Your job contains 1 sequence.
>038175
NGYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS
NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG
TAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038175
(155 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 360 6.0e-50 2
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 358 2.0e-49 2
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 340 2.9e-48 2
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 351 4.7e-48 2
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 342 4.2e-47 2
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 283 5.7e-38 2
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 278 8.3e-37 2
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 261 1.0e-35 2
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 253 3.1e-34 2
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 238 1.7e-32 2
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 224 6.4e-28 2
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 240 8.8e-28 2
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 226 1.0e-27 2
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 216 7.2e-24 2
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 202 9.9e-23 2
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 231 2.3e-18 1
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 203 1.3e-16 2
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 128 3.8e-16 2
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 145 1.6e-14 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 126 1.9e-14 2
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 133 2.5e-14 2
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 133 2.6e-14 2
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 138 2.8e-14 2
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 133 3.1e-14 2
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 133 3.1e-14 2
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 131 1.5e-13 2
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 131 1.6e-13 2
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 127 3.9e-13 2
ZFIN|ZDB-GENE-050522-502 - symbol:trnau1ap "tRNA selenocy... 127 4.0e-13 2
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 127 4.3e-13 2
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 127 4.4e-13 2
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 127 4.4e-13 2
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 127 4.7e-13 2
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 138 8.1e-13 2
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 117 1.1e-12 2
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 128 1.2e-12 2
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 144 1.4e-12 2
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 137 4.2e-12 2
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 131 1.6e-11 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 119 2.6e-11 2
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 120 2.7e-11 2
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 113 2.9e-11 2
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 157 7.5e-11 1
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 119 1.1e-10 2
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 112 3.2e-10 2
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 123 3.5e-10 2
DICTYBASE|DDB_G0292472 - symbol:DDB_G0292472 species:4468... 138 6.1e-10 2
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 111 7.2e-10 2
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 149 7.4e-10 1
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 130 1.4e-09 2
TAIR|locus:2025077 - symbol:MAC5A "MOS4-associated comple... 146 2.1e-09 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 143 2.4e-09 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 143 2.7e-09 1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 143 2.7e-09 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 143 2.8e-09 1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 143 2.8e-09 1
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 143 2.8e-09 1
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 143 2.8e-09 1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 143 2.9e-09 1
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 143 2.9e-09 1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 143 2.9e-09 1
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 143 3.0e-09 1
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 143 3.0e-09 1
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 143 3.0e-09 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 143 3.0e-09 1
POMBASE|SPBC1289.12 - symbol:usp109 "U1 snRNP-associated ... 121 3.3e-09 2
ZFIN|ZDB-GENE-040426-2298 - symbol:rbm22 "RNA binding mot... 143 3.6e-09 1
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 142 3.9e-09 1
ZFIN|ZDB-GENE-030131-4817 - symbol:wu:fd99c08 "wu:fd99c08... 149 3.9e-09 1
UNIPROTKB|Q49AS9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 137 4.4e-09 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 140 5.0e-09 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 142 5.1e-09 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 140 5.5e-09 1
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 140 5.5e-09 1
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 140 5.5e-09 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 141 5.5e-09 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 140 5.5e-09 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 110 5.6e-09 2
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 133 5.9e-09 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 117 6.2e-09 2
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 140 6.4e-09 1
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 140 6.4e-09 1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 140 6.4e-09 1
ZFIN|ZDB-GENE-050506-42 - symbol:scaf4b "SR-related CTD-a... 144 6.7e-09 1
FB|FBgn0034572 - symbol:CG9346 species:7227 "Drosophila m... 145 7.3e-09 1
DICTYBASE|DDB_G0274995 - symbol:DDB_G0274995 "Uncharacter... 132 7.7e-09 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 106 8.4e-09 2
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote... 126 8.8e-09 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 115 9.7e-09 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 122 1.0e-08 2
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 111 1.0e-08 2
UNIPROTKB|F1NMD7 - symbol:RBM22 "Pre-mRNA-splicing factor... 138 1.2e-08 1
UNIPROTKB|Q5ZM16 - symbol:RBM22 "Pre-mRNA-splicing factor... 138 1.2e-08 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 137 1.3e-08 1
UNIPROTKB|F1PC86 - symbol:SCAF8 "Uncharacterized protein"... 144 1.3e-08 1
UNIPROTKB|F1MYK6 - symbol:LOC540182 "Uncharacterized prot... 144 1.3e-08 1
UNIPROTKB|Q9UPN6 - symbol:SCAF8 "Protein SCAF8" species:9... 144 1.3e-08 1
UNIPROTKB|F1NW30 - symbol:Gga.54017 "Uncharacterized prot... 144 1.3e-08 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 137 1.4e-08 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 137 1.4e-08 1
WARNING: Descriptions of 686 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 360 (131.8 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 67/98 (68%), Positives = 79/98 (80%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
SDG+S NATIFVG +D +V D+DLR+ FS FGE++SVKIPVGKGCGFVQFA+RK AE A+
Sbjct: 314 SDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAI 373
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAH 153
+ L GT IGK TVRLSWG +P NKQWRGD WNG +
Sbjct: 374 ESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGY 410
Score = 177 (67.4 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 37/56 (66%), Positives = 43/56 (76%)
Query: 8 DITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
D+T+ +L ETFS AKV IDSNTG +KGYGFVRFGDENERSRA+ EMNG+
Sbjct: 212 DVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGA 267
Score = 108 (43.1 bits), Expect = 0.00018, P = 0.00018
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK---- 98
++++ +A+ +G D K T++VG L + + L FSH GE+ SVK+ K
Sbjct: 92 QHQQHKAIDRGSGDDVK----TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQ 147
Query: 99 --GCGFVQFANRKDAEVALQKLQGTAI--GKQTVRLSWGH-NPGNKQ 140
G GFV+F +R AE LQ G+ + Q R++W + G K+
Sbjct: 148 SEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKR 194
Score = 49 (22.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
S KV + T ++GYGFV F + +GS
Sbjct: 135 SSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGS 172
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 358 (131.1 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 68/102 (66%), Positives = 82/102 (80%)
Query: 54 NGS--DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDA 111
NGS DG+SNN+TIFVG LD++V+++DL + FS FGE++SVKIPVGKGCGFVQFANR+ A
Sbjct: 316 NGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSA 375
Query: 112 EVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAH 153
E A+ L GT IGK TVRLSWG +P NKQWR D N WNG +
Sbjct: 376 EEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGY 416
Score = 174 (66.3 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 36/56 (64%), Positives = 44/56 (78%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
D+++++L ETF+ AKV IDSNTG +KGYGFVRFGDENERSRAM EMNG+
Sbjct: 223 DVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGA 278
Score = 113 (44.8 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 33/107 (30%), Positives = 52/107 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK---- 98
+ + ++ + G G + T++VG L + + L FSH E+ SVK+ K
Sbjct: 99 QQQHHQSQQQPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQ 158
Query: 99 --GCGFVQFANRKDAEVALQKLQGTAI--GKQTVRLSWGH-NPGNKQ 140
G GFV+F +R AE ALQ G + +Q RL+W + G K+
Sbjct: 159 SEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKR 205
Score = 53 (23.7 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S KV + T ++GYGFV F + A+ +G
Sbjct: 146 SSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSG 182
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 340 (124.7 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 62/100 (62%), Positives = 77/100 (77%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
SDG S+N TIFVG LDS V+D++LR+ F+ FGE++SVKIP GKGCGFVQF++R A+ A+
Sbjct: 288 SDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAI 347
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
QKL G IGKQ VRLSWG +P NKQ R D + WNG + G
Sbjct: 348 QKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNG 387
Score = 181 (68.8 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 37/56 (66%), Positives = 47/56 (83%)
Query: 7 SDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
SD+T+++L++TF SR AKV +D+NTGH+KGYGFVRFGDE+ERSRAM EMNG
Sbjct: 186 SDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNG 241
Score = 111 (44.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 35/105 (33%), Positives = 52/105 (49%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGKG- 99
++S I+ + D K TI++G L + + L FS GE++SVKI G+
Sbjct: 70 QQSPTQIQSSSEDNK----TIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSE 125
Query: 100 -CGFVQFANRKDAEVALQKLQGTAIG--KQTVRLSW-GHNPGNKQ 140
GFV+F AE LQ GT + +Q RL+W G + G K+
Sbjct: 126 RYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKR 170
Score = 87 (35.7 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 64 TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQ 116
+IFVG L S+V+D LR+ F S + + K+ V KG GFV+F + + A+
Sbjct: 178 SIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMT 237
Query: 117 KLQGTAIGKQTVRL 130
++ G + +R+
Sbjct: 238 EMNGVYCSSRAMRI 251
Score = 55 (24.4 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 12 SILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
S L FS+A K+ + TG ++ YGFV F + + NG+
Sbjct: 98 SYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGT 148
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 351 (128.6 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 67/100 (67%), Positives = 79/100 (79%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
S+G + N TIFVG LDS+V+D+DL++ FS FGEI+SVKIPVGKGCGFVQF NR +AE AL
Sbjct: 299 SEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEAL 358
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
+KL GT IGKQTVRLSWG NP NKQ R + N W +YG
Sbjct: 359 EKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYG 398
Score = 168 (64.2 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 33/55 (60%), Positives = 43/55 (78%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+++++L ETFS AKV +D+NTG +KGYGFVRFGDENER++AM EMNG
Sbjct: 209 DVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 263
Score = 65 (27.9 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 7 SDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
S T++ +E S KV + + G ++GYGFV F + + + E NG+
Sbjct: 121 SAFTSAEEREIVS-LKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGA 169
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 342 (125.4 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 65/99 (65%), Positives = 77/99 (77%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQ 116
+G N TIFVG LDS+V+D+DL++ F+ FGEI+SVKIPVGKGCGFVQF NR +AE AL+
Sbjct: 298 EGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALE 357
Query: 117 KLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
KL GT IGKQTVRLSWG NP NKQ R + N W +YG
Sbjct: 358 KLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYG 396
Score = 168 (64.2 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 33/55 (60%), Positives = 43/55 (78%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+++++L ETFS AKV +D+NTG +KGYGFVRFGDENER++AM EMNG
Sbjct: 207 DVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 67 (28.6 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
KV + N G ++GYGFV F + + + E NG+
Sbjct: 133 KVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGT 167
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 283 (104.7 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 57/103 (55%), Positives = 70/103 (67%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
N D NN TIFVG LD+NV+D +L+ +F FGE+L VKIP GK CGFVQ+AN+ AE
Sbjct: 251 NAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEH 310
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGA-HYG 155
AL L GT +G Q++RLSWG +P NKQ D WNG +YG
Sbjct: 311 ALSVLNGTQLGGQSIRLSWGRSP-NKQ--SDQAQ-WNGGGYYG 349
Score = 140 (54.3 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T+ +L +TF AKV +D TG +KGYGFVRF DENE+ RAM EMNG
Sbjct: 164 EVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG 218
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 278 (102.9 bits), Expect = 8.3e-37, Sum P(2) = 8.3e-37
Identities = 54/104 (51%), Positives = 73/104 (70%)
Query: 55 GSDGKSN--NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAE 112
G+ G+S+ N TIFVGA+D +V++ DL+ +F FGE++ VKIP GK CGFVQ+ANR AE
Sbjct: 268 GNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAE 327
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGA-HYG 155
AL L GT +G Q++RLSWG +P NKQ + D + G +YG
Sbjct: 328 QALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGGYYG 371
Score = 135 (52.6 bits), Expect = 8.3e-37, Sum P(2) = 8.3e-37
Identities = 30/55 (54%), Positives = 36/55 (65%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T+ +L ETF AKV D TG +KGYGFVRF DE+E+ RAM EMNG
Sbjct: 183 DVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNG 237
Score = 61 (26.5 bits), Expect = 4.8e-29, Sum P(2) = 4.8e-29
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
AKV + G+++GYGF+ F + R + NG+
Sbjct: 109 AKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGA 144
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 261 (96.9 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 52/100 (52%), Positives = 67/100 (67%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
+D NN T+FVG LD++V+D L+ +FS +GEI+ VKIP GK CGFVQF+ + AE AL
Sbjct: 254 TDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEAL 313
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
+ L G +G TVRLSWG +P NKQ GD + G YG
Sbjct: 314 RMLNGVQLGGTTVRLSWGRSPSNKQ-SGDPSQFYYGG-YG 351
Score = 144 (55.7 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 33/56 (58%), Positives = 38/56 (67%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+D+T+ IL ETF AKV ID TG TKGYGFVRF DE+E+ RAM EMNG
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNG 219
Score = 62 (26.9 bits), Expect = 4.0e-27, Sum P(2) = 4.0e-27
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
AKV + TG +GYGF+ F R + N +
Sbjct: 91 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNA 126
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 253 (94.1 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 51/102 (50%), Positives = 67/102 (65%)
Query: 56 SDGKS--NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
+ G+S NN TIFVG LD V+++ LR++FS +GE++ VKI GK CGFVQF R AE
Sbjct: 273 TQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQ 332
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
AL L GT +G Q++RLSWG +P +KQ GA+YG
Sbjct: 333 ALSSLNGTQLGGQSIRLSWGRSPSSKQTDQTQWGGSGGAYYG 374
Score = 140 (54.3 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 31/56 (55%), Positives = 38/56 (67%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+D+T+ ILQETF AKV D TG +KGYGFV+F DE+E+ RAM EMNG
Sbjct: 185 ADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNG 240
Score = 57 (25.1 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
AKV + TG ++GYGF+ F + NG+
Sbjct: 113 AKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGT 148
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 238 (88.8 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 47/94 (50%), Positives = 63/94 (67%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
TI V LD NV++++L++ FS GE++ VKIP KG G+VQF R AE A+Q++QG I
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVI 297
Query: 124 GKQTVRLSWGHNPGNKQW--RGDHINHWNGAHYG 155
G+Q VR+SW NPG W + D N WNG +YG
Sbjct: 298 GQQAVRISWSKNPGQDGWVTQADP-NQWNG-YYG 329
Score = 142 (55.0 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 31/55 (56%), Positives = 40/55 (72%)
Query: 8 DITNSILQETFS------R-AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T+ +LQETF R AKV D +TG +KGYGFV+F +E+ER+RAM EMNG
Sbjct: 126 DVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180
Score = 55 (24.4 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
KV + TG +GYGF+ F R + NG+
Sbjct: 54 KVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGT 88
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 224 (83.9 bits), Expect = 6.4e-28, Sum P(2) = 6.4e-28
Identities = 42/78 (53%), Positives = 53/78 (67%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L V++ +LR F FG+I VKIP GKGCGFVQF +R AE+A+ ++QG
Sbjct: 282 NNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGFVQFVHRHAAEMAINQMQG 341
Query: 121 TAIGKQTVRLSWGHNPGN 138
IG VRLSWG + N
Sbjct: 342 YPIGNSRVRLSWGRSQNN 359
Score = 113 (44.8 bits), Expect = 6.4e-28, Sum P(2) = 6.4e-28
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 12 SILQETF---SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE+++ RA++EM G
Sbjct: 158 SLFQARFPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQG 204
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 240 (89.5 bits), Expect = 8.8e-28, Sum P(2) = 8.8e-28
Identities = 43/74 (58%), Positives = 57/74 (77%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N+T+FVG L VS+++L+ LF +FGEI+ VKIP GKGCGFVQF NR+ AE+A+ +LQG
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGY 361
Query: 122 AIGKQTVRLSWGHN 135
+G +RLSWG N
Sbjct: 362 PLGNSRIRLSWGRN 375
Score = 112 (44.5 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---P---VGKGCGFVQFANR 108
S K++ +IFVG L NV++ D+ LF S + S KI P V +G GFV+F +
Sbjct: 179 SISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
D + AL ++QG G + +R+
Sbjct: 239 NDQKSALAEMQGQICGDRPIRV 260
Score = 98 (39.6 bits), Expect = 8.8e-28, Sum P(2) = 8.8e-28
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D T ++GYGFVRF DEN++ A+ EM G
Sbjct: 216 AKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG 250
Score = 60 (26.2 bits), Expect = 8.2e-24, Sum P(2) = 8.2e-24
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 9 ITNSILQE---TFSRA-KVTIDSN--TGHTKGYGFVRFGDENERSRAMIEMN 54
+T + +Q+ T +A KV + N TG GY FV F +E S AM MN
Sbjct: 104 VTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMN 154
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 226 (84.6 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 43/78 (55%), Positives = 52/78 (66%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++QG
Sbjct: 284 NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQG 343
Query: 121 TAIGKQTVRLSWGHNPGN 138
IG VRLSWG + N
Sbjct: 344 YPIGNSRVRLSWGRSQNN 361
Score = 107 (42.7 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 SILQETF---SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 178 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQG 224
Score = 107 (42.7 bits), Expect = 0.00023, P = 0.00023
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 154 DDRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEN 213
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
D + AL ++QG G + +R+S P NK
Sbjct: 214 DQQRALSEMQGVYCGNRPMRISTA-TPKNK 242
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 216 (81.1 bits), Expect = 7.2e-24, Sum P(2) = 7.2e-24
Identities = 43/83 (51%), Positives = 57/83 (68%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L S+VS+ L LF FG I VKIP GK CGFV+++NR++AE A+ +QG
Sbjct: 519 NNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSNREEAEEAIAAMQG 578
Query: 121 TAIGKQTVRLSWGH-NPGNKQWR 142
IG VRLSWG + NK+++
Sbjct: 579 FVIGGNRVRLSWGRVSVSNKKYQ 601
Score = 96 (38.9 bits), Expect = 7.2e-24, Sum P(2) = 7.2e-24
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+V D +G ++ +GFVRF +E+ER RA+IEMNG+
Sbjct: 286 RVMTDPISGKSRCFGFVRFTEESERQRALIEMNGA 320
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 202 (76.2 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 39/75 (52%), Positives = 50/75 (66%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGK CGFVQ+ +R AE A+ +QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQG 370
Query: 121 TAIGKQTVRLSWGHN 135
I VRLSWG +
Sbjct: 371 FPIANSRVRLSWGRS 385
Score = 112 (44.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF + + KI + KG GFV+F N + ++
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
AL ++QG + + +++ G G +Q
Sbjct: 221 ALSEMQGVFLNGRAIKV--GPTSGQQQ 245
Score = 92 (37.4 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 191 SHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227
Score = 36 (17.7 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 31 HTKGYGFVRFGDENERSRAMIEMNG 55
+ +GY FV F + A+++ NG
Sbjct: 104 NNQGYCFVDFPSSTHAANALLK-NG 127
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 231 (86.4 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 54/135 (40%), Positives = 74/135 (54%)
Query: 2 GY-CQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
GY CQ + S+ SRA + DS G V N + ++ D
Sbjct: 246 GYLCQGRPLRISVASPK-SRASIAADS------ALGIVPTSTSNRQPNQ--DLCSMDPL- 295
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
N T+FVG L SN+S+KDL+ F FG IL++KIP GKGCGFVQ++ + AE A+ +QG
Sbjct: 296 -NTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQG 354
Query: 121 TAIGKQTVRLSWGHN 135
+G +RL+WGHN
Sbjct: 355 ALVGTSHIRLAWGHN 369
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 203 (76.5 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 338 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 397
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
Score = 109 (43.4 bits), Expect = 0.00023, P = 0.00023
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
Score = 36 (17.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 25 IDSNTG--HTKGYGFVRFGDENERSRAM 50
ID +T H GY FV F + + A+
Sbjct: 118 IDPSTTQLHHAGYCFVEFETQKDAKFAL 145
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 128 (50.1 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 44 NERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFV 103
N ++ + ++ +D NN I+V LD + + L+ +F +GEI +K+ K FV
Sbjct: 196 NSQTSTIPDLTSTD--PNNTAIYVSQLDHYIDEGVLQTIFGAYGEISYIKMLTNKFSAFV 253
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
F NR+ AE A L +G +++ WG N
Sbjct: 254 NFVNRESAEAAFG-LNNFPVGNTRLKVQWGKN 284
Score = 104 (41.7 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 7 SDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+D+T+ L F A+V +DS TG ++GYGFV+F + E+ +A+I+MNG
Sbjct: 122 TDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFASDVEKDKALIDMNG 177
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 145 (56.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 38/88 (43%), Positives = 53/88 (60%)
Query: 64 TIFVGALDSNVSDKD-LRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQ 116
T+F+G L N +D+D + ELF+ GE++SV+IP KG G+VQF+N +DA+ AL
Sbjct: 268 TLFLGNLSFN-ADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326
Query: 117 KLQGTAIGKQTVRLSWGH-NPGNKQWRG 143
LQG I + VRL + P N RG
Sbjct: 327 ALQGEYIDNRPVRLDFSSPRPNNDGGRG 354
Score = 112 (44.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 31/105 (29%), Positives = 53/105 (50%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----- 96
+E+E S + N + ATIFVG L ++ D+ L++ F H G ++ ++
Sbjct: 149 EEDEESSNKKQKN--EETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTD 206
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR--LSWGHNPGN 138
+G G+V F N+ AE A+Q++QG I + + +S GN
Sbjct: 207 RSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGN 251
Score = 69 (29.3 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNN 62
A+V + T ++GYG+V F +++ +A+ EM G DG+ N
Sbjct: 197 ARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPIN 240
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 126 (49.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGFVQFANRKDAEV 113
KS A +++ LD +V D+ L+E+FS +G + S K+ P G +G GFV ++N ++A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALR 387
Query: 114 ALQKLQGTAIGKQTVRLS 131
AL ++ G IG++ + ++
Sbjct: 388 ALSEMNGKMIGRKPLYIA 405
Score = 125 (49.1 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVA 114
S IF+ LD+++ +K L E FS FG ILS K+ + KG GFVQF + A+ A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 115 LQKLQGTAIGKQTVRLSWGH 134
