BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038175
(155 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359492062|ref|XP_002284337.2| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 409
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/187 (58%), Positives = 125/187 (66%), Gaps = 37/187 (19%)
Query: 6 VSDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+++S+L ETF+ AKV D+NTG +KGYGFVRFGDENERS+AM EMNG
Sbjct: 185 ASDVSDSLLHETFAGKYPSVKAAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMNGVYC 244
Query: 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
SDG S N TIFVG LD NVSD+DLR+ FS +GE
Sbjct: 245 SSRPMRIGAATPRKSSGYQQQYSSHVQSDGDSMNTTIFVGGLDPNVSDEDLRQPFSQYGE 304
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
I+SVKIPVGKGCGFVQFANR +AE ALQKL GT IGKQTVRLSWG NP NKQ R D N
Sbjct: 305 IVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANKQMRADFGNQ 364
Query: 149 WNGAHYG 155
W+GA+YG
Sbjct: 365 WSGAYYG 371
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 33/144 (22%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDG 58
+ KV + TG ++GYGFV F + + G D
Sbjct: 110 LASMKVIRNKQTGSSEGYGFVEFFSHAAAEKVLQGYAGVLMPNTDQPFRLNWATFSMGDK 169
Query: 59 KSNNA---TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---------GKGCGFVQFA 106
+S+N +IFVG L S+VSD L E F+ G+ SVK KG GFV+F
Sbjct: 170 RSDNGPDLSIFVGDLASDVSDSLLHETFA--GKYPSVKAAKVVFDANTGRSKGYGFVRFG 227
Query: 107 NRKDAEVALQKLQGTAIGKQTVRL 130
+ + A+ ++ G + +R+
Sbjct: 228 DENERSQAMTEMNGVYCSSRPMRI 251
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEV 113
++N TI+VG L + + + L F+ GE+ S+K+ K G GFV+F + AE
Sbjct: 81 ADNRTIWVGDLHNWMDENYLHSCFAATGELASMKVIRNKQTGSSEGYGFVEFFSHAAAEK 140
Query: 114 ALQKLQGTAIGK--QTVRLSWG 133
LQ G + Q RL+W
Sbjct: 141 VLQGYAGVLMPNTDQPFRLNWA 162
>gi|302142363|emb|CBI19566.3| unnamed protein product [Vitis vinifera]
Length = 324
Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/196 (56%), Positives = 125/196 (63%), Gaps = 46/196 (23%)
Query: 6 VSDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+++S+L ETF+ AKV D+NTG +KGYGFVRFGDENERS+AM EMNG
Sbjct: 91 ASDVSDSLLHETFAGKYPSVKAAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMNGVYC 150
Query: 56 ------------------------------------SDGKSNNATIFVGALDSNVSDKDL 79
SDG S N TIFVG LD NVSD+DL
Sbjct: 151 SSRPMRIGAATPRKSSGYQQQYSSHGGYASNGASVQSDGDSMNTTIFVGGLDPNVSDEDL 210
Query: 80 RELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
R+ FS +GEI+SVKIPVGKGCGFVQFANR +AE ALQKL GT IGKQTVRLSWG NP NK
Sbjct: 211 RQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANK 270
Query: 140 QWRGDHINHWNGAHYG 155
Q R D N W+GA+YG
Sbjct: 271 QMRADFGNQWSGAYYG 286
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 33/140 (23%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + G D +S+N
Sbjct: 20 KVIRNKQTGSSEGYGFVEFFSHAAAEKVLQGYAGVLMPNTDQPFRLNWATFSMGDKRSDN 79
Query: 63 A---TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---------GKGCGFVQFANRKD 110
+IFVG L S+VSD L E F+ G+ SVK KG GFV+F + +
Sbjct: 80 GPDLSIFVGDLASDVSDSLLHETFA--GKYPSVKAAKVVFDANTGRSKGYGFVRFGDENE 137
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 138 RSQAMTEMNGVYCSSRPMRI 157
>gi|359492060|ref|XP_003634360.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Vitis vinifera]
Length = 418
Score = 207 bits (528), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 110/196 (56%), Positives = 125/196 (63%), Gaps = 46/196 (23%)
Query: 6 VSDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+++S+L ETF+ AKV D+NTG +KGYGFVRFGDENERS+AM EMNG
Sbjct: 185 ASDVSDSLLHETFAGKYPSVKAAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMNGVYC 244
Query: 56 ------------------------------------SDGKSNNATIFVGALDSNVSDKDL 79
SDG S N TIFVG LD NVSD+DL
Sbjct: 245 SSRPMRIGAATPRKSSGYQQQYSSHGGYASNGASVQSDGDSMNTTIFVGGLDPNVSDEDL 304
Query: 80 RELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
R+ FS +GEI+SVKIPVGKGCGFVQFANR +AE ALQKL GT IGKQTVRLSWG NP NK
Sbjct: 305 RQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANK 364
Query: 140 QWRGDHINHWNGAHYG 155
Q R D N W+GA+YG
Sbjct: 365 QMRADFGNQWSGAYYG 380
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 33/144 (22%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDG 58
+ KV + TG ++GYGFV F + + G D
Sbjct: 110 LASMKVIRNKQTGSSEGYGFVEFFSHAAAEKVLQGYAGVLMPNTDQPFRLNWATFSMGDK 169
Query: 59 KSNNA---TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---------GKGCGFVQFA 106
+S+N +IFVG L S+VSD L E F+ G+ SVK KG GFV+F
Sbjct: 170 RSDNGPDLSIFVGDLASDVSDSLLHETFA--GKYPSVKAAKVVFDANTGRSKGYGFVRFG 227
Query: 107 NRKDAEVALQKLQGTAIGKQTVRL 130
+ + A+ ++ G + +R+
Sbjct: 228 DENERSQAMTEMNGVYCSSRPMRI 251
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEV 113
++N TI+VG L + + + L F+ GE+ S+K+ K G GFV+F + AE
Sbjct: 81 ADNRTIWVGDLHNWMDENYLHSCFAATGELASMKVIRNKQTGSSEGYGFVEFFSHAAAEK 140
Query: 114 ALQKLQGTAIGK--QTVRLSW 132
LQ G + Q RL+W
Sbjct: 141 VLQGYAGVLMPNTDQPFRLNW 161
>gi|255555523|ref|XP_002518798.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223542179|gb|EEF43723.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 438
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 124/199 (62%), Gaps = 54/199 (27%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+++LQETFS AKV D NTG +KGYGFVRFGDENERSRAM+EMNG
Sbjct: 206 AADVTDAMLQETFSSKYLSVKGAKVVTDLNTGRSKGYGFVRFGDENERSRAMMEMNGVYC 265
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
SDG SNN TIFVG +D
Sbjct: 266 SSRPMRIGVATPKKSPAYQQQYSSQALVLAGGHAPNGSMAQGSQSDGDSNNTTIFVGGID 325
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
S++SD+DLR+ FS FGE++SVKIP GKGCGFVQFA+RK AE ALQ L GT IGKQTVRLS
Sbjct: 326 SDISDEDLRQPFSQFGEVVSVKIPAGKGCGFVQFADRKSAEDALQSLNGTTIGKQTVRLS 385
Query: 132 WGHNPGNKQWRGDHINHWN 150
WG +P NKQWRGDH N WN
Sbjct: 386 WGRSPANKQWRGDHNNQWN 404
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 32/139 (23%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------DGKS 60
KV + TG +GYGF+ F + + NGS
Sbjct: 136 KVIRNKQTGQPEGYGFIEFYSHATAEKVLQNYNGSMMPNADQPFRLNWASFAGERRTETG 195
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVK-------IPVG--KGCGFVQFANRKDA 111
++ +IFVG L ++V+D L+E FS + LSVK + G KG GFV+F + +
Sbjct: 196 SDLSIFVGDLAADVTDAMLQETFS--SKYLSVKGAKVVTDLNTGRSKGYGFVRFGDENER 253
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 254 SRAMMEMNGVYCSSRPMRI 272
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVA 114
++ TI+VG L + + L FSH GE+ SVK+ K G GF++F + AE
Sbjct: 104 DSKTIWVGDLLHWMDETYLHSCFSHTGEVTSVKVIRNKQTGQPEGYGFIEFYSHATAEKV 163
Query: 115 LQKLQGTAI--GKQTVRLSWGHNPGNKQ 140
LQ G+ + Q RL+W G ++
Sbjct: 164 LQNYNGSMMPNADQPFRLNWASFAGERR 191
>gi|224123466|ref|XP_002330321.1| predicted protein [Populus trichocarpa]
gi|222871356|gb|EEF08487.1| predicted protein [Populus trichocarpa]
Length = 397
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 126/199 (63%), Gaps = 54/199 (27%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+S+LQETF+ AKV IDSNTG +KGYGFVRFGDENE++RAM+EMNG
Sbjct: 165 AADVTDSMLQETFAGKYPSVKGAKVVIDSNTGRSKGYGFVRFGDENEKTRAMMEMNGAFC 224
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
SDG SNN TIFVG +D
Sbjct: 225 SSRPMRIGVATPKKPSAYQQQYSSQALVLAGGHASNGAMAQGSQSDGDSNNTTIFVGGID 284
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
S+V+D+DLR+ FS FGE++SVKIPVGKGC FVQFANRK+AE ALQ L GT IGKQTVRLS
Sbjct: 285 SDVTDEDLRQPFSQFGEVVSVKIPVGKGCAFVQFANRKNAEDALQSLNGTTIGKQTVRLS 344
Query: 132 WGHNPGNKQWRGDHINHWN 150
WG P NKQWRGDH N W+
Sbjct: 345 WGRTPANKQWRGDHGNQWH 363
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
TI+VG L + + L FSH GE+ SVKI K G GFV+F +R AE LQ
Sbjct: 66 TIWVGDLLHWMDEAYLHNCFSHTGEVSSVKIIRNKQTGQLEGYGFVEFYSRAAAEKVLQS 125
Query: 118 LQGTAIG--KQTVRLSWGHNPGNKQ 140
G+ + +Q RL+W G ++
Sbjct: 126 YSGSMMPNTEQPFRLNWASFAGERR 150
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 28/140 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------D 57
S K+ + TG +GYGFV F + + +GS
Sbjct: 92 SSVKIIRNKQTGQLEGYGFVEFYSRAAAEKVLQSYSGSMMPNTEQPFRLNWASFAGERRA 151
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKD 110
++ +IFVG L ++V+D L+E F+ + + K+ + KG GFV+F + +
Sbjct: 152 DPGSDLSIFVGDLAADVTDSMLQETFAGKYPSVKGAKVVIDSNTGRSKGYGFVRFGDENE 211
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 212 KTRAMMEMNGAFCSSRPMRI 231
>gi|224137382|ref|XP_002327112.1| predicted protein [Populus trichocarpa]
gi|222835427|gb|EEE73862.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/195 (54%), Positives = 127/195 (65%), Gaps = 45/195 (23%)
Query: 6 VSDITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+S+LQETF AKV D+NTG +KGYGFVRFGD++ER++AM EMNG
Sbjct: 194 AADVTDSLLQETFVSKYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERTQAMTEMNGVYC 253
Query: 56 -----------------------------------SDGKSNNATIFVGALDSNVSDKDLR 80
SDG SNN TIFVG LD NV+D+DL+
Sbjct: 254 SSRPMRIGAATPRKSSGYQQQGGYGSNGASAQGFQSDGDSNNTTIFVGGLDPNVTDEDLK 313
Query: 81 ELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+ FS +GEI+SVKIPVGKGCGFVQFANR +AE ALQKL GT IGKQTVRLSWG NP NKQ
Sbjct: 314 QPFSQYGEIVSVKIPVGKGCGFVQFANRDNAEEALQKLNGTVIGKQTVRLSWGRNPANKQ 373
Query: 141 WRGDHINHWNGAHYG 155
+R D + WNGA+YG
Sbjct: 374 FRADFGSPWNGAYYG 388
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + G D +S+N
Sbjct: 123 KVIRNKQTGLSEGYGFVEFLTHATAEKVLQNYGGILMPNTEQPFRLNWATFSTGDKRSDN 182
Query: 63 A---TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L ++V+D L+E F S + + + K+ KG GFV+F + +
Sbjct: 183 APDLSIFVGDLAADVTDSLLQETFVSKYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERT 242
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 243 QAMTEMNGVYCSSRPMRI 260
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKD 110
+G N TI++G L + + L F GEI S+K+ + +G GFV+F
Sbjct: 87 EGSGENKTIWIGDLHHWMDENYLHSCFVSTGEIASIKVIRNKQTGLSEGYGFVEFLTHAT 146
Query: 111 AEVALQKLQGTAIG--KQTVRLSW 132
AE LQ G + +Q RL+W
Sbjct: 147 AEKVLQNYGGILMPNTEQPFRLNW 170
>gi|449446975|ref|XP_004141245.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
gi|449498692|ref|XP_004160607.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
Length = 426
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 111/200 (55%), Positives = 127/200 (63%), Gaps = 51/200 (25%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+S+L ETFS AKV ID+NTG +KGYGFVRFGD+NERS+AM EMNG
Sbjct: 185 AADVTDSLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEMNGIYC 244
Query: 56 ----------------------------------------SDGKSNNATIFVGALDSNVS 75
S+G S N TIFVG LD NV+
Sbjct: 245 SSRPMRIGAATPRKSSGYQQQHSSQGGGYSTNGYFSQGLQSEGDSANTTIFVGGLDPNVT 304
Query: 76 DKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
D+DLR+ FS +GEI+SVKIPVGKGCGFVQFANR DAE ALQKL GT IGKQTVRLSWG N
Sbjct: 305 DEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNGTVIGKQTVRLSWGRN 364
Query: 136 PGNKQWRGDHINHWNGAHYG 155
P NKQ+R D N WNGA+YG
Sbjct: 365 PANKQFR-DFGNQWNGAYYG 383
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGK 59
S KV + TG ++GYGFV F + + +G D +
Sbjct: 111 SSMKVIRNKQTGLSEGYGFVEFLSHTTAEKVLQNYSGMFMPSTEQTFRLNWATFSTGDKR 170
Query: 60 SNN---ATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
S+N +IFVG L ++V+D L E F S F + + K+ + KG GFV+F +
Sbjct: 171 SDNDPDLSIFVGDLAADVTDSLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDN 230
Query: 110 DAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 231 ERSQAMTEMNGIYCSSRPMRI 251
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEV 113
S N TI+VG L + + L FS GEI S+K+ + +G GFV+F + AE
Sbjct: 81 SENKTIWVGDLHHWMDESYLHSCFSSVGEISSMKVIRNKQTGLSEGYGFVEFLSHTTAEK 140
Query: 114 ALQKLQGTAIG--KQTVRLSW 132
LQ G + +QT RL+W
Sbjct: 141 VLQNYSGMFMPSTEQTFRLNW 161
>gi|224067280|ref|XP_002302445.1| predicted protein [Populus trichocarpa]
gi|222844171|gb|EEE81718.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/195 (54%), Positives = 127/195 (65%), Gaps = 45/195 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+S+LQETF+ AKV D+NTG +KGYGFVRFGD+ ER++AM EMNG
Sbjct: 197 AADVTDSLLQETFASKYQSVKSAKVVFDANTGRSKGYGFVRFGDDTERTQAMTEMNGVYC 256
Query: 56 -----------------------------------SDGKSNNATIFVGALDSNVSDKDLR 80
SDG S+NATIFVG LD NV+D+DL+
Sbjct: 257 SSRPMRIGAATPRKSSGYQQQGGYGSNGASSQGFQSDGDSSNATIFVGGLDPNVTDEDLK 316
Query: 81 ELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+ FS +GEI+SVKIPV KGCGFVQFANR +AE ALQKL GT IGKQTVRLSWG NPG+KQ
Sbjct: 317 QPFSQYGEIVSVKIPVSKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPGHKQ 376
Query: 141 WRGDHINHWNGAHYG 155
R D + WNGA+YG
Sbjct: 377 HRADFSSPWNGAYYG 391
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV TG ++GYGFV F + + G D +S+N
Sbjct: 126 KVIRSKQTGLSEGYGFVEFFTHATAEKVLQNYGGILMPNTEQPFRLNWATFSTGDKRSDN 185
Query: 63 A---TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+IFVG L ++V+D L+E F S + + S K+ KG GFV+F + +
Sbjct: 186 TPDLSIFVGDLAADVTDSLLQETFASKYQSVKSAKVVFDANTGRSKGYGFVRFGDDTERT 245
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 246 QAMTEMNGVYCSSRPMRI 263
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANR 108
GS G +N TI +G L + + L F+ GEI S+K+ + +G GFV+F
Sbjct: 90 GSSG--DNKTICIGDLHHWMDENYLHTCFASTGEIASIKVIRSKQTGLSEGYGFVEFFTH 147
Query: 109 KDAEVALQKLQGTAIG--KQTVRLSW 132
AE LQ G + +Q RL+W
Sbjct: 148 ATAEKVLQNYGGILMPNTEQPFRLNW 173
>gi|356552180|ref|XP_003544447.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 425
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/190 (54%), Positives = 125/190 (65%), Gaps = 40/190 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+S+L ETF+ AKV D+NTG +KGYGFVRFGD+N+R++AM +MNG
Sbjct: 198 AADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNQRTQAMTQMNGVYC 257
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
S+ S N TIFVG LD NVSD+DLR+ FS
Sbjct: 258 SSRPMRIGAATPRKSSGHQQGGQSNGTANQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQ 317
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
+GEI+SVKIPVGKGCGFVQFANR +AE ALQKL GT+IGKQTVRLSWG NP NKQ+R D
Sbjct: 318 YGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTSIGKQTVRLSWGRNPANKQFRMDF 377
Query: 146 INHWNGAHYG 155
N W GA+YG
Sbjct: 378 GNPWTGAYYG 387
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFAN 107
NGS G+ N TI++G L + + L F+ GEI S+K+ + +G GFV+F +
Sbjct: 90 NGSGGE--NKTIWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYS 147
Query: 108 RKDAEVALQKLQGTAIG--KQTVRLSWG 133
AE LQ G + +Q RL+W
Sbjct: 148 HATAEKVLQNYAGILMPNTEQPFRLNWA 175
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 36/158 (22%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRF-----GDENERSRAMIEM---------------NGSD 57
S KV + TG ++GYGFV F ++ ++ A I M G
Sbjct: 123 ISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDK 182
Query: 58 GKSN--NATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANR 108
G N + +IFVG L ++V+D L E F S + + + K+ KG GFV+F +
Sbjct: 183 GSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDD 242
Query: 109 KDAEVALQKLQGTA-------IGKQTVRLSWGHNPGNK 139
A+ ++ G IG T R S GH G +
Sbjct: 243 NQRTQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQ 280
>gi|224105517|ref|XP_002313840.1| predicted protein [Populus trichocarpa]
gi|222850248|gb|EEE87795.1| predicted protein [Populus trichocarpa]
Length = 412
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/201 (52%), Positives = 125/201 (62%), Gaps = 54/201 (26%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+++LQETF+ AKV DSNTG +KGYGFVRFGDENE++RA+ EMNG
Sbjct: 180 AADVTDAMLQETFATKYASVKGAKVVADSNTGRSKGYGFVRFGDENEKTRAITEMNGAYC 239
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
SDG SNN TIFVG +D
Sbjct: 240 SSRPMRIGVATPKKPSAYQQQYSSQALVLAGGHASNGTMAQGSQSDGDSNNTTIFVGGID 299
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
S+V+D+DLR+ FS FGE++SVK+P GKGC FVQFANRK+AE ALQ L GT IGKQTVRLS
Sbjct: 300 SDVTDEDLRQPFSQFGEVVSVKMPTGKGCAFVQFANRKNAEDALQSLNGTTIGKQTVRLS 359
Query: 132 WGHNPGNKQWRGDHINHWNGA 152
WG P NKQWRGDH N W+GA
Sbjct: 360 WGRTPANKQWRGDHGNQWHGA 380
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L FSH GE+ SVKI K G GFV+F + AE LQ
Sbjct: 81 TVWVGDLLHWMDETYLHNCFSHTGEVSSVKIIRNKQTGQLEGYGFVEFYSHAAAEKVLQS 140
Query: 118 LQGTAIGK--QTVRLSWGHNPGNKQ 140
G+ + Q RL+W G ++
Sbjct: 141 YSGSMMPNTDQPFRLNWASFAGERR 165
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 28/140 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------D 57
S K+ + TG +GYGFV F + + +GS
Sbjct: 107 SSVKIIRNKQTGQLEGYGFVEFYSHAAAEKVLQSYSGSMMPNTDQPFRLNWASFAGERRA 166
Query: 58 GKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKD 110
++ +IFVG L ++V+D L+E F + + + K+ KG GFV+F + +
Sbjct: 167 DAGSDLSIFVGDLAADVTDAMLQETFATKYASVKGAKVVADSNTGRSKGYGFVRFGDENE 226
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 227 KTRAITEMNGAYCSSRPMRI 246
>gi|449523756|ref|XP_004168889.1| PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis
sativus]
Length = 437
Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/198 (54%), Positives = 126/198 (63%), Gaps = 53/198 (26%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T++ILQETFS AKV IDSN+G +KGYGFVRFGDENER+RAM EMNG
Sbjct: 201 AADVTDAILQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYC 260
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
SD +SNN TIFVG LDS
Sbjct: 261 SSRPMRIGVATPKKASGYQQGYASQALVLAGGHPNGMAVQGSQSDSESNNTTIFVGGLDS 320
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+VSD+DL++ FS FG+++SVKIP+GKGCGFVQFANRK+AE A+Q L GT IGKQTVRLSW
Sbjct: 321 DVSDEDLKQAFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSW 380
Query: 133 GHNPGNKQWRGDHINHWN 150
G + GNKQWRGD N WN
Sbjct: 381 GRSTGNKQWRGDSNNQWN 398
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------- 56
S KV + TG ++GYGFV F + + NG+
Sbjct: 127 SSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQNYNGTIMPNTELPFRLNWATFSANDRR 186
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
++ +IFVG L ++V+D L+E F S + + K+ + KG GFV+F +
Sbjct: 187 PDTGSDLSIFVGDLAADVTDAILQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDEN 246
Query: 110 DAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 247 ERTRAMTEMNGIYCSSRPMRI 267
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE+ SVK+ K G GFV+F + AE LQ
Sbjct: 101 TLWIGDLQPWMDETYLNNCFAHTGEVSSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQN 160
Query: 118 LQGTAIGKQTV--RLSWG 133
GT + + RL+W
Sbjct: 161 YNGTIMPNTELPFRLNWA 178
>gi|356562301|ref|XP_003549410.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 401
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/190 (54%), Positives = 124/190 (65%), Gaps = 40/190 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+S+L ETF+ AKV D+NTG +KGYGFVRFGD+NER++AM +MNG
Sbjct: 174 AADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTQAMTQMNGVYC 233
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
S+ S N TIFVG LD NVSD+DLR+ FS
Sbjct: 234 SSRPMRIGAATPRKSSGHQQGGLSNGTANQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQ 293
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
+GEI+SVKIPVGKGCGFVQFANR +AE ALQKL GT IGKQTVRLSWG NP NKQ+R D
Sbjct: 294 YGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDF 353
Query: 146 INHWNGAHYG 155
+ W GA+YG
Sbjct: 354 GSPWTGAYYG 363
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFAN 107
NGS G+ N TI++G L + + L F+ GEI S+K+ + +G GFV+F +
Sbjct: 66 NGSGGE--NKTIWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYS 123
Query: 108 RKDAEVALQKLQGTAI--GKQTVRLSWG 133
AE LQ G + +Q RL+W
Sbjct: 124 HATAEKVLQNYAGILMPNAEQPFRLNWA 151
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 36/156 (23%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRF-----GDENERSRAMIEM---------------NGSD 57
S KV + TG ++GYGFV F ++ ++ A I M G
Sbjct: 99 ISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNAEQPFRLNWATFSTGDK 158
Query: 58 GKSN--NATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANR 108
G N + +IFVG L ++V+D L E F S + + + K+ KG GFV+F +
Sbjct: 159 GSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDD 218
Query: 109 KDAEVALQKLQGTA-------IGKQTVRLSWGHNPG 137
+ A+ ++ G IG T R S GH G
Sbjct: 219 NERTQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQG 254
>gi|147856810|emb|CAN81343.1| hypothetical protein VITISV_008697 [Vitis vinifera]
Length = 536
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/201 (54%), Positives = 125/201 (62%), Gaps = 51/201 (25%)
Query: 6 VSDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+++S+L ETF+ AKV D+NTG +KGYGFVRFGDENERS+AM EMNG
Sbjct: 73 ASDVSDSLLHETFAGKYPSVKAAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMNGVYC 132
Query: 56 ------------------------------------SDGKSNNATIFVGALDSNVSDKDL 79
SDG S N TIFVG LD NVSD+DL
Sbjct: 133 SSRPMRIGAATPRKSSGYQQQYSSHGGYASNGASVQSDGDSMNTTIFVGGLDPNVSDEDL 192
Query: 80 RELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
R+ FS +GEI+SVKIPVGKGCGFVQFANR +AE ALQKL GT IGKQTVRLSWG NP NK
Sbjct: 193 RQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANK 252
Query: 140 Q-----WRGDHINHWNGAHYG 155
Q R D N W+GA+YG
Sbjct: 253 QANSLFMRADFGNQWSGAYYG 273
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 33/140 (23%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + G D +S+N
Sbjct: 2 KVIRNKQTGSSEGYGFVEFFSHAAAEKVLQGYAGVLMPNTDQPFRLNWATFSMGDKRSDN 61
Query: 63 A---TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---------GKGCGFVQFANRKD 110
+IFVG L S+VSD L E F+ G+ SVK KG GFV+F + +
Sbjct: 62 GPDLSIFVGDLASDVSDSLLHETFA--GKYPSVKAAKVVFDANTGRSKGYGFVRFGDENE 119
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 120 RSQAMTEMNGVYCSSRPMRI 139
>gi|449470045|ref|XP_004152729.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
gi|449496017|ref|XP_004160013.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
Length = 429
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 123/193 (63%), Gaps = 48/193 (24%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+S+L ETF+ AKV D NTG +KGYGFVRFGD+NERS+AM EMNG
Sbjct: 193 AADVTDSVLHETFASKYSSVKAAKVVYDPNTGCSKGYGFVRFGDDNERSQAMTEMNGIYC 252
Query: 56 --------------------------------------SDGKSNNATIFVGALDSNVSDK 77
SDG N TIF+G LD NV+D+
Sbjct: 253 SSRPMRIGAATPKKSSGYQQQYSSQGYASNGSFSHGHQSDGDFTNTTIFIGGLDPNVTDE 312
Query: 78 DLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
DL++LFS GEI+SVKIPVGKGCGF+QFANRK+AE ALQKL GT IGKQTVRLSWG +P
Sbjct: 313 DLKQLFSQHGEIVSVKIPVGKGCGFIQFANRKNAEEALQKLNGTVIGKQTVRLSWGRSPT 372
Query: 138 NKQWRGDHINHWN 150
NKQ+RGD+ NHW+
Sbjct: 373 NKQYRGDYGNHWS 385
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 29/142 (20%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNGS--------------DG 58
S KV + TG ++GYGFV F + + I M + D
Sbjct: 118 ISSLKVIRNKQTGISEGYGFVEFFSHTTAEKVLQNYSSILMPNTEQAFRLNWATFSTGDK 177
Query: 59 KSNNA---TIFVGALDSNVSDKDLRELF-SHFGEILSVKI---P---VGKGCGFVQFANR 108
+S N +IFVG L ++V+D L E F S + + + K+ P KG GFV+F +
Sbjct: 178 RSENGSDLSIFVGDLAADVTDSVLHETFASKYSSVKAAKVVYDPNTGCSKGYGFVRFGDD 237
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 238 NERSQAMTEMNGIYCSSRPMRI 259
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEV 113
S N TI+VG L + + L F+ GEI S+K+ + +G GFV+F + AE
Sbjct: 89 SENKTIWVGDLQHWMDENYLHSCFASTGEISSLKVIRNKQTGISEGYGFVEFFSHTTAEK 148
Query: 114 ALQKLQGTAIG--KQTVRLSWG 133
LQ + +Q RL+W
Sbjct: 149 VLQNYSSILMPNTEQAFRLNWA 170
>gi|225428741|ref|XP_002285031.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 416
Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 121/199 (60%), Gaps = 54/199 (27%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+++LQETF+ AKV DSNTG +KGYGFVRFGDENERSRAM EMNG
Sbjct: 184 ASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSRAMNEMNGIYC 243
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
++G S N TIFVG LD
Sbjct: 244 SSRPMRIGVATPKKASGYQQQYSSQALVLAGGNASNGAVAQGSQANGDSTNTTIFVGGLD 303
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
S V+D+DLR+ FS FGE++SVKIPVGKGCGFVQFANR AE ALQ+L GT IGKQTVRLS
Sbjct: 304 SEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRNSAEDALQRLNGTVIGKQTVRLS 363
Query: 132 WGHNPGNKQWRGDHINHWN 150
WG NP +KQWR D N WN
Sbjct: 364 WGRNPASKQWRNDSNNQWN 382
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-------------------DGK 59
S K+ + TG ++GYGFV F + + NG+ D +
Sbjct: 110 SSIKIIRNKQTGQSEGYGFVEFFSRATAEKILHSYNGTLMPNTEQPFRLNWATFSTGDRR 169
Query: 60 SN---NATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
++ + +IFVG L S+V+D L+E F + + + K+ KG GFV+F +
Sbjct: 170 TDAGSDLSIFVGDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDEN 229
Query: 110 DAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 230 ERSRAMNEMNGIYCSSRPMRI 250
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGE--ILSVKIPVGK------GCGFVQFANRKDAEVAL 115
T++VG L + D LR F H GE + S+KI K G GFV+F +R AE L
Sbjct: 82 TLWVGDLHQWMDDNYLRTCFGHTGEVKVSSIKIIRNKQTGQSEGYGFVEFFSRATAEKIL 141
Query: 116 QKLQGTAIG--KQTVRLSWG 133
GT + +Q RL+W
Sbjct: 142 HSYNGTLMPNTEQPFRLNWA 161
>gi|297741313|emb|CBI32444.3| unnamed protein product [Vitis vinifera]
Length = 342
Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 121/199 (60%), Gaps = 54/199 (27%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+++LQETF+ AKV DSNTG +KGYGFVRFGDENERSRAM EMNG
Sbjct: 110 ASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSRAMNEMNGIYC 169
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
++G S N TIFVG LD
Sbjct: 170 SSRPMRIGVATPKKASGYQQQYSSQALVLAGGNASNGAVAQGSQANGDSTNTTIFVGGLD 229
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
S V+D+DLR+ FS FGE++SVKIPVGKGCGFVQFANR AE ALQ+L GT IGKQTVRLS
Sbjct: 230 SEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRNSAEDALQRLNGTVIGKQTVRLS 289
Query: 132 WGHNPGNKQWRGDHINHWN 150
WG NP +KQWR D N WN
Sbjct: 290 WGRNPASKQWRNDSNNQWN 308
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + D LR F H GE+ S+KI K G GFV+F +R AE L
Sbjct: 10 TLWVGDLHQWMDDNYLRTCFGHTGEVSSIKIIRNKQTGQSEGYGFVEFFSRATAEKILHS 69
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +Q RL+W
Sbjct: 70 YNGTLMPNTEQPFRLNWA 87
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-------------------DGK 59
S K+ + TG ++GYGFV F + + NG+ D +
Sbjct: 36 SSIKIIRNKQTGQSEGYGFVEFFSRATAEKILHSYNGTLMPNTEQPFRLNWATFSTGDRR 95
Query: 60 SN---NATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
++ + +IFVG L S+V+D L+E F + + + K+ KG GFV+F +
Sbjct: 96 TDAGSDLSIFVGDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDEN 155
Query: 110 DAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 156 ERSRAMNEMNGIYCSSRPMRI 176
>gi|356510359|ref|XP_003523906.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 409
Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 102/190 (53%), Positives = 123/190 (64%), Gaps = 40/190 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+S+L ETF+ AKV D+NTG +KGYGFVRFGD+NERS+AM EMNG
Sbjct: 181 AADVTDSMLHETFTNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYC 240
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
S+ S N TIFVG LD NV+ +DL++ FS
Sbjct: 241 SSRPMRIGAATPRKTSGYQQGSQSNGTSSQSEADSTNTTIFVGGLDPNVTAEDLKQPFSQ 300
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
+GEI+SVKIPVGKGCGFVQFANR +AE ALQKL GT IGKQ VRLSWG +P NKQ+R D
Sbjct: 301 YGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRSPANKQFRADF 360
Query: 146 INHWNGAHYG 155
N W+GA+YG
Sbjct: 361 GNAWSGAYYG 370
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 29/142 (20%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRF-----GDENERSRAMIEMNGS--------------DG 58
S KV + TG ++GYGFV F D+ ++ A I M + D
Sbjct: 106 ISSIKVIRNKQTGLSEGYGFVEFYSHGTADKVLQNYAGILMPNTEQPFRLNWATFSTGDK 165
Query: 59 KSNNA---TIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANR 108
+S+N +IFVG L ++V+D L E F++ + + + K+ KG GFV+F +
Sbjct: 166 RSDNVPDLSIFVGDLAADVTDSMLHETFTNRYPSVKAAKVVFDANTGRSKGYGFVRFGDD 225
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 226 NERSQAMTEMNGVYCSSRPMRI 247
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEV 113
+ N T++VG L + + L F+ GEI S+K+ + +G GFV+F + A+
Sbjct: 77 AENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTADK 136
Query: 114 ALQKLQGTAIG--KQTVRLSWG 133
LQ G + +Q RL+W
Sbjct: 137 VLQNYAGILMPNTEQPFRLNWA 158
>gi|147781769|emb|CAN74486.1| hypothetical protein VITISV_029928 [Vitis vinifera]
Length = 434
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 121/199 (60%), Gaps = 54/199 (27%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+++LQETF+ AKV DSNTG +KGYGFVRFGDENERSRAM EMNG
Sbjct: 202 ASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSRAMNEMNGIYC 261
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
++G S N TIFVG LD
Sbjct: 262 SSRPMRIGVATPKKASGYQQQYSSQALVLAGGNASNGAVAQGSQANGDSTNTTIFVGGLD 321
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
S V+D+DLR+ FS FGE++SVKIPVGKGCGFVQFANR AE ALQ+L GT IGKQTVRLS
Sbjct: 322 SEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRNSAEDALQRLNGTVIGKQTVRLS 381
Query: 132 WGHNPGNKQWRGDHINHWN 150
WG NP +KQWR D N WN
Sbjct: 382 WGRNPASKQWRNDSNNQWN 400
>gi|449455232|ref|XP_004145357.1| PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis
sativus]
Length = 436
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/198 (53%), Positives = 125/198 (63%), Gaps = 54/198 (27%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T++ILQETFS AKV IDSN+G +KGYGF RFGDENER+RAM EMNG
Sbjct: 201 AADVTDAILQETFSSRYTSVKGAKVVIDSNSGPSKGYGF-RFGDENERTRAMTEMNGIYC 259
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
SD +SNN TIFVG LDS
Sbjct: 260 SSRPMRIGVATPKKASGYQQGYASQALVLAGGHPNGMAVQGSQSDSESNNTTIFVGGLDS 319
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+VSD+DL++ FS FG+++SVKIP+GKGCGFVQFANRK+AE A+Q L GT IGKQTVRLSW
Sbjct: 320 DVSDEDLKQAFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSW 379
Query: 133 GHNPGNKQWRGDHINHWN 150
G + GNKQWRGD N WN
Sbjct: 380 GRSTGNKQWRGDSNNQWN 397
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE+ SVK+ K G GFV+F + AE LQ
Sbjct: 101 TLWIGDLQPWMDETYLNNCFAHTGEVSSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQN 160
Query: 118 LQGTAIGKQTV--RLSWG 133
GT + + RL+W
Sbjct: 161 YNGTIMPNTELPFRLNWA 178
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 30/141 (21%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------- 56
S KV + TG ++GYGFV F + + NG+
Sbjct: 127 SSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQNYNGTIMPNTELPFRLNWATFSANDRR 186
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
++ +IFVG L ++V+D L+E F S + + K+ + KG GF +F +
Sbjct: 187 PDTGSDLSIFVGDLAADVTDAILQETFSSRYTSVKGAKVVIDSNSGPSKGYGF-RFGDEN 245
Query: 110 DAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 246 ERTRAMTEMNGIYCSSRPMRI 266
>gi|255538402|ref|XP_002510266.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223550967|gb|EEF52453.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 443
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 125/196 (63%), Gaps = 46/196 (23%)
Query: 6 VSDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+S+L ETF SR AKV D+NTG +KGYGFVRFGD+NER++AM EMNG
Sbjct: 210 AADVTDSLLHETFVSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTQAMTEMNGVYC 269
Query: 56 -----------------------------------SDGKSNNATIFVGALDSNVSDKDLR 80
+DG S N TIFVG LD NV+D+DL+
Sbjct: 270 SSRAMRIGAATPRKSTGYQHQGGYVSNGASGQAFQADGDSTNTTIFVGGLDPNVTDEDLK 329
Query: 81 ELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK- 139
+ FS +GEI+SVKIPVGKGCGFVQFA+R +AE ALQKL GT IGKQTVRLSWG NP NK
Sbjct: 330 QPFSQYGEIVSVKIPVGKGCGFVQFASRSNAEEALQKLNGTVIGKQTVRLSWGRNPANKQ 389
Query: 140 QWRGDHINHWNGAHYG 155
Q R D N W GA+YG
Sbjct: 390 QLRSDFGNQWGGAYYG 405
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + G D +S+N
Sbjct: 139 KVIRNKQTGLSEGYGFVEFYTHATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDN 198
Query: 63 A---TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L ++V+D L E F S + + + K+ KG GFV+F + +
Sbjct: 199 APDLSIFVGDLAADVTDSLLHETFVSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERT 258
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 259 QAMTEMNGVYCSSRAMRI 276
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVAL 115
N T+++G L + + L F+ GEI+S+K+ + +G GFV+F AE L
Sbjct: 108 NRTVWIGDLHHWMDENYLHTCFASTGEIVSIKVIRNKQTGLSEGYGFVEFYTHATAEKVL 167
Query: 116 QKLQGTAIG--KQTVRLSWG 133
Q G + +Q RL+W
Sbjct: 168 QNYAGILMPNTEQPFRLNWA 187
>gi|15220241|ref|NP_175181.1| RNA-binding protein 47C' [Arabidopsis thaliana]
gi|75337808|sp|Q9SX80.1|R47CP_ARATH RecName: Full=Polyadenylate-binding protein RBP47C';
Short=Poly(A)-binding protein RBP47C'; AltName:
Full=RNA-binding protein 47C'; Short=AtRBP47C prime;
Short=AtRBP47C'
gi|5668811|gb|AAD46037.1|AC007519_22 Contains 3 PF|00076 RNA recognition motif domains. EST gb|T20424
comes from this gene [Arabidopsis thaliana]
gi|110743035|dbj|BAE99410.1| hypothetical protein [Arabidopsis thaliana]
gi|124301030|gb|ABN04767.1| At1g47500 [Arabidopsis thaliana]
gi|332194057|gb|AEE32178.1| RNA-binding protein 47C' [Arabidopsis thaliana]
Length = 434
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/192 (52%), Positives = 122/192 (63%), Gaps = 42/192 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+++++L ETFS AKV +D+NTG +KGYGFVRFGDENER++AM EMNG
Sbjct: 207 APDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKC 266
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
S+G + N TIFVG LDS+V+D+DL++ F
Sbjct: 267 SSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPF 326
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
S FGEI+SVKIPVGKGCGFVQF NR +AE AL+KL GT IGKQTVRLSWG NP NKQ R
Sbjct: 327 SEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRD 386
Query: 144 DHINHWNGAHYG 155
+ N W +YG
Sbjct: 387 KYGNQWVDPYYG 398
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 30/139 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV + + G ++GYGFV F + + + E NG+ +
Sbjct: 135 KVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLEN 194
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L +VSD L E FS + + + K+ + KG GFV+F + +
Sbjct: 195 NGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENER 254
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 255 TKAMTEMNGVKCSSRAMRI 273
>gi|388494114|gb|AFK35123.1| unknown [Medicago truncatula]
Length = 425
Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/189 (53%), Positives = 121/189 (64%), Gaps = 41/189 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+S+L ETFS AKV D+NTG +KGYGFVRFGDE+ERS+AM +MNG
Sbjct: 198 AADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYC 257
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
S+ S N TIFVG LDSNV+D+DL++ FS
Sbjct: 258 SSRPMRIGAATPRKSSGHQPGGQTNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQ 317
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
+GEI SVKIPVGKGCGFVQFANR +AE ALQKL GT IGKQTVRLSWG NP KQ+R D
Sbjct: 318 YGEIASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQFRLD- 376
Query: 146 INHWNGAHY 154
+ W G ++
Sbjct: 377 VGSWAGPYF 385
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 36/158 (22%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRF-----GDENERSRAMIEMNGSDGK------------- 59
+ KV + ++G ++GYGF F ++ ++ A I M +D
Sbjct: 123 ITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNYAGILMPNADQAFRLNWATFSTGDK 182
Query: 60 -SNNAT---IFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANR 108
S+N T IFVG L ++V+D L E FS + + + K+ KG GFV+F +
Sbjct: 183 GSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDE 242
Query: 109 KDAEVALQKLQGTA-------IGKQTVRLSWGHNPGNK 139
+ A+ ++ G IG T R S GH PG +
Sbjct: 243 SERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQ 280
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANR 108
GS+G+ N T+++G L S + + L F+ GEI SVK+ + +G GF +F +
Sbjct: 91 GSNGE--NKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSH 148
Query: 109 KDAEVALQKLQGTAI--GKQTVRLSWG 133
AE LQ G + Q RL+W
Sbjct: 149 ATAEKVLQNYAGILMPNADQAFRLNWA 175
>gi|15222783|ref|NP_175383.1| RNA-binding protein 47A [Arabidopsis thaliana]
gi|378522727|sp|F4I3B3.1|RB47A_ARATH RecName: Full=Polyadenylate-binding protein RBP47A;
Short=Poly(A)-binding protein RBP47A; AltName:
Full=RNA-binding protein 47A; Short=AtRBP47A
gi|332194327|gb|AEE32448.1| RNA-binding protein 47A [Arabidopsis thaliana]
Length = 445
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/197 (51%), Positives = 123/197 (62%), Gaps = 50/197 (25%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+++++L ETF+ AKV IDSNTG +KGYGFVRFGDENERSRAM EMNG
Sbjct: 221 APDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFC 280
Query: 56 ---------------------------------------SDGKSNNATIFVGALDSNVSD 76
SDG+SNN+TIFVG LD++V++
Sbjct: 281 SSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTE 340
Query: 77 KDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136
+DL + FS FGE++SVKIPVGKGCGFVQFANR+ AE A+ L GT IGK TVRLSWG +P
Sbjct: 341 EDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP 400
Query: 137 GNKQWRGDHINHWNGAH 153
NKQWR D N WNG +
Sbjct: 401 -NKQWRSDSGNQWNGGY 416
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANR 108
G G + T++VG L + + L FSH E+ SVK+ K G GFV+F +R
Sbjct: 111 GGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSR 170
Query: 109 KDAEVALQKLQGTAI--GKQTVRLSW 132
AE ALQ G + +Q RL+W
Sbjct: 171 SAAEEALQSFSGVTMPNAEQPFRLNW 196
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 30/142 (21%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGKSN 61
S KV + T ++GYGFV F + A+ +G S G+
Sbjct: 146 SSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKR 205
Query: 62 ------NATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANR 108
+ +IFVG L +VSD L E F+ + + K+ + KG GFV+F +
Sbjct: 206 ASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDE 265
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 266 NERSRAMTEMNGAFCSSRQMRV 287
>gi|297852632|ref|XP_002894197.1| hypothetical protein ARALYDRAFT_474095 [Arabidopsis lyrata subsp.
lyrata]
gi|297340039|gb|EFH70456.1| hypothetical protein ARALYDRAFT_474095 [Arabidopsis lyrata subsp.
lyrata]
Length = 450
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/197 (51%), Positives = 123/197 (62%), Gaps = 50/197 (25%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+++++L ETF+ AKV IDSNTG +KGYGFVRFGDENERSRAM EMNG
Sbjct: 226 APDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFC 285
Query: 56 ---------------------------------------SDGKSNNATIFVGALDSNVSD 76
SDG+SNN+TIFVG LD++V++
Sbjct: 286 SSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSLSDGESNNSTIFVGGLDADVTE 345
Query: 77 KDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136
+DL + FS FGE++SVKIPVGKGCGFVQFANR+ AE A+ L GT IGK TVRLSWG +P
Sbjct: 346 EDLMQPFSQFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP 405
Query: 137 GNKQWRGDHINHWNGAH 153
NKQWR D N WNG +
Sbjct: 406 -NKQWRSDTGNQWNGGY 421
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANR 108
G G + T++VG L + + L FSH E+ SVK+ K G GFV+F +R
Sbjct: 116 GGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSR 175
Query: 109 KDAEVALQKLQGTAI--GKQTVRLSW 132
AE ALQ G + +Q RL+W
Sbjct: 176 SAAEEALQSFSGVTMPNAEQPFRLNW 201
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 30/142 (21%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGKSN 61
S KV + T ++GYGFV F + A+ +G S G+
Sbjct: 151 SSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKR 210
Query: 62 ------NATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANR 108
+ +IFVG L +VSD L E F+ + + K+ + KG GFV+F +
Sbjct: 211 ASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDE 270
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 271 NERSRAMTEMNGAFCSSRQMRV 292
>gi|15230291|ref|NP_188544.1| RNA-binding protein 47B [Arabidopsis thaliana]
gi|122246579|sp|Q0WW84.1|RB47B_ARATH RecName: Full=Polyadenylate-binding protein RBP47B;
Short=Poly(A)-binding protein RBP47B; AltName:
Full=RNA-binding protein 47B; Short=AtRBP47B
gi|110741040|dbj|BAE98614.1| putative nuclear acid binding protein [Arabidopsis thaliana]
gi|111074446|gb|ABH04596.1| At3g19130 [Arabidopsis thaliana]
gi|332642675|gb|AEE76196.1| RNA-binding protein 47B [Arabidopsis thaliana]
Length = 435
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 121/200 (60%), Gaps = 55/200 (27%)
Query: 8 DITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L ETFS AKV IDSNTG +KGYGFVRFGDENERSRA+ EMNG
Sbjct: 212 DVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSN 271
Query: 56 ------------------------------------------SDGKSNNATIFVGALDSN 73
SDG+S NATIFVG +D +
Sbjct: 272 RQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPD 331
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V D+DLR+ FS FGE++SVKIPVGKGCGFVQFA+RK AE A++ L GT IGK TVRLSWG
Sbjct: 332 VIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWG 391
Query: 134 HNPGNKQWRGDHINHWNGAH 153
+P NKQWRGD WNG +
Sbjct: 392 RSP-NKQWRGDSGQQWNGGY 410
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L FSH GE+ SVK+ K G GFV+F +R AE LQ
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 118 LQGTAI--GKQTVRLSW 132
G+ + Q R++W
Sbjct: 169 YSGSVMPNSDQPFRINW 185
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 30/142 (21%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA--------------- 63
S KV + T ++GYGFV F + +GS +++
Sbjct: 135 SSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKR 194
Query: 64 --------TIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANR 108
++FVG L +V+D L E FS + + S K+ + KG GFV+F +
Sbjct: 195 AVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ AL ++ G + +R+
Sbjct: 255 NERSRALTEMNGAYCSNRQMRV 276
>gi|21618243|gb|AAM67293.1| nuclear acid binding protein, putative [Arabidopsis thaliana]
Length = 392
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 121/200 (60%), Gaps = 55/200 (27%)
Query: 8 DITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L ETFS AKV IDSNTG +KGYGFVRFGDENERSRA+ EMNG
Sbjct: 169 DVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSN 228
Query: 56 ------------------------------------------SDGKSNNATIFVGALDSN 73
SDG+S NATIFVG +D +
Sbjct: 229 RQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPD 288
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V D+DLR+ FS FGE++SVKIPVGKGCGFVQFA+RK AE A++ L GT IGK TVRLSWG
Sbjct: 289 VIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWG 348
Query: 134 HNPGNKQWRGDHINHWNGAH 153
+P NKQWRGD WNG +
Sbjct: 349 RSP-NKQWRGDSGQQWNGGY 367
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L FSH GE+ SVK+ K G GFV+F +R AE LQ
Sbjct: 66 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 125
Query: 118 LQGTAI--GKQTVRLSW 132
G+ + Q R++W
Sbjct: 126 YSGSVMPNSDQPFRINW 142
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 30/142 (21%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA--------------- 63
S KV + T ++GYGFV F + +GS +++
Sbjct: 92 SSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKR 151
Query: 64 --------TIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANR 108
++FVG L +V+D L E FS + + S K+ + KG GFV+F +
Sbjct: 152 AVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 211
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ AL ++ G + +R+
Sbjct: 212 NERSRALTEMNGAYCSNRQMRV 233
>gi|297834824|ref|XP_002885294.1| RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata]
gi|297331134|gb|EFH61553.1| RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata]
Length = 435
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/200 (51%), Positives = 122/200 (61%), Gaps = 55/200 (27%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+++L ETF AKV IDSNTG +KGYGFVRFGDENERSRA+ EMNG
Sbjct: 212 DVTDALLHETFFDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSN 271
Query: 56 ------------------------------------------SDGKSNNATIFVGALDSN 73
SDG+S NATIFVG +D++
Sbjct: 272 RQMRVGVATPKRAIANQQQHSSQALILAGGHGANGSMAHGSQSDGESTNATIFVGGIDAD 331
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V+D+DLR+ FS FGE++SVKIPVGKGCGFVQFA RK AE A++ L GT IGK TVRLSWG
Sbjct: 332 VTDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFAERKSAEDAIETLNGTVIGKNTVRLSWG 391
Query: 134 HNPGNKQWRGDHINHWNGAH 153
+P NKQWRGD WNG +
Sbjct: 392 RSP-NKQWRGDSGQQWNGGY 410
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 31 HTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
H + + + + ++ + + +G D K T++VG L + + L FSH GE+
Sbjct: 80 HPQLHQYGSYQQHQQQHKPLDRGSGDDVK----TLWVGDLLHWMDETYLHSCFSHTGEVS 135
Query: 91 SVKIPVGK------GCGFVQFANRKDAEVALQKLQGTAI--GKQTVRLSWG 133
SVK+ K G GF++F +R AE LQ G+ + Q R++W
Sbjct: 136 SVKVIRNKLTSQSEGYGFIEFLSRAAAEEVLQNYSGSLMPNSDQPFRINWA 186
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 30/142 (21%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA--------------- 63
S KV + T ++GYGF+ F + +GS +++
Sbjct: 135 SSVKVIRNKLTSQSEGYGFIEFLSRAAAEEVLQNYSGSLMPNSDQPFRINWASFSTGEKR 194
Query: 64 --------TIFVGALDSNVSDKDLRE-LFSHFGEILSVKIPV------GKGCGFVQFANR 108
+IFVG L +V+D L E F + + S K+ + KG GFV+F +
Sbjct: 195 AVENGPDLSIFVGDLSPDVTDALLHETFFDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ AL ++ G + +R+
Sbjct: 255 NERSRALTEMNGAYCSNRQMRV 276
>gi|15220233|ref|NP_175180.1| RNA-binding protein 47C [Arabidopsis thaliana]
gi|75337807|sp|Q9SX79.1|RB47C_ARATH RecName: Full=Polyadenylate-binding protein RBP47C;
Short=Poly(A)-binding protein RBP47C; AltName:
Full=RNA-binding protein 47C; Short=AtRBP47C
gi|5668812|gb|AAD46038.1|AC007519_23 Contains 3 PF|00076 RNA recognition motif domains. ESTs gb|R30092,
gb|R30093, gb|AA394338, gb|N65719 and gb|AA597577 come
from this gene [Arabidopsis thaliana]
gi|12744993|gb|AAK06876.1|AF344325_1 putative DNA binding protein [Arabidopsis thaliana]
gi|14334552|gb|AAK59684.1| putative DNA binding protein [Arabidopsis thaliana]
gi|17065624|gb|AAL33806.1| putative DNA binding protein [Arabidopsis thaliana]
gi|332194053|gb|AEE32174.1| RNA-binding protein 47C [Arabidopsis thaliana]
Length = 432
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 120/191 (62%), Gaps = 42/191 (21%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+++++L ETFS AKV +D+NTG +KGYGFVRFGDENER++AM EMNG
Sbjct: 206 PDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCS 265
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
+G N TIFVG LDS+V+D+DL++ F+
Sbjct: 266 SRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFN 325
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
FGEI+SVKIPVGKGCGFVQF NR +AE AL+KL GT IGKQTVRLSWG NP NKQ R
Sbjct: 326 EFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDK 385
Query: 145 HINHWNGAHYG 155
+ N W +YG
Sbjct: 386 YGNQWVDPYYG 396
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 30/140 (21%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------D 57
KV + N G ++GYGFV F + + + E NG+ +
Sbjct: 132 VKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLE 191
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKD 110
+ +IFVG L +VSD L E FS + + + K+ + KG GFV+F + +
Sbjct: 192 NNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENE 251
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 252 RTKAMTEMNGVKCSSRAMRI 271
>gi|356521484|ref|XP_003529385.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 431
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/202 (50%), Positives = 122/202 (60%), Gaps = 58/202 (28%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+++LQETF+ AKV IDSNTG +KGYGFVRFGDENER+RAM EMNG
Sbjct: 205 DVTDAMLQETFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSS 264
Query: 56 ------------------------------------------SDGKSNNATIFVGALDSN 73
S+G NN TIFVG LDS+
Sbjct: 265 RPMRIGVATPKKTYGYQQQYSSQAVLLAGGHAANGAVAQGSHSEGDLNNTTIFVGGLDSD 324
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
SD+DLR+ F FGE++SVKIPVGKGCGFVQFA+RK+AE A+ L GT IGKQTVRLSWG
Sbjct: 325 TSDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWG 384
Query: 134 HNPGNKQWRGDHINHWNGAHYG 155
+PGNK WR D NG ++G
Sbjct: 385 RSPGNKHWRSDS----NGGYFG 402
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 30/140 (21%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-------------------DGKSN 61
AKV + TG ++GYGFV F + + NG+ + +S+
Sbjct: 130 AKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRSS 189
Query: 62 NAT----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKD 110
+AT IFVG L +V+D L+E F+ + I K+ + KG GFV+F + +
Sbjct: 190 DATSDLSIFVGDLAIDVTDAMLQETFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENE 249
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 250 RTRAMTEMNGVYCSSRPMRI 269
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE++S K+ K G GFV+F +R AE LQ
Sbjct: 102 TVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 161
Query: 118 LQGTAIGK--QTVRLSW 132
GT + Q RL+W
Sbjct: 162 YNGTMMPNTDQAFRLNW 178
>gi|357465449|ref|XP_003603009.1| RNA-binding protein [Medicago truncatula]
gi|355492057|gb|AES73260.1| RNA-binding protein [Medicago truncatula]
Length = 420
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 122/191 (63%), Gaps = 41/191 (21%)
Query: 6 VSDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+++L ETFS AKV D+NTG +KGYGFVRFGD+ ERS+A+ EMNG
Sbjct: 195 AADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFC 254
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
SD S N TIFVG LD + + +DLR+ FS
Sbjct: 255 SSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQ 314
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
+GEI+SVKIPVGKGCGFVQFANR +AE ALQKL GT +GKQTVRLSWG NP NKQ+R +
Sbjct: 315 YGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQFRSEF 374
Query: 146 INHWNG-AHYG 155
+ WNG A+YG
Sbjct: 375 GSPWNGPAYYG 385
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEV 113
++N T++VG L + + L F+ GEI S+K+ K G GFV+F + AE
Sbjct: 90 ADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEK 149
Query: 114 ALQKLQGTAIG--KQTVRLSWG 133
LQ G + +Q RL+W
Sbjct: 150 VLQTYAGMLMPNTEQPFRLNWA 171
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 31/145 (21%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRA------MIEMN--------------G 55
E FS KV + T T+GYGFV F + M+ N G
Sbjct: 118 EIFS-IKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTEQPFRLNWATFSTG 176
Query: 56 SDGKSNNA---TIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQF 105
+S+N +IFVG L ++V+D L E FS + + + K+ KG GFV+F
Sbjct: 177 DHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRF 236
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRL 130
+ + AL ++ G + +R+
Sbjct: 237 GDDGERSKALNEMNGVFCSSRAMRI 261
>gi|388505308|gb|AFK40720.1| unknown [Medicago truncatula]
Length = 454
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 119/192 (61%), Gaps = 55/192 (28%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+++LQETF+ AKV IDSNTG +KGYGFVRFGDE+ER+RAM EMNG
Sbjct: 224 DVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSS 283
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
S+G SNN TIFVG LDS
Sbjct: 284 RPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDS 343
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
++SD+DLR+ F FG+++SVKIPVGKGCGFVQ A+RK+AE A+Q L GT IGKQTVRLSW
Sbjct: 344 DISDEDLRQPFLQFGDVISVKIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSW 403
Query: 133 GHNPGNKQWRGD 144
G +PGNK WR D
Sbjct: 404 GRSPGNKHWRND 415
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 34/146 (23%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------- 56
+ AKV + TG ++GYGFV F + + NG+
Sbjct: 143 ASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGG 202
Query: 57 -DGKSNNAT----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQ 104
+ +S+ AT +FVG L +V+D L+E F S F I K+ + KG GFV+
Sbjct: 203 GERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVR 262
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRL 130
F + + A+ ++ G + +R+
Sbjct: 263 FGDESERTRAMTEMNGVYCSSRPMRV 288
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
TI++G L + + L F+H GE+ S K+ K G GFV+F R AE LQ
Sbjct: 117 TIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQN 176
Query: 118 LQGTAIGK--QTVRLSW 132
GT + Q RL+W
Sbjct: 177 FNGTMMPNTDQAFRLNW 193
>gi|2708532|gb|AAB92518.1| putative RNA binding protein [Nicotiana tabacum]
Length = 482
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 124/203 (61%), Gaps = 53/203 (26%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+++L++TF+ AKV +D+NTGH+KGYGFVRFGDE+ERSRAM EMNG
Sbjct: 239 ASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYC 298
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
SDG ++N TIFVG LDS
Sbjct: 299 SSRAMRIGVATPKKPSAQQQYSSQAVILSGGYASNGAATHGSQSDGDASNTTIFVGGLDS 358
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+V+D++LR+ F+ FGE++SVKIP GKGCGFVQF++R A+ A+QKL G IGKQ VRLSW
Sbjct: 359 DVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSW 418
Query: 133 GHNPGNKQWRGDHINHWNGAHYG 155
G +P NKQ R D + WNG + G
Sbjct: 419 GRSPANKQMRADSGSQWNGGYNG 441
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 35/157 (22%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
+ S L FS+A K+ + TG ++ YGFV F + + NG
Sbjct: 149 MDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAE 208
Query: 56 ----------SDGKSNNAT-----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV--- 96
S G+ T IFVG L S+V+D LR+ F S + + K+ V
Sbjct: 209 QPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDAN 268
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
KG GFV+F + + A+ ++ G + +R+
Sbjct: 269 TGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRI 305
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC------GFVQFANRKDAEVA 114
+N TI++G L + + L FS GE++SVKI K GFV+F AE
Sbjct: 136 DNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKV 195
Query: 115 LQKLQGTAI--GKQTVRLSW-GHNPGNKQ 140
LQ GT + +Q RL+W G + G K+
Sbjct: 196 LQSYNGTMMPNAEQPFRLNWAGFSTGEKR 224
>gi|356500047|ref|XP_003518846.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 431
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 118/191 (61%), Gaps = 54/191 (28%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+++LQ+TF+ AKV IDSNTG +KGYGFVRFGDENER+RAM EMNG
Sbjct: 204 DVTDAMLQDTFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSS 263
Query: 56 ------------------------------------------SDGKSNNATIFVGALDSN 73
S+G NN TIFVG LDS+
Sbjct: 264 RPMRIGVATPKKTYGFQQQYSSQAVVLAGGHSANGAVAQGSHSEGDINNTTIFVGGLDSD 323
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
SD+DLR+ F FGE++SVKIPVGKGCGFVQFA+RK+AE A+Q L GT IGKQTVRLSWG
Sbjct: 324 TSDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQGLNGTVIGKQTVRLSWG 383
Query: 134 HNPGNKQWRGD 144
+PGNK WR D
Sbjct: 384 RSPGNKHWRSD 394
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 30/140 (21%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-------------------DGKSN 61
AKV + TG ++GYGFV F + + NG+ + +S+
Sbjct: 129 AKVIRNKQTGQSEGYGFVEFYSRGTAEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRSS 188
Query: 62 NAT----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKD 110
+AT IFVG L +V+D L++ F+ + I K+ + KG GFV+F + +
Sbjct: 189 DATSDLSIFVGDLAIDVTDAMLQDTFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENE 248
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 249 RTRAMTEMNGVYCSSRPMRI 268
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE++S K+ K G GFV+F +R AE LQ
Sbjct: 101 TVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRGTAEKVLQN 160
Query: 118 LQGTAIGK--QTVRLSWG 133
GT + Q RL+W
Sbjct: 161 YNGTMMPNTDQAFRLNWA 178
>gi|75334879|sp|Q9LEB3.1|RBP47_NICPL RecName: Full=Polyadenylate-binding protein RBP47;
Short=Poly(A)-binding protein RBP47; AltName:
Full=RNA-binding protein 47; Short=NplRBP47
gi|9663769|emb|CAC01238.1| RNA Binding Protein 47 [Nicotiana plumbaginifolia]
Length = 428
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 123/203 (60%), Gaps = 53/203 (26%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+++L++TF+ AKV +D+NTGH+KGYGFVRFGDE+ERSRAM EMNG
Sbjct: 185 ASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYC 244
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
SDG S+N TIFVG LDS
Sbjct: 245 SSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDS 304
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
V+D++LR+ F+ FGE++SVKIP GKGCGFVQF++R A+ A+QKL G IGKQ VRLSW
Sbjct: 305 EVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSW 364
Query: 133 GHNPGNKQWRGDHINHWNGAHYG 155
G +P NKQ R D + WNG + G
Sbjct: 365 GRSPANKQMRTDSGSQWNGGYNG 387
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 35/157 (22%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
+ S L FS+A K+ + TG ++ YGFV F + + NG
Sbjct: 95 MDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTE 154
Query: 56 ----------SDGKSNNAT-----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV--- 96
S G+ T IFVG L S+V+D LR+ F S + + K+ V
Sbjct: 155 QPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDAN 214
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
KG GFV+F + + A+ ++ G + +R+
Sbjct: 215 TGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRI 251
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC------GFVQFANRKDAEVA 114
+N TI++G L + + L FS GE++SVKI K GFV+F AE
Sbjct: 82 DNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKV 141
Query: 115 LQKLQGTAIG--KQTVRLSW-GHNPGNKQ 140
LQ GT + +Q RL+W G + G K+
Sbjct: 142 LQSYNGTMMPNTEQPFRLNWAGFSTGEKR 170
>gi|222641726|gb|EEE69858.1| hypothetical protein OsJ_29658 [Oryza sativa Japonica Group]
Length = 310
Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/186 (52%), Positives = 115/186 (61%), Gaps = 37/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+ ++ L ETFS+ AKV ID+NTG +KGYGFVRFGD+NE++ AM EMNG
Sbjct: 85 ASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYC 144
Query: 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
SDG N T+FVG LD NVS+ DLR+ FS +GE
Sbjct: 145 STRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGE 204
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
I SVKIPVGK CGFVQF RK+AE ALQ L G+ IGKQTVRLSWG NP NKQ R D+ +
Sbjct: 205 ISSVKIPVGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQ 264
Query: 149 WNGAHY 154
WN Y
Sbjct: 265 WNNGMY 270
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + G D +S+
Sbjct: 14 KVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDI 73
Query: 63 A---TIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L S+V+D L E FS + + K+ + KG GFV+F + +
Sbjct: 74 ASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKT 133
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 134 HAMTEMNGVYCSTRPMRI 151
>gi|82621116|gb|ABB86246.1| DNA-binding protein-like [Solanum tuberosum]
Length = 423
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 121/198 (61%), Gaps = 48/198 (24%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+++L++TFS AKV IDSNTG +KGYGFVRF DE+ERSRAM EMNG
Sbjct: 186 ASDVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFDDESERSRAMTEMNGIYC 245
Query: 56 --------------------------------------SDGKSNNATIFVGALDSNVSDK 77
+D +N T+FVG LDS+V+D+
Sbjct: 246 SSRAMRIGVATPKKPSAMQQYSSQGGHASNGAATQTSQTDSDLSNTTVFVGGLDSDVTDE 305
Query: 78 DLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
+LR+ FS FG ++SVKIP GKGCGFVQF+ R AE A++KL GT IG QTVRLSWG NP
Sbjct: 306 ELRQSFSQFGNVVSVKIPAGKGCGFVQFSERSAAEDAIEKLNGTVIGTQTVRLSWGRNPA 365
Query: 138 NKQWRGDHINHWNGAHYG 155
NKQ+R D + WNG +YG
Sbjct: 366 NKQFRTDSGSQWNGGYYG 383
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC------GFVQFANRKD 110
+G +N TI++G L + + L F+ GE++SVK+ K GF++F +
Sbjct: 73 NGSEDNRTIWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQTGQSERYGFIEFNTHEA 132
Query: 111 AEVALQKLQGTAI--GKQTVRLSW 132
AE LQ GT + +Q RL+W
Sbjct: 133 AEKVLQSYNGTMMPNAEQPFRLNW 156
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 35/144 (24%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------- 56
KV + TG ++ YGF+ F + + NG+
Sbjct: 109 KVIRNKQTGQSERYGFIEFNTHEAAEKVLQSYNGTMMPNAEQPFRLNWSAFSTGEKRADV 168
Query: 57 ---DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFA 106
G ++ +IFVG L S+V+D LR+ F S + + K+ + KG GFV+F
Sbjct: 169 GAAAGSGSDLSIFVGDLASDVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFD 228
Query: 107 NRKDAEVALQKLQGTAIGKQTVRL 130
+ + A+ ++ G + +R+
Sbjct: 229 DESERSRAMTEMNGIYCSSRAMRI 252
>gi|50725189|dbj|BAD33940.1| putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|51535291|dbj|BAD38554.1| putative nucleic acid binding protein [Oryza sativa Japonica Group]
Length = 316
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/186 (52%), Positives = 115/186 (61%), Gaps = 37/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+ ++ L ETFS+ AKV ID+NTG +KGYGFVRFGD+NE++ AM EMNG
Sbjct: 91 ASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYC 150
Query: 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
SDG N T+FVG LD NVS+ DLR+ FS +GE
Sbjct: 151 STRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGE 210
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
I SVKIPVGK CGFVQF RK+AE ALQ L G+ IGKQTVRLSWG NP NKQ R D+ +
Sbjct: 211 ISSVKIPVGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQ 270
Query: 149 WNGAHY 154
WN Y
Sbjct: 271 WNNGMY 276
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + G D +S+
Sbjct: 20 KVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDI 79
Query: 63 A---TIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L S+V+D L E FS + + K+ + KG GFV+F + +
Sbjct: 80 ASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKT 139
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 140 HAMTEMNGVYCSTRPMRI 157
>gi|297846966|ref|XP_002891364.1| ATRBP47C [Arabidopsis lyrata subsp. lyrata]
gi|297337206|gb|EFH67623.1| ATRBP47C [Arabidopsis lyrata subsp. lyrata]
Length = 443
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/185 (52%), Positives = 115/185 (62%), Gaps = 42/185 (22%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+++++L ETFS AKV ID+NTG +KGYGFVRFGDENER++AM EMNG
Sbjct: 214 PDVSDTLLHETFSEKYPSVKAAKVVIDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCS 273
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
+G + N TIFVG LDS+V+D DLR+ FS
Sbjct: 274 SRAMRIGPATPRKTTGYQQQGGYMPNGALTRPEGDTLNTTIFVGGLDSSVTDDDLRQPFS 333
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
FGEI+SVKIPVGKGCGFVQF NR AE AL+KL GT IGKQTVRLSWG N NKQ R
Sbjct: 334 EFGEIVSVKIPVGKGCGFVQFVNRPSAEEALEKLNGTVIGKQTVRLSWGRNQANKQPRDK 393
Query: 145 HINHW 149
+ N W
Sbjct: 394 YGNQW 398
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 30/140 (21%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------D 57
KV + + G ++GYGFV F + + + E NG+ +
Sbjct: 140 VKVIRNKHNGLSEGYGFVEFDSHDVADKVLQEFNGTTMPDTEQPFRLNWASFSTGEKRLE 199
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKD 110
+ +IFVG L +VSD L E FS + + + K+ + KG GFV+F + +
Sbjct: 200 NNGPDLSIFVGDLAPDVSDTLLHETFSEKYPSVKAAKVVIDANTGRSKGYGFVRFGDENE 259
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 260 RTKAMTEMNGVKCSSRAMRI 279
>gi|215765810|dbj|BAG87507.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 345
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/186 (52%), Positives = 115/186 (61%), Gaps = 37/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+ ++ L ETFS+ AKV ID+NTG +KGYGFVRFGD+NE++ AM EMNG
Sbjct: 120 ASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYC 179
Query: 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
SDG N T+FVG LD NVS+ DLR+ FS +GE
Sbjct: 180 STRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGE 239
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
I SVKIPVGK CGFVQF RK+AE ALQ L G+ IGKQTVRLSWG NP NKQ R D+ +
Sbjct: 240 ISSVKIPVGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQ 299
Query: 149 WNGAHY 154
WN Y
Sbjct: 300 WNNGMY 305
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + G D +S+
Sbjct: 49 KVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDI 108
Query: 63 A---TIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L S+V+D L E FS + + K+ + KG GFV+F + +
Sbjct: 109 ASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKT 168
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 169 HAMTEMNGVYCSTRPMRI 186
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVAL 115
N TI+VG L + + L F + GE++++K+ K G GFV+F + AE L
Sbjct: 18 NKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVL 77
Query: 116 QKLQGTAIGK--QTVRLSW 132
+ G + Q R++W
Sbjct: 78 EGFAGHIMPNTDQPFRINW 96
>gi|115479619|ref|NP_001063403.1| Os09g0462700 [Oryza sativa Japonica Group]
gi|113631636|dbj|BAF25317.1| Os09g0462700, partial [Oryza sativa Japonica Group]
Length = 441
