|||+|+|||||||||||||||++
T Consensus 161 Rvi~hTq~~~~~-l~qkk~~l~E~~v~g~~~~~k~~~A~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvkRwg~~~ 239 (403)
T 2zkr_b 161 RVIAHTQMRLLP-LRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239 (403)
T ss_dssp EEEEECCGGGSS-CSCCCCCCEEEEBCSSSHHHHHHHHHHHHHSCBCSTTTCCSSCCCCEEEECCEEEEECHHHHHCCCC
T ss_pred EEEEEecccccc-cccCCCEEEEEEecCcchhhhhhhhhccCCcEEchhhhccCCceEEEEEeecCCcceeceeecCcCC
Confidence 999999999997 9999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccCCCCCCccCCCCCCCCCCCceEEEeeeEEEEEcCCCC------ccCCCCCCCC
Q 038172 261 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQ------ESHTGITEFD 323 (323)
Q Consensus 261 ~prkthk~~RkvGsiG~~~P~rV~~~v~~aGQmG~h~rTe~NkrI~kIg~~~~------~~~~~~t~~d 323 (323)
+|+|||++||++||||+|||+||+||++||||||||+|||+||+||+||.+++ ..|+|+||||
T Consensus 240 ~p~ktH~~hR~~GsiG~~~P~RV~~g~~maGqmG~~~rT~~NlkI~rI~~~~~~~~~k~~~~~~~t~~d 308 (403)
T 2zkr_b 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYD 308 (403)
T ss_dssp CCSSTTTTTTCCSCSSCSSSCSCCTTSCCCEEEECCEEEESCCCEEEEECCCCCCSSCCCCCTTCCCCC
T ss_pred CCcccccccCCCcccCCCCCCeECCCCcCCCCCCcceEEecCCEEEEECCccccccccccccccccccc
Confidence 99889999999999999999999999999999999999999999999999865 3589999998
No 5
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.9e-111 Score=812.59 Aligned_cols=280 Identities=41% Similarity=0.639 Sum_probs=256.6
Q ss_pred CCCCCCCCCCCcCCcccccccCCccccCCCCCCCCCceeeeeeEEeecceEEEeccCCCCCcCCCCcEEEeeEEEEeCCe
Q 038172 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPM 104 (323)
Q Consensus 25 kf~~PR~GSl~f~PrKRa~~~~~~vrs~P~~~~~~~~~l~gf~GyKaGMThv~~~ddr~~s~~~~kev~~pVTVlE~pP~ 104 (323)
||||||||||||+|||||++++|+|+|||+|| +|||+||+|||||||||+++|||||| ++||||++||||||||||
T Consensus 3 ~~~~PR~GSlgf~PrKRa~~~~~rvks~Pkdd---~~~L~~F~GYKAGMTHiv~~~drpgS-~~~kEv~~~VTivEtPPm 78 (365)
T 3j21_C 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKET---EVRMLGFAGYKAGMTHILMIDDEPGL-TNGKEIFMPVTIIETPPL 78 (365)
T ss_dssp SCCCCCSSCSSSCSCCCCSCSSCCCSCCCCCC---SSEECCEEEEEEEEEEEEEESCSCSS-CSSSEEEEEEEEEECCCE
T ss_pred CCCCCCCCCCccCccccccccCCCccccCCCC---CceeeeeeeeccCCeEEEEEcCCCCC-cCCCEeeeeeEEEeCCCe
Confidence 89999999999999999999999999999997 89999999999999999999999999 999999999999999999
Q ss_pred EEEEEEeeeeCCCCcccceEEeccccchhHhhhhc-cccchhhhhhch--------hcccccccccchhhhHHHHHHhhc
Q 038172 105 MVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFY-KNWCKSKKKAFT--------KYSKQYETDEGKKSIQAQLEKIKK 175 (323)
Q Consensus 105 ~Vvgi~gY~kt~~Gl~~~~~vwa~~l~~~~~Rr~~-k~~y~s~~~~~~--------~~~k~~~~~~~~k~~~~~l~~~~~ 175 (323)
+|+|||||.+||+||++|+||||+|||+++.|+|| ++|| ..++||. +|+++| +++..+++++++++|++
T Consensus 79 ~vvgi~gY~~tp~Gl~~~~~vwa~~l~~~~~~~~y~~~~~-k~~~~~~~e~~Rr~~~~~k~~-~~~~~~~~~~~~~~~~k 156 (365)
