RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 038172
(323 letters)
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 260 bits (666), Expect = 3e-86
Identities = 100/298 (33%), Positives = 150/298 (50%), Gaps = 21/298 (7%)
Query: 25 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 84
+ PR GSLGF PRKR+ + ++P DD + F GYKAGMTH+V ++P
Sbjct: 2 QPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQP--GVQGFAGYKAGMTHVVLVNDEPN 59
Query: 85 SKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCK 144
S E VT+IETPPM V + Y TP G R L VW E+ R
Sbjct: 60 SPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDH 119
Query: 145 SKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEI 204
A + +E +R++ HT + + +KK +ME
Sbjct: 120 DPDAAEEQIRDAHE---------------AGDLGDLRLITHTVPDAVPSVPKKKPDVMET 164
Query: 205 QVNGGTIAEKVDYAYGFFE--KQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 262
+V GG++++++D+A E + ++ +F+ E D+ GVTKGKG +G V RWGV +
Sbjct: 165 RVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRK 224
Query: 263 RKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTG 318
K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ +G+G + + G
Sbjct: 225 GKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDG 282
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 81.2 bits (200), Expect = 8e-19
Identities = 39/248 (15%), Positives = 62/248 (25%), Gaps = 72/248 (29%)
Query: 63 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSL 122
+ +G K GMT I + G + VT+IE V V + L
Sbjct: 1 MIGLVGKKVGMTRIFTE---DGVSI-------PVTVIEVEANRVTQV----------KDL 40
Query: 123 NTVWAQHLSEEVRRRFYKNWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVVRV 182
+ + + K + F
Sbjct: 41 ANDGYRAIQVTTGAKKANRVTKPEAGHF-------------------------------- 68
Query: 183 LAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIG 242
++ G ++ F Q +F + +D+ G
Sbjct: 69 -----------------AKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTG 111
Query: 243 VTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWH---PARVSFTVARAGQNGYHHRT 299
+KGKG+ G V RW L P +V AGQ G T
Sbjct: 112 TSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVT 171
Query: 300 EMNKKVYK 307
+ V +
Sbjct: 172 VQSLDVVR 179
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus
thermophilus [TaxId: 274]}
Length = 205
Score = 67.8 bits (165), Expect = 5e-14
Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 3/126 (2%)
Query: 185 HTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVT 244
+ + + + + + E +F+ E +D+ G +
Sbjct: 49 LGFLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTS 108
Query: 245 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWH---PARVSFTVARAGQNGYHHRTEM 301
KG+G+ GV+ RW P + P RV AG G T M
Sbjct: 109 KGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVM 168
Query: 302 NKKVYK 307
N +V
Sbjct: 169 NLEVVD 174
Score = 42.8 bits (100), Expect = 2e-05
Identities = 25/163 (15%), Positives = 44/163 (26%), Gaps = 23/163 (14%)
Query: 66 FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMMVVGVVGYVKTPRGLRSLNTV 125
LG K GMT I RD + VT+I P VV K L +
Sbjct: 4 ILGVKVGMTRIFRD-----------DRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFL 52
Query: 126 WAQHLSEEVRRRFYKNWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKIKKYASVV----- 180
+ V R ++ K+ + + + + ++ ++ K + V
Sbjct: 53 PQNP--KRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKG 110
Query: 181 -----RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 218
+ K H + +V
Sbjct: 111 RGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKG 153
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 205
Score = 62.3 bits (151), Expect = 4e-12
Identities = 25/121 (20%), Positives = 37/121 (30%), Gaps = 3/121 (2%)
Query: 190 KMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGY 249
K + K + ++ + +F + E ID G +KGKG
Sbjct: 54 KAERKVNKPMQGHFAKAGVAPTRILREFRGFAPDGDSVNVDIFAEGEKIDATGTSKGKGT 113
Query: 250 EGVVTRWGVTRLPRKTHRGLRKVACIGAWH---PARVSFTVARAGQNGYHHRTEMNKKVY 306
+GV+ RW P P RV AG G T N +V
Sbjct: 114 QGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVV 173