+ KL G + + V + GH
Sbjct: 193 IDKLNGMLMNDKQVFV--GH 210
Score = 94 (38.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 27/68 (39%), Positives = 36/68 (52%)
Query: 7 SDITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
+ I N L ETFS KV +D TG +KGYGFV+F E A+ ++NG
Sbjct: 145 ASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGM--LM 201
Query: 61 NNATIFVG 68
N+ +FVG
Sbjct: 202 NDKQVFVG 209
Score = 72 (30.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGKG-C-GFVQFANRKDAEVALQKLQ 119
++V L + + +LR+ F FG I S + G C GFV F + A A++K+
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 120 GTAIG 124
G ++G
Sbjct: 291 GISLG 295
Score = 51 (23.0 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
+V D N + GY ++ F + N+ RAM +N
Sbjct: 79 RVCRDQNR-RSLGYAYINFSNPNDAYRAMEALN 110
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 133 (51.9 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 30/99 (30%), Positives = 54/99 (54%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAE 112
+N S K N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV+F+ + A
Sbjct: 214 VNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAA 271
Query: 113 VALQKLQGTAIGKQTVRLSWG-HNPG-NKQWRGDHINHW 149
A+ + GT I V+ WG +P K ++ + W
Sbjct: 272 HAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 310
Score = 121 (47.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ + G +G + +R +W
Sbjct: 171 AIVHMGGQWLGGRQIRTNW 189
Score = 78 (32.5 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 141 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 133 (51.9 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 30/99 (30%), Positives = 54/99 (54%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAE 112
+N S K N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV+F+ + A
Sbjct: 214 VNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAA 271
Query: 113 VALQKLQGTAIGKQTVRLSWG-HNPG-NKQWRGDHINHW 149
A+ + GT I V+ WG +P K ++ + W
Sbjct: 272 HAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 310
Score = 121 (47.7 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ + G +G + +R +W
Sbjct: 171 AIVHMGGQWLGGRQIRTNW 189
Score = 78 (32.5 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 141 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 138 (53.6 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
S NN T++ G + S ++++ +R+ FS FG+I+ +++ KG FV+F++ + A A+
Sbjct: 207 SQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAI 266
Query: 116 QKLQGTAIGKQTVRLSWG 133
+ GT I V+ WG
Sbjct: 267 VSVNGTTIEGHVVKCYWG 284
Score = 120 (47.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQKL 118
+FVG L ++ +D++ F+ FG I ++ GK G GFV F N+ DAE A+Q++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 119 QGTAIGKQTVRLSW 132
G +G + +R +W
Sbjct: 168 GGQWLGGRQIRTNW 181
Score = 73 (30.8 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 133 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Score = 51 (23.0 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNG 68
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 133 (51.9 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 30/99 (30%), Positives = 54/99 (54%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAE 112
+N S K N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV+F+ + A
Sbjct: 214 VNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAA 271
Query: 113 VALQKLQGTAIGKQTVRLSWG-HNPG-NKQWRGDHINHW 149
A+ + GT I V+ WG +P K ++ + W
Sbjct: 272 HAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 310
Score = 121 (47.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ + G +G + +R +W
Sbjct: 171 AIVHMGGQWLGGRQIRTNW 189
Score = 78 (32.5 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 141 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 133 (51.9 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 30/99 (30%), Positives = 54/99 (54%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAE 112
+N S K N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV+F+ + A
Sbjct: 214 VNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAA 271
Query: 113 VALQKLQGTAIGKQTVRLSWG-HNPG-NKQWRGDHINHW 149
A+ + GT I V+ WG +P K ++ + W
Sbjct: 272 HAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 310
Score = 121 (47.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ + G +G + +R +W
Sbjct: 171 AIVHMGGQWLGGRQIRTNW 189
Score = 78 (32.5 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 141 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 131 (51.2 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
S N T++ G + S ++++ +R+ FS FG+I+ +++ KG F++F++ + A A+
Sbjct: 196 SQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAI 255
Query: 116 QKLQGTAIGKQTVRLSWG 133
+ GT I V+ WG
Sbjct: 256 VSVNGTTIEGHVVKCYWG 273
Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG I ++ GK G GFV F N+ DAE
Sbjct: 92 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 151
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+Q++ G +G + +R +W
Sbjct: 152 AIQQMGGQWLGGRQIRTNW 170
Score = 73 (30.8 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 158
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 131 (51.2 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
S N T++ G + S ++++ +R+ FS FG+I+ +++ KG F++F++ + A A+
Sbjct: 203 SQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAI 262
Query: 116 QKLQGTAIGKQTVRLSWG 133
+ GT I V+ WG
Sbjct: 263 VSVNGTTIEGHVVKCYWG 280
Score = 120 (47.3 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQKL 118
+FVG L ++ +D++ F+ FG I ++ GK G GFV F N+ DAE A+Q++
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 119 QGTAIGKQTVRLSW 132
G +G + +R +W
Sbjct: 164 GGQWLGGRQIRTNW 177
Score = 73 (30.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 129 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 165
Score = 51 (23.0 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 13 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNG 64
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 127 (49.8 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
+N T++ G + S ++++ +R+ FS FG+I+ +++ KG FV+F + + A A+ + G
Sbjct: 201 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 260
Query: 121 TAIGKQTVRLSWG 133
T I V+ WG
Sbjct: 261 TTIEGHVVKCYWG 273
Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG I ++ GK G GFV F N+ DAE
Sbjct: 92 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 151
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+Q++ G +G + +R +W
Sbjct: 152 AIQQMGGQWLGGRQIRTNW 170
Score = 73 (30.8 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 158
>ZFIN|ZDB-GENE-050522-502 [details] [associations]
symbol:trnau1ap "tRNA selenocysteine 1 associated
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-502 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00510000047100 CTD:54952
HOGENOM:HOG000234338 HOVERGEN:HBG056959 OrthoDB:EOG44BB34
EMBL:BX530067 EMBL:BC095331 IPI:IPI00607273 RefSeq:NP_001018445.1
UniGene:Dr.107924 ProteinModelPortal:Q503H1 SMR:Q503H1
STRING:Q503H1 Ensembl:ENSDART00000052292 GeneID:553636
KEGG:dre:553636 InParanoid:Q503H1 OMA:NVTEANE NextBio:20880371
Bgee:Q503H1 Uniprot:Q503H1
Length = 314
Score = 127 (49.8 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 36/102 (35%), Positives = 51/102 (50%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV-----GKGCGFVQFANR 108
G G+S+ ++FV L +V D L E F HF S KI + K CGFV F +
Sbjct: 86 GKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESE 145
Query: 109 KDAEVALQKLQG-TAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
++ + AL LQG T +GK+ +RLS + NK+ W
Sbjct: 146 REQKRALVDLQGATGLGKKALRLSLASSRVNKKKESSENQIW 187
Score = 70 (29.7 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
ET + ++ D TG GYGFV D+ R + ++NG
Sbjct: 27 ETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNG 66
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 127 (49.8 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
+N T++ G + S ++++ +R+ FS FG+I+ +++ KG FV+F + + A A+ + G
Sbjct: 212 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 271
Query: 121 TAIGKQTVRLSWG 133
T I V+ WG
Sbjct: 272 TTIEGHVVKCYWG 284
Score = 120 (47.3 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQKL 118
+FVG L ++ +D++ F+ FG I ++ GK G GFV F N+ DAE A+Q++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 119 QGTAIGKQTVRLSW 132
G +G + +R +W
Sbjct: 168 GGQWLGGRQIRTNW 181
Score = 73 (30.8 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 133 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Score = 50 (22.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMNG 68
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 127 (49.8 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
+N T++ G + S ++++ +R+ FS FG+I+ +++ KG FV+F + + A A+ + G
Sbjct: 212 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 271
Query: 121 TAIGKQTVRLSWG 133
T I V+ WG
Sbjct: 272 TTIEGHVVKCYWG 284
Score = 120 (47.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQKL 118
+FVG L ++ +D++ F+ FG I ++ GK G GFV F N+ DAE A+Q++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 119 QGTAIGKQTVRLSW 132
G +G + +R +W
Sbjct: 168 GGQWLGGRQIRTNW 181
Score = 73 (30.8 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 133 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Score = 51 (23.0 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNG 68
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 127 (49.8 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
+N T++ G + S ++++ +R+ FS FG+I+ +++ KG FV+F + + A A+ + G
Sbjct: 212 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 271
Query: 121 TAIGKQTVRLSWG 133
T I V+ WG
Sbjct: 272 TTIEGHVVKCYWG 284
Score = 120 (47.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQKL 118
+FVG L ++ +D++ F+ FG I ++ GK G GFV F N+ DAE A+Q++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 119 QGTAIGKQTVRLSW 132
G +G + +R +W
Sbjct: 168 GGQWLGGRQIRTNW 181
Score = 73 (30.8 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 133 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Score = 51 (23.0 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNG 68
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 127 (49.8 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
+N T++ G + S ++++ +R+ FS FG+I+ +++ KG FV+F + + A A+ + G
Sbjct: 212 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 271
Query: 121 TAIGKQTVRLSWG 133
T I V+ WG
Sbjct: 272 TTIEGHVVKCYWG 284
Score = 120 (47.3 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQKL 118
+FVG L ++ +D++ F+ FG I ++ GK G GFV F N+ DAE A+Q++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 119 QGTAIGKQTVRLSW 132
G +G + +R +W
Sbjct: 168 GGQWLGGRQIRTNW 181
Score = 73 (30.8 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 133 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Score = 50 (22.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMNG 68
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 138 (53.6 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ IFVG L + V+D+ L + FS FG + ++ G+ G GFV F +R DAE
Sbjct: 173 SNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEK 232
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPG 137
AL + G +G + +R +W + G
Sbjct: 233 ALSSMDGEWLGSRAIRCNWANQKG 256
Score = 126 (49.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 28/95 (29%), Positives = 51/95 (53%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-P----VGKGCGFVQFANRKDAEVAL 115
N ++VG LD+ V++ LR++F G + +VKI P G GFV++ + A+ A+
Sbjct: 83 NKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAM 142
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
Q L G + + +R++W + + D NH++
Sbjct: 143 QTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFH 177
Score = 62 (26.9 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 8 DITNSILQET--FSRAKVTIDSNT-GHTKGYGFVRFGDENERSRAMIEMNG 55
D+ I + T K+ D N G+ YGFV + D RAM +NG
Sbjct: 99 DVLRQIFETTGHVQNVKIIPDKNAKGYN--YGFVEYDDPGAADRAMQTLNG 147
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 117 (46.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 31/92 (33%), Positives = 46/92 (50%)
Query: 52 EMNGSDGKSNN---ATIFVGALDSNVSDKDLRELFSHFGE--ILSVKIPVGKGCGFVQFA 106
E++ D NN T++VG L V+ DL LF G I V++ KG GFV++
Sbjct: 259 ELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYN 318
Query: 107 NRKDAEVALQ--KLQGTAIGKQTVRLSWGHNP 136
+A +A+Q Q +Q +R SWG+ P
Sbjct: 319 THDEAALAIQMGNAQPFLFSRQ-IRCSWGNKP 349
Score = 105 (42.0 bits), Expect = 0.00057, P = 0.00057
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVK-IPVGKGC-GFVQFANRKDAEVALQKLQGT 121
+++ G + + V++ L+E+F+ G I S K I K GFV + +R+ A +A+ L G
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGR 123
Query: 122 AIGKQTVRLSWGHNPGNKQWRGDHINHWNG 151
I Q ++++W + G ++ H N + G
Sbjct: 124 HIFGQPMKVNWAYATGQREDTSSHFNIFVG 153
Score = 100 (40.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSV----------KIPVGKGCGFVQFANRK 109
S++ IFVG L V+D L + FS F S K +G GFV F N++
Sbjct: 145 SSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQ 204
Query: 110 DAEVALQKLQGTAIGKQTVRLSW 132
DA+ A+ ++ G + + +R +W
Sbjct: 205 DAQTAINEMNGKWVSSRQIRCNW 227
Score = 81 (33.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
A+V D TG ++G+GFV F ++ + A+ EMNG
Sbjct: 181 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 215
Score = 52 (23.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 7 SDITNSILQETFSRAKVTIDSNTGHTK---GYGFVRFGDENERSRAMIEMNG 55
+ +T +LQE F+ I+S K YGFV + D S A++ +NG
Sbjct: 72 TQVTEILLQEIFASTG-PIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNG 122
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ D+R F+ FG I ++ GK G GFV F N+ DAE
Sbjct: 93 SNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 152
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+Q++ G +G + +R +W
Sbjct: 153 AIQQMGGQWLGGRQIRTNW 171
Score = 123 (48.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 22/73 (30%), Positives = 45/73 (61%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
+N T++ G + + ++++ +R+ FS FG+I+ V++ KG FV+F + + A A+ + G
Sbjct: 202 SNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFNSHESAAHAIVSVNG 261
Query: 121 TAIGKQTVRLSWG 133
T++ V+ WG
Sbjct: 262 TSLEGHIVKCYWG 274
Score = 73 (30.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 123 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 159
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 144 (55.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEV 113
S + +FVG L S + LRE F FGE+ KI GKG GFV + R+DAE
Sbjct: 129 SRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAER 188
Query: 114 ALQKLQGTAIGKQTVRLSWG-HNPGNKQWRG 143
A+ ++ G +G++T+R +W P RG
Sbjct: 189 AIDEMNGAWLGRRTIRTNWATRKPDEDGERG 219
Score = 123 (48.4 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 36/124 (29%), Positives = 64/124 (51%)
Query: 34 GYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVK 93
G G R+ +++E++ I N ++N +++VG + +N+ + ++R F FG I V+
Sbjct: 230 GGGRDRYHNQSEKTYDEI-FN--QAAADNTSVYVGNI-ANLGEDEIRRAFDRFGPINEVR 285
Query: 94 IPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN--PGNKQWRGDHINHWNG 151
+G FV+F ++ A A+ ++ IG Q VR SWG + G RG +G
Sbjct: 286 TFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSWGKSGDSGKPSERGSGGGGGSG 345
Query: 152 AHYG 155
+YG
Sbjct: 346 -NYG 348
Score = 110 (43.8 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 32/105 (30%), Positives = 53/105 (50%)
Query: 41 GDE-NERSRAMI-EMNG---SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
GD N R A I E G + G + T+FV LD ++D+ L LF+ G ++ KI
Sbjct: 13 GDGFNPRVHARIAEREGFQLASGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKI- 71
Query: 96 VGKGCG----FVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136
+ +G FV+F++ A +ALQ G + ++ + ++W P
Sbjct: 72 IFEGLNDPYAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAFEP 116
Score = 52 (23.4 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 9 ITNSILQETFSRAKVTIDSNT---GHTKGYGFVRFGDENERSRAMIEMNGSD 57
IT+ L F++ + + G Y FV F D N+ + A+ NG +
Sbjct: 51 ITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSHNGRE 102
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 137 (53.3 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
+N T++ G + S +SD+ +R+ FS FG+I+ +++ KG FV+F + + A A+ + G
Sbjct: 204 SNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNG 263
Query: 121 TAIGKQTVRLSWG 133
T I TV+ WG
Sbjct: 264 TCIEGHTVKCYWG 276
Score = 134 (52.2 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L +S D+R F+ FG+I ++ GK G GF+ F N+ DAE
Sbjct: 94 SNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAES 153
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+Q++ G +G + +R +W
Sbjct: 154 AIQQMNGQWLGGRQIRTNW 172
Score = 51 (23.0 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 132 WGHNPGNKQWRGDHI-NHWNGAHYG 155
WG + GN Q G ++ N W YG
Sbjct: 306 WGQSYGNGQQMGQYVPNGWQMPTYG 330
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 131 (51.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEV 113
+S IF+ LD ++ K L + FS FG I+S K+ V KG GFVQ+AN + A+
Sbjct: 120 RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQK 179
Query: 114 ALQKLQGTAIGKQTV 128
A++KL G + + V
Sbjct: 180 AIEKLNGMLLNDKQV 194
Score = 124 (48.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 16 ETFSRAKVTIDSNTGHT---KGYGFVRFGDENERS---RAMIEMNGSDG--KSNNATIFV 67
E A ++S GH K + R ++ER R E N + K ++ ++V
Sbjct: 263 ENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYV 322
Query: 68 GALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGFVQFANRKDAEVALQKLQGTA 122
LD ++SD+ L+E+FS FG + S K+ P G KG GFV FA ++A A+ +L G
Sbjct: 323 KNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKM 382
Query: 123 I 123
I
Sbjct: 383 I 383
Score = 107 (42.7 bits), Expect = 0.00044, P = 0.00044
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---VGK---GCGFVQFANRKDAEVAL 115
N +++VG LD NV+D L + F G +++V++ V + G G+V F N +DA A+
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 116 QKLQGTAIGKQTVRLSWGH 134
Q+L + + +R+ + H
Sbjct: 95 QELNYIPLYGKPIRVMYSH 113
Score = 94 (38.1 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 52 EMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS-VKIPVG----KGCGFVQFA 106
E + + K+ ++V L + +D DL+ F +G+I S V + G KG GFV F
Sbjct: 204 ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFE 263
Query: 107 NRKDAEVALQKLQG 120
N DA A++ L G
Sbjct: 264 NADDAARAVESLNG 277
Score = 60 (26.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 8 DITNSILQETFSR--AKVTI----DSNTGHTKGYGFVRFGDENERSRAMIEMN 54
++T+S L + F + VT+ D T + GYG+V F + + +RA+ E+N
Sbjct: 46 NVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN 98
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 119 (46.9 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 31/75 (41%), Positives = 41/75 (54%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGFVQFANRKDAEV 113
KS IF+ LD ++ K L E FS FG ILS K+ P G KG GFVQ+ + A+
Sbjct: 129 KSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQG 188
Query: 114 ALQKLQGTAIGKQTV 128
A+ KL G + + V
Sbjct: 189 AIDKLNGMLLNDKQV 203
Score = 109 (43.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGFVQFANRKDAEV 113
KS + ++V LD +V+D LRE F+ FG I S K+ P G +G GFV F+ ++A
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATR 382
Query: 114 ALQKLQGTAI 123
A+ ++ G I
Sbjct: 383 AITEMNGKMI 392
Score = 86 (35.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 51 IEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP-----VGKGCGFVQF 105
++ + S K ++V L ++SD++L ++F FG S I KG GFV F
Sbjct: 212 LQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNF 271
Query: 106 ANRKDAEVALQKLQG 120
N DA A+ L G
Sbjct: 272 ENSDDAARAVDALNG 286
Score = 79 (32.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I + L ETFS KV +D + G +KGYGFV++ + A+ ++NG N+
Sbjct: 144 IDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGM--LLND 200
Query: 63 ATIFVG 68
++VG
Sbjct: 201 KQVYVG 206
Score = 71 (30.1 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
+T+S L E F++A +V D T + GYG+V + + SRA+ E+N
Sbjct: 56 VTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN 107
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 120 (47.3 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQKL 118
+FVG L ++ +D++ F+ FG I ++ GK G GFV F N+ DAE A+Q++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 119 QGTAIGKQTVRLSW 132
G +G + +R +W
Sbjct: 168 GGQWLGGRQIRTNW 181
Score = 51 (23.0 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNG 68
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 113 (44.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
I++ LD + D+ L+E FS FG I K+ V GKG G V F++ +DA A+ ++ G
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVVCFSSFEDATKAVDEMNG 363
Query: 121 TAIGKQTVRLSWG 133
+G + + ++ G
Sbjct: 364 RTVGSKPLHVTLG 376
Score = 70 (29.7 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68
KV D N G +KGY +V F +RA+ MNG + NN ++VG
Sbjct: 136 KVVCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGV--RLNNRQVYVG 178
Score = 43 (20.2 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
D+T +L + F A ++ D T GYG+V F + A+ MN
Sbjct: 28 DVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 157 (60.3 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 42/142 (29%), Positives = 71/142 (50%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV-------GKGCGFVQFANRKDAEVALQKLQ 119
V L +S KD+ +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 VSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLN 187
Query: 120 GTA-IGK-QTVRLSWGHNPGNK 139
G +G + + + + +NP K
Sbjct: 188 GQKPLGAAEPITVKFANNPSQK 209
Score = 104 (41.7 bits), Expect = 0.00064, P = 0.00064
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 50 MIEMNGS--DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCG 101
+I NG+ D K+N + V L N++ ++ + LF GEI S K+ K G G
Sbjct: 26 VISTNGATDDSKTN---LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYG 82
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
FV + + DA+ A+ L G + +T+++S+
Sbjct: 83 FVNYVDPNDADKAINTLNGLKLQTKTIKVSY 113
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 119 (46.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----VGKGCGFVQFANRKDAEVA 114
K+N IFV L+ V + L + FS FG ILS K+ + KG G+V F AE A
Sbjct: 270 KTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEKA 329
Query: 115 LQKLQGTAI-GK 125
++K+ GT I GK
Sbjct: 330 IEKVNGTLILGK 341
Score = 119 (46.9 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 35/137 (25%), Positives = 69/137 (50%)
Query: 13 ILQETFSRAKVTIDSNTGHTKGYGFVRFGDEN---ERSRAMIE-MNGSDGKSNNATIFVG 68
IL E+ + TID T + G + + +R ++ +E K+ + ++F+
Sbjct: 416 ILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFIN 475
Query: 69 ALDSNVSDKDL-RELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTA 122
+D ++ D+DL +E F+ G I+ +KI KG GF+ F+ ++A+ AL L G
Sbjct: 476 NIDESI-DRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFT 534
Query: 123 IGKQTVRLSWGHNPGNK 139
G + +++S+ + N+
Sbjct: 535 FGSKQIQVSFSNKDNNQ 551
Score = 67 (28.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 7 SDITNSILQETFSR------AKVTI--DSNTGHTKGYGFVRFGDENERSRAMIEMN 54
+D+ IL E FS+ A + + DSNT + GY +V F + ++ RA+ +N
Sbjct: 193 ADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLN 248
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 112 (44.5 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
I++ LD ++D+ L+E FS FG I K+ + GKG G V F++ ++A A+ ++ G
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKGFGVVCFSSFEEASKAVNEMNG 363
Query: 121 TAIGKQTVRLSWG 133
+G +T+ ++ G
Sbjct: 364 RVVGSKTLHVTLG 376
Score = 70 (29.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68
KV D N G +KGY +V F +RA+ MNG + NN ++VG
Sbjct: 136 KVVCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGV--RLNNRQVYVG 178
Score = 43 (20.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
D+T +L + F A ++ D T GYG+V F + A+ MN
Sbjct: 28 DVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 123 (48.4 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 43 ENERSRAMIEMNGSDGKSNNA-TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----- 96
E+ +++ +E D K+ ++V LD +V + L ELFS FG I S K+ V
Sbjct: 202 EDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGI 261
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
KG GFV+F+ ++A A+ K+ G +G + + +S
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Score = 113 (44.8 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 29/84 (34%), Positives = 43/84 (51%)
Query: 52 EMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP-----VGKGCGFVQFA 106
E + S+ S +FV LD ++ +K L ++FS FG++LS K+ V KG GFVQF
Sbjct: 20 ERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFY 79
Query: 107 NRKDAEVALQKLQGTAIGKQTVRL 130
+ A GT I Q + +
Sbjct: 80 SDLSVYTACNFHNGTLIRNQHIHV 103
Score = 95 (38.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 28/91 (30%), Positives = 44/91 (48%)
Query: 55 GSDGKSNNAT-IFVGALDSNVSDKDLRELFSHFGEILS-VKIPVGKG----CGFVQFANR 108
G KS T ++V L +D DL+ LF FGEI S V + G+G GFV F
Sbjct: 110 GQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKA 169
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+ A A++K+ G + ++ + + N+
Sbjct: 170 EAAVTAIEKMNGVVVDEKELHVGRAQRKTNR 200
Score = 50 (22.7 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 22 KVTIDSNTGHTKGYGFVRF 40
KV D++ G +KGYGFV+F
Sbjct: 61 KVARDAS-GVSKGYGFVQF 78
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 138 (53.6 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 37/123 (30%), Positives = 67/123 (54%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIFVGAL 70
+SN + GYGFV+F ++E + A+ ++NG S +S +A +++ L
Sbjct: 145 NSNNNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHANLYINRL 204
Query: 71 DSNVSDKDLRELFSHFGEILSVKI---P-VGKG-C-GFVQFANRKDAEVALQKLQGTAIG 124
+ +V++ +L+E+F FG+++ KI P G C GFV F+ R++A A+ + G I
Sbjct: 205 EPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNGANIP 264
Query: 125 KQT 127
Q+
Sbjct: 265 FQS 267
Score = 36 (17.7 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 134 HNPGNKQWRGDHINHWN 150
+N NK G+H N+ N
Sbjct: 344 NNNNNKNSNGNHNNNGN 360
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 111 (44.1 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
I++ LD + D+ L+E FS FG I K+ V GKG G + F++ ++A A+ ++ G
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNG 363
Query: 121 TAIGKQTVRLSWGHNPGNKQW 141
+G + ++++ G ++W
Sbjct: 364 RIVGSKPLQVTLGQ--ARRRW 382