T 3j21_C 79 RVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKP-KPKMTFYKLLERRIATLPKNY-TQEMFEQKLGQLEDMIK 156 (365)
T ss_dssp EEEEEEEEEECSSSEEEEEEECCCCCCCCSCCCCCSSSCC-CCCCCSCSHHHHSSCCCCSCH-HHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEeecCCCceeEEEEccccccchhhccccccccc-cccccchhhhhhhhhcccccc-cccchhhHHHHHHHhhc
Confidence 99999999999999999999999999977766665 2222 1223322 344555 23334567899999998
Q ss_pred --cceEEEeehhhhhhhccCcccCCceEEEEEecCCcchhhhhhhhcCCCcccCcccccCCCceEEEEEEecccccccce
Q 038172 176 --YASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVV 253 (323)
Q Consensus 176 --~~~~irvi~~tq~~k~~gl~~kk~~i~Ei~V~gg~~~~~~~~a~~~lGk~i~v~dvF~~Ge~VDVigvTKGKGFqGvv 253 (323)
||++|||||||||++++ | ||||||||||||||+++++||||++.||++|+++|+|++||+|||+|+||||||||||
T Consensus 157 ~~~~~~iRvi~hTqp~~~~-l-qKK~~imEiqV~Ggsv~~k~~~a~~~lG~~i~v~~vF~~ge~VDV~GvTKGKGFqGvv 234 (365)
T 3j21_C 157 EGEIVDVRAIVATQPWVIK-L-KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPV 234 (365)
T ss_dssp CTTEEEEEEEEEECCSSCS-S-CCSCCEEEEEEECSSHHHHHHHHHHHTTCBCCHHHHCCTTCEEEEEEECCCCEEECHH
T ss_pred cCcceEEEEEEeccccccc-c-ccCccEEEEEecCCCHHHHHHHHHhhcCcEEechhccCCCCEEEEEEEeeccccccce
Confidence 99999999999999766 9 9999999999999999999999999999999998899999999999999999999999
Q ss_pred eeeccCCCCCCCCCCCCCCccccCCCCCCccCCCCCCCCCCCceEEEeeeEEEEEcCCC
Q 038172 254 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGG 312 (323)
Q Consensus 254 KRwG~~~~prkthk~~RkvGsiG~~~P~rV~~~v~~aGQmG~h~rTe~NkrI~kIg~~~ 312 (323)
|||||+++|++||++||++||||+|||+||+||++||||||||+||++||+||+||.+.
T Consensus 235 KRwgf~~~p~~hg~~hR~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~~ 293 (365)
T 3j21_C 235 KRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENG 293 (365)
T ss_dssp HHHCCCCCSSCCSSCSSCCCCSCCSSSCSCCSSSCCCEEESSCEEEEEEEEEEEEEEES
T ss_pred eeccCCCCCCCCCCCCCCCcccCCCCCCcccCCCccCCccCcceeEecCCEEEEEcCCC
Confidence 99999999988888899999999999999999999999999999999999999999864
No 6
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Probab=100.00 E-value=1.8e-100 Score=737.71 Aligned_cols=275 Identities=35% Similarity=0.630 Sum_probs=251.9
Q ss_pred CCCCCCCCCCCCcCCcccccccCCccccCCCCCCCCCceeeeeeEEeecceEEEeccCCCCCcCCCCcEEEeeEEEEeCC
Q 038172 24 RKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPP 103 (323)
Q Consensus 24 rkf~~PR~GSl~f~PrKRa~~~~~~vrs~P~~~~~~~~~l~gf~GyKaGMThv~~~ddr~~s~~~~kev~~pVTVlE~pP 103 (323)
|||||||||||||+|||||++++|+|||||+|| ++|+|+||||||+||||||++||+|+|+++|+|+++||||||+||
T Consensus 2 ~k~~~PR~Gsl~f~PrkRa~~~~~rv~s~P~~~--~~~~l~g~lG~K~GMT~i~~~~g~~~s~~~gke~~vpVTVie~~p 79 (338)
T 1vq8_B 2 PQPSRPRKGSLGFGPRKRSTSETPRFNSWPSDD--GQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPP 79 (338)
T ss_dssp CCCCCCCSSCSSSCSCCCCSCSSCCCSCCCCCC--SSCEECCEEEEEEEEEEEEEECCCTTCTTTTSEEEEEEEEEECCC