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/186 (52%), Positives = 115/186 (61%), Gaps = 37/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+ ++ L ETFS+ AKV ID+NTG +KGYGFVRFGD+NE++ AM EMNG
Sbjct: 216 ASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYC 275
Query: 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
SDG N T+FVG LD NVS+ DLR+ FS +GE
Sbjct: 276 STRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGE 335
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
I SVKIPVGK CGFVQF RK+AE ALQ L G+ IGKQTVRLSWG NP NKQ R D+ +
Sbjct: 336 ISSVKIPVGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQ 395
Query: 149 WNGAHY 154
WN Y
Sbjct: 396 WNNGMY 401
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + G D +S+
Sbjct: 145 KVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDI 204
Query: 63 A---TIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L S+V+D L E FS + + K+ + KG GFV+F + +
Sbjct: 205 ASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKT 264
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 265 HAMTEMNGVYCSTRPMRI 282
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G+ N TI+VG L + + L F + GE++++K+ K G GFV+F + A
Sbjct: 110 GQEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAA 169
Query: 112 EVALQKLQGTAIGK--QTVRLSW 132
E L+ G + Q R++W
Sbjct: 170 EKVLEGFAGHIMPNTDQPFRINW 192
>gi|350536139|ref|NP_001234487.1| DNA-binding protein [Solanum lycopersicum]
gi|40804404|gb|AAR91698.1| DNA-binding protein [Solanum lycopersicum]
Length = 428
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 120/203 (59%), Gaps = 53/203 (26%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+++L++TFS AKV IDSNTG +KGYGFVRF DE+ERSRAM EMNG
Sbjct: 186 ASDVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFDDESERSRAMTEMNGIYC 245
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
+D +N T+FVG LDS
Sbjct: 246 SSRAMRIGVATPKKPSPMQQYFPQAVILAGGHASNGAATQTSQTDSDLSNTTVFVGGLDS 305
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
V+D++LR+ FS FG ++SVKIP GKGCGFVQF+ R AE A++KL GT IG QTVRLSW
Sbjct: 306 EVTDEELRQSFSQFGNVVSVKIPAGKGCGFVQFSERSAAEDAIEKLNGTVIGAQTVRLSW 365
Query: 133 GHNPGNKQWRGDHINHWNGAHYG 155
G NP NKQ+R D + WNG +YG
Sbjct: 366 GRNPANKQFRTDSGSQWNGGYYG 388
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 35/144 (24%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------- 56
KV + TG ++ YGF+ F + + NG+
Sbjct: 109 KVIRNKQTGQSERYGFIEFNTHEAAEKVLQSYNGTMMPNAEQPFRLNWSAFSSGEKRADV 168
Query: 57 ---DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFA 106
G ++ +IFVG L S+V+D LR+ F S + + K+ + KG GFV+F
Sbjct: 169 GAGAGSGSDLSIFVGDLASDVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFD 228
Query: 107 NRKDAEVALQKLQGTAIGKQTVRL 130
+ + A+ ++ G + +R+
Sbjct: 229 DESERSRAMTEMNGIYCSSRAMRI 252
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC------GFVQFANRKDAEVA 114
+N TI++G L + + L F+ GE++SVK+ K GF++F + AE
Sbjct: 77 DNRTIWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQTGQSERYGFIEFNTHEAAEKV 136
Query: 115 LQKLQGTAI--GKQTVRLSW 132
LQ GT + +Q RL+W
Sbjct: 137 LQSYNGTMMPNAEQPFRLNW 156
>gi|356519168|ref|XP_003528246.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 410
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 121/194 (62%), Gaps = 44/194 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+S+L ETFS AKV D+NTG +KGYGFVRFGD++ERS+AM EMNG
Sbjct: 179 AADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDDERSQAMTEMNGVYC 238
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
S+ S N TIFVG LDSNV+ +DL++ FS
Sbjct: 239 SSRPMRIGAATPRKTSGYQQGSQSNGISSQSEADSTNTTIFVGGLDSNVTAEDLKQPFSQ 298
Query: 86 FGEILSVKIPVGKGCGFVQFANR----KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQW 141
+GEI+SVKIPVGKGCGF +R K+AE ALQKL GT IGKQ VRLSWG NP NKQ+
Sbjct: 299 YGEIVSVKIPVGKGCGFTICNSRSPGPKNAEEALQKLNGTTIGKQMVRLSWGRNPANKQF 358
Query: 142 RGDHINHWNGAHYG 155
R D N W+GA+YG
Sbjct: 359 RADFGNAWSGAYYG 372
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 29/142 (20%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDG 58
S KV + TG ++GYGFV F + + G D
Sbjct: 104 ISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFGTGDK 163
Query: 59 KSNNA---TIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANR 108
+S+N +IFVG L ++V+D L E FS+ + + + K+ KG GFV+F +
Sbjct: 164 RSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDD 223
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 224 DERSQAMTEMNGVYCSSRPMRI 245
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEV 113
+ N T++VG L + + L F+ GEI S+K+ + +G GFV+F + AE
Sbjct: 75 AENKTVWVGDLHHWMDENYLHRCFASNGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEK 134
Query: 114 ALQKLQGTAIG--KQTVRLSWG 133
LQ G + +Q RL+W
Sbjct: 135 VLQNYAGILMPNTEQPFRLNWA 156
>gi|357475467|ref|XP_003608019.1| RNA Binding Protein [Medicago truncatula]
gi|355509074|gb|AES90216.1| RNA Binding Protein [Medicago truncatula]
Length = 454
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 118/192 (61%), Gaps = 55/192 (28%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+++LQETF+ AKV IDSNTG +KGYGFVRFGDE+ER+RAM EMNG
Sbjct: 224 DVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSS 283
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
S+G SNN TIFVG LDS
Sbjct: 284 RPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDS 343
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
++SD+DLR+ F FG+++SVKIPVGKGCGFVQ A+RK+AE A+Q L GT IGKQTVRLSW
Sbjct: 344 DISDEDLRQPFLQFGDVISVKIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSW 403
Query: 133 GHNPGNKQWRGD 144
G +PGNK R D
Sbjct: 404 GRSPGNKHGRND 415
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 34/146 (23%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------- 56
+ AKV + TG ++GYGFV F + + NG+
Sbjct: 143 ASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGG 202
Query: 57 -DGKSNNAT----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQ 104
+ +S+ AT +FVG L +V+D L+E F S F I K+ + KG GFV+
Sbjct: 203 GERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVR 262
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRL 130
F + + A+ ++ G + +R+
Sbjct: 263 FGDESERTRAMTEMNGVYCSSRPMRV 288
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
TI++G L + + L F+H GE+ S K+ K G GFV+F R AE LQ
Sbjct: 117 TIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQN 176
Query: 118 LQGTAIGK--QTVRLSW 132
GT + Q RL+W
Sbjct: 177 FNGTMMPNTDQAFRLNW 193
>gi|218202287|gb|EEC84714.1| hypothetical protein OsI_31675 [Oryza sativa Indica Group]
Length = 377
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 115/186 (61%), Gaps = 37/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+ ++ L ETFS+ AKV ID+NTG +KGYGFVRFGD+NE++ AM EMNG
Sbjct: 152 ASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYC 211
Query: 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
SDG N T+FVG LD NVS+ DLR+ FS +GE
Sbjct: 212 STRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGE 271
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
I SVKIPVGK CGFVQF RK+AE ALQ L G+ IGKQTVRLSWG NP NKQ R D+ +
Sbjct: 272 ISSVKIPVGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQ 331
Query: 149 WNGAHY 154
WN +
Sbjct: 332 WNNGMF 337
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + G D +S+
Sbjct: 81 KVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDI 140
Query: 63 A---TIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L S+V+D L E FS + + K+ + KG GFV+F + +
Sbjct: 141 ASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKT 200
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 201 HAMTEMNGVYCSTRPMRI 218
>gi|326495566|dbj|BAJ85879.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 479
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 114/186 (61%), Gaps = 37/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+ ++ L ETFS AKV ID+NTG +KGYGFVRFGD++E++ AM EMNG
Sbjct: 254 ASDVNDTALLETFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTNAMTEMNGVYC 313
Query: 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
SDG N T+FVG LD NVS+ DL++ FS +GE
Sbjct: 314 STRPMRIGPATPRKSSGTSGSTGSSARSDGDLTNTTVFVGGLDPNVSEDDLKQTFSQYGE 373
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
I SVKIPVGK CGFVQF RK+AE ALQ L G+ IGKQTVRLSWG NP NKQ R D+ N
Sbjct: 374 ISSVKIPVGKQCGFVQFLQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGNQ 433
Query: 149 WNGAHY 154
WN Y
Sbjct: 434 WNNGMY 439
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + G D +S+
Sbjct: 183 KVIRNKQTGQSEGYGFVEFYSHAAAEKVLDGFAGHIMPNTDQPFRINWASFSMGDRRSDI 242
Query: 63 A---TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L S+V+D L E F S + + K+ + KG GFV+F + +
Sbjct: 243 ASDHSIFVGDLASDVNDTALLETFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKT 302
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 303 NAMTEMNGVYCSTRPMRI 320
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G+ N TI+VG L + + L F + GE++++K+ K G GFV+F + A
Sbjct: 148 GQEENKTIWVGDLHYWMDENYLHTCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAA 207
Query: 112 EVALQKLQGTAIGK--QTVRLSW 132
E L G + Q R++W
Sbjct: 208 EKVLDGFAGHIMPNTDQPFRINW 230
>gi|82621158|gb|ABB86267.1| DNA binding protein ACBF-like [Solanum tuberosum]
Length = 372
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 123/203 (60%), Gaps = 55/203 (27%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+++L++TF+ AKV +D+NTGH+KGYGFVRFGDE+ERSRAM EMNG
Sbjct: 134 ASDVTDTMLRDTFASRFPSVKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGIYC 193
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
SDG S+N TIFVG LDS
Sbjct: 194 SSRPMRVGVATPKKPSAQQQFSSQAVILSGGYASNGSATHGSQSDGDSSNTTIFVGGLDS 253
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+V+D++LR+ F+ FGE++SVKIP GKGCGFVQF++R A+ A+QKL G IGKQ VRLSW
Sbjct: 254 DVTDEELRQSFTQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSW 313
Query: 133 GHNPGNKQWRGDHINHWNGAHYG 155
G +P NKQ R D N G +YG
Sbjct: 314 GRSPANKQMRTDSGN--GGGYYG 334
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC------GFVQFANRKDAEVA 114
+N TI++G L + + L FSH GE++SVKI K GFV+F AE
Sbjct: 31 DNKTIWIGDLQQWMDENYLHSCFSHAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKV 90
Query: 115 LQKLQGTAI--GKQTVRLSWG 133
LQ GT + +Q RL+W
Sbjct: 91 LQSYNGTMMPNAEQPFRLNWA 111
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 35/152 (23%)
Query: 14 LQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------ 55
L FS A K+ + TG ++ YGFV F + + NG
Sbjct: 49 LHSCFSHAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRL 108
Query: 56 -----SDGKSNNAT-----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GK 98
S G+ T IFVG L S+V+D LR+ F S F + K+ V K
Sbjct: 109 NWAAFSAGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRFPSVKGAKVVVDANTGHSK 168
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
G GFV+F + + A+ ++ G + +R+
Sbjct: 169 GYGFVRFGDESERSRAMTEMNGIYCSSRPMRV 200
>gi|357158812|ref|XP_003578248.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 431
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 113/186 (60%), Gaps = 37/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+ ++ L E FS AKV ID+NTG +KGYGFVRFGD++E++ AM EMNG
Sbjct: 205 ASDVNDATLLEIFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTHAMTEMNGVYC 264
Query: 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
SDG N T+FVG LD NVS+ DLR+ FS +GE
Sbjct: 265 STRPMRIGPATPRKSSGNSGSTGSSARSDGDLTNTTVFVGGLDPNVSEDDLRQSFSQYGE 324
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
I SVKIPVGK CGFVQF RK+AE ALQ L G+ IGKQTVRLSWG NP NKQ R D+ N
Sbjct: 325 ISSVKIPVGKQCGFVQFLQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGNQ 384
Query: 149 WNGAHY 154
WN Y
Sbjct: 385 WNNGMY 390
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + G D +S+
Sbjct: 134 KVIRNKQTGQSEGYGFVEFYSHAAAEKVLDGFAGHIMPNTDQPFRINWASFSMGDRRSDI 193
Query: 63 AT---IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A+ IFVG L S+V+D L E+F S + + K+ + KG GFV+F + +
Sbjct: 194 ASDHSIFVGDLASDVNDATLLEIFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKT 253
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 254 HAMTEMNGVYCSTRPMRI 271
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G+ N TI+VG L + + L F + GE++++K+ K G GFV+F + A
Sbjct: 99 GQEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAA 158
Query: 112 EVALQKLQGTAIGK--QTVRLSWG 133
E L G + Q R++W
Sbjct: 159 EKVLDGFAGHIMPNTDQPFRINWA 182
>gi|194697962|gb|ACF83065.1| unknown [Zea mays]
gi|414885795|tpg|DAA61809.1| TPA: hypothetical protein ZEAMMB73_995180 [Zea mays]
Length = 320
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/189 (51%), Positives = 119/189 (62%), Gaps = 40/189 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+ ++ L E FS AKV ID+NTG +KGYGFVRFGD++E+++AM EMNG
Sbjct: 91 ASDVNDATLLEAFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTQAMTEMNGVYC 150
Query: 56 ---------------------------SDGKS-NNATIFVGALDSNVSDKDLRELFSHFG 87
SDG N T+FVG LD NVS++DLR+ FS +G
Sbjct: 151 SSRPMRIGPATPRKSSGTSGSNGSAARSDGGDLTNTTVFVGGLDPNVSEEDLRQTFSQYG 210
Query: 88 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN 147
EI SVKIP+GK CGFVQFA RK+AE ALQ L G+ IGKQ VRLSWG NP NKQ+RGD+ N
Sbjct: 211 EISSVKIPIGKQCGFVQFAQRKNAEDALQGLNGSTIGKQNVRLSWGRNPANKQFRGDNGN 270
Query: 148 HWN--GAHY 154
WN G +Y
Sbjct: 271 QWNNGGMYY 279
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + +G D +S++
Sbjct: 20 KVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFSGHIMPNTDQPFRLNWASFSMGDRRSDS 79
Query: 63 A---TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L S+V+D L E F S + + K+ + KG GFV+F + +
Sbjct: 80 ASDHSIFVGDLASDVNDATLLEAFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKT 139
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 140 QAMTEMNGVYCSSRPMRI 157
>gi|226492692|ref|NP_001144988.1| uncharacterized protein LOC100278143 [Zea mays]
gi|195649537|gb|ACG44236.1| hypothetical protein [Zea mays]
Length = 436
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 119/190 (62%), Gaps = 40/190 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+ ++ L E FS AKV ID+NTG +KGYGFVRFGD++E+++AM EMNG
Sbjct: 207 ASDVNDATLLEAFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTQAMTEMNGVYC 266
Query: 56 ---------------------------SDGKS-NNATIFVGALDSNVSDKDLRELFSHFG 87
SDG N T+FVG LD NVS++DLR+ FS +G
Sbjct: 267 SSRPMRIGPATPRKSSGTSGSNGSAARSDGGDLTNTTVFVGGLDPNVSEEDLRQTFSQYG 326
Query: 88 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN 147
EI SVKIP+GK CGFVQFA RK+AE ALQ L G+ IGKQ VRLSWG NP NKQ+RGD+ N
Sbjct: 327 EISSVKIPIGKQCGFVQFAQRKNAEDALQGLNGSTIGKQNVRLSWGRNPANKQFRGDNGN 386
Query: 148 HWN--GAHYG 155
WN G +Y
Sbjct: 387 QWNNGGMYYA 396
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 31/139 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------------SDG 58
KV + TG ++GYGFV F + + +G SD
Sbjct: 136 KVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFSGHIMPNTDQPFRLNWASFSMGDRRSDA 195
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
S++ +IFVG L S+V+D L E F S + + K+ + KG GFV+F + +
Sbjct: 196 ASDH-SIFVGDLASDVNDATLLEAFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEK 254
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 255 TQAMTEMNGVYCSSRPMRI 273
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G+ N +++VG L + + L F + GE++++K+ K G GFV+F + A
Sbjct: 101 GQEENKSVWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAA 160
Query: 112 EVALQKLQGTAIGK--QTVRLSWG 133
E L+ G + Q RL+W
Sbjct: 161 EKVLEGFSGHIMPNTDQPFRLNWA 184
>gi|194707750|gb|ACF87959.1| unknown [Zea mays]
gi|414885794|tpg|DAA61808.1| TPA: hypothetical protein ZEAMMB73_995180 [Zea mays]
Length = 433
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/189 (51%), Positives = 119/189 (62%), Gaps = 40/189 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+ ++ L E FS AKV ID+NTG +KGYGFVRFGD++E+++AM EMNG
Sbjct: 204 ASDVNDATLLEAFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTQAMTEMNGVYC 263
Query: 56 ---------------------------SDGKS-NNATIFVGALDSNVSDKDLRELFSHFG 87
SDG N T+FVG LD NVS++DLR+ FS +G
Sbjct: 264 SSRPMRIGPATPRKSSGTSGSNGSAARSDGGDLTNTTVFVGGLDPNVSEEDLRQTFSQYG 323
Query: 88 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN 147
EI SVKIP+GK CGFVQFA RK+AE ALQ L G+ IGKQ VRLSWG NP NKQ+RGD+ N
Sbjct: 324 EISSVKIPIGKQCGFVQFAQRKNAEDALQGLNGSTIGKQNVRLSWGRNPANKQFRGDNGN 383
Query: 148 HWN--GAHY 154
WN G +Y
Sbjct: 384 QWNNGGMYY 392
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F + + +G D +S++
Sbjct: 133 KVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFSGHIMPNTDQPFRLNWASFSMGDRRSDS 192
Query: 63 A---TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L S+V+D L E F S + + K+ + KG GFV+F + +
Sbjct: 193 ASDHSIFVGDLASDVNDATLLEAFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKT 252
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 253 QAMTEMNGVYCSSRPMRI 270
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G+ N +++VG L + + L F + GE++++K+ K G GFV+F + A
Sbjct: 98 GQEENKSVWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAA 157
Query: 112 EVALQKLQGTAIGK--QTVRLSW 132
E L+ G + Q RL+W
Sbjct: 158 EKVLEGFSGHIMPNTDQPFRLNW 180
>gi|1899188|gb|AAC49850.1| DNA binding protein ACBF [Nicotiana tabacum]
Length = 428
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 122/203 (60%), Gaps = 54/203 (26%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+++L++TF+ AKV +D+NTGH+KGYGFVRFGDE+ERSRAM EMNG
Sbjct: 185 ASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYC 244
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
SDG ++N TIFVG LDS
Sbjct: 245 SSRAMRIGVATPKKPSAQQQYSSQAVILSGGYASNGAATHGSQSDGDASNTTIFVGGLDS 304
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+V+D++LR+ F+ FGE++SVKIP GKGCGFVQF++R A+ A+QKL G IGKQ VRLSW
Sbjct: 305 DVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSW 364
Query: 133 GHNPGNKQWRGDHINHWNGAHYG 155
G NKQ R D + WNG + G
Sbjct: 365 GRT-ANKQMRADSGSQWNGGYNG 386
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 35/157 (22%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
+ S L FS+A K+ + TG ++ YGFV F + + NG
Sbjct: 95 MDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAE 154
Query: 56 ----------SDGKSNNAT-----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV--- 96
S G+ T IFVG L S+V+D LR+ F S + + K+ V
Sbjct: 155 QPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDAN 214
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
KG GFV+F + + A+ ++ G + +R+
Sbjct: 215 TGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRI 251
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC------GFVQFANRKDAEVA 114
+N TI++G L + + L FS GE++SVKI K GFV+F AE
Sbjct: 82 DNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKV 141
Query: 115 LQKLQGTAI--GKQTVRLSW-GHNPGNKQ 140
LQ GT + +Q RL+W G + G K+
Sbjct: 142 LQSYNGTMMPNAEQPFRLNWAGFSTGEKR 170
>gi|15594035|emb|CAC69852.1| nucleic acid binding protein [Nicotiana tabacum]
Length = 456
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/198 (49%), Positives = 114/198 (57%), Gaps = 48/198 (24%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+++L ETF+ AKV D+NTG +KGYGFVRFGD+NERS+AM EMNG
Sbjct: 218 AADVTDTLLHETFATKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYC 277
Query: 56 --------------------------------------SDGKSNNATIFVGALDSNVSDK 77
D S N TIFVG LD NVSD+
Sbjct: 278 SSRPMRIGAATPRKSSGYQQQYSSQGGYSNGGPAQGSQPDADSTNTTIFVGGLDPNVSDE 337
Query: 78 DLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
DLR+ F +GEI+SVKIPV + QFANR DAE ALQKL GT IGKQTVRL WG NP
Sbjct: 338 DLRQPFVQYGEIVSVKIPVEERVWVWQFANRNDAEEALQKLNGTFIGKQTVRLFWGRNPA 397
Query: 138 NKQWRGDHINHWNGAHYG 155
NKQ RGD N W G +YG
Sbjct: 398 NKQSRGDFGNQWTGPYYG 415
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAM--------------IEMNGS-----DGKSNN 62
KV + TG ++GYGFV F + + +N + D ++NN
Sbjct: 147 KVIRNKQTGFSEGYGFVEFFTHAAAEKVLQTYSCMTMPNVDQPFRLNWATFSMGDKRANN 206
Query: 63 A---TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+IFVG L ++V+D L E F + + + + K+ KG GFV+F + +
Sbjct: 207 GSDLSIFVGDLAADVTDTLLHETFATKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 266
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 267 QAMTEMNGVYCSSRPMRI 284
>gi|224284226|gb|ACN39849.1| unknown [Picea sitchensis]
Length = 429
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 120/202 (59%), Gaps = 53/202 (26%)
Query: 7 SDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
SD+++ +LQETF SR AKV +D+NTG +KGYGFVRFG+E+ER+RAM EMNG
Sbjct: 194 SDVSDLVLQETFQSRYSSVKAAKVVMDANTGRSKGYGFVRFGEESERARAMTEMNGVYCS 253
Query: 56 -----------------------------------SDGKSNNATIFVGALDSNVSDKDLR 80
SD NN TIFVG LD N +D+DLR
Sbjct: 254 TRPMRISAATPRKSAGVQHQYSGRGNGGSHAQGFPSDNDLNNTTIFVGRLDPNATDEDLR 313
Query: 81 ELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK- 139
++F +GE++SVKIPVGKGCGFVQF NR AE ALQ+L GT I +QTVRLSWG +P NK
Sbjct: 314 QVFGQYGELVSVKIPVGKGCGFVQFGNRASAEEALQRLHGTVIRQQTVRLSWGRSPANKQ 373
Query: 140 ------QWRGDHINHWNGAHYG 155
Q N WNGA+YG
Sbjct: 374 QPQPQGQQPQSDPNQWNGAYYG 395
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 31/141 (21%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------D 57
AK+ + TG ++GYGF+ F + M NG+ D
Sbjct: 121 AKIIRNKYTGQSEGYGFMEFITRTAAEKIMQTYNGTLMPNTEQVFRMNWATFSMGERRLD 180
Query: 58 GKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKD 110
G + +IFVG LDS+VSD L+E F S + + + K+ + KG GFV+F +
Sbjct: 181 G-GPDFSIFVGDLDSDVSDLVLQETFQSRYSSVKAAKVVMDANTGRSKGYGFVRFGEESE 239
Query: 111 AEVALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 240 RARAMTEMNGVYCSTRPMRIS 260
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L FSH GE++S KI K G GF++F R AE +Q
Sbjct: 93 TLWVGDLQFWMDEGYLHTCFSHTGELVSAKIIRNKYTGQSEGYGFMEFITRTAAEKIMQT 152
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +Q R++W
Sbjct: 153 YNGTLMPNTEQVFRMNWA 170
>gi|224286528|gb|ACN40970.1| unknown [Picea sitchensis]
Length = 430
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 120/203 (59%), Gaps = 54/203 (26%)
Query: 7 SDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
SD+++ +LQETF SR AKV +D+NTG +KGYGFVRFG+E+ER+RAM EMNG
Sbjct: 194 SDVSDLVLQETFQSRYSSVKAAKVVMDANTGRSKGYGFVRFGEESERARAMTEMNGVYCS 253
Query: 56 ------------------------------------SDGKSNNATIFVGALDSNVSDKDL 79
SD NN TIFVG LD N +D+DL
Sbjct: 254 TRPMRISAATPRKSAGVQHQYSGRAGNGGSHAQGFPSDNDLNNTTIFVGRLDPNATDEDL 313
Query: 80 RELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
R++F +GE++SVKIPVGKGCGFVQF NR AE ALQ+L GT I +QTVRLSWG +P NK
Sbjct: 314 RQVFGQYGELVSVKIPVGKGCGFVQFGNRASAEEALQRLHGTVIRQQTVRLSWGRSPANK 373
Query: 140 -------QWRGDHINHWNGAHYG 155
Q N WNGA+YG
Sbjct: 374 QQPQPQGQQPQSDPNQWNGAYYG 396
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 31/141 (21%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------D 57
AK+ + TG ++GYGF+ F + M NG+ D
Sbjct: 121 AKIIRNKYTGQSEGYGFMEFITRTAAEKIMQTYNGTLMPNTEQVFRMNWATFSMGERRLD 180
Query: 58 GKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKD 110
G + +IFVG LDS+VSD L+E F S + + + K+ + KG GFV+F +
Sbjct: 181 G-GPDFSIFVGDLDSDVSDLVLQETFQSRYSSVKAAKVVMDANTGRSKGYGFVRFGEESE 239
Query: 111 AEVALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 240 RARAMTEMNGVYCSTRPMRIS 260
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L FSH GE++S KI K G GF++F R AE +Q
Sbjct: 93 TLWVGDLQFWMDEGYLHTCFSHTGELVSAKIIRNKYTGQSEGYGFMEFITRTAAEKIMQT 152
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +Q R++W
Sbjct: 153 YNGTLMPNTEQVFRMNWA 170
>gi|297791731|ref|XP_002863750.1| hypothetical protein ARALYDRAFT_331131 [Arabidopsis lyrata subsp.
lyrata]
gi|297309585|gb|EFH40009.1| hypothetical protein ARALYDRAFT_331131 [Arabidopsis lyrata subsp.
lyrata]
Length = 400
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/163 (53%), Positives = 116/163 (71%), Gaps = 22/163 (13%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGK 59
++T+++L++ FS AKV ID NTG +KGYGFVRFGD++ERS+AM+EMNG K
Sbjct: 193 PEVTDTMLEQIFSEKYPSVKNAKVVIDGNTGRSKGYGFVRFGDDSERSKAMLEMNGV--K 250
Query: 60 SNNATIFVGA-------------LDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFA 106
+ +G LDS+V+D DLR+ F+ +GEI+SVKIPVGKGCGF+QF
Sbjct: 251 CCGRAMRIGPATPRKPSGYHQQGLDSSVTDDDLRQPFAGYGEIVSVKIPVGKGCGFIQFV 310
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
NR++AE AL+KL G+ IGKQTVRLSWG NPGNKQ RG++ + W
Sbjct: 311 NRENAEEALEKLNGSMIGKQTVRLSWGRNPGNKQPRGEYADQW 353
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGKS 60
S KV + +TG T+GYGFV F + + + E+NG S G+
Sbjct: 117 ISSVKVIRNKHTGLTEGYGFVEFVSHDVAEKVLQELNGEAMLNAEQPFRLNWASFSTGEK 176
Query: 61 N-----NATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANR 108
+ +IFVG L V+D L ++FS + + + K+ + KG GFV+F +
Sbjct: 177 RLENGPDLSIFVGDLAPEVTDTMLEQIFSEKYPSVKNAKVVIDGNTGRSKGYGFVRFGDD 236
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 237 SERSKAMLEMNGVKCCGRAMRI 258
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEV 113
+ N TI+VG L + + L FS GEI SVK+ K G GFV+F + AE
Sbjct: 88 TENKTIWVGDLLHWMDENYLNSSFSSAGEISSVKVIRNKHTGLTEGYGFVEFVSHDVAEK 147
Query: 114 ALQKLQGTAI--GKQTVRLSWG 133
LQ+L G A+ +Q RL+W
Sbjct: 148 VLQELNGEAMLNAEQPFRLNWA 169
>gi|9294614|dbj|BAB02953.1| DNA/RNA binding protein-like [Arabidopsis thaliana]
Length = 489
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/187 (51%), Positives = 113/187 (60%), Gaps = 55/187 (29%)
Query: 8 DITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L ETFS AKV IDSNTG +KGYGFVRFGDENERSRA+ EMNG
Sbjct: 212 DVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSN 271
Query: 56 ------------------------------------------SDGKSNNATIFVGALDSN 73
SDG+S NATIFVG +D +
Sbjct: 272 RQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPD 331
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V D+DLR+ FS FGE++SVKIPVGKGCGFVQFA+RK AE A++ L GT IGK TVRLSWG
Sbjct: 332 VIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWG 391
Query: 134 HNPGNKQ 140
+P NKQ
Sbjct: 392 RSP-NKQ 397
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L FSH GE+ SVK+ K G GFV+F +R AE LQ
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 118 LQGTAI--GKQTVRLSWG 133
G+ + Q R++W
Sbjct: 169 YSGSVMPNSDQPFRINWA 186
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 30/142 (21%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN---------------- 62
S KV + T ++GYGFV F + +GS +++
Sbjct: 135 SSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKR 194
Query: 63 -------ATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANR 108
++FVG L +V+D L E FS + + S K+ + KG GFV+F +
Sbjct: 195 AVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ AL ++ G + +R+
Sbjct: 255 NERSRALTEMNGAYCSNRQMRV 276
>gi|116788528|gb|ABK24911.1| unknown [Picea sitchensis]
Length = 397
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 116/209 (55%), Gaps = 61/209 (29%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
++ + +LQETF AKV ID+NTG TKGYGFVRFGDENE++RAM EMNG
Sbjct: 154 PEVIDILLQETFQSRYSSVKSAKVVIDANTGRTKGYGFVRFGDENEKNRAMTEMNGVYCC 213
Query: 56 ------------------------------------------SDGKSNNATIFVGALDSN 73
SD NN TIFVG LD N
Sbjct: 214 SRPMRINEATPKKSLGLQQSYSMKGNYYTQAYGGAVAGQGFQSDNDPNNTTIFVGGLDPN 273
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+D+DLR++F FGEI+ VKIPVGKGCGFVQF NR AE ALQKL GT IG+Q++RLSWG
Sbjct: 274 ATDEDLRQVFGPFGEIVYVKIPVGKGCGFVQFTNRSSAEEALQKLHGTIIGQQSIRLSWG 333
Query: 134 HNPGNKQ---W---RGDHINHWN--GAHY 154
+P NKQ W N WN GA+Y
Sbjct: 334 RSPANKQTASWGVQPQPDPNQWNGGGAYY 362
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------- 56
E K+ + TG +GYGFV R + ++G+
Sbjct: 76 EVVVSVKIIRNKQTGQPEGYGFVELDSRASAERILQTLHGTPMPNSPHPFRLNWATFGAG 135
Query: 57 DGKSNNAT---IFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFA 106
D ++ T IFVG L V D L+E F S + + S K+ + KG GFV+F
Sbjct: 136 DRRTEPGTGYSIFVGDLGPEVIDILLQETFQSRYSSVKSAKVVIDANTGRTKGYGFVRFG 195
Query: 107 NRKDAEVALQKLQGTAIGKQTVRL 130
+ + A+ ++ G + +R+
Sbjct: 196 DENEKNRAMTEMNGVYCCSRPMRI 219
>gi|357149687|ref|XP_003575198.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 421
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 114/184 (61%), Gaps = 36/184 (19%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L E F+ AKV ID+NTG ++GYGFVRFGD+N+R+ AM EMNG
Sbjct: 202 DVTDDMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDRTHAMTEMNGVYCST 261
Query: 56 ------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
SDG N T++VG LD NVS+ +LR+ F+ +G++ S
Sbjct: 262 RPIRIGPATPRRTSGDSGSSPPRQSDGDLTNRTVYVGGLDPNVSEDELRKTFAKYGDVAS 321
Query: 92 VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNG 151
VKIPVGK CGFVQF NR DAE ALQ L G+ IGKQ VRLSWG +P +KQ RGD + NG
Sbjct: 322 VKIPVGKQCGFVQFVNRADAEEALQALSGSTIGKQAVRLSWGRSPASKQPRGDSGHRRNG 381
Query: 152 AHYG 155
+YG
Sbjct: 382 MYYG 385
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + ++G ++GYGFV F +A+ G S G+
Sbjct: 129 KVIRNRHSGVSEGYGFVEFYSHASAEKALQNFAGHVMPNTDRAFKLNWASYSVGEKRSEL 188
Query: 60 SNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKDAE 112
+++ +IFVG L +V+D L ELF++ + + K+ + +G GFV+F + D
Sbjct: 189 ASDHSIFVGDLAVDVTDDMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDRT 248
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 249 HAMTEMNGVYCSTRPIRI 266
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQK 117
TI+VG L + + L F GE++++K+ V +G GFV+F + AE ALQ
Sbjct: 100 TIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRHSGVSEGYGFVEFYSHASAEKALQN 159
Query: 118 LQGTAIGK--QTVRLSWG 133
G + + +L+W
Sbjct: 160 FAGHVMPNTDRAFKLNWA 177
>gi|219888851|gb|ACL54800.1| unknown [Zea mays]
gi|414589690|tpg|DAA40261.1| TPA: hypothetical protein ZEAMMB73_589753 [Zea mays]
Length = 322
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 96/189 (50%), Positives = 115/189 (60%), Gaps = 40/189 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+ ++ L E FS AKV ID+NTG +KGYGFVRFGD++E++ AM EMNG
Sbjct: 91 ASDVNDATLLEVFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTHAMTEMNGVYC 150
Query: 56 ----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFG 87
G N T+FVG LD +VS++DLR+ FS +G
Sbjct: 151 SSRPMRIGPATPRKSSGTSGSNGSSARPDGGDLTNTTVFVGGLDPDVSEEDLRQAFSQYG 210
Query: 88 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN 147
EI SVKIPVGK CGFVQFA RK+AE ALQ L G+ IGKQ VRLSWG NP NKQ+RGD+ N
Sbjct: 211 EISSVKIPVGKQCGFVQFAQRKNAEDALQGLNGSTIGKQAVRLSWGRNPANKQFRGDNGN 270
Query: 148 -HW-NGAHY 154
W NG Y
Sbjct: 271 MQWKNGGVY 279
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F R + +G D +S+
Sbjct: 20 KVIRNKQTGQSEGYGFVEFYSHAAAERVLEGFSGHIMPNTDQPFRLNWASFSMGDRRSDV 79
Query: 63 A---TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L S+V+D L E+F S + + K+ + KG GFV+F + +
Sbjct: 80 ASDHSIFVGDLASDVNDATLLEVFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKT 139
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 140 HAMTEMNGVYCSSRPMRI 157
>gi|242073268|ref|XP_002446570.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
gi|241937753|gb|EES10898.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
Length = 423
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 91/186 (48%), Positives = 117/186 (62%), Gaps = 36/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +L E FS AKV ID+NTG ++GYGFVRFGD+N++S AM EMNG
Sbjct: 202 AADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYC 261
Query: 56 --------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
SDG S+N T++VG LD NVS+ +LR+ F+ +G++
Sbjct: 262 STRPIRIGPATPRRSSGDSGSSTPGHSDGDSSNRTVYVGGLDPNVSEDELRKAFAKYGDL 321
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
SVKIP+GK CGFVQFA+R DAE ALQ L G+ IGKQ VRLSWG +P +KQ RGD N
Sbjct: 322 ASVKIPLGKQCGFVQFASRTDAEEALQGLNGSLIGKQAVRLSWGRSPSHKQSRGDSGNRR 381
Query: 150 NGAHYG 155
N +YG
Sbjct: 382 NNMYYG 387
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + TG ++GYGFV F +A+ G S G+
Sbjct: 131 KVIRNRQTGQSEGYGFVEFFSHASAEKALQNFTGHVMPNTDRAFKLNWASYSMGEKRSEV 190
Query: 60 SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+++ +IFVG L ++V+D+ L ELF S + + K+ + +G GFV+F + D
Sbjct: 191 ASDHSIFVGDLAADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKS 250
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 251 HAMSEMNGVYCSTRPIRI 268
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
+G +G N TI+VG L + + L F GE++++K+ + G GFV+F +
Sbjct: 92 SGGNGCEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFS 151
Query: 108 RKDAEVALQKLQGTAIGK--QTVRLSW 132
AE ALQ G + + +L+W
Sbjct: 152 HASAEKALQNFTGHVMPNTDRAFKLNW 178
>gi|414589689|tpg|DAA40260.1| TPA: hypothetical protein ZEAMMB73_589753 [Zea mays]
Length = 424
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 96/188 (51%), Positives = 115/188 (61%), Gaps = 40/188 (21%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
SD+ ++ L E FS AKV ID+NTG +KGYGFVRFGD++E++ AM EMNG
Sbjct: 194 SDVNDATLLEVFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTHAMTEMNGVYCS 253
Query: 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
G N T+FVG LD +VS++DLR+ FS +GE
Sbjct: 254 SRPMRIGPATPRKSSGTSGSNGSSARPDGGDLTNTTVFVGGLDPDVSEEDLRQAFSQYGE 313
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN- 147
I SVKIPVGK CGFVQFA RK+AE ALQ L G+ IGKQ VRLSWG NP NKQ+RGD+ N
Sbjct: 314 ISSVKIPVGKQCGFVQFAQRKNAEDALQGLNGSTIGKQAVRLSWGRNPANKQFRGDNGNM 373
Query: 148 HW-NGAHY 154
W NG Y
Sbjct: 374 QWKNGGVY 381
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F R + +G D +S+
Sbjct: 122 KVIRNKQTGQSEGYGFVEFYSHAAAERVLEGFSGHIMPNTDQPFRLNWASFSMGDRRSDV 181
Query: 63 A---TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L S+V+D L E+F S + + K+ + KG GFV+F + +
Sbjct: 182 ASDHSIFVGDLASDVNDATLLEVFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKT 241
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 242 HAMTEMNGVYCSSRPMRI 259
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G+ N TI+VG L + + L F + GE++++K+ K G GFV+F + A
Sbjct: 87 GQEENKTIWVGDLHFWMDENYLHNCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAA 146
Query: 112 EVALQKLQGTAIGK--QTVRLSW 132
E L+ G + Q RL+W
Sbjct: 147 ERVLEGFSGHIMPNTDQPFRLNW 169
>gi|115446801|ref|NP_001047180.1| Os02g0567900 [Oryza sativa Japonica Group]
gi|113536711|dbj|BAF09094.1| Os02g0567900, partial [Oryza sativa Japonica Group]
Length = 259
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 114/184 (61%), Gaps = 36/184 (19%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L + F++ AKV ID+NTG ++GYGFVRFGD+N+++ AM EMNG
Sbjct: 40 DVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCST 99
Query: 56 ------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
SD S N TI+VG LD N ++ +LR+ F+ +G++ S
Sbjct: 100 RPIRIGPATPRRSSGDSGSSPPRQSDSDSTNRTIYVGGLDPNATEDELRKAFAKYGDLAS 159
Query: 92 VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNG 151
VKIPVGK CGFVQF NR DAE ALQ L G+ IGKQ VRLSWG +P +KQ RGD + NG
Sbjct: 160 VKIPVGKQCGFVQFVNRPDAEEALQGLNGSTIGKQAVRLSWGRSPASKQSRGDSGHRRNG 219
Query: 152 AHYG 155
+YG
Sbjct: 220 MYYG 223
>gi|218191015|gb|EEC73442.1| hypothetical protein OsI_07730 [Oryza sativa Indica Group]
Length = 312
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 114/184 (61%), Gaps = 36/184 (19%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L + F++ AKV ID+NTG ++GYGFVRFGD+N+++ AM EMNG
Sbjct: 93 DVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCST 152
Query: 56 ------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
SD S N TI+VG LD N ++ +LR+ F+ +G++ S
Sbjct: 153 RPIRIGPATPRRSSGDSGSSPPRQSDSDSTNRTIYVGGLDPNATEDELRKAFAKYGDLAS 212
Query: 92 VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNG 151
VKIPVGK CGFVQF NR DAE ALQ L G+ IGKQ VRLSWG +P +KQ RGD + NG
Sbjct: 213 VKIPVGKQCGFVQFVNRPDAEEALQGLNGSTIGKQAVRLSWGRSPASKQSRGDSGHRRNG 272
Query: 152 AHYG 155
+YG
Sbjct: 273 MYYG 276
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + ++G ++GYGFV F +A+ +G S G+
Sbjct: 20 KVIRNRHSGVSEGYGFVEFFSHASAEKALQNFSGHVMPNTDRAFKLNWASYSMGEKRSEL 79
Query: 60 SNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+++ +IFVG L +V+D+ L +LF+ + + K+ + +G GFV+F + D
Sbjct: 80 ASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKT 139
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 140 HAMTEMNGAYCSTRPIRI 157
>gi|357163840|ref|XP_003579863.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 428
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 115/186 (61%), Gaps = 36/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +L E F+ AKV ID+NTG ++GYGFVRFG+++++SRAM EMNG
Sbjct: 205 AADVTDEMLMELFASKYRSVKGAKVIIDANTGRSRGYGFVRFGEDSDKSRAMTEMNGVYC 264
Query: 56 --------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
SDG S N T++VG LD NVS+ +LR+ F+ +G++
Sbjct: 265 STRPIRIGPATPRRTAGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKSFAKYGDV 324
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
SVKIP GK CGFVQ+ NR DAE ALQ L G+ IGKQ VRLSWG +P +KQ RGD N
Sbjct: 325 ASVKIPQGKQCGFVQYVNRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQPRGDSGNRR 384
Query: 150 NGAHYG 155
N +YG
Sbjct: 385 NNMYYG 390
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGKS---- 60
KV + TG T+GYGFV F +A+ G S G+
Sbjct: 134 KVIRNRQTGQTEGYGFVEFYSHASADKALQNFTGHAMPNTDRPFKLNWASYSMGEKRSEV 193
Query: 61 -NNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
++ +IFVG L ++V+D+ L ELF S + + K+ + +G GFV+F D
Sbjct: 194 VSDHSIFVGDLAADVTDEMLMELFASKYRSVKGAKVIIDANTGRSRGYGFVRFGEDSDKS 253
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 254 RAMTEMNGVYCSTRPIRI 271
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
+G + N TI+VG L + + L F GE++++K+ + G GFV+F +
Sbjct: 95 SGGNACEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQTEGYGFVEFYS 154
Query: 108 RKDAEVALQKLQGTAIGK--QTVRLSW 132
A+ ALQ G A+ + +L+W
Sbjct: 155 HASADKALQNFTGHAMPNTDRPFKLNW 181
>gi|46806694|dbj|BAD17764.1| putative nucleic acid binding protein [Oryza sativa Japonica Group]
Length = 396
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 114/184 (61%), Gaps = 36/184 (19%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L + F++ AKV ID+NTG ++GYGFVRFGD+N+++ AM EMNG
Sbjct: 177 DVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCST 236
Query: 56 ------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
SD S N TI+VG LD N ++ +LR+ F+ +G++ S
Sbjct: 237 RPIRIGPATPRRSSGDSGSSPPRQSDSDSTNRTIYVGGLDPNATEDELRKAFAKYGDLAS 296
Query: 92 VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNG 151
VKIPVGK CGFVQF NR DAE ALQ L G+ IGKQ VRLSWG +P +KQ RGD + NG
Sbjct: 297 VKIPVGKQCGFVQFVNRPDAEEALQGLNGSTIGKQAVRLSWGRSPASKQSRGDSGHRRNG 356
Query: 152 AHYG 155
+YG
Sbjct: 357 MYYG 360
>gi|222628961|gb|EEE61093.1| hypothetical protein OsJ_14988 [Oryza sativa Japonica Group]
Length = 373
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 114/186 (61%), Gaps = 36/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +L E F+ AKV ID+NTG ++GYGFVRFGD+N++S AM EMNG
Sbjct: 152 AADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYC 211
Query: 56 --------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
SDG S N T++VG LD NVS+ +LR+ F+ +G++
Sbjct: 212 STRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDV 271
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
SVKIP+GK CGFVQF +R DAE ALQ L G+ IGKQ VRLSWG +P +KQ R D +
Sbjct: 272 ASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQSRADSGSRR 331
Query: 150 NGAHYG 155
N +YG
Sbjct: 332 NNMYYG 337
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + TG ++GYGFV F +A+ G S G+
Sbjct: 81 KVIRNRQTGQSEGYGFVEFYSHGSAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEV 140
Query: 60 SNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKDAE 112
+++ +IFVG L ++V+D+ L ELF++ + + K+ + +G GFV+F + D
Sbjct: 141 ASDYSIFVGDLAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKS 200
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 201 HAMTEMNGAYCSTRPIRI 218
>gi|125548504|gb|EAY94326.1| hypothetical protein OsI_16094 [Oryza sativa Indica Group]
Length = 426
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 114/186 (61%), Gaps = 36/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +L E F+ AKV ID+NTG ++GYGFVRFGD+N++S AM EMNG
Sbjct: 205 AADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYC 264
Query: 56 --------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
SDG S N T++VG LD NVS+ +LR+ F+ +G++
Sbjct: 265 STRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDV 324
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
SVKIP+GK CGFVQF +R DAE ALQ L G+ IGKQ VRLSWG +P +KQ R D +
Sbjct: 325 ASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQSRADSGSRR 384
Query: 150 NGAHYG 155
N +YG
Sbjct: 385 NNMYYG 390
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + TG ++GYGFV F +A+ G S G+
Sbjct: 134 KVIRNRQTGQSEGYGFVEFYSHGSAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEV 193
Query: 60 SNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKDAE 112
+++ +IFVG L ++V+D+ L ELF++ + + K+ + +G GFV+F + D
Sbjct: 194 ASDYSIFVGDLAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKS 253
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 254 HAMTEMNGAYCSTRPIRI 271
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
+G +G N TI+VG L + + L F GE++++K+ + G GFV+F +
Sbjct: 95 SGGNGCEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFYS 154
Query: 108 RKDAEVALQKLQGTAIGK--QTVRLSW 132
AE ALQ G + + +L+W
Sbjct: 155 HGSAEKALQNFTGHVMPNTDRPFKLNW 181
>gi|116310076|emb|CAH67097.1| H0818E04.14 [Oryza sativa Indica Group]
Length = 426
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 114/186 (61%), Gaps = 36/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +L E F+ AKV ID+NTG ++GYGFVRFGD+N++S AM EMNG
Sbjct: 205 AADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYC 264
Query: 56 --------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
SDG S N T++VG LD NVS+ +LR+ F+ +G++
Sbjct: 265 STRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDV 324
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
SVKIP+GK CGFVQF +R DAE ALQ L G+ IGKQ VRLSWG +P +KQ R D +
Sbjct: 325 ASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQSRADSGSRR 384
Query: 150 NGAHYG 155
N +YG
Sbjct: 385 NNMYYG 390
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + TG ++GYGFV F +A+ G S G+
Sbjct: 134 KVIRNRQTGQSEGYGFVEFYSHGSAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEV 193
Query: 60 SNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKDAE 112
+++ +IFVG L ++V+D+ L ELF++ + + K+ + +G GFV+F + D
Sbjct: 194 ASDYSIFVGDLAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKS 253
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 254 HAMTEMNGAYCSTRPIRI 271
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
+G +G N TI+VG L + + L F GE++++K+ + G GFV+F +
Sbjct: 95 SGGNGCEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFYS 154
Query: 108 RKDAEVALQKLQGTAIGK--QTVRLSW 132
AE ALQ G + + +L+W
Sbjct: 155 HGSAEKALQNFTGHVMPNTDRPFKLNW 181
>gi|297602825|ref|NP_001052934.2| Os04g0449900 [Oryza sativa Japonica Group]
gi|255675510|dbj|BAF14848.2| Os04g0449900 [Oryza sativa Japonica Group]
Length = 387
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 114/186 (61%), Gaps = 36/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +L E F+ AKV ID+NTG ++GYGFVRFGD+N++S AM EMNG
Sbjct: 166 AADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYC 225
Query: 56 --------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
SDG S N T++VG LD NVS+ +LR+ F+ +G++
Sbjct: 226 STRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDV 285
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
SVKIP+GK CGFVQF +R DAE ALQ L G+ IGKQ VRLSWG +P +KQ R D +
Sbjct: 286 ASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQSRADSGSRR 345
Query: 150 NGAHYG 155
N +YG
Sbjct: 346 NNMYYG 351
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + TG ++GYGFV F +A+ G S G+
Sbjct: 95 KVIRNRQTGQSEGYGFVEFYSHGSAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEV 154
Query: 60 SNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKDAE 112
+++ +IFVG L ++V+D+ L ELF++ + + K+ + +G GFV+F + D
Sbjct: 155 ASDYSIFVGDLAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKS 214
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 215 HAMTEMNGAYCSTRPIRI 232
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
+G +G N TI+VG L + + L F GE++++K+ + G GFV+F +
Sbjct: 56 SGGNGCEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFYS 115
Query: 108 RKDAEVALQKLQGTAIGK--QTVRLSW 132
AE ALQ G + + +L+W
Sbjct: 116 HGSAEKALQNFTGHVMPNTDRPFKLNW 142
>gi|148910710|gb|ABR18422.1| unknown [Picea sitchensis]
Length = 418
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 113/203 (55%), Gaps = 54/203 (26%)
Query: 6 VSDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+ +LQETF SR AKV D TG +KGYGFVRFGDENE+ RAM EMNG
Sbjct: 180 ASDVTDYLLQETFRSRYQTVKGAKVVSDRVTGRSKGYGFVRFGDENEQVRAMTEMNGMFC 239
Query: 56 ------------------------------------SDGKSNNATIFVGALDSNVSDKDL 79
SD NN TIFVG LD +V+D+ L
Sbjct: 240 SSRPMRTGPATTKKTTGFQQPYPKAAAAAVPPQVVASDNDPNNTTIFVGGLDPSVTDEML 299
Query: 80 RELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
R+LF FGE++ VKIPVGK CGFVQF NR AE ALQ L GT +G+Q +RLSWG +P NK
Sbjct: 300 RQLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRSPANK 359
Query: 140 Q-----W---RGDHINHWNGAHY 154
Q W + N WNGA Y
Sbjct: 360 QVQTPGWVQPQQPDPNQWNGAAY 382
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 30/144 (20%)
Query: 15 QETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN------------- 61
QE S K+ + TG ++GYGFV F R + NG+ +
Sbjct: 103 QEVVS-VKIIRNKQTGQSEGYGFVEFASHAGAERFLQNHNGAQMPNTEQFYRLNWATFGI 161
Query: 62 ---------NATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQF 105
+ IFVG L S+V+D L+E F S + + K+ KG GFV+F
Sbjct: 162 GEKRPEMGPDYPIFVGDLASDVTDYLLQETFRSRYQTVKGAKVVSDRVTGRSKGYGFVRF 221
Query: 106 ANRKDAEVALQKLQGTAIGKQTVR 129
+ + A+ ++ G + +R
Sbjct: 222 GDENEQVRAMTEMNGMFCSSRPMR 245
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + ++ F + E++SVKI K G GFV+FA+ AE LQ
Sbjct: 80 TLWVGDLQYWMDETYMQSCFGNNQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERFLQN 139
Query: 118 LQGTAIG--KQTVRLSWG 133
G + +Q RL+W
Sbjct: 140 HNGAQMPNTEQFYRLNWA 157
>gi|116789456|gb|ABK25253.1| unknown [Picea sitchensis]
Length = 487
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 97/201 (48%), Positives = 113/201 (56%), Gaps = 53/201 (26%)
Query: 7 SDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
SD+T+ +LQETF SR AKV D TG +KGYGFVRFGDENE+ RAM EMNG
Sbjct: 181 SDVTDYLLQETFRSRYQTVKGAKVVSDRVTGRSKGYGFVRFGDENEQVRAMTEMNGMFCS 240
Query: 56 ----------------------------------SDGKSNNATIFVGALDSNVSDKDLRE 81
SD NN TIFVG LD +V+D+ LR+
Sbjct: 241 SRPMRTGPATTKKTTGFQQPYPKAAAAVPPQVVASDNDPNNTTIFVGGLDPSVTDEMLRQ 300
Query: 82 LFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ- 140
LF FGE++ VKIPVGK CGFVQF NR AE ALQ L GT +G+Q +RLSWG +P NKQ
Sbjct: 301 LFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRSPANKQV 360
Query: 141 ----W---RGDHINHWNGAHY 154
W + N WNGA Y
Sbjct: 361 QTPGWVQPQQPDPNQWNGAAY 381
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 30/144 (20%)
Query: 15 QETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG-------KSNNAT--- 64
QE S K+ + TG ++GYGFV F R + NG+ + N AT
Sbjct: 103 QEVVS-VKIIRNKQTGQSEGYGFVEFASHAGAERFLQNHNGAQMPNTEQFYRLNWATFGI 161
Query: 65 ------------IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQF 105
IFVG L S+V+D L+E F S + + K+ KG GFV+F
Sbjct: 162 GEKRPEMGPDYPIFVGDLASDVTDYLLQETFRSRYQTVKGAKVVSDRVTGRSKGYGFVRF 221
Query: 106 ANRKDAEVALQKLQGTAIGKQTVR 129
+ + A+ ++ G + +R
Sbjct: 222 GDENEQVRAMTEMNGMFCSSRPMR 245
>gi|212722984|ref|NP_001132004.1| uncharacterized protein LOC100193409 [Zea mays]
gi|194693170|gb|ACF80669.1| unknown [Zea mays]
Length = 422
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 105/172 (61%), Gaps = 38/172 (22%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
SD+ ++ L E FS AKV ID+NTG +KGYGFVRFGD++E++ AM EMNG
Sbjct: 194 SDVNDATLLEVFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTHAMTEMNGVYCS 253
Query: 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
G N T+FVG LD +VS++DLR+ FS +GE
Sbjct: 254 SRPMRIGPATPRKSSGTSGSNGSSARPDGGDLTNTTVFVGGLDPDVSEEDLRQAFSQYGE 313
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I SVKIPVGK CGFVQFA RK+AE ALQ L G+ IGKQ VRLSWG NP NKQ
Sbjct: 314 ISSVKIPVGKQCGFVQFAQRKNAEDALQGLNGSTIGKQAVRLSWGRNPANKQ 365
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------SDGKSNN 62
KV + TG ++GYGFV F R + +G D +S+
Sbjct: 122 KVIRNKQTGQSEGYGFVEFYSHAAAERVLEGFSGHIMPNTDQPFRLNWASFSMGDRRSDV 181
Query: 63 A---TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
A +IFVG L S+V+D L E+F S + + K+ + KG GFV+F + +
Sbjct: 182 ASDHSIFVGDLASDVNDATLLEVFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKT 241
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 242 HAMTEMNGVYCSSRPMRI 259
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G+ N TI+VG L + + L F + GE++++K+ K G GFV+F + A
Sbjct: 87 GQEENKTIWVGDLHFWMDENYLHNCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAA 146
Query: 112 EVALQKLQGTAIGK--QTVRLSWG 133
E L+ G + Q RL+W
Sbjct: 147 ERVLEGFSGHIMPNTDQPFRLNWA 170
>gi|212275334|ref|NP_001130489.1| uncharacterized protein LOC100191587 [Zea mays]
gi|194689276|gb|ACF78722.1| unknown [Zea mays]
Length = 417
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 114/186 (61%), Gaps = 38/186 (20%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L E FS AKV ID+NTG ++GYGFVRFGD+N+++ AM EMNG
Sbjct: 196 DVTDEMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTLAMTEMNGVYCST 255
Query: 56 ------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
SD S N T++VG LD NVS+ +LR+ F+ +G++ S
Sbjct: 256 RPIRVGLATPRRSQGDSGSSPPRQSDVDSTNRTVYVGGLDPNVSEDELRKAFAKYGDLAS 315
Query: 92 VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD--HINHW 149
VKIP GK CGFVQF NR DAE ALQ L G+ IGKQ +RLSWG +P +KQ RGD H +
Sbjct: 316 VKIPFGKQCGFVQFVNRVDAEEALQGLNGSTIGKQAIRLSWGRSPTSKQSRGDYGHRRNG 375
Query: 150 NGAHYG 155
NG +YG
Sbjct: 376 NGMYYG 381
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGKSNNA- 63
KV + ++G ++GYGFV F +A+ +G S G+ +
Sbjct: 123 KVIRNRHSGVSEGYGFVEFYSHVSAEKALQNFSGHVMPNTERAFKLNWASYSMGEKRSEV 182
Query: 64 ----TIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKDAE 112
+IFVG L +V+D+ L ELFS+ + + K+ + +G GFV+F + D
Sbjct: 183 PPDHSIFVGDLAVDVTDEMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKT 242
Query: 113 VALQKLQGTAIGKQTVRL 130
+A+ ++ G + +R+
Sbjct: 243 LAMTEMNGVYCSTRPIRV 260
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQK 117
TI+VG L + + L F GE++++K+ V +G GFV+F + AE ALQ
Sbjct: 94 TIWVGDLQYWMDENYLHSCFGPGGEVVNIKVIRNRHSGVSEGYGFVEFYSHVSAEKALQN 153
Query: 118 LQGTAIG--KQTVRLSWG 133
G + ++ +L+W
Sbjct: 154 FSGHVMPNTERAFKLNWA 171
>gi|195620484|gb|ACG32072.1| nucleic acid binding protein [Zea mays]
gi|195625400|gb|ACG34530.1| nucleic acid binding protein [Zea mays]
Length = 369
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 115/186 (61%), Gaps = 37/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +L E FS AKV ID+NTG ++GYGFVRFGD+N++S AM EMNG
Sbjct: 149 AADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYC 208
Query: 56 --------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
SDG S+N T++VG LD NVS+ +LR+ F+ + ++
Sbjct: 209 STRPIRIGPATPRRSSGDSGSSTPGHSDGDSSNRTVYVGGLDPNVSEDELRKAFAKY-DL 267
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
SVKIP+GK CGFVQF +R DAE ALQ L G+ IGKQ VRLSW +P +KQ RGD +N
Sbjct: 268 ASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSLIGKQAVRLSWVRSPSHKQSRGDSVNRR 327
Query: 150 NGAHYG 155
N +YG
Sbjct: 328 NNMYYG 333
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + TG ++GYGFV F +A+ G S G+
Sbjct: 78 KVIRNRQTGQSEGYGFVEFFSHASAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEV 137
Query: 60 SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+++ +IFVG L ++V+D+ L ELF S + + K+ + +G GFV+F + D
Sbjct: 138 ASDHSIFVGDLAADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKS 197
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 198 HAMSEMNGVYCSTRPIRI 215
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
+G +G N TI+VG L + + L F GE++++K+ + G GFV+F +
Sbjct: 39 SGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFS 98
Query: 108 RKDAEVALQKLQGTAIGK--QTVRLSWG 133
AE ALQ G + + +L+W
Sbjct: 99 HASAEKALQNFTGHVMPNTDRPFKLNWA 126
>gi|194703366|gb|ACF85767.1| unknown [Zea mays]
Length = 420
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 115/186 (61%), Gaps = 37/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +L E FS AKV ID+NTG ++GYGFVRFGD+N++S AM EMNG
Sbjct: 200 AADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYC 259
Query: 56 --------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
SDG S+N T++VG LD NVS+ +LR+ F+ + ++
Sbjct: 260 STRPIRIGPATPRRSSGDSGSSTPGHSDGDSSNRTVYVGGLDPNVSEDELRKAFAKY-DL 318
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
SVKIP+GK CGFVQF +R DAE ALQ L G+ IGKQ VRLSW +P +KQ RGD +N
Sbjct: 319 ASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSLIGKQAVRLSWVRSPSHKQSRGDSVNRR 378
Query: 150 NGAHYG 155
N +YG
Sbjct: 379 NNMYYG 384
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + TG ++GYGFV F +A+ G S G+
Sbjct: 129 KVIRNRQTGQSEGYGFVEFFSHASAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEV 188
Query: 60 SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+++ +IFVG L ++V+D+ L ELF S + + K+ + +G GFV+F + D
Sbjct: 189 ASDHSIFVGDLAADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKS 248
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 249 HAMSEMNGVYCSTRPIRI 266
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
+G +G N TI+VG L + + L F GE++++K+ + G GFV+F +
Sbjct: 90 SGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFS 149
Query: 108 RKDAEVALQKLQGTAIGK--QTVRLSWG 133
AE ALQ G + + +L+W
Sbjct: 150 HASAEKALQNFTGHVMPNTDRPFKLNWA 177
>gi|226495169|ref|NP_001150649.1| nucleic acid binding protein [Zea mays]
gi|195640856|gb|ACG39896.1| nucleic acid binding protein [Zea mays]
Length = 420
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 115/186 (61%), Gaps = 37/186 (19%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +L E FS AKV ID+NTG ++GYGFVRFGD+N++S AM EMNG
Sbjct: 200 AADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYC 259
Query: 56 --------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
SDG S+N T++VG LD NVS+ +LR+ F+ + ++
Sbjct: 260 STRPIRIGPATPRRSSGDSGSSTPGHSDGDSSNRTVYVGGLDPNVSEDELRKAFAKY-DL 318
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
SVKIP+GK CGFVQF +R DAE ALQ L G+ IGKQ VRLSW +P +KQ RGD +N
Sbjct: 319 ASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSLIGKQAVRLSWVRSPSHKQSRGDSVNRR 378
Query: 150 NGAHYG 155
N +YG
Sbjct: 379 NNMYYG 384
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + TG ++GYGFV F +A+ G S G+
Sbjct: 129 KVIRNRQTGQSEGYGFVEFFSHASAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEV 188
Query: 60 SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+++ +IFVG L ++V+D+ L ELF S + + K+ + +G GFV+F + D
Sbjct: 189 ASDHSIFVGDLAADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKS 248
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 249 HAMSEMNGVYCSTRPIRI 266
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
+G +G N TI+VG L + + L F GE++++K+ + G GFV+F +
Sbjct: 90 SGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFS 149
Query: 108 RKDAEVALQKLQGTAIGK--QTVRLSWG 133
AE ALQ G + + +L+W
Sbjct: 150 HASAEKALQNFTGHVMPNTDRPFKLNWA 177
>gi|255554923|ref|XP_002518499.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223542344|gb|EEF43886.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 430
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/194 (46%), Positives = 113/194 (58%), Gaps = 45/194 (23%)
Query: 6 VSDITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
+D+T+ ILQ+TF AKV ID TG TKGYGFVRFGDE+E+ RAM +MNG+
Sbjct: 189 AADVTDYILQDTFRVHYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTDMNGAFC 248
Query: 57 -----------------------------------DGKSNNATIFVGALDSNVSDKDLRE 81
+ NN TIFVG LDSNV+D +LRE
Sbjct: 249 STRPMRIGLATNKNAVTGQQYPKASYQNSQTQGENENDPNNTTIFVGNLDSNVTDDNLRE 308
Query: 82 LFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQW 141
LF +G++L VKIP GK CGFVQFA+R AE AL+ L GT++ Q++RLSWG +P NKQ
Sbjct: 309 LFGRYGQLLHVKIPAGKRCGFVQFADRSCAEEALRLLNGTSLSGQSIRLSWGRSPSNKQP 368
Query: 142 RGDHINHWNGAHYG 155
+ D N WN +YG
Sbjct: 369 QPD-ANQWNAGYYG 381
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 28/145 (19%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---DGKSN-------------- 61
+ KV + TG +GYGF+ FG R + NG+ +G+ N
Sbjct: 116 TSVKVIRNKQTGQVEGYGFIEFGSHGTAERILQTYNGTPMPNGEQNFRLNWASFSGGDKR 175
Query: 62 ----NATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPVG------KGCGFVQFANRKD 110
+ TIFVG L ++V+D L++ F H+ + K+ + KG GFV+F + +
Sbjct: 176 DDTPDFTIFVGDLAADVTDYILQDTFRVHYPSVKGAKVVIDRLTGRTKGYGFVRFGDESE 235
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHN 135
A+ + G + +R+ N
Sbjct: 236 QVRAMTDMNGAFCSTRPMRIGLATN 260
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + + F+H GE+ SVK+ K G GF++F + AE LQ
Sbjct: 90 TLWIGDLQYWMDENYINSCFAHTGEVTSVKVIRNKQTGQVEGYGFIEFGSHGTAERILQT 149
Query: 118 LQGTAI--GKQTVRLSW 132
GT + G+Q RL+W
Sbjct: 150 YNGTPMPNGEQNFRLNW 166
>gi|168064363|ref|XP_001784132.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664332|gb|EDQ51056.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 453
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 110/212 (51%), Gaps = 64/212 (30%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF AKV D+NTG +KGYGFVRFGDE ER+RAM EMNG
Sbjct: 144 APDVTDYMLQETFRTRYPSVKGAKVVTDANTGRSKGYGFVRFGDEMERNRAMSEMNGIYC 203
Query: 56 ----------------------------------------------SDGKSNNATIFVGA 69
+D NN TIFVG
Sbjct: 204 SSRPMRISAATPKKSLGPNQLNPKVSPVAVATYAAYGAQPSPQAFPTDNDPNNTTIFVGG 263
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129
LD V D+DLR +F FGE++ VKIP GKGCGFVQF +R AE ALQ+L T IG Q VR
Sbjct: 264 LDPAVGDEDLRNVFGQFGELVYVKIPAGKGCGFVQFTHRACAEEALQRLHQTVIGTQAVR 323
Query: 130 LSWGHNPGNKQ-----WRGDH--INHWNGAHY 154
LSWG +PGNKQ W G H N WN A Y
Sbjct: 324 LSWGRSPGNKQTSDPAW-GHHQDPNQWNAAGY 354
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA------------------ 63
K+ + TG+++GYGFV F + + NG+ +
Sbjct: 73 KIIRNKQTGYSEGYGFVEFVSHVAAEKILQAYNGTQMPNTEQPFRLNWASFGIGERRPEA 132
Query: 64 ----TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+IFVG L +V+D L+E F + + + K+ KG GFV+F + +
Sbjct: 133 GPEHSIFVGDLAPDVTDYMLQETFRTRYPSVKGAKVVTDANTGRSKGYGFVRFGDEMERN 192
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 193 RAMSEMNGIYCSSRPMRIS 211
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L F H GE+ SVKI K G GFV+F + AE LQ
Sbjct: 44 TLWVGDLQYWMDENYLHTAFVHTGEVQSVKIIRNKQTGYSEGYGFVEFVSHVAAEKILQA 103
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +Q RL+W
Sbjct: 104 YNGTQMPNTEQPFRLNWA 121
>gi|242062048|ref|XP_002452313.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
gi|241932144|gb|EES05289.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
Length = 435
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 109/180 (60%), Gaps = 36/180 (20%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L E FS AKV ID+NTG ++GYGFVRFGD+N+++ AM EMNG
Sbjct: 212 DVTDEMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGVYCST 271
Query: 56 ------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
SD S N T++VG LD NVS+ +LR+ F+ +G++ S
Sbjct: 272 RPIRVGPATPRRSQGDSGSSPPRQSDVDSTNRTVYVGGLDPNVSEDELRKAFAKYGDLAS 331
Query: 92 VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNG 151
VKIP GK CGFVQF NR DAE ALQ L G IGKQ VRLSWG +P +KQ RGD + NG
Sbjct: 332 VKIPFGKQCGFVQFVNRADAEEALQGLNGATIGKQAVRLSWGRSPASKQSRGDSGHRRNG 391
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + ++G ++GYGFV F +A+ +G S G+
Sbjct: 139 KVIRNRHSGVSEGYGFVEFYSHVSAEKALQNFSGHVMPNTDRAFKLNWASYSMGEKRTEL 198
Query: 60 SNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKDAE 112
S++ +IFVG L +V+D+ L ELFS+ + + K+ + +G GFV+F + D
Sbjct: 199 SSDHSIFVGDLAVDVTDEMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKT 258
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 259 HAMTEMNGVYCSTRPIRV 276
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVA 114
+N TI+VG L + + L F GE++++K+ V +G GFV+F + AE A
Sbjct: 107 DNRTIWVGDLQYWMDENYLHSCFGPSGEVVNIKVIRNRHSGVSEGYGFVEFYSHVSAEKA 166
Query: 115 LQKLQGTAIGK--QTVRLSWG 133
LQ G + + +L+W
Sbjct: 167 LQNFSGHVMPNTDRAFKLNWA 187
>gi|218193173|gb|EEC75600.1| hypothetical protein OsI_12307 [Oryza sativa Indica Group]
Length = 406
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 114/193 (59%), Gaps = 44/193 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+ ILQ+TF AKV D +TG +KGYGFV+FGD +E++RAM EMNG
Sbjct: 168 ASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNGQYC 227
Query: 56 ---------------------------------SDGKSNNATIFVGALDSNVSDKDLREL 82
SD NN T+FVG LD +V+D+ L++
Sbjct: 228 SSRPMRIGPASNKKNIGGQQQPSATYQNTQGTDSDSDPNNTTVFVGGLDPSVTDEVLKQA 287
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
FS +GE++ VKIPVGK CGFVQ++NR AE A++ L G+ +G Q++RLSWG +PGNKQ +
Sbjct: 288 FSPYGELVYVKIPVGKRCGFVQYSNRASAEEAIRMLNGSQLGGQSIRLSWGRSPGNKQPQ 347
Query: 143 GDHINHWNGAHYG 155
D N WN +YG
Sbjct: 348 QDQ-NQWNAGYYG 359
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 33/146 (22%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDE------------------------NERSRAMIEMNGS 56
AK+ + TG +GYGF+ FG N + E G
Sbjct: 96 AKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGYNGQMMPNGNQVFKLNWATSGAGEKRGD 155
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
DG ++ TIFVG L S+V+D L++ F +H+ + K+ KG GFV+F +
Sbjct: 156 DG--SDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLD 213
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHN 135
+ A+ ++ G + +R+ N
Sbjct: 214 EQTRAMTEMNGQYCSSRPMRIGPASN 239
>gi|108709398|gb|ABF97193.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 406
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 114/193 (59%), Gaps = 44/193 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+ ILQ+TF AKV D +TG +KGYGFV+FGD +E++RAM EMNG
Sbjct: 168 ASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNGQYC 227
Query: 56 ---------------------------------SDGKSNNATIFVGALDSNVSDKDLREL 82
SD NN T+FVG LD +V+D+ L++
Sbjct: 228 SSRPMRIGPASNKKNIGGQQQPSATYQNTQGTDSDSDPNNTTVFVGGLDPSVTDEVLKQA 287
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
FS +GE++ VKIPVGK CGFVQ++NR AE A++ L G+ +G Q++RLSWG +PGNKQ +
Sbjct: 288 FSPYGELVYVKIPVGKRCGFVQYSNRASAEEAIRMLNGSQLGGQSIRLSWGRSPGNKQPQ 347
Query: 143 GDHINHWNGAHYG 155
D N WN +YG
Sbjct: 348 QDQ-NQWNAGYYG 359
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 33/146 (22%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDE------------------------NERSRAMIEMNGS 56
AK+ + TG +GYGF+ FG N + E G
Sbjct: 96 AKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGYNGQMMPNGNQVFKLNWATSGAGEKRGD 155
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
DG ++ TIFVG L S+V+D L++ F +H+ + K+ KG GFV+F +
Sbjct: 156 DG--SDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLD 213
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHN 135
+ A+ ++ G + +R+ N
Sbjct: 214 EQTRAMTEMNGQYCSSRPMRIGPASN 239
>gi|302784144|ref|XP_002973844.1| hypothetical protein SELMODRAFT_100454 [Selaginella moellendorffii]
gi|302803590|ref|XP_002983548.1| hypothetical protein SELMODRAFT_118305 [Selaginella moellendorffii]
gi|300148791|gb|EFJ15449.1| hypothetical protein SELMODRAFT_118305 [Selaginella moellendorffii]
gi|300158176|gb|EFJ24799.1| hypothetical protein SELMODRAFT_100454 [Selaginella moellendorffii]
Length = 350
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 106/187 (56%), Gaps = 42/187 (22%)
Query: 6 VSDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF SR AKV +D+ T +KGYGFVRFGDE E+ RAM EM G
Sbjct: 122 APDVTDYMLQETFQSRYSSVKGAKVVMDTTTARSKGYGFVRFGDEAEKMRAMTEMAGVYC 181
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+D +N T+FVG LD +V D+DL+++F
Sbjct: 182 STRPMRISTATPKKSLATIPPKGFQNFGVPPLTDNDPSNTTVFVGGLDHSVKDEDLKQVF 241
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
S FG+I VKIP GK CGFVQF R AE ALQKL G+ IG+QT+RLSWG +P NKQ
Sbjct: 242 SQFGDIQYVKIPAGKNCGFVQFYTRASAEEALQKLHGSTIGQQTIRLSWGRSPANKQQVQ 301
Query: 144 DHINHWN 150
N WN
Sbjct: 302 PEFNQWN 308
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 29/140 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA----------------- 63
AKV + TG+++GYGFV F + + + + NG+ S +