Query: 307 K 307
+
Sbjct: 174 E 174
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 30.4 bits (68), Expect = 0.28
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 137 RFYKNWCKSKKKAFTKYSKQYETDEGKKS 165
Y++W K + SK+YET + K
Sbjct: 213 MKYRDWIIRSKFEWHTLSKEYETQKVPKE 241
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 29.3 bits (65), Expect = 0.54
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 137 RFYKNWCKSKKKAFTKYSKQYETDEGKKS 165
YK W KK+ + K +KQY+ + +
Sbjct: 241 NSYKEWISKKKEEYNKQAKQYQEYQKGNN 269
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 28.1 bits (62), Expect = 1.3
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 137 RFYKNWCKSKKKAFTKYSKQYETDEGKKSIQA 168
+ Y W KKK + S ++ + + + I
Sbjct: 222 KSYDQWITRKKKQWDVLSTKFSSVKKTQKIGT 253
>d3besl1 a.26.1.3 (L:0-126) Interferon-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 26.6 bits (59), Expect = 2.3
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 140 KNWCK-SKKKAF-----TKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKG 193
KNW + S +K + Y K ++ + +SIQ +E IK + ++ +K
Sbjct: 35 KNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIK--EDMNVKFFNSNKKKRDD 92
Query: 194 LKQKKAHLMEIQVNGGTIAEK 214
++ L V + K
Sbjct: 93 FEK----LTNYSVTDLNVQRK 109
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 169
Score = 26.5 bits (58), Expect = 3.8
Identities = 15/126 (11%), Positives = 41/126 (32%), Gaps = 16/126 (12%)
Query: 56 DPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMMVVGVV--GYV 113
D L LG G ++++ + A+ + +++VG G
Sbjct: 33 DSRLIDLLERALGIGRGDAKVIKNAGNIVDDGVIRSAAVAIYALGDNEIIIVGHTDCGMA 92
Query: 114 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSKKKAFTKYSKQYETDEGKKSIQAQLEKI 173
+ L ++ + + EEV F + + ++++ ++++
Sbjct: 93 RLDEDLI-VSRMRELGVEEEVIENFSIDVLN-------------PVGDEEENVIEGVKRL 138
Query: 174 KKYASV 179
K +
Sbjct: 139 KSSPLI 144
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 25.5 bits (55), Expect = 6.3
Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 30/143 (20%)
Query: 119 LRSLNTVWA--QHLSEEVRR----RFYKNWCKSKKKAFTKYSKQYET-DEGKKSIQAQLE 171
L L+ W Q + E R RF +W + K E +
Sbjct: 4 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT 63
Query: 172 KIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAV 231
++ + + + + + + G A+
Sbjct: 64 EVPDFNKMYELYDPCTVMFFF--------------RN----KHIMIDLGTGNNNKINWAM 105
Query: 232 FQKDEMIDII-----GVTKGKGY 249
K EM+DII G KG+G
Sbjct: 106 EDKQEMVDIIETVYRGARKGRGL 128
>gi|152032317|gb|ABS29000.1|(24-141:166) interferon-gamma
[Rhinoceros unicornis] gi|83416599|gb|ABC18310.1|
interferon gamma [Ceratotherium simum] E=1e-37 s/c=1.35
id=65% cov=100%
Length = 118
Score = 24.7 bits (54), Expect = 8.4
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 140 KNWCK-SKKKAF-----TKYSKQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKG 193
KNW + S KK + Y K +E + + IQ ++ IK + ++ K+
Sbjct: 34 KNWKEESDKKIIQSQIVSFYFKLFENLKDNQVIQKSMDTIK--EDLFVKFFNSSTSKLDD 91
Query: 194 LKQKKAHLMEIQVNGGTIAEK 214
K+ L++I V+ + K
Sbjct: 92 FKK----LIQIPVDDLQVQRK 108
>d1d5ya3 d.60.1.2 (A:122-294) Rob transcription factor, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 173
Score = 25.4 bits (55), Expect = 8.5
Identities = 5/55 (9%), Positives = 14/55 (25%), Gaps = 3/55 (5%)
Query: 96 VTIIETPPMMVVGVVGYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCKSKKKAF 150
+ ++GV L ++ + + + F N +
Sbjct: 7 HKFVTLEDTPLIGVT--QSYSCSLEQISDFRHE-MRYQFWHDFLGNAPTIPPVLY 58
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 24.8 bits (54), Expect = 8.8
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 160 DEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAY 219
+ + LE + +V + T K +++ A L+ + + +
Sbjct: 10 ADLEDDALEALEVARDTGAVKKGTNETT----KSIERGSAELVFVAEDVQPEEIVMHIPE 65
Query: 220 GFFEKQIPVDAVFQKDEMIDIIGVTKG 246
EK +P V Q+D++ G+ G
Sbjct: 66 LADEKGVPFIFVEQQDDLGHAAGLEVG 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,235,052
Number of extensions: 59574
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 18
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)