T ss_pred CCCCCCCCCcCccCccccccccCCCcccCCCCC--CCceEEEEEEEecCCEEEEeECCccCCccCCceeEEEEEEEEeCC
Confidence 899999999999999999999999999999998 689999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeeeCCCCcccceEEeccccchhHhhhhccccchhhhhhchhcccccccccchhhhHHHHHHhhc--cceEEE
Q 038172 104 MMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKK--YASVVR 181 (323)
Q Consensus 104 ~~Vvgi~gY~kt~~Gl~~~~~vwa~~l~~~~~Rr~~k~~y~s~~~~~~~~~k~~~~~~~~k~~~~~l~~~~~--~~~~ir 181 (323)
|+|+|+++|.+|++||+..+++||+++++++.|+|+|+. +++ .++....++++++ +|++||
T Consensus 80 ~~V~~vk~~~~dgy~lq~~~~v~a~~~~~~~~r~~~kp~------~~~-----------~~~~~~~~~~~~~~~~~~~ir 142 (338)
T 1vq8_B 80 MRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPE------DHD-----------PDAAEEQIRDAHEAGDLGDLR 142 (338)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCCS------SCC-----------HHHHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEEEeeeccCceeEeeeeEeccccchhhcccccccc------ccc-----------chhhHHHHHhhhcccceeEEE
Confidence 999999999999999999999999999999999998653 111 0122345555554 999999
Q ss_pred eehhhhhhhccCcccCCceEEEEEecCCcchhhhhhhhcCC--CcccCcccccCCCceEEEEEEecccccccceeeeccC
Q 038172 182 VLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF--EKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 259 (323)
Q Consensus 182 vi~~tq~~k~~gl~~kk~~i~Ei~V~gg~~~~~~~~a~~~l--Gk~i~v~dvF~~Ge~VDVigvTKGKGFqGvvKRwG~~ 259 (323)
+|+||||+++.|+++|+++|+||||+|+++++++|||.++| |++|+++|+|++||+|||+|+|||||||||||||||+
T Consensus 143 ~i~~tqp~k~agv~~kk~~l~E~rv~~~~~~~k~~~a~~~l~~G~~i~v~~vF~~Gq~VDV~gvTKGKGFqGv~KRwgf~ 222 (338)
T 1vq8_B 143 LITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQ 222 (338)
T ss_dssp EEEECCGGGCTTSCCCSCCEEEEEEECSCHHHHHHHHHHHHHHTCEECSTTTCCTTCEEEEEEECCCCCEECHHHHHCCC
T ss_pred EEEEeccccccCCCccCCEEEEEEecCcchhhhhhhhhhccCCCcEEchhhcccCCCceeeEEEEeCCCceeeeeecCCC
Confidence 99999999954599889999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred CCCCC--CCCCCCCCccccCCCCCCccCCCCCCCCCCCceEEEeeeEEEEEcCCCCccCCC
Q 038172 260 RLPRK--THRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTG 318 (323)
Q Consensus 260 ~~prk--thk~~RkvGsiG~~~P~rV~~~v~~aGQmG~h~rTe~NkrI~kIg~~~~~~~~~ 318 (323)
++|++ +|++||++||||+|||+||+||++||||||||+||++||+||+||++. +|||.
T Consensus 223 ~~p~sHG~sk~hR~~GsiG~~~P~RV~~g~kmaGqmG~~~rT~~Nl~I~kId~e~-~i~p~ 282 (338)
T 1vq8_B 223 KRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGD-EPTVD 282 (338)
T ss_dssp CCCGGGGSSSCSSCCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEEES-SSCCT
T ss_pred CCCcccCCCccCCCCcccCCCCCCeeccCCcCCCCcCCceEEEeccEEEEcCCCC-ccccC
Confidence 99964 457899999999999999999999999999999999999999999653 35664
No 7
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ...