Sbjct: 50 AKVIRNKQTGYSEGYGFVEFTNHSTAEKVLQSFNGTQMPSTDIAFRLNWACFGIGERRPD 109
Query: 64 -----TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+IFVG L +V+D L+E F S + + K+ + KG GFV+F + +
Sbjct: 110 QGPDFSIFVGDLAPDVTDYMLQETFQSRYSSVKGAKVVMDTTTARSKGYGFVRFGDEAEK 169
Query: 112 EVALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 170 MRAMTEMAGVYCSTRPMRIS 189
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L F+H E+ K+ K G GFV+F N AE LQ
Sbjct: 22 TLWVGDLQYWMDEGYLYSCFAHTSEVQVAKVIRNKQTGYSEGYGFVEFTNHSTAEKVLQS 81
Query: 118 LQGTAIGKQTV--RLSWG 133
GT + + RL+W
Sbjct: 82 FNGTQMPSTDIAFRLNWA 99
>gi|12583812|gb|AAG59664.1|AC084319_22 putative RNA binding protein [Oryza sativa Japonica Group]
gi|108709397|gb|ABF97192.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215678704|dbj|BAG95141.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 402
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 114/193 (59%), Gaps = 44/193 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+ ILQ+TF AKV D +TG +KGYGFV+FGD +E++RAM EMNG
Sbjct: 168 ASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNGQYC 227
Query: 56 ---------------------------------SDGKSNNATIFVGALDSNVSDKDLREL 82
SD NN T+FVG LD +V+D+ L++
Sbjct: 228 SSRPMRIGPASNKKNIGGQQQPSATYQNTQGTDSDSDPNNTTVFVGGLDPSVTDEVLKQA 287
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
FS +GE++ VKIPVGK CGFVQ++NR AE A++ L G+ +G Q++RLSWG +PGNKQ +
Sbjct: 288 FSPYGELVYVKIPVGKRCGFVQYSNRASAEEAIRMLNGSQLGGQSIRLSWGRSPGNKQPQ 347
Query: 143 GDHINHWNGAHYG 155
D N WN +YG
Sbjct: 348 QDQ-NQWNAGYYG 359
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 33/146 (22%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDE------------------------NERSRAMIEMNGS 56
AK+ + TG +GYGF+ FG N + E G
Sbjct: 96 AKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGYNGQMMPNGNQVFKLNWATSGAGEKRGD 155
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
DG ++ TIFVG L S+V+D L++ F +H+ + K+ KG GFV+F +
Sbjct: 156 DG--SDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLD 213
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHN 135
+ A+ ++ G + +R+ N
Sbjct: 214 EQTRAMTEMNGQYCSSRPMRIGPASN 239
>gi|115453831|ref|NP_001050516.1| Os03g0569900 [Oryza sativa Japonica Group]
gi|113548987|dbj|BAF12430.1| Os03g0569900, partial [Oryza sativa Japonica Group]
Length = 446
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 114/193 (59%), Gaps = 44/193 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+ ILQ+TF AKV D +TG +KGYGFV+FGD +E++RAM EMNG
Sbjct: 212 ASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNGQYC 271
Query: 56 ---------------------------------SDGKSNNATIFVGALDSNVSDKDLREL 82
SD NN T+FVG LD +V+D+ L++
Sbjct: 272 SSRPMRIGPASNKKNIGGQQQPSATYQNTQGTDSDSDPNNTTVFVGGLDPSVTDEVLKQA 331
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
FS +GE++ VKIPVGK CGFVQ++NR AE A++ L G+ +G Q++RLSWG +PGNKQ +
Sbjct: 332 FSPYGELVYVKIPVGKRCGFVQYSNRASAEEAIRMLNGSQLGGQSIRLSWGRSPGNKQPQ 391
Query: 143 GDHINHWNGAHYG 155
D N WN +YG
Sbjct: 392 QDQ-NQWNAGYYG 403
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 33/146 (22%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDE------------------------NERSRAMIEMNGS 56
AK+ + TG +GYGF+ FG N + E G
Sbjct: 140 AKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGYNGQMMPNGNQVFKLNWATSGAGEKRGD 199
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
DG ++ TIFVG L S+V+D L++ F +H+ + K+ KG GFV+F +
Sbjct: 200 DG--SDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLD 257
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHN 135
+ A+ ++ G + +R+ N
Sbjct: 258 EQTRAMTEMNGQYCSSRPMRIGPASN 283
>gi|147859325|emb|CAN83958.1| hypothetical protein VITISV_039907 [Vitis vinifera]
Length = 410
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/182 (48%), Positives = 106/182 (58%), Gaps = 38/182 (20%)
Query: 6 VSDITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+ +LQETF AKV D TG +KGYGFVRFGDE E+ RAM EMNG
Sbjct: 176 ASDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFGDEGEQLRAMNEMNGMFC 235
Query: 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
+ NN TIFVG LDSNV+D LR++FS +GE
Sbjct: 236 STRPMRIGPAATKKPVGASFQNTQGXQGESDPNNTTIFVGGLDSNVTDDYLRQVFSQYGE 295
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
++ VKIPVGK CGFVQFANR AE AL L GT +G Q++RLSWG +P NKQ + D
Sbjct: 296 LVHVKIPVGKRCGFVQFANRACAEQALAGLNGTQLGAQSIRLSWGRSPSNKQAQPDQA-Q 354
Query: 149 WN 150
WN
Sbjct: 355 WN 356
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS----------------------DGK 59
KV + TG +GYGF+ R + NG+
Sbjct: 105 KVIRNKQTGQCEGYGFIELATRAAAERILQTYNGTLMPNSEQNFRLNWATLGAGERRADD 164
Query: 60 SNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+ + TIFVG L S+V+D L+E F H+ + K+ KG GFV+F + +
Sbjct: 165 TPDYTIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFGDEGEQL 224
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 225 RAMNEMNGMFCSTRPMRI 242
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
++++G L + + FS GE++SVK+ K G GF++ A R AE LQ
Sbjct: 76 SLWIGDLQPWMEENYXWGCFSQTGEVVSVKVIRNKQTGQCEGYGFIELATRAAAERILQT 135
Query: 118 LQGTAI--GKQTVRLSWG 133
GT + +Q RL+W
Sbjct: 136 YNGTLMPNSEQNFRLNWA 153
>gi|222623094|gb|EEE57226.1| hypothetical protein OsJ_07197 [Oryza sativa Japonica Group]
Length = 459
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 114/206 (55%), Gaps = 58/206 (28%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L + F++ AKV ID+NTG ++GYGFVRFGD+N+++ AM EMNG
Sbjct: 218 DVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCST 277
Query: 56 ----------------------------------------------SDGKSNNATIFVGA 69
SD S N TI+VG
Sbjct: 278 RPIRIGPATPRDLQPTSASAYGLVAKARANIWGEYVGDSGSSPPRQSDSDSTNRTIYVGG 337
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129
LD N ++ +LR+ F+ +G++ SVKIPVGK CGFVQF NR DAE ALQ L G+ IGKQ VR
Sbjct: 338 LDPNATEDELRKAFAKYGDLASVKIPVGKQCGFVQFVNRPDAEEALQGLNGSTIGKQAVR 397
Query: 130 LSWGHNPGNKQWRGDHINHWNGAHYG 155
LSWG +P +KQ RGD + NG +YG
Sbjct: 398 LSWGRSPASKQSRGDSGHRRNGMYYG 423
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 29/152 (19%)
Query: 8 DITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------ 55
D NS+ KV + ++G ++GYGFV F +A+ +G
Sbjct: 131 DPNNSVFWGKVVTIKVIRNRHSGVSEGYGFVEFFSHASAEKALQNFSGHVMPNTDRAFKL 190
Query: 56 -----SDGK-----SNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GK 98
S G+ +++ +IFVG L +V+D+ L +LF+ + + K+ + +
Sbjct: 191 NWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSR 250
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
G GFV+F + D A+ ++ G + +R+
Sbjct: 251 GYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRI 282
>gi|225461001|ref|XP_002280601.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Vitis vinifera]
Length = 417
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 106/188 (56%), Gaps = 44/188 (23%)
Query: 6 VSDITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+ +LQETF AKV D TG +KGYGFVRFGDE E+ RAM EMNG
Sbjct: 191 ASDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFGDEGEQLRAMNEMNGMFC 250
Query: 56 ---------------------------------SDGKSNNATIFVGALDSNVSDKDLREL 82
+ NN TIFVG LDSNV+D LR++
Sbjct: 251 STRPMRIGPAATKKPVGGQQFQKASFQNTQGNQGESDPNNTTIFVGGLDSNVTDDYLRQV 310
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
FS +GE++ VKIPVGK CGFVQFANR AE AL L GT +G Q++RLSWG +P NKQ +
Sbjct: 311 FSQYGELVHVKIPVGKRCGFVQFANRACAEQALAGLNGTQLGAQSIRLSWGRSPSNKQAQ 370
Query: 143 GDHINHWN 150
D WN
Sbjct: 371 PDQA-QWN 377
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS----------------------DGK 59
KV + TG +GYGF+ R + NG+
Sbjct: 120 KVIRNKQTGQCEGYGFIELATRAAAERILQTYNGTLMPNSEQNFRLNWATLGAGERRADD 179
Query: 60 SNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+ + TIFVG L S+V+D L+E F H+ + K+ KG GFV+F + +
Sbjct: 180 TPDYTIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFGDEGEQL 239
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 240 RAMNEMNGMFCSTRPMRI 257
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
++++G L + + L FS GE++SVK+ K G GF++ A R AE LQ
Sbjct: 91 SLWIGDLQPWMEENYLWGCFSQTGEVVSVKVIRNKQTGQCEGYGFIELATRAAAERILQT 150
Query: 118 LQGTAI--GKQTVRLSWG 133
GT + +Q RL+W
Sbjct: 151 YNGTLMPNSEQNFRLNWA 168
>gi|449454730|ref|XP_004145107.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
gi|449472157|ref|XP_004153511.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
Length = 408
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 109/186 (58%), Gaps = 44/186 (23%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +LQETF AKV ID TG TKGYGFV+FGDE+E+ RAM EMNG
Sbjct: 167 DVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSS 226
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
++ NN TIFVG LDSNV+D+ LR++FS
Sbjct: 227 RPMRIGPAANKNTSGSQQFSKTSYQNPPGTQNENDPNNTTIFVGNLDSNVTDEHLRQVFS 286
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
+GE++ VKIP GK CGFVQF++R AE AL+ L GT IG Q +RLSWG +P NKQ + D
Sbjct: 287 QYGELVHVKIPAGKRCGFVQFSDRSCAEEALRILNGTPIGGQNIRLSWGRSPSNKQPQAD 346
Query: 145 HINHWN 150
N WN
Sbjct: 347 P-NQWN 351
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 27/144 (18%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------------------DG 58
S KV + TG ++GYGF+ F R + NG+
Sbjct: 93 SSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTYNGTAMPNGAQNFRLNWASAGEKRQD 152
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDA 111
S + TIFVG L +V+D L+E F + + + K+ + KG GFV+F + +
Sbjct: 153 DSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ 212
Query: 112 EVALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 213 IRAMTEMNGVHCSSRPMRIGPAAN 236
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + + F+H GE+ SVK+ K G GF++F R AE LQ
Sbjct: 67 TLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQT 126
Query: 118 LQGTAI--GKQTVRLSWG 133
GTA+ G Q RL+W
Sbjct: 127 YNGTAMPNGAQNFRLNWA 144
>gi|375152130|gb|AFA36523.1| nucleic acid binding protein, partial [Lolium perenne]
Length = 164
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 101/158 (63%), Gaps = 28/158 (17%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
AKV ID+NTG ++GYGFVRF D+N++S AM EMNG
Sbjct: 6 AKVIIDANTGRSRGYGFVRFADDNDKSHAMTEMNGIYCSTRPIRIGPATPRRTGDSGSST 65
Query: 56 ---SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAE 112
SDG S N T++VG LD NVS+ +LR+ F+ +G++ SVKIP+GK CGFVQ+ NR DA+
Sbjct: 66 PGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGKQCGFVQYVNRTDAK 125
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
ALQ L G+ IGKQ VRLSWG +P +KQ RGD N N
Sbjct: 126 EALQGLNGSVIGKQVVRLSWGRSPSHKQSRGDSGNRRN 163
>gi|168049769|ref|XP_001777334.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061528|ref|XP_001782740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665773|gb|EDQ52446.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671310|gb|EDQ57864.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 416
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 108/215 (50%), Gaps = 67/215 (31%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
D+T+ +LQETF AKV D+NTG +KGYGFVRFGDE ER+RAM EMNG
Sbjct: 109 APDVTDYMLQETFRTRYPSVKGAKVVTDANTGRSKGYGFVRFGDEMERNRAMSEMNGVYC 168
Query: 57 --------------------------------------------------DGKSNNATIF 66
D NN TIF
Sbjct: 169 SSRPMRISAATPKKSLGPAQLNPKVDAVSPVAVATYAAYGAQPSPQAFPVDNDPNNTTIF 228
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
VG LD V D+DLR +F FGE++ VKIP GKGCGFVQF +R AE ALQ+L T IG Q
Sbjct: 229 VGGLDPAVGDEDLRNVFGQFGELVYVKIPAGKGCGFVQFTHRACAEEALQRLHQTVIGTQ 288
Query: 127 TVRLSWGHNPGNKQ-----WRGDH--INHWNGAHY 154
VRLSWG +PGNKQ W G H N WN Y
Sbjct: 289 AVRLSWGRSPGNKQTADPGW-GQHQDPNQWNAGGY 322
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA------------------ 63
K+ + TG+++GYGFV F + + NG+ +
Sbjct: 38 KIIRNKQTGYSEGYGFVEFVSHAAAEKILQAYNGTQMPNTEQPFRLNWASFGIGERRPEA 97
Query: 64 ----TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+IFVG L +V+D L+E F + + + K+ KG GFV+F + +
Sbjct: 98 GPEHSIFVGDLAPDVTDYMLQETFRTRYPSVKGAKVVTDANTGRSKGYGFVRFGDEMERN 157
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 158 RAMSEMNGVYCSSRPMRIS 176
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L F H GE+ SVKI K G GFV+F + AE LQ
Sbjct: 9 TLWVGDLQYWMDENYLHTAFVHTGEVQSVKIIRNKQTGYSEGYGFVEFVSHAAAEKILQA 68
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +Q RL+W
Sbjct: 69 YNGTQMPNTEQPFRLNWA 86
>gi|359478387|ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Vitis vinifera]
Length = 438
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 110/204 (53%), Gaps = 57/204 (27%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF AKV D NTG TKGYGFV+F DE ER+RAM EMNG
Sbjct: 142 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYC 201
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
+D NN TIFVG LD
Sbjct: 202 STRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLD 261
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
NV++++L+++FS FGE++ VKIP G+GCGFVQF R AE A+Q++QGT IG+ VR+S
Sbjct: 262 PNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRIS 321
Query: 132 WGHNPGNKQWRGDHINHWNGAHYG 155
WG +P KQ + W+ A+YG
Sbjct: 322 WGRSPTAKQ---ADPSQWSSAYYG 342
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L F+H GE++S+KI K G GFV+F + AE LQ
Sbjct: 42 TLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQA 101
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +QT RL+W
Sbjct: 102 YNGTQMPGTEQTFRLNWA 119
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + TG +GYGFV F R + NG+ T
Sbjct: 71 KIIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDA 130
Query: 65 -----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F + + + K+ KG GFV+F++ +
Sbjct: 131 GPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERN 190
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 191 RAMTEMNGVYCSTRPMRIS 209
>gi|449454734|ref|XP_004145109.1| PREDICTED: polyadenylate-binding protein RBP45B-like [Cucumis
sativus]
Length = 404
Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 109/186 (58%), Gaps = 44/186 (23%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +LQETF AKV ID TG TKGYGFV+FGDE+E+ RAM EMNG
Sbjct: 167 DVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSS 226
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
++ NN TIFVG LD+NV+D+ LR++F
Sbjct: 227 RPMRIGPAANKNTSGGQQFSKTSYQNPQGAQNENDPNNTTIFVGNLDANVTDEHLRQVFG 286
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
+GE++ VKIPVGK CGFVQFA+R AE AL+ L GT IG Q +RLSWG +P NKQ + D
Sbjct: 287 QYGELVHVKIPVGKRCGFVQFADRNCAEEALRVLNGTQIGGQNIRLSWGRSPSNKQPQAD 346
Query: 145 HINHWN 150
N WN
Sbjct: 347 P-NQWN 351
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 27/144 (18%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------------------DG 58
S KV + TG ++GYGF+ F R + NG+
Sbjct: 93 SSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTYNGTAMPNGAQNFRLNWASAGEKRQD 152
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDA 111
S + TIFVG L +V+D L+E F + + + K+ + KG GFV+F + +
Sbjct: 153 DSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ 212
Query: 112 EVALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 213 MRAMTEMNGVHCSSRPMRIGPAAN 236
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + + F+H GE+ SVK+ K G GF++F R AE LQ
Sbjct: 67 TLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQT 126
Query: 118 LQGTAI--GKQTVRLSWG 133
GTA+ G Q RL+W
Sbjct: 127 YNGTAMPNGAQNFRLNWA 144
>gi|357166074|ref|XP_003580589.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Brachypodium distachyon]
Length = 426
Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 101/176 (57%), Gaps = 41/176 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ ILQETF AKV D T +KGYGFV+FGD E++RAM EMNG
Sbjct: 186 AADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPC 245
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
SD NN TIFVG LD NV++ L+++F+
Sbjct: 246 SSRPMRIGPAANRKTTGVQERVPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFA 305
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+GE++ VKIPVGK CGFVQF NR AE ALQ LQGT IG Q VRLSWG +P NKQ
Sbjct: 306 PYGEVIHVKIPVGKRCGFVQFVNRPSAEQALQMLQGTPIGGQNVRLSWGRSPSNKQ 361
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 26/140 (18%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D TG +GYGFV F R + NG S G+ + +
Sbjct: 118 KLIRDKQTGQLQGYGFVEFTSHAAAERVLQGYNGHAMPNVDLAYRLNWASAGEKRDDTPD 177
Query: 63 ATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A+
Sbjct: 178 YTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 237
Query: 116 QKLQGTAIGKQTVRLSWGHN 135
++ G + +R+ N
Sbjct: 238 TEMNGMPCSSRPMRIGPAAN 257
>gi|224078632|ref|XP_002305583.1| predicted protein [Populus trichocarpa]
gi|222848547|gb|EEE86094.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 103/181 (56%), Gaps = 42/181 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
+D+T+ +LQETF AKV ID TG TKGYGFVRFGDE+E+ RAM EMNG+
Sbjct: 150 AADVTDFMLQETFRAHFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGAFC 209
Query: 57 ---------------------------------DGKSNNATIFVGALDSNVSDKDLRELF 83
DG NN TIFVG LDSNV D L+ELF
Sbjct: 210 STRPMRVGLASNKKAVVGQQYPKASYQNPQPQNDGDPNNTTIFVGNLDSNVMDDHLKELF 269
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
+G++L VKIP GK CGFVQFA+R AE AL+ L G + Q +RLSWG NP NKQ +
Sbjct: 270 GQYGQLLHVKIPAGKRCGFVQFADRSSAEEALKMLNGAQLSGQNIRLSWGRNPSNKQAQP 329
Query: 144 D 144
D
Sbjct: 330 D 330
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 28/142 (19%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---DGKSN----------------- 61
K+ + T +GYGF+ R + NG+ +G+ N
Sbjct: 80 KIIRNKQTSQIEGYGFIEMTSHGAAERILQTYNGTPMPNGEQNFRLNWASFSGGDKRDDS 139
Query: 62 -NATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDAEV 113
+ TIFVG L ++V+D L+E F +HF + K+ + KG GFV+F + +
Sbjct: 140 PDFTIFVGDLAADVTDFMLQETFRAHFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 199
Query: 114 ALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 200 AMTEMNGAFCSTRPMRVGLASN 221
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + + F+H GE+ SVKI K G GF++ + AE LQ
Sbjct: 51 TLWIGDLQYWMDENYIASCFAHTGEVASVKIIRNKQTSQIEGYGFIEMTSHGAAERILQT 110
Query: 118 LQGTAI--GKQTVRLSWG 133
GT + G+Q RL+W
Sbjct: 111 YNGTPMPNGEQNFRLNWA 128
>gi|413921124|gb|AFW61056.1| hypothetical protein ZEAMMB73_234884 [Zea mays]
Length = 453
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 108/188 (57%), Gaps = 40/188 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV D T TKGYGFV+FGD NE++RAM EMNG
Sbjct: 209 AADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNEQARAMTEMNGMLC 268
Query: 56 -----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHF 86
SD NN TIFVG LD NV++ L+++F+ +
Sbjct: 269 SSRPMRIGPAANKKATVVQEKVPSAQGVQSDNDPNNTTIFVGGLDPNVTEDMLKQVFTPY 328
Query: 87 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH- 145
G+++ VKIPVGK CGFVQ+ANR AE AL LQGT +G Q VRLSWG +P NKQ +
Sbjct: 329 GDVVHVKIPVGKRCGFVQYANRSSAEEALVILQGTLVGGQNVRLSWGRSPSNKQVQPQQD 388
Query: 146 INHWNGAH 153
N W GA+
Sbjct: 389 SNQWAGAN 396
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 26/140 (18%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D +TG +GYGF+ F R + NG S G+ + +
Sbjct: 141 KLIRDKHTGQLQGYGFIEFISRAAAERVLQTYNGTMMPNVELPFRLNWASAGEKRDDTPD 200
Query: 63 ATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F +H+ + K+ KG GFV+F + + A+
Sbjct: 201 YTIFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNEQARAM 260
Query: 116 QKLQGTAIGKQTVRLSWGHN 135
++ G + +R+ N
Sbjct: 261 TEMNGMLCSSRPMRIGPAAN 280
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G S T+++G L + D + F+ GE+ +VK+ K G GF++F +R A
Sbjct: 106 GPSEVRTLWIGDLQYWMDDNYIYGCFASTGEVQNVKLIRDKHTGQLQGYGFIEFISRAAA 165
Query: 112 EVALQKLQGTAIG--KQTVRLSWG 133
E LQ GT + + RL+W
Sbjct: 166 ERVLQTYNGTMMPNVELPFRLNWA 189
>gi|194702946|gb|ACF85557.1| unknown [Zea mays]
gi|413921126|gb|AFW61058.1| hypothetical protein ZEAMMB73_234884 [Zea mays]
Length = 456
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 108/188 (57%), Gaps = 40/188 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV D T TKGYGFV+FGD NE++RAM EMNG
Sbjct: 219 AADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNEQARAMTEMNGMLC 278
Query: 56 -----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHF 86
SD NN TIFVG LD NV++ L+++F+ +
Sbjct: 279 SSRPMRIGPAANKKATVVQEKVPSAQGVQSDNDPNNTTIFVGGLDPNVTEDMLKQVFTPY 338
Query: 87 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH- 145
G+++ VKIPVGK CGFVQ+ANR AE AL LQGT +G Q VRLSWG +P NKQ +
Sbjct: 339 GDVVHVKIPVGKRCGFVQYANRSSAEEALVILQGTLVGGQNVRLSWGRSPSNKQVQPQQD 398
Query: 146 INHWNGAH 153
N W GA+
Sbjct: 399 SNQWAGAN 406
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 26/140 (18%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D +TG +GYGF+ F R + NG S G+ + +
Sbjct: 151 KLIRDKHTGQLQGYGFIEFISRAAAERVLQTYNGTMMPNVELPFRLNWASAGEKRDDTPD 210
Query: 63 ATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F +H+ + K+ KG GFV+F + + A+
Sbjct: 211 YTIFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNEQARAM 270
Query: 116 QKLQGTAIGKQTVRLSWGHN 135
++ G + +R+ N
Sbjct: 271 TEMNGMLCSSRPMRIGPAAN 290
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G S T+++G L + D + F+ GE+ +VK+ K G GF++F +R A
Sbjct: 116 GPSEVRTLWIGDLQYWMDDNYIYGCFASTGEVQNVKLIRDKHTGQLQGYGFIEFISRAAA 175
Query: 112 EVALQKLQGTAIG--KQTVRLSWG 133
E LQ GT + + RL+W
Sbjct: 176 ERVLQTYNGTMMPNVELPFRLNWA 199
>gi|326513006|dbj|BAK03410.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525779|dbj|BAJ88936.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 436
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 104/187 (55%), Gaps = 43/187 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV D T +KGYGFV+FGD E++RAM EMNG
Sbjct: 189 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPC 248
Query: 56 ---------------------------------SDGKSNNATIFVGALDSNVSDKDLREL 82
SD NN TIFVG LD NV++ L+++
Sbjct: 249 SSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQV 308
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
F+ +GE++ VKIPVGK CGFVQ+ANR AE ALQ LQGT +G Q VRLSWG +P NKQ +
Sbjct: 309 FAPYGEVVHVKIPVGKRCGFVQYANRPSAEQALQLLQGTLVGGQNVRLSWGRSPSNKQTQ 368
Query: 143 GDHINHW 149
W
Sbjct: 369 PQEATQW 375
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 26/144 (18%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK--- 59
F K+ D TG +GYGFV F R + NG S G+
Sbjct: 117 FQSVKLIRDKQTGQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRD 176
Query: 60 -SNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ + TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + +
Sbjct: 177 DTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQ 236
Query: 112 EVALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 237 ARAMTEMNGMPCSSRPMRIGPAAN 260
>gi|226504372|ref|NP_001141359.1| uncharacterized protein LOC100273450 [Zea mays]
gi|194704160|gb|ACF86164.1| unknown [Zea mays]
gi|413921127|gb|AFW61059.1| hypothetical protein ZEAMMB73_234884 [Zea mays]
Length = 453
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 108/187 (57%), Gaps = 41/187 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV D T TKGYGFV+FGD NE++RAM EMNG
Sbjct: 219 AADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNEQARAMTEMNGMLC 278
Query: 56 -----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHF 86
SD NN TIFVG LD NV++ L+++F+ +
Sbjct: 279 SSRPMRIGPAANKKATVVQEKVPSAQGVQSDNDPNNTTIFVGGLDPNVTEDMLKQVFTPY 338
Query: 87 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHI 146
G+++ VKIPVGK CGFVQ+ANR AE AL LQGT +G Q VRLSWG +P NKQ +
Sbjct: 339 GDVVHVKIPVGKRCGFVQYANRSSAEEALVILQGTLVGGQNVRLSWGRSPSNKQVQDS-- 396
Query: 147 NHWNGAH 153
N W GA+
Sbjct: 397 NQWAGAN 403
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 26/140 (18%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D +TG +GYGF+ F R + NG S G+ + +
Sbjct: 151 KLIRDKHTGQLQGYGFIEFISRAAAERVLQTYNGTMMPNVELPFRLNWASAGEKRDDTPD 210
Query: 63 ATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F +H+ + K+ KG GFV+F + + A+
Sbjct: 211 YTIFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNEQARAM 270
Query: 116 QKLQGTAIGKQTVRLSWGHN 135
++ G + +R+ N
Sbjct: 271 TEMNGMLCSSRPMRIGPAAN 290
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G S T+++G L + D + F+ GE+ +VK+ K G GF++F +R A
Sbjct: 116 GPSEVRTLWIGDLQYWMDDNYIYGCFASTGEVQNVKLIRDKHTGQLQGYGFIEFISRAAA 175
Query: 112 EVALQKLQGTAIG--KQTVRLSWG 133
E LQ GT + + RL+W
Sbjct: 176 ERVLQTYNGTMMPNVELPFRLNWA 199
>gi|356521983|ref|XP_003529629.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 397
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 107/187 (57%), Gaps = 43/187 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV ID TG TKGYGFVRFGDE+E+ RAM EM G
Sbjct: 162 AADVTDYLLQETFRARYPSIKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLC 221
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
++ NN TIFVG LD NV+D LR++F
Sbjct: 222 STRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVF 281
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
H+GE++ VKIP GK CGFVQFA+R AE AL+ L GT +G Q VRLSWG +P NKQ +
Sbjct: 282 GHYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQP 341
Query: 144 DHINHWN 150
D N WN
Sbjct: 342 D-ANQWN 347
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 29/143 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + T ++GYGF+ F R + NG S G+
Sbjct: 91 KVIRNKQTSQSEGYGFIEFTSRAGAERVLQTYNGTIMPNGGQNFRLNWATLSAGERRHDD 150
Query: 60 SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDAE 112
S + TIFVG L ++V+D L+E F + + I K+ + KG GFV+F + +
Sbjct: 151 SPDHTIFVGDLAADVTDYLLQETFRARYPSIKGAKVVIDRLTGRTKGYGFVRFGDESEQV 210
Query: 113 VALQKLQGTAIGKQTVRLSWGHN 135
A+ ++QG + +R+ N
Sbjct: 211 RAMTEMQGVLCSTRPMRIGPASN 233
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L +H GE+ SVK+ K G GF++F +R AE LQ
Sbjct: 62 TLWIGDLQYWMDENYLYTCLAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQT 121
Query: 118 LQGTAI--GKQTVRLSWG 133
GT + G Q RL+W
Sbjct: 122 YNGTIMPNGGQNFRLNWA 139
>gi|255563907|ref|XP_002522953.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223537765|gb|EEF39383.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 404
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 105/187 (56%), Gaps = 43/187 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
D+ + ILQETF AKV D TG TKGYGFVRFGDENE+ RAM+EMNG
Sbjct: 167 APDVNDFILQETFRTVYPSVKGAKVVTDRLTGRTKGYGFVRFGDENEQRRAMVEMNGQYC 226
Query: 57 ---------------------------------DGKSNNATIFVGALDSNVSDKDLRELF 83
+ NN TIFVGALD +VSD+ LR++F
Sbjct: 227 STRAMRIGPAATKKPAVQQYQKAPYQSTQGTQGENDPNNTTIFVGALDPSVSDEHLRQVF 286
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
+GE++ VKIP GK CGFVQFANR AE AL L GT + Q++RLSWG +P NKQ +
Sbjct: 287 GKYGELVHVKIPAGKRCGFVQFANRACAEQALLGLNGTQLAGQSIRLSWGRSPSNKQAQP 346
Query: 144 DHINHWN 150
D + WN
Sbjct: 347 DQ-SQWN 352
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQK 117
++++G L + + L +FS GE++S K+ + +G GF++F NR AE LQ
Sbjct: 67 SLWIGDLQQWMDEGYLFNIFSGTGEVVSAKVIRNKQTGMPEGYGFIEFINRAAAERILQT 126
Query: 118 LQGTAIG--KQTVRLSW 132
GT + +Q RL+W
Sbjct: 127 YNGTQMPNTEQNFRLNW 143
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN------------------- 61
AKV + TG +GYGF+ F + R + NG+ +
Sbjct: 95 AKVIRNKQTGMPEGYGFIEFINRAAAERILQTYNGTQMPNTEQNFRLNWATLAAGERRQD 154
Query: 62 ---NATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDA 111
+ T+FVG L +V+D L+E F + + + K+ KG GFV+F + +
Sbjct: 155 DGPDYTVFVGDLAPDVNDFILQETFRTVYPSVKGAKVVTDRLTGRTKGYGFVRFGDENEQ 214
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 215 RRAMVEMNGQYCSTRAMRI 233
>gi|297746331|emb|CBI16387.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 112/210 (53%), Gaps = 60/210 (28%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF AKV D NTG TKGYGFV+F DE ER+RAM EMNG
Sbjct: 142 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYC 201
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
+D NN TIFVG LD
Sbjct: 202 STRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLD 261
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
NV++++L+++FS FGE++ VKIP G+GCGFVQF R AE A+Q++QGT IG+ VR+S
Sbjct: 262 PNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRIS 321
Query: 132 WGHNPGNKQ-----W-RGDHINHWNGAHYG 155
WG +P KQ W + + W+ A+YG
Sbjct: 322 WGRSPTAKQDLPGSWGQQADPSQWSSAYYG 351
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L F+H GE++S+KI K G GFV+F + AE LQ
Sbjct: 42 TLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQA 101
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +QT RL+W
Sbjct: 102 YNGTQMPGTEQTFRLNWA 119
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + TG +GYGFV F R + NG+ T
Sbjct: 71 KIIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDA 130
Query: 65 -----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F + + + K+ KG GFV+F++ +
Sbjct: 131 GPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERN 190
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 191 RAMTEMNGVYCSTRPMRIS 209
>gi|30524689|emb|CAC85246.1| salt tolerance protein 6 [Beta vulgaris]
Length = 322
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 107/188 (56%), Gaps = 40/188 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ LQETF AKV ID T +KGYGFVRFGDE+E++RAM EMNG
Sbjct: 91 APDVTDYTLQETFRVRYPSVKGAKVVIDRLTSRSKGYGFVRFGDESEQARAMSEMNGMMC 150
Query: 56 -----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHF 86
+D +N TIFVG LDSNV+D+ LR+ FS +
Sbjct: 151 LGRAMRIGAAANKKSVGGTASYQNNQGTPNDSDPSNTTIFVGNLDSNVTDEHLRQTFSPY 210
Query: 87 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHI 146
GE++ VKIP GK CGFVQF NR AE AL+ L G +G + VRLSWG +P N+Q + D
Sbjct: 211 GELVHVKIPAGKQCGFVQFTNRSSAEEALRVLNGMQLGGRNVRLSWGRSPNNRQSQPDQ- 269
Query: 147 NHWNGAHY 154
N WN A Y
Sbjct: 270 NQWNNAAY 277
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 29/143 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAM----------IEMN--------GSDGK---- 59
K+ + T ++ YGF+ F R + +E N GS K
Sbjct: 20 KIIRNKQTMQSECYGFIEFSTHAAAERILQTYNNTLMPNVEQNYRLNWAFYGSGEKRGED 79
Query: 60 SNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+++ TIFVG L +V+D L+E F + + K+ + KG GFV+F + +
Sbjct: 80 ASDYTIFVGDLAPDVTDYTLQETFRVRYPSVKGAKVVIDRLTSRSKGYGFVRFGDESEQA 139
Query: 113 VALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 140 RAMSEMNGMMCLGRAMRIGAAAN 162
>gi|225435468|ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 447
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 112/210 (53%), Gaps = 60/210 (28%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF AKV D NTG TKGYGFV+F DE ER+RAM EMNG
Sbjct: 142 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYC 201
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
+D NN TIFVG LD
Sbjct: 202 STRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLD 261
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
NV++++L+++FS FGE++ VKIP G+GCGFVQF R AE A+Q++QGT IG+ VR+S
Sbjct: 262 PNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRIS 321
Query: 132 WGHNPGNKQ-----W-RGDHINHWNGAHYG 155
WG +P KQ W + + W+ A+YG
Sbjct: 322 WGRSPTAKQDLPGSWGQQADPSQWSSAYYG 351
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L F+H GE++S+KI K G GFV+F + AE LQ
Sbjct: 42 TLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQA 101
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +QT RL+W
Sbjct: 102 YNGTQMPGTEQTFRLNWA 119
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + TG +GYGFV F R + NG+ T
Sbjct: 71 KIIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDA 130
Query: 65 -----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F + + + K+ KG GFV+F++ +
Sbjct: 131 GPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERN 190
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 191 RAMTEMNGVYCSTRPMRIS 209
>gi|326528543|dbj|BAJ93453.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 416
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 104/188 (55%), Gaps = 53/188 (28%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DENE++RAM EMNG
Sbjct: 118 APDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKTRAMSEMNGVYC 177
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
D N TIF+G LD
Sbjct: 178 STRPMRISAAIPKKSSGSQLQYGAAKAMYPATAYAIPQAQTVLPDSDLTNTTIFIGNLDP 237
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
NV++++LR++ FGE++ VKIPVGKGCGFVQ+A+R AE A+Q+L GT IG+Q VRLSW
Sbjct: 238 NVTEEELRQICVQFGELIYVKIPVGKGCGFVQYASRASAEEAVQRLHGTVIGQQVVRLSW 297
Query: 133 GHNPGNKQ 140
G +P NKQ
Sbjct: 298 GRSPANKQ 305
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 29/132 (21%)
Query: 29 TGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------------IF 66
+G +GYGF+ F + + NG+ T IF
Sbjct: 54 SGLPEGYGFIEFISHEAAEKVLQAYNGAQMPGTELTFRLNWASFSSGEKRPDAGPDHSIF 113
Query: 67 VGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
VG L +V+D L+E F ++ + K+ KG GFV+FA+ + A+ ++
Sbjct: 114 VGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKTRAMSEMN 173
Query: 120 GTAIGKQTVRLS 131
G + +R+S
Sbjct: 174 GVYCSTRPMRIS 185
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQK 117
T+++G L + L F+H GE+ SVK+ + +G GF++F + + AE LQ
Sbjct: 18 TLWIGDLQYWADENYLYGCFAHTGEVQSVKLIRNKLSGLPEGYGFIEFISHEAAEKVLQA 77
Query: 118 LQGTAIG--KQTVRLSWG 133
G + + T RL+W
Sbjct: 78 YNGAQMPGTELTFRLNWA 95
>gi|224104133|ref|XP_002313332.1| predicted protein [Populus trichocarpa]
gi|222849740|gb|EEE87287.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 106/202 (52%), Gaps = 53/202 (26%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DENER+RAM EMNG
Sbjct: 121 APDVTDYLLQETFRVHYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMNGVFC 180
Query: 56 ------------------------------------------SDGKSNNATIFVGALDSN 73
+DG N TIFVG LD N
Sbjct: 181 STRPMRISMATPKKTTSFQQQYAVPKAFYPAPAYTAPVQVVSADGDVTNTTIFVGNLDPN 240
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+++DLR+ F GEI SVKIP G+GCGFVQFA R AE A+Q++QG IG+Q VR+SWG
Sbjct: 241 ATEEDLRQTFLQLGEIASVKIPAGRGCGFVQFATRTSAEEAIQRMQGHVIGQQPVRISWG 300
Query: 134 HNPGNKQWRGDHINHWNGAHYG 155
G ++ WN A+YG
Sbjct: 301 KKQDLTATWGQQVDQWN-AYYG 321
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + TG +GYGFV F R + NG+ T
Sbjct: 50 KIIRNKLTGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDA 109
Query: 65 -----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F H+ + K+ KG GFV+FA+ +
Sbjct: 110 GPEHSIFVGDLAPDVTDYLLQETFRVHYPSVRGAKVVTDPNTGRSKGYGFVKFADENERN 169
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 170 RAMTEMNGVFCSTRPMRIS 188
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + L F+H GE++S+KI K G GFV+F + AE LQ
Sbjct: 21 TLWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEGYGFVEFVSHAAAERILQT 80
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +QT RL+W
Sbjct: 81 YNGTQMPGTEQTFRLNWA 98
>gi|413922759|gb|AFW62691.1| hypothetical protein ZEAMMB73_026342 [Zea mays]
Length = 430
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 108/180 (60%), Gaps = 36/180 (20%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+++L E FS AKV ID+NTG ++GYGFVRFGD+N++ AM EMNG
Sbjct: 207 DVTDAMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKIHAMTEMNGVYCST 266
Query: 56 ------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
S S N T++VG LD NVS+ +LR+ F+ +G++ S
Sbjct: 267 RPIRVGPATPRRSQGDSGTSPPRQSHVDSTNRTVYVGGLDPNVSEDELRKAFAKYGDLAS 326
Query: 92 VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNG 151
VKIP GK CGFVQF NR DAE AL L G+ IGKQ VRLSWG +P +KQ RGD + NG
Sbjct: 327 VKIPFGKQCGFVQFVNRVDAEEALHGLNGSTIGKQAVRLSWGRSPASKQSRGDSGHRRNG 386
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 37/169 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + ++G ++GYGF+ F +A+ +G S G+
Sbjct: 134 KVIRNRHSGVSEGYGFIEFYTHVSAEKALQNFSGHVMPNTDRAFKLNWASYSMGEKRSEI 193
Query: 60 SNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKDAE 112
S++ +IFVG L +V+D L ELFS+ + + K+ + +G GFV+F + D
Sbjct: 194 SSDHSIFVGDLAVDVTDAMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKI 253
Query: 113 VALQKLQGTA-------IGKQTVRLSWGHNPGNKQWRGDHINHWNGAHY 154
A+ ++ G +G T R S G + G R H++ N Y
Sbjct: 254 HAMTEMNGVYCSTRPIRVGPATPRRSQGDS-GTSPPRQSHVDSTNRTVY 301
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFAN 107
+G +G +N TI+VG L + + L F GE++++K+ V +G GF++F
Sbjct: 95 SGGNGGEDNRTIWVGDLQYWMDENYLHSCFGSSGEVVNIKVIRNRHSGVSEGYGFIEFYT 154
Query: 108 RKDAEVALQKLQGTAIGK--QTVRLSW 132
AE ALQ G + + +L+W
Sbjct: 155 HVSAEKALQNFSGHVMPNTDRAFKLNW 181
>gi|357113824|ref|XP_003558701.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 418
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 103/188 (54%), Gaps = 53/188 (28%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DENE++RAM EMNG
Sbjct: 118 APDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKTRAMSEMNGVYC 177
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
D N TIF+G LD
Sbjct: 178 STRPMRISAAIPKKSSGSQLQYGTAKAMYPAAAYAVPQAQPALPDSDLTNTTIFIGNLDP 237
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
N ++++LR+L FGE++ VKIPVGKGCGFVQ+A+R AE A+Q+L GT IG+Q VRLSW
Sbjct: 238 NATEEELRQLCVQFGELIYVKIPVGKGCGFVQYASRASAEEAVQRLHGTMIGQQVVRLSW 297
Query: 133 GHNPGNKQ 140
G +P NKQ
Sbjct: 298 GRSPANKQ 305
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQK 117
T+++G L + L F+H GE+ SVKI + +G GF++F + + AE LQ
Sbjct: 18 TLWIGDLQFWADEAYLYNCFAHTGEVQSVKIIRNKVTNLPEGYGFIEFISHEAAEKVLQT 77
Query: 118 LQGTAI--GKQTVRLSWG 133
G + + T RL+W
Sbjct: 78 YNGAQMPGSEHTFRLNWA 95
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + T +GYGF+ F + + NG+ + T
Sbjct: 47 KIIRNKVTNLPEGYGFIEFISHEAAEKVLQTYNGAQMPGSEHTFRLNWASFSSGERRPDA 106
Query: 65 -----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F ++ + K+ KG GFV+FA+ +
Sbjct: 107 GPDHSIFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKT 166
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 167 RAMSEMNGVYCSTRPMRIS 185
>gi|449469386|ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP47B'-like [Cucumis
sativus]
Length = 422
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 111/207 (53%), Gaps = 60/207 (28%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DENER+RAM EMNG
Sbjct: 122 PDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCS 181
Query: 56 -----------------------------------------SDGKSNNATIFVGALDSNV 74
+D +NN TIFVG LD N+
Sbjct: 182 TRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNI 241
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++++L++ F FGEI VKIP GKGCGFVQF R AE A+QK+QG IG+Q VR SWG
Sbjct: 242 TEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGR 301
Query: 135 NPGNKQ----WRGDHI--NHWNGAHYG 155
NP KQ W G + N W+ A+YG
Sbjct: 302 NPAAKQDLTTW-GQQVDPNQWS-AYYG 326
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L F+H GE++S+KI K G GFV+F + AE LQ
Sbjct: 21 TLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQT 80
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +QT RL+W
Sbjct: 81 YNGTQMPGTEQTFRLNWA 98
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + TG +GYGFV F R + NG+ T
Sbjct: 50 KIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDA 109
Query: 65 -----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F + + + K+ KG GFV+FA+ +
Sbjct: 110 GPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERN 169
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 170 RAMSEMNGVYCSTRPMRIS 188
>gi|255544854|ref|XP_002513488.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223547396|gb|EEF48891.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 412
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 111/202 (54%), Gaps = 58/202 (28%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D NTG +KGYGFV+FGDENER+RAM EMNG
Sbjct: 124 PDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFGDENERNRAMTEMNGVFCS 183
Query: 56 -----------------------------------------SDGKSNNATIFVGALDSNV 74
+D N TIFVG LD NV
Sbjct: 184 TRPMRISAATPKKTAAYQQQYATAKAIYPLPAYTAPVQVVPADNDITNTTIFVGNLDPNV 243
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++++LR +F FGEI+ VKIPVG+GCGFVQFA R AE A+Q++QG IG+Q VR+SWG
Sbjct: 244 TEEELRPIFLQFGEIVYVKIPVGRGCGFVQFATRASAEEAIQRMQGHVIGQQPVRISWGR 303
Query: 135 NPGNKQWRGDHI-NHWNGAHYG 155
KQ R I + W+ A+YG
Sbjct: 304 ----KQARSTLILDQWS-AYYG 320
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L F+H GE+LS+KI K G GFV+F + AE LQ
Sbjct: 23 TLWIGDLQYWVDENYLSSCFAHTGEVLSIKIIRNKITGQPEGYGFVEFVSHVAAERILQT 82
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +QT RL+W
Sbjct: 83 YNGTQMPGTEQTFRLNWA 100
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + TG +GYGFV F R + NG+ T
Sbjct: 52 KIIRNKITGQPEGYGFVEFVSHVAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDA 111
Query: 65 -----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F +++ + K+ KG GFV+F + +
Sbjct: 112 GPEHSIFVGDLSPDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFGDENERN 171
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 172 RAMTEMNGVFCSTRPMRIS 190
>gi|356548971|ref|XP_003542872.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 409
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 106/189 (56%), Gaps = 45/189 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV ID TG TKGYGFVRF DE+E+ RAM EM G
Sbjct: 168 AADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSDESEQVRAMTEMQGVLC 227
Query: 56 ----------------------------------SDGKSNNATIFVGALDSNVSDKDLRE 81
++ NN TIFVG LD NV+D LR+
Sbjct: 228 STRPMRIGPASNKTPTTQSQPKASYQNSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQ 287
Query: 82 LFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQW 141
+FS +GE++ VKIP GK CGFVQFA+R AE AL+ L GT +G Q VRLSWG +P NKQ
Sbjct: 288 VFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQA 347
Query: 142 RGDHINHWN 150
+ D N WN
Sbjct: 348 QADP-NQWN 355
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 30/144 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + T ++GYGF+ F R + NG S G+
Sbjct: 96 KVIRNKQTSQSEGYGFIEFNSRAGAERILQTYNGAIMPNGGQSFRLNWATFSAGERSRHD 155
Query: 60 -SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDA 111
S + TIFVG L ++V+D L+E F + + + K+ + KG GFV+F++ +
Sbjct: 156 DSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSDESEQ 215
Query: 112 EVALQKLQGTAIGKQTVRLSWGHN 135
A+ ++QG + +R+ N
Sbjct: 216 VRAMTEMQGVLCSTRPMRIGPASN 239
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE+ SVK+ K G GF++F +R AE LQ
Sbjct: 67 TLWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQT 126
Query: 118 LQGTAI--GKQTVRLSWG 133
G + G Q+ RL+W
Sbjct: 127 YNGAIMPNGGQSFRLNWA 144
>gi|224115306|ref|XP_002316998.1| predicted protein [Populus trichocarpa]
gi|222860063|gb|EEE97610.1| predicted protein [Populus trichocarpa]
Length = 403
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 103/187 (55%), Gaps = 43/187 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
+D+ + +LQETF AKV D TG +KGYGF+RF DENE+ RAM+EMNG
Sbjct: 170 AADVNDYLLQETFRNVYPSVKGAKVVTDRVTGRSKGYGFIRFADENEQRRAMVEMNGQYC 229
Query: 57 ---------------------------------DGKSNNATIFVGALDSNVSDKDLRELF 83
+ NN TIFVGALD +V+D LR +F
Sbjct: 230 STRPMRIGPAATKKPLTQQYQKATYQNPQGNQGENDPNNTTIFVGALDPSVTDDTLRAVF 289
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
S +GE++ VKIP GK CGFVQFANR AE AL L GT I Q +RLSWG +P NKQ +
Sbjct: 290 SKYGELVHVKIPAGKRCGFVQFANRTSAEQALSMLNGTQIAGQNIRLSWGRSPSNKQVQP 349
Query: 144 DHINHWN 150
D + WN
Sbjct: 350 DQ-SQWN 355
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 29/140 (20%)
Query: 20 RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA---------------- 63
+AKV + TG+ +GYGF+ F R + NG+ ++
Sbjct: 97 QAKVIRNKQTGYPEGYGFIEFVSRAAAERILQTYNGTPMPNSEQAFRLNWATLGAGERRQ 156
Query: 64 ------TIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKD 110
T+FVG L ++V+D L+E F + + + K+ KG GF++FA+ +
Sbjct: 157 DDGPDFTVFVGDLAADVNDYLLQETFRNVYPSVKGAKVVTDRVTGRSKGYGFIRFADENE 216
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 217 QRRAMVEMNGQYCSTRPMRI 236
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
++++G L + + L +FS GEI+ K+ K G GF++F +R AE LQ
Sbjct: 70 SLWIGDLQQWMDENYLLSIFSATGEIVQAKVIRNKQTGYPEGYGFIEFVSRAAAERILQT 129
Query: 118 LQGTAI--GKQTVRLSWG 133
GT + +Q RL+W
Sbjct: 130 YNGTPMPNSEQAFRLNWA 147
>gi|242042043|ref|XP_002468416.1| hypothetical protein SORBIDRAFT_01g045570 [Sorghum bicolor]
gi|241922270|gb|EER95414.1| hypothetical protein SORBIDRAFT_01g045570 [Sorghum bicolor]
Length = 415
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 103/188 (54%), Gaps = 53/188 (28%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DENE++RAM EMNG
Sbjct: 116 APDVTDYLLQETFRVNYPSVRGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGVYC 175
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
D N TIF+G LD
Sbjct: 176 STRPMRISAAIPKKSTGSQLQYSAAKAVYPATAYAMPQLQAVLPDSDPTNTTIFIGNLDP 235
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
NV++ +LR++ FGE++ VKIPVGKGCGFVQ+A+R AE A+Q+L GT IG+Q VRLSW
Sbjct: 236 NVTEDELRQICVQFGELIYVKIPVGKGCGFVQYASRASAEEAVQRLHGTMIGQQAVRLSW 295
Query: 133 GHNPGNKQ 140
G +P +KQ
Sbjct: 296 GRSPASKQ 303
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
T+++G L + L F+H GE+ SVKI + +G GF++F + + AE LQ
Sbjct: 16 TLWIGDLQYWTDENYLYSCFAHTGEVQSVKIIRNKVTSLPEGYGFIEFVSHEAAEKILQT 75
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + + T RL+W
Sbjct: 76 YNGTQMPGTEHTFRLNWA 93
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + T +GYGF+ F + + NG+ T
Sbjct: 45 KIIRNKVTSLPEGYGFIEFVSHEAAEKILQTYNGTQMPGTEHTFRLNWASFSSGERRPDP 104
Query: 65 -----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F ++ + K+ KG GFV+FA+ +
Sbjct: 105 GSDHSIFVGDLAPDVTDYLLQETFRVNYPSVRGAKVVTDPNTGRSKGYGFVKFADENEKN 164
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 165 RAMTEMNGVYCSTRPMRIS 183
>gi|356555656|ref|XP_003546146.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 411
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 106/189 (56%), Gaps = 45/189 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV ID TG TKGYGFVRF +E+E+ RAM EM G
Sbjct: 169 AADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSEESEQMRAMTEMQGVLC 228
Query: 56 ----------------------------------SDGKSNNATIFVGALDSNVSDKDLRE 81
++ NN TIFVG LD NV+D LR+
Sbjct: 229 STRPMRIGPASNKTPATQSQPKASYLNSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQ 288
Query: 82 LFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQW 141
+FS +GE++ VKIP GK CGFVQFA+R AE AL+ L GT +G Q VRLSWG +P NKQ
Sbjct: 289 VFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQA 348
Query: 142 RGDHINHWN 150
+ D N WN
Sbjct: 349 QADP-NQWN 356
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 30/147 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------- 56
S KV + T ++GYGF+ F R + NG+
Sbjct: 94 SSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTYNGAIMPNGGQSFRLNWATFSAGERS 153
Query: 57 -DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANR 108
S + TIFVG L ++V+D L+E F + + + K+ + KG GFV+F+
Sbjct: 154 RQDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSEE 213
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHN 135
+ A+ ++QG + +R+ N
Sbjct: 214 SEQMRAMTEMQGVLCSTRPMRIGPASN 240
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE+ SVK+ K G GF++F +R AE LQ
Sbjct: 68 TLWIGDLQYWMDENYLYTCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQT 127
Query: 118 LQGTAI--GKQTVRLSWG 133
G + G Q+ RL+W
Sbjct: 128 YNGAIMPNGGQSFRLNWA 145
>gi|356563290|ref|XP_003549897.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 402
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 106/187 (56%), Gaps = 43/187 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV ID TG TKGYGFVRFGDE+E+ RAM EM G
Sbjct: 166 AADVTDYLLQETFRARYPSAKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMSEMQGVLC 225
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
++ NN TIFVG LD NV+D LR++F
Sbjct: 226 STRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVF 285
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
+GE++ VKIP GK CGFVQFA+R AE AL+ L GT +G Q VRLSWG +P NKQ +
Sbjct: 286 GQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQP 345
Query: 144 DHINHWN 150
D N WN
Sbjct: 346 D-ANQWN 351
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE+ SVK+ K G GF++F +R AE LQ
Sbjct: 66 TLWIGDLQYWMDENYLYTCFAHTGELASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQT 125
Query: 118 LQGTAI--GKQTVRLSWG 133
GT + G Q RL+W
Sbjct: 126 YNGTIMPNGGQNFRLNWA 143
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 29/147 (19%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK- 59
+ KV + T ++GYGF+ F R + NG S G+
Sbjct: 91 LASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTYNGTIMPNGGQNFRLNWATFSAGER 150
Query: 60 ----SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANR 108
S + TIFVG L ++V+D L+E F + + K+ + KG GFV+F +
Sbjct: 151 RHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSAKGAKVVIDRLTGRTKGYGFVRFGDE 210
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHN 135
+ A+ ++QG + +R+ N
Sbjct: 211 SEQVRAMSEMQGVLCSTRPMRIGPASN 237
>gi|84468322|dbj|BAE71244.1| putative DNA binding protein [Trifolium pratense]
Length = 402
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 104/187 (55%), Gaps = 43/187 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV ID TG +KGYGFVRF DE E+ RAM EM G
Sbjct: 160 AADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLC 219
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
S+ NN TIFVG LD NV+D LR++F
Sbjct: 220 STRPMRIGPATNKNPAATTQAKASYSNTPGGQSENDPNNTTIFVGNLDPNVTDDHLRQVF 279
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
S +GE++ VKIP GK CGFVQF++R AE A++ L GT +G Q VRLSWG P NKQ +
Sbjct: 280 SQYGELVHVKIPSGKRCGFVQFSDRSSAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQ 339
Query: 144 DHINHWN 150
D N WN
Sbjct: 340 DP-NQWN 345
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 35/142 (24%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------- 56
KV + T ++GYGF+ F R + G+
Sbjct: 87 KVIRNKQTSQSEGYGFIEFNTRASAERVLQTYQGAIMPNGGQSYRLNWATFSAGERSSRQ 146
Query: 57 -DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANR 108
DG + TIFVG L ++V+D L+E F + + + K+ + KG GFV+FA+
Sbjct: 147 DDGPDH--TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADE 204
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ A+ ++QG + +R+
Sbjct: 205 GEQMRAMTEMQGVLCSTRPMRI 226
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F + GE+ SVK+ K G GF++F R AE LQ
Sbjct: 58 TLWIGDLQYWMDENYLYTCFGNTGEVTSVKVIRNKQTSQSEGYGFIEFNTRASAERVLQT 117
Query: 118 LQGTAI--GKQTVRLSWG 133
QG + G Q+ RL+W
Sbjct: 118 YQGAIMPNGGQSYRLNWA 135
>gi|449513289|ref|XP_004164285.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
RBP47B'-like [Cucumis sativus]
Length = 427
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 111/212 (52%), Gaps = 65/212 (30%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DENER+RAM EMNG
Sbjct: 122 PDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGXYCS 181
Query: 56 ----------------------------------------------SDGKSNNATIFVGA 69
+D +NN TIFVG
Sbjct: 182 TRPMRISAATPKKPLVFSSNTVXVKVMNNESMYPVPAYTTSVPVLPADYDANNTTIFVGN 241
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129
LD N+++++L++ F FGEI VKIP GKGCGFVQF R AE A+QK+QG IG+Q VR
Sbjct: 242 LDPNITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVR 301
Query: 130 LSWGHNPGNKQ----WRGDHI--NHWNGAHYG 155
SWG NP KQ W G + N W+ A+YG
Sbjct: 302 TSWGRNPAAKQDLTTW-GQQVDPNQWS-AYYG 331
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L F+H GE++S+KI K G GFV+F + AE LQ
Sbjct: 21 TLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQT 80
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +QT RL+W
Sbjct: 81 YNGTQMPGTEQTFRLNWA 98
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + TG +GYGFV F R + NG+ T
Sbjct: 50 KIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDA 109
Query: 65 -----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F + + + K+ KG GFV+FA+ +
Sbjct: 110 GPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERN 169
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 170 RAMSEMNGXYCSTRPMRIS 188
>gi|238005936|gb|ACR34003.1| unknown [Zea mays]
gi|414865083|tpg|DAA43640.1| TPA: RNA-binding post-transcriptional regulator csx1 [Zea mays]
Length = 415
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 102/187 (54%), Gaps = 53/187 (28%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DENE++RAM EMNG
Sbjct: 117 PDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGVYCS 176
Query: 56 ------------------------------------------SDGKSNNATIFVGALDSN 73
D N TIF+G LD N
Sbjct: 177 TRPMRISAAIPKKSTGSQLQYSAAKAVYPATAYAMPQLQAVLPDSDPTNTTIFIGNLDPN 236
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V + +LR++ FGE++ VKIPVGKGCGFVQ+A+R AE A+Q+L GT IG+Q VRLSWG
Sbjct: 237 VIEDELRQICVQFGELIYVKIPVGKGCGFVQYASRASAEEAVQRLHGTMIGQQAVRLSWG 296
Query: 134 HNPGNKQ 140
+P +KQ
Sbjct: 297 RSPASKQ 303
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
T+++G L + L F+H GE+ SVKI + +G GF++F + + AE LQ
Sbjct: 16 TLWIGDLQYWTDENYLYSCFAHTGEVQSVKIIRNKVTSLPEGYGFIEFVSHEAAEKILQT 75
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + + T RL+W
Sbjct: 76 YNGTQMPGTEHTFRLNWA 93
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + T +GYGF+ F + + NG+ T
Sbjct: 45 KIIRNKVTSLPEGYGFIEFVSHEAAEKILQTYNGTQMPGTEHTFRLNWASFSSGERRPDP 104
Query: 65 -----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F ++ + K+ KG GFV+FA+ +
Sbjct: 105 GSDHSIFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKN 164
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 165 RAMTEMNGVYCSTRPMRIS 183
>gi|226506980|ref|NP_001152183.1| LOC100285821 [Zea mays]
gi|195653617|gb|ACG46276.1| RNA-binding post-transcriptional regulator csx1 [Zea mays]
Length = 415
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 102/187 (54%), Gaps = 53/187 (28%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DENE++RAM EMNG
Sbjct: 117 PDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGVYCS 176
Query: 56 ------------------------------------------SDGKSNNATIFVGALDSN 73
D N TIF+G LD N
Sbjct: 177 TRPMRISAAIPKKSTGSQLQYSAAKAVYPATAYAMPQLQAVLPDSDPTNTTIFIGNLDPN 236
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V + +LR++ FGE++ VKIPVGKGCGFVQ+A+R AE A+Q+L GT IG+Q VRLSWG
Sbjct: 237 VIEDELRQICVQFGELIYVKIPVGKGCGFVQYASRASAEEAVQRLHGTMIGQQAVRLSWG 296
Query: 134 HNPGNKQ 140
+P +KQ
Sbjct: 297 RSPASKQ 303
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
T+++G L + L F+H GE+ SVKI + +G GF++F + + AE LQ
Sbjct: 16 TLWIGDLQYWTDENYLYSCFAHTGEVQSVKIIRNKVTSLPEGYGFIEFVSHEAAEKILQT 75
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + + T RL+W
Sbjct: 76 YNGTQMPGTEHTFRLNWA 93
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + T +GYGF+ F + + NG+ T
Sbjct: 45 KIIRNKVTSLPEGYGFIEFVSHEAAEKILQTYNGTQMPGTEHTFRLNWASFSSGERRPDP 104
Query: 65 -----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F ++ + K+ KG GFV+FA+ +
Sbjct: 105 GSDHSIFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKN 164
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 165 RAMTEMNGVYCSTRPMRIS 183
>gi|222640040|gb|EEE68172.1| hypothetical protein OsJ_26296 [Oryza sativa Japonica Group]
Length = 329
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 108/187 (57%), Gaps = 40/187 (21%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ ILQETF AKV D T +KGYGFV+FGD +E++RAM EMNG
Sbjct: 89 ADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPSEQARAMTEMNGMVCS 148
Query: 56 ----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFG 87
SD +N TIFVG LD +V+D L+++F+ +G
Sbjct: 149 SRPMRIGPAANKKATGVQEKVPSAQGVQSDSDPSNTTIFVGGLDPSVTDDMLKQVFTPYG 208
Query: 88 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH-I 146
+++ VKIPVGK CGFVQFANR A+ AL LQGT IG Q VRLSWG +P N+Q +
Sbjct: 209 DVVHVKIPVGKRCGFVQFANRASADEALVLLQGTLIGGQNVRLSWGRSPSNRQAQPQQDS 268
Query: 147 NHWNGAH 153
N W GA+
Sbjct: 269 NQWGGAN 275
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 26/140 (18%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D TG +GYGF+ F R + NG S G+ + +
Sbjct: 20 KLIRDKQTGQLQGYGFIEFTSHAGAERVLQTYNGAMMPNVEQTYRLNWASAGEKRDDTPD 79
Query: 63 ATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A+
Sbjct: 80 YTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPSEQARAM 139
Query: 116 QKLQGTAIGKQTVRLSWGHN 135
++ G + +R+ N
Sbjct: 140 TEMNGMVCSSRPMRIGPAAN 159
>gi|10120421|gb|AAG13046.1|AC011807_5 Putative RNA binding protein [Arabidopsis thaliana]
Length = 468
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 118/220 (53%), Gaps = 73/220 (33%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+++++L ETF+ AKV IDSNTG +KGYGFVRFGDENERSRAM EMNG
Sbjct: 221 APDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFC 280
Query: 56 ----------------SDGKSN------------------NATIFVG-AL---------- 70
+ G+ N N +F+G AL
Sbjct: 281 SSRQMRVGIATPKRAAAYGQQNGSQGLITCLDALNIASEVNCNVFIGLALTLAGGHGGNG 340
Query: 71 -----DSNVS-------DKDLRE-----LFSHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
+SN S D D+ E FS FGE++SVKIPVGKGCGFVQFANR+ AE
Sbjct: 341 SMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEE 400
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAH 153
A+ L GT IGK TVRLSWG +P NKQWR D N WNG +
Sbjct: 401 AIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGY 439
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANR 108
G G + T++VG L + + L FSH E+ SVK+ K G GFV+F +R
Sbjct: 111 GGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSR 170
Query: 109 KDAEVALQKLQGTAI--GKQTVRLSW 132
AE ALQ G + +Q RL+W
Sbjct: 171 SAAEEALQSFSGVTMPNAEQPFRLNW 196
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 30/142 (21%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGKSN 61
S KV + T ++GYGFV F + A+ +G S G+
Sbjct: 146 SSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKR 205
Query: 62 ------NATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANR 108
+ +IFVG L +VSD L E F+ + + K+ + KG GFV+F +
Sbjct: 206 ASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDE 265
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 266 NERSRAMTEMNGAFCSSRQMRV 287
>gi|40253807|dbj|BAD05744.1| putative RNA Binding Protein 45 [Oryza sativa Japonica Group]
gi|40253847|dbj|BAD05783.1| putative RNA Binding Protein 45 [Oryza sativa Japonica Group]
Length = 427
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 108/188 (57%), Gaps = 40/188 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ ILQETF AKV D T +KGYGFV+FGD +E++RAM EMNG
Sbjct: 193 AADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPSEQARAMTEMNGMVC 252
Query: 56 -----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHF 86
SD +N TIFVG LD +V+D L+++F+ +
Sbjct: 253 SSRPMRIGPAANKKATGVQEKVPSAQGVQSDSDPSNTTIFVGGLDPSVTDDMLKQVFTPY 312
Query: 87 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH- 145
G+++ VKIPVGK CGFVQFANR A+ AL LQGT IG Q VRLSWG +P N+Q +
Sbjct: 313 GDVVHVKIPVGKRCGFVQFANRASADEALVLLQGTLIGGQNVRLSWGRSPSNRQAQPQQD 372
Query: 146 INHWNGAH 153
N W GA+
Sbjct: 373 SNQWGGAN 380
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 26/135 (19%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D TG +GYGF+ F R + NG S G+ + +
Sbjct: 125 KLIRDKQTGQLQGYGFIEFTSHAGAERVLQTYNGAMMPNVEQTYRLNWASAGEKRDDTPD 184
Query: 63 ATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A+
Sbjct: 185 YTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPSEQARAM 244
Query: 116 QKLQGTAIGKQTVRL 130
++ G + +R+
Sbjct: 245 TEMNGMVCSSRPMRI 259
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + + F+ GE+ SVK+ K G GF++F + AE LQ
Sbjct: 96 TLWIGDLQYWMDENYISACFAPTGELQSVKLIRDKQTGQLQGYGFIEFTSHAGAERVLQT 155
Query: 118 LQGTAIG--KQTVRLSWG 133
G + +QT RL+W
Sbjct: 156 YNGAMMPNVEQTYRLNWA 173
>gi|357144721|ref|XP_003573391.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Brachypodium distachyon]
Length = 435
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 105/187 (56%), Gaps = 41/187 (21%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ ILQETF AKV D T +KGYGFV+F D E++RAM EMNG
Sbjct: 197 ADVTDYILQETFRVHYPSVKGAKVVTDKLTMRSKGYGFVKFSDPTEQTRAMTEMNGMVCS 256
Query: 56 -----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHF 86
SD +N TIFVG LD NV++ L+++F+ +
Sbjct: 257 SRPMRIGPAANKQKVSGAQEKVPSAQGVQSDSDPSNTTIFVGGLDPNVTEDMLKQVFAPY 316
Query: 87 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH- 145
GE++ VKIPVGK CGFVQ+A+R +E AL LQGT IG Q VRLSWG +P NKQ +
Sbjct: 317 GEVVHVKIPVGKRCGFVQYASRSSSEEALLMLQGTVIGGQNVRLSWGRSPSNKQVQTPQD 376
Query: 146 INHWNGA 152
N W GA
Sbjct: 377 SNQWGGA 383
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 30/142 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------DGKS 60
K+ D TG +GYGFV F R + NG+ DG
Sbjct: 128 KLIRDKQTGQLQGYGFVEFTTRAGAERVLQTYNGATMPNVEMPYRLNWASAGEKRDDGP- 186
Query: 61 NNATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
+ TIFVG L ++V+D L+E F H+ + K+ KG GFV+F++ +
Sbjct: 187 -DYTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKLTMRSKGYGFVKFSDPTEQTR 245
Query: 114 ALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 246 AMTEMNGMVCSSRPMRIGPAAN 267
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + + F+H GE+ SVK+ K G GFV+F R AE LQ
Sbjct: 99 TLWIGDLQYWMDENYVYGCFAHTGEVQSVKLIRDKQTGQLQGYGFVEFTTRAGAERVLQT 158
Query: 118 LQGTAIG--KQTVRLSWG 133
G + + RL+W
Sbjct: 159 YNGATMPNVEMPYRLNWA 176
>gi|224124344|ref|XP_002319308.1| predicted protein [Populus trichocarpa]
gi|222857684|gb|EEE95231.1| predicted protein [Populus trichocarpa]
Length = 344
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 98/177 (55%), Gaps = 42/177 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
+D+ + +LQETF AKV D TG +KGYGFVRF DENE+ RAM+EMNG
Sbjct: 168 AADVNDYLLQETFRNVYSSVKGAKVVTDRVTGRSKGYGFVRFADENEQMRAMVEMNGQYC 227
Query: 57 ---------------------------------DGKSNNATIFVGALDSNVSDKDLRELF 83
+ NN TIFVGALD +V+D LR +F
Sbjct: 228 STRPMRIGPAATKKPLTQQYQKAAYQSPQGNQGESDPNNTTIFVGALDPSVTDDTLRAVF 287
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
S +GE++ VKIP GK CGFVQFANR AE AL L GT I Q +RLSWG +P NKQ
Sbjct: 288 SKYGELVHVKIPAGKRCGFVQFANRTCAEQALSMLNGTQIAGQNIRLSWGRSPSNKQ 344
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 29/140 (20%)
Query: 20 RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN------------------ 61
+AKV + TG+ +GYGF+ F R + NG+ ++
Sbjct: 95 QAKVIRNKQTGYPEGYGFIEFVSHAAAERILQTYNGTPMPNSEQTFRLNWATLGAGERRQ 154
Query: 62 ----NATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKD 110
+ T+F+G L ++V+D L+E F + + + K+ KG GFV+FA+ +
Sbjct: 155 DDGPDYTVFIGDLAADVNDYLLQETFRNVYSSVKGAKVVTDRVTGRSKGYGFVRFADENE 214
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 215 QMRAMVEMNGQYCSTRPMRI 234
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
++++G L + + + +FS GE++ K+ K G GF++F + AE LQ
Sbjct: 68 SLWIGDLQQWMDENYILSIFSTTGEVVQAKVIRNKQTGYPEGYGFIEFVSHAAAERILQT 127
Query: 118 LQGTAI--GKQTVRLSWG 133
GT + +QT RL+W
Sbjct: 128 YNGTPMPNSEQTFRLNWA 145
>gi|365192966|gb|AEW68341.1| putative nuclear acid binding protein [Medicago sativa]
Length = 409
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 107/189 (56%), Gaps = 43/189 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+++ L E F AKV ID NTG +KGYGFVRF DE+E+ RAM EM G
Sbjct: 173 AADVSDHHLTEVFRTRYNSVKGAKVVIDRNTGRSKGYGFVRFADESEQMRAMTEMQGVLC 232
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
++ NN TIFVG LD NV+D+ L+++F
Sbjct: 233 STRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVF 292
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
+ +GE++ VKIP GK CGFVQFA+R AE AL+ L GT +G Q VRLSWG +P NKQ +
Sbjct: 293 TQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQ 352
Query: 144 DHINHWNGA 152
D N WNG+
Sbjct: 353 DP-NQWNGS 360
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 29/143 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + ++GYGF+ F R + NG S G+
Sbjct: 102 KVIRNKLNNQSEGYGFLEFISRAGAERVLQTYNGTIMPNGGQNFRLNWATFSSGEKRHDD 161
Query: 60 SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
S + TIFVG L ++VSD L E+F + + + K+ + KG GFV+FA+ +
Sbjct: 162 SPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRNTGRSKGYGFVRFADESEQM 221
Query: 113 VALQKLQGTAIGKQTVRLSWGHN 135
A+ ++QG + +R+ N
Sbjct: 222 RAMTEMQGVLCSTRPMRIGPASN 244
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L FSH GE+ SVK+ K G GF++F +R AE LQ
Sbjct: 73 TLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKLNNQSEGYGFLEFISRAGAERVLQT 132
Query: 118 LQGTAI--GKQTVRLSWG 133
GT + G Q RL+W
Sbjct: 133 YNGTIMPNGGQNFRLNWA 150
>gi|297792959|ref|XP_002864364.1| hypothetical protein ARALYDRAFT_495572 [Arabidopsis lyrata subsp.