Score = 70 (29.7 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68
KV D N G +KGY +V F +RA+ MNG + NN ++VG
Sbjct: 136 KVVCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGV--RLNNRQVYVG 178
Score = 43 (20.2 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
D+T +L + F A ++ D T GYG+V F + A+ MN
Sbjct: 28 DVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 149 (57.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 31/90 (34%), Positives = 53/90 (58%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
+FVG L S V ++ LRE F FG++ K+ KG GFV + R++AE A++++
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 119 QGTAIGKQTVRLSWG-HNPGNKQWRGDHIN 147
G +G++T+R +W PG+++ + H N
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQE-KPSHYN 225
Score = 124 (48.7 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 44 NERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFV 103
NE+S I N + G +N +++VG + S D ++R+ F+ FG I V+I +G FV
Sbjct: 225 NEKSYDEI-YNQTSG--DNTSVYVGNIASLTED-EIRQGFASFGRITEVRIFKMQGYAFV 280
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+F N+ A A+ ++ +G Q VR SWG
Sbjct: 281 KFDNKDAAAKAIVQMNNQDVGGQLVRCSWG 310
Score = 116 (45.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/131 (25%), Positives = 60/131 (45%)
Query: 27 SNTGHTKGYGF-VRFGDENERSRAMIEMNG---SDGKSNNATIFVGALDSNVSDKDLREL 82
+N+ H GY V G + E G +G T++VG LDS V++ + L
Sbjct: 8 ANSNH--GYNDDVNTGYNARMHSKLAEREGFHLGNGSDEPRTLYVGNLDSTVTEDFIATL 65
Query: 83 FSHFGEILSVKIPV-GKG--CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
F+ G + K+ G FV+F++ A ALQ + + + ++++W PG +
Sbjct: 66 FNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQ 125
Query: 140 QWRGDHINHWN 150
Q + D H++
Sbjct: 126 QSKIDTTRHFH 136
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 130 (50.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 52 EMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PV---GKGCGFVQF 105
++ G++ K IFVG L + + + L++ F+ FGEI ++ P KG GFV F
Sbjct: 85 QLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSF 144
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLSW 132
+ +AE A+ + G +G +++R +W
Sbjct: 145 VKKSEAETAITAMNGQWLGSRSIRTNW 171
Score = 111 (44.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 62 NATIFVG----ALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQK 117
N T++ G AL ++++ L++ FS +G I +++ KG FV+F+ ++ A A+
Sbjct: 201 NCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVA 260
Query: 118 LQGTAIGKQTVRLSWGHNPGN 138
+ T I +Q V+ +WG G+
Sbjct: 261 VNNTEINQQPVKCAWGKESGD 281
Score = 71 (30.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S +V D T +KGYGFV F ++E A+ MNG
Sbjct: 123 SDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNG 159
>TAIR|locus:2025077 [details] [associations]
symbol:MAC5A "MOS4-associated complex subunit 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IGI] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0042742 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
ProtClustDB:CLSN2913258 EMBL:AC022464 EMBL:AY054519 EMBL:AY114632
IPI:IPI00518267 PIR:F86208 RefSeq:NP_563788.1 UniGene:At.25418
HSSP:P18615 ProteinModelPortal:Q9LNV5 SMR:Q9LNV5 IntAct:Q9LNV5
STRING:Q9LNV5 PaxDb:Q9LNV5 PRIDE:Q9LNV5 EnsemblPlants:AT1G07360.1
GeneID:837248 KEGG:ath:AT1G07360 TAIR:At1g07360 InParanoid:Q9LNV5
OMA:ILADKAC PhylomeDB:Q9LNV5 Genevestigator:Q9LNV5 Uniprot:Q9LNV5
Length = 481
Score = 146 (56.5 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 36/94 (38%), Positives = 53/94 (56%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT-A 122
T++VG L+S + ++D+R+ F GEI S++I K C FV + +R+ AE A Q+L
Sbjct: 229 TLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 123 IGKQTVRLSWGHNPGNKQWRGDHINHWNG-AHYG 155
I Q ++L+WG P Q D N G AH G
Sbjct: 289 INGQRLKLTWGR-PKPDQ---DGANQQGGVAHSG 318
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 143 (55.4 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 74 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 133
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 134 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 194 QKPSGATEPITVKFANNPSQK 214
Score = 108 (43.1 bits), Expect = 0.00013, P = 0.00013
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ ++ R LF GEI S K+ K G GFV + + KD
Sbjct: 41 DSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 97
Query: 111 AEVALQKLQGTAIGKQTVRLSW 132
AE A+ L G + +T+++S+
Sbjct: 98 AEKAINTLNGLRLQTKTIKVSY 119
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 143 (55.4 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 135
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 136 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 196 QKPSGATEPITVKFANNPSQK 216
Score = 108 (43.1 bits), Expect = 0.00014, P = 0.00014
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ ++ R LF GEI S K+ K G GFV + + KD
Sbjct: 43 DSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 99
Query: 111 AEVALQKLQGTAIGKQTVRLSW 132
AE A+ L G + +T+++S+
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSY 121
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 143 (55.4 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 135
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 136 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 196 QKPSGATEPITVKFANNPSQK 216
Score = 108 (43.1 bits), Expect = 0.00014, P = 0.00014
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ ++ R LF GEI S K+ K G GFV + + KD
Sbjct: 43 DSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 99
Query: 111 AEVALQKLQGTAIGKQTVRLSW 132
AE A+ L G + +T+++S+
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSY 121
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 140
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 141 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 201 QKPSGATEPITVKFANNPSQK 221
Score = 109 (43.4 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 44 NERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----- 98
N R+ G+ + + V L N++ ++ R LF GEI S K+ K
Sbjct: 32 NNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 91
Query: 99 -GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
G GFV + + KDAE A+ L G + +T+++S+
Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 126
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 140
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 141 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 201 QKPSGATEPITVKFANNPSQK 221
Score = 108 (43.1 bits), Expect = 0.00014, P = 0.00014
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ ++ R LF GEI S K+ K G GFV + + KD
Sbjct: 48 DSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 111 AEVALQKLQGTAIGKQTVRLSW 132
AE A+ L G + +T+++S+
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSY 126
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 189 QKPSGATEPITVKFANNPSQK 209
Score = 108 (43.1 bits), Expect = 0.00014, P = 0.00014
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ ++ R LF GEI S K+ K G GFV + + KD
Sbjct: 36 DSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 111 AEVALQKLQGTAIGKQTVRLSW 132
AE A+ L G + +T+++S+
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSY 114
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 189 QKPSGATEPITVKFANNPSQK 209
Score = 108 (43.1 bits), Expect = 0.00014, P = 0.00014
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ ++ R LF GEI S K+ K G GFV + + KD
Sbjct: 36 DSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 111 AEVALQKLQGTAIGKQTVRLSW 132
AE A+ L G + +T+++S+
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSY 114
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 143 (55.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 135
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 136 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 196 QKPSGATEPITVKFANNPSQK 216
Score = 109 (43.4 bits), Expect = 0.00010, P = 0.00010
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 44 NERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----- 98
N R+ G+ + + V L N++ ++ R LF GEI S K+ K
Sbjct: 27 NNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 86
Query: 99 -GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
G GFV + + KDAE A+ L G + +T+++S+
Sbjct: 87 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 143 (55.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 135
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 136 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 196 QKPSGATEPITVKFANNPSQK 216
Score = 108 (43.1 bits), Expect = 0.00015, P = 0.00015
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ ++ R LF GEI S K+ K G GFV + + KD
Sbjct: 43 DSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 99
Query: 111 AEVALQKLQGTAIGKQTVRLSW 132
AE A+ L G + +T+++S+
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSY 121
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 143 (55.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 92 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 151
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 152 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 212 QKPSGATEPITVKFANNPSQK 232
Score = 108 (43.1 bits), Expect = 0.00015, P = 0.00015
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ ++ R LF GEI S K+ K G GFV + + KD
Sbjct: 59 DSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 115
Query: 111 AEVALQKLQGTAIGKQTVRLSW 132
AE A+ L G + +T+++S+
Sbjct: 116 AEKAINTLNGLRLQTKTIKVSY 137
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 143 (55.4 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 80 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 139
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 140 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 200 QKPSGATEPITVKFANNPSQK 220
Score = 108 (43.1 bits), Expect = 0.00015, P = 0.00015
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ ++ R LF GEI S K+ K G GFV + + KD
Sbjct: 47 DSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 103
Query: 111 AEVALQKLQGTAIGKQTVRLSW 132
AE A+ L G + +T+++S+
Sbjct: 104 AEKAINTLNGLRLQTKTIKVSY 125
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 143 (55.4 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 140
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 141 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 201 QKPSGATEPITVKFANNPSQK 221
Score = 109 (43.4 bits), Expect = 0.00010, P = 0.00010
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 44 NERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----- 98
N R+ G+ + + V L N++ ++ R LF GEI S K+ K
Sbjct: 32 NNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 91
Query: 99 -GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
G GFV + + KDAE A+ L G + +T+++S+
Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 126
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 143 (55.4 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 140
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 141 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 201 QKPSGATEPITVKFANNPSQK 221
Score = 108 (43.1 bits), Expect = 0.00015, P = 0.00015
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ ++ R LF GEI S K+ K G GFV + + KD
Sbjct: 48 DSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 111 AEVALQKLQGTAIGKQTVRLSW 132
AE A+ L G + +T+++S+
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSY 126
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 143 (55.4 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 39/141 (27%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 97 KLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 156
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 157 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 121 TA--IGKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 217 QKPPAATEPITVKFANNPSQK 237
Score = 109 (43.4 bits), Expect = 0.00010, P = 0.00010
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
N D K+N + V L +++ ++L+ LF GEI S K+ K G GFV + +
Sbjct: 61 NTEDSKTN---LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVD 117
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSW 132
KDAE A+ L G + +T+++S+
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSY 142
>POMBASE|SPBC1289.12 [details] [associations]
symbol:usp109 "U1 snRNP-associated protein Usp109"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC1289.12 GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 PIR:T39363 RefSeq:NP_596836.2
GeneID:2540117 OrthoDB:EOG4HX8B5 NextBio:20801253 Uniprot:O94621
Length = 365
Score = 121 (47.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 27/89 (30%), Positives = 42/89 (47%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN ++V L N++ ++LR F HFGEIL + V G + FA R AE A+ ++
Sbjct: 187 NNTAVYVHQLPENITTQELRSYFLHFGEILYTQ--VNNNSGRIVFAQRYFAEQAINEMNN 244
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
+ ++LSW P +W
Sbjct: 245 FPLHGVRIQLSWARPPSMALLPSKQSTYW 273
Score = 41 (19.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 7 SDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+DI + F A+V + G + F+ +E++ A +EM G+
Sbjct: 100 NDIKYLFQRYNFISARV-LRCVDGTSTSIAFIWLANESDIQNAQVEMQGA 148
>ZFIN|ZDB-GENE-040426-2298 [details] [associations]
symbol:rbm22 "RNA binding motif protein 22"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017069
"snRNA binding" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 ZFIN:ZDB-GENE-040426-2298 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0009790 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 HSSP:Q9H0Z9 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AY648794 EMBL:BC065892
IPI:IPI00487656 RefSeq:NP_998379.1 RefSeq:XP_003200934.1
UniGene:Dr.32898 ProteinModelPortal:Q6NZZ9 SMR:Q6NZZ9 STRING:Q6NZZ9
PRIDE:Q6NZZ9 Ensembl:ENSDART00000003983 Ensembl:ENSDART00000122126
GeneID:100536641 GeneID:406495 KEGG:dre:100536641 KEGG:dre:406495
GeneTree:ENSGT00390000002792 InParanoid:Q6NZZ9 NextBio:20818079
Bgee:Q6NZZ9 Uniprot:Q6NZZ9
Length = 425
Score = 143 (55.4 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/91 (35%), Positives = 50/91 (54%)
Query: 46 RSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQF 105
R+ M ++ D KS T+++G L NV+D +LR F FGEI ++ I + C F+QF
Sbjct: 216 RASTMPRLDVPDDKSIT-TLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQF 274
Query: 106 ANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
A R+ AE A +K I + + + WG +
Sbjct: 275 ATRQAAETAAEKSFNKLIINGRRLNVKWGRS 305
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + + + +A+ +NG S +A ++
Sbjct: 98 KLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 157
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS FG I++ +I V +G GF++F R +AE A++ L G
Sbjct: 158 VSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 218 QKPPGATEPITVKFANNPSQK 238
Score = 119 (46.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 51 IEM-NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFV 103
+EM NGS+ N + V L N++ ++L+ LF GEI S K+ K G GFV
Sbjct: 57 VEMPNGSEDSKTN--LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 114
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+ KDAE A+ L G + +T+++S+
Sbjct: 115 NYMEPKDAEKAINTLNGLRLQTKTIKVSY 143
>ZFIN|ZDB-GENE-030131-4817 [details] [associations]
symbol:wu:fd99c08 "wu:fd99c08" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046660 "female sex differentiation"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4817 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0046660 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:CABZ01087003 EMBL:CABZ01087004
EMBL:CABZ01087005 EMBL:CABZ01088109 EMBL:CU499333 IPI:IPI00900531
Ensembl:ENSDART00000112675 Bgee:E7FF46 Uniprot:E7FF46
Length = 1286
Score = 149 (57.5 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ-G 120
+ T++VG +D + +DL LF FG+I S+ + +GC ++ +R+DA ALQKL G
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTG 535
Query: 121 T-AIGKQTVRLSWGHNPGNKQ 140
+ IG + ++++W N G KQ
Sbjct: 536 SYKIGSKVIKIAWALNKGVKQ 556
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 137 (53.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 30/109 (27%), Positives = 55/109 (50%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGF 102
EN + E + N T++ G + S ++D+ +R+ FS FG+I+ +++ KG F
Sbjct: 62 ENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSF 121
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWG-HNPG-NKQWRGDHINHW 149
V+F+ + A A+ + GT I V+ WG +P K ++ + W
Sbjct: 122 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 170
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 140 (54.3 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 189 QKPPGATEPITVKFANNPSQK 209
Score = 113 (44.8 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
N D K+N + V L N++ ++L+ LF GEI S K+ K G GFV + +
Sbjct: 33 NTEDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSW 132
KDAE A+ L G + +T+++S+
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSY 114
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 142 (55.0 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 39 RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK 98
R E R + E + K++N +++VG + +D DLR+LFS +G+I V+I +
Sbjct: 303 RKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQ 362
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV++ ++ A A+ ++ G + VR SWG
Sbjct: 363 RYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWG 397
Score = 135 (52.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEV 113
S + +FVG L +VS++ L+ F+ FGE+ K+ KG GFV F N+++AE
Sbjct: 222 SKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAEN 281
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
A+ + G IGK+ VR +W +++ R
Sbjct: 282 AIAGMNGKWIGKRAVRTNWAARKNSEENR 310
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 140 (54.3 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 189 QKPPGATEPITVKFANNPSQK 209
Score = 113 (44.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
N D K+N + V L N++ ++L+ LF GEI S K+ K G GFV + +
Sbjct: 33 NTEDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSW 132
KDAE A+ L G + +T+++S+
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSY 114
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 140 (54.3 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 189 QKPPGATEPITVKFANNPSQK 209
Score = 106 (42.4 bits), Expect = 0.00031, P = 0.00031
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
N D K+N + L N++ ++L+ LF GEI S K+ K G GFV + +
Sbjct: 33 NTEDSKTN---LIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSW 132
KDAE A+ L G + +T+++S+
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSY 114
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 140 (54.3 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 189 QKPPGATEPITVKFANNPSQK 209
Score = 106 (42.4 bits), Expect = 0.00031, P = 0.00031
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
N D K+N + L N++ ++L+ LF GEI S K+ K G GFV + +
Sbjct: 33 NTEDSKTN---LIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSW 132
KDAE A+ L G + +T+++S+
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSY 114
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 141 (54.7 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 39/141 (27%), Positives = 69/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 118 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 177
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 178 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Query: 121 T--AIGKQTVRLSWGHNPGNK 139
+ + + + + +NP K
Sbjct: 238 QKPSGAAEPITVKFANNPSQK 258
Score = 114 (45.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 29/95 (30%), Positives = 45/95 (47%)
Query: 44 NERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----- 98
N RS G + + V L N++ ++ R LF GEI S K+ K
Sbjct: 69 NSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 128
Query: 99 -GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
G GFV + + KDAE A+ L G + +T+++S+
Sbjct: 129 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 163
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 140 (54.3 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 189 QKPPGATEPITVKFANNPSQK 209
Score = 113 (44.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
N D K+N + V L N++ ++L+ LF GEI S K+ K G GFV + +
Sbjct: 33 NTEDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSW 132
KDAE A+ L G + +T+++S+
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSY 114
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 110 (43.8 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 25/90 (27%), Positives = 50/90 (55%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVK-IPVGKGC-GFVQFANRKDAEVALQKLQGT 121
+++VG + + V++ L+E+F+ G + S K I K GFV + +R+ A +A+ L G
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGR 119
Query: 122 AIGKQTVRLSWGHNPGNKQWRGDHINHWNG 151
+ Q ++++W + G ++ H N + G
Sbjct: 120 HLFGQPIKVNWAYATGQREDTSSHFNIFVG 149
Score = 109 (43.4 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
S++ IFVG L V+D L + FS F ++ G+ G GFV F N++DA+
Sbjct: 141 SSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQT 200
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ ++ G + + +R +W
Sbjct: 201 AINEMNGKWLSSRQIRCNW 219
Score = 100 (40.3 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 44 NERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGE--ILSVKIPVGKGCG 101
+E + + + S T++VG L V+ DL F G I V++ KG G
Sbjct: 246 SEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFG 305
Query: 102 FVQFANRKDAEVALQ--KLQGTAIGKQTVRLSWGHNP 136
FV++ +A +A+Q Q +Q ++ SWG+ P
Sbjct: 306 FVRYNTHPEAALAIQMGNTQPYLFNRQ-IKCSWGNKP 341
Score = 87 (35.7 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T++ L ++FS A+V D TG ++G+GFV F ++ + A+ EMNG
Sbjct: 154 EVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 207
Score = 59 (25.8 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 7 SDITNSILQETF-SRAKVTIDSNTGHTKG-YGFVRFGDENERSRAMIEMNG 55
+ +T +LQE F S V K YGFV + D + A++ +NG
Sbjct: 68 TQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNG 118
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 36/120 (30%), Positives = 60/120 (50%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 113 (44.8 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
N D K+N + V L N++ ++L+ LF GEI S K+ K G GFV + +
Sbjct: 33 NTEDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSW 132
KDAE A+ L G + +T+++S+
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSY 114
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 117 (46.2 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNGS--DGKSNNAT-------IFVGA 69
+ +DSNTG ++G+GF+ F + + R + + ++G D K A IFVG
Sbjct: 76 IKMDSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRAMAIKKEPVKKIFVGG 135
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKL 118
L+ +++ +RE F FGEI ++++P K GFV F K+ E A++K+
Sbjct: 136 LNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFV-FITFKE-EFAVKKI 186
Score = 96 (38.9 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 51 IEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
++++ S + + +FVG L + S KDL++ FS FGE++ I + +G GF+
Sbjct: 33 LQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFIL 92
Query: 105 FANRKDAEVALQKLQGTAIGKQ 126
F + LQ+ + G+Q
Sbjct: 93 FKESDSVDRVLQQKEHRLDGRQ 114
Score = 40 (19.1 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 136 PGNKQWRGDHINHWNGAHYG 155
PG + W + N+WN + G
Sbjct: 232 PG-QSWNQGYNNYWNQGYGG 250
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 140 (54.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 97 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 156
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 157 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 217 QKPPGATEPITVKFANNPSQK 237
Score = 113 (44.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
N D K+N + V L N++ ++L+ LF GEI S K+ K G GFV + +
Sbjct: 61 NTEDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSW 132
KDAE A+ L G + +T+++S+
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSY 142
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 140 (54.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 98 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 157
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 158 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 218 QKPPGATEPITVKFANNPSQK 238
Score = 113 (44.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
N D K+N + V L N++ ++L+ LF GEI S K+ K G GFV + +
Sbjct: 62 NTEDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 118
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSW 132
KDAE A+ L G + +T+++S+
Sbjct: 119 PKDAEKAINTLNGLRLQTKTIKVSY 143
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 140 (54.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 40/141 (28%), Positives = 68/141 (48%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 98 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 157
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 158 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 218 QKPPGATEPITVKFANNPSQK 238
Score = 113 (44.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
N D K+N + V L N++ ++L+ LF GEI S K+ K G GFV + +
Sbjct: 62 NTEDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 118
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSW 132
KDAE A+ L G + +T+++S+
Sbjct: 119 PKDAEKAINTLNGLRLQTKTIKVSY 143
>ZFIN|ZDB-GENE-050506-42 [details] [associations]
symbol:scaf4b "SR-related CTD-associated factor 4b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050506-42 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 HOVERGEN:HBG055644 EMBL:BC065329 IPI:IPI00619155
UniGene:Dr.81696 ProteinModelPortal:Q6P118 Uniprot:Q6P118
Length = 745
Score = 144 (55.7 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 26/78 (33%), Positives = 47/78 (60%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T+++G LD +D+ L FG+I S+ + +GC +V +R+DA+ AL KL T++
Sbjct: 499 TLWIGQLDKKTQRQDITSLMEEFGQIESINMIPPRGCAYVAMVHRQDAQTALNKLSKTSV 558
Query: 124 --GKQTVRLSWGHNPGNK 139
++T++++W N G K
Sbjct: 559 KVNQKTIKIAWAMNKGIK 576
>FB|FBgn0034572 [details] [associations]
symbol:CG9346 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AY069521
UniGene:Dm.2090 ProteinModelPortal:Q7K0X5 PaxDb:Q7K0X5 PRIDE:Q7K0X5
FlyBase:FBgn0034572 InParanoid:Q7K0X5 OrthoDB:EOG469P8S
ArrayExpress:Q7K0X5 Bgee:Q7K0X5 Uniprot:Q7K0X5
Length = 958