Probab=100.00 E-value=3.6e-62 Score=445.20 Aligned_cols=177 Identities=25% Similarity=0.369 Sum_probs=157.5
Q ss_pred eeeeEEeecceEEEeccCCCCCcCCCCcEEEeeEEEEeCCeEEEEEEeeeeCCCCcccceEEeccccchhHhhhhccccc
Q 038172 64 TAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWC 143 (323)
Q Consensus 64 ~gf~GyKaGMThv~~~ddr~~s~~~~kev~~pVTVlE~pP~~Vvgi~gY~kt~~Gl~~~~~vwa~~l~~~~~Rr~~k~~y 143 (323)
+||||||+||||||++ + +++||||||+|||+|+++ +|.+ +|+|
T Consensus 2 ~g~lg~K~GMT~i~~~-g----------~~~pVTVie~~p~~V~~~----kt~~----------------------~dgy 44 (211)
T 2zjr_B 2 KGILGTKIGMTQIWKN-D----------RAIPVTVVLAGPCPIVQR----KTAQ----------------------TDGY 44 (211)
T ss_dssp CEEEEEEEEEEEEEET-T----------EEEEEEEEECCCEEEEEE----ECTT----------------------TTSS
T ss_pred eeEeEEecCcEeEEeC-C----------CEEEEEEEEeCCcEEEEE----ecee----------------------cCCC
Confidence 6999999999999998 5 999999999999999999 6666 8999
Q ss_pred hhhhhhchhcccccccccchhhhHHHHHHhhccceEEEeehhhhhhhccCcccCCceEEEEEecCCcchhhhhhhhcCCC
Q 038172 144 KSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 223 (323)
Q Consensus 144 ~s~~~~~~~~~k~~~~~~~~k~~~~~l~~~~~~~~~irvi~~tq~~k~~gl~~kk~~i~Ei~V~gg~~~~~~~~a~~~lG 223 (323)
.|+|++|.+.. .+.++++.. +||++++ ++ ++++|+||||++ .+|
T Consensus 45 ~avqvg~~~~~--------~~~~tkp~~--------------g~~~kag-v~-~k~~l~Efrv~~------------~~G 88 (211)
T 2zjr_B 45 EAVQIGYAPKA--------ERKVNKPMQ--------------GHFAKAG-VA-PTRILREFRGFA------------PDG 88 (211)
T ss_dssp CEEEEECSCCC--------GGGCCHHHH--------------HHHHTTT-CC-CCSCEEEETTCC------------CSS
T ss_pred cEEEEEEEEec--------ccccChhhh--------------hhHHHcC-CC-CCcEEEEEEcCC------------cCC
Confidence 99999987532 234454444 5899986 98 799999999865 289
Q ss_pred cccCcccccCCCceEEEEEEecccccccceeeeccCCCCCC--CCCCCCCCccccC-CCCCCccCCCCCCCCCCCceEEE
Q 038172 224 KQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK--THRGLRKVACIGA-WHPARVSFTVARAGQNGYHHRTE 300 (323)
Q Consensus 224 k~i~v~dvF~~Ge~VDVigvTKGKGFqGvvKRwG~~~~prk--thk~~RkvGsiG~-~~P~rV~~~v~~aGQmG~h~rTe 300 (323)
++|++ |+|++||+|||+|+|||||||||||||||+++|+. +|++||++||||+ |+|+|||||++||||||||+||+
T Consensus 89 ~~i~v-~~F~~G~~VDV~g~tKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GsiG~~~~PgRV~kgkkmaG~mG~~~~T~ 167 (211)
T 2zjr_B 89 DSVNV-DIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTV 167 (211)
T ss_dssp EECST-TTSCTTCEEEEEEECCEEEEECHHHHHCCCCCCSSSSCSSCSCSCCCCCCSSTTCSCCTTCCCCEEEECCEEEE
T ss_pred CEeEh-hhhcCCCceEEEEEEcCCcceeceeecCCCCCCcccCCCCCCCCCcccCCCCCCCcCcCCCccCCCCCCccEeE
Confidence 99999 59999999999999999999999999999999953 2377999999996 79999999999999999999999
Q ss_pred eeeEEEEEcCCCCc
Q 038172 301 MNKKVYKLGKGGQE 314 (323)
Q Consensus 301 ~NkrI~kIg~~~~~ 314 (323)
+||+||+||++.|.