lyrata]
gi|297310199|gb|EFH40623.1| hypothetical protein ARALYDRAFT_495572 [Arabidopsis lyrata subsp.
lyrata]
Length = 398
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 103/190 (54%), Gaps = 45/190 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
++T+ +L +TF AKV +D TG +KGYGFVRF DENE+ RAM EMNG
Sbjct: 166 APEVTDYMLSDTFKNVYGSVKGAKVVVDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYC 225
Query: 57 --------------------------------DGKSNNATIFVGALDSNVSDKDLRELFS 84
D NN TIFVG LD+NV+D +L+ +F
Sbjct: 226 STRPMRIGPAANKNALPMQPAMYQNTQGGNAGDSDPNNTTIFVGGLDANVTDDELKSIFG 285
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
FGE+L VKIP GK CGFVQ+ANR AE AL L GT +G Q++RLSWG +P NKQ
Sbjct: 286 QFGELLHVKIPPGKRCGFVQYANRATAEHALSVLNGTQLGGQSIRLSWGRSP-NKQ---P 341
Query: 145 HINHWNGAHY 154
WNG Y
Sbjct: 342 DQAQWNGGGY 351
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 30/145 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN------------------- 61
AKV + TG ++GYGF+ F + + R + NG+ S
Sbjct: 93 AKVIRNKLTGQSEGYGFIEFINHSVAERVLQTYNGAQMPSTEQTFRLNWAQAGAGEKRHQ 152
Query: 62 ----NATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKD 110
+ TIFVG L V+D L + F + +G + K+ V KG GFV+FA+ +
Sbjct: 153 TEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVVDRTTGRSKGYGFVRFADENE 212
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 213 QMRAMTEMNGQYCSTRPMRIGPAAN 237
>gi|242033859|ref|XP_002464324.1| hypothetical protein SORBIDRAFT_01g016170 [Sorghum bicolor]
gi|241918178|gb|EER91322.1| hypothetical protein SORBIDRAFT_01g016170 [Sorghum bicolor]
Length = 409
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 110/189 (58%), Gaps = 45/189 (23%)
Query: 6 VSDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+ ILQ+TF SR AKV D TG +KGYGFV+F D +E++RAM EMNG
Sbjct: 173 ASDVTDFILQDTFKSRYPSVKSAKVVFDRTTGRSKGYGFVKFADLDEQTRAMTEMNGQYC 232
Query: 56 ----------------------------------SDGKSNNATIFVGALDSNVSDKDLRE 81
SD NN T+FVG LD +V+D+ L++
Sbjct: 233 SSRPMRLGPASNKKNTGGQPQPSSTIYQNTQGTDSDSDPNNTTVFVGGLDPSVTDELLKQ 292
Query: 82 LFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQW 141
FS +GE+L VKIPVGK CGFVQ++NR AE A++ L G+ +G Q++RLSWG +P NKQ
Sbjct: 293 TFSPYGELLYVKIPVGKRCGFVQYSNRASAEEAIRMLNGSQLGGQSIRLSWGRSPANKQP 352
Query: 142 RGDHINHWN 150
+ + N W+
Sbjct: 353 QQEQ-NQWS 360
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 39/162 (24%)
Query: 14 LQETFSRA------KVTIDSNTGHTKGYGFVRFGD--------ENERSRAMIEMN----- 54
L FS+A K+ + TG +GYGF+ FG+ +N + M +N
Sbjct: 88 LYSCFSQAGEVISVKIIRNKQTGQPEGYGFIEFGNHALAEQVLQNYNGQMMPNVNQPFKL 147
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------ 96
G DG ++ TIFVG L S+V+D L++ F S + + S K+
Sbjct: 148 NWATSGAGEKRGDDG--SDYTIFVGDLASDVTDFILQDTFKSRYPSVKSAKVVFDRTTGR 205
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
KG GFV+FA+ + A+ ++ G + +RL N N
Sbjct: 206 SKGYGFVKFADLDEQTRAMTEMNGQYCSSRPMRLGPASNKKN 247
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L FS GE++SVKI K G GF++F N AE LQ
Sbjct: 73 TLWIGDLQYWMDENYLYSCFSQAGEVISVKIIRNKQTGQPEGYGFIEFGNHALAEQVLQN 132
Query: 118 LQGTAIG--KQTVRLSWGHNPGNKQWRGD 144
G + Q +L+W + G + RGD
Sbjct: 133 YNGQMMPNVNQPFKLNWATS-GAGEKRGD 160
>gi|293337265|ref|NP_001168324.1| uncharacterized protein LOC100382091 [Zea mays]
gi|223947441|gb|ACN27804.1| unknown [Zea mays]
gi|223947469|gb|ACN27818.1| unknown [Zea mays]
gi|413933766|gb|AFW68317.1| hypothetical protein ZEAMMB73_975236, partial [Zea mays]
Length = 406
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 105/178 (58%), Gaps = 43/178 (24%)
Query: 6 VSDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+ ILQ+TF SR AKV D TG +KGYGFV+F D +E++RAM EMNG
Sbjct: 171 ASDVTDFILQDTFKSRYPSVKGAKVVFDRTTGRSKGYGFVKFADSDEQTRAMTEMNGQYC 230
Query: 56 ---------------------------------SDGKSNNATIFVGALDSNVSDKDLREL 82
SD NN T+FVG LD +V+D+ L++
Sbjct: 231 SSRAMRLGPASNKKNTGGPQPSSAIYQNTQGTDSDSDPNNTTVFVGGLDPSVTDELLKQT 290
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
FS +GE+L VKIPVGK CGFVQ++NR AE A++ L G+ +G Q++RLSWG +P NKQ
Sbjct: 291 FSPYGELLYVKIPVGKRCGFVQYSNRASAEEAIRVLNGSQLGGQSIRLSWGRSPANKQ 348
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 39/162 (24%)
Query: 14 LQETFSRA------KVTIDSNTGHTKGYGFVRFGD--------ENERSRAMIEMN----- 54
L FS+A K+ + TG +GYGF+ F + +N + M +N
Sbjct: 86 LYSCFSQAGEVISVKIIRNKQTGQPEGYGFIEFSNHAVAEQVLQNYNGQMMPNVNQPFKL 145
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------ 96
G DG ++ TIFVG L S+V+D L++ F S + + K+
Sbjct: 146 NWATSGAGEKRGDDG--SDYTIFVGDLASDVTDFILQDTFKSRYPSVKGAKVVFDRTTGR 203
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
KG GFV+FA+ + A+ ++ G + +RL N N
Sbjct: 204 SKGYGFVKFADSDEQTRAMTEMNGQYCSSRAMRLGPASNKKN 245
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L FS GE++SVKI K G GF++F+N AE LQ
Sbjct: 71 TLWIGDLQYWMDENYLYSCFSQAGEVISVKIIRNKQTGQPEGYGFIEFSNHAVAEQVLQN 130
Query: 118 LQGTAIG--KQTVRLSWGHNPGNKQWRGD 144
G + Q +L+W + G + RGD
Sbjct: 131 YNGQMMPNVNQPFKLNWATS-GAGEKRGD 158
>gi|388507756|gb|AFK41944.1| unknown [Medicago truncatula]
Length = 411
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 106/189 (56%), Gaps = 43/189 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+++ L E F AKV ID TG TKGYGFVRF DE+E+ RAM EM G
Sbjct: 175 AADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLC 234
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
++ NN TIFVG LD NV+D+ L+++F
Sbjct: 235 STRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVF 294
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
+ +GE++ VKIP GK CGFVQFA+R AE AL+ L GT +G Q VRLSWG +P NKQ +
Sbjct: 295 TQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQ 354
Query: 144 DHINHWNGA 152
D N WNG+
Sbjct: 355 DP-NQWNGS 362
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 29/143 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + T ++GYGF+ F R + NG S G+
Sbjct: 104 KVIRNKQTNQSEGYGFLEFISRAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDD 163
Query: 60 SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDAE 112
S + TIFVG L ++VSD L E+F + + + K+ + KG GFV+FA+ +
Sbjct: 164 SPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQM 223
Query: 113 VALQKLQGTAIGKQTVRLSWGHN 135
A+ ++QG + +R+ N
Sbjct: 224 RAMTEMQGVLCSTRPMRIGPASN 246
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L FSH GE+ SVK+ K G GF++F +R AE LQ
Sbjct: 75 TLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQT 134
Query: 118 LQGTAI--GKQTVRLSWG 133
GT + G Q RL+W
Sbjct: 135 FNGTIMPNGGQNFRLNWA 152
>gi|357480263|ref|XP_003610417.1| RNA-binding protein [Medicago truncatula]
gi|355511472|gb|AES92614.1| RNA-binding protein [Medicago truncatula]
Length = 411
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 106/189 (56%), Gaps = 43/189 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+++ L E F AKV ID TG TKGYGFVRF DE+E+ RAM EM G
Sbjct: 175 AADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLC 234
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
++ NN TIFVG LD NV+D+ L+++F
Sbjct: 235 STRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVF 294
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
+ +GE++ VKIP GK CGFVQFA+R AE AL+ L GT +G Q VRLSWG +P NKQ +
Sbjct: 295 TQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQ 354
Query: 144 DHINHWNGA 152
D N WNG+
Sbjct: 355 DP-NQWNGS 362
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 29/143 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK----- 59
KV + T ++GYGF+ F R + NG S G+
Sbjct: 104 KVIRNKQTNQSEGYGFLEFISRAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDD 163
Query: 60 SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDAE 112
S + TIFVG L ++VSD L E+F + + + K+ + KG GFV+FA+ +
Sbjct: 164 SPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQM 223
Query: 113 VALQKLQGTAIGKQTVRLSWGHN 135
A+ ++QG + +R+ N
Sbjct: 224 RAMTEMQGVLCSTRPMRIGPASN 246
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L FSH GE+ SVK+ K G GF++F +R AE LQ
Sbjct: 75 TLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQT 134
Query: 118 LQGTAI--GKQTVRLSWG 133
GT + G Q RL+W
Sbjct: 135 FNGTIMPNGGQNFRLNWA 152
>gi|115451047|ref|NP_001049124.1| Os03g0174100 [Oryza sativa Japonica Group]
gi|113547595|dbj|BAF11038.1| Os03g0174100, partial [Oryza sativa Japonica Group]
Length = 438
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 100/188 (53%), Gaps = 53/188 (28%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DENE++RAM EMNG
Sbjct: 139 APDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYC 198
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
D N TIF+G LD
Sbjct: 199 STRPMRISAAIPKKTTGSQLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIFIGNLDQ 258
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
NV++ +LR++ FGE++ VKIP K CGFVQ+A+R AE A+Q+L GT IG+Q VRLSW
Sbjct: 259 NVTEDELRQICVQFGELIYVKIPANKACGFVQYASRASAEEAVQRLHGTTIGQQVVRLSW 318
Query: 133 GHNPGNKQ 140
G +P +KQ
Sbjct: 319 GRSPASKQ 326
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
T+++G L + L F+H GE+ SVKI + +G GF++F + + AE LQ
Sbjct: 39 TLWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVLQT 98
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + + T RL+W
Sbjct: 99 YNGTQMPGTEHTFRLNWA 116
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + T +GYGF+ F + + NG+ T
Sbjct: 68 KIIRNKLTSLPEGYGFIEFISHEVAEKVLQTYNGTQMPGTEHTFRLNWASFSSGERRPDA 127
Query: 65 -----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F + + K+ KG GFV+FA+ +
Sbjct: 128 GPDHSIFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKN 187
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 188 RAMTEMNGMYCSTRPMRIS 206
>gi|218192181|gb|EEC74608.1| hypothetical protein OsI_10216 [Oryza sativa Indica Group]
Length = 416
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 100/188 (53%), Gaps = 53/188 (28%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DENE++RAM EMNG
Sbjct: 117 APDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYC 176
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
D N TIF+G LD
Sbjct: 177 STRPMRISAAIPKKTTGSQLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIFIGNLDQ 236
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
NV++ +LR++ FGE++ VKIP K CGFVQ+A+R AE A+Q+L GT IG+Q VRLSW
Sbjct: 237 NVTEDELRQICVQFGELIYVKIPANKACGFVQYASRASAEEAVQRLHGTTIGQQVVRLSW 296
Query: 133 GHNPGNKQ 140
G +P +KQ
Sbjct: 297 GRSPASKQ 304
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
T+++G L + L F+H GE+ SVKI + +G GF++F + + AE LQ
Sbjct: 17 TLWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVLQT 76
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + + T RL+W
Sbjct: 77 YNGTQMPGTEHTFRLNWA 94
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + T +GYGF+ F + + NG+ T
Sbjct: 46 KIIRNKLTSLPEGYGFIEFISHEVAEKVLQTYNGTQMPGTEHTFRLNWASFSSGERRPDA 105
Query: 65 -----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F + + K+ KG GFV+FA+ +
Sbjct: 106 GPDHSIFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKN 165
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 166 RAMTEMNGMYCSTRPMRIS 184
>gi|108706453|gb|ABF94248.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694482|dbj|BAG89475.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 416
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 100/188 (53%), Gaps = 53/188 (28%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DENE++RAM EMNG
Sbjct: 117 APDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYC 176
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
D N TIF+G LD
Sbjct: 177 STRPMRISAAIPKKTTGSQLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIFIGNLDQ 236
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
NV++ +LR++ FGE++ VKIP K CGFVQ+A+R AE A+Q+L GT IG+Q VRLSW
Sbjct: 237 NVTEDELRQICVQFGELIYVKIPANKACGFVQYASRASAEEAVQRLHGTTIGQQVVRLSW 296
Query: 133 GHNPGNKQ 140
G +P +KQ
Sbjct: 297 GRSPASKQ 304
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
T+++G L + L F+H GE+ SVKI + +G GF++F + + AE LQ
Sbjct: 17 TLWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVLQT 76
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + + T RL+W
Sbjct: 77 YNGTQMPGTEHTFRLNWA 94
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + T +GYGF+ F + + NG+ T
Sbjct: 46 KIIRNKLTSLPEGYGFIEFISHEVAEKVLQTYNGTQMPGTEHTFRLNWASFSSGERRPDA 105
Query: 65 -----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F + + K+ KG GFV+FA+ +
Sbjct: 106 GPDHSIFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKN 165
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 166 RAMTEMNGMYCSTRPMRIS 184
>gi|9758270|dbj|BAB08769.1| unnamed protein product [Arabidopsis thaliana]
Length = 390
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 103/190 (54%), Gaps = 45/190 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
++T+ +L +TF AKV +D TG +KGYGFVRF DENE+ RAM EMNG
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYC 221
Query: 57 --------------------------------DGKSNNATIFVGALDSNVSDKDLRELFS 84
D NN TIFVG LD+NV+D +L+ +F
Sbjct: 222 STRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFG 281
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
FGE+L VKIP GK CGFVQ+AN+ AE AL L GT +G Q++RLSWG +P NKQ
Sbjct: 282 QFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSP-NKQ---S 337
Query: 145 HINHWNGAHY 154
WNG Y
Sbjct: 338 DQAQWNGGGY 347
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 30/147 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA--------------- 63
+ AKV + TG ++GYGF+ F + R + NG+ S
Sbjct: 87 TSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKR 146
Query: 64 --------TIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANR 108
TIFVG L V+D L + F + +G + K+ + KG GFV+FA+
Sbjct: 147 FQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHN 135
+ A+ ++ G + +R+ N
Sbjct: 207 NEQMRAMTEMNGQYCSTRPMRIGPAAN 233
>gi|18423684|ref|NP_568815.1| RNA-binding protein 45A [Arabidopsis thaliana]
gi|75334165|sp|Q9FPJ8.1|RB45A_ARATH RecName: Full=Polyadenylate-binding protein RBP45A;
Short=Poly(A)-binding protein RBP45A; AltName:
Full=RNA-binding protein 45A; Short=AtRBP45A
gi|11762114|gb|AAG40335.1|AF324983_1 AT5g54900 [Arabidopsis thaliana]
gi|119360145|gb|ABL66801.1| At5g54900 [Arabidopsis thaliana]
gi|332009171|gb|AED96554.1| RNA-binding protein 45A [Arabidopsis thaliana]
Length = 387
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 103/190 (54%), Gaps = 45/190 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
++T+ +L +TF AKV +D TG +KGYGFVRF DENE+ RAM EMNG
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYC 221
Query: 57 --------------------------------DGKSNNATIFVGALDSNVSDKDLRELFS 84
D NN TIFVG LD+NV+D +L+ +F
Sbjct: 222 STRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFG 281
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
FGE+L VKIP GK CGFVQ+AN+ AE AL L GT +G Q++RLSWG +P NKQ
Sbjct: 282 QFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSP-NKQ---S 337
Query: 145 HINHWNGAHY 154
WNG Y
Sbjct: 338 DQAQWNGGGY 347
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 30/147 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA--------------- 63
+ AKV + TG ++GYGF+ F + R + NG+ S
Sbjct: 87 TSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKR 146
Query: 64 --------TIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANR 108
TIFVG L V+D L + F + +G + K+ + KG GFV+FA+
Sbjct: 147 FQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHN 135
+ A+ ++ G + +R+ N
Sbjct: 207 NEQMRAMTEMNGQYCSTRPMRIGPAAN 233
>gi|297799290|ref|XP_002867529.1| hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp.
lyrata]
gi|297313365|gb|EFH43788.1| hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp.
lyrata]
Length = 418
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 99/180 (55%), Gaps = 40/180 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
D+T+ +L ETF AKV D TG +KGYGFVRFGDE+E+ RAM EMNG
Sbjct: 182 APDVTDHMLTETFKAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQIRAMTEMNGQYC 241
Query: 57 -------------------------------DGKSNNATIFVGALDSNVSDKDLRELFSH 85
+ N TIFVGALD +V + DL+ +F
Sbjct: 242 SSRPMRTGPAANKKPLTMQPASYQNTQGNQGESDPTNTTIFVGALDQSVIEDDLKSVFGQ 301
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
FGE++ VKIP GK CGFVQ+ANR AE AL L GT +G Q++RLSWG +P NKQ + D
Sbjct: 302 FGELVHVKIPAGKRCGFVQYANRACAEQALSLLNGTQLGGQSIRLSWGRSPSNKQTQPDQ 361
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 29/140 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA--------------- 63
+ AKV + +G+++GYGF+ F + R + NG+ S++
Sbjct: 108 TSAKVIRNKQSGYSEGYGFIEFVNHATAERILQAYNGTTMPSSDQAFRLNWAQLGAGERR 167
Query: 64 -------TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
T+FVG L +V+D L E F + + + K+ KG GFV+F +
Sbjct: 168 QAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 227
Query: 110 DAEVALQKLQGTAIGKQTVR 129
+ A+ ++ G + +R
Sbjct: 228 EQIRAMTEMNGQYCSSRPMR 247
>gi|326513618|dbj|BAJ87828.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 388
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 105/188 (55%), Gaps = 41/188 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV D T +KGYGFV+FGD E++RAM EMNG
Sbjct: 181 AADVTDYLLQETFRAQYPSVKGAKVVTDKLTMRSKGYGFVKFGDPTEQTRAMTEMNGMIC 240
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
+D +N+TIFVG LD + ++ L+++F+
Sbjct: 241 SSRPMRIGPAANKQKANGVQEKVPTAQGIQTDNDPSNSTIFVGGLDPSATEDVLKQVFTP 300
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
+GE++ VKIPVGK CGFVQ+A+R AE AL LQGT I Q VRLSWG +P NKQ +
Sbjct: 301 YGEVVHVKIPVGKRCGFVQYASRSSAEEALLMLQGTMIEGQNVRLSWGRSPSNKQVQSQQ 360
Query: 146 -INHWNGA 152
N W GA
Sbjct: 361 DFNQWGGA 368
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 30/142 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------DGKS 60
K+ D TG +GYGF+ F R + NG+ DG
Sbjct: 113 KLIRDKQTGQLQGYGFIEFTSRAGAERVLQTFNGAMMPNVEMAYRLNWATAGEKHDDGA- 171
Query: 61 NNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
+ TIFVG L ++V+D L+E F + + + K+ KG GFV+F + +
Sbjct: 172 -DYTIFVGDLAADVTDYLLQETFRAQYPSVKGAKVVTDKLTMRSKGYGFVKFGDPTEQTR 230
Query: 114 ALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 231 AMTEMNGMICSSRPMRIGPAAN 252
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 51 IEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQ 104
+ G + T+++G L + + + F+ GE+ SVK+ K G GF++
Sbjct: 71 VPTQAPAGPNEARTLWIGDLQYWMDENYVYNCFASTGEVQSVKLIRDKQTGQLQGYGFIE 130
Query: 105 FANRKDAEVALQKLQGTAIG--KQTVRLSWG 133
F +R AE LQ G + + RL+W
Sbjct: 131 FTSRAGAERVLQTFNGAMMPNVEMAYRLNWA 161
>gi|222629596|gb|EEE61728.1| hypothetical protein OsJ_16246 [Oryza sativa Japonica Group]
Length = 607
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 103/182 (56%), Gaps = 40/182 (21%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ +LQETF AKV D T +KGYGFV+FGD E++RAM EMNG
Sbjct: 138 ADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCS 197
Query: 56 ----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFG 87
S+ NN TIFVG LD NV++ L+++F+ +G
Sbjct: 198 SRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNNTTIFVGGLDPNVTEDVLKQVFAPYG 257
Query: 88 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN 147
E++ VKIPVGK CGFVQ+ NR AE AL LQGT IG Q VRLSWG + NKQ + D N
Sbjct: 258 EVVHVKIPVGKRCGFVQYVNRPSAEQALAVLQGTLIGGQNVRLSWGRSLSNKQPQHDS-N 316
Query: 148 HW 149
W
Sbjct: 317 QW 318
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 26/140 (18%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D +G +GYGFV F R + NG S G+ + +
Sbjct: 69 KLIRDKQSGQLQGYGFVEFTSRAAADRILQTYNGQMMPNVEMVFRLNWASAGEKRDDTPD 128
Query: 63 ATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A+
Sbjct: 129 YTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 188
Query: 116 QKLQGTAIGKQTVRLSWGHN 135
++ G + +R+ N
Sbjct: 189 TEMNGMLCSSRPMRIGPAAN 208
>gi|125549823|gb|EAY95645.1| hypothetical protein OsI_17510 [Oryza sativa Indica Group]
Length = 426
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 103/182 (56%), Gaps = 40/182 (21%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ +LQETF AKV D T +KGYGFV+FGD E++RAM EMNG
Sbjct: 190 ADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCS 249
Query: 56 ----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFG 87
S+ NN TIFVG LD NV++ L+++F+ +G
Sbjct: 250 SRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNNTTIFVGGLDPNVTEDVLKQVFAPYG 309
Query: 88 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN 147
E++ VKIPVGK CGFVQ+ NR AE AL LQGT IG Q VRLSWG + NKQ + D N
Sbjct: 310 EVVHVKIPVGKRCGFVQYVNRPSAEQALAVLQGTLIGGQNVRLSWGRSLSNKQPQHDS-N 368
Query: 148 HW 149
W
Sbjct: 369 QW 370
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 26/135 (19%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D +G +GYGFV F R + NG S G+ + +
Sbjct: 121 KLIRDKQSGQLQGYGFVEFTSRAAADRILQTYNGQMMPNVEMVFRLNWASAGEKRDDTPD 180
Query: 63 ATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A+
Sbjct: 181 YTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 240
Query: 116 QKLQGTAIGKQTVRL 130
++ G + +R+
Sbjct: 241 TEMNGMLCSSRPMRI 255
>gi|115460682|ref|NP_001053941.1| Os04g0625800 [Oryza sativa Japonica Group]
gi|113565512|dbj|BAF15855.1| Os04g0625800 [Oryza sativa Japonica Group]
gi|215767966|dbj|BAH00195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 425
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 103/182 (56%), Gaps = 40/182 (21%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ +LQETF AKV D T +KGYGFV+FGD E++RAM EMNG
Sbjct: 189 ADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCS 248
Query: 56 ----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFG 87
S+ NN TIFVG LD NV++ L+++F+ +G
Sbjct: 249 SRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNNTTIFVGGLDPNVTEDVLKQVFAPYG 308
Query: 88 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN 147
E++ VKIPVGK CGFVQ+ NR AE AL LQGT IG Q VRLSWG + NKQ + D N
Sbjct: 309 EVVHVKIPVGKRCGFVQYVNRPSAEQALAVLQGTLIGGQNVRLSWGRSLSNKQPQHDS-N 367
Query: 148 HW 149
W
Sbjct: 368 QW 369
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 26/135 (19%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D +G +GYGFV F R + NG S G+ + +
Sbjct: 120 KLIRDKQSGQLQGYGFVEFTSRAAADRILQTYNGQMMPNVEMVFRLNWASAGEKRDDTPD 179
Query: 63 ATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A+
Sbjct: 180 YTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 239
Query: 116 QKLQGTAIGKQTVRL 130
++ G + +R+
Sbjct: 240 TEMNGMLCSSRPMRI 254
>gi|39545835|emb|CAE04743.3| OSJNBb0060E08.6 [Oryza sativa Japonica Group]
gi|116309791|emb|CAH66831.1| OSIGBa0148A10.8 [Oryza sativa Indica Group]
Length = 414
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 103/182 (56%), Gaps = 40/182 (21%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ +LQETF AKV D T +KGYGFV+FGD E++RAM EMNG
Sbjct: 178 ADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCS 237
Query: 56 ----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFG 87
S+ NN TIFVG LD NV++ L+++F+ +G
Sbjct: 238 SRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNNTTIFVGGLDPNVTEDVLKQVFAPYG 297
Query: 88 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN 147
E++ VKIPVGK CGFVQ+ NR AE AL LQGT IG Q VRLSWG + NKQ + D N
Sbjct: 298 EVVHVKIPVGKRCGFVQYVNRPSAEQALAVLQGTLIGGQNVRLSWGRSLSNKQPQHDS-N 356
Query: 148 HW 149
W
Sbjct: 357 QW 358
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 26/135 (19%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D +G +GYGFV F R + NG S G+ + +
Sbjct: 109 KLIRDKQSGQLQGYGFVEFTSRAAADRILQTYNGQMMPNVEMVFRLNWASAGEKRDDTPD 168
Query: 63 ATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A+
Sbjct: 169 YTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 228
Query: 116 QKLQGTAIGKQTVRL 130
++ G + +R+
Sbjct: 229 TEMNGMLCSSRPMRI 243
>gi|326495314|dbj|BAJ85753.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 385
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 105/187 (56%), Gaps = 42/187 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV D T +KGYGFV+FGD E++RAM EMNG
Sbjct: 181 AADVTDYLLQETFRAQYPSVKGAKVVTDKLTMRSKGYGFVKFGDPTEQTRAMTEMNGMIC 240
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
+D +N+TIFVG LD + ++ L+++F+
Sbjct: 241 SSRPMRIGPAANKQKANGVQEKVPTAQGIQTDNDPSNSTIFVGGLDPSATEDVLKQVFTP 300
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
+GE++ VKIPVGK CGFVQ+A+R AE AL LQGT I Q VRLSWG +P NKQ +
Sbjct: 301 YGEVVHVKIPVGKRCGFVQYASRSSAEEALLMLQGTMIEGQNVRLSWGRSPSNKQVQ--D 358
Query: 146 INHWNGA 152
N W GA
Sbjct: 359 FNQWGGA 365
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 30/142 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------DGKS 60
K+ D TG +GYGF+ F R + NG+ DG
Sbjct: 113 KLIRDKQTGQLQGYGFIEFTSRAGAERVLQTFNGAMMPNVEMTYRLNWATAGEKHDDGA- 171
Query: 61 NNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
+ TIFVG L ++V+D L+E F + + + K+ KG GFV+F + +
Sbjct: 172 -DYTIFVGDLAADVTDYLLQETFRAQYPSVKGAKVVTDKLTMRSKGYGFVKFGDPTEQTR 230
Query: 114 ALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 231 AMTEMNGMICSSRPMRIGPAAN 252
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 51 IEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQ 104
+ G + T+++G L + + + F+ GE+ SVK+ K G GF++
Sbjct: 71 VPTQAPAGPNEARTLWIGDLQYWMDENYVYNCFASTGEVQSVKLIRDKQTGQLQGYGFIE 130
Query: 105 FANRKDAEVALQKLQGTAIG--KQTVRLSWG 133
F +R AE LQ G + + T RL+W
Sbjct: 131 FTSRAGAERVLQTFNGAMMPNVEMTYRLNWA 161
>gi|15221071|ref|NP_172630.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75336898|sp|Q9SAB3.1|RB45B_ARATH RecName: Full=Polyadenylate-binding protein RBP45B;
Short=Poly(A)-binding protein RBP45B; AltName:
Full=RNA-binding protein 45B; Short=AtRBP45B
gi|4835793|gb|AAD30259.1|AC007296_20 Similar to gb|U90212 DNA binding protein ACBF from Nicotiana
tabacum and contains 3 PF|00076 RNA recognition motif
domains. ESTs gb|T44278, gb|R65195, gb|N65904,
gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166,
gb|N96891, gb|W43137, gb|F15504, gb|F15495 and gb|Z30868
come from this gene [Arabidopsis thaliana]
gi|20260604|gb|AAM13200.1| similar to gb|U90212 DNA binding protein ACBF from Nicotiana
tabacum and contains 3 PF|00076 RNA recognition motif
domains [Arabidopsis thaliana]
gi|30725662|gb|AAP37853.1| At1g11650 [Arabidopsis thaliana]
gi|332190643|gb|AEE28764.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 405
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 104/189 (55%), Gaps = 42/189 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ IL ETF AKV ID TG TKGYGFVRF DE+E+ RAM EMNG
Sbjct: 163 AADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPC 222
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
+D NN T+FVG LD++V+D L+ +FS
Sbjct: 223 STRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFS 282
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
+GEI+ VKIP GK CGFVQF+ + AE AL+ L G +G TVRLSWG +P NKQ GD
Sbjct: 283 QYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ-SGD 341
Query: 145 HINHWNGAH 153
+ G +
Sbjct: 342 PSQFYYGGY 350
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------G 58
AKV + TG +GYGF+ F R + N +
Sbjct: 91 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD 150
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDA 111
S + TIFVG L ++V+D L E F + + + K+ + KG GFV+F++ +
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 211 IRAMTEMNGVPCSTRPMRI 229
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE++S K+ K G GF++FA+ AE LQ
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 118 LQGTAIGK---QTVRLSWG 133
I Q RL+W
Sbjct: 123 FNNAPIPSFPDQLFRLNWA 141
>gi|165935740|gb|ABY75165.1| RNA binding protein [Arachis diogoi]
Length = 142
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 81/101 (80%), Gaps = 1/101 (0%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
S+ S N TIFVG LD NV+D+DLR+ FS +GEI+SVK+PVGKGCGFVQFA R +AE AL
Sbjct: 4 SEADSTNTTIFVGGLDPNVTDEDLRQQFSQYGEIVSVKVPVGKGCGFVQFAIRNNAEEAL 63
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDH-INHWNGAHYG 155
QKL GT IGKQTVRLSWG NP NKQ+R D NHW+G +YG
Sbjct: 64 QKLNGTVIGKQTVRLSWGRNPANKQFRMDFGGNHWSGTYYG 104
>gi|242074396|ref|XP_002447134.1| hypothetical protein SORBIDRAFT_06g029180 [Sorghum bicolor]
gi|241938317|gb|EES11462.1| hypothetical protein SORBIDRAFT_06g029180 [Sorghum bicolor]
Length = 440
Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 100/185 (54%), Gaps = 42/185 (22%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ +LQETF AKV D T TKGYGFV+FGD E++RAM EMNG
Sbjct: 191 ADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTEQARAMTEMNGMPCS 250
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
S+ NN TIFVG LD NV++ L+++FS
Sbjct: 251 SRPMRIGPAASRKNTGGVVQERVPNSQGAQSENDPNNTTIFVGGLDPNVTEDTLKQVFSP 310
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
+GE++ VKIPVGK CGFVQF R AE AL LQG IG Q VRLSWG + NKQ +
Sbjct: 311 YGEVVHVKIPVGKRCGFVQFVTRPSAEQALLMLQGALIGAQNVRLSWGRSLSNKQAQPQQ 370
Query: 146 -INHW 149
N W
Sbjct: 371 ESNQW 375
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 26/136 (19%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SN 61
K+ D N+G +GYGFV F R + NG S G+ +
Sbjct: 121 VKLIRDKNSGQLQGYGFVEFTSRAAAERVLQTYNGQMMPNVELTFRLNWASAGEKRDDTP 180
Query: 62 NATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVA 114
+ TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A
Sbjct: 181 DYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTEQARA 240
Query: 115 LQKLQGTAIGKQTVRL 130
+ ++ G + +R+
Sbjct: 241 MTEMNGMPCSSRPMRI 256
>gi|18416906|ref|NP_567764.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75331668|sp|Q93W34.1|RP45C_ARATH RecName: Full=Polyadenylate-binding protein RBP45C;
Short=Poly(A)-binding protein RBP45C; AltName:
Full=RNA-binding protein 45C; Short=AtRBP45C
gi|13878153|gb|AAK44154.1|AF370339_1 putative DNA binding protein [Arabidopsis thaliana]
gi|15450814|gb|AAK96678.1| putative DNA binding protein [Arabidopsis thaliana]
gi|17104569|gb|AAL34173.1| putative DNA binding protein [Arabidopsis thaliana]
gi|20259888|gb|AAM13291.1| putative DNA binding protein [Arabidopsis thaliana]
gi|332659882|gb|AEE85282.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 415
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 99/180 (55%), Gaps = 40/180 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
D+T+ +L ETF AKV D TG +KGYGFVRF DE+E+ RAM EMNG
Sbjct: 181 APDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYC 240
Query: 57 -------------------------------DGKSNNATIFVGALDSNVSDKDLRELFSH 85
+ N TIFVGA+D +V++ DL+ +F
Sbjct: 241 SSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQ 300
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
FGE++ VKIP GK CGFVQ+ANR AE AL L GT +G Q++RLSWG +P NKQ + D
Sbjct: 301 FGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQ 360
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 29/144 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA----------------- 63
AKV + G+++GYGF+ F + R + NG+ S+
Sbjct: 109 AKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQA 168
Query: 64 -----TIFVGALDSNVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFANRKDA 111
T+FVG L +V+D L E F + + + K+ KG GFV+FA+ +
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Query: 112 EVALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R N
Sbjct: 229 IRAMTEMNGQYCSSRPMRTGPAAN 252
>gi|293336608|ref|NP_001168401.1| uncharacterized protein LOC100382170 [Zea mays]
gi|223948043|gb|ACN28105.1| unknown [Zea mays]
gi|414585352|tpg|DAA35923.1| TPA: hypothetical protein ZEAMMB73_028165 [Zea mays]
Length = 432
Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 97/175 (55%), Gaps = 41/175 (23%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ +LQETF AKV D T TKGYGFV+FGD E++RAM EMNG
Sbjct: 191 ADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTEQARAMTEMNGMPCS 250
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
S+ NN TIFVG LD NV++ L+++FS
Sbjct: 251 SRPMRIGPAASRKNTGGVVQERVPNSQGAQSENDPNNTTIFVGGLDPNVTEDTLKQVFSP 310
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+GE++ VKIPVGK CGFVQF R AE AL LQG IG Q VRLSWG + NKQ
Sbjct: 311 YGEVVHVKIPVGKRCGFVQFVTRPSAEQALLMLQGALIGAQNVRLSWGRSLSNKQ 365
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SN 61
K+ D N+G +GYGFV F R + NG S G+ +
Sbjct: 121 VKLIRDKNSGQLQGYGFVEFTSRAAAERVLQTYNGQMMPNVDLTFRLNWASAGEKRDDTP 180
Query: 62 NATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVA 114
TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A
Sbjct: 181 EYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTEQARA 240
Query: 115 LQKLQGTAIGKQTVRL 130
+ ++ G + +R+
Sbjct: 241 MTEMNGMPCSSRPMRI 256
>gi|4455223|emb|CAB36546.1| putative DNA binding protein [Arabidopsis thaliana]
gi|7269553|emb|CAB79555.1| putative DNA binding protein [Arabidopsis thaliana]
Length = 427
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 99/180 (55%), Gaps = 40/180 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
D+T+ +L ETF AKV D TG +KGYGFVRF DE+E+ RAM EMNG
Sbjct: 181 APDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYC 240
Query: 57 -------------------------------DGKSNNATIFVGALDSNVSDKDLRELFSH 85
+ N TIFVGA+D +V++ DL+ +F
Sbjct: 241 SSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQ 300
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
FGE++ VKIP GK CGFVQ+ANR AE AL L GT +G Q++RLSWG +P NKQ + D
Sbjct: 301 FGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQ 360
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 29/138 (21%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA----------------- 63
AKV + G+++GYGF+ F + R + NG+ S+
Sbjct: 109 AKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQA 168
Query: 64 -----TIFVGALDSNVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFANRKDA 111
T+FVG L +V+D L E F + + + K+ KG GFV+FA+ +
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Query: 112 EVALQKLQGTAIGKQTVR 129
A+ ++ G + +R
Sbjct: 229 IRAMTEMNGQYCSSRPMR 246
>gi|21592583|gb|AAM64532.1| putative DNA binding protein [Arabidopsis thaliana]
Length = 404
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 104/189 (55%), Gaps = 42/189 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ IL ETF AKV I+ TG TKGYGFVRF DE+E+ RAM EMNG
Sbjct: 162 AADVTDYILLETFRASYPSVKGAKVVINRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPC 221
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
+D NN T+FVG LD++V+D L+ +FS
Sbjct: 222 STRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFS 281
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
+GEI+ VKIP GK CGFVQF+ + AE AL+ L G +G TVRLSWG +P NKQ GD
Sbjct: 282 QYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ-SGD 340
Query: 145 HINHWNGAH 153
+ G +
Sbjct: 341 PSQFYYGGY 349
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------G 58
AKV + TG +GYGF+ F R + N +
Sbjct: 90 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLXWASLSSGDKRD 149
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDA 111
S + TIFVG L ++V+D L E F + + + K+ + KG GFV+F++ +
Sbjct: 150 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVINRVTGRTKGYGFVRFSDESEQ 209
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 210 IRAMTEMNGVPCSTRPMRI 228
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE++S K+ K G GF++FA+ AE LQ
Sbjct: 62 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 121
Query: 118 LQGTAIGK---QTVRLSWG 133
I Q RL W
Sbjct: 122 FNNAPIPSFPDQLFRLXWA 140
>gi|302760919|ref|XP_002963882.1| hypothetical protein SELMODRAFT_80061 [Selaginella moellendorffii]
gi|300169150|gb|EFJ35753.1| hypothetical protein SELMODRAFT_80061 [Selaginella moellendorffii]
Length = 332
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 102/182 (56%), Gaps = 48/182 (26%)
Query: 7 SDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGK 59
+D+T+++L ETF SR AKV +D N+G +GYGFVRFGDE E+S AM EM+G
Sbjct: 116 ADVTDAMLLETFKSRYPSVKSAKVVMDVNSGRCRGYGFVRFGDETEKSSAMTEMHGVYCS 175
Query: 60 S-----------------------------------------NNATIFVGALDSNVSDKD 78
S N TIFVG LD NVS D
Sbjct: 176 SRPMRIRTATPKKQTQQHPVQRVSYQLVPAYAMPAPAGEDDFTNTTIFVGGLDQNVSLDD 235
Query: 79 LRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
L+++FS +GEI KIP G+GCGFVQF R AE AL+++ G+ IG+QTVRLSWG +P N
Sbjct: 236 LKDVFSPYGEIKYTKIPPGRGCGFVQFMTRASAEEALKQVHGSVIGQQTVRLSWGRHPAN 295
Query: 139 KQ 140
KQ
Sbjct: 296 KQ 297
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 27/151 (17%)
Query: 7 SDITNSILQETFSRAKVTIDSNTGHTKGYGFVRF--------------GDENERSRAMIE 52
S + + Q T KV + TGH +GYGFV F G R+
Sbjct: 31 SYLKSCFPQSTIVSTKVIRNKITGHHEGYGFVEFESHAAAEKALQSFTGAVMPRTEQAFR 90
Query: 53 MN----GSDGKSNNA--TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KG 99
+N G D + + A +IFVG L ++V+D L E F S + + S K+ + +G
Sbjct: 91 LNWACVGGDKRDSGADDSIFVGDLAADVTDAMLLETFKSRYPSVKSAKVVMDVNSGRCRG 150
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
GFV+F + + A+ ++ G + +R+
Sbjct: 151 YGFVRFGDETEKSSAMTEMHGVYCSSRPMRI 181
>gi|302813198|ref|XP_002988285.1| hypothetical protein SELMODRAFT_447249 [Selaginella moellendorffii]
gi|300144017|gb|EFJ10704.1| hypothetical protein SELMODRAFT_447249 [Selaginella moellendorffii]
Length = 352
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 102/182 (56%), Gaps = 48/182 (26%)
Query: 7 SDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGK 59
+D+T+++L ETF SR AKV +D N+G +GYGFVRFGDE E+S AM EM+G
Sbjct: 116 ADVTDAMLLETFKSRYPSVKSAKVVMDVNSGRCRGYGFVRFGDEAEKSSAMTEMHGVYCS 175
Query: 60 S-----------------------------------------NNATIFVGALDSNVSDKD 78
S N TIFVG LD NVS D
Sbjct: 176 SRPMRIRTATPKKQTQQHPVQRVSYQLVPAYAMPAPAGEDDFTNTTIFVGGLDQNVSLDD 235
Query: 79 LRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
L+++FS +GEI KIP G+GCGFVQF R AE AL+++ G+ IG+QTVRLSWG +P N
Sbjct: 236 LKDVFSPYGEIKYTKIPPGRGCGFVQFMTRASAEEALKQVHGSVIGQQTVRLSWGRHPAN 295
Query: 139 KQ 140
KQ
Sbjct: 296 KQ 297
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 27/151 (17%)
Query: 7 SDITNSILQETFSRAKVTIDSNTGHTKGYGFVRF--------------GDENERSRAMIE 52
S + + Q T KV + TGH +GYGFV F G R+
Sbjct: 31 SYLKSCFPQSTIVSTKVIRNKITGHHEGYGFVEFESHAAAEKALQSFTGAVMPRTEQAFR 90
Query: 53 MN----GSDGKSNNA--TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KG 99
+N G D + + A +IFVG L ++V+D L E F S + + S K+ + +G
Sbjct: 91 LNWACVGGDKRDSGADDSIFVGDLAADVTDAMLLETFKSRYPSVKSAKVVMDVNSGRCRG 150
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
GFV+F + + A+ ++ G + +R+
Sbjct: 151 YGFVRFGDEAEKSSAMTEMHGVYCSSRPMRI 181
>gi|413919584|gb|AFW59516.1| hypothetical protein ZEAMMB73_768040, partial [Zea mays]
Length = 428
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 96/176 (54%), Gaps = 41/176 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ +LQETF AKV D T TKGYGFV+FGD E++RAM EMNG
Sbjct: 184 AADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTEQARAMTEMNGMPC 243
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
S+ NN TIFVG LD NV++ L++ FS
Sbjct: 244 SSRPMRIGPAASRKNAGGVVQERVPNSQGAQSENDPNNTTIFVGGLDPNVTEDVLKQAFS 303
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+GE++ VKIPVGK CGFVQF R AE AL LQG IG Q VRLSWG + NKQ
Sbjct: 304 PYGEVIHVKIPVGKRCGFVQFVTRPSAEQALLMLQGALIGAQNVRLSWGRSLSNKQ 359
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 26/135 (19%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D N+G +GYGFV F R + NG S G+ + +
Sbjct: 116 KLIRDKNSGQLQGYGFVEFTSRAAAERVLQTYNGQMMPNVDLTFRLNWASAGEKRDDTPD 175
Query: 63 ATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPVG------KGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A+
Sbjct: 176 YTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTEQARAM 235
Query: 116 QKLQGTAIGKQTVRL 130
++ G + +R+
Sbjct: 236 TEMNGMPCSSRPMRI 250
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + D + FS+ GE+ +VK+ K G GFV+F +R AE LQ
Sbjct: 87 TLWIGDLQYWMDDNYVFGCFSNTGEVQNVKLIRDKNSGQLQGYGFVEFTSRAAAERVLQT 146
Query: 118 LQGTAIGK--QTVRLSW 132
G + T RL+W
Sbjct: 147 YNGQMMPNVDLTFRLNW 163
>gi|212722596|ref|NP_001131852.1| uncharacterized protein LOC100193230 [Zea mays]
gi|194692726|gb|ACF80447.1| unknown [Zea mays]
gi|413919585|gb|AFW59517.1| hypothetical protein ZEAMMB73_768040 [Zea mays]
Length = 434
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 96/175 (54%), Gaps = 41/175 (23%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ +LQETF AKV D T TKGYGFV+FGD E++RAM EMNG
Sbjct: 185 ADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTEQARAMTEMNGMPCS 244
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
S+ NN TIFVG LD NV++ L++ FS
Sbjct: 245 SRPMRIGPAASRKNAGGVVQERVPNSQGAQSENDPNNTTIFVGGLDPNVTEDVLKQAFSP 304
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+GE++ VKIPVGK CGFVQF R AE AL LQG IG Q VRLSWG + NKQ
Sbjct: 305 YGEVIHVKIPVGKRCGFVQFVTRPSAEQALLMLQGALIGAQNVRLSWGRSLSNKQ 359
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 26/135 (19%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D N+G +GYGFV F R + NG S G+ + +
Sbjct: 116 KLIRDKNSGQLQGYGFVEFTSRAAAERVLQTYNGQMMPNVDLTFRLNWASAGEKRDDTPD 175
Query: 63 ATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A+
Sbjct: 176 YTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTEQARAM 235
Query: 116 QKLQGTAIGKQTVRL 130
++ G + +R+
Sbjct: 236 TEMNGMPCSSRPMRI 250
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + D + FS+ GE+ +VK+ K G GFV+F +R AE LQ
Sbjct: 87 TLWIGDLQYWMDDNYVFGCFSNTGEVQNVKLIRDKNSGQLQGYGFVEFTSRAAAERVLQT 146
Query: 118 LQGTAIGK--QTVRLSW 132
G + T RL+W
Sbjct: 147 YNGQMMPNVDLTFRLNW 163
>gi|297844004|ref|XP_002889883.1| ATRBP45B [Arabidopsis lyrata subsp. lyrata]
gi|297335725|gb|EFH66142.1| ATRBP45B [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 97/176 (55%), Gaps = 41/176 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ IL ETF AKV ID TG TKGYGFVRF DE+E+ RAM EMNG
Sbjct: 165 AADVTDYILLETFRASYPSVKGAKVVIDRATGRTKGYGFVRFSDESEQIRAMTEMNGVPC 224
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
+D NN T+FVG LD +V+D L+ +F
Sbjct: 225 STRPMRIGPAASKKGVTGQRDSYQSAAGGVPTDNDPNNTTVFVGGLDQSVTDDHLKNVFG 284
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+GEI+ VKIP GK CGFVQF+ + AE AL+ L G +G TVRLSWG +P NKQ
Sbjct: 285 QYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 340
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------G 58
AKV + TG +GYGF+ F R + N +
Sbjct: 93 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD 152
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDA 111
S + TIFVG L ++V+D L E F + + + K+ + KG GFV+F++ +
Sbjct: 153 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRATGRTKGYGFVRFSDESEQ 212
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 213 IRAMTEMNGVPCSTRPMRI 231
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE++S K+ K G GF++FA+ AE LQ
Sbjct: 65 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 124
Query: 118 LQGTAIGK---QTVRLSWG 133
I Q RL+W
Sbjct: 125 FNNAPIPSFPDQLFRLNWA 143
>gi|357116772|ref|XP_003560152.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 470
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 103/195 (52%), Gaps = 46/195 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+S+LQE F A V D TG +KGYGFVRFGD NE++RAM EMNG
Sbjct: 217 ASDVTDSMLQEIFKASYPSVRGANVVTDRATGRSKGYGFVRFGDVNEQTRAMTEMNGVTL 276
Query: 56 -------------------------------SDGK-----SNNATIFVGALDSNVSDKDL 79
S G NN TIFVG LDSN+ + L
Sbjct: 277 SSRQLRIGPAANKKNMGTQQTYSTNGYQSQSSQGNDVQNDPNNTTIFVGGLDSNIDENYL 336
Query: 80 RELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
R++F+ +GE+ VKIPVGK CGFVQF +R AE A+ L GT IG VRLSWG + NK
Sbjct: 337 RQVFTPYGEVGYVKIPVGKRCGFVQFTSRSCAEEAINALNGTPIGGNNVRLSWGRSTQNK 396
Query: 140 QWRGDHINHWNGAHY 154
Q N NG++Y
Sbjct: 397 QAPQQDANQGNGSNY 411
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 33/146 (22%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN--------------------- 54
+ + K+ + TG +GYGF+ F A+ N
Sbjct: 140 QQVASVKIIRNKQTGQPEGYGFIEFHSRAAAEYALASFNGHAMPNVDLPFKLNWASASAG 199
Query: 55 ---GSDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQ 104
G DG + TIFVG L S+V+D L+E+F + + + + KG GFV+
Sbjct: 200 DRRGDDGSDH--TIFVGDLASDVTDSMLQEIFKASYPSVRGANVVTDRATGRSKGYGFVR 257
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRL 130
F + + A+ ++ G + + +R+
Sbjct: 258 FGDVNEQTRAMTEMNGVTLSSRQLRI 283
>gi|414886904|tpg|DAA62918.1| TPA: hypothetical protein ZEAMMB73_604225 [Zea mays]
Length = 484
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 110/194 (56%), Gaps = 48/194 (24%)
Query: 8 DITNSILQETFSRAK--------VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+S+L++ F RAK V +D TG KG+GFVRFGD NE++RAM EMNG
Sbjct: 219 DVTDSMLEDVF-RAKYPSVRGANVVVDRMTGWPKGFGFVRFGDLNEQARAMTEMNGMLLS 277
Query: 56 ----------------------------------SDGKSNNATIFVGALDSNVSDKDLRE 81
S+ NN T+FVG LDSNV+++ LR+
Sbjct: 278 TRQMRIGAAANKKNRDAQQTYATDGAYQSSKGNSSENDPNNTTVFVGGLDSNVNEEYLRQ 337
Query: 82 LFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQW 141
+F+ +GEI VKIPVGK CGFVQF +R AE A++ L G+ +G Q VRLSWG +P N+Q
Sbjct: 338 IFTPYGEISYVKIPVGKHCGFVQFTSRSCAEEAIRMLNGSQVGGQKVRLSWGRSPQNRQA 397
Query: 142 -RGDHINHWNGAHY 154
+ D N +NG Y
Sbjct: 398 SQHDANNQYNGNSY 411
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 29/157 (18%)
Query: 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------- 55
+ + + + K+ + TGH++GYGF+ F ++ NG
Sbjct: 136 AAVAQQIASVKIIRNKQTGHSEGYGFIEFYSRAAAEHTLMNFNGQMMPNVEMTFKLNWAS 195
Query: 56 -SDG-----KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGF 102
S G ++ TIFVG L +V+D L ++F + + + + V KG GF
Sbjct: 196 ASTGDKRGDSGSDRTIFVGDLAHDVTDSMLEDVFRAKYPSVRGANVVVDRMTGWPKGFGF 255
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
V+F + + A+ ++ G + + +R+ N N+
Sbjct: 256 VRFGDLNEQARAMTEMNGMLLSTRQMRIGAAANKKNR 292
>gi|226491568|ref|NP_001142233.1| uncharacterized protein LOC100274401 [Zea mays]
gi|194707728|gb|ACF87948.1| unknown [Zea mays]
gi|414886903|tpg|DAA62917.1| TPA: hypothetical protein ZEAMMB73_604225 [Zea mays]
Length = 465
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 110/194 (56%), Gaps = 48/194 (24%)
Query: 8 DITNSILQETFSRAK--------VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+S+L++ F RAK V +D TG KG+GFVRFGD NE++RAM EMNG
Sbjct: 219 DVTDSMLEDVF-RAKYPSVRGANVVVDRMTGWPKGFGFVRFGDLNEQARAMTEMNGMLLS 277
Query: 56 ----------------------------------SDGKSNNATIFVGALDSNVSDKDLRE 81
S+ NN T+FVG LDSNV+++ LR+
Sbjct: 278 TRQMRIGAAANKKNRDAQQTYATDGAYQSSKGNSSENDPNNTTVFVGGLDSNVNEEYLRQ 337
Query: 82 LFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQW 141
+F+ +GEI VKIPVGK CGFVQF +R AE A++ L G+ +G Q VRLSWG +P N+Q
Sbjct: 338 IFTPYGEISYVKIPVGKHCGFVQFTSRSCAEEAIRMLNGSQVGGQKVRLSWGRSPQNRQA 397
Query: 142 -RGDHINHWNGAHY 154
+ D N +NG Y
Sbjct: 398 SQHDANNQYNGNSY 411
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 29/157 (18%)
Query: 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------- 55
+ + + + K+ + TGH++GYGF+ F ++ NG
Sbjct: 136 AAVAQQIASVKIIRNKQTGHSEGYGFIEFYSRAAAEHTLMNFNGQMMPNVEMTFKLNWAS 195
Query: 56 -SDG-----KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGF 102
S G ++ TIFVG L +V+D L ++F + + + + V KG GF
Sbjct: 196 ASTGDKRGDSGSDRTIFVGDLAHDVTDSMLEDVFRAKYPSVRGANVVVDRMTGWPKGFGF 255
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
V+F + + A+ ++ G + + +R+ N N+
Sbjct: 256 VRFGDLNEQARAMTEMNGMLLSTRQMRIGAAANKKNR 292
>gi|75334880|sp|Q9LEB4.1|RBP45_NICPL RecName: Full=Polyadenylate-binding protein RBP45;
Short=Poly(A)-binding protein RBP45; AltName:
Full=RNA-binding protein 45; Short=NplRBP45
gi|9663767|emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plumbaginifolia]
Length = 409
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 100/176 (56%), Gaps = 41/176 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ ILQETF AKV D TG +KGYGFV+F DE+E+ RAM EMNG
Sbjct: 184 AADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLC 243
Query: 56 -----------------------------SDGKS--NNATIFVGALDSNVSDKDLRELFS 84
+ G+S NN TIFVG LD V+++ LR++FS
Sbjct: 244 STRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFS 303
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+GE++ VKI GK CGFVQF R AE AL L GT +G Q++RLSWG +P +KQ
Sbjct: 304 PYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQ 359
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 28/143 (19%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-------------------DGKSN 61
AKV + TG ++GYGF+ F + NG+ + + +
Sbjct: 113 AKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDD 172
Query: 62 NA--TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+A TIFVG L ++V+D L+E F S + + K+ KG GFV+FA+ +
Sbjct: 173 SAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQL 232
Query: 113 VALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 233 RAMTEMNGVLCSTRPMRIGPAAN 255
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 49 AMIEMNGSDGKSNNA----TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------ 98
AM N + + N ++++G L + + L F H GE++S K+ K
Sbjct: 66 AMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSE 125
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIG--KQTVRLSWG 133
G GF++F + AE LQ GT + +Q R++W
Sbjct: 126 GYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWA 162
>gi|223948225|gb|ACN28196.1| unknown [Zea mays]
gi|414590425|tpg|DAA40996.1| TPA: hypothetical protein ZEAMMB73_114709 [Zea mays]
Length = 503
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 106/195 (54%), Gaps = 46/195 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+S+L++ F AKV +D TG KGYGFV FGD NE++RAM EMNG
Sbjct: 249 APDVTDSMLEDVFRANYPSVRGAKVVVDRITGRPKGYGFVHFGDLNEQARAMTEMNGMML 308
Query: 56 -----------------------------------SDGKSNNATIFVGALDSNVSDKDLR 80
S+ NN T+FVG LDSNV ++ LR
Sbjct: 309 STRKMRIGAAASKKNTDAQQTYATNGAYQSSQGNCSENDPNNTTVFVGGLDSNVDEEYLR 368
Query: 81 ELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
++F+ +GEI VKIPVGK CGFVQF +R AE A+Q L G+ IG Q RLSWG + N+Q
Sbjct: 369 QIFTPYGEISYVKIPVGKHCGFVQFTSRSCAEEAIQMLNGSQIGGQKARLSWGRSTQNRQ 428
Query: 141 W-RGDHINHWNGAHY 154
+ D + +NG +Y
Sbjct: 429 ASQHDANSQYNGNNY 443
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 29/148 (19%)
Query: 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------------- 56
+ + + + K+ + TGH++GYGF+ F + ++ NG
Sbjct: 168 APVAQQIASVKIIRNKQTGHSEGYGFIEFYSQAAAEHTLMNFNGQMMPNIEMAFKLNWAS 227
Query: 57 ----DGKSNNAT---IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGF 102
D + +N + IFVG L +V+D L ++F +++ + K+ V KG GF
Sbjct: 228 ASTGDKRGDNGSDHAIFVGDLAPDVTDSMLEDVFRANYPSVRGAKVVVDRITGRPKGYGF 287
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRL 130
V F + + A+ ++ G + + +R+
Sbjct: 288 VHFGDLNEQARAMTEMNGMMLSTRKMRI 315
>gi|212276053|ref|NP_001130512.1| uncharacterized protein LOC100191611 [Zea mays]
gi|194689348|gb|ACF78758.1| unknown [Zea mays]
gi|414590424|tpg|DAA40995.1| TPA: hypothetical protein ZEAMMB73_114709 [Zea mays]
Length = 472
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 106/195 (54%), Gaps = 46/195 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+S+L++ F AKV +D TG KGYGFV FGD NE++RAM EMNG
Sbjct: 218 APDVTDSMLEDVFRANYPSVRGAKVVVDRITGRPKGYGFVHFGDLNEQARAMTEMNGMML 277
Query: 56 -----------------------------------SDGKSNNATIFVGALDSNVSDKDLR 80
S+ NN T+FVG LDSNV ++ LR
Sbjct: 278 STRKMRIGAAASKKNTDAQQTYATNGAYQSSQGNCSENDPNNTTVFVGGLDSNVDEEYLR 337
Query: 81 ELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
++F+ +GEI VKIPVGK CGFVQF +R AE A+Q L G+ IG Q RLSWG + N+Q
Sbjct: 338 QIFTPYGEISYVKIPVGKHCGFVQFTSRSCAEEAIQMLNGSQIGGQKARLSWGRSTQNRQ 397
Query: 141 W-RGDHINHWNGAHY 154
+ D + +NG +Y
Sbjct: 398 ASQHDANSQYNGNNY 412
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 29/148 (19%)
Query: 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------------- 56
+ + + + K+ + TGH++GYGF+ F + ++ NG
Sbjct: 137 APVAQQIASVKIIRNKQTGHSEGYGFIEFYSQAAAEHTLMNFNGQMMPNIEMAFKLNWAS 196
Query: 57 ----DGKSNNAT---IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGF 102
D + +N + IFVG L +V+D L ++F +++ + K+ V KG GF
Sbjct: 197 ASTGDKRGDNGSDHAIFVGDLAPDVTDSMLEDVFRANYPSVRGAKVVVDRITGRPKGYGF 256
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRL 130
V F + + A+ ++ G + + +R+
Sbjct: 257 VHFGDLNEQARAMTEMNGMMLSTRKMRI 284
>gi|302795494|ref|XP_002979510.1| hypothetical protein SELMODRAFT_111082 [Selaginella moellendorffii]
gi|300152758|gb|EFJ19399.1| hypothetical protein SELMODRAFT_111082 [Selaginella moellendorffii]
Length = 432
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 103/212 (48%), Gaps = 68/212 (32%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENER------------- 46
D+T+ +L ETF AKV ID+ TG +KGYGFVRF DENER
Sbjct: 130 PDVTDYMLHETFRTRFPSVRGAKVVIDAVTGRSKGYGFVRFADENERARAMSEMNGVYCS 189
Query: 47 SRAM------------------------------------------IEMNGSDGKSNNAT 64
SR M ++ D N T
Sbjct: 190 SRPMRISAATPKKAMAAGLTTVTAATIVPQPTIASPITPPPSLSIQSQVLPPDSDPTNTT 249
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIG 124
IFVG LD N++++++++ FSH GE++SVKIP GKGC FVQ+A R AE ALQ+L GT IG
Sbjct: 250 IFVGGLDLNITEEEVKQTFSHIGELVSVKIPPGKGCAFVQYAQRNSAEDALQRLHGTVIG 309
Query: 125 KQTVRLSWGHNPGNKQ------WRGDHINHWN 150
+Q +RLSWG +P + + WR WN
Sbjct: 310 QQAIRLSWGRSPTSTKQAPTSPWRDAAQTQWN 341
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 29/140 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN------------------- 61
AKV + TG+ +GYGF+ F R ++ NG+
Sbjct: 57 AKVIRNKQTGYPEGYGFIEFNSHPAAERVLLAYNGTQMPQTEQAFRLNWASFGMGEKRMD 116
Query: 62 ---NATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+IFVG L +V+D L E F + F + K+ + KG GFV+FA+ +
Sbjct: 117 GGPELSIFVGDLAPDVTDYMLHETFRTRFPSVRGAKVVIDAVTGRSKGYGFVRFADENER 176
Query: 112 EVALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 177 ARAMSEMNGVYCSSRPMRIS 196
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + LR LF+H GE+LS K+ K G GF++F + AE L
Sbjct: 29 TLWIGDLQYWMDENYLRNLFAHTGEVLSAKVIRNKQTGYPEGYGFIEFNSHPAAERVLLA 88
Query: 118 LQGTAIGK--QTVRLSWG 133
GT + + Q RL+W
Sbjct: 89 YNGTQMPQTEQAFRLNWA 106
>gi|356550323|ref|XP_003543537.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Glycine max]
Length = 410
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 103/204 (50%), Gaps = 59/204 (28%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D NT +KGYGFV+F DENER+RAM EMNG
Sbjct: 116 PDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERNRAMTEMNGVYCS 175
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
D NN TIFVG LD
Sbjct: 176 TRPMRISAATPKKTTGAYAAPAAPVPKPVYPVPAYTSPVVQVQPPDYDVNNTTIFVGNLD 235
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
NVS+++L++ FGEI+SVKI GKG GFVQF R AE A+QK+QG IG+Q VR+S
Sbjct: 236 LNVSEEELKQNSLQFGEIVSVKIQPGKGFGFVQFGTRASAEEAIQKMQGKMIGQQVVRIS 295
Query: 132 WGHNPGNKQWRGDHINHWNGAHYG 155
WG +Q N W+ A+YG
Sbjct: 296 WGRTLTARQM---DPNQWS-AYYG 315
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + TG +GYGFV F R + NG+ + + T
Sbjct: 44 KIIRNKLTGQPEGYGFVEFVSHAAAERVLQTYNGTQMPATDQTFRLNWASFGIGERRPDA 103
Query: 65 -----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F +H+ + K+ KG GFV+F++ +
Sbjct: 104 APEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERN 163
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 164 RAMTEMNGVYCSTRPMRIS 182
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L F H GE++S+KI K G GFV+F + AE LQ
Sbjct: 15 TLWIGDLQYWVDEGYLSHCFGHTGEVISIKIIRNKLTGQPEGYGFVEFVSHAAAERVLQT 74
Query: 118 LQGTAIGK--QTVRLSWG 133
GT + QT RL+W
Sbjct: 75 YNGTQMPATDQTFRLNWA 92
>gi|356557398|ref|XP_003547003.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 404
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 106/211 (50%), Gaps = 64/211 (30%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
DIT+ +LQE F AKV D NTG +KGYGFV+F DENER+RAM EMNG
Sbjct: 101 PDITDYLLQEMFRAHYPSVRGAKVVSDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCS 160
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
+ NN IFVG LD
Sbjct: 161 TRPMRISAATPKKTTSAYAAPAAPVPKPVYPVPAYTAPVVQVQPPEYDVNNTAIFVGNLD 220
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
NVS+++L++ F FGEI+SVK+ GKGCGFVQF R AE A+QK+Q IG+Q VR+S
Sbjct: 221 LNVSEEELKQNFLQFGEIVSVKVQSGKGCGFVQFGTRASAEEAIQKMQEKMIGQQVVRIS 280
Query: 132 WGHNPGNKQ-----WRGDHI--NHWNGAHYG 155
WG +Q W G + N W+ A+YG
Sbjct: 281 WGRTLTARQDLPGGW-GPQMDPNQWS-AYYG 309
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 24/134 (17%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG--------------KSNNA---T 64
K+ + TG +GYGFV F R + N +D + + A +
Sbjct: 34 KIIRNELTGQPEGYGFVEFVSHATAERVLQTYNATDQTFRLNWASFGIGERRPDAALEHS 93
Query: 65 IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQK 117
IFVG L +++D L+E+F +H+ + K+ KG GFV+F++ + A+ +
Sbjct: 94 IFVGDLAPDITDYLLQEMFRAHYPSVRGAKVVSDPNTGRSKGYGFVKFSDENERNRAMTE 153
Query: 118 LQGTAIGKQTVRLS 131
+ G + +R+S
Sbjct: 154 MNGVYCSTRPMRIS 167
>gi|356550321|ref|XP_003543536.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Glycine max]
Length = 419
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 106/211 (50%), Gaps = 64/211 (30%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D NT +KGYGFV+F DENER+RAM EMNG
Sbjct: 116 PDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERNRAMTEMNGVYCS 175
Query: 56 --------------------------------------------SDGKSNNATIFVGALD 71
D NN TIFVG LD
Sbjct: 176 TRPMRISAATPKKTTGAYAAPAAPVPKPVYPVPAYTSPVVQVQPPDYDVNNTTIFVGNLD 235
Query: 72 SNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
NVS+++L++ FGEI+SVKI GKG GFVQF R AE A+QK+QG IG+Q VR+S
Sbjct: 236 LNVSEEELKQNSLQFGEIVSVKIQPGKGFGFVQFGTRASAEEAIQKMQGKMIGQQVVRIS 295
Query: 132 WGHNPGNKQ-----WRGDHI--NHWNGAHYG 155
WG +Q W G + N W+ A+YG
Sbjct: 296 WGRTLTARQDLPGGW-GPQMDPNQWS-AYYG 324
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + TG +GYGFV F R + NG+ + + T
Sbjct: 44 KIIRNKLTGQPEGYGFVEFVSHAAAERVLQTYNGTQMPATDQTFRLNWASFGIGERRPDA 103
Query: 65 -----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F +H+ + K+ KG GFV+F++ +
Sbjct: 104 APEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERN 163
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 164 RAMTEMNGVYCSTRPMRIS 182
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L F H GE++S+KI K G GFV+F + AE LQ
Sbjct: 15 TLWIGDLQYWVDEGYLSHCFGHTGEVISIKIIRNKLTGQPEGYGFVEFVSHAAAERVLQT 74
Query: 118 LQGTAIGK--QTVRLSWG 133
GT + QT RL+W
Sbjct: 75 YNGTQMPATDQTFRLNWA 92
>gi|255073999|ref|XP_002500674.1| predicted protein [Micromonas sp. RCC299]
gi|226515937|gb|ACO61932.1| predicted protein [Micromonas sp. RCC299]
Length = 440
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 90/174 (51%), Gaps = 48/174 (27%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
++ + LQETF+ A+V D NTG +KG+GFVRFGDE ER RA++EMNG
Sbjct: 118 PEVNDYALQETFAERYPSVRNARVVTDPNTGRSKGFGFVRFGDEGERDRALVEMNGVPCG 177
Query: 56 -------------------------------------SDGKSNNATIFVGALDSNVSDKD 78
+ N+T+FVG LD +++ D
Sbjct: 178 SRVMRISLAIPRKGVDGVGGGGVGSNTGVGSNGVGGSPAPEPENSTVFVGGLDPTLTEPD 237
Query: 79 LRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
LR F FGE++ VKIP GKGCGFVQF R DAE ++Q L GT +G VRLSW
Sbjct: 238 LRTHFEAFGELVYVKIPAGKGCGFVQFTRRADAEASIQALNGTMMGASRVRLSW 291
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 32/142 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS--------------------- 60
K+ + TG ++GYGFV F D A+ +NG+ S
Sbjct: 43 KIIRNKQTGFSEGYGFVEFVDRATAEHALKTLNGTPMPSAHQNFRLNWASFGVGGGAGGA 102
Query: 61 ----NNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRK 109
N+ ++FVG L V+D L+E F+ + + + ++ KG GFV+F +
Sbjct: 103 GGAANDHSVFVGDLPPEVNDYALQETFAERYPSVRNARVVTDPNTGRSKGFGFVRFGDEG 162
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
+ + AL ++ G G + +R+S
Sbjct: 163 ERDRALVEMNGVPCGSRVMRIS 184
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L F+HFG I SVKI K G GFV+F +R AE AL+
Sbjct: 14 TLWVGDLGYWMEESYLHTCFAHFGAIGSVKIIRNKQTGFSEGYGFVEFVDRATAEHALKT 73
Query: 118 LQGTAI--GKQTVRLSW 132
L GT + Q RL+W
Sbjct: 74 LNGTPMPSAHQNFRLNW 90
>gi|302794528|ref|XP_002979028.1| hypothetical protein SELMODRAFT_418663 [Selaginella moellendorffii]
gi|302806386|ref|XP_002984943.1| hypothetical protein SELMODRAFT_424039 [Selaginella moellendorffii]
gi|300147529|gb|EFJ14193.1| hypothetical protein SELMODRAFT_424039 [Selaginella moellendorffii]
gi|300153346|gb|EFJ19985.1| hypothetical protein SELMODRAFT_418663 [Selaginella moellendorffii]
Length = 408
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 97/191 (50%), Gaps = 53/191 (27%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG 58
D+T+ +LQETF AKV D TG +KGYGFVRF D++ER RAM EMNG
Sbjct: 121 APDVTDYMLQETFRTRYPSVRGAKVVTDVATGRSKGYGFVRFADDSERVRAMSEMNGIYC 180
Query: 59 KSNN-----------------------------------------ATIFVGALDSNVSDK 77
S TIFVG LD VS++
Sbjct: 181 SSRPMRINAATPKKALIPSAPAPQKVTTFATSPLQNVPNDNDPNNTTIFVGGLDPAVSEE 240
Query: 78 DLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
+L++ F FGE++ VKIP GKGCGFVQF +R AE AL KL GT I +Q +RLSWG
Sbjct: 241 ELQKTFGEFGELVYVKIPPGKGCGFVQFTHRSCAEEALGKLHGTMIRQQAIRLSWGRT-A 299
Query: 138 NKQ----WRGD 144
NKQ W GD
Sbjct: 300 NKQYPAGWGGD 310
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 11 NSILQET--FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------ 56
NSI T AK+ + +G +GYGFV F R + G+
Sbjct: 37 NSIFSSTGELVSAKIIRNKASGFPEGYGFVEFASHACAERVLTAFTGTQMPQTEQLFRLN 96
Query: 57 -----------DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GK 98
+G N +IFVG L +V+D L+E F + + + K+ K
Sbjct: 97 WAYFGIGERRPEGGPEN-SIFVGDLAPDVTDYMLQETFRTRYPSVRGAKVVTDVATGRSK 155
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
G GFV+FA+ + A+ ++ G + +R+
Sbjct: 156 GYGFVRFADDSERVRAMSEMNGIYCSSRPMRI 187
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L +FS GE++S KI K G GFV+FA+ AE L
Sbjct: 21 TLWVGDLQYWMDESYLNSIFSSTGELVSAKIIRNKASGFPEGYGFVEFASHACAERVLTA 80
Query: 118 LQGTAIGK--QTVRLSWGH 134
GT + + Q RL+W +
Sbjct: 81 FTGTQMPQTEQLFRLNWAY 99
>gi|145334517|ref|NP_001078604.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332005307|gb|AED92690.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 421
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 99/198 (50%), Gaps = 55/198 (27%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D +TG +KGYGFV+F +E+ER+RAM EMNG
Sbjct: 125 PDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCS 184
Query: 56 -----------------------------------------SDGKSNNATIFVGALDSNV 74
+ TI V LD NV
Sbjct: 185 TRPMRISAATPKKNVGVQQQYVTKVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNV 244
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++++L++ FS GE++ VKIP KG G+VQF R AE A+Q++QG IG+Q VR+SW
Sbjct: 245 TEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSK 304
Query: 135 NPGNKQW--RGDHINHWN 150
NPG W + D N WN
Sbjct: 305 NPGQDGWVTQADP-NQWN 321
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 28/138 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
KV + TG +GYGF+ F R + NG+ T
Sbjct: 54 KVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAG 113
Query: 65 ----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
IFVG L +V+D L+E F H+ + K+ KG GFV+FA +
Sbjct: 114 PDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNR 173
Query: 114 ALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 174 AMAEMNGLYCSTRPMRIS 191
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L FS GE++SVK+ K G GF++F + AE LQ
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + + T RL+W
Sbjct: 85 YNGTQMPGTELTFRLNWA 102
>gi|297807995|ref|XP_002871881.1| hypothetical protein ARALYDRAFT_488820 [Arabidopsis lyrata subsp.