Score = 145 (56.1 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 44 NERSRAMIEMNGSD-GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI--PV---- 96
++ S + E D G N +++G L+ +S++ L E+F +G + S+KI P
Sbjct: 196 SQNSSSSKESGSFDTGDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEE 255
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G+ CGFV + +RKDAE AL+ L G I +RL WG
Sbjct: 256 KQRGRNCGFVAYMSRKDAERALKTLNGRYIMGYEMRLGWG 295
>DICTYBASE|DDB_G0274995 [details] [associations]
symbol:DDB_G0274995 "Uncharacterized RNA-binding
protein YPL184C" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0274995 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000012 eggNOG:NOG314315 RefSeq:XP_644288.1
ProteinModelPortal:Q86AS4 EnsemblProtists:DDB0217588 GeneID:8619716
KEGG:ddi:DDB_G0274995 InParanoid:Q86AS4 OMA:WIENTRT Uniprot:Q86AS4
Length = 1104
Score = 132 (51.5 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
S + I++G + N+ +K++R+ +GEI S++I K C FV F N +A ALQ L
Sbjct: 1008 SISRAIYIGNVSDNLPEKEIRKECEKYGEIESIRILRKKACAFVNFMNIPNATAALQTLN 1067
Query: 120 GTAIGKQTVRLSWG 133
G +G VR+++G
Sbjct: 1068 GKKLGDTIVRVNYG 1081
Score = 39 (18.8 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 31 HTKGYGFVRFGDENERSRA 49
H K FV F D NE A
Sbjct: 947 HNKYCAFVNFKDTNEAINA 965
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 106 (42.4 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 119
+++ ++ DK LRE+FS FG LSVK+ + +G GFV + N ++A+ A+ ++
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 120 GTAIGKQTV 128
G + + +
Sbjct: 253 GKEVNGRMI 261
Score = 106 (42.4 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ +G GFV F ++ A A
Sbjct: 95 KSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRA 154
Query: 115 LQKLQGTAIGKQTVRLSWGH 134
+Q + G + + V + GH
Sbjct: 155 IQTMNGMLLNDRKVFV--GH 172
Score = 88 (36.0 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
++V LD + D LR+ FS +G I S K+ KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAI 123
+
Sbjct: 356 RIV 358
Score = 79 (32.9 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D + G ++GYGFV F + +RA+ MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEH-G-SRGYGFVHFETQEAANRAIQTMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGHFKS 175
Score = 61 (26.5 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
D+T ++L E FS A +V D T + GY ++ F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMN 73
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 126 (49.4 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGFVQFANRKDAEVALQKLQ 119
I+VG L SD++L +LF+ G ++ +I P G KG G VQF N DA +++KL
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 371
Query: 120 GTAIGKQTVRLSWGH 134
G G + ++LS+ H
Sbjct: 372 GYRYGGRPLQLSYAH 386
Score = 35 (17.4 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 20 RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57
RA + ++ G ++G G V E A+ ++ +D
Sbjct: 207 RADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNTD 243
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 115 (45.5 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI- 94
FV RF ER + G+ K +++ ++ D+ L+ELFS +G+ LSVK+
Sbjct: 169 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGDDMDDERLKELFSKYGKTLSVKVM 223
Query: 95 --PVGK--GCGFVQFANRKDAEVALQKLQGTAI-GK 125
P GK G GFV F +DA A++++ G I GK
Sbjct: 224 TDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGK 259
Score = 105 (42.0 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F + A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRA 154
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 155 IEKMNGMLLNDRKV 168
Score = 103 (41.3 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 356 RIVGSKPLYVALAQR---KEERKAHLTN 380
Score = 84 (34.6 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 27/70 (38%), Positives = 35/70 (50%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F ++ RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGRFKS 175
Score = 62 (26.9 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/98 (33%), Positives = 52/98 (53%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI- 94
FV RF ER M G+ K +++ ++ D+ L+ELF +G+ LSVK+
Sbjct: 170 FVGRFKSRKEREAEM----GAKAKEFT-NVYIKNFGDDMDDQRLKELFDKYGKTLSVKVM 224
Query: 95 --PVGK--GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P GK G GFV + +DA A++++ GT + +TV
Sbjct: 225 TDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTV 262
Score = 105 (42.0 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F + A+ A
Sbjct: 96 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRA 155
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 156 IEKMNGMLLNDRKV 169
Score = 103 (41.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNG 356
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 357 RIVGSKPLYVALAQR---KEERKAHLTN 381
Score = 84 (34.6 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 27/70 (38%), Positives = 35/70 (50%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F ++ RA+ +MNG N+
Sbjct: 111 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGM--LLND 166
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 167 RKVFVGRFKS 176
Score = 63 (27.2 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
DIT ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 22 DITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 74
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 111 (44.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEV 113
+S IF+ LD + +K + + FS FG ILS K+ + KG GFV F + A+
Sbjct: 116 RSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQN 175
Query: 114 ALQKLQGTAI-GKQ 126
A+QK+ G + GK+
Sbjct: 176 AIQKVNGMLLAGKK 189
Score = 65 (27.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
D+ SIL E FS A +V D+ T + GY +V F + RAM MN
Sbjct: 42 DVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN 94
>UNIPROTKB|F1NMD7 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent
protein binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 IPI:IPI00593663 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AADN02028638 PRIDE:F1NMD7
Ensembl:ENSGALT00000007249 Uniprot:F1NMD7
Length = 420
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ D K+ T++VG L +++ DLR F FGEI ++ + + C F+Q
Sbjct: 215 KRASTMPRLDPPDDKTIT-TLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQ 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AEVA +K + + + + WG +
Sbjct: 274 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGRS 305
>UNIPROTKB|Q5ZM16 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006913 "nucleocytoplasmic
transport" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0090316 "positive regulation of intracellular
protein transport" evidence=ISS] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AJ719568 IPI:IPI00593663
RefSeq:NP_001006151.1 UniGene:Gga.4751 HSSP:Q6PHZ5
ProteinModelPortal:Q5ZM16 SMR:Q5ZM16 STRING:Q5ZM16 GeneID:416270
KEGG:gga:416270 InParanoid:Q5ZM16 NextBio:20819755 Uniprot:Q5ZM16
Length = 420
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ D K+ T++VG L +++ DLR F FGEI ++ + + C F+Q
Sbjct: 215 KRASTMPRLDPPDDKTIT-TLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQ 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AEVA +K + + + + WG +
Sbjct: 274 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGRS 305
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 30/109 (27%), Positives = 55/109 (50%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGF 102
EN + E + N T++ G + S ++D+ +R+ FS FG+I+ +++ KG F
Sbjct: 185 ENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSF 244
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWG-HNPG-NKQWRGDHINHW 149
V+F+ + A A+ + GT I V+ WG +P K ++ + W
Sbjct: 245 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 293
Score = 121 (47.7 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 94 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 153
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ + G +G + +R +W
Sbjct: 154 AIVHMGGQWLGGRQIRTNW 172
>UNIPROTKB|F1PC86 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
CTD:22828 KO:K13191 GeneTree:ENSGT00530000063946 OMA:YRFPPIE
EMBL:AAEX03000284 RefSeq:XP_533458.3 Ensembl:ENSCAFT00000000878
GeneID:476252 KEGG:cfa:476252 Uniprot:F1PC86
Length = 1267
Score = 144 (55.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG +D + +DL LF FG+I S+ + +GC +V +R+DA ALQKL
Sbjct: 472 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 531
Query: 122 A--IGKQTVRLSWGHNPGNK 139
+ IG + ++++W N G K
Sbjct: 532 SYKIGSKVIKIAWALNKGVK 551
>UNIPROTKB|F1MYK6 [details] [associations]
symbol:LOC540182 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:DAAA02027254
EMBL:DAAA02027255 EMBL:DAAA02027256 IPI:IPI00699704
Ensembl:ENSBTAT00000045257 ArrayExpress:F1MYK6 Uniprot:F1MYK6
Length = 1268
Score = 144 (55.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG +D + +DL LF FG+I S+ + +GC +V +R+DA ALQKL
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 535
Query: 122 A--IGKQTVRLSWGHNPGNK 139
+ IG + ++++W N G K
Sbjct: 536 SYKIGSKVIKIAWALNKGVK 555
>UNIPROTKB|Q9UPN6 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IPI] [GO:0016363 "nuclear
matrix" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006366 GO:GO:0016363
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG306894 EMBL:AB029039 EMBL:AL121952
EMBL:AL136976 EMBL:AL591499 EMBL:BC070071 IPI:IPI01012434
RefSeq:NP_055707.3 UniGene:Hs.591329 PDB:2DIW PDB:3D9I PDB:3D9J
PDB:3D9K PDB:3D9L PDB:3D9M PDB:3D9N PDB:3D9O PDB:3D9P PDBsum:2DIW
PDBsum:3D9I PDBsum:3D9J PDBsum:3D9K PDBsum:3D9L PDBsum:3D9M
PDBsum:3D9N PDBsum:3D9O PDBsum:3D9P ProteinModelPortal:Q9UPN6
SMR:Q9UPN6 STRING:Q9UPN6 PhosphoSite:Q9UPN6 DMDM:30580495
PaxDb:Q9UPN6 PRIDE:Q9UPN6 Ensembl:ENST00000367178
Ensembl:ENST00000417268 GeneID:22828 KEGG:hsa:22828 UCSC:uc003qpz.3
CTD:22828 GeneCards:GC06P155055 HGNC:HGNC:20959 HPA:HPA035602
neXtProt:NX_Q9UPN6 PharmGKB:PA128394587 HOVERGEN:HBG055796
InParanoid:Q9UPN6 KO:K13191 OrthoDB:EOG45MN4V PhylomeDB:Q9UPN6
ChiTaRS:SCAF8 EvolutionaryTrace:Q9UPN6 GenomeRNAi:22828
NextBio:43242 ArrayExpress:Q9UPN6 Bgee:Q9UPN6 CleanEx:HS_RBM16
Genevestigator:Q9UPN6 GermOnline:ENSG00000146426 Uniprot:Q9UPN6
Length = 1271
Score = 144 (55.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG +D + +DL LF FG+I S+ + +GC +V +R+DA ALQKL
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 535
Query: 122 A--IGKQTVRLSWGHNPGNK 139
+ IG + ++++W N G K
Sbjct: 536 SYKIGSKVIKIAWALNKGVK 555
>UNIPROTKB|F1NW30 [details] [associations]
symbol:Gga.54017 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043175 "RNA polymerase core enzyme
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:AADN02025403
EMBL:AADN02025404 IPI:IPI00579015 Ensembl:ENSGALT00000022182
Uniprot:F1NW30
Length = 1288
Score = 144 (55.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG +D + +DL LF FG+I S+ + +GC +V +R+DA ALQKL
Sbjct: 477 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSG 536
Query: 122 A--IGKQTVRLSWGHNPGNK 139
+ IG + ++++W N G K
Sbjct: 537 SYKIGSKIIKIAWALNKGVK 556
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/109 (27%), Positives = 55/109 (50%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGF 102
EN + E + N T++ G + S ++D+ +R+ FS FG+I+ +++ KG F
Sbjct: 201 ENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSF 260
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWG-HNPG-NKQWRGDHINHW 149
V+F+ + A A+ + GT I V+ WG +P K ++ + W
Sbjct: 261 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 309
Score = 121 (47.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 110 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 169
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ + G +G + +R +W
Sbjct: 170 AIVHMGGQWLGGRQIRTNW 188
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/109 (27%), Positives = 55/109 (50%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGF 102
EN + E + N T++ G + S ++D+ +R+ FS FG+I+ +++ KG F
Sbjct: 202 ENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSF 261
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWG-HNPG-NKQWRGDHINHW 149
V+F+ + A A+ + GT I V+ WG +P K ++ + W
Sbjct: 262 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 310
Score = 121 (47.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ + G +G + +R +W
Sbjct: 171 AIVHMGGQWLGGRQIRTNW 189
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 114 (45.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 35/130 (26%), Positives = 62/130 (47%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNGS--DGKSNNAT-------IFVGA 69
+ +D NTG ++G+GF+ F D + + + ++G D K A IFVG
Sbjct: 31 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 90
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123
L+ +++ +RE F FGEI ++++P+ +G F+ F + + L+K T
Sbjct: 91 LNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTIS 150
Query: 124 GKQTVRLSWG 133
G + L G
Sbjct: 151 GSKRCGLGVG 160
Score = 37 (18.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 133 GHNPGNKQWRGDHINHWNGAHYG 155
G ++ W + N+WN YG
Sbjct: 192 GSGSQSQSWNQGYGNYWNQG-YG 213
Score = 35 (17.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 135 NPGNKQWRGDHINHW 149
N G Q RG H N++
Sbjct: 247 NYGKSQRRGGHQNNY 261
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/109 (27%), Positives = 55/109 (50%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGF 102
EN + E + N T++ G + S ++D+ +R+ FS FG+I+ +++ KG F
Sbjct: 202 ENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSF 261
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWG-HNPG-NKQWRGDHINHW 149
V+F+ + A A+ + GT I V+ WG +P K ++ + W
Sbjct: 262 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 310
Score = 121 (47.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ + G +G + +R +W
Sbjct: 171 AIVHMGGQWLGGRQIRTNW 189
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/109 (27%), Positives = 55/109 (50%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGF 102
EN + E + N T++ G + S ++D+ +R+ FS FG+I+ +++ KG F
Sbjct: 202 ENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSF 261
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWG-HNPG-NKQWRGDHINHW 149
V+F+ + A A+ + GT I V+ WG +P K ++ + W
Sbjct: 262 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 310
Score = 121 (47.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ + G +G + +R +W
Sbjct: 171 AIVHMGGQWLGGRQIRTNW 189
>UNIPROTKB|B7Z888 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 EMBL:AL121952 EMBL:AL136976 EMBL:AL591499
UniGene:Hs.591329 HGNC:HGNC:20959 HOVERGEN:HBG055796 ChiTaRS:SCAF8
OMA:YRFPPIE HOGENOM:HOG000154078 EMBL:AK303001 IPI:IPI00871240
SMR:B7Z888 STRING:B7Z888 Ensembl:ENST00000367186 UCSC:uc010kji.3
Uniprot:B7Z888
Length = 1337
Score = 144 (55.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG +D + +DL LF FG+I S+ + +GC +V +R+DA ALQKL
Sbjct: 542 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 601
Query: 122 A--IGKQTVRLSWGHNPGNK 139
+ IG + ++++W N G K
Sbjct: 602 SYKIGSKVIKIAWALNKGVK 621
>UNIPROTKB|F1SB23 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:CU633674
EMBL:FP565558 Ensembl:ENSSSCT00000004499 Uniprot:F1SB23
Length = 1347
Score = 144 (55.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG +D + +DL LF FG+I S+ + +GC +V +R+DA ALQKL
Sbjct: 554 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 613
Query: 122 A--IGKQTVRLSWGHNPGNK 139
+ IG + ++++W N G K
Sbjct: 614 SYKIGSKVIKIAWALNKGVK 633
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 104 (41.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 31/90 (34%), Positives = 45/90 (50%)
Query: 54 NGSDGKSNNA---TIFVGALDSNVSDKDLRELFSHFGE--ILSVKIPVGKGCGFVQFANR 108
NG + NNA T++VG L VS DL F G I V++ KG GFV+++
Sbjct: 249 NG-EAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH 307
Query: 109 KDAEVALQ--KLQGTAIGKQTVRLSWGHNP 136
+A +A+Q G+Q ++ SWG P
Sbjct: 308 VEAALAIQMGNTHSYLSGRQ-MKCSWGSKP 336
Score = 104 (41.7 bits), Expect = 0.00082, P = 0.00082
Identities = 24/91 (26%), Positives = 50/91 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK---GCGFVQFANRKDAEVALQKLQG 120
+++VG + V++ L+E+F+ G + S K+ + K GFV + +R+ A +A+ L G
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKL-IRKEKSSYGFVHYFDRRSAGLAILSLNG 113
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINHWNG 151
+ Q ++++W + G ++ H N + G
Sbjct: 114 RHLFGQPIKVNWAYASGQREDTSSHFNIFVG 144
Score = 103 (41.3 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
S++ IFVG L V+D L FS + ++ G+ G GFV F N++DA+
Sbjct: 136 SSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQT 195
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ ++ G +G + +R +W
Sbjct: 196 AIDEITGKWLGSRQIRCNW 214
Score = 76 (31.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
T S A+V D TG ++G+GFV F ++ + A+ E+ G
Sbjct: 164 TCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITG 202
Score = 52 (23.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 9 ITNSILQETFSRAKVTIDSNT--GHTKGYGFVRFGDENERSRAMIEMNG 55
+T +LQE F+ YGFV + D A++ +NG
Sbjct: 65 VTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNG 113
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
FV RF ER + G+ K +++ V D++LRELFS FG+ LSVK+
Sbjct: 98 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGEEVDDENLRELFSQFGKTLSVKVM 152
Query: 96 -----VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV + +DA A++++ G + +++
Sbjct: 153 RDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 190
Score = 106 (42.4 bits), Expect = 0.00063, P = 0.00063
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F ++ A A
Sbjct: 24 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKA 83
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 84 IEKMNGMLLNDRKV 97
Score = 103 (41.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 284
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 285 RIVGSKPLYVALAQR---KEERKAHLTN 309
Score = 81 (33.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F + ++A+ +MNG N+
Sbjct: 39 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGM--LLND 94
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 95 RKVFVGRFKS 104
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 136 (52.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGF 102
EN + E + N T++ G + S ++D+ +R+ FS FG+I+ +++ KG F
Sbjct: 185 ENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSF 244
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V+F+ + A A+ + GT I V+ WG
Sbjct: 245 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 275
Score = 121 (47.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 94 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 153
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ + G +G + +R +W
Sbjct: 154 AIVHMGGQWLGGRQIRTNW 172
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 124 (48.7 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
A ++V L N+S DL +F+ FG+I++ +I + KG GF++F R +AE A+Q
Sbjct: 130 ANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQ 189
Query: 117 KLQG-TAIG-KQTVRLSWGHNPGN 138
+L G T G + + + + +NP N
Sbjct: 190 ELNGKTPKGYAEPITVKFANNPSN 213
Score = 96 (38.9 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + SVK+ KG GFV N +A VA+Q L
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 335 NGYTLGNRVLQVSFKTN 351
Score = 86 (35.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGK 59
+++ D+ +G +KG GF+RF NE RA+ E+NG K
Sbjct: 159 SRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPK 197
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 106 (42.4 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
I++ LD ++D+ L+E FS FG I K+ + GKG G V F++ ++A A+ ++ G
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 363
Query: 121 TAIGKQTVRLSWG 133
+G + + ++ G
Sbjct: 364 RIVGSKPLHVTLG 376
Score = 70 (29.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68
KV D N G +KGY +V F +RA+ MNG + NN ++VG
Sbjct: 136 KVVCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGV--RLNNRQVYVG 178
Score = 43 (20.2 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
D+T +L + F A ++ D T GYG+V F + A+ MN
Sbjct: 28 DVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 118 (46.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 35/96 (36%), Positives = 50/96 (52%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI- 94
FV RF ER + G+ K +++ V D+ L+ELFS FG+ LSVK+
Sbjct: 71 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 125
Query: 95 --PVGK--GCGFVQFANRKDAEVALQKLQGTAI-GK 125
P GK G GFV + +DA A++++ G I GK
Sbjct: 126 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 161
Score = 103 (41.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 257
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 258 RIVGSKPLYVALAQR---KEERKAHLTN 282
Score = 80 (33.2 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F + +A+ +MNG N+
Sbjct: 12 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGM--LLND 67
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 68 RKVFVGRFKS 77
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 116 (45.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 33/123 (26%), Positives = 60/123 (48%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNGS--DGKSNNAT-------IFVGA 69
+ +D NTG ++G+GF+ F D + + + + ++G D K A IFVG
Sbjct: 106 IKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 165
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123
L+ +++ +RE F FGEI ++++P+ +G F+ F + L+K T
Sbjct: 166 LNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVS 225
Query: 124 GKQ 126
G +
Sbjct: 226 GSK 228
Score = 35 (17.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 135 NPGNKQWRGDHINHW 149
N G Q RG H N++
Sbjct: 268 NYGKSQRRGGHQNNY 282
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 116 (45.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 33/123 (26%), Positives = 60/123 (48%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNGS--DGKSNNAT-------IFVGA 69
+ +D NTG ++G+GF+ F D + + + + ++G D K A IFVG
Sbjct: 106 IKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 165
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123
L+ +++ +RE F FGEI ++++P+ +G F+ F + L+K T
Sbjct: 166 LNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVS 225
Query: 124 GKQ 126
G +
Sbjct: 226 GSK 228
Score = 35 (17.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 135 NPGNKQWRGDHINHW 149
N G Q RG H N++
Sbjct: 268 NYGKSQRRGGHQNNY 282
>UNIPROTKB|F1MTX3 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:DAAA02000059
IPI:IPI00711648 Ensembl:ENSBTAT00000025104 Uniprot:F1MTX3
Length = 1148
Score = 142 (55.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/111 (26%), Positives = 59/111 (53%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ R + + ++ + T++VG LD + +D+ L FG I S+ + +GC
Sbjct: 491 ERERRQKGLPQIKAETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCA 550
Query: 102 FVQFANRKDAEVALQKL-QGT-AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
++ +R+DA ALQKL +G + +++++++W N G K D+ +W+
Sbjct: 551 YIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIK---ADYKQYWD 598
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
FV RF ER + G+ K +++ V D++LRELFS FG+ LSVK+
Sbjct: 169 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGEEVDDENLRELFSQFGKTLSVKVM 223
Query: 96 -----VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV + +DA A++++ G + +++
Sbjct: 224 RDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Score = 106 (42.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F ++ A A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKA 154
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 155 IEKMNGMLLNDRKV 168
Score = 103 (41.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 356 RIVGSKPLYVALAQR---KEERKAHLTN 380
Score = 81 (33.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F + ++A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGRFKS 175
Score = 66 (28.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>UNIPROTKB|Q7ZXB5 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0017069
KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:BC045067 RefSeq:NP_001080776.1
UniGene:Xl.4959 ProteinModelPortal:Q7ZXB5 SMR:Q7ZXB5 GeneID:380469
KEGG:xla:380469 Xenbase:XB-GENE-971204 Uniprot:Q7ZXB5
Length = 417
Score = 136 (52.9 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/102 (28%), Positives = 53/102 (51%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ + KS T++VG L +S+ +LR F FGEI ++ + + C F+Q
Sbjct: 215 KRASTMPRLDPPEDKSIT-TLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQ 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
FA R+ AE A +K + + + + WG + + +H
Sbjct: 274 FATRQSAETAAEKSFNKLIVNGRRLNVKWGRSQAARGKEREH 315
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
FV RF ER + G+ K +++ V D++LRELFS FG+ LSVK+
Sbjct: 169 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGEEVDDENLRELFSQFGKTLSVKVM 223
Query: 96 -----VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV + +DA A++++ G + +++
Sbjct: 224 RDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Score = 106 (42.4 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F ++ A A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKA 154
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 155 IEKMNGMLLNDRKV 168
Score = 103 (41.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 356 RIVGSKPLYVALAQR---KEERKAHLTN 380
Score = 81 (33.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F + ++A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGRFKS 175
Score = 66 (28.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 116 (45.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 33/123 (26%), Positives = 60/123 (48%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNGS--DGKSNNAT-------IFVGA 69
+ +D NTG ++G+GF+ F D + + + + ++G D K A IFVG
Sbjct: 119 IKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 178
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123
L+ +++ +RE F FGEI ++++P+ +G F+ F + L+K T
Sbjct: 179 LNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVS 238
Query: 124 GKQ 126
G +
Sbjct: 239 GSK 241
Score = 35 (17.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 135 NPGNKQWRGDHINHW 149
N G Q RG H N++
Sbjct: 281 NYGKSQRRGGHQNNY 295
>UNIPROTKB|F1P0Y4 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:AADN02010755 IPI:IPI00596341
Ensembl:ENSGALT00000025555 ArrayExpress:F1P0Y4 Uniprot:F1P0Y4
Length = 1092