T Consensus 168 ~Nl~I~~id~e~nl 181 (211)
T 2zjr_B 168 QNLEVVEIRAGENL 181 (211)
T ss_dssp EEEEEEEEETTTTE
T ss_pred eccEEEEEcCCCCE
Confidence 99999999998874
No 8
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.3e-63 Score=464.32 Aligned_cols=186 Identities=19% Similarity=0.276 Sum_probs=112.4
Q ss_pred ceeeeeeEEeecceEEEeccCCCCCcCCCCcEEEeeEEEEeCCeEE-EEEEeeeeCCCCcccceEEeccccchhHhhhhc
Q 038172 61 CRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMMV-VGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFY 139 (323)
Q Consensus 61 ~~l~gf~GyKaGMThv~~~ddr~~s~~~~kev~~pVTVlE~pP~~V-vgi~gY~kt~~Gl~~~~~vwa~~l~~~~~Rr~~ 139 (323)
++++||||||+||||||++|| +++||||||+|||+| +++ +|.+
T Consensus 41 ~~~~G~lG~K~GMT~if~e~G----------~~vPVTVle~~p~~Vv~q~----kt~e---------------------- 84 (259)
T 3bbo_F 41 EAGVGVMATKLGMMSFFEESG----------TVVPVTVVGFREGNIVTQI----KTEA---------------------- 84 (259)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeEEEEEecCcEEEEccCC----------eEEEEEEEEECCCEEEEEE----eecC----------------------
Confidence 489999999999999999998 899999999999999 555 6777
Q ss_pred cccchhhhhhchhcccccccccchhhhHHHHHHhhccceEEEeehhhhhhhccCcccCCceEEEEEecCCcchhhhhhhh
Q 038172 140 KNWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAY 219 (323)
Q Consensus 140 k~~y~s~~~~~~~~~k~~~~~~~~k~~~~~l~~~~~~~~~irvi~~tq~~k~~gl~~kk~~i~Ei~V~gg~~~~~~~~a~ 219 (323)
+|+|+|+|++|.+..+ +.+++... +||++++ +. ++++|+||||+. +++ +
T Consensus 85 ~dGy~Avqvg~~~~k~--------k~~tKp~~--------------Ghf~kag-v~-~kr~l~Efrv~~--~~~-~---- 133 (259)
T 3bbo_F 85 TDGYNAVQVGYRRVRD--------RKLTKPEM--------------GHLEKSG-II-PLRHLQEFRLQS--IDG-F---- 133 (259)
T ss_dssp --------------CC--------SSCCHHHH--------------TTCSSCC-CC-CSSCCCCCCSCC--CCT-T----
T ss_pred CCCcEEEEEEEeeech--------hhCChhhh--------------hhHHHcC-CC-CCcEEEEEecCC--hhh-c----
Confidence 8899999999975432 33455544 5899987 85 799999999974 223 4
Q ss_pred cCCCcccCcccccCCCceEEEEEEecccccccceeeeccCCCCCCC-CCCCCCCccccCC-CCCCccCCCCCCCCCCCce
Q 038172 220 GFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT-HRGLRKVACIGAW-HPARVSFTVARAGQNGYHH 297 (323)
Q Consensus 220 ~~lGk~i~v~dvF~~Ge~VDVigvTKGKGFqGvvKRwG~~~~prkt-hk~~RkvGsiG~~-~P~rV~~~v~~aGQmG~h~ 297 (323)
.+|++|++++||++||+|||+|+|||||||||||||||+++|+.| |++||++||||+| +|+|||||++||||||||+
T Consensus 134 -~~G~~i~v~~vF~~Gq~VDV~G~TKGKGFqGv~KRwgf~g~p~sHGsk~hR~~GSiG~~~~PgRV~kGkkMaGqmG~~~ 212 (259)
T 3bbo_F 134 -EVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTK 212 (259)
T ss_dssp -TTCCCCSSCSSSCSSSCCCCCCBCCCCSSCCSSSSSCCCCCCSSSCSSTTTSCCCCSCSSCCTTTTTTSCCCCCCCCCB
T ss_pred -ccccEeehhheecCCCEEEEEEEecCCcceeeeeecCcCCCCCcCCCCCCCCCcccCCCCCCCcCcCCCccCCCCCCce
Confidence 499999999779999999999999999999999999999999644 4889999999999 9999999999999999999
Q ss_pred EEEeeeEEEEEcCCCCc
Q 038172 298 RTEMNKKVYKLGKGGQE 314 (323)
Q Consensus 298 rTe~NkrI~kIg~~~~~ 314 (323)
||++||+||+||++.|.