lyrata]
gi|297317718|gb|EFH48140.1| hypothetical protein ARALYDRAFT_488820 [Arabidopsis lyrata subsp.
lyrata]
Length = 426
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 100/203 (49%), Gaps = 59/203 (29%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D +TG +KGYGFV+F +E+ER+RAM EMNG
Sbjct: 124 PDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCS 183
Query: 56 ----------------------SDGKSNNA-------------------------TIFVG 68
+ G +A TI +
Sbjct: 184 TRPMRISAATPKKNVGVQQQYVTKGPVPSAVAAPVQAYIAQPGQGLPPESDVTCTTISIA 243
Query: 69 ALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
LD NV++++L++ FS GEI+ VKIP KG G+VQF R AE A+QK+QG IG+Q V
Sbjct: 244 NLDPNVTEEELKKAFSQLGEIIYVKIPATKGYGYVQFKTRPSAEEAVQKMQGQVIGQQAV 303
Query: 129 RLSWGHNPGNKQWRGD-HINHWN 150
R+SW NPG W N WN
Sbjct: 304 RISWSKNPGQDGWVAQADPNQWN 326
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 28/138 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
KV + TG +GYGF+ F R + NG+ T
Sbjct: 53 KVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAG 112
Query: 65 ----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
IFVG L +V+D L+E F H+ + K+ KG GFV+FA +
Sbjct: 113 PDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNR 172
Query: 114 ALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 173 AMAEMNGLYCSTRPMRIS 190
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L FS GE++SVK+ K G GF++F + AE LQ
Sbjct: 24 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 83
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + + T RL+W
Sbjct: 84 YNGTQMPGTELTFRLNWA 101
>gi|15239715|ref|NP_197436.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75331115|sp|Q8VXZ9.1|R47BP_ARATH RecName: Full=Polyadenylate-binding protein RBP47B';
Short=Poly(A)-binding protein RBP47B'; AltName:
Full=RNA-binding protein 47B'; Short=AtRBP47B prime;
Short=AtRBP47B'
gi|18377731|gb|AAL67015.1| putative DNA binding protein ACBF [Arabidopsis thaliana]
gi|21281189|gb|AAM45052.1| putative DNA binding protein ACBF [Arabidopsis thaliana]
gi|332005306|gb|AED92689.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 425
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 99/202 (49%), Gaps = 59/202 (29%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D +TG +KGYGFV+F +E+ER+RAM EMNG
Sbjct: 125 PDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCS 184
Query: 56 ---------------------------------------------SDGKSNNATIFVGAL 70
+ TI V L
Sbjct: 185 TRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANL 244
Query: 71 DSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
D NV++++L++ FS GE++ VKIP KG G+VQF R AE A+Q++QG IG+Q VR+
Sbjct: 245 DQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRI 304
Query: 131 SWGHNPGNKQW--RGDHINHWN 150
SW NPG W + D N WN
Sbjct: 305 SWSKNPGQDGWVTQADP-NQWN 325
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 28/138 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
KV + TG +GYGF+ F R + NG+ T
Sbjct: 54 KVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAG 113
Query: 65 ----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
IFVG L +V+D L+E F H+ + K+ KG GFV+FA +
Sbjct: 114 PDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNR 173
Query: 114 ALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 174 AMAEMNGLYCSTRPMRIS 191
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L FS GE++SVK+ K G GF++F + AE LQ
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + + T RL+W
Sbjct: 85 YNGTQMPGTELTFRLNWA 102
>gi|357111822|ref|XP_003557709.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 361
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 8 DITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L F AK+ D G +KGYGFV FGD NER +AM EMNG
Sbjct: 152 DVTDFMLHHVFKSRYPSVKHAKIAWDHFNGRSKGYGFVVFGDVNERRQAMTEMNGAYCST 211
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
SD SNN +FVG LD V+D+DL++ FS +GE+ VK+ GK C
Sbjct: 212 RPMRVGPATKMAGKYSDSDSNNTRLFVGGLDRIVTDEDLKKAFSPYGELTEVKVIAGKKC 271
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
GFV + NR AE A++ L G+ +G T+R+SWG + +KQ + D N WNG G
Sbjct: 272 GFVTYLNRASAEEAMRILNGSLLGDNTIRISWGRSLYHKQ-KHDQ-NQWNGERQG 324
>gi|149391493|gb|ABR25764.1| nucleic acid binding protein [Oryza sativa Indica Group]
Length = 151
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 73/100 (73%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
SDG S N T++VG LD NVS+ +LR+ F+ +G++ SVKIP+GK CGFVQF +R DAE AL
Sbjct: 16 SDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGKQCGFVQFVSRTDAEEAL 75
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
Q L G+ IGKQ VRLSWG +P +KQ R D + N +YG
Sbjct: 76 QGLNGSVIGKQAVRLSWGRSPSHKQSRADSGSRRNNMYYG 115
>gi|125586871|gb|EAZ27535.1| hypothetical protein OsJ_11490 [Oryza sativa Japonica Group]
Length = 171
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
SD NN T+FVG LD +V+D+ L++ FS +GE++ VKIPVGK CGFVQ++NR AE A+
Sbjct: 26 SDSDPNNTTVFVGGLDPSVTDEVLKQAFSPYGELVYVKIPVGKRCGFVQYSNRASAEEAI 85
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
+ L G+ +G Q++RLSWG +PGNKQ + D N WN +YG
Sbjct: 86 RMLNGSQLGGQSIRLSWGRSPGNKQPQQDQ-NQWNAGYYG 124
>gi|326495674|dbj|BAJ85933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 152
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 69/89 (77%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
SDG SNN T++VG LD NVS+ +LR+ F+ +G++ SVKIP+GK CGFVQ+ NR DAE AL
Sbjct: 15 SDGDSNNRTVYVGGLDQNVSEDELRKSFAKYGDVASVKIPLGKQCGFVQYVNRTDAEEAL 74
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
Q L G IGKQ VRLSWG +P +KQ RGD
Sbjct: 75 QGLNGAVIGKQAVRLSWGRSPSHKQSRGD 103
>gi|213401961|ref|XP_002171753.1| RNA-binding post-transcriptional regulator csx1
[Schizosaccharomyces japonicus yFS275]
gi|211999800|gb|EEB05460.1| RNA-binding post-transcriptional regulator csx1
[Schizosaccharomyces japonicus yFS275]
Length = 476
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 97/183 (53%), Gaps = 52/183 (28%)
Query: 7 SDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
++T +L F SR AK+ +DSNT ++GYGFVRF DEN++ RA+ EM G
Sbjct: 200 PEVTEPMLLSLFQSRYRSCKSAKIMMDSNTNLSRGYGFVRFYDENDQKRALTEMQGVYCG 259
Query: 56 --------SDGKS---------------------------------NNATIFVGALDSNV 74
+ KS N T+FVG L V
Sbjct: 260 NRPMRIAMATPKSKNHMYSPMNMMHIGLQPVGFYGAPQPVNQFTDPTNTTVFVGGLSGYV 319
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++++LR LF +FGEI+ VKIP GKGCGFVQF NR+ AE+A+ ++QG +GK +RLSWG
Sbjct: 320 TEEELRFLFQNFGEIIYVKIPPGKGCGFVQFVNRQSAELAINQMQGYPLGKSRIRLSWGR 379
Query: 135 NPG 137
+ G
Sbjct: 380 SQG 382
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 37/159 (23%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------ 56
IT +++Q+ ++ K+ D +G GY FV F +AM +NG+
Sbjct: 109 ITEAMVQQIWNSLGENVNVKIIRDRYSGLNAGYCFVEFNSPASAMKAM-SLNGTVIPGTN 167
Query: 57 -----------------DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIP--- 95
+GK+ +IFVG L V++ L LF S + S KI
Sbjct: 168 RFFKLNWASGGGLHDRREGKTPEFSIFVGDLGPEVTEPMLLSLFQSRYRSCKSAKIMMDS 227
Query: 96 ---VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
+ +G GFV+F + D + AL ++QG G + +R++
Sbjct: 228 NTNLSRGYGFVRFYDENDQKRALTEMQGVYCGNRPMRIA 266
>gi|294463675|gb|ADE77364.1| unknown [Picea sitchensis]
Length = 253
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 66/93 (70%), Gaps = 3/93 (3%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN TIFVG LD VSD+DLR++F FGE++ VKIPV KGCGFVQF NR AE ALQ++ G
Sbjct: 56 NNTTIFVGGLDPTVSDEDLRQIFGQFGELVYVKIPVNKGCGFVQFGNRACAEEALQRVHG 115
Query: 121 TAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAH 153
T IG+QTVRLSWG +P KQ D W A
Sbjct: 116 TVIGQQTVRLSWGRSPATKQ---DQPAGWGQAQ 145
>gi|356538950|ref|XP_003537963.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Glycine max]
Length = 392
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 102/201 (50%), Gaps = 56/201 (27%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D TG +KGYGFV+F DE +R+RAM EMNG
Sbjct: 106 PDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGVYCS 165
Query: 56 -----------------------------------------SDGKSNNATIFVGALDSNV 74
+ NN T+ +G LD NV
Sbjct: 166 TRPMRISAATPKKNASFQHQYAPPKAMYQFPAYSAPVSAVAPENDVNNTTVCIGNLDLNV 225
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++++L++ F FG+I+ VKI GKG G+VQF R AE A+Q++QG IG+Q +++SWG
Sbjct: 226 TEEELKQTFMQFGDIVLVKIYAGKGYGYVQFGTRVSAEDAIQRMQGKVIGQQVIQISWGS 285
Query: 135 NPGNKQWRGDHINHWNGAHYG 155
+ +Q + W+ A+YG
Sbjct: 286 SMTARQMDP---SQWS-AYYG 302
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 23/133 (17%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------I 65
K+ + TG +GYGFV F + NG+ T I
Sbjct: 40 KIIRNKLTGQPEGYGFVEFVSHASAEAFLRTYNGAQMPGTEQTFRLNWASFGDSGPDHSI 99
Query: 66 FVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQKL 118
FVG L +V+D L+E F +H+ + K+ P KG GFV+FA+ A+ ++
Sbjct: 100 FVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRAMTEM 159
Query: 119 QGTAIGKQTVRLS 131
G + +R+S
Sbjct: 160 NGVYCSTRPMRIS 172
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L + F+H GE++S+KI K G GFV+F + AE L+
Sbjct: 11 TLWIGDLQYWVDESYLSQCFAHNGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRT 70
Query: 118 LQGTAIG--KQTVRLSWG 133
G + +QT RL+W
Sbjct: 71 YNGAQMPGTEQTFRLNWA 88
>gi|356541997|ref|XP_003539458.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Glycine max]
Length = 392
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 101/201 (50%), Gaps = 56/201 (27%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ ILQETF +KV D TG +KGYGFV+F DE +R+RAM EMNG
Sbjct: 106 PDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGVYCS 165
Query: 56 -----------------------------------------SDGKSNNATIFVGALDSNV 74
+ NN T+ +G LD NV
Sbjct: 166 TRPMRISAATPKKNASFQHQYAPPKAMYQFPAYTAPVSTVAPENDVNNTTVCIGNLDLNV 225
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++++L++ F FG+I+ VKI GKG G+VQF R AE A+Q++QG IG+Q +++SWG
Sbjct: 226 TEEELKQAFVQFGDIVLVKIYAGKGYGYVQFGTRASAEDAIQRMQGKVIGQQVIQISWGS 285
Query: 135 NPGNKQWRGDHINHWNGAHYG 155
+Q + W+ A+YG
Sbjct: 286 TLTARQMDP---SQWS-AYYG 302
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 29/152 (19%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+ S L + F+ + K+ + TG +GYGFV F + NG+ +
Sbjct: 21 VDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTFNGAQMPGTD 80
Query: 63 AT----------------IFVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKG 99
T IFVG L +V+D L+E F +H+ + K+ P KG
Sbjct: 81 QTFRLNWASFGDSGPDHSIFVGDLAPDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKG 140
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
GFV+FA+ A+ ++ G + +R+S
Sbjct: 141 YGFVKFADEAQRNRAMTEMNGVYCSTRPMRIS 172
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L + F+H GE++S+KI K G GFV+F + AE L+
Sbjct: 11 TLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRT 70
Query: 118 LQGTAIG--KQTVRLSWG 133
G + QT RL+W
Sbjct: 71 FNGAQMPGTDQTFRLNWA 88
>gi|413918499|gb|AFW58431.1| hypothetical protein ZEAMMB73_000058 [Zea mays]
Length = 175
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
SDG S+N T++VG LD NVS+ +LR+ F+ + ++ SVKIP+GK CGFVQF +R DAE AL
Sbjct: 41 SDGDSSNRTVYVGGLDPNVSEDELRKAFAKY-DLASVKIPLGKQCGFVQFVSRTDAEEAL 99
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
Q L G+ IGKQ VRLSW +P +KQ RGD +N N +YG
Sbjct: 100 QGLNGSLIGKQAVRLSWVRSPSHKQSRGDSVNRRNNMYYG 139
>gi|356538948|ref|XP_003537962.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Glycine max]
Length = 401
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 95/186 (51%), Gaps = 52/186 (27%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D TG +KGYGFV+F DE +R+RAM EMNG
Sbjct: 106 PDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGVYCS 165
Query: 56 -----------------------------------------SDGKSNNATIFVGALDSNV 74
+ NN T+ +G LD NV
Sbjct: 166 TRPMRISAATPKKNASFQHQYAPPKAMYQFPAYSAPVSAVAPENDVNNTTVCIGNLDLNV 225
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++++L++ F FG+I+ VKI GKG G+VQF R AE A+Q++QG IG+Q +++SWG
Sbjct: 226 TEEELKQTFMQFGDIVLVKIYAGKGYGYVQFGTRVSAEDAIQRMQGKVIGQQVIQISWGS 285
Query: 135 NPGNKQ 140
+ +Q
Sbjct: 286 SMTARQ 291
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 23/133 (17%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------I 65
K+ + TG +GYGFV F + NG+ T I
Sbjct: 40 KIIRNKLTGQPEGYGFVEFVSHASAEAFLRTYNGAQMPGTEQTFRLNWASFGDSGPDHSI 99
Query: 66 FVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQKL 118
FVG L +V+D L+E F +H+ + K+ P KG GFV+FA+ A+ ++
Sbjct: 100 FVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRAMTEM 159
Query: 119 QGTAIGKQTVRLS 131
G + +R+S
Sbjct: 160 NGVYCSTRPMRIS 172
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L + F+H GE++S+KI K G GFV+F + AE L+
Sbjct: 11 TLWIGDLQYWVDESYLSQCFAHNGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRT 70
Query: 118 LQGTAIG--KQTVRLSWG 133
G + +QT RL+W
Sbjct: 71 YNGAQMPGTEQTFRLNWA 88
>gi|356541995|ref|XP_003539457.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Glycine max]
Length = 401
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 94/186 (50%), Gaps = 52/186 (27%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ ILQETF +KV D TG +KGYGFV+F DE +R+RAM EMNG
Sbjct: 106 PDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGVYCS 165
Query: 56 -----------------------------------------SDGKSNNATIFVGALDSNV 74
+ NN T+ +G LD NV
Sbjct: 166 TRPMRISAATPKKNASFQHQYAPPKAMYQFPAYTAPVSTVAPENDVNNTTVCIGNLDLNV 225
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++++L++ F FG+I+ VKI GKG G+VQF R AE A+Q++QG IG+Q +++SWG
Sbjct: 226 TEEELKQAFVQFGDIVLVKIYAGKGYGYVQFGTRASAEDAIQRMQGKVIGQQVIQISWGS 285
Query: 135 NPGNKQ 140
+Q
Sbjct: 286 TLTARQ 291
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 29/152 (19%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+ S L + F+ + K+ + TG +GYGFV F + NG+ +
Sbjct: 21 VDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTFNGAQMPGTD 80
Query: 63 AT----------------IFVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKG 99
T IFVG L +V+D L+E F +H+ + K+ P KG
Sbjct: 81 QTFRLNWASFGDSGPDHSIFVGDLAPDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKG 140
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
GFV+FA+ A+ ++ G + +R+S
Sbjct: 141 YGFVKFADEAQRNRAMTEMNGVYCSTRPMRIS 172
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L + F+H GE++S+KI K G GFV+F + AE L+
Sbjct: 11 TLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRT 70
Query: 118 LQGTAIG--KQTVRLSWG 133
G + QT RL+W
Sbjct: 71 FNGAQMPGTDQTFRLNWA 88
>gi|297737425|emb|CBI26626.3| unnamed protein product [Vitis vinifera]
Length = 224
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
N + NN TIFVG LDSNV+D LR++FS +GE++ VKIPVGK CGFVQFANR AE
Sbjct: 43 NQGESDPNNTTIFVGGLDSNVTDDYLRQVFSQYGELVHVKIPVGKRCGFVQFANRACAEQ 102
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
AL L GT +G Q++RLSWG +P NKQ + D WN
Sbjct: 103 ALAGLNGTQLGAQSIRLSWGRSPSNKQAQPDQA-QWN 138
>gi|296412343|ref|XP_002835884.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629680|emb|CAZ80041.1| unnamed protein product [Tuber melanosporum]
Length = 412
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 82/154 (53%), Gaps = 30/154 (19%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------- 55
S+ Q F AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 154 SLFQSRFPSCKSAKIMTDPVSGMSRGYGFVRFSDEMDQQRALTEMQGVYCGNRPMRISTA 213
Query: 56 -SDGKS-------------NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
KS NN T+FVG L V++ +LR F FGEI VKIP GKGCG
Sbjct: 214 TPKNKSATGGPPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCG 273
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
FVQF R AE+A+ ++QG IG VRLSWG +
Sbjct: 274 FVQFVQRHAAEMAINQMQGYPIGNSRVRLSWGRS 307
>gi|302841234|ref|XP_002952162.1| hypothetical protein VOLCADRAFT_32547 [Volvox carteri f.
nagariensis]
gi|300262427|gb|EFJ46633.1| hypothetical protein VOLCADRAFT_32547 [Volvox carteri f.
nagariensis]
Length = 193
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 45/160 (28%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
AKV D TG +KGYGFVRFG E ER RA++EMNG
Sbjct: 34 AKVMTDPVTGRSKGYGFVRFGSEAERDRAVVEMNGVFISSRPVRVSVATARRIDGGPLVP 93
Query: 56 --------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
+ NN T+F+G L S V++ LR +F +GEI+ KIP
Sbjct: 94 GGGSRVPGSGPGGGGGGGALGEADPNNTTLFIGGLSSGVTEDQLRGVFGRYGEIIYTKIP 153
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
GKGCGFVQF +R+ AE A+Q++ G IG +VR+SWG +
Sbjct: 154 PGKGCGFVQFIDRQAAEYAMQEVNGQIIGGSSVRISWGKS 193
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 64 TIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQ 116
++FVG L V D L F +F + S K+ PV KG GFV+F + + + A+
Sbjct: 5 SLFVGDLPPEVHDHFLESFFRQYFPSVRSAKVMTDPVTGRSKGYGFVRFGSEAERDRAVV 64
Query: 117 KLQGTAIGKQTVRLS 131
++ G I + VR+S
Sbjct: 65 EMNGVFISSRPVRVS 79
>gi|449471209|ref|XP_004153241.1| PREDICTED: polyadenylate-binding protein RBP45-like, partial
[Cucumis sativus]
Length = 156
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
++ NN TIFVG LD+NV+D+ LR++F +GE++ VKIPVGK CGFVQFA+R AE AL
Sbjct: 10 NENDPNNTTIFVGNLDANVTDEHLRQVFGQYGELVHVKIPVGKRCGFVQFADRNCAEEAL 69
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
+ L GT IG Q +RLSWG +P NKQ + D N WN
Sbjct: 70 RVLNGTQIGGQNIRLSWGRSPSNKQPQADP-NQWN 103
>gi|149392334|gb|ABR25993.1| nucleic acid binding protein [Oryza sativa Indica Group]
Length = 128
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 68/92 (73%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T++VG LD NVS+ +LR+ F+ +G++ SVKIP+GK CGFVQF +R DAE ALQ L G+ I
Sbjct: 1 TVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSVI 60
Query: 124 GKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
GKQ VRLSWG +P +KQ R D + N +YG
Sbjct: 61 GKQAVRLSWGRSPSHKQSRADSGSRRNNMYYG 92
>gi|384244508|gb|EIE18010.1| hypothetical protein COCSUDRAFT_31894 [Coccomyxa subellipsoidea
C-169]
Length = 407
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 91/197 (46%), Gaps = 68/197 (34%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ LQE F + AKV D TG +KGYGFVRFG+E ER R++ EM+G
Sbjct: 111 PDVTDYALQEHFRQFFASVRSAKVITDPLTGRSKGYGFVRFGNEAERDRSLTEMSGHVIN 170
Query: 56 -------------------------------------------------SDGKSNNATIF 66
SD NN T+F
Sbjct: 171 SRPIRVSIATAKKSQTATMLPKQCQNFDFENFRLRVQGAPAPVASQPHPSDYDPNNTTLF 230
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ------- 119
+G L S VS+ DLR LF FG+I+ KIP GKGCGFVQF R AE A+ ++Q
Sbjct: 231 IGGLSSGVSEDDLRVLFGRFGDIVYTKIPPGKGCGFVQFVQRPAAESAMAQMQARCSPSL 290
Query: 120 -GTAIGKQTVRLSWGHN 135
G +G T+R+SWG +
Sbjct: 291 FGQILGGSTIRISWGRS 307
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 27/137 (19%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD-----------------GK---SN 61
K+ + NT ++GYGFV F + + NG GK +
Sbjct: 41 KIIRNKNTAVSEGYGFVEFATHEAAEQVLRTFNGCPIPNTDQIFRLNWAAFGVGKVTTDS 100
Query: 62 NATIFVGALDSNVSDKDLRELFSHF-GEILSVKI---PV---GKGCGFVQFANRKDAEVA 114
+ ++FVG L +V+D L+E F F + S K+ P+ KG GFV+F N + + +
Sbjct: 101 DYSVFVGDLAPDVTDYALQEHFRQFFASVRSAKVITDPLTGRSKGYGFVRFGNEAERDRS 160
Query: 115 LQKLQGTAIGKQTVRLS 131
L ++ G I + +R+S
Sbjct: 161 LTEMSGHVINSRPIRVS 177
>gi|162312303|ref|NP_596601.2| mRNA processing factor (predicted) [Schizosaccharomyces pombe
972h-]
gi|26401571|sp|O60176.2|YG41_SCHPO RecName: Full=Uncharacterized RNA-binding protein C23E6.01c
gi|157310462|emb|CAB83010.2| mRNA processing factor (predicted) [Schizosaccharomyces pombe]
Length = 473
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 82/160 (51%), Gaps = 45/160 (28%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------- 57
AK+ D T ++GYGFVRF DEN++ A+ EM G
Sbjct: 216 AKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPV 275
Query: 58 ----------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
+ N+T+FVG L VS+++L+ LF +FGEI+ VKIP
Sbjct: 276 NVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
GKGCGFVQF NR+ AE+A+ +LQG +G +RLSWG N
Sbjct: 336 PGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 35/157 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAM------------ 50
+T + +Q+ ++ + K+ + TG GY FV F +E S AM
Sbjct: 104 VTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNH 163
Query: 51 -IEMNGSDG---------KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI----- 94
++N + G K++ +IFVG L NV++ D+ LF S + S KI
Sbjct: 164 LFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQ 223
Query: 95 -PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
V +G GFV+F + D + AL ++QG G + +R+
Sbjct: 224 TNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260
>gi|430812963|emb|CCJ29641.1| unnamed protein product [Pneumocystis jirovecii]
Length = 853
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 64/162 (39%), Positives = 80/162 (49%), Gaps = 44/162 (27%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGKS--- 60
AK+ D +G ++GYGFVRF DE ++ RA+ EM G G S
Sbjct: 190 AKIMTDLVSGMSRGYGFVRFSDEVDQRRALTEMQGVYCGSRPIRISTATPKNKPGMSHIN 249
Query: 61 ------------------------NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV 96
NN T+FVG L S V++ +LR F FGEI VKIP
Sbjct: 250 MMHMGMSPLGYYGAPQPMNQFTDPNNTTVFVGGLSSFVTEDELRSFFQGFGEITYVKIPP 309
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
GKGCGFVQF R AE+A+ ++QG IG VRLSWG + N
Sbjct: 310 GKGCGFVQFVQRHAAEMAISQMQGYPIGNSRVRLSWGRSQNN 351
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 36/164 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
K+ D +G GY FV F S+A+ +NG+ D
Sbjct: 97 KMIRDKFSGSNAGYCFVDFSSTAAASKAL-SLNGTIIPGTTRLFKLNWASGGGLTDRKDD 155
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI------PVGKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF S + S KI + +G GFV+F++ D
Sbjct: 156 REPEFSIFVGDLGPEVNEYLLVSLFQSRYPSCKSAKIMTDLVSGMSRGYGFVRFSDEVDQ 215
Query: 112 EVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
AL ++QG G + +R+S P NK ++H N H G
Sbjct: 216 RRALTEMQGVYCGSRPIRISTA-TPKNKP----GMSHINMMHMG 254
>gi|30682335|ref|NP_849641.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332190644|gb|AEE28765.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 306
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 78/143 (54%), Gaps = 41/143 (28%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ IL ETF AKV ID TG TKGYGFVRF DE+E+ RAM EMNG
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCS 223
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
+D NN T+FVG LD++V+D L+ +FS
Sbjct: 224 TRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQ 283
Query: 86 FGEILSVKIPVGKGCGFVQFANR 108
+GEI+ VKIP GK CGFVQF+ +
Sbjct: 284 YGEIVHVKIPAGKRCGFVQFSEK 306
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------G 58
AKV + TG +GYGF+ F R + N +
Sbjct: 91 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD 150
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDA 111
S + TIFVG L ++V+D L E F + + + K+ + KG GFV+F++ +
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 211 IRAMTEMNGVPCSTRPMRI 229
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE++S K+ K G GF++FA+ AE LQ
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 118 LQGTAIGK---QTVRLSWG 133
I Q RL+W
Sbjct: 123 FNNAPIPSFPDQLFRLNWA 141
>gi|409079460|gb|EKM79821.1| hypothetical protein AGABI1DRAFT_57019, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 366
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 47/162 (29%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
AK+ +D TG ++GYGFVRF DE ++ RA+IEM+G
Sbjct: 141 AKIMLDPLTGVSRGYGFVRFSDEADQQRALIEMHGLYCLSRPMRISPATAKFKPASGVSL 200
Query: 56 ----------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVK 93
+ N T+FVG L +S++ LR F+ FG+I VK
Sbjct: 201 DYSQAPPFSAPLPNVDNQPVTLTSNDPYNTTVFVGGLSPLISEETLRTFFAPFGDIHYVK 260
Query: 94 IPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
+PVGK CGFVQF + DAE A++K+QG IG +RLSWG +
Sbjct: 261 VPVGKHCGFVQFVRKADAERAIEKMQGFPIGGSRIRLSWGRS 302
>gi|384484722|gb|EIE76902.1| hypothetical protein RO3G_01606 [Rhizopus delemar RA 99-880]
Length = 204
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 80/145 (55%), Gaps = 35/145 (24%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGK-------------------------- 59
+S+TG ++GYGFVRF D+ E+ +A+ EMNG K
Sbjct: 3 NSSTGLSRGYGFVRFSDQQEQQQAVTEMNGILCKNRPMRVSFATPKTNNQERYIQLALQA 62
Query: 60 ---------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKD 110
NN T+F+G L S V++ +LR+ F FG+I++VK+P GKGCGFVQ+ R
Sbjct: 63 PALVQQPTDPNNTTVFIGGLSSPVTEDELRQYFGSFGDIMNVKLPPGKGCGFVQYTTRIS 122
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHN 135
AE A++K+ G IG +RLSWG +
Sbjct: 123 AETAIEKMNGFLIGTSRIRLSWGRS 147
>gi|413919586|gb|AFW59518.1| hypothetical protein ZEAMMB73_768040 [Zea mays]
Length = 329
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 77/144 (53%), Gaps = 41/144 (28%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ +LQETF AKV D T TKGYGFV+FGD E++RAM EMNG
Sbjct: 185 ADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTEQARAMTEMNGMPCS 244
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
S+ NN TIFVG LD NV++ L++ FS
Sbjct: 245 SRPMRIGPAASRKNAGGVVQERVPNSQGAQSENDPNNTTIFVGGLDPNVTEDVLKQAFSP 304
Query: 86 FGEILSVKIPVGKGCGFVQFANRK 109
+GE++ VKIPVGK CGFVQF R+
Sbjct: 305 YGEVIHVKIPVGKRCGFVQFVTRR 328
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 26/136 (19%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SN 61
K+ D N+G +GYGFV F R + NG S G+ +
Sbjct: 115 VKLIRDKNSGQLQGYGFVEFTSRAAAERVLQTYNGQMMPNVDLTFRLNWASAGEKRDDTP 174
Query: 62 NATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPVG------KGCGFVQFANRKDAEVA 114
+ TIFVG L ++V+D L+E F H+ + K+ KG GFV+F + + A
Sbjct: 175 DYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTEQARA 234
Query: 115 LQKLQGTAIGKQTVRL 130
+ ++ G + +R+
Sbjct: 235 MTEMNGMPCSSRPMRI 250
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + D + FS+ GE+ +VK+ K G GFV+F +R AE LQ
Sbjct: 87 TLWIGDLQYWMDDNYVFGCFSNTGEVQNVKLIRDKNSGQLQGYGFVEFTSRAAAERVLQT 146
Query: 118 LQGTAIG--KQTVRLSWG 133
G + T RL+W
Sbjct: 147 YNGQMMPNVDLTFRLNWA 164
>gi|223973753|gb|ACN31064.1| unknown [Zea mays]
Length = 359
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 27/147 (18%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
AK+ D TG +K YGFV+FGD +E+ +A+ EMNG
Sbjct: 179 AKIIFDKFTGLSKCYGFVQFGDVDEQIQALTEMNGAYCSTRPMRIGPVPKKKNSFRSKQW 238
Query: 56 --SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
S +NN+ +FVG LD +V+ +DL + FS +GE++ VK GKGCGFV ++NR AE
Sbjct: 239 TESYHDANNSRLFVGQLDQSVTSEDLMQAFSPYGELVDVKALPGKGCGFVTYSNRASAEE 298
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
A++ L G+ +G + ++LSWG+ +KQ
Sbjct: 299 AIRMLNGSQLGGKAIKLSWGYPSADKQ 325
>gi|19115155|ref|NP_594243.1| RNA-binding protein Csx1 [Schizosaccharomyces pombe 972h-]
gi|3121946|sp|O13759.1|CSX1_SCHPO RecName: Full=RNA-binding post-transcriptional regulator csx1
gi|2656019|emb|CAB16569.1| RNA-binding protein Csx1 [Schizosaccharomyces pombe]
Length = 632
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 43/160 (26%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
+ AK+ +D TG ++ YGFVRF E E+ A++ M G
Sbjct: 210 TSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAA 269
Query: 56 -----------SDGKSN---------NATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
S+ + N N T+FVG L SN+S+KDL+ F FG IL++KIP
Sbjct: 270 DSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIP 329
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
GKGCGFVQ++ + AE A+ +QG +G +RL+WGHN
Sbjct: 330 FGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
>gi|303290118|ref|XP_003064346.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453944|gb|EEH51251.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 420
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 87/177 (49%), Gaps = 52/177 (29%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-SDG 58
++ + +LQE FS A+V D TG +KG+GFVRF DE++R RA++EMNG + G
Sbjct: 122 PEVNDFMLQEVFSSRYASVRNARVVTDPATGRSKGFGFVRFADESQRDRALVEMNGLACG 181
Query: 59 KSN-------------------------------------------NATIFVGALDSNVS 75
N N T+FVG L S +S
Sbjct: 182 SRNMRISLAIPRKNMTVGYQGGGGGGGDGGGGGGGGGGGARDDGDDNCTVFVGGLGS-IS 240
Query: 76 DKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
D +LR F +GE++ +KIP GKGCGFVQFA R AE A+ L IG VRLSW
Sbjct: 241 DAELRIHFEPYGELVYIKIPHGKGCGFVQFAQRSCAEAAIAGLNNALIGTSRVRLSW 297
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 36/146 (24%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------- 56
K+ + TG+++GYGFV D A+ +NG+
Sbjct: 43 KIIRNKQTGYSEGYGFVEMCDRATAEHALRALNGTQMPNAQQNYRLNWASFGVGARFAGG 102
Query: 57 -DG---KSNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKI---PV---GKGCGFVQF 105
DG SN+ +IFVG L V+D L+E+FS + + + ++ P KG GFV+F
Sbjct: 103 GDGGATNSNDHSIFVGDLPPEVNDFMLQEVFSSRYASVRNARVVTDPATGRSKGFGFVRF 162
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLS 131
A+ + AL ++ G A G + +R+S
Sbjct: 163 ADESQRDRALVEMNGLACGSRNMRIS 188
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFAN 107
NG ++ +T+++G L + + L + F+ G + SVKI K G GFV+ +
Sbjct: 4 NGGAEEAGGSTLWIGDLGYWMDEAYLHQCFASVGGVASVKIIRNKQTGYSEGYGFVEMCD 63
Query: 108 RKDAEVALQKLQGTAI--GKQTVRLSW 132
R AE AL+ L GT + +Q RL+W
Sbjct: 64 RATAEHALRALNGTQMPNAQQNYRLNW 90
>gi|70982362|ref|XP_746709.1| mRNA binding post-transcriptional regulator (Csx1) [Aspergillus
fumigatus Af293]
gi|66844333|gb|EAL84671.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Aspergillus fumigatus Af293]
gi|159123048|gb|EDP48168.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Aspergillus fumigatus A1163]
Length = 418
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 82/181 (45%), Gaps = 57/181 (31%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIE---------------- 52
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ E
Sbjct: 179 SLFQNRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALTEMQGVYCGNRPMRISTA 238
Query: 53 ---------------MNGSDG-----------------------KSNNATIFVGALDSNV 74
M G G NN T+FVG L V
Sbjct: 239 TPKNKGPGVVPGAMGMPGPAGMYPPMGAPPMGFYGAPQPMNQFTDPNNTTVFVGGLSGYV 298
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++QG IG VRLSWG
Sbjct: 299 TEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWGR 358
Query: 135 N 135
+
Sbjct: 359 S 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 32/141 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------D 57
K+ D +G GY FV F ++A + +NG+ D
Sbjct: 97 KMIRDKFSGSNAGYCFVDFSSPAAAAKA-LSLNGTPMPNTNRVFKLNWATGGGLADRSRD 155
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKI---PVG---KGCGFVQFANRKD 110
+ +IFVG L V++ L LF + F S KI P+ +G GFV+F++ D
Sbjct: 156 DRGPEYSIFVGDLGPEVNEYVLVSLFQNRFPSCKSAKIMTDPISGMSRGYGFVRFSDEND 215
Query: 111 AEVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 216 QQRALTEMQGVYCGNRPMRIS 236
>gi|119489215|ref|XP_001262859.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Neosartorya fischeri NRRL 181]
gi|119411017|gb|EAW20962.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Neosartorya fischeri NRRL 181]
Length = 417
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 82/181 (45%), Gaps = 57/181 (31%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIE---------------- 52
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ E
Sbjct: 178 SLFQNRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALTEMQGVYCGNRPMRISTA 237
Query: 53 ---------------MNGSDG-----------------------KSNNATIFVGALDSNV 74
M G G NN T+FVG L V
Sbjct: 238 TPKNKGPGVVPGAMGMPGPAGMYPPMGAPPMGFYGAPQPMNQFTDPNNTTVFVGGLSGYV 297
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++QG IG VRLSWG
Sbjct: 298 TEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWGR 357
Query: 135 N 135
+
Sbjct: 358 S 358
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF + F S KI P+ +G GFV+F++
Sbjct: 154 DDRGPEYSIFVGDLGPEVNEYVLVSLFQNRFPSCKSAKIMTDPISGMSRGYGFVRFSDEN 213
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 214 DQQRALTEMQGVYCGNRPMRIS 235
>gi|134079837|emb|CAK40970.1| unnamed protein product [Aspergillus niger]
Length = 402
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 82/182 (45%), Gaps = 58/182 (31%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIE---------------- 52
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ E
Sbjct: 178 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTA 237
Query: 53 ----------------MNGSDGK-----------------------SNNATIFVGALDSN 73
M G G NN T+FVG L
Sbjct: 238 TPKNKGPSLGAAGAMGMPGPAGMYPPMGAPPMGFYGAPQPMNQFTDPNNTTVFVGGLSGY 297
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++QG IG VRLSWG
Sbjct: 298 VTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWG 357
Query: 134 HN 135
+
Sbjct: 358 RS 359
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 154 DDRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEN 213
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 214 DQQRALSEMQGVYCGNRPMRIS 235
>gi|358374531|dbj|GAA91122.1| mRNA binding post-transcriptional regulator [Aspergillus kawachii
IFO 4308]
Length = 402
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 82/182 (45%), Gaps = 58/182 (31%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIE---------------- 52
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ E
Sbjct: 178 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTA 237
Query: 53 ----------------MNGSDGK-----------------------SNNATIFVGALDSN 73
M G G NN T+FVG L
Sbjct: 238 TPKNKGPSLGAAGAMGMPGPAGMYPPMGAPPMGFYGAPQPMNQFTDPNNTTVFVGGLSGY 297
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++QG IG VRLSWG
Sbjct: 298 VTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWG 357
Query: 134 HN 135
+
Sbjct: 358 RS 359
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 154 DDRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEN 213
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 214 DQQRALSEMQGVYCGNRPMRIS 235
>gi|350637619|gb|EHA25976.1| hypothetical protein ASPNIDRAFT_212792 [Aspergillus niger ATCC
1015]
Length = 403
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 82/182 (45%), Gaps = 58/182 (31%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIE---------------- 52
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ E
Sbjct: 179 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTA 238
Query: 53 ----------------MNGSDGK-----------------------SNNATIFVGALDSN 73
M G G NN T+FVG L
Sbjct: 239 TPKNKGPSLGAAGAMGMPGPAGMYPPMGAPPMGFYGAPQPMNQFTDPNNTTVFVGGLSGY 298
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++QG IG VRLSWG
Sbjct: 299 VTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWG 358
Query: 134 HN 135
+
Sbjct: 359 RS 360
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 155 DDRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEN 214
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 215 DQQRALSEMQGVYCGNRPMRIS 236
>gi|317033242|ref|XP_001395129.2| mRNA binding post-transcriptional regulator (Csx1) [Aspergillus
niger CBS 513.88]
gi|317033244|ref|XP_003188853.1| mRNA binding post-transcriptional regulator (Csx1) [Aspergillus
niger CBS 513.88]
Length = 399
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 82/182 (45%), Gaps = 58/182 (31%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIE---------------- 52
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ E
Sbjct: 179 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTA 238
Query: 53 ----------------MNGSDG-----------------------KSNNATIFVGALDSN 73
M G G NN T+FVG L
Sbjct: 239 TPKNKGPSLGAAGAMGMPGPAGMYPPMGAPPMGFYGAPQPMNQFTDPNNTTVFVGGLSGY 298
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++QG IG VRLSWG
Sbjct: 299 VTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWG 358
Query: 134 HN 135
+
Sbjct: 359 RS 360
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 155 DDRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEN 214
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 215 DQQRALSEMQGVYCGNRPMRIS 236
>gi|302792090|ref|XP_002977811.1| hypothetical protein SELMODRAFT_232989 [Selaginella moellendorffii]
gi|300154514|gb|EFJ21149.1| hypothetical protein SELMODRAFT_232989 [Selaginella moellendorffii]
Length = 455
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
D N TIFVG LD N++++++++ FS GE++SVKIP GKGC FVQ+A R AE AL
Sbjct: 259 PDSDPTNTTIFVGGLDLNITEEEVKQTFSQIGELVSVKIPPGKGCAFVQYAQRNSAEDAL 318
Query: 116 QKLQGTAIGKQTVRLSWGHNP 136
Q+L GT IG+Q +RLSWG +P
Sbjct: 319 QRLHGTVIGQQAIRLSWGRSP 339
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%), Gaps = 7/56 (12%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T+ +L ETF AKV ID+ TG +KGYGFVRF DENER+RAM EMNG
Sbjct: 130 PDVTDYMLHETFRTRFPSVRGAKVVIDAVTGRSKGYGFVRFADENERARAMSEMNG 185
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 29/140 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN------------------- 61
AKV + TG+ +GYGF+ F R ++ NG+
Sbjct: 57 AKVIRNKQTGYPEGYGFIEFNSHPAAERVLLAYNGTQMPQTEQAFRLNWASFGMGEKRMD 116
Query: 62 ---NATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+IFVG L +V+D L E F + F + K+ + KG GFV+FA+ +
Sbjct: 117 GGPELSIFVGDLAPDVTDYMLHETFRTRFPSVRGAKVVIDAVTGRSKGYGFVRFADENER 176
Query: 112 EVALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 177 ARAMSEMNGVYCSSRPMRIS 196
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + LR LF+H GE+LS K+ K G GF++F + AE L
Sbjct: 29 TLWIGDLQYWMDENYLRNLFAHTGEVLSAKVIRNKQTGYPEGYGFIEFNSHPAAERVLLA 88
Query: 118 LQGTAIGK--QTVRLSWG 133
GT + + Q RL+W
Sbjct: 89 YNGTQMPQTEQAFRLNWA 106
>gi|171695760|ref|XP_001912804.1| hypothetical protein [Podospora anserina S mat+]
gi|170948122|emb|CAP60286.1| unnamed protein product [Podospora anserina S mat+]
Length = 390
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 83/181 (45%), Gaps = 57/181 (31%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRA------------------- 49
S+ Q F AK+ D+ TG ++GYGFVRF DE+++ RA
Sbjct: 152 SLFQSRFPSCKSAKIMTDAMTGQSRGYGFVRFSDESDQQRALVEMQGVYCGNRPMRISTA 211
Query: 50 -------MIEMNGSDGK----------------------------SNNATIFVGALDSNV 74
M + G+ NN T+FVG L V
Sbjct: 212 TPKTRYMMPPVPGAQAPMWGGVPPYGYAQPAAPFNPMQPMNQFTDPNNTTVFVGGLSGYV 271
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++QG IG VRLSWG
Sbjct: 272 TEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQGYPIGNSRVRLSWGR 331
Query: 135 N 135
+
Sbjct: 332 S 332
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 32/142 (22%)
Query: 20 RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS----------------------- 56
+ KV D N+G+ GY FV F E ++ + +NG+
Sbjct: 70 QVKVIRDRNSGNA-GYCFVEFSTP-EAAQKALALNGTPVPNSQRVFKLNWASGGGLVDRR 127
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI +G GFV+F++
Sbjct: 128 DDRGPEYSIFVGDLGPEVNEFVLVSLFQSRFPSCKSAKIMTDAMTGQSRGYGFVRFSDES 187
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 188 DQQRALVEMQGVYCGNRPMRIS 209
>gi|159480296|ref|XP_001698220.1| hypothetical protein CHLREDRAFT_193148 [Chlamydomonas reinhardtii]
gi|158273718|gb|EDO99505.1| predicted protein [Chlamydomonas reinhardtii]
Length = 1212
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 58/139 (41%), Positives = 75/139 (53%), Gaps = 35/139 (25%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
AKV +D+ TG +KG+GFVRF E ER RA+ EMNG
Sbjct: 42 AKVMMDNITGRSKGFGFVRFAVEGERDRALNEMNGVFISSRQHTLSASAVSALAPCASNT 101
Query: 56 ----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQF 105
+ N T+FVG L ++VS+ LR +F +GEI VKIP GKGCGFV F
Sbjct: 102 HCRNTPTQLPGELDPQNTTLFVGGLSAHVSEDALRGVFGRYGEISYVKIPPGKGCGFVHF 161
Query: 106 ANRKDAEVALQKLQGTAIG 124
A+R+ AE A+Q++ GT IG
Sbjct: 162 ADRQAAEYAMQEVNGTIIG 180
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKD 110
G N ++FVG L V D L F +F + S K+ + KG GFV+FA +
Sbjct: 7 GDPNCFSLFVGDLPPEVHDHFLESFFRQYFPSVRSAKVMMDNITGRSKGFGFVRFAVEGE 66
Query: 111 AEVALQKLQGTAIGKQTVRLS 131
+ AL ++ G I + LS
Sbjct: 67 RDRALNEMNGVFISSRQHTLS 87
>gi|320584167|gb|EFW98378.1| RNA-binding post-transcriptional regulator csx1 [Ogataea
parapolymorpha DL-1]
Length = 485
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 64/177 (36%), Positives = 84/177 (47%), Gaps = 54/177 (30%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S AKV ID TGH KGYGFV+F +E ++ RA+IEM G
Sbjct: 182 SGAKVMIDPATGHLKGYGFVKFLNETDQKRALIEMQGYVLLGRPIRVSTASKSQTNAAAN 241
Query: 56 ---------SDG---------------------KSNNATIFVGALDSNVSDKDLRELFSH 85
DG NN T+F+G L+ +S+ LR LFS
Sbjct: 242 SSFASAMPSQDGLGQLKVNVPSLPQTAPLQYYNDPNNTTVFIGGLNVPISEMQLRALFSR 301
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQT-VRLSWGHNPGNKQW 141
+G+I VKIP GK CGFVQF +R AE+A+ ++QG IG +R+SWG + W
Sbjct: 302 YGDISYVKIPPGKNCGFVQFFHRASAEMAISEMQGYDIGGGCRIRVSWGARAAQRNW 358
Score = 35.4 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 64 TIFVGALDSNVSDKDLRELF-----SHFGEILSVKIPVG--KGCGFVQFANRKDAEVALQ 116
+IFVG L V+++ L + F S G + + G KG GFV+F N D + AL
Sbjct: 155 SIFVGDLPQTVTEQSLLQAFQARYPSCSGAKVMIDPATGHLKGYGFVKFLNETDQKRALI 214
Query: 117 KLQGTAIGKQTVRLS 131
++QG + + +R+S
Sbjct: 215 EMQGYVLLGRPIRVS 229
>gi|254577373|ref|XP_002494673.1| ZYRO0A07018p [Zygosaccharomyces rouxii]
gi|238937562|emb|CAR25740.1| ZYRO0A07018p [Zygosaccharomyces rouxii]
Length = 558
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 87/199 (43%), Gaps = 73/199 (36%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEM------- 53
++T S L E F S K+ D TG +KGY FV+F + + RA++EM
Sbjct: 155 NVTESQLFELFISRFNSTSHVKIVYDQLTGVSKGYAFVKFTNPAHQQRALLEMQGIFLSG 214
Query: 54 ------------NGSDGKS----------------------------------------- 60
N +DGKS
Sbjct: 215 RAIRVSNAGHLQNSADGKSKATGAASASNANAVGGINTGNNSGLMSGSQFMYPVQPQPAL 274
Query: 61 ------NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVA 114
NN T+FVG L S V++ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A
Sbjct: 275 NSFTDPNNTTVFVGGLSSLVAEDELRAYFQPFGTIVYVKIPVGKGCGFVQYVDRISAETA 334
Query: 115 LQKLQGTAIGKQTVRLSWG 133
+ K+QG IG VRLSWG
Sbjct: 335 IAKMQGFPIGNSRVRLSWG 353
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFANRKDAEV 113
N ++FVG L NV++ L ELF S F VKI V KG FV+F N +
Sbjct: 143 NEYSVFVGDLAPNVTESQLFELFISRFNSTSHVKIVYDQLTGVSKGYAFVKFTNPAHQQR 202
Query: 114 ALQKLQGTAIGKQTVRLS 131
AL ++QG + + +R+S
Sbjct: 203 ALLEMQGIFLSGRAIRVS 220
>gi|298706390|emb|CBJ29399.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 434
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 32/160 (20%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--- 57
++T++ L+ TF AKV + TG +K +GF+RFGDE ER A+ MNG++
Sbjct: 117 EVTDAELKATFLGKYTSVLGAKVVTNPMTGSSKSFGFIRFGDEQERDEALTAMNGAECCG 176
Query: 58 ----------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
+N T+FVG ++ +V++K LR+ F+ GEI +V P
Sbjct: 177 RPIRVAPATKRTSVQGQTGAHATDPSNTTVFVGGINDSVTEKVLRDTFNSAGEIQTVTTP 236
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
G+GC FV FA+R AE + +QGT + VRLSWG +
Sbjct: 237 PGRGCAFVTFAHRASAEHVINNMQGTTVCGSCVRLSWGKS 276
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 34/174 (19%)
Query: 6 VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN----------- 54
V + +SI+ + K+ D + G GYGF+ F + + +N
Sbjct: 32 VESLFSSIVGQEL-EVKLIRDRHRGIVAGYGFIDFRNHETAQLVLDSLNGKPIEGTSLRY 90
Query: 55 ----GSDGK----SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKG 99
G+ GK + ++FVG L V+D +L+ F + +L K+ P+ K
Sbjct: 91 RLNWGAGGKRIEQAPEYSVFVGDLSPEVTDAELKATFLGKYTSVLGAKVVTNPMTGSSKS 150
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAH 153
GF++F + ++ + AL + G + +R++ P K+ + GAH
Sbjct: 151 FGFIRFGDEQERDEALTAMNGAECCGRPIRVA----PATKR---TSVQGQTGAH 197
>gi|326532404|dbj|BAK05131.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 356
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 92/180 (51%), Gaps = 39/180 (21%)
Query: 8 DITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
D+T+ +L F +AKV + +KGYGFV FGD NE ++AM EMNG+
Sbjct: 143 DVTDFMLHHVFKNRYPSVKKAKVIWNVFARRSKGYGFVVFGDVNECTQAMTEMNGAYCSS 202
Query: 57 ---------------------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
D NN+ +FVG LDS V+D+DL + FS +GE L+VKI
Sbjct: 203 RPMRIGPATFKSDFRTQGTYPDSNRNNSRLFVGQLDSCVTDEDLIKAFSPYGE-LTVKII 261
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHYG 155
GK CGFV +++R AE AL L G+ +G + + W + KQ + WNG +G
Sbjct: 262 EGKSCGFVTYSSRASAEEALTILNGSQLGDNIITVVWARHAPKKQ------DQWNGVDHG 315
>gi|125549809|gb|EAY95631.1| hypothetical protein OsI_17488 [Oryza sativa Indica Group]
Length = 263
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
TIFVG LD NV++ L+++F+ +GE++ VKIPVGK CGFVQ+ NR AE AL LQGT I
Sbjct: 123 TIFVGGLDPNVTEDVLKQVFAPYGEVVHVKIPVGKRCGFVQYVNRPSAEQALAVLQGTLI 182
Query: 124 GKQTVRLSWGHNPGNKQWRGDHINHW 149
G Q VRLSWG + NKQ + D N W
Sbjct: 183 GGQNVRLSWGRSLSNKQPQHDS-NQW 207
>gi|242045812|ref|XP_002460777.1| hypothetical protein SORBIDRAFT_02g034736 [Sorghum bicolor]
gi|241924154|gb|EER97298.1| hypothetical protein SORBIDRAFT_02g034736 [Sorghum bicolor]
Length = 171
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 66/99 (66%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
S+ NN T+FVG LDSNV+++ LR++F+ GEI VKIPVGK CGFVQF +R AE A+
Sbjct: 10 SENDPNNTTVFVGGLDSNVNEEYLRQIFTPHGEISYVKIPVGKHCGFVQFTSRSCAEEAI 69
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHY 154
Q L G+ IG Q VRLSWG + + D + +NG Y
Sbjct: 70 QMLNGSQIGGQKVRLSWGRTQNRQASQQDANSQYNGNSY 108
>gi|325183868|emb|CCA18326.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325183943|emb|CCA18401.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 429
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 43/173 (24%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
++++ +L TFS AKV ID T KG+GFVRFGD+ E +A+ MNG
Sbjct: 104 APEVSDELLLSTFSTRFSSVRGAKVVIDPVTRMPKGFGFVRFGDKGEADQALQTMNGVYC 163
Query: 56 ---------------------------------SDGKSNNATIFVGALDSNVSDKDLREL 82
++ + N T+F+G LD + ++ DLR
Sbjct: 164 SSRPMRVSVATDRTKTRGIMPPPISYTVVGTGNTEEEGANTTVFIGGLDPSTTEDDLRAR 223
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
F GEI+SVK+P G+GCGFVQ+ + A+VA+ ++ G I VR +WG +
Sbjct: 224 FGVIGEIMSVKVPPGRGCGFVQYVTKDAADVAINQMNGALINGVKVRCAWGRS 276
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 26/136 (19%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKS----NN 62
K+ D TG+ GYGF+ F + + NG + G+ +
Sbjct: 36 KLIRDKVTGYPAGYGFLEFPSQQGAQAVLNTFNGQIVPNTIHRFRLNWGAGGRRIDTVED 95
Query: 63 ATIFVGALDSNVSDKDLRELFS-HFGEILSVKI---PV---GKGCGFVQFANRKDAEVAL 115
+IFVG L VSD+ L FS F + K+ PV KG GFV+F ++ +A+ AL
Sbjct: 96 HSIFVGDLAPEVSDELLLSTFSTRFSSVRGAKVVIDPVTRMPKGFGFVRFGDKGEADQAL 155
Query: 116 QKLQGTAIGKQTVRLS 131
Q + G + +R+S
Sbjct: 156 QTMNGVYCSSRPMRVS 171
>gi|320580282|gb|EFW94505.1| RNA binding protein [Ogataea parapolymorpha DL-1]
Length = 398
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 55/179 (30%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGK------- 59
++ Q FS K V D TG ++ +GFVRF + +R +A++EMNG DG+
Sbjct: 144 ALFQTHFSTVKTVRVMTDPATGLSRCFGFVRFSSDEDRQKALVEMNGKWLDGRLIRVALA 203
Query: 60 -------------------------------------------SNNATIFVGALDSNVSD 76
N T+FVG L +N+++
Sbjct: 204 TPKHQNQQFRKHQIPMELDPYHAPGLPPIGYYAAPQPPPAYSDPTNTTVFVGGLSNNITE 263
Query: 77 KDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
L +F +G+I+ VK+P GKGCGFV+F R DAE A+++LQG I VRLSWG +
Sbjct: 264 ATLLSIFEPYGQIVHVKVPPGKGCGFVKFTQRTDAERAIEQLQGYVIDGSRVRLSWGRS 322
>gi|348670884|gb|EGZ10705.1| hypothetical protein PHYSODRAFT_520170 [Phytophthora sojae]
Length = 390
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 34/151 (22%)
Query: 7 SDITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +L TF SR AKV +D T +KG+GFVRFG + E +A+ MNG
Sbjct: 105 PDVTDELLLSTFNSRFTSVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVYCS 164
Query: 56 -----------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
+ + N T+FVG LD + ++ +LR F GEI+SV
Sbjct: 165 SRPMRVSVATERSKSRQQGAFGAPEEEGTNTTVFVGGLDPSTTEDELRARFGALGEIVSV 224
Query: 93 KIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
K+P G+GCGFVQ+ +++ AEVA+ ++ GT I
Sbjct: 225 KVPPGRGCGFVQYTSKEAAEVAITQMNGTVI 255
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 26/136 (19%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAM--------------IEMN-GSDGK----SNN 62
K+ D TG+ GYGF+ F + + + MN G+ G+ S++
Sbjct: 36 KLIRDKVTGYPAGYGFLEFPTQRGAQQVLDTYNGQVIPNTMHRFRMNWGAGGRRIETSDD 95
Query: 63 ATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKGCGFVQFANRKDAEVAL 115
+IFVG L +V+D+ L F S F + K+ PV KG GFV+F ++++A+ AL
Sbjct: 96 HSIFVGDLAPDVTDELLLSTFNSRFTSVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQAL 155
Query: 116 QKLQGTAIGKQTVRLS 131
Q + G + +R+S
Sbjct: 156 QTMNGVYCSSRPMRVS 171
>gi|323450795|gb|EGB06674.1| hypothetical protein AURANDRAFT_28594, partial [Aureococcus
anophagefferens]
Length = 319
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 75/153 (49%), Gaps = 41/153 (26%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------------------DGKSN 61
K+ ID +TG +KG+GF++FG E ER AM EM+G + K N
Sbjct: 167 KLVIDMSTGLSKGFGFIKFGSEAERDSAMNEMHGQYVGERAIRCTLATTREEREREAKMN 226
Query: 62 ---------------------NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
N +FVG LD +VS LR F G+I ++IP G+GC
Sbjct: 227 QQQQMYDPSRLHAPKATEEGENTCVFVGGLDESVSPDMLRHHFGLLGDIAYIRIPPGRGC 286
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV F +RK+AE A+ LQG I VRLSWG
Sbjct: 287 GFVGFVHRKNAEAAISTLQGLRINGYKVRLSWG 319
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 64 TIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKDAEVALQ 116
+IFVG LD V+++ L F+ + ILS K+ + KG GF++F + + + A+
Sbjct: 137 SIFVGDLDYTVTEQQLHGAFAKKYRSILSTKLVIDMSTGLSKGFGFIKFGSEAERDSAMN 196
Query: 117 KLQGTAIGKQTVRLS 131
++ G +G++ +R +
Sbjct: 197 EMHGQYVGERAIRCT 211
>gi|290997888|ref|XP_002681513.1| predicted protein [Naegleria gruberi]
gi|284095137|gb|EFC48769.1| predicted protein [Naegleria gruberi]
Length = 292
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 41/175 (23%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+ + +L++TF AKV +D +G +KGYGFV+F DE++ R+M EM G
Sbjct: 118 PDVNDYMLEQTFRNRYPSVRGAKVVMDPKSGISKGYGFVKFADEDDMMRSMTEMQGVYIS 177
Query: 56 --------------SDG----------------KSNNATIFVGALDSNVSDKDLRELFSH 85
S G + N T++VG L N +K LRE F
Sbjct: 178 SRPVKISHATNNFKSQGALEDLMPTTIITTDPLEQENTTVYVGNLSPNTDEKILREFFQG 237
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+G I SVKIP CGF+ F + AE A+ ++ G I VR+SWG NK+
Sbjct: 238 YGPITSVKIPTNSNCGFINFTRTEHAERAIIEMNGIEIQGNRVRVSWGRVQHNKK 292
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 44/165 (26%)
Query: 14 LQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIE--------------------- 52
++ + + K+ D NTG + GYGFV F E ++A++E
Sbjct: 25 IRPSINSVKIIKDRNTGKSIGYGFVEFASI-EIAKAVLESYAGKPIPTLPNKIYRLNWAA 83
Query: 53 ---------------MNGSDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI-- 94
S GK N +IFVG L +V+D L + F + + + K+
Sbjct: 84 QNQGSNPLFSSQPGGKPSSGGKENIVSIFVGDLAPDVNDYMLEQTFRNRYPSVRGAKVVM 143
Query: 95 -P---VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
P + KG GFV+FA+ D ++ ++QG I + V++S N
Sbjct: 144 DPKSGISKGYGFVKFADEDDMMRSMTEMQGVYISSRPVKISHATN 188
>gi|308801969|ref|XP_003078298.1| DNA-binding protein (ISS) [Ostreococcus tauri]
gi|116056749|emb|CAL53038.1| DNA-binding protein (ISS) [Ostreococcus tauri]
Length = 452
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 79/172 (45%), Gaps = 39/172 (22%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--- 56
SD+ +IL E F A+V +D T KGYGFV F E + A+ GS
Sbjct: 205 SDVNETILCEHFKSKCSTAHNARVVVDLKTFRPKGYGFVDFKTEKDYMTALSAFQGSRCG 264
Query: 57 -----------------------------DGKSNNATIFVGALDSNVSDKDLRELFSHFG 87
D N TIF+G LD NV+++ LR +F FG
Sbjct: 265 SSDRQMRVCNAFERKPEPVIDVTKFHDFEDMDPQNTTIFIGNLDHNVTEEHLRVVFEEFG 324
Query: 88 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
EI K KGCGFV F +R+DA A++ L G+ IG + VRLSWG + K
Sbjct: 325 EIAYAKATPKKGCGFVHFFDRQDATEAIENLHGSMIGSKRVRLSWGRHNATK 376
>gi|301107790|ref|XP_002902977.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098095|gb|EEY56147.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 382
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 34/152 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+T+ +L TF+ AKV +D T +KG+GFVRFG + E +A+ MNG
Sbjct: 104 APDVTDELLLATFNARFTTVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVYC 163
Query: 56 ------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
+ + N T+FVG LD ++ +LR F G I+S
Sbjct: 164 SSRPMRVSVATERNKSRQQVGFTMGEEEGTNTTVFVGGLDPATTEDELRARFGALGAIVS 223
Query: 92 VKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
VK+P G+GCGFVQ+++++ AEVA+ ++ G A+
Sbjct: 224 VKVPPGRGCGFVQYSSKEAAEVAISQMNGQAV 255
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 26/136 (19%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D TG+ GYGF+ F + + + +NG + G+ S++
Sbjct: 36 KLIRDKVTGYPAGYGFLEFPTQQGAQQVLETLNGQLIPNTMHRFRMNWGAGGRRIETSDD 95
Query: 63 ATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKGCGFVQFANRKDAEVAL 115
+IFVG L +V+D+ L F + F + K+ PV KG GFV+F ++++A+ AL
Sbjct: 96 HSIFVGDLAPDVTDELLLATFNARFTTVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQAL 155
Query: 116 QKLQGTAIGKQTVRLS 131
Q + G + +R+S
Sbjct: 156 QTMNGVYCSSRPMRVS 171
>gi|406866319|gb|EKD19359.1| RNA-binding protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 812
Score = 95.9 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 52/78 (66%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++QG
Sbjct: 537 NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQG 596
Query: 121 TAIGKQTVRLSWGHNPGN 138
IG VRLSWG + N
Sbjct: 597 YPIGNSRVRLSWGRSQNN 614
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETF---SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 417 SLFQARFPSCKSAKIMTDPISGMSRGYGFVRFADEGDQQRALTEMQG 463
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 33/148 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
K+ D +G+ GY F+ F ++A+ +NGS D
Sbjct: 337 KMIRDKFSGNA-GYCFIDFSSPAAAAKAL-SLNGSMIPNTARPFKLNWASGGGLADRRDD 394
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI P+ +G GFV+FA+ D
Sbjct: 395 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDPISGMSRGYGFVRFADEGDQ 454
Query: 112 EVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+ AL ++QG G + +R+S P NK
Sbjct: 455 QRALTEMQGVYCGNRPMRISTA-TPKNK 481
>gi|222624283|gb|EEE58415.1| hypothetical protein OsJ_09609 [Oryza sativa Japonica Group]
Length = 261
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 83/167 (49%), Gaps = 27/167 (16%)
Query: 4 CQVSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
C + + +LQETF AKV D NTG +KGYGFV+F DENE++RAM EMNG
Sbjct: 35 CFAPNRRDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGM 94
Query: 57 -------------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG---KGC 100
K+ + + GA N + + + HF ++ V K
Sbjct: 95 YCSTRPMRISAAIPKKTTGSQLQYGAAKDNAAYITIHKCIIHFHRQPCIQQQVMQFRKSN 154
Query: 101 GFVQFANRK----DAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
F Q R+ AE A+Q+L GT IG+Q VRLSWG +P +KQ G
Sbjct: 155 QFYQIVIRQTPLASAEEAVQRLHGTTIGQQVVRLSWGRSPASKQVEG 201
>gi|210075649|ref|XP_502423.2| YALI0D04917p [Yarrowia lipolytica]
gi|199425763|emb|CAG80611.2| YALI0D04917p [Yarrowia lipolytica CLIB122]
Length = 430
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 55/74 (74%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
+NN T+FVG L S+VS+ +LR+ F FG+I VKIP GKGCGFVQ+ R+ AE+A+ ++Q
Sbjct: 231 ANNTTVFVGGLSSSVSEDELRQYFQGFGDITYVKIPPGKGCGFVQYVQRQSAEMAITQMQ 290
Query: 120 GTAIGKQTVRLSWG 133
G IG VRLSWG
Sbjct: 291 GYPIGNGRVRLSWG 304
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 24/120 (20%)
Query: 35 YGFVRFGDENERSRAMIEMNGS----------------DGKSNNATIFVGALDSNVSDKD 78
YGF+ F E + A ++ NG DG +IFVG L ++ +
Sbjct: 47 YGFIDFASP-ELAAAALKFNGKPIPGTDRLFKLGEDNGDGAPVEFSIFVGDLAPESTEPE 105
Query: 79 LRELF-SHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
L + F S + + KI PV +G GFV+F++ +D + ALQ++QG +G + +R+S
Sbjct: 106 LLQAFKSRYESCRAAKIMTDPVTGLSRGYGFVRFSSEEDQQKALQEMQGYMLGSRPLRVS 165
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
E+ AK+ D TG ++GYGFVRF E ++ +A+ EM G
Sbjct: 115 ESCRAAKIMTDPVTGLSRGYGFVRFSSEEDQQKALQEMQG 154
>gi|71005504|ref|XP_757418.1| hypothetical protein UM01271.1 [Ustilago maydis 521]
gi|46096901|gb|EAK82134.1| hypothetical protein UM01271.1 [Ustilago maydis 521]
Length = 1059
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 45/86 (52%), Positives = 57/86 (66%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
N S NN T+FVG L S +S+ LR F HFGEI VKIP GKGCGFVQ+ ++DAE
Sbjct: 612 NDSAADPNNTTVFVGGLSSLISEVTLRRYFEHFGEISYVKIPPGKGCGFVQYVRKQDAET 671
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNK 139
A+Q++ G I +RLSWG + G+K
Sbjct: 672 AIQRMNGFPILNSKIRLSWGRSQGDK 697
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D TG +KGYGFVRF E + +RA++EM G
Sbjct: 404 AKIMTDPVTGVSKGYGFVRFSLEADCNRALVEMQG 438
>gi|443897314|dbj|GAC74655.1| FOG: RRM domain [Pseudozyma antarctica T-34]
Length = 979
Score = 95.5 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 56/84 (66%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
S NN T+FVG L S +S+ LR F HFGEI VKIP GKGCGFVQ+ ++DAE A+
Sbjct: 577 SAADPNNTTVFVGGLSSLISESTLRRYFEHFGEITYVKIPPGKGCGFVQYVRKQDAENAI 636
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNK 139
Q++ G I +RLSWG + G+K
Sbjct: 637 QRMNGFPILNSKIRLSWGRSQGDK 660
Score = 42.0 bits (97), Expect = 0.082, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D TG +KGYGFVRF E + +RA++EM G
Sbjct: 369 AKIMTDPVTGVSKGYGFVRFALEADCNRALVEMQG 403
>gi|444322688|ref|XP_004181985.1| hypothetical protein TBLA_0H01790 [Tetrapisispora blattae CBS 6284]
gi|387515031|emb|CCH62466.1| hypothetical protein TBLA_0H01790 [Tetrapisispora blattae CBS 6284]
Length = 674
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 52/73 (71%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S VS+ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A+ K+QG
Sbjct: 338 NNTTVFIGGLSSLVSEGELRSYFQPFGTIVYVKIPVGKGCGFVQYVDRSAAETAISKMQG 397
Query: 121 TAIGKQTVRLSWG 133
IG +RLSWG
Sbjct: 398 FPIGNSRIRLSWG 410
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 64 TIFVGALDSNVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQ 116
++FVG L NV++ L +LF + + + KI V KG GFV+F N D + +L
Sbjct: 174 SVFVGDLAPNVTEAQLFDLFINRYSSTIHAKIVYDQMTNVSKGYGFVRFNNSADQQRSLN 233
Query: 117 KLQGTAIGKQTVRLS 131
++QG + +++R+S
Sbjct: 234 EMQGVFLNGRSIRVS 248
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D T +KGYGFVRF + ++ R++ EM G
Sbjct: 203 AKIVYDQMTNVSKGYGFVRFNNSADQQRSLNEMQG 237
>gi|343427154|emb|CBQ70682.1| related to NAM8-meiotic recombination protein [Sporisorium
reilianum SRZ2]
Length = 968
Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 56/84 (66%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
S NN T+FVG L S +S+ LR F HFGEI VKIP GKGCGFVQ+ ++DAE A+
Sbjct: 572 SAADPNNTTVFVGGLSSLISEATLRRYFEHFGEITYVKIPPGKGCGFVQYVRKQDAENAI 631
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNK 139
Q++ G I +RLSWG + G+K
Sbjct: 632 QRMNGFPILNSKIRLSWGRSQGDK 655
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D TG +KGYGFVRF E + +RA++EM G
Sbjct: 368 AKIMTDPVTGVSKGYGFVRFALEADCNRALVEMQG 402
>gi|255714705|ref|XP_002553634.1| KLTH0E03520p [Lachancea thermotolerans]
gi|238935016|emb|CAR23197.1| KLTH0E03520p [Lachancea thermotolerans CBS 6340]
Length = 516
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 52/73 (71%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S VS+ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A+ K+QG
Sbjct: 271 NNTTVFIGGLSSLVSEDELRAYFQPFGSIVYVKIPVGKGCGFVQYVDRISAETAIAKMQG 330
Query: 121 TAIGKQTVRLSWG 133
IG +RLSWG
Sbjct: 331 YPIGNSRIRLSWG 343
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D TG +KGYGFV+FG E+E+ RA++EM G
Sbjct: 163 AKIVFDQMTGVSKGYGFVKFGQESEQQRALLEMQG 197
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFANRKDAEV 113
N ++FVG + NVS+ L ELF S + L+ KI V KG GFV+F + +
Sbjct: 131 NEHSVFVGDIAPNVSEAQLFELFISRYASTLNAKIVFDQMTGVSKGYGFVKFGQESEQQR 190
Query: 114 ALQKLQGTAIGKQTVRLS 131
AL ++QG + + VR+S
Sbjct: 191 ALLEMQGVFLNGRAVRVS 208
>gi|302307679|ref|NP_984403.2| ADR307Wp [Ashbya gossypii ATCC 10895]
gi|299789115|gb|AAS52227.2| ADR307Wp [Ashbya gossypii ATCC 10895]
Length = 566
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 54/75 (72%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG+I+ VKIPVGKGCGFVQ+ +R AE A+ K+QG
Sbjct: 280 NNTTVFIGGLSSLVTEDELRAYFQPFGQIVYVKIPVGKGCGFVQYVDRSSAENAIAKMQG 339
Query: 121 TAIGKQTVRLSWGHN 135
IG VRLSWG +
Sbjct: 340 FPIGNSRVRLSWGRS 354
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F SR AK+ D TG +KGYGFV+FG+E E+ R+++EM G
Sbjct: 151 NVTESQLFELFISRYSSTLNAKIVFDQGTGVSKGYGFVKFGNEAEQQRSLLEMQG 205
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 24/144 (16%)
Query: 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEM-----------------N 54
+ L E + K+ +S+ G GY FV F + A+++ +
Sbjct: 73 ATLGEANVQVKLIKNSSGGGNSGYCFVEFPSNLAATNALLKTGLPIPVDASRTLKLNWAS 132
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFAN 107
+ + +IFVG L NV++ L ELF S + L+ KI V KG GFV+F N
Sbjct: 133 FATTPGSEFSIFVGDLAPNVTESQLFELFISRYSSTLNAKIVFDQGTGVSKGYGFVKFGN 192
Query: 108 RKDAEVALQKLQGTAIGKQTVRLS 131
+ + +L ++QG + + +R+S
Sbjct: 193 EAEQQRSLLEMQGVFLNGRAIRVS 216
>gi|388851881|emb|CCF54475.1| related to NAM8-meiotic recombination protein [Ustilago hordei]
Length = 926
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/86 (51%), Positives = 57/86 (66%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
N S NN T+FVG L S +S++ LR F HFGEI VKIP GKGCGFVQ+ ++DAE
Sbjct: 586 NDSAADPNNTTVFVGGLSSLISEQTLRRYFEHFGEITYVKIPPGKGCGFVQYVRKQDAEN 645
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNK 139
A+ ++ G I +RLSWG + G+K
Sbjct: 646 AIHRMNGFPILNSKIRLSWGRSQGDK 671
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D G +KGYGFVRF E + +RA++EM G
Sbjct: 372 AKIMTDPVAGVSKGYGFVRFALEADCNRALVEMQG 406
>gi|374107618|gb|AEY96526.1| FADR307Wp [Ashbya gossypii FDAG1]
Length = 565
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 54/75 (72%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG+I+ VKIPVGKGCGFVQ+ +R AE A+ K+QG
Sbjct: 280 NNTTVFIGGLSSLVTEDELRAYFQPFGQIVYVKIPVGKGCGFVQYVDRSSAENAIAKMQG 339
Query: 121 TAIGKQTVRLSWGHN 135
IG VRLSWG +
Sbjct: 340 FPIGNSRVRLSWGRS 354
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-SR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F SR AK+ D TG +KGYGFV+FG+E E+ R+++EM G
Sbjct: 151 NVTESQLFELFISRYSSTLNAKIVFDQGTGVSKGYGFVKFGNEAEQQRSLLEMQG 205
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 24/144 (16%)
Query: 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEM-----------------N 54
+ L E + K+ +S+ G GY FV F + A+++ +
Sbjct: 73 ATLGEANVQVKLIKNSSGGGNSGYCFVEFPSNLAATNALLKTGLPIPVDASRTLKLNWAS 132
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFAN 107
+ + +IFVG L NV++ L ELF S + L+ KI V KG GFV+F N
Sbjct: 133 FATTPGSEFSIFVGDLAPNVTESQLFELFISRYSSTLNAKIVFDQGTGVSKGYGFVKFGN 192
Query: 108 RKDAEVALQKLQGTAIGKQTVRLS 131
+ + +L ++QG + + +R+S
Sbjct: 193 EAEQQRSLLEMQGVFLNGRAIRVS 216
>gi|2130979|dbj|BAA11919.1| csx1+ [Schizosaccharomyces pombe]
Length = 125
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 9/100 (9%)
Query: 45 ERSRAMIEMNGSDGKSN---------NATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
E +R ++ + S+ + N N T+FVG L SN+S+KDL+ F FG IL++KIP
Sbjct: 2 ESARGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIP 61
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
GKGCGFVQ++ + AE A+ +QG +G +RL+WGHN
Sbjct: 62 FGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 101
>gi|357454295|ref|XP_003597428.1| RNA-binding protein [Medicago truncatula]
gi|355486476|gb|AES67679.1| RNA-binding protein [Medicago truncatula]
Length = 428
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 58/80 (72%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN TI+VG LD NVS+++L++ F FGEI+SVK+ GK CGFVQF R AE A+QK+QG
Sbjct: 232 NNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVHPGKACGFVQFGARASAEEAIQKMQG 291
Query: 121 TAIGKQTVRLSWGHNPGNKQ 140
+G+Q +R+SWG +Q
Sbjct: 292 KILGQQVIRVSWGRPQTARQ 311
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 39/56 (69%), Gaps = 7/56 (12%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T+ +LQETF AKV D NTG +KGYGFV+F DE+ER+RAM EMNG
Sbjct: 117 PDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNG 172
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 29/139 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
K+ + TG +GYGF+ F + R + NG+ T
Sbjct: 45 KIIRNKITGQPEGYGFIEFVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDA 104
Query: 65 -----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