Score = 141 (54.7 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 30/111 (27%), Positives = 60/111 (54%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ RS+ + ++ + T++VG LD + +D+ L FG I S+ + +GC
Sbjct: 475 ERERRSKGLPQIKSETVSVCSTTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCA 534
Query: 102 FVQFANRKDAEVALQKL-QGT-AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
++ +R+DA ALQKL +G + +++++++W N G K D+ +W+
Sbjct: 535 YIVMVHRQDAYRALQKLSRGNFKVNQKSIKIAWALNKGIKP---DYKQYWD 582
>UNIPROTKB|F1P0Y5 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:AADN02010755
IPI:IPI00681248 Ensembl:ENSGALT00000025554 ArrayExpress:F1P0Y5
Uniprot:F1P0Y5
Length = 1092
Score = 141 (54.7 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 30/111 (27%), Positives = 60/111 (54%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ RS+ + ++ + T++VG LD + +D+ L FG I S+ + +GC
Sbjct: 475 ERERRSKGLPQIKSETVSVCSTTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCA 534
Query: 102 FVQFANRKDAEVALQKL-QGT-AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
++ +R+DA ALQKL +G + +++++++W N G K D+ +W+
Sbjct: 535 YIVMVHRQDAYRALQKLSRGNFKVNQKSIKIAWALNKGIKP---DYKQYWD 582
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 35/96 (36%), Positives = 50/96 (52%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI- 94
FV RF ER + G+ K +++ V D+ L+ELFS FG+ LSVK+
Sbjct: 169 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 223
Query: 95 --PVGK--GCGFVQFANRKDAEVALQKLQGTAI-GK 125
P GK G GFV + +DA A++++ G I GK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 108 (43.1 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 155 IEKMNGMLLNDRKV 168
Score = 103 (41.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 356 RIVGSKPLYVALAQR---KEERKAHLTN 380
Score = 80 (33.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGRFKS 175
Score = 66 (28.3 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 35/96 (36%), Positives = 51/96 (53%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI- 94
FV RF ER + G+ K +++ V D++L+ELFS FG+ LSVK+
Sbjct: 169 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 223
Query: 95 --PVGK--GCGFVQFANRKDAEVALQKLQGTAI-GK 125
P GK G GFV + +DA A++++ G I GK
Sbjct: 224 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 108 (43.1 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 155 IEKMNGMLLNDRKV 168
Score = 103 (41.3 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 356 RIVGSKPLYVALAQR---KEERKAHLTN 380
Score = 80 (33.2 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGRFKS 175
Score = 66 (28.3 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 35/96 (36%), Positives = 50/96 (52%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI- 94
FV RF ER + G+ K +++ V D+ L+ELFS FG+ LSVK+
Sbjct: 169 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 223
Query: 95 --PVGK--GCGFVQFANRKDAEVALQKLQGTAI-GK 125
P GK G GFV + +DA A++++ G I GK
Sbjct: 224 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 108 (43.1 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 155 IEKMNGMLLNDRKV 168
Score = 103 (41.3 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 356 RIVGSKPLYVALAQR---KEERKAHLTN 380
Score = 80 (33.2 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGRFKS 175
Score = 66 (28.3 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>TAIR|locus:2043157 [details] [associations]
symbol:MAC5B "MOS4-associated complex subunit 5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC004561 EMBL:AF428354
EMBL:BT002621 IPI:IPI00535091 PIR:A84698 RefSeq:NP_180518.1
UniGene:At.12692 ProteinModelPortal:Q9ZW36 SMR:Q9ZW36 PRIDE:Q9ZW36
EnsemblPlants:AT2G29580.1 GeneID:817507 KEGG:ath:AT2G29580
TAIR:At2g29580 eggNOG:NOG277760 HOGENOM:HOG000171086
InParanoid:Q9ZW36 KO:K12872 OMA:RNRAHIC PhylomeDB:Q9ZW36
ProtClustDB:CLSN2913258 Genevestigator:Q9ZW36 Uniprot:Q9ZW36
Length = 483
Score = 136 (52.9 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT-A 122
T++VG L+S V ++D+R+ F GEI S++I K C FV + R+ AE A ++L
Sbjct: 229 TLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLV 288
Query: 123 IGKQTVRLSWG 133
+ Q ++L+WG
Sbjct: 289 VNGQRLKLTWG 299
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 35/96 (36%), Positives = 50/96 (52%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI- 94
FV RF ER + G+ K +++ V D+ L+ELFS FG+ LSVK+
Sbjct: 169 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 223
Query: 95 --PVGK--GCGFVQFANRKDAEVALQKLQGTAI-GK 125
P GK G GFV + +DA A++++ G I GK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Score = 108 (43.1 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 155 IEKMNGMLLNDRKV 168
Score = 103 (41.3 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 356 RIVGSKPLYVALAQR---KEERKAHLTN 380
Score = 80 (33.2 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGRFKS 175
Score = 66 (28.3 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 120 (47.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 35/96 (36%), Positives = 51/96 (53%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI- 94
FV RF ER + G+ K +++ V D++L+ELFS FG+ LSVK+
Sbjct: 169 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 223
Query: 95 --PVGK--GCGFVQFANRKDAEVALQKLQGTAI-GK 125
P GK G GFV + +DA A++++ G I GK
Sbjct: 224 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGK 259
Score = 108 (43.1 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 155 IEKMNGMLLNDRKV 168
Score = 103 (41.3 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 356 RIVGSKPLYVALAQR---KEERKAHLTN 380
Score = 80 (33.2 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGRFKS 175
Score = 66 (28.3 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 130 (50.8 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGF 102
EN + E + S N T++ G + S ++D+ +R+ FS FG+I+ +++ K F
Sbjct: 63 ENNTKQLKFEDVVNQSSSKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKRYSF 122
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V+F+ A A+ + GT I + V+ WG
Sbjct: 123 VRFSTHGSAAHAIVSVTGTTIEGRVVKCYWG 153
>UNIPROTKB|F1LPT8 [details] [associations]
symbol:Rbm16 "Protein Rbm16" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00530000063946 IPI:IPI00211007
Ensembl:ENSRNOT00000065733 ArrayExpress:F1LPT8 Uniprot:F1LPT8
Length = 1267
Score = 141 (54.7 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG +D + +DL LF FG+I S+ + +GC +V +R+D+ ALQKL
Sbjct: 475 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSG 534
Query: 122 A--IGKQTVRLSWGHNPGNK 139
+ IG + ++++W N G K
Sbjct: 535 SYKIGSKVIKIAWALNKGVK 554
>MGI|MGI:1925212 [details] [associations]
symbol:Scaf8 "SR-related CTD-associated factor 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0043175 "RNA polymerase core enzyme binding"
evidence=ISO] [GO:0070063 "RNA polymerase binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1925212 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0006366 GO:GO:0016363 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 eggNOG:NOG306894 CTD:22828
HOVERGEN:HBG055796 KO:K13191 OrthoDB:EOG45MN4V ChiTaRS:SCAF8
EMBL:AK122451 EMBL:BC038363 EMBL:BC075621 EMBL:AK032418
EMBL:AK161113 IPI:IPI00938443 RefSeq:NP_598884.2 UniGene:Mm.124373
UniGene:Mm.486401 ProteinModelPortal:Q6DID3 SMR:Q6DID3
PhosphoSite:Q6DID3 PaxDb:Q6DID3 PRIDE:Q6DID3
Ensembl:ENSMUST00000076734 GeneID:106583 KEGG:mmu:106583
UCSC:uc008aei.2 GeneTree:ENSGT00530000063946 InParanoid:Q6DID3
OMA:YRFPPIE NextBio:358280 Bgee:Q6DID3 Genevestigator:Q6DID3
Uniprot:Q6DID3
Length = 1268
Score = 141 (54.7 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG +D + +DL LF FG+I S+ + +GC +V +R+D+ ALQKL
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSG 535
Query: 122 A--IGKQTVRLSWGHNPGNK 139
+ IG + ++++W N G K
Sbjct: 536 SYKIGSKVIKIAWALNKGVK 555
>RGD|708362 [details] [associations]
symbol:Scaf8 "SR-related CTD-associated factor 8" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0006397 "mRNA processing" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IDA] [GO:0019904 "protein domain specific binding"
evidence=IMP] [GO:0043175 "RNA polymerase core enzyme binding"
evidence=ISO] [GO:0070063 "RNA polymerase binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:708362 GO:GO:0019904 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006366
GO:GO:0016363 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG306894 CTD:22828 HOVERGEN:HBG055796
KO:K13191 OrthoDB:EOG45MN4V EMBL:U49055 IPI:IPI00211007 PIR:T31420
RefSeq:NP_620794.1 UniGene:Rn.10529 ProteinModelPortal:Q63623
SMR:Q63623 PhosphoSite:Q63623 GeneID:245926 KEGG:rno:245926
UCSC:RGD:708362 HOGENOM:HOG000154078 InParanoid:Q63623
NextBio:623189 ArrayExpress:Q63623 Genevestigator:Q63623
Uniprot:Q63623
Length = 1268
Score = 141 (54.7 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG +D + +DL LF FG+I S+ + +GC +V +R+D+ ALQKL
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSG 535
Query: 122 A--IGKQTVRLSWGHNPGNK 139
+ IG + ++++W N G K
Sbjct: 536 SYKIGSKVIKIAWALNKGVK 555
>UNIPROTKB|F1Q448 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:AAEX03016485
Ensembl:ENSCAFT00000014079 Uniprot:F1Q448
Length = 1126
Score = 140 (54.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 29/111 (26%), Positives = 59/111 (53%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ R + + ++ + T++VG LD + +D+ L FG I S+ + +GC
Sbjct: 474 ERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCA 533
Query: 102 FVQFANRKDAEVALQKL-QGT-AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
++ +R+DA ALQKL +G + +++++++W N G K D+ +W+
Sbjct: 534 YIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIK---ADYKQYWD 581
>UNIPROTKB|C9JLZ0 [details] [associations]
symbol:SCAF4 "Splicing factor, arginine/serine-rich 15"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
RefSeq:NP_001138916.1 UniGene:Hs.17255 GeneID:57466 KEGG:hsa:57466
CTD:57466 HGNC:HGNC:19304 HOGENOM:HOG000143432 KO:K13167
GenomeRNAi:57466 NextBio:63678 EMBL:AP000254 EMBL:AP000255
IPI:IPI00923625 SMR:C9JLZ0 STRING:C9JLZ0 Ensembl:ENST00000434667
UCSC:uc010glu.2 Uniprot:C9JLZ0
Length = 1132
Score = 140 (54.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 29/111 (26%), Positives = 59/111 (53%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ R + + ++ + T++VG LD + +D+ L FG I S+ + +GC
Sbjct: 472 ERERRQKGLPQVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCA 531
Query: 102 FVQFANRKDAEVALQKL-QGT-AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
++ +R+DA ALQKL +G + +++++++W N G K D+ +W+
Sbjct: 532 YIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIK---ADYKQYWD 579
>UNIPROTKB|I3LPZ9 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:FP325217
EMBL:FP325269 Ensembl:ENSSSCT00000030551 Uniprot:I3LPZ9
Length = 1132
Score = 140 (54.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 29/111 (26%), Positives = 59/111 (53%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ R + + ++ + T++VG LD + +D+ L FG I S+ + +GC
Sbjct: 494 ERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCA 553
Query: 102 FVQFANRKDAEVALQKL-QGT-AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
++ +R+DA ALQKL +G + +++++++W N G K D+ +W+
Sbjct: 554 YIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIK---ADYKQYWD 601
>UNIPROTKB|O95104 [details] [associations]
symbol:SCAF4 "Splicing factor, arginine/serine-rich 15"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AF023142 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG306894 EMBL:AL834304 EMBL:AL117417 EMBL:AP001711
EMBL:BC014921 EMBL:BC052286 EMBL:BC064990 EMBL:AB032998
IPI:IPI00181702 IPI:IPI00397794 RefSeq:NP_001138916.1
RefSeq:NP_001138917.1 RefSeq:NP_065757.1 UniGene:Hs.17255
ProteinModelPortal:O95104 SMR:O95104 IntAct:O95104
MINT:MINT-1692995 STRING:O95104 PhosphoSite:O95104 PaxDb:O95104
PRIDE:O95104 Ensembl:ENST00000286835 Ensembl:ENST00000399804
GeneID:57466 KEGG:hsa:57466 UCSC:uc002ypd.2 UCSC:uc002ype.2
CTD:57466 GeneCards:GC21M033044 HGNC:HGNC:19304 HPA:HPA018319
HPA:HPA018668 HPA:HPA021504 HPA:HPA028807 neXtProt:NX_O95104
PharmGKB:PA134903281 HOGENOM:HOG000143432 HOVERGEN:HBG055644
InParanoid:O95104 KO:K13167 OMA:QDPVHHQ OrthoDB:EOG498V17
GenomeRNAi:57466 NextBio:63678 ArrayExpress:O95104 Bgee:O95104
CleanEx:HS_SFRS15 Genevestigator:O95104 GermOnline:ENSG00000156304
Uniprot:O95104
Length = 1147
Score = 140 (54.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 29/111 (26%), Positives = 59/111 (53%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ R + + ++ + T++VG LD + +D+ L FG I S+ + +GC
Sbjct: 487 ERERRQKGLPQVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCA 546
Query: 102 FVQFANRKDAEVALQKL-QGT-AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
++ +R+DA ALQKL +G + +++++++W N G K D+ +W+
Sbjct: 547 YIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIK---ADYKQYWD 594
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 135 (52.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ IFVG L + V+D+ L + FS FG + ++ G+ G GFV F R DAE
Sbjct: 179 SNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEK 238
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPG 137
AL + G +G + +R +W + G
Sbjct: 239 ALTSMDGEWLGSRAIRCNWANQKG 262
Score = 131 (51.2 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 34/100 (34%), Positives = 55/100 (55%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-PV----GKGC--GFVQFANRKDAEV 113
N ++VG LD V++ L+++F G ++SVKI P KG GFV+F + AE
Sbjct: 88 NKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAER 147
Query: 114 ALQKLQGTAIGKQTVRLSWGH--NPGNKQWRGDHINHWNG 151
A+Q L G I + +R++W + N NK+ +H + + G
Sbjct: 148 AMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVG 187
Score = 98 (39.6 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + D+ LF +FG ++ ++ +G F++ ++A A+ +L G +
Sbjct: 309 TCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYNV 368
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 369 NGRPLKCSWG 378
Score = 82 (33.9 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 7 SDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+++ + +L + FS A+V D TG ++GYGFV F + + +A+ M+G
Sbjct: 191 NEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDG 245
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 106 (42.4 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 34/111 (30%), Positives = 52/111 (46%)
Query: 47 SRAMIEMNGSDGKSNNAT-IFVGALDSNVSDKDLRELFSHFGEILSVKI----PVG--KG 99
S + I N GK N T +FV L V D L +LFS FG++ SV++ G KG
Sbjct: 752 SSSSITSNSGGGKHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKG 811
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
GFV+F +A +++ G IG + +++ + + H H N
Sbjct: 812 YGFVKFYQTDEALKCQKEMNGFRIGSKFLKVKLKNEKESMNSGKSHHQHQN 862
Score = 106 (42.4 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVA 114
SNN +F+ L +V+D LR+LF FG+I+ K+ + K GFV+F++ DA A
Sbjct: 196 SNN--LFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKA 253
Query: 115 LQKLQGTAIGKQT 127
+ + G I K +
Sbjct: 254 IDAMNGVRINKDS 266
Score = 77 (32.2 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T+ L++ F KV +D N G +K GFVRF E + S+A+ MNG
Sbjct: 207 DVTDDQLRKLFEPFGKIIECKVMLDHN-GQSKFAGFVRFSSELDASKAIDAMNG 259
Score = 34 (17.0 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 43 ENERSRAMIEMNGSDGKSNN 62
+NE I N ++ +NN
Sbjct: 57 QNENQSLQINNNNNNNNNNN 76
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 119 (46.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 35/96 (36%), Positives = 50/96 (52%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI- 94
FV RF ER + G+ K +++ V D+ L+ELFS FG+ LSVK+
Sbjct: 209 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 263
Query: 95 --PVGK--GCGFVQFANRKDAEVALQKLQGTAI-GK 125
P GK G GFV + +DA A++++ G I GK
Sbjct: 264 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 299
Score = 108 (43.1 bits), Expect = 0.00035, P = 0.00035
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 135 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 194
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 195 IEKMNGMLLNDRKV 208
Score = 103 (41.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
+++ LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 395
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G + + ++ K+ R H+ +
Sbjct: 396 RIVGSKPLYVALAQR---KEERKAHLTN 420
Score = 80 (33.2 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGY FV F + +A+ +MNG N+
Sbjct: 150 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGM--LLND 205
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 206 RKVFVGRFKS 215
>RGD|1305770 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10116
"Rattus norvegicus" [GO:0000060 "protein import into nucleus,
translocation" evidence=IEA;ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017069 "snRNA binding"
evidence=ISO;ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISO;ISS] [GO:0033554 "cellular response to stress"
evidence=ISO;ISS] [GO:0036002 "pre-mRNA binding" evidence=ISO;ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO;ISS]
[GO:0048306 "calcium-dependent protein binding" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1305770 GO:GO:0005634 GO:GO:0005737 GO:GO:0033554 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000060
GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:BC097991 IPI:IPI00194439
RefSeq:NP_001020847.1 UniGene:Rn.105130 ProteinModelPortal:Q4V7D7
SMR:Q4V7D7 STRING:Q4V7D7 PRIDE:Q4V7D7 Ensembl:ENSRNOT00000026087
GeneID:307410 KEGG:rno:307410 UCSC:RGD:1305770 InParanoid:Q4V7D7
NextBio:657353 Genevestigator:Q4V7D7 GermOnline:ENSRNOG00000019235
Uniprot:Q4V7D7
Length = 420
Score = 134 (52.2 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ + K+ T++VG L +++ DLR F FGEI +V + + C F+Q
Sbjct: 215 KRASTMPRLDPPEDKTIT-TLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQ 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AEVA +K + + + + WG +
Sbjct: 274 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGRS 305
>UNIPROTKB|F5GWK3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC008453
IPI:IPI00909290 HGNC:HGNC:25503 ProteinModelPortal:F5GWK3
SMR:F5GWK3 Ensembl:ENST00000540000 ArrayExpress:F5GWK3 Bgee:F5GWK3
Uniprot:F5GWK3
Length = 371
Score = 133 (51.9 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ + K+ T++VG L +++ DLR F FGEI ++ + + C F+Q
Sbjct: 166 KRASTMPRLDPPEDKTIT-TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQ 224
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AEVA +K + + + + WG +
Sbjct: 225 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGRS 256
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 116 (45.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 33/123 (26%), Positives = 60/123 (48%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNGS--DGKSNNAT-------IFVGA 69
+ +D NTG ++G+GF+ F D + + + + ++G D K A IFVG
Sbjct: 105 IKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 164
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123
L+ +++ +RE F FGEI ++++P+ +G F+ F + L+K T
Sbjct: 165 LNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVS 224
Query: 124 GKQ 126
G +
Sbjct: 225 GSK 227
Score = 35 (17.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 135 NPGNKQWRGDHINHW 149
N G Q RG H N++
Sbjct: 314 NYGKSQRRGGHQNNY 328
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 116 (45.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 33/123 (26%), Positives = 60/123 (48%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNGS--DGKSNNAT-------IFVGA 69
+ +D NTG ++G+GF+ F D + + + + ++G D K A IFVG
Sbjct: 106 IKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 165
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123
L+ +++ +RE F FGEI ++++P+ +G F+ F + L+K T
Sbjct: 166 LNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVS 225
Query: 124 GKQ 126
G +
Sbjct: 226 GSK 228
Score = 35 (17.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 135 NPGNKQWRGDHINHW 149
N G Q RG H N++
Sbjct: 315 NYGKSQRRGGHQNNY 329
>RGD|727896 [details] [associations]
symbol:Scaf4 "SR-related CTD-associated factor 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:727896 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000143432 OrthoDB:EOG498V17 EMBL:U49058 IPI:IPI00211011
PIR:T31425 UniGene:Rn.101886 ProteinModelPortal:Q63627
STRING:Q63627 UCSC:RGD:727896 eggNOG:NOG326061 InParanoid:Q63627
ArrayExpress:Q63627 Genevestigator:Q63627
GermOnline:ENSRNOG00000002104 Uniprot:Q63627
Length = 1048
Score = 139 (54.0 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/111 (26%), Positives = 58/111 (52%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ R + + ++ + T++VG LD + +D+ L FG I S+ + +GC
Sbjct: 401 ERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCA 460
Query: 102 FVQFANRKDAEVALQKL-QGT-AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
++ +R+DA ALQKL +G + +++++++W N G K D +W+
Sbjct: 461 YIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIK---ADFKQYWD 508
>UNIPROTKB|I3LRX5 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IEA] [GO:0017148 "negative
regulation of translation" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
GeneTree:ENSGT00680000099967 EMBL:CU929337 RefSeq:XP_003481239.1
Ensembl:ENSSSCT00000027073 GeneID:100736894 KEGG:ssc:100736894
OMA:AGPMANQ Uniprot:I3LRX5
Length = 220
Score = 127 (49.8 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
+N T++ G + S ++++ +R+ FS FG+I+ +++ KG FV+F + + A A+ + G
Sbjct: 46 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 105
Query: 121 TAIGKQTVRLSWG 133
T I V+ WG
Sbjct: 106 TTIEGHVVKCYWG 118
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 113 (44.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 33/123 (26%), Positives = 60/123 (48%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNGS--DGKSNNAT-------IFVGA 69
+ +D NTG ++G+GF+ F D + + + ++G D K A IFVG
Sbjct: 101 IKMDPNTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 160
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123
L+ +++ +RE F FGEI ++++P+ +G F+ F + + L+K T
Sbjct: 161 LNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTIS 220
Query: 124 GKQ 126
G +
Sbjct: 221 GSK 223
Score = 35 (17.4 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 135 NPGNKQWRGDHINHW 149
N G Q RG H N++
Sbjct: 268 NYGKSQRRGGHQNNY 282
>UNIPROTKB|Q6P616 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:RNRAHIC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:CR761977 EMBL:BC062518
RefSeq:NP_989108.1 UniGene:Str.5987 ProteinModelPortal:Q6P616
SMR:Q6P616 STRING:Q6P616 Ensembl:ENSXETT00000044114 GeneID:394713
KEGG:xtr:394713 Xenbase:XB-GENE-971198 InParanoid:Q6P616
Bgee:Q6P616 Uniprot:Q6P616
Length = 417
Score = 133 (51.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ + KS T++VG L +S+ +LR F FGEI ++ + + C F+Q
Sbjct: 215 KRASTMPRLDPPEDKSIT-TLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQ 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AE+A +K + + + + WG +
Sbjct: 274 FATRQAAEMAAEKSFNKLIVNGRRLNVKWGRS 305
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 134 (52.2 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 40/135 (29%), Positives = 67/135 (49%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRA--MIEMNGSDGKS---NNAT-----------IFVGA 69
D G+ GYGFV + E E A ++ M GK+ N AT +F+G
Sbjct: 54 DKINGYHAGYGFVEYEYEYECEYAANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGN 113
Query: 70 LDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRKDAEVALQKLQGTAIG 124
LD V +K L ++FS FG+I++VK+ KG GF+ + N + +++A++ + I
Sbjct: 114 LDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFIC 173
Query: 125 KQTVRLSWGHNPGNK 139
+ V +S+ +K
Sbjct: 174 NKKVHISYAFKKDSK 188
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 134 (52.2 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 40/135 (29%), Positives = 67/135 (49%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRA--MIEMNGSDGKS---NNAT-----------IFVGA 69
D G+ GYGFV + E E A ++ M GK+ N AT +F+G
Sbjct: 54 DKINGYHAGYGFVEYEYEYECEYAANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGN 113
Query: 70 LDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRKDAEVALQKLQGTAIG 124
LD V +K L ++FS FG+I++VK+ KG GF+ + N + +++A++ + I
Sbjct: 114 LDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFIC 173
Query: 125 KQTVRLSWGHNPGNK 139
+ V +S+ +K
Sbjct: 174 NKKVHISYAFKKDSK 188
>UNIPROTKB|F1LTF2 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
IPI:IPI00950875 PRIDE:F1LTF2 Ensembl:ENSRNOT00000042311
ArrayExpress:F1LTF2 Uniprot:F1LTF2
Length = 1214
Score = 139 (54.0 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 29/111 (26%), Positives = 58/111 (52%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ R + + ++ + T++VG LD + +D+ L FG I S+ + +GC
Sbjct: 552 ERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCA 611
Query: 102 FVQFANRKDAEVALQKL-QGT-AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
++ +R+DA ALQKL +G + +++++++W N G K D +W+
Sbjct: 612 YIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIK---ADFKQYWD 659
>UNIPROTKB|F2Z4G3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
UniGene:Bt.28600 GeneTree:ENSGT00390000002792 EMBL:DAAA02020630
IPI:IPI00716918 ProteinModelPortal:F2Z4G3 SMR:F2Z4G3 PRIDE:F2Z4G3
Ensembl:ENSBTAT00000042873 NextBio:20925883 Uniprot:F2Z4G3
Length = 420
Score = 133 (51.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ + K+ T++VG L +++ DLR F FGEI ++ + + C F+Q
Sbjct: 215 KRASTMPRLDPPEDKTIT-TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQ 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AEVA +K + + + + WG +
Sbjct: 274 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGRS 305
>UNIPROTKB|Q9NW64 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000060 "protein import into nucleus,
translocation" evidence=IDA] [GO:0048306 "calcium-dependent protein
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IDA] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=IDA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IDA]
[GO:0017069 "snRNA binding" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0005737 EMBL:CH471062 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 EMBL:AC008453
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW
EMBL:AL136933 EMBL:AK001152 EMBL:AK297019 EMBL:BC003402 EMBL:U39402
IPI:IPI00019046 IPI:IPI00909290 RefSeq:NP_060517.1
UniGene:Hs.713564 PDB:2YTC PDBsum:2YTC ProteinModelPortal:Q9NW64
SMR:Q9NW64 IntAct:Q9NW64 STRING:Q9NW64 PhosphoSite:Q9NW64
DMDM:74762758 PaxDb:Q9NW64 PRIDE:Q9NW64 DNASU:55696
Ensembl:ENST00000199814 Ensembl:ENST00000447771 GeneID:55696