T Consensus 213 ~T~~Nl~IvrId~e~nl 229 (259)
T 3bbo_F 213 RKIRKLKIVKIDDQLNI 229 (259)
T ss_dssp CCCCCCCEEEEETTTTE
T ss_pred EEEeccEEEEECCCCCE
Confidence 99999999999998774
No 9
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=2.3e-60 Score=432.61 Aligned_cols=184 Identities=17% Similarity=0.253 Sum_probs=163.1
Q ss_pred eeeeEEeecceEEEeccCCCCCcCCCCcEEEeeEEEEeCCeEEEEEEeeeeCCCCcccceEEeccccchhHhhhhccccc
Q 038172 64 TAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWC 143 (323)
Q Consensus 64 ~gf~GyKaGMThv~~~ddr~~s~~~~kev~~pVTVlE~pP~~Vvgi~gY~kt~~Gl~~~~~vwa~~l~~~~~Rr~~k~~y 143 (323)
+|+||.|+|||+||+++| ..+||||||+.||+|+++ +|++- ++|+|
T Consensus 2 ~Gllg~KiGMt~if~~~G----------~~ipvTVl~~~~~~V~q~----kt~e~--------------------~~dGY 47 (211)
T 2ftc_C 2 VGLIALKLGMMPLWTKDG----------QKHVVTLLQVQDCHVLKY----TSKEN--------------------CNGKM 47 (211)
T ss_pred ceEEEEEcceEEEECCCC----------cEEEEEEEEEcCCEEEEE----Ecccc--------------------CCCCE
Confidence 699999999999999999 899999999999999999 88880 15999
Q ss_pred hhhhhhchhcccccccccchhhhHHHHHHhhccceEEEeehhhhhhhccCcccCCceEEEEEecCCcchhhhhhhhcCCC
Q 038172 144 KSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 223 (323)
Q Consensus 144 ~s~~~~~~~~~k~~~~~~~~k~~~~~l~~~~~~~~~irvi~~tq~~k~~gl~~kk~~i~Ei~V~gg~~~~~~~~a~~~lG 223 (323)
+|+|+||.+.++ +.+++++. +||++++ ++ ++++|+||++++.+ .++ +|
T Consensus 48 ~Avqvg~~~~~~--------~~~~kp~~--------------Ghf~kag-v~-pkr~l~Efrv~~~~---~~~-----~G 95 (211)
T 2ftc_C 48 ATLSVGGKTVSR--------FRKATSIL--------------EFYRELG-LP-PKQTVKIFNITDNA---AIK-----PG 95 (211)
T ss_pred EEEEEeeeeccc--------ccCChhHh--------------hhHHHcC-CC-cccEEEEEEeCCCC---ccc-----cC
Confidence 999999985542 33444443 4999987 88 79999999998753 354 99
Q ss_pred cccCcccccCCCceEEEEEEecccccccceeeeccCCCCCC--CCCCCCCCccccCCCCCCccCCCCCCCCCCCceEEEe
Q 038172 224 KQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK--THRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEM 301 (323)
Q Consensus 224 k~i~v~dvF~~Ge~VDVigvTKGKGFqGvvKRwG~~~~prk--thk~~RkvGsiG~~~P~rV~~~v~~aGQmG~h~rTe~ 301 (323)
++|+++ +|++||+|||+|+|||||||||||||||+++|+. +|++||++||||+|+|+|||+|++||||||||+||++
T Consensus 96 ~~l~v~-~F~~Gq~VDV~g~sKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GSiG~~~PgRV~kgkkmaG~mG~~~~T~~ 174 (211)
T 2ftc_C 96 TPLYAA-HFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGDIGRVWPGTKMPGKMGNIYRTEY 174 (211)
T ss_pred CEEEhH-hccCCceEEEEEEEcCCcceeceeecCCCCCCcccCCCCCCCCCcccCCCCCCeecCCcccCCCCCCeeEEEe
Confidence 999995 9999999999999999999999999999999953 2378999999999999999999999999999999999
Q ss_pred eeEEEEEcCCCCc
Q 038172 302 NKKVYKLGKGGQE 314 (323)
Q Consensus 302 NkrI~kIg~~~~~ 314 (323)
||+|++||.+.|.
T Consensus 175 Nl~I~~id~e~nl 187 (211)
T 2ftc_C 175 GLKVWRINTKHNI 187 (211)
T ss_pred ccEEEEECCCCCE
Confidence 9999999998775