IFVG L +V+D L+E F +H+G + K+ KG GFV+F++ +
Sbjct: 105 GPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERN 164
Query: 113 VALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 165 RAMSEMNGVYCSTRPMRIS 183
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L FSH GE++S+KI K G GF++F + AE LQ
Sbjct: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + +QT RL+W
Sbjct: 76 YNGTQMPGTEQTFRLNWA 93
>gi|444313983|ref|XP_004177649.1| hypothetical protein TBLA_0A03300 [Tetrapisispora blattae CBS 6284]
gi|387510688|emb|CCH58130.1| hypothetical protein TBLA_0A03300 [Tetrapisispora blattae CBS 6284]
Length = 362
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 44/161 (27%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------- 55
+F ++ D NT ++G ++F + E + ++E+ G
Sbjct: 165 SFDTVEILRDPNTSASRGLALIQFKEGIEMQKILVELQGIHLSQSALPLTILQFTKQYTL 224
Query: 56 SDGKSN-----------------------NATIFVGALDSNVSDKDLRELFSHFGEILSV 92
S SN N T+F+G L S V++ +LR LF FGEI+ V
Sbjct: 225 SHSYSNSPSPLLFSSHSLSSSSSSLEDPTNTTVFIGGLSSLVTENELRSLFQPFGEIVYV 284
Query: 93 KIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KIP GKGCGFVQ+ RK AE+A+ K++G +I +RLSWG
Sbjct: 285 KIPFGKGCGFVQYETRKAAELAIHKMKGVSIKNSKIRLSWG 325
>gi|366996152|ref|XP_003677839.1| hypothetical protein NCAS_0H01810 [Naumovozyma castellii CBS 4309]
gi|342303709|emb|CCC71491.1| hypothetical protein NCAS_0H01810 [Naumovozyma castellii CBS 4309]
Length = 443
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+F+G L S VS+ DLR+ F FG+I+ VKIP GKGCGFVQ+ +R AE+A+ K+Q
Sbjct: 280 PNNTTVFIGGLSSLVSEDDLRQYFQPFGDIIYVKIPTGKGCGFVQYVDRLSAELAISKMQ 339
Query: 120 GTAIGKQTVRLSWG 133
G + +RLSWG
Sbjct: 340 GFPLANSRIRLSWG 353
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 14 LQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIE--------------MN----G 55
L E+ K+ +SN G +GY FV F + A+++ +N G
Sbjct: 70 LGESNVHVKMMWNSNLGVNQGYCFVEFPSMEHGNNALLKNGIVIPGFPQRRLKLNWASAG 129
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFANR 108
++G ++ ++FVG L NV++ L ELF + K+ V K GFV+F +
Sbjct: 130 ANGNNSGFSVFVGDLSPNVTEAQLFELFIGRYPSTCHAKVVHDQLTGVSKCYGFVKFNSA 189
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
D + L ++QG + +++++
Sbjct: 190 TDQQRVLVEMQGVFLNGRSIKV 211
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNATIFVGALDSNVSDKD 78
AKV D TG +K YGFV+F ++ R ++EM G +G+S + GA + N +
Sbjct: 167 AKVVHDQLTGVSKCYGFVKFNSATDQQRVLVEMQGVFLNGRSIKVGLTGGAHNDNSNTNS 226
Query: 79 LRELFSHFG 87
+ S FG
Sbjct: 227 MAGGRSRFG 235
>gi|254566455|ref|XP_002490338.1| RNA binding protein that negatively regulates growth rate
[Komagataella pastoris GS115]
gi|238030134|emb|CAY68057.1| RNA binding protein that negatively regulates growth rate
[Komagataella pastoris GS115]
gi|328350732|emb|CCA37132.1| Uncharacterized RNA-binding protein C23E6.01c [Komagataella
pastoris CBS 7435]
Length = 506
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 59/179 (32%), Positives = 83/179 (46%), Gaps = 50/179 (27%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------- 55
+ +V D TG ++ +GFVRF +E +R RA+ EM+G
Sbjct: 182 SIQSVRVMTDPATGSSRCFGFVRFTEEEDRQRALHEMSGIWLGGRPIRVALATPRGAGHQ 241
Query: 56 ---------------------SDGKSN--------NATIFVGALDSNVSDKDLRELFSHF 86
S+ S+ N+T+FVG L + VS++ L LF F
Sbjct: 242 PVQMQQHLQYAPSAPMVPQFASNNSSSRNIYNDPTNSTVFVGGLAAGVSEETLFTLFEPF 301
Query: 87 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
G I S+KIP GKGCGFV+F+ R++AE A+ + G IG VRLSWG + Q H
Sbjct: 302 GSISSIKIPRGKGCGFVKFSTREEAENAISGMHGFLIGGSRVRLSWGRSSLPNQHTHSH 360
>gi|347840237|emb|CCD54809.1| hypothetical protein [Botryotinia fuckeliana]
Length = 218
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 104 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 163
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 164 GYPIGNSRVRLSWGRS 179
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D +G ++GYGFVRF +E ++ RA+ EM G
Sbjct: 3 DPISGMSRGYGFVRFAEEGDQQRALTEMQG 32
>gi|83774240|dbj|BAE64365.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 488
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 52/78 (66%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++QG
Sbjct: 282 NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQG 341
Query: 121 TAIGKQTVRLSWGHNPGN 138
IG VRLSWG + N
Sbjct: 342 YPIGNSRVRLSWGRSQNN 359
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETF---SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 176 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQG 222
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------D 57
K+ D +G GY FV F ++A+ +NG+ D
Sbjct: 94 KMIRDKFSGSNAGYCFVDFSSPAAAAKAL-SLNGTPMPNTNRLFKLNWATGGGLADRSRD 152
Query: 58 GKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKD 110
+ +IFVG L V++ L LF S F S KI P+ +G GFV+F++ D
Sbjct: 153 DRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEND 212
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+ AL ++QG G + +R+S P NK
Sbjct: 213 QQRALSEMQGVYCGNRPMRISTA-TPKNK 240
>gi|327296686|ref|XP_003233037.1| hypothetical protein TERG_06034 [Trichophyton rubrum CBS 118892]
gi|326464343|gb|EGD89796.1| hypothetical protein TERG_06034 [Trichophyton rubrum CBS 118892]
Length = 224
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 106 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 165
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 166 GYPIGNSRVRLSWGRS 181
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D TG ++GYGFVRF DE ++ RA+ EM G
Sbjct: 3 DPITGLSRGYGFVRFSDETDQQRALSEMQG 32
>gi|189197507|ref|XP_001935091.1| mRNA binding post-transcriptional regulator (Csx1) [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187981039|gb|EDU47665.1| mRNA binding post-transcriptional regulator (Csx1) [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 490
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 305 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 364
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 365 GYPIGNSRVRLSWGRS 380
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 52 EMNGSDGKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKI---PVG---KGCGFVQ 104
E N D + ++FVG L V++ L +LF + + S KI P+ +G GFV+
Sbjct: 165 ESNSRDERGPEFSVFVGDLGPEVTEFVLVQLFQNKYASTKSAKIMSDPISGMSRGYGFVR 224
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLS 131
FA+ D + AL ++QG G + +R+S
Sbjct: 225 FASEDDQQKALTEMQGVYCGNRPMRIS 251
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 7 SDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T +L + F AK+ D +G ++GYGFVRF E+++ +A+ EM G
Sbjct: 185 PEVTEFVLVQLFQNKYASTKSAKIMSDPISGMSRGYGFVRFASEDDQQKALTEMQG 240
>gi|303315831|ref|XP_003067920.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240107596|gb|EER25775.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320032017|gb|EFW13973.1| mRNA binding post-transcriptional regulator [Coccidioides posadasii
str. Silveira]
gi|392867443|gb|EAS29326.2| mRNA binding post-transcriptional regulator [Coccidioides immitis
RS]
Length = 400
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 286 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 345
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 346 GYPIGNSRVRLSWGRS 361
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 178 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRALTEMQG 224
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDA 111
++ +IFVG L V++ L LF S F S KI P+ +G GFV+F++ D
Sbjct: 156 RTPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQ 215
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 216 QRALTEMQGVYCGNRPMRIS 235
>gi|258576821|ref|XP_002542592.1| hypothetical protein UREG_02108 [Uncinocarpus reesii 1704]
gi|237902858|gb|EEP77259.1| hypothetical protein UREG_02108 [Uncinocarpus reesii 1704]
Length = 399
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 282 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 341
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 342 GYPIGNSRVRLSWGRS 357
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 174 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRALTEMQG 220
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDA 111
++ +IFVG L V++ L LF S F S KI P+ +G GFV+F++ D
Sbjct: 152 RTPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQ 211
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 212 QRALTEMQGVYCGNRPMRIS 231
>gi|119177688|ref|XP_001240593.1| hypothetical protein CIMG_07756 [Coccidioides immitis RS]
Length = 401
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 286 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 345
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 346 GYPIGNSRVRLSWGRS 361
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 178 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRALTEMQG 224
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDA 111
++ +IFVG L V++ L LF S F S KI P+ +G GFV+F++ D
Sbjct: 156 RTPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQ 215
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 216 QRALTEMQGVYCGNRPMRIS 235
>gi|451846221|gb|EMD59531.1| hypothetical protein COCSADRAFT_251085 [Cochliobolus sativus
ND90Pr]
Length = 406
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 286 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 345
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 346 GYPIGNSRVRLSWGRS 361
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L +LF + + S KI P+ +G GFV+FA+ +
Sbjct: 151 DERGPEFSIFVGDLGPEVTEFVLVQLFQNKYPSTKSAKIMSDPISGMSRGYGFVRFASEE 210
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 211 DQQKALTEMQGVYCGNRPMRIS 232
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 7 SDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T +L + F AK+ D +G ++GYGFVRF E ++ +A+ EM G
Sbjct: 166 PEVTEFVLVQLFQNKYPSTKSAKIMSDPISGMSRGYGFVRFASEEDQQKALTEMQG 221
>gi|380478379|emb|CCF43635.1| RNA recognition domain-containing protein, partial [Colletotrichum
higginsianum]
Length = 419
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 51/74 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 291 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 350
Query: 120 GTAIGKQTVRLSWG 133
G IG VRLSWG
Sbjct: 351 GYPIGNSRVRLSWG 364
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DE ++ RA++EM G
Sbjct: 170 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFTDEQDQQRALVEMQG 216
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D +G+ GY FV F + S+A + +NG+ D
Sbjct: 90 KVIRDKTSGNA-GYCFVEFSSSDAASKA-LGLNGTPVPNSNRAFKLNWASGGGINDRRDD 147
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F + +D
Sbjct: 148 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFTDEQDQ 207
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 208 QRALVEMQGVYCGNRPMRIS 227
>gi|169616740|ref|XP_001801785.1| hypothetical protein SNOG_11545 [Phaeosphaeria nodorum SN15]
gi|111060133|gb|EAT81253.1| hypothetical protein SNOG_11545 [Phaeosphaeria nodorum SN15]
Length = 408
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 283 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 342
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 343 GYPIGNSRVRLSWGRS 358
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF------SHFGEILSVKIP-VGKGCGFVQFANRK 109
D + +IFVG L V++ L +LF + +I+S I + +G GFV+FA+
Sbjct: 148 DERGPEYSIFVGDLGPEVTEFVLVQLFQNKYRSTKSAKIMSDPISGMSRGYGFVRFADEA 207
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL +QG G + +R+S
Sbjct: 208 DQQKALTDMQGVYCGNRPMRIS 229
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 7 SDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T +L + F AK+ D +G ++GYGFVRF DE ++ +A+ +M G
Sbjct: 163 PEVTEFVLVQLFQNKYRSTKSAKIMSDPISGMSRGYGFVRFADEADQQKALTDMQG 218
>gi|451993069|gb|EMD85544.1| hypothetical protein COCHEDRAFT_1035442 [Cochliobolus
heterostrophus C5]
Length = 409
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 289 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 348
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 349 GYPIGNSRVRLSWGRS 364
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L +LF + + S KI P+ +G GFV+FA+ +
Sbjct: 154 DERGPEFSIFVGDLGPEVTEFVLVQLFQNKYPSTKSAKIMSDPISGMSRGYGFVRFASEE 213
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 214 DQQKALTEMQGVYCGNRPMRIS 235
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 7 SDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T +L + F AK+ D +G ++GYGFVRF E ++ +A+ EM G
Sbjct: 169 PEVTEFVLVQLFQNKYPSTKSAKIMSDPISGMSRGYGFVRFASEEDQQKALTEMQG 224
>gi|345561228|gb|EGX44324.1| hypothetical protein AOL_s00193g52 [Arthrobotrys oligospora ATCC
24927]
Length = 461
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 275 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 334
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 335 GYPIGNSRVRLSWGRS 350
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 180 AKIMTDPISGMSRGYGFVRFADEMDQQRALTEMQG 214
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF F S KI P+ +G GFV+FA+
Sbjct: 144 DDRGPEYSIFVGDLGPEVNEFVLVSLFQGRFQSCKSAKIMTDPISGMSRGYGFVRFADEM 203
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 204 DQQRALTEMQGVYCGNRPMRIS 225
>gi|212546039|ref|XP_002153173.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Talaromyces marneffei ATCC 18224]
gi|210064693|gb|EEA18788.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Talaromyces marneffei ATCC 18224]
Length = 392
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 278 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 337
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 338 GYPIGNSRVRLSWGRS 353
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 171 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQG 217
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 30/140 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAM-------------IEMN----------GSDG 58
K+ D +G GY FV F +A+ ++N G D
Sbjct: 89 KMIRDKFSGSNAGYCFVDFSSAAAAGKALSLNGTPMPNTTRAFKLNWATGGGLADRGRDE 148
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDA 111
+ +IFVG L V++ L LF S F S KI P+ +G GFV+F++ D
Sbjct: 149 RGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQ 208
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 209 QRALSEMQGVYCGNRPMRIS 228
>gi|440636370|gb|ELR06289.1| hypothetical protein, variant [Geomyces destructans 20631-21]
gi|440636371|gb|ELR06290.1| hypothetical protein GMDG_07882 [Geomyces destructans 20631-21]
Length = 411
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 298 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 357
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 358 GYPIGNSRVRLSWGRS 373
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 185 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEGDQQRALTEMQG 231
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 161 DDRGPEFSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEG 220
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 221 DQQRALTEMQGVYCGNRPMRIS 242
>gi|358056882|dbj|GAA97232.1| hypothetical protein E5Q_03908 [Mixia osmundae IAM 14324]
Length = 683
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 3/91 (3%)
Query: 51 IEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKD 110
I N +D NN T+FVG L + +S++ LR F HFG+I VKIP KGCGFVQF R+D
Sbjct: 375 ITNNAND--PNNTTVFVGGLPACISEETLRNFFQHFGDITYVKIPPNKGCGFVQFVRRQD 432
Query: 111 AEVALQKLQGTAI-GKQTVRLSWGHNPGNKQ 140
AE+A+ K+ I GK +RLSWG + G+KQ
Sbjct: 433 AELAILKMHDFPIHGKSRIRLSWGRSQGDKQ 463
>gi|350295821|gb|EGZ76798.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 523
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 53/78 (67%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++QG
Sbjct: 302 NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQG 361
Query: 121 TAIGKQTVRLSWGHNPGN 138
IG VRLSWG + N
Sbjct: 362 YPIGNSRVRLSWGRSQNN 379
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETF---SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE ++ RA++EM G
Sbjct: 186 SLFQSRFPSCKSAKIMTDAMTGQSRGYGFVRFSDEGDQQRALVEMQG 232
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 6 VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------- 56
+ ++ ++L ET + KV D N+G+ GY F+ F E ++ + +NG+
Sbjct: 91 IKNVFTTVLGETV-QVKVIRDRNSGNA-GYCFIEFATP-EAAQKALNLNGTPVPNSNRAF 147
Query: 57 --------------DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV----- 96
D + +IFVG L V++ L LF S F S KI
Sbjct: 148 KLNWASGGGLIDRRDDRGPEYSIFVGDLGPEVNEFVLVSLFQSRFPSCKSAKIMTDAMTG 207
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G GFV+F++ D + AL ++QG G + +R+S G H H
Sbjct: 208 QSRGYGFVRFSDEGDQQRALVEMQGVYCGNRPMRISTATPKTRTHQYGAHAPH 260
>gi|310798962|gb|EFQ33855.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 419
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 51/74 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 291 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 350
Query: 120 GTAIGKQTVRLSWG 133
G IG VRLSWG
Sbjct: 351 GYPIGNSRVRLSWG 364
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DE ++ RA++EM G
Sbjct: 170 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFTDEQDQQRALVEMQG 216
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D +G+ GY FV F S+A+ +NGS D
Sbjct: 90 KVIRDKTSGNA-GYCFVEFTSSEAASKALT-LNGSPVPNSNRAFKLNWASGGGINDRRDD 147
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F + +D
Sbjct: 148 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFTDEQDQ 207
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 208 QRALVEMQGVYCGNRPMRIS 227
>gi|115385346|ref|XP_001209220.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196912|gb|EAU38612.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 306
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 184 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 243
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 244 GYPIGNSRVRLSWGRS 259
>gi|452982866|gb|EME82624.1| hypothetical protein MYCFIDRAFT_51313 [Pseudocercospora fijiensis
CIRAD86]
Length = 414
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 301 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 360
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 361 GYPIGNSRVRLSWGRS 376
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 32/141 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------D 57
K+ D +G GY FV F + + +RA + +NG D
Sbjct: 111 KMIRDKFSGSNAGYCFVDFENPDSAARA-LALNGQMIPNSNRQFKLNWASGGGLADRSRD 169
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKI---PVG---KGCGFVQFANRKD 110
+ +IFVG L V++ L LF + + S KI P+ +G GFV+FA+ D
Sbjct: 170 DRGPEYSIFVGDLGPEVNEYVLMSLFQNKYPSCKSAKIMSDPISGMSRGYGFVRFADETD 229
Query: 111 AEVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 230 QQKALHEMQGVYCGNRPMRIS 250
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 9 ITNSILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+ S+ Q + AK+ D +G ++GYGFVRF DE ++ +A+ EM G
Sbjct: 190 VLMSLFQNKYPSCKSAKIMSDPISGMSRGYGFVRFADETDQQKALHEMQG 239
>gi|302656875|ref|XP_003020176.1| hypothetical protein TRV_05751 [Trichophyton verrucosum HKI 0517]
gi|291183977|gb|EFE39558.1| hypothetical protein TRV_05751 [Trichophyton verrucosum HKI 0517]
Length = 281
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 166 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 225
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 226 GYPIGNSRVRLSWGRS 241
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 9 ITNSILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+ S+ Q F AK+ D TG ++GYGFVRF DE ++ RA+ EM G
Sbjct: 43 VLVSLFQSRFPSCKSAKIMTDPITGLSRGYGFVRFSDETDQQRALSEMQG 92
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 64 TIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQ 116
+IFVG L V++ L LF S F S KI P+ +G GFV+F++ D + AL
Sbjct: 29 SIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPITGLSRGYGFVRFSDETDQQRALS 88
Query: 117 KLQGTAIGKQTVRLSWGHNPGNK 139
++QG G + +R+S P NK
Sbjct: 89 EMQGVYCGNRPMRISTA-TPKNK 110
>gi|261199113|ref|XP_002625958.1| mRNA binding post-transcriptional regulator [Ajellomyces
dermatitidis SLH14081]
gi|239595110|gb|EEQ77691.1| mRNA binding post-transcriptional regulator [Ajellomyces
dermatitidis SLH14081]
gi|327353834|gb|EGE82691.1| hypothetical protein BDDG_05635 [Ajellomyces dermatitidis ATCC
18188]
Length = 399
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 284 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 343
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 344 GYPIGNSRVRLSWGRS 359
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
GYC V T + + + + I NT T + G +RSR + +
Sbjct: 107 GYCFVDFTTPAAAAKALTLSGTPIP-NTSRTFKLNWASGGGLADRSR--------EERGP 157
Query: 62 NATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDAEVA 114
+IFVG L V++ L LF S F S KI P+ +G GFV+F++ D + A
Sbjct: 158 EFSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRA 217
Query: 115 LQKLQGTAIGKQTVRLSWGHNPGNK 139
L ++QG G + +R+S P NK
Sbjct: 218 LTEMQGVYCGNRPMRISTA-TPKNK 241
>gi|242824554|ref|XP_002488282.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Talaromyces stipitatus ATCC 10500]
gi|218713203|gb|EED12628.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Talaromyces stipitatus ATCC 10500]
Length = 392
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 278 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 337
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 338 GYPIGNSRVRLSWGRS 353
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 171 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQG 217
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFAN 107
G D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 145 GRDERGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSD 204
Query: 108 RKDAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 205 ENDQQRALSEMQGVYCGNRPMRIS 228
>gi|378727642|gb|EHY54101.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 398
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 285 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 344
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 345 GYPIGNSRVRLSWGRS 360
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 175 SLFQSRFPSCKSAKIMTDPLSGMSRGYGFVRFSDEGDQQRALTEMQG 221
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 31/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
K+ D +G GY FV F ++A ++++G D
Sbjct: 94 KMIRDKFSGSNAGYCFVDFSSPQAAAKA-LQLSGQPMPNSTRPFKLNWATGGGLADRRDD 152
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDA 111
+ +IFVG L V++ L LF S F S KI P+ +G GFV+F++ D
Sbjct: 153 RGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPLSGMSRGYGFVRFSDEGDQ 212
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 213 QRALTEMQGVYCGNRPMRIS 232
>gi|242824548|ref|XP_002488281.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Talaromyces stipitatus ATCC 10500]
gi|218713202|gb|EED12627.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Talaromyces stipitatus ATCC 10500]
Length = 393
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 278 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 337
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 338 GYPIGNSRVRLSWGRS 353
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 171 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQG 217
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFAN 107
G D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 145 GRDERGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSD 204
Query: 108 RKDAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 205 ENDQQRALSEMQGVYCGNRPMRIS 228
>gi|453086344|gb|EMF14386.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 425
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 312 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 371
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 372 GYPIGNSRVRLSWGRS 387
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 32/141 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------D 57
K+ D +G GY FV F + + RA +++NG D
Sbjct: 113 KMIRDKFSGSNAGYCFVDFENPDAAGRA-LQLNGQVIPNSNRQFKLNWASGGGLADRSRD 171
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKI---PVG---KGCGFVQFANRKD 110
+ +IFVG L V++ L LF + + S KI P+ +G GFV+FA+ +D
Sbjct: 172 DRGPEYSIFVGDLGPEVNEYVLMSLFQNKYPSCKSAKIMSDPISGMSRGYGFVRFADEQD 231
Query: 111 AEVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 232 QQKALHEMQGVYCGNRPMRIS 252
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 9 ITNSILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+ S+ Q + AK+ D +G ++GYGFVRF DE ++ +A+ EM G
Sbjct: 192 VLMSLFQNKYPSCKSAKIMSDPISGMSRGYGFVRFADEQDQQKALHEMQG 241
>gi|240280986|gb|EER44489.1| mRNA binding post-transcriptional regulator [Ajellomyces capsulatus
H143]
gi|325092520|gb|EGC45830.1| mRNA binding post-transcriptional regulator [Ajellomyces capsulatus
H88]
Length = 399
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 284 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 343
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 344 GYPIGNSRVRLSWGRS 359
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
GYC V T + + + + I NT T + G +RSR + +
Sbjct: 107 GYCFVDFTTPAAAAKALTLSGTPIP-NTSRTFKLNWASGGGLADRSR--------EERGP 157
Query: 62 NATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDAEVA 114
+IFVG L V++ L LF S F S KI P+ +G GFV+F++ D + A
Sbjct: 158 EFSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRA 217
Query: 115 LQKLQGTAIGKQTVRLSWGHNPGNK 139
L ++QG G + +R+S P NK
Sbjct: 218 LTEMQGVYCGNRPMRISTA-TPKNK 241
>gi|396480654|ref|XP_003841045.1| hypothetical protein LEMA_P089750.1 [Leptosphaeria maculans JN3]
gi|312217619|emb|CBX97566.1| hypothetical protein LEMA_P089750.1 [Leptosphaeria maculans JN3]
Length = 433
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 293 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 352
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 353 GYPIGNSRVRLSWGRS 368
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L +LF + + S KI P+ +G GFV+FA+ +
Sbjct: 159 DERGPEYSIFVGDLGPEVTEFVLVQLFQNKYPSTKSAKIMSDPISGMSRGYGFVRFASEE 218
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
D + AL ++QG G + +R+S P NK
Sbjct: 219 DQQKALTEMQGVYCGNRPMRISTA-TPKNK 247
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 7 SDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T +L + F AK+ D +G ++GYGFVRF E ++ +A+ EM G
Sbjct: 174 PEVTEFVLVQLFQNKYPSTKSAKIMSDPISGMSRGYGFVRFASEEDQQKALTEMQG 229
>gi|407925486|gb|EKG18497.1| hypothetical protein MPH_04299 [Macrophomina phaseolina MS6]
Length = 311
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 195 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 254
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 255 GYPIGNSRVRLSWGRS 270
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D +G ++GYGFVRF DE+E+ RA+ EM G
Sbjct: 98 AKIMSDPISGMSRGYGFVRFSDESEQQRALNEMQG 132
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF + S KI P+ +G GFV+F++
Sbjct: 62 DDRGPEYSIFVGDLGPEVNEYVLVSLFQGKYPSCKSAKIMSDPISGMSRGYGFVRFSDES 121
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+ + AL ++QG G + +R+S P NK
Sbjct: 122 EQQRALNEMQGVYCGNRPMRISTA-TPKNK 150
>gi|322705595|gb|EFY97180.1| mRNA binding post-transcriptional regulator [Metarhizium anisopliae
ARSEF 23]
Length = 390
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 253 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 312
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 313 GYPIGNSRVRLSWGRS 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 139 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 185
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F ++A + +NG+ D
Sbjct: 59 KVIRDKNSGNA-GYCFVEFTTPEAATKA-LGLNGTPVPNSSRQFKLNWASGGGLVDRRDD 116
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 117 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 176
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 177 QRALVEMQGVYCGNRPMRIS 196
>gi|154279514|ref|XP_001540570.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412513|gb|EDN07900.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 422
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 308 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 367
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 368 GYPIGNSRVRLSWGRS 383
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
GYC V T + + + + I NT T + G +RSR + +
Sbjct: 131 GYCFVDFTTPAAAAKALTLSGTPIP-NTSRTFKLNWASGGGLADRSR--------EERGP 181
Query: 62 NATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDAEVA 114
+IFVG L V++ L LF S F S KI P+ +G GFV+F++ D + A
Sbjct: 182 EFSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRA 241
Query: 115 LQKLQGTAIGKQTVRLSWGHNPGNK 139
L ++QG G + +R+S P NK
Sbjct: 242 LTEMQGVYCGNRPMRISTA-TPKNK 265
>gi|225562584|gb|EEH10863.1| RNA-binding protein [Ajellomyces capsulatus G186AR]
Length = 427
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 298 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 357
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 358 GYPIGNSRVRLSWGRS 373
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
GYC V T + + + + I NT T + G +RSR + +
Sbjct: 121 GYCFVDFTTPAAAAKALTLSGTPIP-NTSRTFKLNWASGGGLADRSR--------EERGP 171
Query: 62 NATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDAEVA 114
+IFVG L V++ L LF S F S KI P+ +G GFV+F++ D + A
Sbjct: 172 EFSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRA 231
Query: 115 LQKLQGTAIGKQTVRLSWGHNPGNK 139
L ++QG G + +R+S P NK
Sbjct: 232 LTEMQGVYCGNRPMRISTA-TPKNK 255
>gi|295661580|ref|XP_002791345.1| mRNA binding post-transcriptional regulator (Csx1)
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226280907|gb|EEH36473.1| mRNA binding post-transcriptional regulator (Csx1)
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 400
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 285 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 344
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 345 GYPIGNSRVRLSWGRS 360
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 177 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRALTEMQG 223
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
GYC V + + + + + I NT T + G +RSR + +
Sbjct: 107 GYCFVDFSSPAAAAKALTLSGTPI-PNTSRTFKLNWASGGGLADRSR--------EERGP 157
Query: 62 NATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDAEVA 114
+IFVG L V++ L LF S F S KI P+ +G GFV+F++ D + A
Sbjct: 158 EFSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRA 217
Query: 115 LQKLQGTAIGKQTVRLSWGHNPGNK 139
L ++QG G + +R+S P NK
Sbjct: 218 LTEMQGVYCGNRPMRISTA-TPKNK 241
>gi|452844119|gb|EME46053.1| hypothetical protein DOTSEDRAFT_70146 [Dothistroma septosporum
NZE10]
Length = 407
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 293 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 352
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 353 GYPIGNSRVRLSWGRS 368
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 32/141 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------D 57
K+ D +G GY FV F + +RA +++NG D
Sbjct: 101 KMIRDKFSGSNAGYCFVDFENPESATRA-LQLNGQVIPNSNRQFKLNWASGGGLADRSRD 159
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKI---PVG---KGCGFVQFANRKD 110
+ +IFVG L V++ L LF + S KI P+ +G GFV+FA+ D
Sbjct: 160 DRGPEYSIFVGDLGPEVNEYVLMSLFQGKYTSCKSAKIMSDPISGMSRGYGFVRFADEGD 219
Query: 111 AEVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 220 QQKALHEMQGVYCGNRPMRIS 240
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D +G ++GYGFVRF DE ++ +A+ EM G
Sbjct: 195 AKIMSDPISGMSRGYGFVRFADEGDQQKALHEMQG 229
>gi|340924065|gb|EGS18968.1| hypothetical protein CTHT_0055850 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 393
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 53/79 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 266 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 325
Query: 120 GTAIGKQTVRLSWGHNPGN 138
G IG VRLSWG + N
Sbjct: 326 GYPIGNSRVRLSWGRSQNN 344
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE + RA++EM G
Sbjct: 152 SLFQSRFPSCKSAKIMTDAMTGQSRGYGFVRFSDEADMQRALVEMQG 198
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 33/156 (21%)
Query: 6 VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------- 56
+ ++ +++ E+ + KV D N+G+ GY FV F E ++ + +NG+
Sbjct: 57 IKNVFQTVMGESV-QVKVIRDRNSGNA-GYCFVEF-QTPEAAQKALGLNGTPVPNSNRVF 113
Query: 57 --------------DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV----- 96
D + +IFVG L V++ L LF S F S KI
Sbjct: 114 KLNWASGGGLVDRRDDRGPEYSIFVGDLGPEVNEFVLVSLFQSRFPSCKSAKIMTDAMTG 173
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
+G GFV+F++ D + AL ++QG G + +R+S
Sbjct: 174 QSRGYGFVRFSDEADMQRALVEMQGVYCGNRPMRIS 209
>gi|322694638|gb|EFY86462.1| mRNA binding post-transcriptional regulator [Metarhizium acridum
CQMa 102]
Length = 384
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 253 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 312
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 313 GYPIGNSRVRLSWGRS 328
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 139 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 185
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F ++A + +NG+ D
Sbjct: 59 KVIRDKNSGNA-GYCFVEFTTPEAATKA-LGLNGTPVPNSSRQFKLNWASGGGLVDRRDD 116
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 117 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 176
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 177 QRALVEMQGVYCGNRPMRIS 196
>gi|226292803|gb|EEH48223.1| mRNA binding post-transcriptional regulator (Csx1)
[Paracoccidioides brasiliensis Pb18]
Length = 400
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 285 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 344
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 345 GYPIGNSRVRLSWGRS 360
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 177 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRALTEMQG 223
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
GYC V + + + + + I NT T + G +RSR + +
Sbjct: 107 GYCFVDFSSPAAAAKALTLSGTPIP-NTSRTFKLNWASGGGLADRSR--------EERGP 157
Query: 62 NATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDAEVA 114
+IFVG L V++ L LF S F S KI P+ +G GFV+F++ D + A
Sbjct: 158 EFSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRA 217
Query: 115 LQKLQGTAIGKQTVRLSWGHNPGNK 139
L ++QG G + +R+S P NK
Sbjct: 218 LTEMQGVYCGNRPMRISTA-TPKNK 241
>gi|398412748|ref|XP_003857692.1| hypothetical protein MYCGRDRAFT_65137 [Zymoseptoria tritici IPO323]
gi|339477577|gb|EGP92668.1| hypothetical protein MYCGRDRAFT_65137 [Zymoseptoria tritici IPO323]
Length = 437
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 297 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 356
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 357 GYPIGNSRVRLSWGRS 372
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 32/141 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------D 57
K+ D +G GY FV F + ++ +RA +++NG D
Sbjct: 102 KMIRDKFSGSNAGYCFVDFENPDQATRA-LQLNGQVIPNSNRQFKLNWASGGGLADRSRD 160
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKI---PVG---KGCGFVQFANRKD 110
+ +IFVG L V++ L LF + S KI P+ +G GFV+FA+ +D
Sbjct: 161 DRGPEFSIFVGDLGPEVNEYVLMSLFQGKYTSCKSAKIMSDPISGMSRGYGFVRFADEQD 220
Query: 111 AEVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 221 QQKALHEMQGVYCGNRPMRIS 241
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D +G ++GYGFVRF DE ++ +A+ EM G
Sbjct: 196 AKIMSDPISGMSRGYGFVRFADEQDQQKALHEMQG 230
>gi|46122719|ref|XP_385913.1| hypothetical protein FG05737.1 [Gibberella zeae PH-1]
Length = 409
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 275 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 334
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 335 GYPIGNSRVRLSWGRS 350
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 160 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F ++A + MNGS D
Sbjct: 80 KVIRDKNSGNA-GYCFVEFQSPEAATKA-LNMNGSQVPNSSRSFKLNWASGGGLVDRRDD 137
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 138 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 197
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 198 QRALVEMQGVYCGNRPMRIS 217
>gi|367016893|ref|XP_003682945.1| hypothetical protein TDEL_0G03670 [Torulaspora delbrueckii]
gi|359750608|emb|CCE93734.1| hypothetical protein TDEL_0G03670 [Torulaspora delbrueckii]
Length = 617
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 53/75 (70%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L +++ L+ LFS FG IL+VKIP GK CGFV++ NR DAE A+Q +QG
Sbjct: 384 NNTTVFIGGLTPKINEAQLQALFSPFGNILTVKIPQGKNCGFVKYENRIDAEAAIQGMQG 443
Query: 121 TAIGKQTVRLSWGHN 135
+G VRLSWG N
Sbjct: 444 FIVGGNPVRLSWGRN 458
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q+ F K V D TG ++ +GFVRFG+E ER RA++EMNG
Sbjct: 221 SLFQQKFRSVKTVRVMTDPITGASRCFGFVRFGNEEERRRALVEMNG 267
>gi|225680559|gb|EEH18843.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 400
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 285 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 344
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 345 GYPIGNSRVRLSWGRS 360
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 177 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRALTEMQG 223
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
GYC V + + + + + I NT T + G +RSR + +
Sbjct: 107 GYCFVDFSSPAAAAKALTLSGTPIP-NTSRTFKLNWASGGGLADRSR--------EERGP 157
Query: 62 NATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKDAEVA 114
+IFVG L V++ L LF S F S KI P+ +G GFV+F++ D + A
Sbjct: 158 EFSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDETDQQRA 217
Query: 115 LQKLQGTAIGKQTVRLSWGHNPGNK 139
L ++QG G + +R+S P NK
Sbjct: 218 LTEMQGVYCGNRPMRISTA-TPKNK 241
>gi|410079368|ref|XP_003957265.1| hypothetical protein KAFR_0D04830 [Kazachstania africana CBS 2517]
gi|372463850|emb|CCF58130.1| hypothetical protein KAFR_0D04830 [Kazachstania africana CBS 2517]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 52/74 (70%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L S V++ +LRE F FG I+ VKIPVGKGCGFVQ+ +R AE A+ K+Q
Sbjct: 241 PNNTTVFVGGLSSLVTEDELREYFKPFGTIVYVKIPVGKGCGFVQYIDRVSAENAISKMQ 300
Query: 120 GTAIGKQTVRLSWG 133
G I +RLSWG
Sbjct: 301 GFPIANSRIRLSWG 314
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 24/120 (20%)
Query: 35 YGFVRFGDENERSRAMIE-----------------MNGSDGKSNNATIFVGALDSNVSDK 77
Y F+ F D S A+++ S SN +IFVG L NV++
Sbjct: 68 YCFITFLDSLTASNALLKNGMLIPGYGGKRLKLNWAQASSNASNGYSIFVGDLSPNVTEA 127
Query: 78 DLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
L +LF H + V +G GFV+F + D + AL ++QG + + +++
Sbjct: 128 QLFDLFINKYASTDHAKIVYDQATGVSRGYGFVRFNSLMDQQHALLEMQGIFLNGRAIKI 187
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D TG ++GYGFVRF ++ A++EM G
Sbjct: 143 AKIVYDQATGVSRGYGFVRFNSLMDQQHALLEMQG 177
>gi|367053249|ref|XP_003657003.1| hypothetical protein THITE_2132116 [Thielavia terrestris NRRL 8126]
gi|347004268|gb|AEO70667.1| hypothetical protein THITE_2132116 [Thielavia terrestris NRRL 8126]
Length = 396
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 53/79 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 266 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 325
Query: 120 GTAIGKQTVRLSWGHNPGN 138
G IG VRLSWG + N
Sbjct: 326 GYPIGNSRVRLSWGRSQNN 344
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE+E+ RA++EM G
Sbjct: 152 SLFQSRFPSCKSAKIMTDAMTGQSRGYGFVRFSDESEQQRALVEMQG 198
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 32/142 (22%)
Query: 20 RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS----------------------- 56
+ KV D N+G+ GY F+ F + +A+ +NG+
Sbjct: 70 QVKVIRDRNSGNA-GYCFIEFPTPDAAQKALT-LNGTPVPNSSRVFKLNWASGGGLVDRR 127
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI +G GFV+F++
Sbjct: 128 DDRGPEYSIFVGDLGPEVNEFVLVSLFQSRFPSCKSAKIMTDAMTGQSRGYGFVRFSDES 187
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
+ + AL ++QG G + +R+S
Sbjct: 188 EQQRALVEMQGVYCGNRAMRIS 209
>gi|400600479|gb|EJP68153.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 410
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 271 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 330
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 331 GYPIGNSRVRLSWGRS 346
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 159 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 205
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F + ++A + +NG+ D
Sbjct: 79 KVIRDKNSGNA-GYCFVEFQTADAATKA-LGLNGNPVPNSSRQFKLNWASGGGLVDRRDD 136
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 137 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 196
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 197 QRALVEMQGVYCGNRPMRIS 216
>gi|408392147|gb|EKJ71507.1| hypothetical protein FPSE_08320 [Fusarium pseudograminearum CS3096]
Length = 442
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 276 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 335
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 336 GYPIGNSRVRLSWGRS 351
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 160 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F ++A + MNGS D
Sbjct: 80 KVIRDKNSGNA-GYCFVEFQSPEAATKA-LNMNGSQVPNSSRSFKLNWASGGGLVDRRDD 137
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 138 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 197
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 198 QRALVEMQGVYCGNRPMRIS 217
>gi|361131740|gb|EHL03392.1| putative Uncharacterized RNA-binding protein C23E6.01c [Glarea
lozoyensis 74030]
Length = 391
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 278 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 337
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 338 GYPIGNSRVRLSWGRS 353
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 11/125 (8%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRE 81
K+ D +G+ GY F+ F ++A + +NG D + +IFVG L V++ L
Sbjct: 103 KMIRDKFSGNA-GYCFIDFSSPAAAAKA-LSLNGDD-RGPEFSIFVGDLGPEVNEYVLVS 159
Query: 82 LF-SHFGEILSVKI---PVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
LF + F S KI P+ +G GFV+FA+ +D + AL ++QG G + +R+S
Sbjct: 160 LFQARFPSCKSAKIMTDPISGMSRGYGFVRFADEQDQQRALTEMQGVYCGNRPMRISTA- 218
Query: 135 NPGNK 139
P NK
Sbjct: 219 TPKNK 223
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DE ++ RA+ EM G
Sbjct: 159 SLFQARFPSCKSAKIMTDPISGMSRGYGFVRFADEQDQQRALTEMQG 205
>gi|367019444|ref|XP_003659007.1| hypothetical protein MYCTH_2087998 [Myceliophthora thermophila ATCC
42464]
gi|347006274|gb|AEO53762.1| hypothetical protein MYCTH_2087998 [Myceliophthora thermophila ATCC
42464]
Length = 396
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 266 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 325
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 326 GYPIGNSRVRLSWGRS 341
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE ++ RA++EM G
Sbjct: 151 SLFQSRFPSCKSAKIMTDAMTGQSRGYGFVRFSDEADQQRALVEMQG 197
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 33/156 (21%)
Query: 6 VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------- 56
+ ++ ++L E + KV D ++G+ GY F+ FG E ++ + +NG+
Sbjct: 56 IKNVFQTVLAENV-QVKVIRDRHSGNA-GYCFIEFGTP-EAAQKALSLNGTPVPNSTRVF 112
Query: 57 --------------DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV----- 96
D + +IFVG L V++ L LF S F S KI
Sbjct: 113 KLNWASGGGLVDRRDDRGPEYSIFVGDLGPEVNEFVLVSLFQSRFPSCKSAKIMTDAMTG 172
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
+G GFV+F++ D + AL ++QG G + +R+S
Sbjct: 173 QSRGYGFVRFSDEADQQRALVEMQGVYCGNRPMRIS 208
>gi|342875796|gb|EGU77504.1| hypothetical protein FOXB_11986 [Fusarium oxysporum Fo5176]
Length = 405
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 51/74 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 270 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 329
Query: 120 GTAIGKQTVRLSWG 133
G IG VRLSWG
Sbjct: 330 GYPIGNSRVRLSWG 343
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 155 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 201
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F + A + MNG D
Sbjct: 75 KVIRDKNSGNA-GYCFVEFQSPEAATNA-LGMNGKPVPNSQRSFKLNWASGGGLVDRRDD 132
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 133 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 192
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 193 QRALVEMQGVYCGNRPMRIS 212
>gi|326524666|dbj|BAK04269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 408
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 53/79 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 277 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 336
Query: 120 GTAIGKQTVRLSWGHNPGN 138
G IG VRLSWG + N
Sbjct: 337 GYPIGNSRVRLSWGRSQNN 355
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 159 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 205
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 36/154 (23%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F ++A + +NGS D
Sbjct: 79 KVIRDKNSGNA-GYCFVEFQTPEAATKA-LALNGSGVPNSSRHFKLNWASGGGLVDRRDD 136
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 137 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 196
Query: 112 EVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
+ AL ++QG G + +R+S P N RG+H
Sbjct: 197 QRALVEMQGVYCGNRPMRISTA-TPKN---RGNH 226
>gi|302511659|ref|XP_003017781.1| hypothetical protein ARB_04665 [Arthroderma benhamiae CBS 112371]
gi|291181352|gb|EFE37136.1| hypothetical protein ARB_04665 [Arthroderma benhamiae CBS 112371]
Length = 428
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 52/79 (65%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 313 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 372
Query: 120 GTAIGKQTVRLSWGHNPGN 138
G IG VRLSWG + N
Sbjct: 373 GYPIGNSRVRLSWGRSQNN 391
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D TG ++GYGFVRF DE ++ RA+ EM G
Sbjct: 193 SLFQSRFPSCKSAKIMTDPITGLSRGYGFVRFSDETDQQRALSEMQG 239
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 64 TIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQ 116
+IFVG L V++ L LF S F S KI P+ +G GFV+F++ D + AL
Sbjct: 176 SIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPITGLSRGYGFVRFSDETDQQRALS 235
Query: 117 KLQGTAIGKQTVRLS 131
++QG G + +R+S
Sbjct: 236 EMQGVYCGNRPMRIS 250
>gi|255719794|ref|XP_002556177.1| KLTH0H06842p [Lachancea thermotolerans]
gi|238942143|emb|CAR30315.1| KLTH0H06842p [Lachancea thermotolerans CBS 6340]
Length = 547
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S+ S++ L LF+ FG I++VKIP GKGCGFV++A R DAE A+Q +QG
Sbjct: 404 NNTTVFIGGLTSHTSERQLHSLFAPFGTIINVKIPPGKGCGFVKYAYRIDAEAAIQGMQG 463
Query: 121 TAIGKQTVRLSWG 133
+G +RLSWG
Sbjct: 464 FIVGGNPIRLSWG 476
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68
S+ Q+ F K V D TG ++ +GFVRFGDE ER RA++EMNG + N +
Sbjct: 193 SLFQKKFKSVKTVRVMTDPITGASRCFGFVRFGDEQERRRALVEMNGVWCQGRNLRVAYA 252
Query: 69 ALDSNV 74
+NV
Sbjct: 253 TPRNNV 258
>gi|449302980|gb|EMC98988.1| hypothetical protein BAUCODRAFT_386817 [Baudoinia compniacensis
UAMH 10762]
Length = 431
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 53/79 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 306 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 365
Query: 120 GTAIGKQTVRLSWGHNPGN 138
G IG VRLSWG + N
Sbjct: 366 GYPIGNSRVRLSWGRSQNN 384
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 32/142 (22%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------ 56
K+ D +G GY FV F + + RA +++NG
Sbjct: 110 VKMIRDKFSGSNAGYCFVDFENTDSAGRA-LQLNGQMIPNSNRQFKLNWASGGGLADRSR 168
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF + S KI P+ +G GFV+F++ +
Sbjct: 169 DDRGPEYSIFVGDLGPEVNEYVLMSLFQGKYNSCKSAKIMSDPISGMSRGYGFVRFSDEQ 228
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 229 DQQKALHEMQGVYCGNRPMRIS 250
>gi|302420775|ref|XP_003008218.1| RNA-binding post-transcriptional regulator csx1 [Verticillium
albo-atrum VaMs.102]
gi|261353869|gb|EEY16297.1| RNA-binding post-transcriptional regulator csx1 [Verticillium
albo-atrum VaMs.102]
Length = 430
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 281 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 340
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 341 GYPIGNSRVRLSWGRS 356
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE ++ RA++EM G
Sbjct: 162 SLFQARFPSCKSAKIMTDAVTGQSRGYGFVRFTDEQDQQRALVEMQG 208
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D ++G+ GY FV F + S+A+ +NG+ D
Sbjct: 82 KVIRDKSSGNA-GYCFVEFNSTDAASKAL-ALNGTPVPNSARMFKLNWASGGGINDRRDD 139
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F + +D
Sbjct: 140 RGPEFSIFVGDLGPEVNEFVLVSLFQARFPSCKSAKIMTDAVTGQSRGYGFVRFTDEQDQ 199
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 200 QRALVEMQGVYCGNRPMRIS 219
>gi|425773059|gb|EKV11433.1| MRNA binding post-transcriptional regulator (Csx1), putative
[Penicillium digitatum Pd1]
gi|425778836|gb|EKV16941.1| MRNA binding post-transcriptional regulator (Csx1), putative
[Penicillium digitatum PHI26]
Length = 408
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 281 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 340
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 341 GYPIGNSRVRLSWGRS 356
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 173 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALTEMQG 219
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 149 DDRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEN 208
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 209 DQQRALTEMQGVYCGNRPMRIS 230
>gi|317155988|ref|XP_001825498.2| mRNA binding post-transcriptional regulator (Csx1) [Aspergillus
oryzae RIB40]
Length = 404
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 282 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 341
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 342 GYPIGNSRVRLSWGRS 357
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 177 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQG 223
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 153 DDRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEN 212
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
D + AL ++QG G + +R+S P NK
Sbjct: 213 DQQRALSEMQGVYCGNRPMRISTA-TPKNK 241
>gi|391868084|gb|EIT77307.1| RRM domain protein [Aspergillus oryzae 3.042]
Length = 395
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 281 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 340
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 341 GYPIGNSRVRLSWGRS 356
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------D 57
K+ D +G GY FV F ++A + +NG+ D
Sbjct: 94 KMIRDKFSGSNAGYCFVDFSSPAAAAKA-LSLNGTPMPNTNRLFKLNWATGGGLADRSRD 152
Query: 58 GKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKD 110
+ +IFVG L V++ L LF S F S KI P+ +G GFV+F++ D
Sbjct: 153 DRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEND 212
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+ AL ++QG G + +R+S P NK
Sbjct: 213 QQRALSEMQGVYCGNRPMRISTA-TPKNK 240
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 176 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQG 222
>gi|302893889|ref|XP_003045825.1| hypothetical protein NECHADRAFT_66100 [Nectria haematococca mpVI
77-13-4]
gi|256726752|gb|EEU40112.1| hypothetical protein NECHADRAFT_66100 [Nectria haematococca mpVI
77-13-4]
Length = 408
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 51/74 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 274 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 333
Query: 120 GTAIGKQTVRLSWG 133
G IG VRLSWG
Sbjct: 334 GYPIGNSRVRLSWG 347
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 161 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 207
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F + ++A + +NG+ D
Sbjct: 81 KVIRDKNSGNA-GYCFVEFQSPDAATKA-LGLNGTPVPNSSRQFKLNWASGGGLVDRRDD 138
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 139 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 198
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 199 QRALVEMQGVYCGNRPMRIS 218
>gi|363750388|ref|XP_003645411.1| hypothetical protein Ecym_3082 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889045|gb|AET38594.1| Hypothetical protein Ecym_3082 [Eremothecium cymbalariae
DBVPG#7215]
Length = 586
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 54/73 (73%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
+N T+F+G L++ +++ L+ LF FG ILSVK+P GKGCGFV+F +R DAE A+Q +QG
Sbjct: 396 SNTTVFIGGLNNQITESQLQSLFMPFGNILSVKVPPGKGCGFVKFEHRLDAEAAIQGMQG 455
Query: 121 TAIGKQTVRLSWG 133
+G +RLSWG
Sbjct: 456 FIVGNSAIRLSWG 468
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRF DE ER RA++EMNG
Sbjct: 181 SLFQTKFKSVKTVRVMTDPITGASRCFGFVRFADEQERRRALVEMNG 227
>gi|154296254|ref|XP_001548559.1| hypothetical protein BC1G_12954 [Botryotinia fuckeliana B05.10]
Length = 409
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 52/79 (65%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 300 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 359
Query: 120 GTAIGKQTVRLSWGHNPGN 138
G IG VRLSWG + N
Sbjct: 360 GYPIGNSRVRLSWGRSQNN 378
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF +E ++ RA+ EM G
Sbjct: 182 SLFQARFPSCKSAKIMTDPISGMSRGYGFVRFAEEGDQQRALTEMQG 228
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF + F S KI P+ +G GFV+FA
Sbjct: 158 DDRGPEFSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDPISGMSRGYGFVRFAEEG 217
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 218 DQQRALTEMQGVYCGNRPMRIS 239
>gi|346977902|gb|EGY21354.1| RNA-binding post-transcriptional regulator csx1 [Verticillium
dahliae VdLs.17]
Length = 418
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 281 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 340
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 341 GYPIGNSRVRLSWGRS 356
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE ++ RA++EM G
Sbjct: 162 SLFQARFPSCKSAKIMTDAVTGQSRGYGFVRFTDEQDQQRALVEMQG 208
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D ++G+ GY FV F + S+A + +NG+ D
Sbjct: 82 KVIRDKSSGNA-GYCFVEFNSTDAASKA-LALNGTPVPNSARMFKLNWASGGGINDRRDD 139
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F + +D
Sbjct: 140 RGPEFSIFVGDLGPEVNEFVLVSLFQARFPSCKSAKIMTDAVTGQSRGYGFVRFTDEQDQ 199
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 200 QRALVEMQGVYCGNRPMRIS 219
>gi|121709146|ref|XP_001272322.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Aspergillus clavatus NRRL 1]
gi|119400471|gb|EAW10896.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Aspergillus clavatus NRRL 1]
Length = 417
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 52/79 (65%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 283 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 342
Query: 120 GTAIGKQTVRLSWGHNPGN 138
G IG VRLSWG + N
Sbjct: 343 GYPIGNSRVRLSWGRSQNN 361
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 178 SLFQNRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALTEMQG 224
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF + F S KI P+ +G GFV+F++
Sbjct: 154 DDRGPEYSIFVGDLGPEVNEYVLVSLFQNRFPSCKSAKIMTDPISGMSRGYGFVRFSDEN 213
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 214 DQQRALTEMQGVYCGNRPMRIS 235
>gi|403214377|emb|CCK68878.1| hypothetical protein KNAG_0B04440 [Kazachstania naganishii CBS
8797]
Length = 397
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 56/82 (68%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L V +++LR+ F FGEI+ VKIPVGKGCGFVQ+ +R AE A+ ++QG
Sbjct: 292 NNTTVFIGGLSPLVKEEELRQYFQPFGEIVYVKIPVGKGCGFVQYIDRISAETAISQMQG 351
Query: 121 TAIGKQTVRLSWGHNPGNKQWR 142
I VRLSWG + +Q +
Sbjct: 352 FPISNSRVRLSWGRSAKQQQLQ 373
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
GYC + T+ + K++I GH + + + S A + G N
Sbjct: 104 GYCFIDFPTHFNASNALLKNKMSI---PGHPHKKLKLNWASSSAPSTAGVSTTGG----N 156
Query: 62 NATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEVA 114
N +IFVG L NV++ L +LF H ++ + V KG GF++F + D + A
Sbjct: 157 NFSIFVGDLAPNVTEAQLFDLFISRYPSTEHAKVVIDLSTGVSKGYGFIRFRDPADQQTA 216
Query: 115 LQKLQGTAIGKQTVRL 130
L ++QG + + +++
Sbjct: 217 LAEMQGVFLNGRALKV 232
>gi|315043939|ref|XP_003171345.1| RNA-binding post-transcriptional regulator csx1 [Arthroderma
gypseum CBS 118893]
gi|311343688|gb|EFR02891.1| RNA-binding post-transcriptional regulator csx1 [Arthroderma
gypseum CBS 118893]
Length = 412
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 294 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 353
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 354 GYPIGNSRVRLSWGRS 369
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D TG ++GYGFVRF DE ++ RA+ EM G
Sbjct: 174 SLFQSRFPSCKSAKIMTDPITGLSRGYGFVRFSDETDQQRALSEMQG 220
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 64 TIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQ 116
+IFVG L V++ L LF S F S KI P+ +G GFV+F++ D + AL
Sbjct: 157 SIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPITGLSRGYGFVRFSDETDQQRALS 216
Query: 117 KLQGTAIGKQTVRLS 131
++QG G + +R+S
Sbjct: 217 EMQGVYCGNRPMRIS 231
>gi|67904206|ref|XP_682359.1| hypothetical protein AN9090.2 [Aspergillus nidulans FGSC A4]
gi|40742733|gb|EAA61923.1| hypothetical protein AN9090.2 [Aspergillus nidulans FGSC A4]
gi|67043519|gb|AAY63883.1| putative RNA binding protein [Emericella nidulans]
gi|259485498|tpe|CBF82571.1| TPA: Putative RNA binding proteinPutative uncharacterized protein ;
[Source:UniProtKB/TrEMBL;Acc:Q5ARJ0] [Aspergillus
nidulans FGSC A4]
Length = 393
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 283 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 342
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 343 GYPIGNSRVRLSWGRS 358
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 178 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQG 224
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 154 DDRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEN 213
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 214 DQQRALSEMQGVYCGNRPMRIS 235
>gi|255954935|ref|XP_002568220.1| Pc21g11890 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589931|emb|CAP96086.1| Pc21g11890 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 408
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 281 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 340
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 341 GYPIGNSRVRLSWGRS 356
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 173 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALTEMQG 219
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRK 109
D + +IFVG L V++ L LF S F S KI P+ +G GFV+F++
Sbjct: 149 DDRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEN 208
Query: 110 DAEVALQKLQGTAIGKQTVRLS 131
D + AL ++QG G + +R+S
Sbjct: 209 DQQRALTEMQGVYCGNRPMRIS 230
>gi|320587473|gb|EFW99953.1| mRNA-binding post-transcriptional regulator [Grosmannia clavigera
kw1407]
Length = 399
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 272 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 331
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 332 GYPIGNSRVRLSWGRS 347
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE ++ RA++EM G
Sbjct: 153 SLFQARFPSCKSAKIMTDAVTGQSRGYGFVRFSDETDQQRALVEMQG 199
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D +G+ GY FV F + ++A+ +NGS D
Sbjct: 73 KVIRDRASGNA-GYCFVEFNTADAATKALT-LNGSPVPNSTRAFKLNWASGGGLVDRRDD 130
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+S +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 131 RSPEFSIFVGDLGPEVNEFVLVSLFQARFPSCKSAKIMTDAVTGQSRGYGFVRFSDETDQ 190
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 191 QRALVEMQGVYCGNRPMRIS 210
>gi|358401132|gb|EHK50447.1| hypothetical protein TRIATDRAFT_297212 [Trichoderma atroviride IMI
206040]
Length = 409
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 53/79 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 264 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 323
Query: 120 GTAIGKQTVRLSWGHNPGN 138
G IG VRLSWG + N
Sbjct: 324 GYPIGNSRVRLSWGRSQNN 342
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 140 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 186
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F + ++A + +NG D
Sbjct: 60 KVIRDKNSGNA-GYCFVEFPTPDSATKA-LGLNGQAVPNSQRQFKLNWASGGGLVDRRDD 117
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 118 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 177
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 178 QRALVEMQGVYCGNRPMRIS 197
>gi|238498926|ref|XP_002380698.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Aspergillus flavus NRRL3357]
gi|220693972|gb|EED50317.1| mRNA binding post-transcriptional regulator (Csx1), putative
[Aspergillus flavus NRRL3357]
Length = 427
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++Q
Sbjct: 305 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 364
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 365 GYPIGNSRVRLSWGRS 380
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 32/141 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------D 57
K+ D +G GY FV F ++A + +NG+ D
Sbjct: 118 KMIRDKFSGSNAGYCFVDFSSPAAAAKA-LSLNGTPMPNTNRLFKLNWATGGGLADRSRD 176
Query: 58 GKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PVG---KGCGFVQFANRKD 110
+ +IFVG L V++ L LF S F S KI P+ +G GFV+F++ D
Sbjct: 177 DRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEND 236
Query: 111 AEVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 237 QQRALSEMQGVYCGNRPMRIS 257
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D +G ++GYGFVRF DEN++ RA+ EM G
Sbjct: 200 SLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQG 246
>gi|358380439|gb|EHK18117.1| hypothetical protein TRIVIDRAFT_117191, partial [Trichoderma virens
Gv29-8]
Length = 417
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 53/79 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 280 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 339
Query: 120 GTAIGKQTVRLSWGHNPGN 138
G IG VRLSWG + N
Sbjct: 340 GYPIGNSRVRLSWGRSQNN 358
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 160 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 206
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F + ++A + +NG+ D
Sbjct: 80 KVIRDKNSGNA-GYCFVEFATPDAATKA-LGLNGTPVPNSSRQFKLNWASGGGLVDRRDD 137
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 138 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 197
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 198 QRALVEMQGVYCGNRPMRIS 217
>gi|340521165|gb|EGR51400.1| RNA-binding protein [Trichoderma reesei QM6a]
Length = 441
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 300 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 359
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 360 GYPIGNSRVRLSWGRS 375
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 179 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 225
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F + ++A + +NG+ D
Sbjct: 99 KVIRDKNSGNA-GYCFVEFATPDAATKA-LGLNGTPVPNSSRQFKLNWASGGGLVDRRDD 156
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 157 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 216
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 217 QRALVEMQGVYCGNRPMRIS 236
>gi|346325712|gb|EGX95309.1| mRNA binding post-transcriptional regulator [Cordyceps militaris
CM01]
Length = 474
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 53/79 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 335 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 394
Query: 120 GTAIGKQTVRLSWGHNPGN 138
G IG VRLSWG + N
Sbjct: 395 GYPIGNSRVRLSWGRSQNN 413
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DEN++ RA++EM G
Sbjct: 218 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQRALVEMQG 264
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D N+G+ GY FV F + + S+A + +NG+ D
Sbjct: 138 KVIRDKNSGNA-GYCFVEFQNADAASKA-LGLNGNPVPNSSRQFKLNWASGGGLVDRRDD 195
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F++ D
Sbjct: 196 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQ 255