KEGG:hsa:55696 UCSC:uc003lst.3 GeneCards:GC05M150050
HGNC:HGNC:25503 HPA:HPA001634 MIM:612430 neXtProt:NX_Q9NW64
PharmGKB:PA134982384 InParanoid:Q9NW64 EvolutionaryTrace:Q9NW64
GenomeRNAi:55696 NextBio:60521 ArrayExpress:Q9NW64 Bgee:Q9NW64
CleanEx:HS_RBM22 Genevestigator:Q9NW64 GermOnline:ENSG00000086589
Uniprot:Q9NW64
Length = 420
Score = 133 (51.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ + K+ T++VG L +++ DLR F FGEI ++ + + C F+Q
Sbjct: 215 KRASTMPRLDPPEDKTIT-TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQ 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AEVA +K + + + + WG +
Sbjct: 274 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGRS 305
>UNIPROTKB|Q4R4J1 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9541
"Macaca fascicularis" [GO:0005487 "nucleocytoplasmic transporter
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006913
"nucleocytoplasmic transport" evidence=ISS] [GO:0017069 "snRNA
binding" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:AB169903
ProteinModelPortal:Q4R4J1 SMR:Q4R4J1 PRIDE:Q4R4J1 Uniprot:Q4R4J1
Length = 420
Score = 133 (51.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ + K+ T++VG L +++ DLR F FGEI ++ + + C F+Q
Sbjct: 215 KRASTMPRLDPPEDKTIT-TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQ 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AEVA +K + + + + WG +
Sbjct: 274 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGRS 305
>UNIPROTKB|Q5RAY5 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9601
"Pongo abelii" [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0033120
"positive regulation of RNA splicing" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 HSSP:Q6PHZ5
EMBL:CR858876 RefSeq:NP_001125624.1 UniGene:Pab.12645
ProteinModelPortal:Q5RAY5 SMR:Q5RAY5 GeneID:100172542
KEGG:pon:100172542 InParanoid:Q5RAY5 Uniprot:Q5RAY5
Length = 420
Score = 133 (51.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ + K+ T++VG L +++ DLR F FGEI ++ + + C F+Q
Sbjct: 215 KRASTMPRLDPPEDKTIT-TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQ 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AEVA +K + + + + WG +
Sbjct: 274 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGRS 305
>MGI|MGI:1914060 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10090
"Mus musculus" [GO:0000060 "protein import into nucleus,
translocation" evidence=ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=ISO] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISO] [GO:0033554 "cellular response to stress"
evidence=ISO] [GO:0036002 "pre-mRNA binding" evidence=ISO]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048306
"calcium-dependent protein binding" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 MGI:MGI:1914060 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:ILADKAC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:AK018452 EMBL:AK045116
EMBL:AK150271 EMBL:AK151758 EMBL:AK152252 EMBL:AK166600
EMBL:AK167509 EMBL:AK168919 EMBL:BC080205 IPI:IPI00221951
RefSeq:NP_080052.1 UniGene:Mm.275106 ProteinModelPortal:Q8BHS3
SMR:Q8BHS3 STRING:Q8BHS3 PhosphoSite:Q8BHS3 PaxDb:Q8BHS3
PRIDE:Q8BHS3 Ensembl:ENSMUST00000025506 GeneID:66810 KEGG:mmu:66810
UCSC:uc008fal.1 InParanoid:Q8BHS3 ChiTaRS:RBM22 NextBio:322703
Bgee:Q8BHS3 CleanEx:MM_RBM22 Genevestigator:Q8BHS3
GermOnline:ENSMUSG00000024604 Uniprot:Q8BHS3
Length = 420
Score = 133 (51.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ + K+ T++VG L +++ DLR F FGEI ++ + + C F+Q
Sbjct: 215 KRASTMPRLDPPEDKTIT-TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQ 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AEVA +K + + + + WG +
Sbjct: 274 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGRS 305
>UNIPROTKB|F1LSM7 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00530000063946 IPI:IPI00211011
Ensembl:ENSRNOT00000047741 ArrayExpress:F1LSM7 Uniprot:F1LSM7
Length = 1226
Score = 139 (54.0 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 29/111 (26%), Positives = 58/111 (52%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ R + + ++ + T++VG LD + +D+ L FG I S+ + +GC
Sbjct: 557 ERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCA 616
Query: 102 FVQFANRKDAEVALQKL-QGT-AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
++ +R+DA ALQKL +G + +++++++W N G K D +W+
Sbjct: 617 YIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIK---ADFKQYWD 664
>UNIPROTKB|E2RG35 [details] [associations]
symbol:RBM22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
GeneTree:ENSGT00390000002792 EMBL:AAEX03003093
ProteinModelPortal:E2RG35 Ensembl:ENSCAFT00000028740 Uniprot:E2RG35
Length = 422
Score = 133 (51.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ + K+ T++VG L +++ DLR F FGEI ++ + + C F+Q
Sbjct: 217 KRASTMPRLDPPEDKTIT-TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQ 275
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AEVA +K + + + + WG +
Sbjct: 276 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGRS 307
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 131 (51.2 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 38/143 (26%), Positives = 66/143 (46%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
AK+ D GH+ GYGFV + + RA+ +NG S +A +
Sbjct: 49 AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANL 108
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
++ L N++ KD+ ++FS FG I++ ++ V +G F++F R +AE A+
Sbjct: 109 YISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN 168
Query: 120 GTAI--GKQTVRLSWGHNPG-NK 139
G + + + + NP NK
Sbjct: 169 GHKPPGSSEPITVKFAANPNQNK 191
Score = 111 (44.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G++N + V L N++ +LR LFS GE+ S K+ K G GFV + KDA
Sbjct: 18 GRTN---LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 112 EVALQKLQGTAIGKQTVRLSW 132
E A+ L G + +T+++S+
Sbjct: 75 ERAINTLNGLRLQSKTIKVSY 95
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 107 (42.7 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ +G GFV F ++ A A
Sbjct: 95 KSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRA 154
Query: 115 LQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+Q + G + + V + GH K+
Sbjct: 155 IQTMNGMLLNDRKVFV--GHFKSRKE 178
Score = 102 (41.0 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 119
+++ ++ D LRE+FS FG+ LSVK+ + KG GFV F ++A+ A+ +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 120 GTAIGKQTV 128
G I + V
Sbjct: 253 GKEINGRMV 261
Score = 79 (32.9 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G ++G+GFV F + +RA+ MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN-G-SRGHGFVHFETQEAATRAIQTMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGHFKS 175
Score = 57 (25.1 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
D+T ++L E FS A +V D + + GY ++ F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTMN 73
>FB|FBgn0034598 [details] [associations]
symbol:CG4266 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
KO:K13191 GeneTree:ENSGT00530000063946 RefSeq:NP_001097394.1
UniGene:Dm.4151 ProteinModelPortal:A8DYK5 SMR:A8DYK5 STRING:A8DYK5
EnsemblMetazoa:FBtr0113100 GeneID:37411 KEGG:dme:Dmel_CG4266
UCSC:CG4266-RB FlyBase:FBgn0034598 OMA:RAITISW OrthoDB:EOG4NK99F
PhylomeDB:A8DYK5 GenomeRNAi:37411 NextBio:803495 Bgee:A8DYK5
Uniprot:A8DYK5
Length = 1306
Score = 130 (50.8 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG L V ++L + F +G+I+S+ V +GC F+ R+DA A+Q L+
Sbjct: 491 STTLWVGHLSKLVYQEELSDTFGEYGDIVSIDQIVPRGCAFIVMNRRQDAHKAMQALKNH 550
Query: 122 AIGKQTVRLSWGHNPG--NKQWR 142
+ + + +SW G +K+W+
Sbjct: 551 KLQGRAITISWAAGKGVKSKEWK 573
Score = 35 (17.4 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 136 PGNKQWRG 143
PGN +W G
Sbjct: 837 PGNSRWGG 844
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 40/142 (28%), Positives = 68/142 (47%)
Query: 22 KVTIDSNT-GHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D T G + GYGFV + D + +A+ +NG S +A +
Sbjct: 96 KLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 155
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 215
Query: 120 GTAIGKQT--VRLSWGHNPGNK 139
G T + + + +NP K
Sbjct: 216 GQKPPGATEPITVKFANNPSQK 237
Score = 112 (44.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 51 IEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK-------GCGFV 103
+E N ++ N + V L N++ ++L+ LF GEI S K+ K G GFV
Sbjct: 56 VESNNTEDSKTN--LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFV 113
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+ + KDAE A+ L G + +T+++S+
Sbjct: 114 NYIDPKDAEKAINTLNGLRLQTKTIKVSY 142
>UNIPROTKB|B0QYV1 [details] [associations]
symbol:RBM9 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044 InterPro:IPR025670
Pfam:PF12414 EMBL:AL079295 IPI:IPI00843981 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
SMR:B0QYV1 STRING:B0QYV1 Ensembl:ENST00000397303 Uniprot:B0QYV1
Length = 357
Score = 131 (51.2 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 73 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 131
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 132 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 191
Query: 152 AHYG 155
A YG
Sbjct: 192 AVYG 195
>FB|FBgn0036496 [details] [associations]
symbol:CG7804 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P09651 eggNOG:NOG145464
GeneTree:ENSGT00570000079202 EMBL:AY118452 RefSeq:NP_648764.1
UniGene:Dm.13628 SMR:Q9VUN2 EnsemblMetazoa:FBtr0075617
EnsemblMetazoa:FBtr0332815 GeneID:39665 KEGG:dme:Dmel_CG7804
UCSC:CG7804-RA FlyBase:FBgn0036496 InParanoid:Q9VUN2 OMA:EPKHNNS
OrthoDB:EOG43XSK6 GenomeRNAi:39665 NextBio:814765 Uniprot:Q9VUN2
Length = 318
Score = 130 (50.8 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 20 RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGK------------SNN--ATI 65
+A++ D+ +GH+KG+GFVRFG + + + + + DG+ N +
Sbjct: 135 KAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEPGKV 194
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPVG-KGCGFVQF 105
FVG ++ DLRE FS FGE++ V IP + FV F
Sbjct: 195 FVGRCTEDIEADDLREYFSKFGEVIDVFIPKPFRAFSFVTF 235
>ZFIN|ZDB-GENE-040426-2386 [details] [associations]
symbol:trnau1apl "tRNA selenocysteine 1 associated
protein 1, like" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2386 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234338 OrthoDB:EOG44BB34 EMBL:BC098884
IPI:IPI00833586 UniGene:Dr.5347 ProteinModelPortal:Q4KM14
SMR:Q4KM14 STRING:Q4KM14 PRIDE:Q4KM14 InParanoid:Q4KM14
ArrayExpress:Q4KM14 Uniprot:Q4KM14
Length = 316
Score = 107 (42.7 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 64 TIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG--KGCGFVQFANRKDAEVALQK 117
++FVG L S V D L + F F K+ P G +G GFV+F++ + + AL++
Sbjct: 100 SVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSRGYGFVKFSDENEQKKALEE 159
Query: 118 LQGTA-IGKQTVRLSWGHNPGNK 139
Q + +G + +R+S N GNK
Sbjct: 160 FQNASGLGGKPIRISIAVNKGNK 182
Score = 60 (26.2 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S + ET K+ TG + GY FV DE R + +NG
Sbjct: 27 STMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNG 70
>UNIPROTKB|B0QYY7 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z95114 EMBL:AL049748
HOVERGEN:HBG000044 EMBL:AL079295 HGNC:HGNC:9906 ChiTaRS:RBFOX2
HOGENOM:HOG000230971 EMBL:Z82217 IPI:IPI00878853 SMR:B0QYY7
STRING:B0QYY7 Ensembl:ENST00000408983 Uniprot:B0QYY7
Length = 200
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 115 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 173
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI 123
G GFV F N DA+ A +KL GT +
Sbjct: 174 GFGFVTFENSADADRAREKLHGTVV 198
>UNIPROTKB|Q3B7L8 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISS] [GO:0090316
"positive regulation of intracellular protein transport"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
EMBL:BC107551 IPI:IPI00709529 RefSeq:NP_001032907.1
UniGene:Bt.28600 ProteinModelPortal:Q3B7L8 SMR:Q3B7L8 PRIDE:Q3B7L8
GeneID:512330 KEGG:bta:512330 CTD:55696 HOVERGEN:HBG083475
InParanoid:Q3B7L8 OrthoDB:EOG40S0FW NextBio:20870344 Uniprot:Q3B7L8
Length = 420
Score = 132 (51.5 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ M ++ + K+ T++VG L +++ DLR F FGEI ++ + + C F+Q
Sbjct: 215 KRASTMPRLDPPEDKTIT-TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQ 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN 135
FA R+ AEVA +K + + + + WG +
Sbjct: 274 FATRQAAEVAAEKSFNKFIVNGRRLNVKWGRS 305
>UNIPROTKB|B0QYY4 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AL079295 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
IPI:IPI01025028 SMR:B0QYY4 STRING:B0QYY4 Ensembl:ENST00000359369
UCSC:uc010gwu.3 Uniprot:B0QYY4
Length = 370
Score = 131 (51.2 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 72 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 130
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 131 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 190
Query: 152 AHYG 155
A YG
Sbjct: 191 AVYG 194
>UNIPROTKB|J9P300 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 CTD:23543 EMBL:AAEX03007352 RefSeq:XP_862055.2
Ensembl:ENSCAFT00000049108 GeneID:481281 KEGG:cfa:481281
Uniprot:J9P300
Length = 376
Score = 131 (51.2 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 92 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 150
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 151 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 210
Query: 152 AHYG 155
A YG
Sbjct: 211 AVYG 214
>UNIPROTKB|F1M2V8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00778339
Ensembl:ENSRNOT00000006398 ArrayExpress:F1M2V8 Uniprot:F1M2V8
Length = 377
Score = 131 (51.2 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 92 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 150
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 151 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 210
Query: 152 AHYG 155
A YG
Sbjct: 211 AVYG 214
>UNIPROTKB|F1LUP8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00389932
Ensembl:ENSRNOT00000033626 ArrayExpress:F1LUP8 Uniprot:F1LUP8
Length = 380
Score = 131 (51.2 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 92 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 150
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 151 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 210
Query: 152 AHYG 155
A YG
Sbjct: 211 AVYG 214
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 132 (51.5 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 41/147 (27%), Positives = 70/147 (47%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + + + +A+ +NG S A ++
Sbjct: 140 KLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLY 199
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI-----------PVGKGCGFVQFANRKDAEVAL 115
V L N++ DL LFS +G+I++ +I + KG GF++F R +A+ A+
Sbjct: 200 VSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAI 259
Query: 116 QKLQGTAIGKQT--VRLSWGHNPG-NK 139
++L GT T + + + +NP NK
Sbjct: 260 KELNGTTPKNSTEPITVKFANNPSSNK 286
Score = 114 (45.2 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 29/111 (26%), Positives = 53/111 (47%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK--- 98
+ N + A N ++ + V L +S ++R LF FGE+ S K+ K
Sbjct: 89 NNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTG 148
Query: 99 ---GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHI 146
G GFV + ++DAE A+ L G + +T+++S P ++ +G ++
Sbjct: 149 QSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIAR-PSSESIKGANL 198
Score = 104 (41.7 bits), Expect = 0.00089, P = 0.00089
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFA 106
+ G+ S+ IFV L + + L +LF FG + SVK+ KG GFV
Sbjct: 351 IQGNTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMT 410
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
N ++A +A+Q L G +G + +++S+ N NKQ
Sbjct: 411 NYEEAVLAIQSLNGYTLGNRVLQVSFKTNK-NKQ 443
>UNIPROTKB|F1P8W1 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AAEX03007352 Ensembl:ENSCAFT00000002662
Uniprot:F1P8W1
Length = 390
Score = 131 (51.2 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 102 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 160
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 161 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 220
Query: 152 AHYG 155
A YG
Sbjct: 221 AVYG 224
>UNIPROTKB|O43251 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042127 "regulation of cell
proliferation" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0008134 GO:GO:0016070 EMBL:AL049748
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
EMBL:AY072786 EMBL:AF229058 EMBL:AY960684 EMBL:AL009266
EMBL:CR456559 EMBL:AK055213 EMBL:AK291460 EMBL:DQ778625
EMBL:AL079295 EMBL:BC013115 EMBL:BC025281 EMBL:AM419009
IPI:IPI00011618 IPI:IPI00179299 IPI:IPI00258168 IPI:IPI00258170
IPI:IPI00554810 IPI:IPI00843981 IPI:IPI00844525 IPI:IPI00844603
IPI:IPI00885127 IPI:IPI00937652 RefSeq:NP_001026865.1
RefSeq:NP_001076045.1 RefSeq:NP_001076046.1 RefSeq:NP_001076047.1
RefSeq:NP_001076048.1 RefSeq:NP_055124.1 UniGene:Hs.282998 PDB:2CQ3
PDBsum:2CQ3 ProteinModelPortal:O43251 SMR:O43251 IntAct:O43251
MINT:MINT-1437920 STRING:O43251 PhosphoSite:O43251 PaxDb:O43251
PRIDE:O43251 DNASU:23543 Ensembl:ENST00000262829
Ensembl:ENST00000405409 Ensembl:ENST00000414461
Ensembl:ENST00000416721 Ensembl:ENST00000438146
Ensembl:ENST00000449924 GeneID:23543 KEGG:hsa:23543 UCSC:uc003aoh.4
UCSC:uc003aoj.4 UCSC:uc003aok.4 UCSC:uc003aol.4 UCSC:uc003aom.4
UCSC:uc003aon.4 UCSC:uc003aoo.4 CTD:23543 GeneCards:GC22M036136
H-InvDB:HIX0016419 HGNC:HGNC:9906 HPA:HPA006240 MIM:612149
neXtProt:NX_O43251 PharmGKB:PA34272 InParanoid:O43251 OMA:HGEQSTN
ChiTaRS:RBFOX2 EvolutionaryTrace:O43251 GenomeRNAi:23543
NextBio:46058 ArrayExpress:O43251 Bgee:O43251 CleanEx:HS_RBM9
Genevestigator:O43251 GermOnline:ENSG00000100320 Uniprot:O43251
Length = 390
Score = 131 (51.2 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 102 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 160
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 161 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 220
Query: 152 AHYG 155
A YG
Sbjct: 221 AVYG 224
>UNIPROTKB|F1RKX4 [details] [associations]
symbol:RBFOX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008022 "protein C-terminus binding" evidence=IEA]
[GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005802 GeneTree:ENSGT00390000013767
EMBL:CU464000 EMBL:CU694874 Ensembl:ENSSSCT00000008677 OMA:PPENTEN
Uniprot:F1RKX4
Length = 234
Score = 126 (49.4 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 38/111 (34%), Positives = 54/111 (48%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 114 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 173
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----GAHYG 155
+ A +KL GT + G++ V + NK+ + N W GA YG
Sbjct: 174 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLIPVVGAVYG 224
>UNIPROTKB|F1SPT7 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:CU633647 Ensembl:ENSSSCT00000000160 Uniprot:F1SPT7
Length = 392
Score = 131 (51.2 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 108 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 166
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 167 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 226
Query: 152 AHYG 155
A YG
Sbjct: 227 AVYG 230
>UNIPROTKB|A6QPR6 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9913 "Bos taurus" [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0008134 GO:GO:0030520 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS EMBL:BC149447
EMBL:BT026301 IPI:IPI00685735 IPI:IPI00886713 UniGene:Bt.3013
ProteinModelPortal:A6QPR6 SMR:A6QPR6 eggNOG:NOG293807
InParanoid:A6QPR6 Uniprot:A6QPR6
Length = 394
Score = 131 (51.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 110 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 168
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 169 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 228
Query: 152 AHYG 155
A YG
Sbjct: 229 AVYG 232
>UNIPROTKB|F1N2A9 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0003714
GO:GO:0045892 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 InterPro:IPR025670
Pfam:PF12414 IPI:IPI00685735 OMA:HGEQSTN EMBL:DAAA02013800
Ensembl:ENSBTAT00000026808 Uniprot:F1N2A9
Length = 398
Score = 131 (51.2 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 110 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 168
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 169 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 228
Query: 152 AHYG 155
A YG
Sbjct: 229 AVYG 232
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 108 (43.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG+ILS K+ +G GFV F ++ A A
Sbjct: 95 KSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRA 154
Query: 115 LQKLQGTAIGKQTVRLSWGH 134
+Q + G + + V + GH
Sbjct: 155 IQTMNGMLLNDRKVFV--GH 172
Score = 105 (42.0 bits), Expect = 0.00096, P = 0.00096
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E FS KV +D N+G ++G+GFV +G+ E +A+ EMNG + N
Sbjct: 201 DMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKE--VN 257
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI 94
++VG + + EL F +I +I
Sbjct: 258 GRMVYVGRAQKRIERQG--ELKRKFEQIKQERI 288
Score = 103 (41.3 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 119
+++ ++ DK L+E+FS FG LSVK+ + +G GFV + N ++A+ A+ ++
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 120 GTAIGKQTV 128
G + + V
Sbjct: 253 GKEVNGRMV 261
Score = 88 (36.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
++V LD + D LR+ FS +G I S K+ KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAI 123
+
Sbjct: 356 RIV 358
Score = 76 (31.8 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D G ++GYGFV F + +RA+ MNG N+
Sbjct: 110 IDNKALYDTFSAFGDILSCKVVCDEY-G-SRGYGFVHFETQEAANRAIQTMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGHFKS 175
Score = 61 (26.5 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
D+T ++L E FS A +V D T + GY ++ F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMN 73
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 129 (50.5 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTA 122
A I++G L S VS+KD+ F +G+I V + G GFV+F +++DAE A+ L G
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK--NGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 123 IGKQTVRLSWGHNPGNKQWRG 143
+G + V L + G RG
Sbjct: 61 LGGERVILDYSKPRGGGGDRG 81
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 129 (50.5 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTA 122
A I++G L S VS+KD+ F +G+I V + G GFV+F +++DAE A+ L G
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK--NGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 123 IGKQTVRLSWGHNPGNKQWRG 143
+G + V L + G RG
Sbjct: 61 LGGERVILDYSKPRGGGGDRG 81
>RGD|1560070 [details] [associations]
symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C. elegans)
3" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043025 "neuronal cell body"
evidence=IEA;ISO] [GO:0097458 "neuron part" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
RGD:1560070 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0003677 GO:GO:0043025 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473948 GO:GO:0000381
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 OrthoDB:EOG4NVZKS CTD:146713 OMA:LQASLCR
IPI:IPI00370377 RefSeq:NP_001127970.1 UniGene:Rn.143966
Ensembl:ENSRNOT00000004524 GeneID:287847 KEGG:rno:287847
NextBio:627138 Uniprot:D4A2H6
Length = 375
Score = 130 (50.8 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 45/143 (31%), Positives = 67/143 (46%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG--KSNNATIFVGALDSNVSDKDLRELF 83
+++T G V DE ++ + +++ SD K + V + D DLR++F
Sbjct: 61 EASTQPIAGTQTVPQADEAAQTDSQ-QLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMF 119
Query: 84 SHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAI-GKQ------TVRLSW 132
FG+IL V+I KG GFV F DA+ A +KL GT + G++ T R+
Sbjct: 120 GQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMT 179
Query: 133 GHNPGNKQWRGDHINHWNGAHYG 155
PGN G +N GA YG
Sbjct: 180 NKKPGNPYANGWKLNPVVGAVYG 202
>RGD|1311838 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C. elegans)
2" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0010724 "regulation of definitive erythrocyte differentiation"
evidence=IEA;ISO] [GO:0021942 "radial glia guided migration of
Purkinje cell" evidence=ISO] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=ISO;ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;ISS]
[GO:0048813 "dendrite morphogenesis" evidence=ISO] [GO:0050885
"neuromuscular process controlling balance" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 RGD:1311838
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
CTD:23543 EMBL:BC128766 IPI:IPI00950010 RefSeq:NP_001073364.1
UniGene:Rn.137551 ProteinModelPortal:A1A5R1 SMR:A1A5R1
Ensembl:ENSRNOT00000066431 GeneID:362950 KEGG:rno:362950
UCSC:RGD:1311838 InParanoid:A1A5R1 NextBio:681892
ArrayExpress:A1A5R1 Genevestigator:A1A5R1 Uniprot:A1A5R1
Length = 432
Score = 131 (51.2 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 144 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 202
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 203 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 262
Query: 152 AHYG 155
A YG
Sbjct: 263 AVYG 266
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 132 (51.5 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 35/112 (31%), Positives = 55/112 (49%)
Query: 49 AMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGF 102
A I N ++ + IFVG L V+D+ LR FS F + + +G GF
Sbjct: 159 AAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGF 218
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHY 154
V F N+ DAE+ALQ + G + + +R +W + +Q + H N+ +G Y
Sbjct: 219 VTFGNQSDAELALQTMNGEWLCGRAIRCNWASH--KQQQQQQHYNNQHGGGY 268
Score = 92 (37.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T+++G + ++L L +FG I+ K +GC FV++ + A +A+ +L G +
Sbjct: 413 TVYLGNIAHFTQQQELIPLLQNFGFIVDFKFHPERGCAFVKYDTHERAALAIIQLAGFNL 472
Query: 124 GKQTVRLSWG 133
+ ++ WG
Sbjct: 473 NGRPLKCGWG 482
Score = 85 (35.0 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
E+ +A V D T ++GYGFV FG++++ A+ MNG
Sbjct: 197 ESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNG 236
>MGI|MGI:1933973 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C.