No 10
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=100.00 E-value=1.5e-60 Score=432.89 Aligned_cols=182 Identities=24% Similarity=0.327 Sum_probs=164.5
Q ss_pred eeeeeEEeecceEEEeccCCCCCcCCCCcEEEeeEEEEeCCeEEEEEEeeeeCCCCcccceEEeccccchhHhhhhcccc
Q 038172 63 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNW 142 (323)
Q Consensus 63 l~gf~GyKaGMThv~~~ddr~~s~~~~kev~~pVTVlE~pP~~Vvgi~gY~kt~~Gl~~~~~vwa~~l~~~~~Rr~~k~~ 142 (323)
|+|+||.|+|||+||+++| ..+||||||+.||+|+++ +|.+ +|+
T Consensus 1 m~Glig~KiGMt~if~~~G----------~~ipvTVl~~~~~~V~q~----kt~e----------------------~dG 44 (209)
T 3r8s_D 1 MIGLVGKKVGMTRIFTEDG----------VSIPVTVIEVEANRVTQV----KDLA----------------------NDG 44 (209)
T ss_dssp CCCEEEEEEEEEEEECTTC----------CEEEEEEEECCCEEEEEE----ECHH----------------------HHS
T ss_pred CcEEEEEEeceeEEECCCC----------cEEEEEEEEecCCEEEEE----EccC----------------------CCC
Confidence 4699999999999999999 899999999999999999 9999 999
Q ss_pred chhhhhhchhcccccccccchhhhHHHHHHhhccceEEEeehhhhhhhccCcccCCceEEEEEecCCcchhhhhhhhcCC
Q 038172 143 CKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF 222 (323)
Q Consensus 143 y~s~~~~~~~~~k~~~~~~~~k~~~~~l~~~~~~~~~irvi~~tq~~k~~gl~~kk~~i~Ei~V~gg~~~~~~~~a~~~l 222 (323)
|+|+|+||.+.+ .+++++++. +||++++ ++ ++++|.||++...+ .++ +
T Consensus 45 Y~Avqvg~g~~~--------~~~~~Kp~~--------------Ghf~kag-v~-pkr~l~Efrv~~~~---~~~-----~ 92 (209)
T 3r8s_D 45 YRAIQVTTGAKK--------ANRVTKPEA--------------GHFAKAG-VE-AGRGLWEFRLAEGE---EFT-----V 92 (209)
T ss_dssp SCEEEEEESCCC--------GGGSCHHHH--------------HHHHHHT-CC-CCSEEEEEECCTTC---CCC-----T
T ss_pred eEEEEEEEeecC--------cccCCHHHh--------------hHHHHcC-CC-CCeEEEEEecCCcc---cCC-----C
Confidence 999999998654 244565555 5999987 88 79999999996532 354 9
Q ss_pred CcccCcccccCCCceEEEEEEecccccccceeeeccCCCCCCCC---CCCCCCccccC-CCCCCccCCCCCCCCCCCceE
Q 038172 223 EKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH---RGLRKVACIGA-WHPARVSFTVARAGQNGYHHR 298 (323)
Q Consensus 223 Gk~i~v~dvF~~Ge~VDVigvTKGKGFqGvvKRwG~~~~prkth---k~~RkvGsiG~-~~P~rV~~~v~~aGQmG~h~r 298 (323)
|++|++ |+|++||+|||+|+|||||||||||||||+++| +|| ++||++||||+ |+|+|||||++||||||||+|
T Consensus 93 G~~i~v-~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p-~sHG~s~~hR~~GsiG~~~~P~rV~kgkkmaG~mG~~~~ 170 (209)
T 3r8s_D 93 GQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQD-ATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERV 170 (209)
T ss_dssp TCEECG-GGGGSCCEEEEEEECCCCCEECHHHHHCCCCCC-SSTTCCSCSSSCCCCCCBTTBCSCCTTCCCSEECSSSEE
T ss_pred CCEEEe-eeEcCCCEEEEEEEEeccccceeeeEcCCCCCC-cccCCCCCCCCCeeCCCCCCCCcCcCCCccCCCCCCccE
Confidence 999999 599999999999999999999999999999999 787 47999999999 899999999999999999999
Q ss_pred EEeeeEEEEEcCCCCc
Q 038172 299 TEMNKKVYKLGKGGQE 314 (323)
Q Consensus 299 Te~NkrI~kIg~~~~~ 314 (323)
|++||+|++||.+.|.