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 256 QRALVEMQGVYCGNRPMRIS 275
>gi|365984507|ref|XP_003669086.1| hypothetical protein NDAI_0C01820 [Naumovozyma dairenensis CBS 421]
gi|343767854|emb|CCD23843.1| hypothetical protein NDAI_0C01820 [Naumovozyma dairenensis CBS 421]
Length = 498
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 52/75 (69%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L S V+++ LR F FG I+ VKIP+GKGCGFVQ+ +R AE A+ ++Q
Sbjct: 323 PNNTTVFVGGLSSMVTEEQLRHCFQPFGTIIYVKIPIGKGCGFVQYFDRISAETAILRMQ 382
Query: 120 GTAIGKQTVRLSWGH 134
G IG +RLSWG
Sbjct: 383 GFPIGNSRIRLSWGR 397
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 39/155 (25%)
Query: 14 LQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---------------- 57
L E K+ + N G +GY F+ F E S A+++ NG +
Sbjct: 93 LGEELINVKLIWNKNLGLNQGYCFIEFPSEQHASNALLK-NGINIPEFPRKKVKLNWTSS 151
Query: 58 ---------------GKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI---PV-- 96
S N ++FVG L +NV++ L +LF S F KI PV
Sbjct: 152 SSASLQGSSNSGQVPSTSTNYSVFVGDLAANVTEGQLFDLFISRFQSTCHAKIVHDPVTR 211
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
K GFV+F + +D + AL ++QG + + +++
Sbjct: 212 ASKCYGFVKFNDLRDQQRALVEMQGIFLNGRAIKI 246
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 5 QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
Q+ D+ S Q T AK+ D T +K YGFV+F D ++ RA++EM G
Sbjct: 187 QLFDLFISRFQST-CHAKIVHDPVTRASKCYGFVKFNDLRDQQRALVEMQG 236
>gi|336463751|gb|EGO51991.1| hypothetical protein NEUTE1DRAFT_149626 [Neurospora tetrasperma
FGSC 2508]
Length = 491
Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 53/78 (67%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++QG
Sbjct: 270 NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQG 329
Query: 121 TAIGKQTVRLSWGHNPGN 138
IG VRLSWG + N
Sbjct: 330 YPIGNSRVRLSWGRSQNN 347
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETF---SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE ++ RA++EM G
Sbjct: 154 SLFQSRFPSCKSAKIMTDAMTGQSRGYGFVRFSDEGDQQRALVEMQG 200
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 6 VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------- 56
+ ++ ++L ET + KV D N+G+ GY F+ F +A+ +NG+
Sbjct: 59 IKNVFTTVLGETV-QVKVIRDRNSGNA-GYCFIEFATPEAAQKAL-NLNGTPVPNSNRAF 115
Query: 57 --------------DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV----- 96
D + +IFVG L V++ L LF S F S KI
Sbjct: 116 KLNWASGGGLIDRRDDRGPEYSIFVGDLGPEVNEFVLVSLFQSRFPSCKSAKIMTDAMTG 175
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G GFV+F++ D + AL ++QG G + +R+S G H H
Sbjct: 176 QSRGYGFVRFSDEGDQQRALVEMQGVYCGNRPMRISTATPKTRTHQYGAHAPH 228
>gi|85115744|ref|XP_964924.1| hypothetical protein NCU00768 [Neurospora crassa OR74A]
gi|28926722|gb|EAA35688.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|38636412|emb|CAE81949.1| related to polyadenylate-binding protein [Neurospora crassa]
Length = 491
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 53/78 (67%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++QG
Sbjct: 270 NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQG 329
Query: 121 TAIGKQTVRLSWGHNPGN 138
IG VRLSWG + N
Sbjct: 330 YPIGNSRVRLSWGRSQNN 347
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETF---SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE ++ RA++EM G
Sbjct: 154 SLFQSRFPSCKSAKIMTDAMTGQSRGYGFVRFSDEGDQQRALVEMQG 200
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 6 VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------- 56
+ ++ ++L ET + KV D N+G+ GY F+ F E ++ + +NG+
Sbjct: 59 IKNVFTTVLGETV-QVKVIRDRNSGNA-GYCFIEFATP-EAAQKALNLNGTPVPNSNRAF 115
Query: 57 --------------DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV----- 96
D + +IFVG L V++ L LF S F S KI
Sbjct: 116 KLNWASGGGLIDRRDDRGPEYSIFVGDLGPEVNEFVLVSLFQSRFPSCKSAKIMTDAMTG 175
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G GFV+F++ D + AL ++QG G + +R+S G H H
Sbjct: 176 QSRGYGFVRFSDEGDQQRALVEMQGVYCGNRPMRISTATPKTRTHQYGAHAPH 228
>gi|406602666|emb|CCH45778.1| Nucleolysin TIA-1 isoform [Wickerhamomyces ciferrii]
Length = 485
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 43/83 (51%), Positives = 57/83 (68%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG+I VKIPVGKGCGFVQ+ R AE+A+ K+QG
Sbjct: 292 NNTTVFIGGLSSIVTEDELRLYFQPFGDITYVKIPVGKGCGFVQYVTRSSAELAISKMQG 351
Query: 121 TAIGKQTVRLSWGHNPGNKQWRG 143
IG +RLSWG + N + +G
Sbjct: 352 YPIGNSRIRLSWGRSNSNPKPQG 374
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 7/56 (12%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
D++++IL E F S K+ IDS TG +KGYGFVRF +E E+ RA++EM G+
Sbjct: 157 DVSDTILYEYFGSKYPSVSGTKIMIDSLTGGSKGYGFVRFINELEQKRALVEMQGA 212
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
N +IFVG L +VSD L E F S + + KI + KG GFV+F N + +
Sbjct: 145 NEVSIFVGDLAPDVSDTILYEYFGSKYPSVSGTKIMIDSLTGGSKGYGFVRFINELEQKR 204
Query: 114 ALQKLQGTAIGKQTVRLS 131
AL ++QG + + +R+S
Sbjct: 205 ALVEMQGAILNGRPIRVS 222
>gi|429854847|gb|ELA29832.1| mRNA binding post-transcriptional regulator, partial
[Colletotrichum gloeosporioides Nara gc5]
Length = 366
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FGEI V+IP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 286 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVQIPPGKGCGFVQFVHRHAAEMAINQMQ 345
Query: 120 GTAIGKQTVRLSWG 133
G IG VRLSWG
Sbjct: 346 GYPIGNSRVRLSWG 359
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ +G ++GYGFVRF DE ++ RA++EM G
Sbjct: 168 SLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFTDEQDQQRALVEMQG 214
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D +G+ GY FV F + S+A +++NG+ D
Sbjct: 88 KVIRDKTSGNA-GYCFVEFTSSDAASKA-LQLNGTPVPNSNRAFKLNWASGGGINDRRDD 145
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F + +D
Sbjct: 146 RGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFTDEQDQ 205
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 206 QRALVEMQGVYCGNRPMRIS 225
>gi|402077003|gb|EJT72352.1| tRNA selenocysteine-associated protein 1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 423
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 35 YGFVRFGDE--NERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YGF + N + AM MN NN T+FVG L V++ +LR F FG+I V
Sbjct: 250 YGFNQPAPPAANNFNAAMQPMN-QFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYV 308
Query: 93 KIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
KIP GKGCGFVQF +R AE+A+ ++QG IG VRLSWG + N
Sbjct: 309 KIPPGKGCGFVQFVHRHAAEMAINQMQGYPIGNSRVRLSWGRSQNN 354
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE ++ RA++EM G
Sbjct: 154 SLFQARFPSCKSAKIMTDAMTGQSRGYGFVRFTDEGDQQRALLEMQG 200
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 32/140 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV D +G+ GY FV F ++A +++NGS D
Sbjct: 74 KVIRDRQSGNA-GYCFVEFNSAEAANKA-LQLNGSPVPNSQRVFKLNWASGGGLVDRRDE 131
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L V++ L LF + F S KI +G GFV+F + D
Sbjct: 132 RGPEFSIFVGDLGPEVNEFVLVSLFQARFPSCKSAKIMTDAMTGQSRGYGFVRFTDEGDQ 191
Query: 112 EVALQKLQGTAIGKQTVRLS 131
+ AL ++QG G + +R+S
Sbjct: 192 QRALLEMQGVYCGNRPMRIS 211
>gi|336275731|ref|XP_003352619.1| hypothetical protein SMAC_01453 [Sordaria macrospora k-hell]
gi|380094509|emb|CCC07889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 517
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 53/78 (67%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF +R AE+A+ ++QG
Sbjct: 270 NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQG 329
Query: 121 TAIGKQTVRLSWGHNPGN 138
IG VRLSWG + N
Sbjct: 330 YPIGNSRVRLSWGRSQNN 347
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETF---SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE ++ RA++EM G
Sbjct: 154 SLFQSRFPSCKSAKIMTDAMTGQSRGYGFVRFSDEGDQQRALVEMQG 200
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 6 VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------- 56
+ ++ ++L E + KV D N+G+ GY F+ F E ++ + +NG+
Sbjct: 59 IKNVFTTVLGENV-QVKVIRDRNSGNA-GYCFIEFASA-EAAQKALNLNGTPVPNSNRAF 115
Query: 57 --------------DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV----- 96
D + +IFVG L V++ L LF S F S KI
Sbjct: 116 KLNWASGGGLIDRRDDRGPEYSIFVGDLGPEVNEFVLVSLFQSRFPSCKSAKIMTDAMTG 175
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+G GFV+F++ D + AL ++QG G + +R+S G H H
Sbjct: 176 QSRGYGFVRFSDEGDQQRALVEMQGVYCGNRPMRISTATPKTRTHQYGAHAPH 228
>gi|389643224|ref|XP_003719244.1| tRNA selenocysteine-associated protein 1 [Magnaporthe oryzae 70-15]
gi|351639013|gb|EHA46877.1| tRNA selenocysteine-associated protein 1 [Magnaporthe oryzae 70-15]
gi|440462667|gb|ELQ32668.1| tRNA selenocysteine-associated protein 1 [Magnaporthe oryzae Y34]
gi|440489843|gb|ELQ69456.1| tRNA selenocysteine-associated protein 1 [Magnaporthe oryzae P131]
Length = 415
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L V++ +LR F FG+I VKIP GKGCGFVQF +R AE+A+ ++Q
Sbjct: 281 PNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 340
Query: 120 GTAIGKQTVRLSWGHN 135
G IG VRLSWG +
Sbjct: 341 GYPIGNSRVRLSWGRS 356
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 12 SILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F AK+ D+ TG ++GYGFVRF DE+++ RA++EM G
Sbjct: 158 SLFQARFPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQG 204
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 33/156 (21%)
Query: 6 VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------- 56
+ I +++ ET + KV D +G+ GY FV F ++A + +NGS
Sbjct: 63 IKQIWSTVCGETVN-VKVIRDRQSGNA-GYCFVEFPSSEAATKA-LGLNGSPVPNSQRVF 119
Query: 57 --------------DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV----- 96
D + +IFVG L V++ L LF + F S KI
Sbjct: 120 KLNWASGGGLVDRRDERGPEYSIFVGDLGPEVNEFVLVSLFQARFPSCKSAKIMTDAMTG 179
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
+G GFV+F + D + AL ++QG G + +R+S
Sbjct: 180 QSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRIS 215
>gi|45184976|ref|NP_982694.1| AAR151Wp [Ashbya gossypii ATCC 10895]
gi|44980597|gb|AAS50518.1| AAR151Wp [Ashbya gossypii ATCC 10895]
Length = 481
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 51/72 (70%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+F+G L + +S+ L LF FG ILSVK+P G+GCGFV+F NR DAE A+Q +QG
Sbjct: 325 NTTVFIGGLSNMISEGQLHALFMPFGNILSVKVPPGRGCGFVRFENRMDAEAAIQGMQGF 384
Query: 122 AIGKQTVRLSWG 133
+G +RLSWG
Sbjct: 385 IVGGNAIRLSWG 396
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRF DE ER RA+ EMNG
Sbjct: 180 SLFQTKFKSVKTVRVMTDPITGASRCFGFVRFADEKERRRALAEMNG 226
>gi|374105894|gb|AEY94805.1| FAAR151Wp [Ashbya gossypii FDAG1]
Length = 475
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 51/72 (70%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+F+G L + +S+ L LF FG ILSVK+P G+GCGFV+F NR DAE A+Q +QG
Sbjct: 325 NTTVFIGGLSNMISEGQLHALFMPFGNILSVKVPPGRGCGFVRFENRMDAEAAIQGMQGF 384
Query: 122 AIGKQTVRLSWG 133
+G +RLSWG
Sbjct: 385 IVGGNAIRLSWG 396
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRF DE ER RA+ EMNG
Sbjct: 180 SLFQTKFKSVKTVRVMTDPITGASRCFGFVRFADEKERRRALAEMNG 226
>gi|363755816|ref|XP_003648124.1| hypothetical protein Ecym_8010 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891324|gb|AET41307.1| Hypothetical protein Ecym_8010 [Eremothecium cymbalariae
DBVPG#7215]
Length = 602
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 55/75 (73%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++++LR F FG+I+ VKIPVGKGCGFVQ+ +R AE A+ K+QG
Sbjct: 284 NNTTVFIGGLSSLVTEEELRAYFQPFGQIVYVKIPVGKGCGFVQYVDRSSAENAIAKMQG 343
Query: 121 TAIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 344 FPIGNSRIRLSWGRS 358
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D TG +KGYGFV+FG+E E+ R+++EM G
Sbjct: 172 AKIVFDQVTGVSKGYGFVKFGNEAEQQRSLVEMQG 206
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 64 TIFVGALDSNVSDKDLRELF-SHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
+IFVG L NVS+ L ELF S + L+ KI V KG GFV+F N + + +L
Sbjct: 143 SIFVGDLAPNVSESQLFELFISRYSSTLNAKIVFDQVTGVSKGYGFVKFGNEAEQQRSLV 202
Query: 117 KLQGTAIGKQTVRLS 131
++QG + + +R+S
Sbjct: 203 EMQGVFLNGRAIRVS 217
>gi|384487643|gb|EIE79823.1| hypothetical protein RO3G_04528 [Rhizopus delemar RA 99-880]
Length = 162
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%)
Query: 30 GHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
G+ G +R + R N+ T+F+G L + + + +LR F+ FG+I
Sbjct: 3 GYVIGSRPIRVSTATPKQRTSSNKQSFTSSINSTTVFIGGLSTPIKEDELRHYFAPFGDI 62
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+ VKIP GKGCGFVQ+ R AE+A+Q++ G IG +RLSWG
Sbjct: 63 IYVKIPQGKGCGFVQYTTRSSAELAIQQMNGYQIGTSRIRLSWG 106
>gi|384495849|gb|EIE86340.1| hypothetical protein RO3G_11051 [Rhizopus delemar RA 99-880]
Length = 1099
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 31/163 (19%)
Query: 7 SDITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--- 56
+D+ ++IL TF + AKV +D TG +KG+GFV+F DE E+ R++ EM G+
Sbjct: 104 ADVDDNILLTTFQSRYKSAASAKVMVDPATGFSKGFGFVKFFDEIEQKRSLEEMQGAYVG 163
Query: 57 ---------------------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
G T+FVG L++ +++++LR F FG I++VKI
Sbjct: 164 SSRIRVSVARPKAKIETGPVVSGPEEITTVFVGGLNNTITEEELRAYFGTFGNIVAVKII 223
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
K F+Q+ + AE A+ +L G+ +G +RLS+G N
Sbjct: 224 PLKNIAFIQYEKKSSAEQAISELNGSHLGGAKLRLSFGRTQLN 266
>gi|50288915|ref|XP_446887.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526196|emb|CAG59820.1| unnamed protein product [Candida glabrata]
Length = 555
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 48/74 (64%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L V++ +LR F FG I+ VKIP GKGCGFVQ+ R AE A+ K+QG
Sbjct: 325 NNTTVFVGGLSPLVTEDELRSYFEPFGTIIYVKIPAGKGCGFVQYVERSSAETAITKMQG 384
Query: 121 TAIGKQTVRLSWGH 134
I VRLSWG
Sbjct: 385 FPIANSRVRLSWGR 398
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AKV D TG +KGYGFV+F ++ RA++EM G
Sbjct: 220 AKVMYDQLTGISKGYGFVKFKSSMDQQRALVEMQG 254
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFANRKDA 111
+ N +IFVG L +V++ L +LF + + + K+ + KG GFV+F + D
Sbjct: 186 QQTNNSIFVGDLAPSVTEAQLFDLFINKYPSTVHAKVMYDQLTGISKGYGFVKFKSSMDQ 245
Query: 112 EVALQKLQGTAIGKQTVRL 130
+ AL ++QG + + +++
Sbjct: 246 QRALVEMQGCFLNGRAIKI 264
>gi|401625439|gb|EJS43448.1| nam8p [Saccharomyces arboricola H-6]
Length = 527
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 50/73 (68%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A+ +QG
Sbjct: 315 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKGCGFVQYVDRLSAEAAISGMQG 374
Query: 121 TAIGKQTVRLSWG 133
I VRLSWG
Sbjct: 375 FPIANSRVRLSWG 387
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF SH + + KG GFV+F N + +
Sbjct: 165 NNYSIFVGDLAPNVTESQLFELFINRYASASHAKIVHDQVTGMSKGYGFVKFNNADEQHL 224
Query: 114 ALQKLQGTAIGKQTVRL 130
AL ++QG + + +++
Sbjct: 225 ALSEMQGVFLNGRAIKV 241
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 6 VSDITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 175 APNVTESQLFELFINRYASASHAKIVHDQVTGMSKGYGFVKFNNADEQHLALSEMQG 231
>gi|50311447|ref|XP_455748.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644884|emb|CAG98456.1| KLLA0F14861p [Kluyveromyces lactis]
Length = 589
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L + +++ +LR F FG+I+ VKIPVGKGCGFVQ+ +R AE A+ K+QG
Sbjct: 314 NNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISKMQG 373
Query: 121 TAIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 374 FPIGNSRIRLSWGRS 388
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 29/148 (19%)
Query: 12 SILQETFSRAKVTIDSNTGHT-----KGYGFVRFGDENERSRAMIE-------------- 52
S+L E + K+ SN + GY FV F ++ S A+++
Sbjct: 77 SMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAASNALMKSGLRVPMDSNYALK 136
Query: 53 ---MNGSDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI------PVGKGCGF 102
+ + + T+FVG L NV++ L ELF S + L+ KI V KG GF
Sbjct: 137 LNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGF 196
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRL 130
V+F N + + AL ++QGT + + +R+
Sbjct: 197 VKFVNEMEQQRALVEMQGTFLNGRAIRV 224
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSN 73
AK+ D TG +KGYGFV+F +E E+ RA++EM G+ N I VG N
Sbjct: 180 AKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGT--FLNGRAIRVGTTSKN 230
>gi|365760349|gb|EHN02076.1| Nam8p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 513
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 50/73 (68%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A+ +QG
Sbjct: 303 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKGCGFVQYVDRLSAEAAIAGMQG 362
Query: 121 TAIGKQTVRLSWG 133
I VRLSWG
Sbjct: 363 FPIANSRVRLSWG 375
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Query: 53 MNGSDGKSNNA-TIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQ 104
+NG++ KS N+ +IFVG L NV++ L LF SH + + KG GFV+
Sbjct: 141 INGANMKSGNSYSIFVGDLAPNVTESQLFGLFINRYASASHAKIVHDQVTGMSKGYGFVK 200
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN 147
F N + ++AL ++QG + + +++ G G +Q + H+N
Sbjct: 201 FTNAGEEQLALSEMQGVFLNGRAIKV--GPTSGQQQ-QNVHVN 240
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S AK+ D TG +KGYGFV+F + E A+ EM G
Sbjct: 180 SHAKIVHDQVTGMSKGYGFVKFTNAGEEQLALSEMQG 216
>gi|254579785|ref|XP_002495878.1| ZYRO0C05060p [Zygosaccharomyces rouxii]
gi|238938769|emb|CAR26945.1| ZYRO0C05060p [Zygosaccharomyces rouxii]
Length = 716
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 52/75 (69%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L +++ L+ LFS FG IL+VKIP GK CGFV+F R DAE A+Q +QG
Sbjct: 419 NNTTVFIGGLTPKINENQLQTLFSPFGNILTVKIPQGKNCGFVKFEKRIDAEAAIQGMQG 478
Query: 121 TAIGKQTVRLSWGHN 135
+G +RLSWG N
Sbjct: 479 FVVGGCPIRLSWGRN 493
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q+ F K V D TG ++ +GFVRFG+E ER RA++EMNG
Sbjct: 240 SLFQQKFKSVKTVRVMTDPITGASRCFGFVRFGNEEERRRALVEMNG 286
Score = 35.4 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSH-FGEILSVKI---PV---GKGCGFVQFANRKDAEVALQ 116
++FVG L ++ DL LF F + +V++ P+ + GFV+F N ++ AL
Sbjct: 223 SLFVGDLSPTATEADLLSLFQQKFKSVKTVRVMTDPITGASRCFGFVRFGNEEERRRALV 282
Query: 117 KLQGTAIGKQTVRLSWGHNPGNKQWR 142
++ G + +R+++ N W+
Sbjct: 283 EMNGVWCQGRCLRVAYATPRNNMMWQ 308
>gi|330935675|ref|XP_003305076.1| hypothetical protein PTT_17823 [Pyrenophora teres f. teres 0-1]
gi|311318022|gb|EFQ86789.1| hypothetical protein PTT_17823 [Pyrenophora teres f. teres 0-1]
Length = 471
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 52/78 (66%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L V++ +LR F FGEI VKIP GKGCGFVQF R AE+A+ ++QG
Sbjct: 287 NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQG 346
Query: 121 TAIGKQTVRLSWGHNPGN 138
IG VRLSWG + N
Sbjct: 347 YPIGNSRVRLSWGRSQNN 364
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 31/147 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA------------------ 63
K+ D +G GY FV F + ++A+ +NGS ++N
Sbjct: 95 KMIRDKFSGSNAGYCFVDFASPDAAAKAL-GLNGSLIPNSNRPFKLNWASGGGLADRRQR 153
Query: 64 ----TIFVGALDSNVSDKDLRELFSH-FGEILSVKI---PVG---KGCGFVQFANRKDAE 112
++FVG L V++ L +LF + + S KI P+ +G GFV+FA+ D +
Sbjct: 154 GPEFSVFVGDLGPEVTEFVLVQLFQNKYASTKSAKIMSDPISGMSRGYGFVRFASEDDQQ 213
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNK 139
AL ++QG G + +R+S P NK
Sbjct: 214 KALTEMQGVYCGNRPMRISTA-TPKNK 239
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ D +G ++GYGFVRF E+++ +A+ EM G
Sbjct: 187 AKIMSDPISGMSRGYGFVRFASEDDQQKALTEMQG 221
>gi|151944033|gb|EDN62326.1| RNA-binding protein [Saccharomyces cerevisiae YJM789]
Length = 523
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A+ +QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKGCGFVQYVDRLSAEAAIAGMQG 370
Query: 121 TAIGKQTVRLSWGH 134
I VRLSWG
Sbjct: 371 FPIANSRVRLSWGR 384
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L +NV++ L ELF SH + + KG GFV+F N + ++
Sbjct: 161 NNCSIFVGDLAANVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
AL ++QG + + +++ G G +Q
Sbjct: 221 ALSEMQGVFLNGRAIKV--GPTSGQQQ 245
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 6 VSDITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+++T S L E F S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 171 AANVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227
>gi|259146840|emb|CAY80096.1| Nam8p [Saccharomyces cerevisiae EC1118]
gi|323348251|gb|EGA82500.1| Nam8p [Saccharomyces cerevisiae Lalvin QA23]
Length = 523
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A+ +QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKGCGFVQYVDRLSAEAAIAGMQG 370
Query: 121 TAIGKQTVRLSWGH 134
I VRLSWG
Sbjct: 371 FPIANSRVRLSWGR 384
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF SH + + KG GFV+F N + ++
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
AL ++QG + + +++ G G +Q
Sbjct: 221 ALSEMQGVFLNGRAIKV--GPTSGQQQ 245
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 173 NVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227
>gi|365765198|gb|EHN06710.1| Nam8p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 523
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A+ +QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKGCGFVQYVDRLSAEAAIAGMQG 370
Query: 121 TAIGKQTVRLSWGH 134
I VRLSWG
Sbjct: 371 FPIANSRVRLSWGR 384
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF SH + + KG GFV+F N + ++
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 114 ALQKLQGTAIGKQTVRL 130
AL ++QG + + +++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 173 NVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227
>gi|323304584|gb|EGA58347.1| Nam8p [Saccharomyces cerevisiae FostersB]
Length = 523
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A+ +QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKGCGFVQYVDRLSAEAAIAGMQG 370
Query: 121 TAIGKQTVRLSWGH 134
I VRLSWG
Sbjct: 371 FPIANSRVRLSWGR 384
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF SH + + KG GFV+F N + ++
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 114 ALQKLQGTAIGKQTVRL 130
AL ++QG + + +++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 173 NVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227
>gi|349578638|dbj|GAA23803.1| K7_Nam8p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298893|gb|EIW09988.1| Nam8p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 523
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A+ +QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKGCGFVQYVDRLSAEAAIAGMQG 370
Query: 121 TAIGKQTVRLSWGH 134
I VRLSWG
Sbjct: 371 FPIANSRVRLSWGR 384
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF SH + + KG GFV+F N + ++
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 114 ALQKLQGTAIGKQTVRL 130
AL ++QG + + +++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 173 NVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227
>gi|256269427|gb|EEU04722.1| Nam8p [Saccharomyces cerevisiae JAY291]
Length = 523
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A+ +QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKGCGFVQYVDRLSAEAAIAGMQG 370
Query: 121 TAIGKQTVRLSWGH 134
I VRLSWG
Sbjct: 371 FPIANSRVRLSWGR 384
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF SH + + KG GFV+F N + ++
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
AL ++QG + + +++ G G +Q
Sbjct: 221 ALSEMQGVFLNGRAIKV--GPTSGQQQ 245
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 173 NVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227
>gi|409050510|gb|EKM59987.1| hypothetical protein PHACADRAFT_250820 [Phanerochaete carnosa
HHB-10118-sp]
Length = 643
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 52/74 (70%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +S++ LR F+ FGEI VK+PVGK CGFVQF + DAE A++K+QG
Sbjct: 308 NTTVFVGGLSPLISEETLRTFFAPFGEIHYVKVPVGKHCGFVQFVRKPDAERAIEKMQGF 367
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 368 PIGGSRIRLSWGRS 381
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 29/35 (82%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRFG+E ++ RA++EM+G
Sbjct: 89 AKIMLDPVTGVSRGYGFVRFGEEADQQRALVEMHG 123
>gi|323308830|gb|EGA62067.1| Nam8p [Saccharomyces cerevisiae FostersO]
Length = 466
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 50/73 (68%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGKGCGFVQ+ +R AE A+ +QG
Sbjct: 254 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKGCGFVQYVDRLSAEAAIAGMQG 313
Query: 121 TAIGKQTVRLSWG 133
I VRLSWG
Sbjct: 314 FPIANSRVRLSWG 326
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF SH + + KG GFV+F N + ++
Sbjct: 104 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 163
Query: 114 ALQKLQGTAIGKQTVRL 130
AL ++QG + + +++
Sbjct: 164 ALSEMQGVFLNGRAIKV 180
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 116 NVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 170
>gi|426192598|gb|EKV42534.1| hypothetical protein AGABI2DRAFT_229063, partial [Agaricus bisporus
var. bisporus H97]
Length = 396
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 54 NGSDGKSN---NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKD 110
NG SN N T+FVG L +S++ LR F+ FG+I VK+PVGK CGFVQF + D
Sbjct: 248 NGEQLTSNDPYNTTVFVGGLSPLISEETLRTFFAPFGDIHYVKVPVGKHCGFVQFVRKAD 307
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHN 135
AE A++K+QG IG +RLSWG +
Sbjct: 308 AERAIEKMQGFPIGGSRIRLSWGRS 332
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRF DE ++ RA+IEM+G
Sbjct: 142 AKIMLDPLTGVSRGYGFVRFSDEADQQRALIEMHG 176
>gi|328769877|gb|EGF79920.1| hypothetical protein BATDEDRAFT_19794 [Batrachochytrium
dendrobatidis JAM81]
Length = 470
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAE 112
+ G+D N+TIF+GAL + +++ DLR+ F FGEI+ KIP GK CGFVQF +R+ AE
Sbjct: 231 LGGND--PTNSTIFIGALPATMTNDDLRKHFLPFGEIVYTKIPFGKRCGFVQFIHRQSAE 288
Query: 113 VALQKLQGTAIGKQTVRLSWGHN 135
+A+Q++ G IG +RLSWG +
Sbjct: 289 MAIQEMDGKVIGGSALRLSWGRS 311
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 28/138 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DG-----KSNNA----------- 63
K+ D +TG GY FV F + ++ + +NG+ G K N A
Sbjct: 42 KMIKDKSTGSLAGYCFVEFSSSDVAAKLLELVNGTLIPGTHCFFKLNWAFGGGLSPLYVL 101
Query: 64 ---TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDAEV 113
+IFVG L ++D L ++F + + S ++ + KG GFV+F + D +
Sbjct: 102 PEFSIFVGDLAHEINDILLMQVFHERYPSVKSARVVIDPTTGSPKGYGFVRFGSEADQQQ 161
Query: 114 ALQKLQGTAIGKQTVRLS 131
+L LQG IG + VR+S
Sbjct: 162 SLVDLQGQMIGSRPVRVS 179
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
A+V ID TG KGYGFVRFG E ++ ++++++ G
Sbjct: 134 ARVVIDPTTGSPKGYGFVRFGSEADQQQSLVDLQG 168
>gi|388580130|gb|EIM20447.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 681
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 54/79 (68%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
+N T+FVG L S +S+ LR F+ FG I VKIP GKGCGFVQF + DAE A++++QG
Sbjct: 310 HNTTVFVGGLSSLISEDTLRVFFAPFGAITYVKIPPGKGCGFVQFVRKADAERAIERMQG 369
Query: 121 TAIGKQTVRLSWGHNPGNK 139
IG +RLSWG + +K
Sbjct: 370 FPIGGGRIRLSWGRSQSDK 388
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
T + K+ D+ TG ++ +GFVRF +E+E RA+ EM G
Sbjct: 164 TCTNVKIMTDNATGSSRCFGFVRFSNEDEMIRALDEMQG 202
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSH-------FGEILSVKIPVGKGCG----- 101
N + N ++FVG L + ++ DL F H F +VKI G
Sbjct: 123 NSPEKLVNEFSVFVGDLSPDATEHDLMRAFQHPPNLSNPFTTCTNVKIMTDNATGSSRCF 182
Query: 102 -FVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
FV+F+N + AL ++QG + + +RLS
Sbjct: 183 GFVRFSNEDEMIRALDEMQGIPVAGRPIRLS 213
>gi|443926790|gb|ELU45354.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 886
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
Query: 41 GDENERSRAMIE-MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG 99
G E +RA++ +N +D N T+FVG L ++++ LR F+ FGEI VKIP GKG
Sbjct: 483 GARLESARALLGVLNSAD--PYNTTVFVGGLSGLIAEETLRGFFAPFGEIHYVKIPPGKG 540
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
CGFVQF + DAE A++++QG IG +RLSWG
Sbjct: 541 CGFVQFVRKADAERAIERMQGYPIGGGKIRLSWG 574
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
SI+ E S + TG +KGYGFVRF DE ++ RA+IEM G
Sbjct: 311 SIMME-ISSLSPQVSPETGISKGYGFVRFTDEADQQRALIEMQG 353
>gi|385302315|gb|EIF46452.1| mrna binding post-transcriptional regulator [Dekkera bruxellensis
AWRI1499]
Length = 207
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG ++S+VS+ LR LF FG+I++V +P GKGCGFV+F + A+ A+ ++Q
Sbjct: 61 PNNTTVFVGGINSSVSEDALRSLFDPFGDIVNVCVPPGKGCGFVRFTTHESAQQAVNEMQ 120
Query: 120 GTAIGKQTVRLSWGHNPGNKQWR 142
G +G +RL WG + +QWR
Sbjct: 121 GFVLGGSRIRLRWGRSGQRRQWR 143
>gi|324507975|gb|ADY43373.1| Nucleolysin TIAR [Ascaris suum]
Length = 290
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 44/191 (23%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
++ N L++ F S AKV DS T +KGYGFV + E RA+ +MNG
Sbjct: 40 PEVDNKALKDAFAPFGEVSDAKVIRDSTTLKSKGYGFVSYPKREEAERAIEQMNGQWLGR 99
Query: 56 --------------SDGK----------------SNNATIFVGALDSNVSDKDLRELFSH 85
+DG+ +N ++++G ++ +V+D+DLR F
Sbjct: 100 RTIRTNWATRKPTGTDGQQSKPELSYDDVFNQTGPDNTSVYIGNVNQSVNDEDLRAAFDK 159
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP---GNKQWR 142
FG I+ V+I +G FV+F + A A+ K+ GT IG QTV+ SWG P N+Q
Sbjct: 160 FGRIVEVRIFKTQGFAFVRFDKKDSACNAIVKMNGTEIGGQTVKCSWGRTPEGHNNQQNA 219
Query: 143 GDHINHWNGAH 153
+ N GA+
Sbjct: 220 AANYNQMQGAY 230
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
+F+G L V +K L++ F+ FGE+ K+ KG GFV + R++AE A++++
Sbjct: 33 VFIGDLSPEVDNKALKDAFAPFGEVSDAKVIRDSTTLKSKGYGFVSYPKREEAERAIEQM 92
Query: 119 QGTAIGKQTVRLSWG 133
G +G++T+R +W
Sbjct: 93 NGQWLGRRTIRTNWA 107
>gi|320165313|gb|EFW42212.1| nucleic acid binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 1042
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 54/76 (71%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
S N T++VG L +VS ++L+ +FS FG+I+ V+IP GK CGFVQFA +AE A+ L
Sbjct: 581 SINTTVYVGGLSPHVSAEELKAIFSLFGDIVGVRIPQGKACGFVQFAQHGNAEQAIAHLN 640
Query: 120 GTAIGKQTVRLSWGHN 135
G IG Q +RLSWGH+
Sbjct: 641 GQYIGGQPIRLSWGHH 656
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG 58
+D+T+ L F + AKV +D G KG+GFVRF D N+ RA++EMNG+ G
Sbjct: 105 ADVTDFQLHSFFKQLYASCKTAKVVVD-QAGTPKGFGFVRFTDSNDCLRALLEMNGAVG 162
Score = 42.4 bits (98), Expect = 0.073, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 28/138 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------DGKSNNA 63
K+ + TG GY FV FG+ + R + +NG+ G + N
Sbjct: 34 KIIKNRLTGGPAGYCFVDFGNSDRAVRVLHALNGAQIPGLDPSRRFRLNLALYSGATRNE 93
Query: 64 ---TIFVGALDSNVSDKDLRELFSH-FGEILSVKIPVG-----KGCGFVQFANRKDAEVA 114
++FVG L ++V+D L F + + K+ V KG GFV+F + D A
Sbjct: 94 PEYSLFVGDLTADVTDFQLHSFFKQLYASCKTAKVVVDQAGTPKGFGFVRFTDSNDCLRA 153
Query: 115 LQKLQG-TAIGKQTVRLS 131
L ++ G G + +R+S
Sbjct: 154 LLEMNGAVGCGGKPMRVS 171
>gi|392568189|gb|EIW61363.1| hypothetical protein TRAVEDRAFT_26986 [Trametes versicolor
FP-101664 SS1]
Length = 950
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 51/74 (68%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +++ LR F+ FGEI VK+PVGK CGFVQF + DAE A++K+QG
Sbjct: 619 NTTVFVGGLSPLINEDTLRTFFAPFGEIHYVKVPVGKHCGFVQFVRKPDAERAIEKMQGF 678
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 679 PIGGSRIRLSWGRS 692
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 29/35 (82%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRF DE+++ RA+IEM+G
Sbjct: 395 AKIMLDPVTGVSRGYGFVRFTDESDQQRALIEMHG 429
>gi|299748443|ref|XP_001839126.2| RNA-binding protein Csx1 [Coprinopsis cinerea okayama7#130]
gi|298407975|gb|EAU82695.2| RNA-binding protein Csx1 [Coprinopsis cinerea okayama7#130]
Length = 808
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +S++ LR F+ FG+I VK+PVGK CGFVQF + DAE A++K+QG
Sbjct: 495 NTTVFVGGLSPLISEETLRTFFAPFGDIHYVKVPVGKHCGFVQFVRKADAERAIEKMQGF 554
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 555 PIGGSKIRLSWGRS 568
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRF DE ++ RA+IEM+G
Sbjct: 259 AKIMLDPVTGVSRGYGFVRFTDEADQQRALIEMHG 293
>gi|395329881|gb|EJF62266.1| hypothetical protein DICSQDRAFT_135856 [Dichomitus squalens
LYAD-421 SS1]
Length = 973
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +S+ LR F+ FGEI VK+PVGK CGFVQF + DAE A++K+QG
Sbjct: 627 NTTVFVGGLSPLISEDTLRTFFAPFGEIHYVKVPVGKHCGFVQFVRKPDAERAIEKMQGF 686
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 687 PIGGSRIRLSWGRS 700
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRF DE ++ RA+IEM+G
Sbjct: 395 AKIMLDPVTGVSRGYGFVRFTDEADQQRALIEMHG 429
>gi|213406019|ref|XP_002173781.1| RNA-binding post-transcriptional regulator csx1
[Schizosaccharomyces japonicus yFS275]
gi|212001828|gb|EEB07488.1| RNA-binding post-transcriptional regulator csx1
[Schizosaccharomyces japonicus yFS275]
Length = 680
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 51/74 (68%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L S ++KDL FS FG IL++KIP GKGCGFVQ+ + AE A+ +QG
Sbjct: 322 NTTVFVGGLFSGATEKDLFYHFSPFGNILNIKIPPGKGCGFVQYTEKAAAEKAITMMQGA 381
Query: 122 AIGKQTVRLSWGHN 135
+G +RL+WGHN
Sbjct: 382 LVGPSHIRLAWGHN 395
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+ AK+ ID TG ++ YGFVRF DE E+ RA+ EM G
Sbjct: 212 TSAKIIIDPVTGMSRKYGFVRFSDEREQQRALSEMQG 248
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGC---GFVQFAN 107
+D K N+ T+++G L+S + +++L++ GE + VK+ V +GC FVQF++
Sbjct: 81 ADHKPND-TLWMGDLESWMDAAFIQQLWASLGETVHVKLMRTKSSVSEGCVSYCFVQFSS 139
Query: 108 RKDAEVALQKLQGTAIGK--QTVRLSWGHNPG 137
+ AE AL + T I + +L+W G
Sbjct: 140 PQAAEYALLRYNNTIIPRTHSVFKLNWATGGG 171
>gi|389747119|gb|EIM88298.1| hypothetical protein STEHIDRAFT_95374 [Stereum hirsutum FP-91666
SS1]
Length = 932
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 52/74 (70%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +S++ LR F+ FGEI VK+PVGK CGFVQF + DAE A++K+QG
Sbjct: 564 NTTVFVGGLSPLISEETLRTFFAPFGEIHYVKVPVGKHCGFVQFVRKADAERAIEKMQGF 623
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 624 PIGGSRIRLSWGRS 637
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRF DE ++ RA+IEM+G
Sbjct: 345 AKIMLDPVTGVSRGYGFVRFTDEADQQRALIEMHG 379
>gi|365761964|gb|EHN03583.1| Ngr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 666
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 56/93 (60%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G+ N R+ + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 337 GNSNVRANEFLPSNTYNSDPTNTTVFVGGLVPKTAEFQLRSLFKPFGPILNVRIPNGKNC 396
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 397 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 429
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFG+E+ER RA+IEM+G
Sbjct: 209 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGNEDERRRALIEMSG 255
>gi|403416664|emb|CCM03364.1| predicted protein [Fibroporia radiculosa]
Length = 948
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +S++ LR F+ FG+I VK+PVGK CGFVQF + DAE A++K+QG
Sbjct: 613 NTTVFVGGLSPLISEETLRTFFAPFGDIHYVKVPVGKHCGFVQFVRKPDAERAIEKMQGF 672
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 673 PIGGSRIRLSWGRS 686
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRF DE ++ RA+IEM+G
Sbjct: 385 AKIMLDPVTGVSRGYGFVRFTDETDQQRALIEMHG 419
>gi|365987806|ref|XP_003670734.1| hypothetical protein NDAI_0F01720 [Naumovozyma dairenensis CBS 421]
gi|343769505|emb|CCD25491.1| hypothetical protein NDAI_0F01720 [Naumovozyma dairenensis CBS 421]
Length = 474
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 54/79 (68%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVA 114
G S N+TIFVG L ++VS+++L ELF FGEI+ VKIP+GK CGFV F R DA+ A
Sbjct: 300 GLGSNSKNSTIFVGGLSTDVSEQELNELFRPFGEIMDVKIPLGKKCGFVTFKRRIDAKAA 359
Query: 115 LQKLQGTAIGKQTVRLSWG 133
++ L G + +RLSWG
Sbjct: 360 IKGLHGFLVRGCPIRLSWG 378
>gi|323337302|gb|EGA78555.1| Nam8p [Saccharomyces cerevisiae Vin13]
Length = 523
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGK CGFVQ+ +R AE A+ +QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKXCGFVQYVDRLSAEAAIAGMQG 370
Query: 121 TAIGKQTVRLSWGH 134
I VRLSWG
Sbjct: 371 FPIANSRVRLSWGR 384
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF SH + + KG GFV+F N + ++
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 114 ALQKLQGTAIGKQTVRL 130
AL ++QG + + +++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 173 NVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227
>gi|302696241|ref|XP_003037799.1| hypothetical protein SCHCODRAFT_83732 [Schizophyllum commune H4-8]
gi|300111496|gb|EFJ02897.1| hypothetical protein SCHCODRAFT_83732 [Schizophyllum commune H4-8]
Length = 759
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 51/74 (68%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +S+ LR F+ FG+I VK+PVGK CGFVQF + DAE A++K+QG
Sbjct: 545 NTTVFVGGLSPLISEDTLRTFFAPFGDIHYVKVPVGKHCGFVQFVRKADAENAIEKMQGF 604
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 605 PIGGSRIRLSWGRS 618
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRF DE ++ RA+IEM+G
Sbjct: 331 AKIMLDPVTGVSRGYGFVRFTDEADQQRALIEMHG 365
>gi|6321878|ref|NP_011954.1| Nam8p [Saccharomyces cerevisiae S288c]
gi|730108|sp|Q00539.2|NAM8_YEAST RecName: Full=Protein NAM8
gi|487934|gb|AAB68928.1| Nam8p: Putative RNA binding proteins [Saccharomyces cerevisiae]
gi|520596|dbj|BAA02016.1| Mre2 protein [Saccharomyces cerevisiae]
gi|190405867|gb|EDV09134.1| RNA-binding protein [Saccharomyces cerevisiae RM11-1a]
gi|207344656|gb|EDZ71726.1| YHR086Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285809994|tpg|DAA06781.1| TPA: Nam8p [Saccharomyces cerevisiae S288c]
gi|323333247|gb|EGA74645.1| Nam8p [Saccharomyces cerevisiae AWRI796]
Length = 523
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGK CGFVQ+ +R AE A+ +QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQG 370
Query: 121 TAIGKQTVRLSWGH 134
I VRLSWG
Sbjct: 371 FPIANSRVRLSWGR 384
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF SH + + KG GFV+F N + ++
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 114 ALQKLQGTAIGKQTVRL 130
AL ++QG + + +++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 173 NVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227
>gi|4026|emb|CAA46011.1| NAM8 [Saccharomyces cerevisiae]
gi|228931|prf||1814447B NAM8 gene
Length = 523
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGK CGFVQ+ +R AE A+ +QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQG 370
Query: 121 TAIGKQTVRLSWGH 134
I VRLSWG
Sbjct: 371 FPIANSRVRLSWGR 384
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF SH + + KG V+F N + ++
Sbjct: 161 NNCSIFVGDLAPNVTESQLLELFINRYASTSHAKIVHDQVTGMSKGYVLVKFTNSDEQQL 220
Query: 114 ALQKLQGTAIGKQTVRL 130
AL ++QG + + +++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F S AK+ D TG +KGY V+F + +E+ A+ EM G
Sbjct: 173 NVTESQLLELFINRYASTSHAKIVHDQVTGMSKGYVLVKFTNSDEQQLALSEMQG 227
>gi|238600700|ref|XP_002395212.1| hypothetical protein MPER_04772 [Moniliophthora perniciosa FA553]
gi|215465560|gb|EEB96142.1| hypothetical protein MPER_04772 [Moniliophthora perniciosa FA553]
Length = 200
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +++ LR F+ FG+I VK+PVGK CGFVQF + DAE A++K+QG
Sbjct: 116 NTTVFVGGLSPLINEDTLRTFFAPFGDIHYVKVPVGKNCGFVQFVRKADAERAIEKMQGF 175
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 176 PIGGSRIRLSWGRS 189
>gi|393229322|gb|EJD36947.1| hypothetical protein AURDEDRAFT_188233 [Auricularia delicata
TFB-10046 SS5]
Length = 893
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 52/74 (70%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L V ++ LR F+ FGEI VK+PVGK CGFVQF ++ DAE A++K+QG
Sbjct: 407 NTTVFVGGLSPLVPEETLRTFFAPFGEIHYVKVPVGKHCGFVQFVHKADAERAIEKMQGF 466
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 467 PIGGSKIRLSWGRS 480
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG +KGYGFVRF D+ E+ RA+IEM+G
Sbjct: 187 AKIQLDPVTGLSKGYGFVRFTDQAEQQRALIEMHG 221
>gi|336386826|gb|EGO27972.1| hypothetical protein SERLADRAFT_414166 [Serpula lacrymans var.
lacrymans S7.9]
Length = 933
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +S++ LR F+ FG+I VK+PVGK CGFVQF + DAE A++K+QG
Sbjct: 580 NTTVFVGGLSPLISEETLRTFFAPFGDIHYVKVPVGKHCGFVQFVRKADAERAIEKMQGF 639
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 640 PIGGSRIRLSWGRS 653
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRF +E ++ RA+IEM+G
Sbjct: 341 AKIMLDPVTGVSRGYGFVRFTEEADQQRALIEMHG 375
>gi|392586871|gb|EIW76206.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 876
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +S++ LR F+ FG+I VK+P+GK CGFVQF + DAE A++K+QG
Sbjct: 577 NTTVFVGGLSPLISEETLRTFFAPFGDIHYVKVPIGKHCGFVQFVRKADAERAIEKMQGF 636
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 637 PIGGSRIRLSWGRS 650
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRF DE ++ RA++EM+G
Sbjct: 346 AKIMLDPVTGVSRGYGFVRFTDETDQQRALVEMHG 380
>gi|323349799|gb|EGA84014.1| Ngr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 593
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 337 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 396
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 397 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 429
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 209 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 255
>gi|323338729|gb|EGA79945.1| Ngr1p [Saccharomyces cerevisiae Vin13]
Length = 594
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 338 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 397
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
>gi|390601667|gb|EIN11061.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 877
Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 51/74 (68%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +S+ LR F+ FG+I VK+PVGK CGFVQF + DAE A++K+QG
Sbjct: 536 NTTVFVGGLSPLISEDTLRTFFAPFGDIHYVKVPVGKHCGFVQFVRKADAERAIEKMQGF 595
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 596 PIGGSRIRLSWGRS 609
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG +KGYGFVRF DE ++ RA++EM+G
Sbjct: 294 AKIMLDPATGVSKGYGFVRFTDEADQQRALVEMHG 328
>gi|146421272|ref|XP_001486586.1| hypothetical protein PGUG_02257 [Meyerozyma guilliermondii ATCC
6260]
Length = 681
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L S+V+++ L LF FG I +KIP GK CGFV++ NR+DAE A+ +QG
Sbjct: 326 NNTTVFVGGLSSDVNEQTLFTLFKQFGIIQQIKIPPGKNCGFVKYTNREDAEEAIASMQG 385
Query: 121 TAIGKQTVRLSWG 133
IG VRLSWG
Sbjct: 386 FIIGGNRVRLSWG 398
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 12 SILQETFSRA----KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+ Q++F + +V D TG + +GFVRF DE+ER RA++EMNG+
Sbjct: 187 AFFQKSFPNSIKTVRVMTDPVTGKLRCFGFVRFTDESERQRALVEMNGA 235
>gi|156843736|ref|XP_001644934.1| hypothetical protein Kpol_530p46 [Vanderwaltozyma polyspora DSM
70294]
gi|156115587|gb|EDO17076.1| hypothetical protein Kpol_530p46 [Vanderwaltozyma polyspora DSM
70294]
Length = 587
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 49/71 (69%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTA 122
+T+F+G L +++ +R LF FG I++VK+P GK CGFV+F NR DAE A+Q LQG
Sbjct: 380 STVFIGGLSPKINESQVRSLFKPFGNIVNVKLPPGKNCGFVKFENRIDAEAAIQGLQGFI 439
Query: 123 IGKQTVRLSWG 133
+ +RLSWG
Sbjct: 440 VAGNPIRLSWG 450
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q+ + K V D TG ++ +GF+RFGD++ER RA+ EMNG
Sbjct: 246 SLFQQQYRSVKTVRVMTDPITGASRCFGFIRFGDQDERKRALSEMNG 292
>gi|260940363|ref|XP_002614481.1| hypothetical protein CLUG_05259 [Clavispora lusitaniae ATCC 42720]
gi|238851667|gb|EEQ41131.1| hypothetical protein CLUG_05259 [Clavispora lusitaniae ATCC 42720]
Length = 651
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 34 GYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVK 93
GY GD+NE M SD +N T+FVG L S VS++ L LF FG I +K
Sbjct: 324 GYFPPMMGDKNEFGMNMAGHPYSD--PSNTTVFVGGLRSEVSEQTLFTLFKPFGTIQQIK 381
Query: 94 IPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
IP GK CGF++++ R++AE A+Q ++G IG VRL WG N +
Sbjct: 382 IPPGKNCGFLKYSTREEAEEAIQAMEGFIIGGNRVRLGWGRVSANNK 428
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 12 SILQETFSRA----KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
S Q++F + +V D +G ++ +GFVRF +E+ER RA+ EMNG+
Sbjct: 207 SFFQKSFPNSIRTVRVMTDPVSGKSRCFGFVRFTEESERQRALREMNGA 255
>gi|353238970|emb|CCA70899.1| related to polyadenylate-binding protein [Piriformospora indica DSM
11827]
Length = 944
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 43 ENERSRAMIEM---NGSD----GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
+N ++RA +E NG+D N T+FVG L +S++ LR F+ FG I VK+P
Sbjct: 375 DNPQARAQLETLLGNGNDPLVPSDPQNTTVFVGGLSPLISEETLRTFFAPFGAIHYVKVP 434
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136
GK CGFVQF + DAE A++ L G +I VRLSWG P
Sbjct: 435 PGKSCGFVQFVKKSDAERAIEALSGFSIAGSKVRLSWGRIP 475
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
AKV +DS TG +KGYGFVRF E ++ RA++EM G KS
Sbjct: 220 AKVMVDSVTGISKGYGFVRFTSEADQKRALLEMQGLYCKS 259
>gi|331220231|ref|XP_003322791.1| hypothetical protein PGTG_04328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301781|gb|EFP78372.1| hypothetical protein PGTG_04328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 897
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
+N T+FVG L + +S+ L+ F +FGEI VKIP KGCGFVQ+ R+DA+ A+ K+
Sbjct: 639 SNTTVFVGGLPACISEGTLKTFFQNFGEITYVKIPPNKGCGFVQYVRREDAQQAMLKMHD 698
Query: 121 TAI-GKQTVRLSWGHNPGNKQ 140
I GK +RLSWG + G+KQ
Sbjct: 699 FPIHGKSRIRLSWGRSLGDKQ 719
Score = 38.9 bits (89), Expect = 0.82, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT 64
AK+ D +TG ++GY F+RFG+E++ RA+ + G+S N T
Sbjct: 242 AKIMGDLSTGLSRGYAFIRFGEESDMHRAL-----ALGRSKNGT 280
>gi|336373915|gb|EGO02253.1| hypothetical protein SERLA73DRAFT_86524 [Serpula lacrymans var.
lacrymans S7.3]
Length = 611
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +S++ LR F+ FG+I VK+PVGK CGFVQF + DAE A++K+QG
Sbjct: 258 NTTVFVGGLSPLISEETLRTFFAPFGDIHYVKVPVGKHCGFVQFVRKADAERAIEKMQGF 317
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 318 PIGGSRIRLSWGRS 331
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 9/62 (14%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------SDGKSNNATIFVGALD 71
AK+ +D TG ++GYGFVRF +E ++ RA+IEM+G S NA I VG +
Sbjct: 143 AKIMLDPVTGVSRGYGFVRFTEEADQQRALIEMHGLYCLSRPTAQQYSSTNAAIKVGGVT 202
Query: 72 SN 73
+N
Sbjct: 203 TN 204
>gi|449549395|gb|EMD40360.1| hypothetical protein CERSUDRAFT_110955 [Ceriporiopsis subvermispora
B]
Length = 709
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 50/74 (67%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L +S+ LR F+ FG+I VK+P GK CGFVQF + DAE A++K+QG
Sbjct: 388 NTTVFVGGLSPLISEDTLRTFFAPFGDIHYVKVPAGKHCGFVQFVRKPDAERAIEKMQGF 447
Query: 122 AIGKQTVRLSWGHN 135
IG +RLSWG +
Sbjct: 448 PIGGSRIRLSWGRS 461
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRF DE ++ RA+IEM+G
Sbjct: 158 AKIMLDPVTGVSRGYGFVRFTDEADQQRALIEMHG 192
>gi|50292159|ref|XP_448512.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527824|emb|CAG61473.1| unnamed protein product [Candida glabrata]
Length = 802
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L V ++ LR++F FG ILS+KIP GK CGFV+F ++ DAE A+Q LQG
Sbjct: 466 NTTVFVGGLGPTVQEQQLRKIFQPFGNILSIKIPPGKNCGFVKFEHKIDAEAAIQGLQGF 525
Query: 122 AIGKQTVRLSWGHN 135
+ + +RLSWG N
Sbjct: 526 VLVENPIRLSWGRN 539
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFG+E ER RA+IEMNG
Sbjct: 252 SLFQTKFKSVKTVRVMTDPITGASRCFGFVRFGNEEERRRALIEMNG 298
>gi|190346145|gb|EDK38159.2| hypothetical protein PGUG_02257 [Meyerozyma guilliermondii ATCC
6260]
Length = 681
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L S+V+++ L LF FG I +KIP GK CGFV++ NR+DAE A+ +QG
Sbjct: 326 NNTTVFVGGLSSDVNEQTLFTLFKQFGIIQQIKIPPGKNCGFVKYTNREDAEEAIASMQG 385
Query: 121 TAIGKQTVRLSWG 133
IG VRLSWG
Sbjct: 386 FIIGGNRVRLSWG 398
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 12 SILQETFSRA----KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+ Q++F + +V D TG ++ +GFVRF DE+ER RA++EMNG+
Sbjct: 187 AFFQKSFPNSIKTVRVMTDPVTGKSRCFGFVRFTDESERQRALVEMNGA 235
>gi|367002926|ref|XP_003686197.1| hypothetical protein TPHA_0F02820 [Tetrapisispora phaffii CBS 4417]
gi|357524497|emb|CCE63763.1| hypothetical protein TPHA_0F02820 [Tetrapisispora phaffii CBS 4417]
Length = 608
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+F+G L ++ ++ +L+ LF FG ILSVKIP+GK CGFV+F + +A A++ +QG
Sbjct: 341 NTTVFIGGLSTSTNEYELQVLFEPFGNILSVKIPIGKNCGFVKFKRKIEANAAIKGMQGF 400
Query: 122 AIGKQTVRLSWG--HNPGNKQWRGDHINHWNGA 152
I +RLSWG +N + + HIN +N +
Sbjct: 401 IINGNPIRLSWGKSNNNASTKLNHKHINIYNTS 433
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
SI Q+ + K V D G ++G+GF+RF DE+ER A+ MNG
Sbjct: 201 SIFQKKYKSVKTVRVMTDPINGSSRGFGFIRFSDEDERKDALENMNG 247
>gi|349576587|dbj|GAA21758.1| K7_Ngr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 671
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 338 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 397
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
>gi|406603569|emb|CCH44882.1| Negative growth regulatory protein NGR1 [Wickerhamomyces ciferrii]
Length = 641
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+F+G L + ++ L LF FG I VKIP GKGCGF++F R+DAE A+ +QG
Sbjct: 386 NTTVFIGGLAPGIPEQTLAALFQPFGNITHVKIPPGKGCGFIRFDKREDAEAAIAGMQGF 445
Query: 122 AIGKQTVRLSWG 133
IG VRLSWG
Sbjct: 446 QIGGSRVRLSWG 457
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+V D TG ++ +GFVRF DE ER RA+ EM G
Sbjct: 207 RVMTDPITGTSRCFGFVRFSDEEERRRALTEMQG 240
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 31/133 (23%)
Query: 28 NTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------GKSNNATI 65
NTGH GY F+ F + + +++ + +NGS +S ++
Sbjct: 121 NTGHA-GYCFIEF-ETYDDAKSALSLNGSQIPNTNRLFRLNWASGATLSSPIPQSPEFSL 178
Query: 66 FVGALDSNVSDKDLRELF-SHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQKL 118
FVG L + ++ L LF +HF + +V++ P+ + GFV+F++ ++ AL ++
Sbjct: 179 FVGDLSPSTTEAHLLALFQTHFKSVKTVRVMTDPITGTSRCFGFVRFSDEEERRRALTEM 238
Query: 119 QGTAIGKQTVRLS 131
QG + +R++
Sbjct: 239 QGVWCAGRPLRVA 251
>gi|398365523|ref|NP_009771.3| Ngr1p [Saccharomyces cerevisiae S288c]
gi|585555|sp|P32831.2|NGR1_YEAST RecName: Full=Negative growth regulatory protein NGR1; AltName:
Full=RNA-binding protein RBP1
gi|536596|emb|CAA85176.1| NGR1 [Saccharomyces cerevisiae]
gi|285810543|tpg|DAA07328.1| TPA: Ngr1p [Saccharomyces cerevisiae S288c]
Length = 672
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 338 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 397
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
>gi|207347548|gb|EDZ73682.1| YBR212Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 617
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 338 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 397
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
>gi|190408636|gb|EDV11901.1| glucose-repressible RNA binding protein [Saccharomyces cerevisiae
RM11-1a]
gi|290878229|emb|CBK39288.1| Ngr1p [Saccharomyces cerevisiae EC1118]
Length = 670
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 338 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 397
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
>gi|256270156|gb|EEU05383.1| Ngr1p [Saccharomyces cerevisiae JAY291]
Length = 673
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 338 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 397
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
>gi|392301060|gb|EIW12149.1| Ngr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 670
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 338 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 397
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
>gi|365766915|gb|EHN08404.1| Ngr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 669
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 337 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 396
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 397 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 429
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 209 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 255
>gi|393216132|gb|EJD01623.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 937
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 7/98 (7%)
Query: 45 ERSRA----MIEMNGSDGKSN---NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG 97
E++RA +I NG S N T+FVG L +S+ LR F+ FG+I VK+P G
Sbjct: 554 EQARAILGNLIGPNGEQLTSTDPYNTTVFVGGLSPLISEDTLRTFFAPFGDIHYVKVPAG 613
Query: 98 KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
K CGFVQF + DAE A++++QG IG +RLSWG +
Sbjct: 614 KHCGFVQFVRKADAERAIERMQGFPIGGSRIRLSWGRS 651
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
AK+ +D TG ++GYGFVRF +E ++ RA+IEM+G
Sbjct: 390 AKIMLDPVTGVSRGYGFVRFTEEADQQRALIEMHG 424
>gi|4031|emb|CAA78478.1| Negative growth regulatory protein [Saccharomyces cerevisiae]
Length = 672
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 338 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 397
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
>gi|323356144|gb|EGA87949.1| Ngr1p [Saccharomyces cerevisiae VL3]
Length = 562
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 230 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 289
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 290 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 322
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 102 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 148
>gi|151946599|gb|EDN64821.1| glucose-repressible RNA binding protein [Saccharomyces cerevisiae
YJM789]
Length = 670
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 53/93 (56%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V IP GK C
Sbjct: 338 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVTIPNGKNC 397
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
>gi|344232977|gb|EGV64850.1| RNA-binding domain-containing protein [Candida tenuis ATCC 10573]
Length = 617
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 49/72 (68%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L S VS++ L LF FG + +KIP GK CGFV+++ R++AE A+ +QG
Sbjct: 393 NTTVFVGGLSSEVSEQTLFALFQPFGVVQQIKIPPGKNCGFVKYSTREEAEDAIASMQGY 452
Query: 122 AIGKQTVRLSWG 133
IG VRLSWG
Sbjct: 453 IIGGNRVRLSWG 464
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 12 SILQETFSRA----KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+ Q++F R+ +V D G ++ +GFVRF DE+ER RA+ EMNG
Sbjct: 217 AFFQKSFPRSVKTVRVMTDPVNGKSRCFGFVRFTDESERQRALHEMNG 264
>gi|448111139|ref|XP_004201770.1| Piso0_001971 [Millerozyma farinosa CBS 7064]
gi|359464759|emb|CCE88464.1| Piso0_001971 [Millerozyma farinosa CBS 7064]
Length = 655
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 49/72 (68%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L S V+D+ L LF FG I VKIP GK CGF++++ R++AE A+ +QG
Sbjct: 423 NTTVFVGGLSSEVNDQTLFALFKPFGIIQQVKIPPGKNCGFIKYSKRQEAEDAIASMQGF 482
Query: 122 AIGKQTVRLSWG 133
IG VRLSWG
Sbjct: 483 IIGGNRVRLSWG 494
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
E+ +V D +G ++ +GFVRF DE+ RS+A++EM G+
Sbjct: 266 ESVKTVRVITDPVSGKSRCFGFVRFSDEHARSKALVEMQGT 306
>gi|149242856|ref|XP_001526474.1| hypothetical protein LELG_03032 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450597|gb|EDK44853.1| hypothetical protein LELG_03032 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 692
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 50/74 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
++N T+FVG L S V++ L LF FG IL +KIP GK CGFV++A R++AE + +Q
Sbjct: 351 TSNTTVFVGGLSSEVTEATLFTLFKPFGTILQIKIPPGKNCGFVKYATREEAEETISAMQ 410
Query: 120 GTAIGKQTVRLSWG 133
G IG VRLSWG
Sbjct: 411 GFIIGGNRVRLSWG 424
>gi|328858949|gb|EGG08060.1| hypothetical protein MELLADRAFT_31227 [Melampsora larici-populina
98AG31]
Length = 76
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
+N T+FVG L + +S++ L+ F +FGEI VKIP KGCGFVQ+ R DAE A+ K+
Sbjct: 2 PSNTTVFVGGLPACISEETLKTFFQNFGEITYVKIPPNKGCGFVQYVRRADAEAAMLKMH 61
Query: 120 GTAI-GKQTVRLSWG 133
I GK +RLSWG
Sbjct: 62 DFPIHGKSRIRLSWG 76
>gi|448097114|ref|XP_004198591.1| Piso0_001971 [Millerozyma farinosa CBS 7064]
gi|359380013|emb|CCE82254.1| Piso0_001971 [Millerozyma farinosa CBS 7064]
Length = 655
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L + V+D+ L LF FG I VKIP GK CGF++++ R++AE A+ +QG
Sbjct: 423 NTTVFVGGLSAEVNDQTLFALFKPFGIIQQVKIPPGKNCGFIKYSKRQEAEDAIASMQGF 482
Query: 122 AIGKQTVRLSWG 133
IG VRLSWG
Sbjct: 483 IIGGNRVRLSWG 494
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
E+ +V D +G ++ +GFVRF DE+ RS+A++EM G+
Sbjct: 266 ESVKTVRVITDPVSGKSRCFGFVRFSDEHARSKALVEMQGT 306
>gi|68472181|ref|XP_719886.1| hypothetical protein CaO19.6790 [Candida albicans SC5314]
gi|68472416|ref|XP_719769.1| hypothetical protein CaO19.14082 [Candida albicans SC5314]
gi|46441601|gb|EAL00897.1| hypothetical protein CaO19.14082 [Candida albicans SC5314]
gi|46441727|gb|EAL01022.1| hypothetical protein CaO19.6790 [Candida albicans SC5314]
Length = 887
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L S+VS+ L LF FG I VKIP GK CGFV+++NR++AE A+ +Q
Sbjct: 518 PNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSNREEAEEAIAAMQ 577
Query: 120 GTAIGKQTVRLSWG 133
G IG VRLSWG
Sbjct: 578 GFVIGGNRVRLSWG 591
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+V D +G ++ +GFVRF +E+ER RA+IEMNG+
Sbjct: 285 VRVMTDPISGKSRCFGFVRFTEESERQRALIEMNGA 320
>gi|354545611|emb|CCE42339.1| hypothetical protein CPAR2_808880 [Candida parapsilosis]
Length = 739
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L S V++ L LF FG I +KIP GK CGFV+++ R++AE + +QG
Sbjct: 474 NNTTVFVGGLSSEVTEATLFTLFKPFGVIQQIKIPPGKNCGFVKYSTREEAERTIAAMQG 533
Query: 121 TAIGKQTVRLSWG 133
IG VRLSWG
Sbjct: 534 FIIGGNRVRLSWG 546
Score = 42.4 bits (98), Expect = 0.070, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+V D +G ++ +GFVRF +E+ER RA+ EMNG
Sbjct: 271 RVMTDPISGKSRCFGFVRFTEESERQRALTEMNG 304
>gi|440795338|gb|ELR16465.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 424
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 60/138 (43%), Gaps = 47/138 (34%)
Query: 34 GYGFVRFGDENERSRAMIEMNG-------------------------------------- 55
GYGFVRFGDE E AM EM G
Sbjct: 177 GYGFVRFGDETECYSAMTEMQGMMLGSRALRLSQATPKKSSSMGGGMGMPMGMPMGGGGG 236
Query: 56 ---------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFA 106
+N TIFVG LDS V + +LR F FGE++ V++P GK CGFVQF
Sbjct: 237 GGGHSAPMPEQADPSNTTIFVGNLDSTVGEDELRGHFMPFGELVYVRVPPGKNCGFVQFV 296
Query: 107 NRKDAEVALQKLQGTAIG 124
+R AE A+ ++ G IG
Sbjct: 297 HRSCAENAMLRVHGKTIG 314
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 59/166 (35%), Gaps = 61/166 (36%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-------GSDGKSNNAT---------- 64
K+ D TG GYGFV F +R + + N G + N AT
Sbjct: 49 KIIRDKMTGLPAGYGFVEFKSHEGAARVLNDFNNVPIPGVGRSFRLNWATFGIAARRPET 108
Query: 65 -----IFVGALDSNVSDKDL----------------------------------RELFSH 85
+FVG L +SD L + LFSH
Sbjct: 109 GPEFSLFVGDLAPEISDDQLQAFFGARYRSVRSAKVVTDAATAASRGTCSSAINKHLFSH 168
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
F + S G GFV+F + + A+ ++QG +G + +RLS
Sbjct: 169 FALLCS-----ADGYGFVRFGDETECYSAMTEMQGMMLGSRALRLS 209
>gi|255732850|ref|XP_002551348.1| predicted protein [Candida tropicalis MYA-3404]
gi|240131089|gb|EER30650.1| predicted protein [Candida tropicalis MYA-3404]
Length = 810
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 50/80 (62%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L S V++ L LF FG I VKIP GK CGFV+++ R +AE A+ +QG
Sbjct: 447 NNTTVFVGGLSSEVNEPTLYTLFKPFGMIQQVKIPPGKNCGFVKYSTRDEAEEAIAAMQG 506
Query: 121 TAIGKQTVRLSWGHNPGNKQ 140
IG VRLSWG N +
Sbjct: 507 FIIGGNRVRLSWGRVSMNNK 526
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 12 SILQETFSRA----KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+ Q+TF + +V D +G ++ +GFVRF +E+ER RA++EMNG
Sbjct: 243 AFFQKTFPNSIKTVRVMTDPISGKSRCFGFVRFTEESERQRALVEMNG 290
>gi|402587661|gb|EJW81596.1| nucleolysin TIAR [Wuchereria bancrofti]
Length = 440
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 44/174 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
++ N L++ F S AKV D+ T +KGYGFV + E RA+ +MNG
Sbjct: 190 PEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGR 249
Query: 57 ------------------DGK----------------SNNATIFVGALDSNVSDKDLREL 82
DG+ +N +++VG ++SN +D+DLR
Sbjct: 250 RTIRTNWATRKPTGTGAGDGQYGRSELNYDDVYNQTGPDNTSVYVGNVNSNANDEDLRAA 309
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136
F FG IL V+I +G FV+F + A A+ K+ G + Q ++ SWG P
Sbjct: 310 FDKFGRILEVRIFKSQGYAFVRFDKKDSACNAICKMNGQELCGQNIKCSWGRTP 363
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 29/141 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-----------------GSDGKSN 61
++ KV D G Y FV F D ++A+ MN GS K +
Sbjct: 120 TKTKVIFD---GTNDPYAFVEFADHYTAAQALQAMNKRVLLEKEMKVNWATEPGSQAKVD 176
Query: 62 NAT---IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAE 112
+ +FVG L V +K L++ F+ FGE+ K+ KG GFV + R++AE
Sbjct: 177 TSKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAE 236
Query: 113 VALQKLQGTAIGKQTVRLSWG 133
A++++ G +G++T+R +W
Sbjct: 237 RAIEQMNGQWLGRRTIRTNWA 257
>gi|164660242|ref|XP_001731244.1| hypothetical protein MGL_1427 [Malassezia globosa CBS 7966]
gi|159105144|gb|EDP44030.1| hypothetical protein MGL_1427 [Malassezia globosa CBS 7966]
Length = 564
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 5/108 (4%)
Query: 37 FVRFGDENER---SRAMIEMNGSDG-KSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
F + D E+ + A+ + + S N T+FVG+L S ++ LR LF+ +G I S+
Sbjct: 436 FTKESDSKEQPHLASALTKAHASSALDPTNTTVFVGSLFSLATENTLRTLFAPYGPIQSI 495
Query: 93 KIPVGKGCGFVQFANRKDAEVALQKLQGTAI-GKQTVRLSWGHNPGNK 139
IP G+ CGFVQFA+++DA A+ ++QG I G +RLSWG + G K
Sbjct: 496 NIPRGQDCGFVQFASKQDAARAIAEMQGFQIVGGGALRLSWGRSVGEK 543
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 40/174 (22%)
Query: 6 VSDITNSILQETF-----SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
SDI + +L E F + A+V D NTG +KGYGFV F + +A+ +M+G
Sbjct: 119 ASDINDKLLCEAFQSCGCADARVMWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLGS 178
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
+ NA ++VG L +VSD +L+ S
Sbjct: 179 RRIRCGWAQHKQENSQASFAAVDRVSTLSRAQADPENANVYVGNLAPDVSDAELQTAVSQ 238
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
FG +L VKI G F QFA+ DA A+ L G +G + ++ SWG + K
Sbjct: 239 FGAVLDVKIYRKGGYAFAQFASHADAVRAIVGLSGQNLGGKALKCSWGRHQARK 292
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 30/162 (18%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
+T+++LQE FS K+ D TG + GYGFV+F D A+ +NG
Sbjct: 33 VTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMALQSLNGRVLHGQE 92
Query: 56 --------SDGKSNNAT---IFVGALDSNVSDKDLRELFSHFG-----EILSVKIPVGKG 99
D + ++A+ IFVG L S+++DK L E F G + KG
Sbjct: 93 LRVNWAFQKDQREDSASQFQIFVGDLASDINDKLLCEAFQSCGCADARVMWDHNTGRSKG 152
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG-HNPGNKQ 140
GFV F R DAE AL ++ GT +G + +R W H N Q
Sbjct: 153 YGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWAQHKQENSQ 194
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
++VG L V+D L+E+FS G++ +KI K G GFVQF + + A++ALQ
Sbjct: 23 ALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMALQS 82
Query: 118 LQGTAIGKQTVRLSWG 133
L G + Q +R++W
Sbjct: 83 LNGRVLHGQELRVNWA 98
>gi|448520574|ref|XP_003868310.1| Ngr1 protein [Candida orthopsilosis Co 90-125]
gi|380352650|emb|CCG25406.1| Ngr1 protein [Candida orthopsilosis]
Length = 696
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L S V++ L LF FG I +KIP GK CGFV+++ R++AE + +QG
Sbjct: 424 NNTTVFVGGLSSEVTEATLFTLFKPFGVIQQIKIPPGKNCGFVKYSTREEAERTIGAMQG 483
Query: 121 TAIGKQTVRLSWGH-NPGNKQWR 142
IG VRLSWG + NK+++
Sbjct: 484 FIIGGNRVRLSWGRVSMNNKKYQ 506
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+V D +G ++ +GFVRF +E+ER RA+ EMNG
Sbjct: 254 RVMTDPVSGKSRCFGFVRFTEESERQRALNEMNG 287
>gi|452825487|gb|EME32483.1| RNA-binding protein [Galdieria sulphuraria]
Length = 523
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 16/143 (11%)
Query: 8 DITNSILQETFSR-AKVTI-----DSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
DI IL + FSR KVT D TG GY FV F E E +AM NG
Sbjct: 187 DINEDILLDAFSRFGKVTAVDLKRDKYTGEILGYAFVYFVQEEEAQKAMKLGNGMSLMNR 246
Query: 56 ---SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-GFVQFANRKDA 111
+ NAT+ + +DS ++D++++ F +GE++ + + C G+++F R+DA
Sbjct: 247 RIRTGCPQRNATLHIPQIDSEINDEEIKTTFRKYGELVEEETYFIRRCYGYIRFQAREDA 306
Query: 112 EVALQKLQGTAIGKQTVRLSWGH 134