elegans) 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IGI;IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IDA] [GO:0021942 "radial glia guided migration of Purkinje
cell" evidence=IMP] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0050885 "neuromuscular process
controlling balance" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933973
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1
OrthoDB:EOG4NVZKS eggNOG:NOG293807 CTD:23543 OMA:HGEQSTN
ChiTaRS:RBFOX2 EMBL:AF387322 EMBL:AY659951 EMBL:AY659952
EMBL:AY659953 EMBL:AF229055 EMBL:AY904025 EMBL:DQ017388
EMBL:DQ017389 EMBL:AK044929 EMBL:AK077594 EMBL:BC002124
EMBL:BC027263 IPI:IPI00153656 IPI:IPI00223425 IPI:IPI00331207
IPI:IPI00606741 IPI:IPI00785326 IPI:IPI00877224 IPI:IPI00877264
IPI:IPI00877283 IPI:IPI00886410 RefSeq:NP_001104297.1
RefSeq:NP_001104298.1 RefSeq:NP_001104299.1 RefSeq:NP_001104300.1
RefSeq:NP_444334.3 RefSeq:NP_780596.1 UniGene:Mm.202774
ProteinModelPortal:Q8BP71 SMR:Q8BP71 STRING:Q8BP71
PhosphoSite:Q8BP71 PaxDb:Q8BP71 PRIDE:Q8BP71
Ensembl:ENSMUST00000048145 Ensembl:ENSMUST00000111581
Ensembl:ENSMUST00000166610 Ensembl:ENSMUST00000171751 GeneID:93686
KEGG:mmu:93686 UCSC:uc007wnc.2 UCSC:uc007wnd.2 UCSC:uc007wne.2
UCSC:uc007wnf.2 UCSC:uc007wng.2 UCSC:uc007wni.2 UCSC:uc011zvf.1
UCSC:uc011zvg.1 NextBio:351415 Bgee:Q8BP71 CleanEx:MM_RBM9
Genevestigator:Q8BP71 Uniprot:Q8BP71
Length = 449
Score = 131 (51.2 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N S+ KS + V + D DLR++F FG+IL V+I K
Sbjct: 161 DGQQSQTQSSEN-SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 219
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 220 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 279
Query: 152 AHYG 155
A YG
Sbjct: 280 AVYG 283
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 127 (49.8 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG I ++ GK G GFV F N+ DAE
Sbjct: 88 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 147
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+Q++ G +G + +R +W
Sbjct: 148 AIQQMGGQWLGGRQIRTNW 166
Score = 86 (35.3 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
S N T++ G + S ++++ +R+ FS FG+I+ +++ KG F++
Sbjct: 192 SQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIR 240
Score = 73 (30.8 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 118 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 154
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 127 (49.8 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG I ++ GK G GFV F N+ DAE
Sbjct: 92 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 151
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+Q++ G +G + +R +W
Sbjct: 152 AIQQMGGQWLGGRQIRTNW 170
Score = 85 (35.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+N T++ G + S ++++ +R+ FS FG+I+ +++ KG FV+
Sbjct: 201 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVR 244
Score = 73 (30.8 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 158
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 128 (50.1 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 31/84 (36%), Positives = 53/84 (63%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PV-GKGCGFVQFAN 107
M DG S ++VG L +++++ +R +FS +G +L+VKI V GK GFV F+N
Sbjct: 1 MTMDDGNS----VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSN 56
Query: 108 RKDAEVALQKLQGTAIGKQTVRLS 131
R+ A+ A++ + G +IG + VR++
Sbjct: 57 RRSADDAIEDMDGKSIGGRAVRVN 80
>UNIPROTKB|F1M994 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 IPI:IPI00454233
Ensembl:ENSRNOT00000002881 ArrayExpress:F1M994 Uniprot:F1M994
Length = 917
Score = 134 (52.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/91 (30%), Positives = 52/91 (57%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL-QG 120
+ T++VG LD + +D+ L FG I S+ + +GC ++ +R+DA ALQKL +G
Sbjct: 554 STTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRG 613
Query: 121 T-AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
+ +++++++W N G K D +W+
Sbjct: 614 NYKVNQKSIKIAWALNKGIK---ADFKQYWD 641
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 111 (44.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEV 113
K +F+ LD + +K L + FS FG+ILS K+ V KG GFV F + + A
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANA 223
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
A++ + G + + V + GH+ ++
Sbjct: 224 AIEHVNGMLLNDKKVYV--GHHVSRRE 248
Score = 97 (39.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEV 113
K+N +++ LD+ +++++ +LF FGEI S+ + +G GFV +AN + A+
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQK 316
Query: 114 ALQKL 118
A+ +L
Sbjct: 317 AVDEL 321
Score = 84 (34.6 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 27/67 (40%), Positives = 35/67 (52%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIE-MNGSDGKSN 61
I N L +TFS KV +D G+ KGYGFV F D E + A IE +NG N
Sbjct: 179 IDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHF-DSVESANAAIEHVNGM--LLN 234
Query: 62 NATIFVG 68
+ ++VG
Sbjct: 235 DKKVYVG 241
Score = 78 (32.5 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEV 113
K +F+ L V D+ L+ FS FG I S KI KG GFV + ++A
Sbjct: 360 KYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANK 419
Query: 114 ALQKL-QGTAIGK 125
A+ ++ Q GK
Sbjct: 420 AVTEMNQRMLAGK 432
Score = 51 (23.0 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 9 ITNSILQETFSR----AKVTI--DSNTGHTKGYGFVRFGDENERSRAMIEMN 54
+T ++L E F+ A + + D+ T + GY +V F + + +A+ E+N
Sbjct: 91 VTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELN 142
>UNIPROTKB|F1NCA4 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003714 "transcription
corepressor activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AADN02006252 EMBL:AADN02006253 IPI:IPI00583090
Ensembl:ENSGALT00000020480 Uniprot:F1NCA4
Length = 377
Score = 128 (50.1 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 40/124 (32%), Positives = 60/124 (48%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----K 98
+ ++S+ N ++ KS + V + D DLR++F FG+IL V+I K
Sbjct: 93 DGQQSQTQSSEN-TESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 151
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHWN-----G 151
G GFV F N DA+ A +KL GT + G++ V + NK+ + N W G
Sbjct: 152 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG 211
Query: 152 AHYG 155
A YG
Sbjct: 212 AVYG 215
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 111 (44.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEV 113
++ N IF+ LD + +K + + FS FG ILS K+ KG GFV F A+
Sbjct: 141 RAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQT 200
Query: 114 ALQKLQGTAIGKQTV 128
A++K+ G + + V
Sbjct: 201 AIEKVNGMLLSDKKV 215
Score = 55 (24.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
D++ ++L E FS A +V D+ + + GY +V F + RA+ MN
Sbjct: 67 DVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMN 119
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS IF+ LD ++ +K L + FS FG ILS K+ KG GFV F + AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERA 154
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 155 IEKMNGMLLNDRKV 168
Score = 94 (38.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
++V LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAIGKQTVRLSWGHNPGNKQ 140
+ + + ++ +Q
Sbjct: 356 RIVATKPLYVALAQRKEERQ 375
Score = 87 (35.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 28/70 (40%), Positives = 34/70 (48%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N G +KGYGFV F RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYGFVHFETHEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGRFKS 175
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 36/89 (40%), Positives = 48/89 (53%)
Query: 43 ENERSRAMIEMNGSDG--KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG 97
E E SR E SDG K + ++V LD V+D+ LRELF+ FG I S K+ P G
Sbjct: 307 ELELSRRY-EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSG 365
Query: 98 --KGCGFVQFANRKDAEVALQKLQGTAIG 124
KG GFV F+ +A L ++ G +G
Sbjct: 366 TSKGSGFVAFSAASEASRVLNEMNGKMVG 394
Score = 120 (47.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/97 (28%), Positives = 54/97 (55%)
Query: 55 GSDGKSNNA--TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
G DG ++ A +++VG LD NV+D L + F+ +++SV++ G G+V ++
Sbjct: 36 GGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYS 95
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
N DAE A+QKL + + + +R+++ + + G
Sbjct: 96 NTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSG 132
Score = 107 (42.7 bits), Expect = 0.00047, P = 0.00047
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANR 108
+ S +S +FV LD +V +K L E FS G I+S K+ +G GFVQF
Sbjct: 125 DSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTE 184
Query: 109 KDAEVALQKLQGTAIGKQTV 128
A+ A++KL G + + +
Sbjct: 185 DSAKNAIEKLNGKVLNDKQI 204
>UNIPROTKB|P52299 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
"mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=IDA] [GO:0006446 "regulation of
translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
SMR:P52299 GeneID:100380998 KEGG:xla:100380998
Xenbase:XB-GENE-1005792 Uniprot:P52299
Length = 153
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 54 NGSDGKS---NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQ 104
N SD +S + T++VG L +++ + ELFS G++ + + + K CGF V+
Sbjct: 25 NRSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVE 84
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
+ R DAE A++ + GT + + VR W G G + RG
Sbjct: 85 YYTRADAEQAMRFINGTRLDDRIVRTDWDAGFKEGRQYGRG 125
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 126 (49.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 37/143 (25%), Positives = 66/143 (46%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
AK+ D GH+ GYGFV + + RA+ +NG S +A +
Sbjct: 49 AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANL 108
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
++ L +++ KD+ ++FS FG I++ ++ V +G F++F R +AE A+
Sbjct: 109 YISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFN 168
Query: 120 GTAI--GKQTVRLSWGHNPG-NK 139
G + + + + NP NK
Sbjct: 169 GHKPPGSSEPITVKFAANPNQNK 191
Score = 111 (44.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G++N + V L N++ +LR LFS GE+ S K+ K G GFV + KDA
Sbjct: 18 GRTN---LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 112 EVALQKLQGTAIGKQTVRLSW 132
E A+ L G + +T+++S+
Sbjct: 75 ERAINTLNGLRLQSKTIKVSY 95
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 119 (46.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 35/111 (31%), Positives = 56/111 (50%)
Query: 52 EMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVG--KGCGFVQF 105
+ + SD N +FVG L+ NV D+ LR F F LS + G +G GFV F
Sbjct: 154 QQSSSDDTFN---LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF 210
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLSWG-----HNPGNKQWRGDHINHWNG 151
++ DA+ A+ +QG + + +R++W +N N Q R ++ N+ G
Sbjct: 211 TSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRRNYGNNNRG 261
Score = 112 (44.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/98 (26%), Positives = 51/98 (52%)
Query: 42 DENERSRAMIEMNGSDG--KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG 99
++ E +++ N G ++++ ++VG LD +++ L++ F G I ++KI + K
Sbjct: 52 NQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN 111
Query: 100 -----CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
FV++ DA +ALQ L G I V+++W
Sbjct: 112 NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW 149
Score = 98 (39.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T ++G + ++ DL LF +FG IL K KGC F+++ + A V + L
Sbjct: 342 TAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPF 401
Query: 124 GKQTVRLSWGHNPGN 138
+ +R WG N
Sbjct: 402 QGRNLRTGWGKERSN 416
Score = 77 (32.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57
D TG ++GYGFV F +++ AM M G D
Sbjct: 196 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 227
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T++ G + S +++ +R+ FS FG+I+ +++ KG F++F++ + A A+ + GT
Sbjct: 222 NCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVSVNGT 281
Query: 122 AIGKQTVRLSWG 133
I V+ WG
Sbjct: 282 TIEGHVVKCYWG 293
Score = 121 (47.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 113
SN+ +FVG L ++ D+R F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 112 SNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAEN 171
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+ + G +G + +R +W
Sbjct: 172 AIVHMGGQWLGGRQIRTNW 190
>UNIPROTKB|F8VR27 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01023064 ProteinModelPortal:F8VR27 SMR:F8VR27
Ensembl:ENST00000547605 UCSC:uc002cyr.1 ArrayExpress:F8VR27
Bgee:F8VR27 Uniprot:F8VR27
Length = 262
Score = 123 (48.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 109 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 168
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHW 149
+ A +KL GT + G++ V + NK+ + N W
Sbjct: 169 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 208
>UNIPROTKB|F8VZY7 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01022282 ProteinModelPortal:F8VZY7 SMR:F8VZY7
Ensembl:ENST00000551752 ArrayExpress:F8VZY7 Bgee:F8VZY7
Uniprot:F8VZY7
Length = 263
Score = 123 (48.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 110 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 169
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHW 149
+ A +KL GT + G++ V + NK+ + N W
Sbjct: 170 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 209
>TAIR|locus:2183775 [details] [associations]
symbol:AT5G10800 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396
"RNA processing" evidence=IEA] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
KO:K12842 UniGene:At.6008 IPI:IPI01019487 RefSeq:NP_196641.2
UniGene:At.32334 ProteinModelPortal:F4KIA8 SMR:F4KIA8 PRIDE:F4KIA8
EnsemblPlants:AT5G10800.1 GeneID:830947 KEGG:ath:AT5G10800
OMA:WAREDDE Uniprot:F4KIA8
Length = 947
Score = 131 (51.2 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 37/117 (31%), Positives = 56/117 (47%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSH 85
D N+ +T F D + S + ++ D ++ N ++V L S V + L F
Sbjct: 152 DHNSDNTSSSRFDELPDYFDPSGRLGSLDDGDPQTTN--LYVVNLSSKVDENFLLRTFGR 209
Query: 86 FGEILSVKI--PVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FG I SVKI P + CGFV F NR D E A +K+QG + + +++ WG
Sbjct: 210 FGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADGEAAKEKMQGIIVYEYELKIGWG 266
>UNIPROTKB|I3L1D4 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
Ensembl:ENST00000570626 Bgee:I3L1D4 Uniprot:I3L1D4
Length = 189
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 112 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 171
Query: 112 EVALQKLQGTAI 123
+ A +KL GT +
Sbjct: 172 DRAREKLHGTVV 183
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 102 (41.0 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVA 114
KS +F+ L + +K L +FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 86 KSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERA 145
Query: 115 LQKLQG 120
+ L G
Sbjct: 146 IDALNG 151
Score = 55 (24.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
++T S+L E FS A ++ D T + GY +V + + RA+ MN
Sbjct: 12 EVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETMN 64
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 118 (46.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 35/96 (36%), Positives = 50/96 (52%)
Query: 37 FV-RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI- 94
FV RF ER + G+ K +++ V D+ L+ELFS FG+ LSVK+
Sbjct: 82 FVGRFKSRKEREAEL----GAKAKEFT-NVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 136
Query: 95 --PVGK--GCGFVQFANRKDAEVALQKLQGTAI-GK 125
P GK G GFV + +DA A++++ G I GK
Sbjct: 137 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 172
>FB|FBgn0025790 [details] [associations]
symbol:TBPH "TAR DNA-binding protein-43 homolog" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] [GO:0008344 "adult locomotory
behavior" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0045886 "negative regulation of
synaptic growth at neuromuscular junction" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0007528 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0008344 GO:GO:0045886 EMBL:AB010261
HSSP:Q61474 eggNOG:NOG145464 EMBL:AB019705 EMBL:AB019706 SMR:O97468
IntAct:O97468 STRING:O97468 UCSC:CG10327-RC FlyBase:FBgn0025790
InParanoid:O97468 OrthoDB:EOG4QNKC2 Uniprot:O97468
Length = 531
Score = 127 (49.8 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 46/147 (31%), Positives = 70/147 (47%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGK------SNN--------ATIF 66
A++ D+ +G +KG+GFVRFG + + R + + DG+ N+ +F
Sbjct: 136 AQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPCKVF 195
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGT--AI 123
VG +++ DLRE FS FGE+ V IP + FV F D +VA Q L G I
Sbjct: 196 VGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFL---DPDVA-QSLCGEDHII 251
Query: 124 GKQTVRLSWGHNPGNKQWRGDHINHWN 150
+V +S P +Q R + +N
Sbjct: 252 KGVSVHVS-NAAPKAEQNRNQQVQSYN 277
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 126 (49.4 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---P---VGKGCGFVQFANRKDAEV 113
S++ IFVG L + + LRE F+ FGEI + +I P KG FV F + +AE
Sbjct: 92 SSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAEN 151
Query: 114 ALQKLQGTAIGKQTVRLSW 132
A+Q + G IG +++R +W
Sbjct: 152 AIQAMNGQWIGSRSIRTNW 170
Score = 116 (45.9 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGKGCGFVQFANRKDAEVAL 115
+S T++VG LDS+VS+ L LFS G + S KI P F++++N + A AL
Sbjct: 3 ESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTAL 62
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+ ++ ++++W +PGN Q + D +H
Sbjct: 63 TAMNKRLFLEKEIKVNWATSPGN-QPKTDISSH 94
Score = 99 (39.9 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 62 NATIFVGALDSNVSDKDL-RELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
N T++ G NV DL + F FG I V++ KG F++F ++ A A++
Sbjct: 220 NTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHN 279
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDH-INHWNGA 152
+ + V+ WG G GD+ N+ N A
Sbjct: 280 SEVHGNLVKCFWGKENG-----GDNSANNLNAA 307
Score = 65 (27.9 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+I L+E F S ++ D +T +KGY FV F + E A+ MNG
Sbjct: 105 EIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNG 158
>UNIPROTKB|E1BT73 [details] [associations]
symbol:RALY "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000006718 EMBL:AADN02019478 EMBL:AADN02019479
EMBL:AADN02019480 IPI:IPI00577610 ProteinModelPortal:E1BT73
Ensembl:ENSGALT00000003194 Uniprot:E1BT73
Length = 179
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDK-DLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAE 112
N +D KS N+ +F+G L++ V K D+ +FS +G ++ V KG FVQ++N + A
Sbjct: 12 NKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVVGCS--VHKGYAFVQYSNERHAR 69
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
A+ G + QT+ ++ P + +G
Sbjct: 70 AAVLGENGRVLAGQTLDINMAGEPKPNRPKG 100
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 42/137 (30%), Positives = 65/137 (47%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRA-----MIEMNGSDGKSNNAT-----------IFVGA 69
D TG +GYGFV F E + A MI++ G + N A+ IF+G
Sbjct: 4 DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGN 63
Query: 70 LDSNVSDKDLRELFSHFGEILSV-KI---P-VG--KGCGFVQFANRKDAEVALQKLQGTA 122
LD + +K L + FS FG IL KI P G KG F+ FA+ ++ A++ + G
Sbjct: 64 LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 123
Query: 123 IGKQTVRLSWGHNPGNK 139
+ + + +S+ +K
Sbjct: 124 LCNRPITVSYAFKKDSK 140
>UNIPROTKB|Q6DES0 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
Length = 153
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAEVA 114
++ T++VG L +++ + ELFS G++ + + + K CGF V++ R DAE A
Sbjct: 35 HSCTLYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQA 94
Query: 115 LQKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
++ + GT + + +R W G G + RG
Sbjct: 95 MRFINGTRLDDRIIRTDWDAGFKEGRQYGRG 125
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 129 (50.5 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQKL 118
IFVG L S + + LRE F+ FGEI ++ P KG GFV F + +AE A+ +
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 119 QGTAIGKQTVRLSWGHN--PGNKQ 140
G +G +++R +W P +K+
Sbjct: 523 NGQWLGSRSIRTNWATRKPPASKE 546
Score = 119 (46.9 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNV---SDKDLRELFSHFGEILSVKIPVGKG 99
EN + E+ SN T++VG ++S + S++ L++ F+ +G I +++ KG
Sbjct: 546 ENIKPLTFDEVYNQSSPSN-CTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVFKDKG 604
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
FV+F+ ++ A A+ + T I Q V+ SWG G+
Sbjct: 605 YAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKESGD 643
>MGI|MGI:106368 [details] [associations]
symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C.
elegans) 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043025 "neuronal cell
body" evidence=IDA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0097458 "neuron part" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106368 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622 EMBL:CH466558
GO:GO:0043484 EMBL:AL591075 GO:GO:0000381 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 CTD:146713
EMBL:FJ958310 EMBL:FJ958311 EMBL:AK079086 EMBL:AK160816
EMBL:AL591514 EMBL:AL591544 EMBL:BC054403 IPI:IPI00222115
IPI:IPI00408241 IPI:IPI00648836 IPI:IPI00720112 IPI:IPI00894965
RefSeq:NP_001020102.2 RefSeq:NP_001034256.1 RefSeq:NP_001034257.1
UniGene:Mm.341103 ProteinModelPortal:Q8BIF2 SMR:Q8BIF2
IntAct:Q8BIF2 STRING:Q8BIF2 PaxDb:Q8BIF2 PRIDE:Q8BIF2
Ensembl:ENSMUST00000017576 Ensembl:ENSMUST00000069343
Ensembl:ENSMUST00000103023 Ensembl:ENSMUST00000106278
Ensembl:ENSMUST00000117731 Ensembl:ENSMUST00000120061 GeneID:52897
KEGG:mmu:52897 UCSC:uc007mpo.1 InParanoid:Q8BIF2 OMA:LQASLCR
NextBio:309687 Bgee:Q8BIF2 Genevestigator:Q8BIF2 Uniprot:Q8BIF2
Length = 374
Score = 124 (48.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 37/108 (34%), Positives = 50/108 (46%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVA 114
K + V + D DLR++F FG+IL V+I KG GFV F DA+ A
Sbjct: 95 KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRA 154
Query: 115 LQKLQGTAI-GKQ------TVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
+KL GT + G++ T R+ PGN G +N G YG
Sbjct: 155 REKLNGTIVEGRKIEVNNATARVMTNKKPGNPYANGWKLNPVVGTVYG 202
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 124 (48.7 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 36/129 (27%), Positives = 62/129 (48%)
Query: 34 GYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIFVGALDSNVSDKD 78
GYGFV + D + +A+ +NG S +A ++V L ++ K+
Sbjct: 121 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKE 180
Query: 79 LRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQT--VRL 130
L +LFS +G I++ +I V +G GF++F R +AE A++ L G T + +
Sbjct: 181 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 240
Query: 131 SWGHNPGNK 139
+ +NP K
Sbjct: 241 KFANNPSQK 249
>UNIPROTKB|I3LIU9 [details] [associations]
symbol:LOC100621482 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
Ensembl:ENSSSCT00000027593 OMA:GYGKMCK Uniprot:I3LIU9
Length = 148
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG L +++ + ELFS G+I KI + G FV++ +R DAE A++ + GT
Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIK--KIIMACGFCFVEYYSRADAENAMRYINGT 96
Query: 122 AIGKQTVRLSW--GHNPGNKQWRG 143
+ + +R W G G + RG
Sbjct: 97 RLDDRIIRTDWDAGFKEGRQYGRG 120
>FB|FBgn0037220 [details] [associations]
symbol:CG14641 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:NOG277760
KO:K12872 GO:GO:0000381 HSSP:P33240 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AY061516 RefSeq:NP_649440.3 UniGene:Dm.3575
SMR:Q95RB1 IntAct:Q95RB1 MINT:MINT-289131 STRING:Q95RB1
EnsemblMetazoa:FBtr0078985 GeneID:40529 KEGG:dme:Dmel_CG14641
UCSC:CG14641-RA FlyBase:FBgn0037220 InParanoid:Q95RB1
OrthoDB:EOG4N5TC7 GenomeRNAi:40529 NextBio:819204 Uniprot:Q95RB1
Length = 418
Score = 124 (48.7 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQK-LQ 119
N T++VG L +++ +LR+ F FGEI S+ + + C FVQ+ R AE+A ++
Sbjct: 230 NITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERTFN 289
Query: 120 GTAIGKQTVRLSWGHN 135
I + V + W H+
Sbjct: 290 KLVIQGRKVSIKWAHS 305
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 112 (44.5 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 33/123 (26%), Positives = 60/123 (48%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNGS--DGKSNNAT-------IFVGA 69
+ +D NTG ++G+GF+ F D + + + ++G D K A IFVG
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 160
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123
L+ +++ +RE F FGEI ++++P+ +G F+ F + + L+K T
Sbjct: 161 LNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVS 220
Query: 124 GKQ 126
G +
Sbjct: 221 GSK 223
Score = 35 (17.4 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 135 NPGNKQWRGDHINHW 149
N G Q RG H N++
Sbjct: 263 NYGKSQRRGGHQNNY 277
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 112 (44.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 33/123 (26%), Positives = 60/123 (48%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNGS--DGKSNNAT-------IFVGA 69
+ +D NTG ++G+GF+ F D + + + ++G D K A IFVG
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 160
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123
L+ +++ +RE F FGEI ++++P+ +G F+ F + + L+K T
Sbjct: 161 LNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVS 220
Query: 124 GKQ 126
G +
Sbjct: 221 GSK 223
Score = 35 (17.4 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 135 NPGNKQWRGDHINHW 149
N G Q RG H N++
Sbjct: 266 NYGKSQRRGGHQNNY 280
>UNIPROTKB|F1Q2X1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 InterPro:IPR025670
Pfam:PF12414 EMBL:AAEX03004562 EMBL:AAEX03004563 EMBL:AAEX03004564
GeneID:609116 KEGG:cfa:609116 RefSeq:XP_863775.1
Ensembl:ENSCAFT00000030298 Uniprot:F1Q2X1
Length = 395
Score = 123 (48.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 130 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 189
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHW 149
+ A +KL GT + G++ V + NK+ + N W
Sbjct: 190 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 229
>MGI|MGI:1926224 [details] [associations]
symbol:Rbfox1 "RNA binding protein, fox-1 homolog (C.