T Consensus 171 T~~Nl~I~kid~e~nl 186 (209)
T 3r8s_D 171 TVQSLDVVRVDAERNL 186 (209)
T ss_dssp EEEEEEEEEEEGGGTE
T ss_pred EEecCEEEEEcCCCCE
Confidence 9999999999988764
No 11
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Probab=100.00 E-value=1.2e-59 Score=426.11 Aligned_cols=177 Identities=29% Similarity=0.413 Sum_probs=161.3
Q ss_pred eeeeeEEeecceEEEeccCCCCCcCCCCcEEEeeEEEEeCCeEEEEEEeeeeCCCCcccceEEeccccchhHhhhhcccc
Q 038172 63 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNW 142 (323)
Q Consensus 63 l~gf~GyKaGMThv~~~ddr~~s~~~~kev~~pVTVlE~pP~~Vvgi~gY~kt~~Gl~~~~~vwa~~l~~~~~Rr~~k~~ 142 (323)
|.|+||.|+|||+||++ | ..+||||||+.||+|+++ +|.+ +|+
T Consensus 1 m~Gllg~KiGMt~if~~-G----------~~ipvTVi~~~~~~V~q~----kt~e----------------------~dG 43 (206)
T 3v2d_E 1 MKGILGVKVGMTRIFRD-D----------RAVPVTVILAGPCPVVQR----RTPE----------------------KDG 43 (206)
T ss_dssp CCEEEEEEEEEEEEESS-S----------CEEEEEEEECCCEEEEEE----ECHH----------------------HHS
T ss_pred CceEEEEEccceeEEcC-C----------CEEEEEEEEecCCEEEEE----EccC----------------------cCC
Confidence 46999999999999999 9 899999999999999999 9999 999
Q ss_pred chhhhhhchhcccccccccchhhhHHHHHHhhccceEEEeehhhhhhhccCcccCCceEEEEEecCCcchhhhhhhhcCC
Q 038172 143 CKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF 222 (323)
Q Consensus 143 y~s~~~~~~~~~k~~~~~~~~k~~~~~l~~~~~~~~~irvi~~tq~~k~~gl~~kk~~i~Ei~V~gg~~~~~~~~a~~~l 222 (323)
|+|+|+||.+.+ .+++++++. +||++++ ++ ++++|.||++.. .+
T Consensus 44 Y~Avqvg~~~~~--------~~~~~kp~~--------------Ghf~kag-v~-pkr~l~Efrv~~------------~~ 87 (206)
T 3v2d_E 44 YTAVQLGFLPQN--------PKRVNRPLK--------------GHFAKAG-VE-PVRILREIRDFN------------PE 87 (206)
T ss_dssp SCEEEEEEEECC--------GGGCCHHHH--------------HHHHTTC-CC-CEEEEEEEETCC------------CS
T ss_pred eEEEEEEeccCC--------ccCCCHHHh--------------hhHHHcC-CC-cCeEEEEEECCC------------CC
Confidence 999999998654 244555555 5999987 88 689999999853 28
Q ss_pred CcccCcccccCCCceEEEEEEecccccccceeeeccCCCCCCCCC---CCCCCccccC-CCCCCccCCCCCCCCCCCceE
Q 038172 223 EKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR---GLRKVACIGA-WHPARVSFTVARAGQNGYHHR 298 (323)
Q Consensus 223 Gk~i~v~dvF~~Ge~VDVigvTKGKGFqGvvKRwG~~~~prkthk---~~RkvGsiG~-~~P~rV~~~v~~aGQmG~h~r 298 (323)
|++|++ |+|++||+|||+|+|||||||||||||||+++| +||. +||++||||+ |+|+||++|++||||||||+|
T Consensus 88 G~~i~v-~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p-~tHG~s~~hR~~GsiG~~~~P~rV~kgkkmaG~mG~~~~ 165 (206)
T 3v2d_E 88 GDTVTV-EIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGP-DSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERV 165 (206)
T ss_dssp SSEECG-GGCCTTCEEEEEEECCCCCEECHHHHSCCCCCC-SSTTCCSCTTCCCCCCCBTTBCSCCTTCCCCEECSSSEE
T ss_pred CCEEEe-eeecCCCEEEEEEEEeccccceeeeEcccCCCC-cccCCCCCCCCCeeCCCCCCCCcCcCCCccCCCCCCccE
Confidence 999999 599999999999999999999999999999999 7884 7999999999 899999999999999999999
Q ss_pred EEeeeEEEEEcCCCCc
Q 038172 299 TEMNKKVYKLGKGGQE 314 (323)
Q Consensus 299 Te~NkrI~kIg~~~~~ 314 (323)
|++||+||+||.+.|.
T Consensus 166 T~~Nl~I~kid~e~nl 181 (206)
T 3v2d_E 166 TVMNLEVVDVIPEENL 181 (206)
T ss_dssp EEEEEEEEEEETTTTE
T ss_pred EEeccEEEEEcCCCCE
Confidence 9999999999988774
No 12
>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}
Probab=21.82 E-value=1.3e+02 Score=25.87 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=30.7
Q ss_pred ecceEEEeccCCCCCcCCCCcEEEeeE------EEEeCCeEEEEE
Q 038172 71 AGMTHIVRDVEKPGSKLHKKETCEAVT------IIETPPMMVVGV 109 (323)
Q Consensus 71 aGMThv~~~ddr~~s~~~~kev~~pVT------VlE~pP~~Vvgi 109 (323)
.|.-.++-.|.|++||+.|+-..+-.. .|.+||..-=|+
T Consensus 82 ~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf 126 (174)
T 3ejk_A 82 VGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGF 126 (174)
T ss_dssp ESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEE
T ss_pred eeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEE
Confidence 588888889999999999995544443 778888876666
Done!