elegans) 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005802 "trans-Golgi network" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0050885
"neuromuscular process controlling balance" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1926224 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005802 GO:GO:0043484 Reactome:REACT_24972 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ OrthoDB:EOG4NVZKS
ChiTaRS:RBFOX1 EMBL:AF107204 EMBL:AY659954 EMBL:AY659955
EMBL:AY659956 EMBL:AY659957 EMBL:AY659958 EMBL:AF191501
EMBL:AB041596 EMBL:AK134833 EMBL:BC059002 IPI:IPI00121045
IPI:IPI00605392 IPI:IPI00606138 IPI:IPI00607041 IPI:IPI00885248
IPI:IPI00886040 IPI:IPI00886174 RefSeq:NP_067452.2
RefSeq:NP_899011.2 UniGene:Mm.370334 ProteinModelPortal:Q9JJ43
SMR:Q9JJ43 STRING:Q9JJ43 PhosphoSite:Q9JJ43 PaxDb:Q9JJ43
PRIDE:Q9JJ43 Ensembl:ENSMUST00000056416 Ensembl:ENSMUST00000115841
GeneID:268859 KEGG:mmu:268859 UCSC:uc007ycb.2 UCSC:uc007ycc.2
UCSC:uc007ycf.2 UCSC:uc007ycg.2 UCSC:uc007ych.2 UCSC:uc007yci.2
NextBio:392539 Bgee:Q9JJ43 CleanEx:MM_A2BP1 Genevestigator:Q9JJ43
GermOnline:ENSMUSG00000008658 Uniprot:Q9JJ43
Length = 396
Score = 123 (48.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 109 TESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 168
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHW 149
+ A +KL GT + G++ V + NK+ + N W
Sbjct: 169 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 208
>UNIPROTKB|Q9NWB1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005802
"trans-Golgi network" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0050658 "RNA transport" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005802 GO:GO:0043484
GO:GO:0050658 eggNOG:NOG258617 KO:K14946 CTD:54715
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ
EMBL:AF107203 EMBL:AF229057 EMBL:AF094849 EMBL:AF109106
EMBL:AF109120 EMBL:AF109107 EMBL:AF109108 EMBL:AF109109
EMBL:AF109110 EMBL:AF109111 EMBL:AF109112 EMBL:AF109113
EMBL:AF109114 EMBL:AF109115 EMBL:AF109116 EMBL:AF109117
EMBL:AF109118 EMBL:AF109119 EMBL:AF448859 EMBL:AK001027
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 EMBL:BC113691 IPI:IPI00152050
IPI:IPI00170678 IPI:IPI00170712 IPI:IPI01021020 IPI:IPI01022902
RefSeq:NP_001135805.1 RefSeq:NP_001135806.1 RefSeq:NP_061193.2
RefSeq:NP_665898.1 RefSeq:NP_665899.1 RefSeq:NP_665900.1
UniGene:Hs.459842 PDB:2ERR PDBsum:2ERR ProteinModelPortal:Q9NWB1
SMR:Q9NWB1 IntAct:Q9NWB1 MINT:MINT-2854938 STRING:Q9NWB1
PhosphoSite:Q9NWB1 DMDM:166897979 PaxDb:Q9NWB1 PRIDE:Q9NWB1
Ensembl:ENST00000311745 Ensembl:ENST00000355637
Ensembl:ENST00000436368 Ensembl:ENST00000547338
Ensembl:ENST00000550418 Ensembl:ENST00000553186 GeneID:54715
KEGG:hsa:54715 UCSC:uc002cys.2 UCSC:uc002cyt.2 UCSC:uc002cyw.2
UCSC:uc002cyx.2 UCSC:uc002cyy.2 GeneCards:GC16P006033
HGNC:HGNC:18222 HPA:HPA040809 MIM:605104 neXtProt:NX_Q9NWB1
ChiTaRS:RBFOX1 EvolutionaryTrace:Q9NWB1 GenomeRNAi:54715
NextBio:57277 ArrayExpress:Q9NWB1 Bgee:Q9NWB1 Genevestigator:Q9NWB1
GermOnline:ENSG00000078328 Uniprot:Q9NWB1
Length = 397
Score = 123 (48.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 110 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 169
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHW 149
+ A +KL GT + G++ V + NK+ + N W
Sbjct: 170 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 209
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 96 (38.9 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 10 TNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGK 59
TN L E FS+ A V +D T +KGYGFV F D + A+ E+NGS +GK
Sbjct: 49 TNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGK 106
Score = 80 (33.2 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 77 KDLRELFSHFGEILSVKIPV-GK---GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+DL F FG++ V +P G G GFV +K+AE AL+ + G + +T+ + W
Sbjct: 165 EDLAAHFRSFGKVKYVTLPKKGSQLAGFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDW 224
>UNIPROTKB|F1NBH4 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005802 "trans-Golgi network"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005802 GO:GO:0043484 GeneTree:ENSGT00390000013767
InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ EMBL:AADN02023354
EMBL:AADN02023355 EMBL:AADN02023356 EMBL:AADN02023357
EMBL:AADN02023358 EMBL:AADN02023359 EMBL:AADN02023360
EMBL:AADN02023361 EMBL:AADN02023362 EMBL:AADN02023363
EMBL:AADN02023364 EMBL:AADN02023365 EMBL:AADN02023366
EMBL:AADN02023367 EMBL:AADN02023368 EMBL:AADN02023369
EMBL:AADN02023370 EMBL:AADN02023371 EMBL:AADN02023372
EMBL:AADN02023373 EMBL:AADN02023374 EMBL:AADN02023375
EMBL:AADN02023376 EMBL:AADN02023377 EMBL:AADN02023378
EMBL:AADN02023379 EMBL:AADN02023380 EMBL:AADN02023381
EMBL:AADN02023382 EMBL:AADN02023383 IPI:IPI00600787
Ensembl:ENSGALT00000011913 Uniprot:F1NBH4
Length = 399
Score = 123 (48.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 112 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 171
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHW 149
+ A +KL GT + G++ V + NK+ + N W
Sbjct: 172 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 211
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAEVAL 115
++T++VG L +++ ++ELFS G++ + + + K CGF V++ R DAE A+
Sbjct: 42 SSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAM 101
Query: 116 QKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
+ + GT + + VR W G G + RG
Sbjct: 102 RFINGTRLDDRIVRTDWDAGFKEGRQYGRG 131
>UNIPROTKB|Q3ZBJ1 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
GeneID:510872 KEGG:bta:510872 CTD:22916
GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
Length = 156
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAEVAL 115
+ T++VG L +++ + ELFS G+I + + + K CGF V++ +R DAE A+
Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
Query: 116 QKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
+ + GT + + +R W G G + RG
Sbjct: 99 RYINGTRLDDRIIRTDWDAGFKEGRQYGRG 128
>UNIPROTKB|E2RFC9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
Length = 156
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAEVAL 115
+ T++VG L +++ + ELFS G+I + + + K CGF V++ +R DAE A+
Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
Query: 116 QKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
+ + GT + + +R W G G + RG
Sbjct: 99 RYINGTRLDDRIIRTDWDAGFKEGRQYGRG 128
>UNIPROTKB|P52298 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
"mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0006446 "regulation of translational
initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0050434 "positive regulation of viral transcription"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
Uniprot:P52298
Length = 156
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAEVAL 115
+ T++VG L +++ + ELFS G+I + + + K CGF V++ +R DAE A+
Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
Query: 116 QKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
+ + GT + + +R W G G + RG
Sbjct: 99 RYINGTRLDDRIIRTDWDAGFKEGRQYGRG 128
>UNIPROTKB|F2Z5Q9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
Uniprot:F2Z5Q9
Length = 156
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAEVAL 115
+ T++VG L +++ + ELFS G+I + + + K CGF V++ +R DAE A+
Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
Query: 116 QKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
+ + GT + + +R W G G + RG
Sbjct: 99 RYINGTRLDDRIIRTDWDAGFKEGRQYGRG 128
>MGI|MGI:1915342 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005845
"mRNA cap binding complex" evidence=ISO] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1915342
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 EMBL:CH466521 GO:GO:0031047
GO:GO:0005845 GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724
GO:GO:0006370 GO:GO:0045292 HOGENOM:HOG000217589 HOVERGEN:HBG052581
OrthoDB:EOG470TJG PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA GO:GO:0046833
GO:GO:0006408 EMBL:AK008980 EMBL:AK012659 EMBL:AK077841
EMBL:AK147027 EMBL:BC118926 IPI:IPI00132019 RefSeq:NP_080830.1
UniGene:Mm.290027 ProteinModelPortal:Q9CQ49 SMR:Q9CQ49
STRING:Q9CQ49 PhosphoSite:Q9CQ49 PaxDb:Q9CQ49 PRIDE:Q9CQ49
Ensembl:ENSMUST00000023460 GeneID:68092 KEGG:mmu:68092
UCSC:uc007yxz.2 InParanoid:Q0VF93 NextBio:326400 Bgee:Q9CQ49
CleanEx:MM_NCBP2 Genevestigator:Q9CQ49
GermOnline:ENSMUSG00000022774 Uniprot:Q9CQ49
Length = 156
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAEVAL 115
+ T++VG L +++ + ELFS G+I + + + K CGF V++ +R DAE A+
Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
Query: 116 QKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
+ + GT + + +R W G G + RG
Sbjct: 99 RYINGTRLDDRIIRTDWDAGFKEGRQYGRG 128
>RGD|1596188 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA;ISO] [GO:0000340
"RNA 7-methylguanosine cap binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005845 "mRNA cap
binding complex" evidence=ISO] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA;ISO] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO;ISS] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=ISS] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1596188 GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:BC161994
IPI:IPI00192753 RefSeq:NP_001102995.1 RefSeq:XP_003751123.1
UniGene:Rn.204538 ProteinModelPortal:B1WC40 SMR:B1WC40
STRING:B1WC40 PhosphoSite:B1WC40 PRIDE:B1WC40
Ensembl:ENSRNOT00000002381 GeneID:100911481 GeneID:689116
KEGG:rno:100911481 KEGG:rno:689116 UCSC:RGD:1596188 CTD:80235
NextBio:737969 Genevestigator:B1WC40 Uniprot:B1WC40
Length = 156
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAEVAL 115
+ T++VG L +++ + ELFS G+I + + + K CGF V++ +R DAE A+
Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
Query: 116 QKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
+ + GT + + +R W G G + RG
Sbjct: 99 RYINGTRLDDRIIRTDWDAGFKEGRQYGRG 128
>ZFIN|ZDB-GENE-020419-31 [details] [associations]
symbol:ncbp2 "nuclear cap binding protein subunit 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA;ISS]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0046833 "positive regulation of RNA export from nucleus"
evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=ISS] [GO:0006408 "snRNA export from nucleus" evidence=ISS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-020419-31
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:AY099530 EMBL:AL953867
EMBL:BC083529 IPI:IPI00487113 RefSeq:NP_775356.1 UniGene:Dr.83993
ProteinModelPortal:Q8JGR6 SMR:Q8JGR6 STRING:Q8JGR6
Ensembl:ENSDART00000008365 GeneID:192325 KEGG:dre:192325
InParanoid:Q8JGR6 NextBio:20797161 Bgee:Q8JGR6 Uniprot:Q8JGR6
Length = 155
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAEVAL 115
+AT++VG L +++ + ELF+ G++ + I + K CGF V++ R DAE A+
Sbjct: 38 SATLYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKIKKTACGFCFVEYYTRADAENAM 97
Query: 116 QKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
+ + GT + + +R W G G + RG
Sbjct: 98 RFVNGTRLDDRIIRTDWDAGFKEGRQYGRG 127
>UNIPROTKB|J3KNW3 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC005774 EMBL:AC006075 EMBL:AC006112
EMBL:AC007012 EMBL:AC007217 EMBL:AC007222 EMBL:AC007223
EMBL:AC009135 EMBL:AC022206 EMBL:AC023829 EMBL:AC027683
EMBL:AC079410 EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222
ChiTaRS:RBFOX1 ProteinModelPortal:J3KNW3 Ensembl:ENST00000340209
Uniprot:J3KNW3
Length = 402
Score = 123 (48.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 115 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 174
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHW 149
+ A +KL GT + G++ V + NK+ + N W
Sbjct: 175 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 214
>UNIPROTKB|A6NFN3 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381 eggNOG:NOG258617
KO:K14946 HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414
CTD:146713 EMBL:AK293617 EMBL:AC021534 EMBL:AC073624
IPI:IPI00908333 RefSeq:NP_001076044.1 UniGene:Hs.135229
ProteinModelPortal:A6NFN3 SMR:A6NFN3 STRING:A6NFN3 PaxDb:A6NFN3
PRIDE:A6NFN3 Ensembl:ENST00000415831 Ensembl:ENST00000453134
Ensembl:ENST00000580155 GeneID:146713 KEGG:hsa:146713
UCSC:uc010dhs.3 GeneCards:GC17M077086 HGNC:HGNC:27097 HPA:HPA030790
neXtProt:NX_A6NFN3 HOGENOM:HOG000230971 GenomeRNAi:146713
NextBio:85428 ArrayExpress:A6NFN3 Bgee:A6NFN3 Genevestigator:A6NFN3
Uniprot:A6NFN3
Length = 312
Score = 121 (47.7 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 37/108 (34%), Positives = 50/108 (46%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVA 114
K + V + D DLR++F FG+IL V+I KG GFV F DA+ A
Sbjct: 95 KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRA 154
Query: 115 LQKLQGTAI-GKQ------TVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
+KL GT + G++ T R+ GN G +N GA YG
Sbjct: 155 REKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYG 202
>UNIPROTKB|F1Q2W1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 InterPro:IPR025670
Pfam:PF12414 OMA:PPDTMAQ EMBL:AAEX03004562 EMBL:AAEX03004563
EMBL:AAEX03004564 RefSeq:XP_851461.1 ProteinModelPortal:F1Q2W1
Ensembl:ENSCAFT00000030301 GeneID:609116 KEGG:cfa:609116
Uniprot:F1Q2W1
Length = 418
Score = 123 (48.4 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 130 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 189
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHW 149
+ A +KL GT + G++ V + NK+ + N W
Sbjct: 190 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 229
>RGD|1311210 [details] [associations]
symbol:Rbfox1 "RNA binding protein, fox-1 homolog (C. elegans)
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005802 "trans-Golgi network" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0050885 "neuromuscular process controlling
balance" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 RGD:1311210 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS IPI:IPI00949707
ProteinModelPortal:D4A2J5 Ensembl:ENSRNOT00000065101
UCSC:RGD:1311210 ArrayExpress:D4A2J5 Uniprot:D4A2J5
Length = 367
Score = 122 (48.0 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 102 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 161
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHW 149
+ A +KL GT + G++ V + NK+ + N W
Sbjct: 162 DRAREKLHGTVVEGRKIEVNNATARVMTNKKAVNPYTNGW 201
>UNIPROTKB|B7Z1U7 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AC005774 EMBL:AC006075
EMBL:AC006112 EMBL:AC007012 EMBL:AC007217 EMBL:AC007222
EMBL:AC007223 EMBL:AC009135 EMBL:AC022206 EMBL:AC023829
EMBL:AC027683 EMBL:AC079410 EMBL:AC125796 EMBL:AC131390
UniGene:Hs.459842 HGNC:HGNC:18222 ChiTaRS:RBFOX1 EMBL:AK293951
IPI:IPI00910807 SMR:B7Z1U7 STRING:B7Z1U7 Ensembl:ENST00000422070
UCSC:uc010uxz.1 Uniprot:B7Z1U7
Length = 425
Score = 123 (48.4 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 153 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 212
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHW 149
+ A +KL GT + G++ V + NK+ + N W
Sbjct: 213 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 252
>UNIPROTKB|B4DF29 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AC021534 EMBL:AC073624
IPI:IPI00908333 UniGene:Hs.135229 HGNC:HGNC:27097
HOGENOM:HOG000230971 EMBL:AC020689 EMBL:AC027824 EMBL:AC055858
EMBL:AC142247 EMBL:AK293905 ProteinModelPortal:B4DF29 STRING:B4DF29
Ensembl:ENST00000584778 UCSC:uc010wua.2 ArrayExpress:B4DF29
Bgee:B4DF29 Uniprot:B4DF29
Length = 325
Score = 121 (47.7 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 37/108 (34%), Positives = 50/108 (46%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVA 114
K + V + D DLR++F FG+IL V+I KG GFV F DA+ A
Sbjct: 95 KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRA 154
Query: 115 LQKLQGTAI-GKQ------TVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
+KL GT + G++ T R+ GN G +N GA YG
Sbjct: 155 REKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYG 202
>ZFIN|ZDB-GENE-030131-9530 [details] [associations]
symbol:pspc1 "paraspeckle component 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9530 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0016363 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004
HOGENOM:HOG000231095 HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM
OrthoDB:EOG444KKN EMBL:BC116549 IPI:IPI00650514
RefSeq:NP_001038723.1 UniGene:Dr.75397 ProteinModelPortal:Q1JPY8
SMR:Q1JPY8 STRING:Q1JPY8 Ensembl:ENSDART00000102335 GeneID:692285
KEGG:dre:692285 InParanoid:Q1JPY8 NextBio:20902486
ArrayExpress:Q1JPY8 Bgee:Q1JPY8 Uniprot:Q1JPY8
Length = 512
Score = 124 (48.7 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIG 124
+FVG L S+++D+D ++LF +G+ V I +G GF++ R AE+A +L GT +G
Sbjct: 78 LFVGNLPSDMADEDFKKLFFKYGDAKEVFINRDRGFGFIRLETRTLAEIAKAELDGTVLG 137
Query: 125 KQTVRL 130
+ +R+
Sbjct: 138 NRPIRI 143
>UNIPROTKB|J9NU79 [details] [associations]
symbol:HNRNPC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR017347
PIRSF:PIRSF037992 GeneTree:ENSGT00390000006718 EMBL:AAEX03005470
RefSeq:XP_856741.2 Ensembl:ENSCAFT00000029199 GeneID:480188
KEGG:cfa:480188 OMA:RVFINLN Uniprot:J9NU79
Length = 294
Score = 120 (47.3 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDK-DLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAE 112
N +D +S N+ +F+G L++ V K D+ +FS +G+I+ +P KG FVQ+ N ++A
Sbjct: 7 NKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVP--KGFAFVQYVNERNAR 64
Query: 113 VALQKLQGTAIGKQTVRLSWGHNP 136
A+ G I Q + ++ P
Sbjct: 65 AAVAGEDGRMIAGQVLDINLAAEP 88
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 98 (39.6 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 120
++V LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++A A+ ++ G
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 121 TAIGKQTVRLSWGHNPGNKQ 140
+ + + ++ +Q
Sbjct: 356 RIVATKPLYVALAQRKEERQ 375
Score = 75 (31.5 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 26/70 (37%), Positives = 31/70 (44%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +T S V D N G +KGYGFV F RA+ +MNG N
Sbjct: 110 INNKALYDTVSAFGNILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGM--LLNG 165
Query: 63 ATIFVGALDS 72
+FVG S
Sbjct: 166 RKVFVGQFKS 175
>ZFIN|ZDB-GENE-041010-127 [details] [associations]
symbol:raly "RNA binding protein, autoantigenic
(hnRNP-associated with lethal yellow homolog (mouse))" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-041010-127 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002302 InterPro:IPR017347
PIRSF:PIRSF037992 CTD:22913 KO:K12895 EMBL:AY398405 IPI:IPI00491006
RefSeq:NP_991173.1 UniGene:Dr.133570 ProteinModelPortal:Q6TGV1
SMR:Q6TGV1 GeneID:402903 KEGG:dre:402903 InParanoid:Q6TGV1
NextBio:20816720 ArrayExpress:Q6TGV1 Uniprot:Q6TGV1
Length = 273
Score = 119 (46.9 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDK-DLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAE 112
N +D KS N+ +F+G L++ V K D+ +FS +G +L V KG FVQ+AN + A
Sbjct: 12 NKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVLGCS--VHKGYAFVQYANERHAR 69
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
A+ G + QT+ ++ P + +G
Sbjct: 70 GAVIGENGRVLAGQTLDINMAGEPKPNRPKG 100
>UNIPROTKB|F8VZG9 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC005774 EMBL:AC006075 EMBL:AC006112
EMBL:AC007012 EMBL:AC007217 EMBL:AC007222 EMBL:AC007223
EMBL:AC009135 EMBL:AC022206 EMBL:AC023829 EMBL:AC027683
EMBL:AC079410 EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222
ChiTaRS:RBFOX1 IPI:IPI01022127 ProteinModelPortal:F8VZG9 SMR:F8VZG9
Ensembl:ENST00000547372 ArrayExpress:F8VZG9 Bgee:F8VZG9
Uniprot:F8VZG9
Length = 466
Score = 123 (48.4 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDA 111
++ KS + V + D DLR++F FG+IL V+I KG GFV F N DA
Sbjct: 153 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 212
Query: 112 EVALQKLQGTAI-GKQT-VRLSWGHNPGNKQWRGDHINHW 149
+ A +KL GT + G++ V + NK+ + N W
Sbjct: 213 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 252
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAEVAL 115
++T++VG L +++ ++ELFS G++ + + + K CGF V++ R DAE A+
Sbjct: 42 SSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAM 101
Query: 116 QKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
+ + GT + + +R W G G + RG
Sbjct: 102 RFINGTRLDDRIIRTDWDAGFKEGRQYGRG 131
>UNIPROTKB|C1BY64 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8010 "Esox lucius" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT079543 ProteinModelPortal:C1BY64
Uniprot:C1BY64
Length = 155
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 30/93 (32%), Positives = 50/93 (53%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAE 112
K +N T++VG L +++ + ELFS G++ + I + K CGF V++ R DAE
Sbjct: 36 KQSN-TLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRADAE 94
Query: 113 VALQKLQGTAIGKQTVRLSW--GHNPGNKQWRG 143
A++ + GT + + +R W G G + RG
Sbjct: 95 NAMRFVNGTRLDDRIIRTDWDAGFKEGRQYGRG 127
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 124 (48.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 33/109 (30%), Positives = 58/109 (53%)
Query: 43 ENERSRAMIEMNGSDGKSNNAT---IFVGALDSNVSDKDLRELFSHFGEILSVKIP---V 96
E E++R S G ++A ++VG + ++ + DL+ +F FGE+ V++
Sbjct: 250 EAEKNRQARNSEASSGNKHSAPFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDET 309
Query: 97 GK--GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN---PGNKQ 140
G+ G GFVQF + A AL+K+ G +G + +R+ G++ P N Q
Sbjct: 310 GRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGNDKFTPENTQ 358
>TAIR|locus:2153659 [details] [associations]
symbol:EIF3G2 "eukaryotic translation initiation factor
3G2" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00343 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003743 GO:GO:0005852 EMBL:AB017060 KO:K03248
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 HSSP:P11940 IPI:IPI00528477 RefSeq:NP_196219.3
UniGene:At.20561 ProteinModelPortal:Q9FI86 SMR:Q9FI86 STRING:Q9FI86
PRIDE:Q9FI86 EnsemblPlants:AT5G06000.1 GeneID:830487
KEGG:ath:AT5G06000 TAIR:At5g06000 InParanoid:Q9FI86 OMA:KFNDEGK
PhylomeDB:Q9FI86 ProtClustDB:CLSN2925586 Genevestigator:Q9FI86
Uniprot:Q9FI86
Length = 308
Score = 120 (47.3 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 34/118 (28%), Positives = 56/118 (47%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA--TIFVGALDSNVSDKDLR 80
+T +++T G G + + R A + GSD +S + ++ V L + DL
Sbjct: 164 LTAETSTSTITGTGRAAYVPPSMREGADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLM 223
Query: 81 ELFSHFGEI------LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
ELF FG + + K + +G GFV F +R+DA+ A+ KL G +R+ W
Sbjct: 224 ELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEW 281
>UNIPROTKB|J3QRF4 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC021534 EMBL:AC073624 HGNC:HGNC:27097
OMA:LQASLCR EMBL:AC020689 EMBL:AC027824 EMBL:AC055858 EMBL:AC142247
ProteinModelPortal:J3QRF4 Ensembl:ENST00000583458 Uniprot:J3QRF4
Length = 358
Score = 121 (47.7 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 37/108 (34%), Positives = 50/108 (46%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVA 114
K + V + D DLR++F FG+IL V+I KG GFV F DA+ A
Sbjct: 94 KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRA 153
Query: 115 LQKLQGTAI-GKQ------TVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
+KL GT + G++ T R+ GN G +N GA YG
Sbjct: 154 REKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYG 201
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 118 (46.6 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG----CGF--VQFANRKDAEVAL 115
+ T+++G + +++ L ELFS GEI + + + K CGF V F +R+D E A+
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 116 QKLQGTAIGKQTVRLS--WGHNPGNKQW-RG 143
+ + GT + + +R+ WG G +QW RG
Sbjct: 93 KYISGTILDDRPIRVDFDWGFQEG-RQWGRG 122
>ZFIN|ZDB-GENE-030131-9003 [details] [associations]
symbol:scaf4a "SR-related CTD-associated factor
4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9003 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:AL837524 EMBL:AL935277
IPI:IPI00993297 Ensembl:ENSDART00000108981 Uniprot:E7F172
Length = 1104
Score = 127 (49.8 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL-QG 120
+ T++VG LD +D+ + FG+I S+ + +GC ++ +R+DA ALQKL +G
Sbjct: 522 STTLWVGQLDKRTQQQDVASILEEFGQIDSINMIPPRGCAYIVMIHRQDAYRALQKLSRG 581
Query: 121 T-AIGKQTVRLSWGHNPGNK 139
+ ++ ++++W N G K
Sbjct: 582 PYKVNQKAIKIAWALNKGIK 601
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 112 (44.5 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 33/123 (26%), Positives = 60/123 (48%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNGS--DGKSNNAT-------IFVGA 69
+ +D NTG ++G+GF+ F D + + + ++G D K A IFVG
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGG 160
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123
L+ +++ +RE F FGEI ++++P+ +G F+ F + + L+K T
Sbjct: 161 LNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVS 220
Query: 124 GKQ 126
G +
Sbjct: 221 GSK 223
Score = 35 (17.4 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 135 NPGNKQWRGDHINHW 149
N G Q RG H N++
Sbjct: 310 NYGKSQRRGGHQNNY 324
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 61 NNAT--IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAE 112
NNAT +FVG +D + +K L ++FS FG+I ++++P+ +G FV++ DA+
Sbjct: 4 NNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAK 63
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
AL + + + + +++ +K + DH
Sbjct: 64 HALYNMNNFELNGKRIHVNY-----SKTKKADH 91
>UNIPROTKB|E2RBE5 [details] [associations]
symbol:NCBP2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:GFREGQQ PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
EMBL:AAEX03026753 Ensembl:ENSCAFT00000028568 Uniprot:E2RBE5
Length = 163
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 32/119 (26%), Positives = 64/119 (53%)
Query: 39 RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK 98
+FG +N+ +++ +++T++VG L +++ + ELFS G++ +V + + K
Sbjct: 25 QFGGDNDEQEKLLK--------DSSTLYVGNLSFYTTEEQIYELFSRCGDVKNVFMGLDK 76
Query: 99 ----GCGF--VQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNG 151
CGF +++ NR DAE A+ L GT + T+ W + G ++ R + +H +G
Sbjct: 77 IKKTACGFCFIEYHNRFDAENAMLFLNGTCLDDHTICTDW--DLGFREGR-QYSHHRSG 132
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 61 NNAT--IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAE 112
NNAT +FVG +D + +K L ++FS FG+I ++++P+ +G FV++ DA+
Sbjct: 4 NNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAK 63
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
AL + + + + +++ +K + DH
Sbjct: 64 HALYNMNNFELNGKRIHVNY-----SKTKKADH 91
>WB|WBGene00009141 [details] [associations]
symbol:ncbp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0040022 "feminization of
hermaphroditic germ-line" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0005635
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0016246
GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
GO:GO:0040022 eggNOG:COG0724 GO:GO:0006370 HOGENOM:HOG000217589
PANTHER:PTHR18847 HSSP:P52298 GeneTree:ENSGT00390000003197
EMBL:Z78419 PIR:T21382 RefSeq:NP_001250552.1 RefSeq:NP_001250553.1
RefSeq:NP_001250554.1 ProteinModelPortal:Q93594 STRING:Q93594
PaxDb:Q93594 GeneID:184953 KEGG:cel:CELE_F26A3.2 UCSC:F26A3.2
CTD:184953 WormBase:F26A3.2a WormBase:F26A3.2b WormBase:F26A3.2c
InParanoid:Q93594 OMA:YRTDYDV NextBio:926534 Uniprot:Q93594
Length = 158
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGF--VQFANRKDAEVAL 115
+ T++VG L + + ELF G++ V + + + CGF V++ R+DAE+AL
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELAL 95
Query: 116 QKLQGTAIGKQTVRLSW--GHNPGNKQWRGDH 145
Q + T + + +R W G G + RG H
Sbjct: 96 QNISNTRMDDRVIRADWDAGFIEGRQYGRGKH 127
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 123 (48.4 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 39/113 (34%), Positives = 57/113 (50%)
Query: 35 YGFVRFGDENERSRAMIEMNGSDGKSNNATI-------------FVGALDSNVSDKDLRE 81
+ FV E RA+ E+NG + K N + FVG L S + +DL+E
Sbjct: 42 FAFVHLQGEGAAERAIRELNGREFKGRNLVVEESRGRPLHSTKVFVGNLSSMCTTEDLQE 101
Query: 82 LFSHFGEILSV-KIPVGKGCGFVQFANRKDAEVALQKLQGTAI-GKQ-TVRLS 131
LF FG++L K+ KG FV N++DA A++ L GT+ G+ +V LS
Sbjct: 102 LFQTFGKVLECDKV---KGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELS 151
WARNING: HSPs involving 536 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 155 155 0.00096 105 3 11 22 0.39 32
30 0.41 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 786
No. of states in DFA: 600 (64 KB)
Total size of DFA: 154 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.85u 0.13s 14.98t Elapsed: 00:00:01
Total cpu time: 14.88u 0.13s 15.01t Elapsed: 00:00:01
Start: Mon May 20 17:02:03 2013 End: Mon May 20 17:02:04 2013
WARNINGS ISSUED: 2