E A Q L G IGK +R+ W +
Sbjct: 307 ERAKQHLDGATIGKFKIRVEWAN 329
Score = 35.8 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
++FVG L ++++ L + FS FG++ +V + K G FV F ++A+ A++
Sbjct: 178 SVFVGDLGGDINEDILLDAFSRFGKVTAVDLKRDKYTGEILGYAFVYFVQEEEAQKAMKL 237
Query: 118 LQGTAIGKQTVR 129
G ++ + +R
Sbjct: 238 GNGMSLMNRRIR 249
>gi|66802614|ref|XP_635179.1| RNA recognition motif RNP-1 domain-containing protein
[Dictyostelium discoideum AX4]
gi|60463492|gb|EAL61677.1| RNA recognition motif RNP-1 domain-containing protein
[Dictyostelium discoideum AX4]
Length = 463
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 36/164 (21%)
Query: 7 SDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
+D+T+ L F A+V +DS TG ++GYGFV+F + E+ +A+I+MNG
Sbjct: 122 TDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFASDVEKDKALIDMNGFYIN 181
Query: 56 ------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
+ NN I+V LD + + L+ +F +GEI
Sbjct: 182 NKPIKVNNPTHKRLNSQTSTIPDLTSTDPNNTAIYVSQLDHYIDEGVLQTIFGAYGEISY 241
Query: 92 VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
+K+ K FV F NR+ AE A L +G +++ WG N
Sbjct: 242 IKMLTNKFSAFVNFVNRESAEAAF-GLNNFPVGNTRLKVQWGKN 284
>gi|238881096|gb|EEQ44734.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 875
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L S+VS+ L LF FG I VKIP GK CGFV+++NR++AE A+ +QG
Sbjct: 511 NNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSNREEAEEAIAAMQG 570
Query: 121 TAIGKQTVRLSWG 133
IG VRLSWG
Sbjct: 571 FVIGGNRVRLSWG 583
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+V D +G ++ +GFVRF +E+ER RA+IEMNG+
Sbjct: 288 RVMTDPISGKSRCFGFVRFTEESERQRALIEMNGA 322
>gi|393909208|gb|EFO19127.2| hypothetical protein LOAG_09365 [Loa loa]
Length = 421
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 44/174 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
++ N L++ F S AKV D+ T +KGYGFV + E RA+ +MNG
Sbjct: 171 PEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGR 230
Query: 57 ------------------DGK----------------SNNATIFVGALDSNVSDKDLREL 82
DG+ +N +++VG ++S+ +D+DLR
Sbjct: 231 RTIRTNWATRKPTGTGAGDGQYGRTELNYDDVYNQTGPDNTSVYVGNVNSSANDEDLRAA 290
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136
F FG IL V+I +G FV+F + A A+ K+ G + Q ++ SWG P
Sbjct: 291 FDKFGRILEVRIFKSQGYAFVRFDKKDSACNAICKMNGQELCGQNIKCSWGRTP 344
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 29/141 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-----------------GSDGKSN 61
++ KV D G Y FV F D ++A+ MN GS K +
Sbjct: 101 TKTKVIFD---GTNDPYAFVEFADHYTAAQALQAMNKRVLLEKEMKVNWATEPGSQAKVD 157
Query: 62 NAT---IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAE 112
+ +FVG L V +K L++ F+ FGE+ K+ KG GFV + R++AE
Sbjct: 158 TSKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAE 217
Query: 113 VALQKLQGTAIGKQTVRLSWG 133
A++++ G +G++T+R +W
Sbjct: 218 RAIEQMNGQWLGRRTIRTNWA 238
>gi|312086091|ref|XP_003144941.1| hypothetical protein LOAG_09365 [Loa loa]
Length = 394
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 44/174 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
++ N L++ F S AKV D+ T +KGYGFV + E RA+ +MNG
Sbjct: 144 PEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGR 203
Query: 57 ------------------DGK----------------SNNATIFVGALDSNVSDKDLREL 82
DG+ +N +++VG ++S+ +D+DLR
Sbjct: 204 RTIRTNWATRKPTGTGAGDGQYGRTELNYDDVYNQTGPDNTSVYVGNVNSSANDEDLRAA 263
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136
F FG IL V+I +G FV+F + A A+ K+ G + Q ++ SWG P
Sbjct: 264 FDKFGRILEVRIFKSQGYAFVRFDKKDSACNAICKMNGQELCGQNIKCSWGRTP 317
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 29/141 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-----------------GSDGKSN 61
++ KV D G Y FV F D ++A+ MN GS K +
Sbjct: 74 TKTKVIFD---GTNDPYAFVEFADHYTAAQALQAMNKRVLLEKEMKVNWATEPGSQAKVD 130
Query: 62 NAT---IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAE 112
+ +FVG L V +K L++ F+ FGE+ K+ KG GFV + R++AE
Sbjct: 131 TSKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAE 190
Query: 113 VALQKLQGTAIGKQTVRLSWG 133
A++++ G +G++T+R +W
Sbjct: 191 RAIEQMNGQWLGRRTIRTNWA 211
>gi|170592088|ref|XP_001900801.1| RNA recognition motif. [Brugia malayi]
gi|158591668|gb|EDP30272.1| RNA recognition motif [Brugia malayi]
Length = 421
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 44/174 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
++ N L++ F S AKV D+ T +KGYGFV + E RA+ +MNG
Sbjct: 171 PEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGR 230
Query: 57 ------------------DGK----------------SNNATIFVGALDSNVSDKDLREL 82
DG+ +N +++VG ++S+ +D+DLR
Sbjct: 231 RTIRTNWATRKPTGTGAGDGQYGRSELNYDDVYNQTGPDNTSVYVGNVNSSANDEDLRAA 290
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136
F FG IL V+I +G FV+F + A A+ K+ G + Q ++ SWG P
Sbjct: 291 FDKFGRILEVRIFKSQGYAFVRFDKKDSACNAICKMNGQELCGQNIKCSWGRTP 344
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 29/141 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-----------------GSDGKSN 61
++ KV D G Y FV F D ++A+ MN GS K +
Sbjct: 101 TKTKVIFD---GTNDPYAFVEFADHYTAAQALQAMNKRVLLEKEMKVNWATEPGSQAKVD 157
Query: 62 NAT---IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAE 112
+ +FVG L V +K L++ F+ FGE+ K+ KG GFV + R++AE
Sbjct: 158 TSKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAE 217
Query: 113 VALQKLQGTAIGKQTVRLSWG 133
A++++ G +G++T+R +W
Sbjct: 218 RAIEQMNGQWLGRRTIRTNWA 238
>gi|241953763|ref|XP_002419603.1| RNA-binding protein, putative; U1 snRNP protein, putative [Candida
dubliniensis CD36]
gi|223642943|emb|CAX43198.1| RNA-binding protein, putative [Candida dubliniensis CD36]
Length = 792
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 50/74 (67%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
NN T+FVG L ++VS+ L LF FG I VKIP GK CGFV+++ R++AE A+ +Q
Sbjct: 462 PNNTTVFVGGLSADVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSTREEAEEAIAAMQ 521
Query: 120 GTAIGKQTVRLSWG 133
G IG VRLSWG
Sbjct: 522 GFVIGGNRVRLSWG 535
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+V D +G ++ +GFVRF +E+ER RA+IEMNG+
Sbjct: 263 VRVMTDPISGKSRCFGFVRFTEESERQRALIEMNGA 298
>gi|50304975|ref|XP_452445.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641578|emb|CAH01296.1| KLLA0C05522p [Kluyveromyces lactis]
Length = 540
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 51 IEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKD 110
+ N + ++ T+FVG L+ N+++ L ELF FG I VKIP GK CGFV++ R +
Sbjct: 433 VNNNAMNAGVSSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLE 492
Query: 111 AEVALQKLQGTAIGKQTVRLSWG 133
AE A+ LQG I +RLSWG
Sbjct: 493 AEAAINGLQGFIIMGSPIRLSWG 515
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68
S+ Q ++ K V D TG ++ +GFVRF +E ER A+IEMNG + +
Sbjct: 177 SLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYA 236
Query: 69 ALDSNVSDKDL 79
+NV+ + L
Sbjct: 237 TPRNNVAQQHL 247
>gi|410081644|ref|XP_003958401.1| hypothetical protein KAFR_0G02320 [Kazachstania africana CBS 2517]
gi|372464989|emb|CCF59266.1| hypothetical protein KAFR_0G02320 [Kazachstania africana CBS 2517]
Length = 620
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115
SD N T+FVG L+ +++ +L+++F FG I VKIP GK CGFV+F N+ DAE ++
Sbjct: 315 SDNDPTNTTVFVGNLNCKITEDELQKVFEPFGAIEKVKIPPGKKCGFVKFCNKIDAEASM 374
Query: 116 QKLQGTAIGKQTVRLSW 132
LQG + +R+SW
Sbjct: 375 YGLQGYFVAGSPIRISW 391
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 13 ILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+ Q+TF K V D TG ++ +GF+R DE ER A+ +MNG+
Sbjct: 200 LFQKTFKSVKTVRVMTDPITGESRCFGFIRLSDEFEREEALDKMNGT 246
>gi|365986018|ref|XP_003669841.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
gi|343768610|emb|CCD24598.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
Length = 426
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 35/155 (22%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F D++ +A+ EM G DG+ N
Sbjct: 200 ARVIYERGTDRSRGYGYVDFEDKSYAEKAIQEMQGKEIDGRPINVDMSTSKPAGGNDRAK 259
Query: 64 -----------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFA 106
T+F+G L N ++ E FS +GEI+SV+IP KG G+VQF+
Sbjct: 260 KFGDVPSEPSDTLFLGNLSFNADKDNIYETFSKYGEIISVRIPTHPETEQPKGFGYVQFS 319
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWG-HNPGNKQ 140
N +DA+ AL+ LQG I + VRL + P N +
Sbjct: 320 NIEDAKKALEGLQGEYIDNRAVRLDYSTPRPANPE 354
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L++ F H G ++ ++ +G G+V F ++ AE A+Q
Sbjct: 171 ATIFVGRLSWSIDDEWLKKEFEHIGGVVGARVIYERGTDRSRGYGYVDFEDKSYAEKAIQ 230
Query: 117 KLQGTAIGKQTVRL 130
++QG I + + +
Sbjct: 231 EMQGKEIDGRPINV 244
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 35/147 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V ++ T ++GYG+V F D++ +A+ EM G DG+ N
Sbjct: 191 ARVIMERGTDRSRGYGYVDFEDKSYAEKAIKEMQGKEIDGREINVDMSTSKPAAGNNDRA 250
Query: 64 ------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQF 105
T+F+G L N + ELFS +GEI+SV+IP KG G+VQ+
Sbjct: 251 KKFGDVPSEPSETLFLGNLSFNADRDAISELFSKYGEIISVRIPTHPETEQPKGFGYVQY 310
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLSW 132
N +DA+ AL+ LQG I + VRL +
Sbjct: 311 TNVEDAKKALEGLQGEYIDNRPVRLDY 337
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L++ F H G ++S ++ + +G G+V F ++ AE A++
Sbjct: 162 ATIFVGRLSWSIDDEWLKKEFEHIGGVVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIK 221
Query: 117 KLQGTAI 123
++QG I
Sbjct: 222 EMQGKEI 228
>gi|330846362|ref|XP_003295005.1| hypothetical protein DICPUDRAFT_51830 [Dictyostelium purpureum]
gi|325074406|gb|EGC28470.1| hypothetical protein DICPUDRAFT_51830 [Dictyostelium purpureum]
Length = 244
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 69/163 (42%), Gaps = 36/163 (22%)
Query: 25 IDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------------S 56
+D TG KGYGF++F +ENER RA+IEM G S
Sbjct: 1 MDPQTGLPKGYGFIKFLNENERDRALIEMQGFYINNKPIKVNSPTHKRLNSQLSTIPDLS 60
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQ 116
N I+V LD + + L+ +F +GEI +K+ K FV + R+ AE A
Sbjct: 61 STDPTNTAIYVSQLDPYIDEGVLQTIFGAYGEISFIKMLNNKFSAFVNYVTRESAEAAF- 119
Query: 117 KLQGTAIGKQTVRLSWGHN----PGNKQWRGDHINHWNGAHYG 155
L A+G +++ WG N P G + AHY
Sbjct: 120 GLNNYAVGNSRLKIQWGKNIAPPPPKSPLNGQQL---PPAHYA 159
>gi|383136461|gb|AFG49308.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136463|gb|AFG49309.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136465|gb|AFG49310.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136467|gb|AFG49311.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136469|gb|AFG49312.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136471|gb|AFG49313.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136473|gb|AFG49314.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136475|gb|AFG49315.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136477|gb|AFG49316.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136479|gb|AFG49317.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136481|gb|AFG49318.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136483|gb|AFG49319.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136485|gb|AFG49320.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136487|gb|AFG49321.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136489|gb|AFG49322.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136491|gb|AFG49323.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|383136493|gb|AFG49324.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
Length = 67
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 45/67 (67%), Gaps = 7/67 (10%)
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHI-------NH 148
VGKGCGFVQFANR AE ALQ+L GT I +QT+RLSWG +P NKQ N
Sbjct: 1 VGKGCGFVQFANRACAEEALQRLHGTVIRQQTIRLSWGRSPANKQQSQPQGQQPQSDPNQ 60
Query: 149 WNGAHYG 155
WNGA+YG
Sbjct: 61 WNGAYYG 67
>gi|361068433|gb|AEW08528.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
Length = 67
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 45/67 (67%), Gaps = 7/67 (10%)
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHI-------NH 148
VGKGCGFVQFANR AE ALQ+L GT I +QT+RLSWG +P NKQ N
Sbjct: 1 VGKGCGFVQFANRACAEEALQRLHGTVIRQQTIRLSWGRSPANKQNSQPQGQQPQSDPNQ 60
Query: 149 WNGAHYG 155
WNGA+YG
Sbjct: 61 WNGAYYG 67
>gi|344301504|gb|EGW31816.1| hypothetical protein SPAPADRAFT_56576 [Spathaspora passalidarum
NRRL Y-27907]
Length = 632
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
N T+FVG L S VS+ L LF FG I VKIP GK CGFV++ R++AE A+ +QG
Sbjct: 387 NTTVFVGGLSSEVSEPTLFTLFKPFGIIQQVKIPPGKNCGFVKYTTREEAEEAIAAMQGF 446
Query: 122 AIGKQTVRLSWGH-NPGNKQW 141
IG VRLSWG +P NK++
Sbjct: 447 IIGGNRVRLSWGRVSPTNKKY 467
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 12 SILQETFSRA----KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+ Q++F + +V D +G ++ +GFVRF DE+ER RA++EMNG
Sbjct: 230 AFFQKSFPNSIKTVRVMTDPISGKSRCFGFVRFTDESERQRALVEMNG 277
>gi|341900388|gb|EGT56323.1| CBN-TIAR-1 protein [Caenorhabditis brenneri]
Length = 399
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 42/168 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
S++ N L+E F S AKV D+NT +KGYGFV + E RA+ +MNG
Sbjct: 140 SEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGR 199
Query: 57 ---------------------DGKS----------NNATIFVGALDSNVSDKDLRELFSH 85
+ KS +N +++VG + +N+S++D+R+ F+
Sbjct: 200 RTIRTNWATRKPGDQEKPVHYNEKSYDEIYNQTSGDNTSVYVGNI-ANLSEEDIRQAFAS 258
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+G I V+I +G FV+F N+ A A+ ++ +G Q VR SWG
Sbjct: 259 YGRISEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQEVGGQLVRCSWG 306
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 31/152 (20%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-----------------GSDGK 59
+ ++ KV D G Y FV F D + S+A+ MN G
Sbjct: 67 SVTKTKVIFD---GANDPYAFVEFSDHAQASQALQTMNKRLLLDREMKVNWAVEPGQQPS 123
Query: 60 SNNAT----IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRK 109
+ T +FVG L S V ++ LRE F FG++ K+ KG GFV + R+
Sbjct: 124 KIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKRE 183
Query: 110 DAEVALQKLQGTAIGKQTVRLSWG-HNPGNKQ 140
+AE A++++ G +G++T+R +W PG+++
Sbjct: 184 EAERAIEQMNGQWLGRRTIRTNWATRKPGDQE 215
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---VGKGCGFVQFANRKD 110
NGSD T++VG LD VS+ + LF+ G + K+ FV+F++
Sbjct: 36 NGSDEPR---TLYVGNLDPTVSEDFVATLFNQIGSVTKTKVIFDGANDPYAFVEFSDHAQ 92
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A ALQ + + + ++++W PG + + D H+
Sbjct: 93 ASQALQTMNKRLLLDREMKVNWAVEPGQQPSKIDTTRHF 131
>gi|361068435|gb|AEW08529.1| Pinus taeda anonymous locus CL263Contig2_03 genomic sequence
gi|376339252|gb|AFB34150.1| hypothetical protein CL263Contig2_03, partial [Pinus cembra]
Length = 67
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 45/67 (67%), Gaps = 7/67 (10%)
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK-------QWRGDHINH 148
VGKGCGFVQF+NR AE ALQ+L GT I +QT+RLSWG +P NK Q N
Sbjct: 1 VGKGCGFVQFSNRACAEEALQRLHGTVIRQQTIRLSWGRSPANKQQPQPQGQQPQSDPNQ 60
Query: 149 WNGAHYG 155
WNGA+YG
Sbjct: 61 WNGAYYG 67
>gi|367006051|ref|XP_003687757.1| hypothetical protein TPHA_0K01910 [Tetrapisispora phaffii CBS 4417]
gi|357526062|emb|CCE65323.1| hypothetical protein TPHA_0K01910 [Tetrapisispora phaffii CBS 4417]
Length = 416
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 37/149 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGK-------------SNNA-- 63
A+V ++ T ++GYG+V F D++ +A+ EM+G DG+ SNN
Sbjct: 186 ARVMLERGTDRSRGYGYVDFSDKSYAEKAIKEMHGKEIDGREINCDMSTSKPAGSNNGAD 245
Query: 64 --------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFV 103
T+F+G L N + E+FS FGEI+SV++P KG G+V
Sbjct: 246 RAKKFGDIPSEPSETLFLGNLSFNADRDSIWEMFSKFGEIVSVRLPTHPETEQPKGFGYV 305
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSW 132
Q+ N DA+ AL+ LQG I + VRL +
Sbjct: 306 QYGNIDDAKKALEALQGEYIDNRPVRLDY 334
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L+ F H G ++ ++ + +G G+V F+++ AE A++
Sbjct: 157 ATIFVGRLSWSIDDEWLKNEFDHIGGVIGARVMLERGTDRSRGYGYVDFSDKSYAEKAIK 216
Query: 117 KLQGTAI 123
++ G I
Sbjct: 217 EMHGKEI 223
>gi|367015628|ref|XP_003682313.1| hypothetical protein TDEL_0F02910 [Torulaspora delbrueckii]
gi|359749975|emb|CCE93102.1| hypothetical protein TDEL_0F02910 [Torulaspora delbrueckii]
Length = 436
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 36/148 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F D++ +A+ EM+G DG+ N
Sbjct: 216 ARVIYERGTDRSRGYGYVDFEDKSYAEKAVKEMHGKEIDGRPINCDLSTSKPAGNPRDDR 275
Query: 64 -------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
T+F+G L N ++ E+FS FGEI+SV+IP KG G+VQ
Sbjct: 276 AKKFGDLPSEPSETLFLGNLSFNADRDNIYEMFSKFGEIVSVRIPTHPETEQPKGFGYVQ 335
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSW 132
+ N DA+ AL LQG I + VRL +
Sbjct: 336 YGNVDDAKKALDALQGEYIDNRPVRLDY 363
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 51 IEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
+E++G ATIFVG L ++ D+ L+ F H G ++S ++ +G G+V
Sbjct: 180 VELSGE-----PATIFVGRLSWSIDDEWLKNEFDHIGGVVSARVIYERGTDRSRGYGYVD 234
Query: 105 FANRKDAEVALQKLQGTAIGKQTV 128
F ++ AE A++++ G I + +
Sbjct: 235 FEDKSYAEKAVKEMHGKEIDGRPI 258
>gi|324510042|gb|ADY44204.1| Nucleolysin TIAR [Ascaris suum]
Length = 367
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 40/170 (23%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
++I N+ L+ F S AKV D T +KGYGFV F + +A+ MNG
Sbjct: 143 TEIDNNALKAAFAAYGEISEAKVIRDPQTMKSKGYGFVSFPSKESAEKAIAGMNGQLIGR 202
Query: 56 -----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHF 86
+ +++N +++VG + S+ +++DLRE F+
Sbjct: 203 RQIRTNWASRKPASAEEAHTKEQTFDEVFNATRADNTSVYVGNVHSSTTEEDLREAFASI 262
Query: 87 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136
G I V+I +G FV++A ++ A A+ ++ G I Q ++ SWG P
Sbjct: 263 GAISEVRIFKQQGYAFVRYATKEAATRAIMQMNGKEINGQNIKCSWGRTP 312
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQKL 118
+FVG L + + + L+ F+ +GEI K+ P KG GFV F +++ AE A+ +
Sbjct: 136 VFVGDLATEIDNNALKAAFAAYGEISEAKVIRDPQTMKSKGYGFVSFPSKESAEKAIAGM 195
Query: 119 QGTAIGKQTVRLSWG 133
G IG++ +R +W
Sbjct: 196 NGQLIGRRQIRTNWA 210
>gi|110681486|emb|CAL25353.1| ACBF-like dna binding protein [Platanus x acerifolia]
Length = 216
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 46/57 (80%), Gaps = 7/57 (12%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
SD+T+++LQETF+ AKV ID+NTG +KGYGFVRFGD+NERSRA+ EMNG+
Sbjct: 131 SDVTDTLLQETFASRYPSVKGAKVVIDANTGRSKGYGFVRFGDDNERSRAISEMNGA 187
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVAL 115
N TI+VG L + L F+H GE++S+K+ K G GFV+F +R+ AE L
Sbjct: 28 NKTIWVGDLHYWMDGNYLNNCFAHTGEVISIKVIRNKQTGQSEGYGFVEFFSREAAEKVL 87
Query: 116 QKLQGTAIG--KQTVRLSWG 133
Q GTA+ +Q RL+W
Sbjct: 88 QNYNGTAMPNTEQPFRLNWA 107
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS----------------------DGK 59
KV + TG ++GYGFV F + + NG+
Sbjct: 59 KVIRNKQTGQSEGYGFVEFFSREAAEKVLQNYNGTAMPNTEQPFRLNWASFSMGERRSEA 118
Query: 60 SNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
++ +IFVG L S+V+D L+E F S + + K+ + KG GFV+F + +
Sbjct: 119 GSDHSIFVGDLSSDVTDTLLQETFASRYPSVKGAKVVIDANTGRSKGYGFVRFGDDNERS 178
Query: 113 VALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 179 RAISEMNGAYCSNRPMRV 196
>gi|367014399|ref|XP_003681699.1| hypothetical protein TDEL_0E02450 [Torulaspora delbrueckii]
gi|359749360|emb|CCE92488.1| hypothetical protein TDEL_0E02450 [Torulaspora delbrueckii]
Length = 472
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FV +L V++ +L+ F FG ++ K+P K CGFVQ+ +R AE+A+ KLQG
Sbjct: 277 NNTTLFVSSLSHMVTENELKAFFQPFGNVIYAKLPENKQCGFVQYVDRASAEMAILKLQG 336
Query: 121 TAIGKQTVRLSWGH 134
I +++SWG
Sbjct: 337 FPIRGSRIKISWGR 350
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 30/130 (23%)
Query: 34 GYGFVRFGDENERSRAMIEM---------------------NGSDGKSNNATIFVGALDS 72
GY FV+F ++ S A+++ N +DG SN ++FVG L
Sbjct: 94 GYCFVQFSSRSQASNALLKNGMAIPGYPSKTLRLNWSSASGNSADG-SNEISVFVGDLAP 152
Query: 73 NVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQGTAIGK 125
NV++ DL ELF S + K+ V KG FV+F N++D + ALQ++ GT +
Sbjct: 153 NVTESDLFELFISKCPSTSNAKVMYDQVTGVSKGYAFVRFGNQEDQQRALQEMTGTFLKG 212
Query: 126 QTVRL-SWGH 134
+ +R+ S GH
Sbjct: 213 RAIRVGSAGH 222
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 6 VSDITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
++T S L E F S AKV D TG +KGY FVRFG++ ++ RA+ EM G+
Sbjct: 151 APNVTESDLFELFISKCPSTSNAKVMYDQVTGVSKGYAFVRFGNQEDQQRALQEMTGT 208
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 36/148 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V ++ T ++GYG+V F D + +A+ EM G DG+ N
Sbjct: 178 ARVIMERGTDRSRGYGYVDFEDISYAEKALKEMQGKEIDGRPINVDMSTSKPAGGASNDR 237
Query: 64 -------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
T+F+G L + +L E+F FGEI+SV+IP KG G+VQ
Sbjct: 238 AKKFGDVPSEPSDTLFLGNLSFDADRDNLYEIFGKFGEIISVRIPTHPETEQPKGFGYVQ 297
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSW 132
+ N +DA+ AL LQG +I + VRL +
Sbjct: 298 YTNTEDAKKALDALQGESINDRPVRLDF 325
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQ 116
AT+FVG L +V D+ L+ F+ G ++S ++ + +G G+V F + AE AL+
Sbjct: 149 ATLFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKALK 208
Query: 117 KLQGTAIGKQTV 128
++QG I + +
Sbjct: 209 EMQGKEIDGRPI 220
>gi|268531322|ref|XP_002630787.1| Hypothetical protein CBG02484 [Caenorhabditis briggsae]
Length = 403
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 42/168 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
S++ N L+E F S AKV D+NT +KGYGFV + E RA+ +MNG
Sbjct: 140 SEVDNQKLREAFIPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGR 199
Query: 56 --------------SDGKSN----------------NATIFVGALDSNVSDKDLRELFSH 85
+ SN N +++VG + +N+++ ++R+ F+
Sbjct: 200 RTIRTNWATRKPGDQEKPSNYNEKSYDEVYNQTSGDNTSVYVGNI-ANLTEDEIRQAFAS 258
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+G I V+I +G FV+F N+ A A+ ++ +G Q VR SWG
Sbjct: 259 YGRISEVRIFKMQGYAFVKFENKNAAAKAITEMNNQDVGGQMVRCSWG 306
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 31/152 (20%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-----GSDGKSNNAT------- 64
+ ++ KV D G Y FV F D + S+A+ MN + K N A
Sbjct: 67 SVTKTKVIHD---GANDPYAFVEFSDHGQASQALQTMNKRLLHDREMKVNWAVEPGQQPS 123
Query: 65 ---------IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRK 109
+FVG L S V ++ LRE F FG++ K+ KG GFV + R+
Sbjct: 124 KIDTTRHFHVFVGDLSSEVDNQKLREAFIPFGDVSDAKVIRDTNTTKSKGYGFVSYPKRE 183
Query: 110 DAEVALQKLQGTAIGKQTVRLSWG-HNPGNKQ 140
+AE A++++ G +G++T+R +W PG+++
Sbjct: 184 EAERAIEQMNGQWLGRRTIRTNWATRKPGDQE 215
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---VGKGCGFVQFANRKD 110
NGSD T++VG LD +VS+ + LF+ G + K+ FV+F++
Sbjct: 36 NGSDEPR---TLYVGNLDPSVSEDFIATLFNQIGSVTKTKVIHDGANDPYAFVEFSDHGQ 92
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A ALQ + + + ++++W PG + + D H+
Sbjct: 93 ASQALQTMNKRLLHDREMKVNWAVEPGQQPSKIDTTRHF 131
>gi|392927018|ref|NP_509705.3| Protein TIAR-3 [Caenorhabditis elegans]
gi|211970450|emb|CAB01717.3| Protein TIAR-3 [Caenorhabditis elegans]
Length = 450
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 37/163 (22%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
D++N +L+ TF S AKV D T +KGYGFV F ++ A+ MNG
Sbjct: 235 DVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKR 294
Query: 56 -------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
+ K++N +++VG + +D DLR+LFS +G+I
Sbjct: 295 AVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGDIA 354
Query: 91 SVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V+I + FV++ ++ A A+ ++ G + VR SWG
Sbjct: 355 EVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWG 397
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
+FVG L +VS++ L+ F+ FGE+ K+ KG GFV F N+++AE A+ +
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 119 QGTAIGKQTVRLSWG 133
G IGK+ VR +W
Sbjct: 287 NGKWIGKRAVRTNWA 301
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 42/168 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
S++ N L+E F S AKV D+NT +KGYGFV + E RA+ +MNG
Sbjct: 142 SEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGR 201
Query: 57 ---------------------DGKS----------NNATIFVGALDSNVSDKDLRELFSH 85
+ KS +N +++VG + +N+S+ ++R+ F+
Sbjct: 202 RTIRTNWATRKPGDQEKPTHYNEKSFDEIYNQTSGDNTSVYVGNI-ANLSEDEIRQAFAS 260
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+G I V+I +G FV+F N+ A A+ ++ +G Q VR SWG
Sbjct: 261 YGRISEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQEVGGQLVRCSWG 308
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-----------------GSDGK 59
+ ++ KV D G Y FV F D ++ S+A+ MN G
Sbjct: 69 SVTKTKVIFD---GANDPYAFVEFLDHSQASQALQTMNKRLLLDREMKVNWAVEPGQQPS 125
Query: 60 SNNAT----IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRK 109
+ T +FVG L S V ++ LRE F FG++ K+ KG GFV + R+
Sbjct: 126 KVDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKRE 185
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+AE A++++ G +G++T+R +W Q + H N
Sbjct: 186 EAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPTHYNE 224
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---VGKGCGFVQFANRKD 110
NGSD T++VG LD +VS+ + LF+ G + K+ FV+F +
Sbjct: 38 NGSDEPR---TLYVGNLDPSVSEDLIATLFNQIGSVTKTKVIFDGANDPYAFVEFLDHSQ 94
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A ALQ + + + ++++W PG + + D H+
Sbjct: 95 ASQALQTMNKRLLLDREMKVNWAVEPGQQPSKVDTTRHF 133
>gi|405975383|gb|EKC39949.1| tRNA selenocysteine 1-associated protein 1 [Crassostrea gigas]
Length = 337
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 80/161 (49%), Gaps = 36/161 (22%)
Query: 6 VSDITNSI----LQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
V D+T + L + FSR AKV ++ +G +KGYGFVRF +E ++ RA+IEM
Sbjct: 70 VGDLTEEVDDYTLYQAFSRRFKSCRSAKVVLEP-SGKSKGYGFVRFTEETDQQRALIEMQ 128
Query: 55 GSDG-------------KSNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKI---PVG 97
G KS ++FVG L V D L + FS F S K+ P G
Sbjct: 129 HMQGVGKKPIRVSLATPKSPEYSLFVGDLTEEVDDYTLYQAFSRRFKSCRSAKVVLEPSG 188
Query: 98 --KGCGFVQFANRKDAEVAL---QKLQGTAIGKQTVRLSWG 133
KG GFV+F D + AL Q +QG +GK+ +R+S
Sbjct: 189 KSKGYGFVRFTEETDQQRALIEMQHMQG--VGKKPIRVSLA 227
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 33/138 (23%)
Query: 34 GYGFVRFGDENERSRAMIEMNGSDGKSNNAT---------------------IFVGALDS 72
GY F+ F D +AM+++NG + +++ T +FVG L
Sbjct: 16 GYCFIDFHDPENAHQAMLKLNGKNIPNSSPTRRFKLNSASYGKEHLSTPEYSLFVGDLTE 75
Query: 73 NVSDKDLRELFS-HFGEILSVKI---PVG--KGCGFVQFANRKDAEVAL---QKLQGTAI 123
V D L + FS F S K+ P G KG GFV+F D + AL Q +QG +
Sbjct: 76 EVDDYTLYQAFSRRFKSCRSAKVVLEPSGKSKGYGFVRFTEETDQQRALIEMQHMQG--V 133
Query: 124 GKQTVRLSWGHNPGNKQW 141
GK+ +R+S P + ++
Sbjct: 134 GKKPIRVSLA-TPKSPEY 150
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 35/160 (21%)
Query: 9 ITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
IT+ L F ++AK+ D G + FV F D N+ S+A+ MNG
Sbjct: 49 ITDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHNQASQALQSMNGRQLLERE 108
Query: 56 ----------SDGKSNNAT------IFVGALDSNVSDKDLRELFSHFGEILSVKI----- 94
G N +FVG L + + LRE F FGE+ KI
Sbjct: 109 MRVNWAVEPNQPGDRNKPETSRHFHVFVGDLSAEIDSTKLREAFLPFGEVSEAKIIRDNA 168
Query: 95 -PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV + R+DAE A++++ G +G++T+R +W
Sbjct: 169 TNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNWA 208
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQ 116
+ ++N +++VG ++S +++ ++R F FG+I+ V+I +G FV+F ++ A A+
Sbjct: 251 EAAADNTSVYVGNINS-LTEDEIRRGFERFGQIVEVRIFKSQGYAFVKFEQKESAARAIV 309
Query: 117 KLQGTAIGKQTVRLSW 132
++ + Q VR SW
Sbjct: 310 QMNNQDVSGQMVRCSW 325
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRK 109
+ G + T+FVG LD ++D+ L LF+ G + KI + FV+F++
Sbjct: 31 ASGSEDPRTLFVGNLDPAITDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHN 90
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNP 136
A ALQ + G + ++ +R++W P
Sbjct: 91 QASQALQSMNGRQLLEREMRVNWAVEP 117
>gi|410080926|ref|XP_003958043.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
gi|372464630|emb|CCF58908.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
Length = 412
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 35/147 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F ++ +A+ EM+G DG+ N
Sbjct: 194 ARVIYERGTDRSRGYGYVDFENKEYAEKAVKEMHGKEIDGREINCDMSTSKPAAGNNDRA 253
Query: 64 ------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQF 105
T+F+G L N ++ E+FS FGEI+SV+IP KG G+VQ+
Sbjct: 254 KKFGDVPSEPSETLFLGNLSFNADRDNISEMFSKFGEIVSVRIPTHPETEQPKGFGYVQY 313
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLSW 132
N +DA+ AL LQG I + VRL +
Sbjct: 314 TNVEDAKKALDALQGEYIDNRPVRLDF 340
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L+ F H G ++ ++ +G G+V F N++ AE A++
Sbjct: 165 ATIFVGRLSWSIDDEWLKNEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKEYAEKAVK 224
Query: 117 KLQGTAI 123
++ G I
Sbjct: 225 EMHGKEI 231
>gi|308198150|ref|XP_001387102.2| negative growth regulatory protein [Scheffersomyces stipitis CBS
6054]
gi|149389050|gb|EAZ63079.2| negative growth regulatory protein [Scheffersomyces stipitis CBS
6054]
Length = 690
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L S V++ L LF FG I VKIP GK CGF++++ R++AE A+ +QG
Sbjct: 400 NNTTVFVGGLSSEVTESTLFTLFKPFGIIQQVKIPPGKNCGFIKYSTREEAEEAIAAMQG 459
Query: 121 TAIGKQTVRLSWGHNPGNKQ 140
IG VRLSWG N +
Sbjct: 460 FIIGGNRVRLSWGRVSMNNK 479
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+V D +G ++ +GFVRF DE+ER RA++EMNG
Sbjct: 250 RVMTDPVSGKSRCFGFVRFTDESERQRALVEMNG 283
>gi|294658145|ref|XP_002770728.1| DEHA2F02596p [Debaryomyces hansenii CBS767]
gi|202952907|emb|CAR66259.1| DEHA2F02596p [Debaryomyces hansenii CBS767]
Length = 747
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 53/80 (66%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+FVG L S V+++ L LF FG I VKIP GK CGF+++++R++AE A+ +QG
Sbjct: 421 NNTTVFVGGLSSEVTEQTLFTLFKPFGIIQQVKIPPGKNCGFIKYSSREEAEEAIAAMQG 480
Query: 121 TAIGKQTVRLSWGHNPGNKQ 140
IG VRLSWG N +
Sbjct: 481 FIIGGNRVRLSWGRVSMNNK 500
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+V D +G ++ +GFVRF DE+ER RA++EM+G+
Sbjct: 257 RVMTDPVSGKSRCFGFVRFTDESERQRALVEMHGA 291
>gi|7446337|pir||T15542 hypothetical protein C18A3.5 - Caenorhabditis elegans
Length = 448
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 27/156 (17%)
Query: 20 RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-----GSDGKSNNAT---------- 64
R + D+ TG Y FV F D + S+A+ MN + K N A
Sbjct: 111 RQPIHTDTETGSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQSKID 170
Query: 65 ------IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAE 112
+FVG L S V ++ LRE F FG++ K+ KG GFV + R++AE
Sbjct: 171 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 230
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
A++++ G +G++T+R +W Q + H N
Sbjct: 231 RAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNE 266
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 42/168 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
S++ N L+E F S AKV D+NT +KGYGFV + E RA+ +MNG
Sbjct: 184 SEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGR 243
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
+ +N +++VG + S +++ ++R+ F+
Sbjct: 244 RTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFAS 302
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FG I V+I +G FV+F N+ A A+ ++ +G Q VR SWG
Sbjct: 303 FGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWG 350
>gi|50286801|ref|XP_445830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525136|emb|CAG58749.1| unnamed protein product [Candida glabrata]
Length = 425
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 36/148 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F D++ +A+ EM+G DG+ N
Sbjct: 205 ARVMYERGTDRSRGYGYVDFEDKSYAEKAVKEMHGKEIDGRPINVDMSTSKPTVNPREDR 264
Query: 64 -------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
T+F+G L N ++ E+F FGEI+SV+IP KG G+VQ
Sbjct: 265 QKRFGDIPSEPSDTLFLGNLSFNADRDNIYEIFGKFGEIISVRIPTHPETEQPKGFGYVQ 324
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSW 132
+ + DA+ AL+ LQG I + VRL +
Sbjct: 325 YTSIDDAKKALEALQGEYIDNRPVRLDY 352
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 43 ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
E+E + + +DG+ AT+FVG L ++ D+ L++ F H G +++ ++
Sbjct: 158 EDEEEESSPKKAKTDGEP--ATVFVGRLSWSIDDEWLKQEFEHIGGVVAARVMYERGTDR 215
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAI 123
+G G+V F ++ AE A++++ G I
Sbjct: 216 SRGYGYVDFEDKSYAEKAVKEMHGKEI 242
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNG- 55
+IT+S L + F +A +V D +T + GYG+V + + + +RA+ +NG
Sbjct: 28 NITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGK 87
Query: 56 -----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KG 99
S KS A IF+ LD ++ +K L + FS FG ILS KI P G KG
Sbjct: 88 PIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKG 147
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQF N + A+ A+ KL G I + V
Sbjct: 148 YGFVQFDNEESAQNAIDKLNGMLINDKQV 176
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANR 108
G +G +N A+++VG LD N++D L +LF G++LSV++ G G+V ++N
Sbjct: 10 GPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNP 69
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGH 134
+DA AL L T + + +R+ + H
Sbjct: 70 QDAARALDLLNFTPLNGKPIRIMYSH 95
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L +TFS K+ D +G +KGYGFV+F +E A+ ++NG
Sbjct: 117 IDNKALHDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQ 175
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PV 96
+ K+ ++V L + +++DL+ +F FG I SV +
Sbjct: 176 VYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGK 235
Query: 97 GKGCGFVQFANRKDAEVALQKLQG 120
K GFV F N DA A++ L G
Sbjct: 236 SKCFGFVNFENADDAAEAVEALNG 259
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGFVQFANRKDAEV 113
K +++ LD ++ D L+ELFS FG I S K+ P G +G GFV F+ ++A
Sbjct: 296 KFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASR 355
Query: 114 ALQKLQGTAI 123
AL ++ G +
Sbjct: 356 ALTEMNGKMV 365
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNG- 55
+IT+S L + F +A +V D +T + GYG+V + + + +RA+ +NG
Sbjct: 28 NITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGK 87
Query: 56 -----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KG 99
S KS A IF+ LD ++ +K L + FS FG ILS KI P G KG
Sbjct: 88 PIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKG 147
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQF N + A+ A+ KL G I + V
Sbjct: 148 YGFVQFDNEESAQNAIDKLNGMLINDKQV 176
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANR 108
G +G +N A+++VG LD N++D L +LF G++LSV++ G G+V ++N
Sbjct: 10 GPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNP 69
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGH 134
+DA AL L T + + +R+ + H
Sbjct: 70 QDAARALDLLNFTPLNGKPIRIMYSH 95
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L +TFS K+ D +G +KGYGFV+F +E A+ ++NG
Sbjct: 117 IDNKALHDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQ 175
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PV 96
+ K+ ++V L + +++DL+ +F FG I SV +
Sbjct: 176 VYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGK 235
Query: 97 GKGCGFVQFANRKDAEVALQKLQG 120
K GFV F N DA A++ L G
Sbjct: 236 SKCFGFVNFENADDAAEAVEALNG 259
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGFVQFANRKDAEV 113
K +++ LD ++ D L+ELFS FG I S K+ P G +G GFV F+ ++A
Sbjct: 296 KFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASR 355
Query: 114 ALQKLQGTAI 123
AL ++ G +
Sbjct: 356 ALTEMNGKMV 365
>gi|281206149|gb|EFA80338.1| RNA recognition motif-containing protein RRM [Polysphondylium
pallidum PN500]
Length = 640
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 24/126 (19%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------SDGKSNN 62
AKV +D+ G++ GYGFVRF +E +A+ M+G + K +
Sbjct: 98 AKVMVDAK-GNSYGYGFVRFSSPSESKKAIDNMDGFQLMHKKLLCRLSNLYSNCNNKYPS 156
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQK 117
+F+ L + +SD L+ELFS FGEIL K+ + K GFV+F N DA A+Q
Sbjct: 157 NNLFLKPLPATLSDDQLKELFSPFGEILECKVMIDQNGNSKLAGFVRFCNEADATKAMQA 216
Query: 118 LQGTAI 123
+ GT +
Sbjct: 217 MNGTKM 222
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKL 118
+FV L V D L +LFS FG + SV++ KG GFV+F N+ DA +L ++
Sbjct: 508 LFVFHLPGFVDDSYLYKLFSRFGPLQSVRVITDKDTGENKGYGFVKFQNKDDAITSLNEM 567
Query: 119 QGTAIGKQTVRL 130
G +G++ +++
Sbjct: 568 NGLQVGQKYLKV 579
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 7 SDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
+ +++ L+E FS KV ID N G++K GFVRF +E + ++AM MNG+ K
Sbjct: 166 ATLSDDQLKELFSPFGEILECKVMIDQN-GNSKLAGFVRFCNEADATKAMQAMNGTKMKD 224
Query: 61 NNATIFVGALDSNVSDKDLREL--FSHF 86
+ A + V D N K LR+ +SHF
Sbjct: 225 SPAPLVVKYAD-NEHQKSLRKQRKYSHF 251
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+ +S L + FSR +V D +TG KGYGFV+F ++++ ++ EMNG
Sbjct: 517 VDDSYLYKLFSRFGPLQSVRVITDKDTGENKGYGFVKFQNKDDAITSLNEMNG 569
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK-----GCGFVQFANRKDAEV 113
+ + +FV L + D +L LFS FG+++S K+ V G GFV+F++ +++
Sbjct: 65 EKDQTNVFVKYLPNEYGDYELFTLFSPFGKVMSAKVMVDAKGNSYGYGFVRFSSPSESKK 124
Query: 114 ALQKLQG 120
A+ + G
Sbjct: 125 AIDNMDG 131
>gi|42571787|ref|NP_973984.1| RNA-binding protein 47C [Arabidopsis thaliana]
gi|332194052|gb|AEE32173.1| RNA-binding protein 47C [Arabidopsis thaliana]
Length = 310
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 43/56 (76%), Gaps = 7/56 (12%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+++++L ETFS AKV +D+NTG +KGYGFVRFGDENER++AM EMNG
Sbjct: 206 PDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 30/140 (21%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------D 57
KV + N G ++GYGFV F + + + E NG+ +
Sbjct: 132 VKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLE 191
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKD 110
+ +IFVG L +VSD L E FS + + + K+ + KG GFV+F + +
Sbjct: 192 NNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENE 251
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 252 RTKAMTEMNGVKCSSRAMRI 271
>gi|449530398|ref|XP_004172182.1| PREDICTED: uncharacterized protein LOC101232188 [Cucumis sativus]
Length = 167
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 39/49 (79%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANR 108
S IFVG LD +VSD+DL++ FS G+++SVKIP+GKGCGF+QF NR
Sbjct: 118 SPPLPIFVGGLDYDVSDEDLKQAFSKLGDVVSVKIPIGKGCGFLQFTNR 166
>gi|294884882|gb|ADF47449.1| TIA1-like protein [Dugesia japonica]
Length = 383
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 40/167 (23%)
Query: 7 SDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+I L+E FS K+ D +T KGYGFV + + E A+ +MNG
Sbjct: 122 PEIETQFLRERFSLFGRVTECKIIKDMHTQKPKGYGFVAYATKEEAEEALNKMNGKFLGT 181
Query: 56 --------------SDGK---------------SNNATIFVGALDSNVSDKDLRELFSHF 86
GK +N TI+VG + + + ++ LRE F F
Sbjct: 182 RQIRTNWAIRRPPQPPGKDQKPLDYNEVFAASSESNCTIYVGGITNGLCEELLRESFKEF 241
Query: 87 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G+IL V+I KG FV+F + + A A+ ++ G +G Q + SWG
Sbjct: 242 GDILEVRIFKEKGYAFVRFDSHEGATQAIIRMHGKEVGSQLCKCSWG 288
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEV 113
SN+ IFVG + + + LRE FS FG + KI KG GFV +A +++AE
Sbjct: 110 SNHYHIFVGDIAPEIETQFLRERFSLFGRVTECKIIKDMHTQKPKGYGFVAYATKEEAEE 169
Query: 114 ALQKLQGTAIGKQTVRLSWG-----HNPGNKQWRGDH 145
AL K+ G +G + +R +W PG Q D+
Sbjct: 170 ALNKMNGKFLGTRQIRTNWAIRRPPQPPGKDQKPLDY 206
>gi|268578407|ref|XP_002644186.1| Hypothetical protein CBG17168 [Caenorhabditis briggsae]
Length = 244
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 37/164 (22%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
D++N +L+ TF S AKV D+ T +KGYGFV F ++ A+ MNG
Sbjct: 15 DVSNELLKSTFQKFGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAISGMNGKWIGKR 74
Query: 56 -------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
+ K++N +++VG + +D DLR+ FS +G+I
Sbjct: 75 AVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISPQTTDVDLRDSFSTYGDIA 134
Query: 91 SVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
V++ + FV++ ++ A A+ ++ G + VR SWG
Sbjct: 135 EVRVFKTQRYAFVRYEKKECATKAIMEMNGKELAGNQVRCSWGR 178
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
+FVG L +VS++ L+ F FGE+ K+ KG GFV F N+++AE A+ +
Sbjct: 7 VFVGDLSKDVSNELLKSTFQKFGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAISGM 66
Query: 119 QGTAIGKQTVRLSWG 133
G IGK+ VR +W
Sbjct: 67 NGKWIGKRAVRTNWA 81
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 30/155 (19%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGK 59
++T+S L + F++ +V D +T + GYG+V + + N+ SRAM +N + +GK
Sbjct: 48 NVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEMLNFTPVNGK 107
Query: 60 S---------------NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S +A IF+ LD ++ +K L + FS FG ILS KI KG
Sbjct: 108 SIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKG 167
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
GFVQ+ N + A+ A+ KL G + + V + GH
Sbjct: 168 YGFVQYDNEESAQGAIDKLNGMLMNDKQVYV--GH 200
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L +TFS K+ DSN G +KGYGFV++ +E A+ ++NG
Sbjct: 137 IDNKALHDTFSSFGNILSCKIATDSN-GQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQ 195
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PV 96
+ G + ++V L + +D +L+++F FG I S +
Sbjct: 196 VYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGK 255
Query: 97 GKGCGFVQFANRKDAEVALQKLQG 120
K GF+ F +DA A++ L G
Sbjct: 256 SKCFGFINFETAEDAAKAVESLNG 279
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 38/141 (26%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--------GKSNNAT-------- 64
+ V + G +K +GF+ F + ++A+ +NG GK+ +
Sbjct: 245 SAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQELKS 304
Query: 65 -----------------IFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGF 102
++V LD + D+ L+ELFS FG I S K+ P G +G GF
Sbjct: 305 KFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGSGF 364
Query: 103 VQFANRKDAEVALQKLQGTAI 123
V F+ ++A AL ++ G I
Sbjct: 365 VAFSTSEEASRALSEMNGKMI 385
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDA 111
G + +++VG L+ NV+D L +LF+ G+++SV++ G G+V ++N DA
Sbjct: 33 GGLTSTSLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDA 92
Query: 112 EVALQKLQGTAIGKQTVRLSWGH 134
A++ L T + +++R+ + H
Sbjct: 93 SRAMEMLNFTPVNGKSIRVMYSH 115
>gi|32564506|ref|NP_871980.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
gi|373219014|emb|CCD65019.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
Length = 295
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 42/168 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
S++ N L+E F S AKV D+NT +KGYGFV + E RA+ +MNG
Sbjct: 31 SEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGR 90
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
+ +N +++VG + S +++ ++R+ F+
Sbjct: 91 RTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFAS 149
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FG I V+I +G FV+F N+ A A+ ++ +G Q VR SWG
Sbjct: 150 FGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWG 197
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 11/97 (11%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
+FVG L S V ++ LRE F FG++ K+ KG GFV + R++AE A++++
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 119 QGTAIGKQTVRLSWG-HNPGNKQWRGDHINHWNGAHY 154
G +G++T+R +W PG++ + +H+N Y
Sbjct: 84 NGQWLGRRTIRTNWATRKPGDQ----EKPSHYNEKSY 116
>gi|339242463|ref|XP_003377157.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316974060|gb|EFV57598.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 352
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 35/150 (23%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S KV D T +KGYGFV + ++ RA+ +MNG
Sbjct: 123 SDVKVIRDLQTLKSKGYGFVSYVSHDDAERAIEQMNGQWLGRRTIRTNWATRKPGLPAQN 182
Query: 56 ----------SDGKSNNATIFVGALDSNVS--DKDLRELFSHFGEILSVKIPVGKGCGFV 103
+ N T++VG++ +N + DLR +F+ FG IL V++ +G FV
Sbjct: 183 LGQLTFDDVMAQSSPQNTTVYVGSVAANTTGTHDDLRRIFARFGSILEVRVFKQQGYAFV 242
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+F N++ A A+ + GT I +VR SWG
Sbjct: 243 RFDNKESAAHAILNITGTEINGSSVRCSWG 272
>gi|32564504|ref|NP_495123.2| Protein TIAR-1, isoform e [Caenorhabditis elegans]
gi|373219013|emb|CCD65018.1| Protein TIAR-1, isoform e [Caenorhabditis elegans]
Length = 305
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 42/168 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
S++ N L+E F S AKV D+NT +KGYGFV + E RA+ +MNG
Sbjct: 41 SEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGR 100
Query: 57 ---------------------DGKS----------NNATIFVGALDSNVSDKDLRELFSH 85
+ KS +N +++VG + S +++ ++R+ F+
Sbjct: 101 RTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFAS 159
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FG I V+I +G FV+F N+ A A+ ++ +G Q VR SWG
Sbjct: 160 FGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWG 207
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 11/97 (11%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
+FVG L S V ++ LRE F FG++ K+ KG GFV + R++AE A++++
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 119 QGTAIGKQTVRLSWG-HNPGNKQWRGDHINHWNGAHY 154
G +G++T+R +W PG++ + +H+N Y
Sbjct: 94 NGQWLGRRTIRTNWATRKPGDQ----EKPSHYNEKSY 126
>gi|17531965|ref|NP_495121.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
gi|373219010|emb|CCD65015.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
Length = 408
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 42/168 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
S++ N L+E F S AKV D+NT +KGYGFV + E RA+ +MNG
Sbjct: 144 SEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGR 203
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
+ +N +++VG + S +++ ++R+ F+
Sbjct: 204 RTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFAS 262
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FG I V+I +G FV+F N+ A A+ ++ +G Q VR SWG
Sbjct: 263 FGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWG 310
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-----GSDGKSNNAT------- 64
+ ++ KV D G Y FV F D + S+A+ MN + K N A
Sbjct: 71 SVTKTKVIFD---GSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQS 127
Query: 65 ---------IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRK 109
+FVG L S V ++ LRE F FG++ K+ KG GFV + R+
Sbjct: 128 KIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKRE 187
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
+AE A++++ G +G++T+R +W Q + H N
Sbjct: 188 EAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNE 226
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---GKGCGFVQFANRKD 110
NGSD T++VG LDS V++ + LF+ G + K+ FV+F++
Sbjct: 40 NGSDEPR---TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQ 96
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A ALQ + + + ++++W PG +Q + D H+
Sbjct: 97 ASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHF 135
>gi|17531963|ref|NP_495120.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
gi|373219011|emb|CCD65016.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
Length = 376
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 42/168 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
S++ N L+E F S AKV D+NT +KGYGFV + E RA+ +MNG
Sbjct: 112 SEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGR 171
Query: 56 ------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSH 85
+ +N +++VG + S +++ ++R+ F+
Sbjct: 172 RTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFAS 230
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FG I V+I +G FV+F N+ A A+ ++ +G Q VR SWG
Sbjct: 231 FGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWG 278
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
+FVG L S V ++ LRE F FG++ K+ KG GFV + R++AE A++++
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 119 QGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
G +G++T+R +W Q + H N
Sbjct: 165 NGQWLGRRTIRTNWATRKPGDQEKPSHYNE 194
>gi|308480880|ref|XP_003102646.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
gi|308261080|gb|EFP05033.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
Length = 358
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 37/163 (22%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
D++N +L+ TF S AKV D+ T +KGYGFV F ++ A+ MNG
Sbjct: 143 DVSNELLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKR 202
Query: 56 -------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
+ K++N +++VG + ++ DLRE FS +G+I
Sbjct: 203 AVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTETDLRESFSTYGDIA 262
Query: 91 SVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V++ + FV++ ++ A A+ ++ G + VR SWG
Sbjct: 263 EVRVFKTQRYAFVRYDKKECATKAIMEMNGKELTGNQVRCSWG 305
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
+FVG L +VS++ L+ F +GE+ K+ KG GFV F N+++AE A+ +
Sbjct: 135 VFVGDLSKDVSNELLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIAGM 194
Query: 119 QGTAIGKQTVRLSWG 133
G IGK+ VR +W
Sbjct: 195 NGKWIGKRAVRTNWA 209
>gi|156841314|ref|XP_001644031.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
gi|156114664|gb|EDO16173.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 437
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 69/148 (46%), Gaps = 36/148 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F ++ RA+ EM+G DG+ N
Sbjct: 207 ARVIYERGTDRSRGYGYVDFSSKSAAERAVKEMHGKQIDGREINCDMSTSKPAGGNGGDR 266
Query: 64 -------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
T+F+G L N + ELFS GEI+SV++P KG G+VQ
Sbjct: 267 AKKFGDVPSQPSDTLFLGNLSFNADRDQIYELFSKHGEIISVRLPTHPETEQPKGFGYVQ 326
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSW 132
+ N DA+ AL LQG I + VRL +
Sbjct: 327 YGNVNDAQSALDALQGEYIDNRPVRLDF 354
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQ 116
ATIFVG L +V D+ L+ F H G+++ ++ +G G+V F+++ AE A++
Sbjct: 178 ATIFVGRLSWSVDDEWLKNEFEHIGDVIGARVIYERGTDRSRGYGYVDFSSKSAAERAVK 237
Query: 117 KLQGTAI 123
++ G I
Sbjct: 238 EMHGKQI 244
>gi|341903554|gb|EGT59489.1| CBN-TIAR-3 protein [Caenorhabditis brenneri]
Length = 417
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 37/163 (22%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
D++N +L+ TF S AKV D+ T +KGYGFV F ++ A+ MNG
Sbjct: 202 DVSNDLLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKR 261
Query: 56 -------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
+ K++N +++VG + +D DLR+ FS +G+I
Sbjct: 262 AVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDSFSTYGDIA 321
Query: 91 SVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V++ + FV++ ++ A A+ ++ G + VR SWG
Sbjct: 322 EVRVFKTQRYAFVRYDKKECATKAIMEMNGKEMAGNQVRCSWG 364
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
+FVG L +VS+ L+ F +GE+ K+ KG GFV F N+++AE A+ +
Sbjct: 194 VFVGDLSKDVSNDLLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIAGM 253
Query: 119 QGTAIGKQTVRLSWG 133
G IGK+ VR +W
Sbjct: 254 NGKWIGKRAVRTNWA 268
>gi|407927556|gb|EKG20446.1| hypothetical protein MPH_02256 [Macrophomina phaseolina MS6]
Length = 485
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 34/165 (20%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
IT +L++ F A K+ D N +KG YGFV + D RAM +NG
Sbjct: 98 ITEDVLRQIFETAGHVVSVKIIPDKNKFQSKGLNYGFVEYDDPGTAERAMQTLNGRRVHQ 157
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG++ ++
Sbjct: 158 SEIRVNWAYQSNNQPKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGQVSEARVMWDMKT 217
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 218 GRSRGYGFVAFRDRGDAEKALSSMDGEWLGSRAIRCNWANQKGQP 262
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI--------PVGKGCGFVQFANRKD 110
+ N ++VG LD +++ LR++F G ++SVKI G GFV++ +
Sbjct: 83 EPNKRALYVGGLDPRITEDVLRQIFETAGHVVSVKIIPDKNKFQSKGLNYGFVEYDDPGT 142
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
AE A+Q L G + + +R++W + N Q + D NH+
Sbjct: 143 AERAMQTLNGRRVHQSEIRVNWAYQ-SNNQPKEDTSNHF 180
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 15 QETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNV 74
Q + S+ + T YG F +S M+ ++ T +VG L
Sbjct: 261 QPSISQQQAMASMGMTPTTPYGHHHFPTHGVQSYEMVVNQTPQWQT---TCYVGNLTPYT 317
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+ DL LF +FG ++ + +G F++ ++A +A+ +L G + + ++ SWG
Sbjct: 318 TQSDLVPLFQNFGYVVETRFQSDRGFAFIKMDTHENAAMAICQLNGYNVNGRPLKCSWGK 377
Query: 135 N-PGNKQWRG 143
+ P Q+ G
Sbjct: 378 DRPPTGQFDG 387
>gi|363754371|ref|XP_003647401.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891038|gb|AET40584.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
Length = 448
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 36/148 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F D++ +A+ EM G DG+ N
Sbjct: 240 ARVIYERGTERSRGYGYVDFEDKSYAEKAIKEMQGKEIDGRPINVDMSTSKPASNPKEDR 299
Query: 64 -------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
T+F+G L N ++ ELF +G I+SV+IP KG G+VQ
Sbjct: 300 AKKFGDVPSQPSDTLFLGNLSFNADRDNIFELFKDYGSIISVRIPTHPETNQPKGFGYVQ 359
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSW 132
+A+ ++A+ AL KLQG I + VRL +
Sbjct: 360 YASIEEAQKALDKLQGEYIDNRPVRLDF 387
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKD 110
D + ATIFVG L ++ D+ L+ F H G ++S ++ +G G+V F ++
Sbjct: 205 DSPTEPATIFVGRLSWSIDDEWLKTEFEHIGGVISARVIYERGTERSRGYGYVDFEDKSY 264
Query: 111 AEVALQKLQGTAI 123
AE A++++QG I
Sbjct: 265 AEKAIKEMQGKEI 277
>gi|256086132|ref|XP_002579259.1| nucleolysin tia-1 [Schistosoma mansoni]
gi|353232225|emb|CCD79580.1| putative nucleolysin tia-1 [Schistosoma mansoni]
Length = 547
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 36/160 (22%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------- 55
T + K+ D +T KGYGFV + E RA+ MNG
Sbjct: 58 TITECKIIKDMHTQKPKGYGFVAYATRQEAERAIRIMNGQIIGTRAIRTNWAVRKDPADQ 117
Query: 56 -------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGF 102
+ S N TI+VG + + +++K L++ F FGEI ++I KG F
Sbjct: 118 AKDHRPLNYLEVFNASSSTNTTIYVGGITNELTEKLLQDSFKQFGEIKEIRIFKDKGFSF 177
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP--GNKQ 140
++F + A A+ + G +G Q + SWG P NKQ
Sbjct: 178 IRFDSHVAATQAIVTMHGKIVGDQACKCSWGKEPTFTNKQ 217
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVA 114
N+ IFVG L V D+ L FS+FG I KI KG GFV +A R++AE A
Sbjct: 31 NSFHIFVGDLAPEVQDETLLAAFSNFGTITECKIIKDMHTQKPKGYGFVAYATRQEAERA 90
Query: 115 LQKLQGTAIGKQTVRLSWG 133
++ + G IG + +R +W
Sbjct: 91 IRIMNGQIIGTRAIRTNWA 109
>gi|323348433|gb|EGA82678.1| Nsr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 254
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 34/146 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F +++ +A+ EM G DG+ N
Sbjct: 37 ARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK 96
Query: 64 -----------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFA 106
T+F+G L N + ELF+ GE++SV+IP KG G+VQF+
Sbjct: 97 KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFS 156
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSW 132
N +DA+ AL LQG I + VRL +
Sbjct: 157 NMEDAKKALDALQGEYIDNRPVRLDF 182
>gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa]
Length = 249
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 34/146 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F +++ +A+ EM G DG+ N
Sbjct: 32 ARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK 91
Query: 64 -----------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFA 106
T+F+G L N + ELF+ GE++SV+IP KG G+VQF+
Sbjct: 92 KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFS 151
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSW 132
N +DA+ AL LQG I + VRL +
Sbjct: 152 NMEDAKKALDALQGEYIDNRPVRLDF 177
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L++ F H G ++ ++ +G G+V F N+ AE A+Q
Sbjct: 3 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 62
Query: 117 KLQGTAIGKQTV 128
++QG I + +
Sbjct: 63 EMQGKEIDGRPI 74
>gi|67517823|ref|XP_658695.1| hypothetical protein AN1091.2 [Aspergillus nidulans FGSC A4]
gi|40747053|gb|EAA66209.1| hypothetical protein AN1091.2 [Aspergillus nidulans FGSC A4]
Length = 892
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 34/165 (20%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N ++KG YGFV F D RAM +NG
Sbjct: 101 VTEDILKQIFETTGHVISVKIIPDKNQFNSKGANYGFVEFDDPGAAERAMQTLNGRRIHQ 160
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKI 94
+ SN+ IFVG L + V+D+ L + FS FG + +K
Sbjct: 161 SEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 220
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 221 GRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQP 265
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI--------PVGKGCGFVQFANRKD 110
+ N ++VG LD V++ L+++F G ++SVKI G GFV+F +
Sbjct: 86 EPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNQFNSKGANYGFVEFDDPGA 145
Query: 111 AEVALQKLQGTAIGKQTVRLSWGH--NPGNKQWRGDHINH 148
AE A+Q L G I + +R++W + N NK+ D NH
Sbjct: 146 AERAMQTLNGRRIHQSEIRVNWAYQSNTANKE---DTSNH 182
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + D+ LF +FG ++ ++ +G F++ ++A A+ +L G +
Sbjct: 310 TCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYNV 369
Query: 124 GKQTVRLSWGHN 135
+ ++ SWG +
Sbjct: 370 NGRPLKCSWGKD 381
>gi|452819166|gb|EME26242.1| oligouridylate-binding protein, putative [Galdieria sulphuraria]
gi|452825749|gb|EME32744.1| oligouridylate-binding protein, putative [Galdieria sulphuraria]
Length = 309
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 37/163 (22%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
+ +LQE F AKV D NTG + G+GFV F D RAM M+G
Sbjct: 24 VCTELLQEIFELIGPVKLAKVVGDRNTGRSLGFGFVDFYDRPTAIRAMELMHGRRVYGQE 83
Query: 56 ------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP-- 95
+ +N TIFVG L +V ++ L + FS F + KI
Sbjct: 84 IRIDWAHAGAGAAGRILQDEDLANMHTIFVGNLGPDVDEEKLMKAFSSFSSVAGAKISKD 143
Query: 96 ----VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+ G GFV F +KDA++A+Q + G + + +R+ W
Sbjct: 144 VETGLPAGYGFVSFREKKDADLAMQTMTGYILSGRALRIDWAR 186
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 68/185 (36%), Gaps = 56/185 (30%)
Query: 7 SDITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+ L + FS AK++ D TG GYGFV F ++ + AM M G
Sbjct: 118 PDVDEEKLMKAFSSFSSVAGAKISKDVETGLPAGYGFVSFREKKDADLAMQTMTGYILSG 177
Query: 56 -------SDGKSN-------------------------------NATIFVGALDSNVSDK 77
+ GK+ N +++V L S++
Sbjct: 178 RALRIDWARGKNAARGVSTFGSFSSSTVTPKPDIQTIMKQTDPLNVSVYVRGLPSDIDVA 237
Query: 78 DLRELFSHFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
+RE F FG+I VKIP + FV+F + + A A+ + G I V+
Sbjct: 238 AIRESFRGFGDIEDVKIPDAARMTAQDRIYAFVKFKSHEVAARAIHDMHGKEIAGCVVQC 297
Query: 131 SWGHN 135
WG
Sbjct: 298 EWGRE 302
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 53 MNGSDG--KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK-------GCGFV 103
M+G G + + +++VG LD V + L+E+F G + K+ VG G GFV
Sbjct: 1 MSGGSGIYQPSGMSLYVGNLDPRVCTELLQEIFELIGPVKLAKV-VGDRNTGRSLGFGFV 59
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSW 132
F +R A A++ + G + Q +R+ W
Sbjct: 60 DFYDRPTAIRAMELMHGRRVYGQEIRIDW 88
>gi|115491713|ref|XP_001210484.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
gi|114197344|gb|EAU39044.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
Length = 478
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 34/163 (20%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N ++KGY GFV F D RAM +NG
Sbjct: 102 VTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQ 161
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 162 SEIRVNWAYQSNNTNKEDTSNHFHIFVGDLSNEVNDEILLQAFSAFGSVSEARVMWDMKT 221
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 222 GRSRGYGFVAFRERSDAEKALSSMDGEWLGSRAIRCNWANQKG 264
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI--------PVGKGCGFVQFANRKD 110
+ N ++VG LD V++ L+++F G ++SVKI G GFV+F +
Sbjct: 87 EPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGA 146
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
AE A+Q L G I + +R++W + N + D NH+
Sbjct: 147 AERAMQTLNGRRIHQSEIRVNWAYQSNNTN-KEDTSNHF 184
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L S DL LF +FG +L ++ +G F++ + ++A +A+ +L G +
Sbjct: 311 TCYVGNLTPYTSQNDLVPLFQNFGFVLETRLQADRGFAFIKMDSHENAAMAICQLNGYNV 370
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 371 NGRPLKCSWG 380
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 38/160 (23%)
Query: 9 ITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------ 56
IT+ L F ++AKV D G + F+ FGD N+ +A+ MNG
Sbjct: 48 ITDEFLATLFNQIGAVTKAKVCFD---GMNDPFAFIEFGDHNQAGQALQAMNGRSLLDRE 104
Query: 57 -------------DGKSNNAT----IFVGALDSNVSDKDLRELFSHFGEILSVKI----- 94
D + + +FVG L S V LRE F FG++ KI
Sbjct: 105 MRVNWAVDASQPGDSRKQETSRHFHVFVGDLSSEVDSTKLREAFLAFGDVSEAKIIRDTA 164
Query: 95 -PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV + R+DAE A++++ G +G++T+R +W
Sbjct: 165 TNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNWA 204
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 52/178 (29%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
S++ ++ L+E F S AK+ D+ T KGYGFV + + RA+ +MNG
Sbjct: 137 SEVDSTKLREAFLAFGDVSEAKIIRDTATNKAKGYGFVSYPRREDAERAIEQMNGQWLGR 196
Query: 56 ----------------------------------------SDGKSNNATIFVGALDSNVS 75
+ ++N +++VG ++ ++
Sbjct: 197 RTIRTNWATRKPEEEGGGERRDRGERGERRHYEKTFDEIYNQTSADNTSVYVGQINQ-LT 255
Query: 76 DKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+ ++R F FG I V++ +G FV+F ++ A A+ ++ I Q VR SWG
Sbjct: 256 EDEIRRAFDRFGPINEVRMFKVQGYAFVKFEQKEAAARAIVQMNNAEIQGQQVRCSWG 313
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---VGKGCGFVQFANRKDAE 112
+ G + T+FVG LD ++D+ L LF+ G + K+ + F++F + A
Sbjct: 30 ASGSEDPRTLFVGNLDPAITDEFLATLFNQIGAVTKAKVCFDGMNDPFAFIEFGDHNQAG 89
Query: 113 VALQKLQGTAIGKQTVRLSWG 133
ALQ + G ++ + +R++W
Sbjct: 90 QALQAMNGRSLLDREMRVNWA 110
>gi|349578366|dbj|GAA23532.1| K7_Nsr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 416
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 34/146 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F +++ +A+ EM G DG+ N
Sbjct: 199 ARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK 258
Query: 64 -----------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFA 106
T+F+G L N + ELF+ GE++SV+IP KG G+VQF+
Sbjct: 259 KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFS 318
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSW 132
N +DA+ AL LQG I + VRL +
Sbjct: 319 NMEDAKKALDALQGEYIDNRPVRLDF 344
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L++ F H G ++ ++ +G G+V F N+ AE A+Q
Sbjct: 170 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 229
Query: 117 KLQGTAI 123
++QG I
Sbjct: 230 EMQGKEI 236
>gi|6321599|ref|NP_011675.1| Nsr1p [Saccharomyces cerevisiae S288c]
gi|128576|sp|P27476.1|NSR1_YEAST RecName: Full=Nuclear localization sequence-binding protein;
AltName: Full=p67
gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae]
gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]
gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]
gi|285812350|tpg|DAA08250.1| TPA: Nsr1p [Saccharomyces cerevisiae S288c]
gi|392299413|gb|EIW10507.1| Nsr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 414
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 34/146 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F +++ +A+ EM G DG+ N
Sbjct: 197 ARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK 256
Query: 64 -----------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFA 106
T+F+G L N + ELF+ GE++SV+IP KG G+VQF+
Sbjct: 257 KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFS 316
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSW 132
N +DA+ AL LQG I + VRL +
Sbjct: 317 NMEDAKKALDALQGEYIDNRPVRLDF 342
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L++ F H G ++ ++ +G G+V F N+ AE A+Q
Sbjct: 168 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 227
Query: 117 KLQGTAI 123
++QG I
Sbjct: 228 EMQGKEI 234
>gi|259146662|emb|CAY79919.1| Nsr1p [Saccharomyces cerevisiae EC1118]
Length = 414
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 34/146 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F +++ +A+ EM G DG+ N
Sbjct: 197 ARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK 256
Query: 64 -----------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFA 106
T+F+G L N + ELF+ GE++SV+IP KG G+VQF+
Sbjct: 257 KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFS 316
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSW 132
N +DA+ AL LQG I + VRL +
Sbjct: 317 NMEDAKKALDALQGEYIDNRPVRLDF 342
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L++ F H G ++ ++ +G G+V F N+ AE A+Q
Sbjct: 168 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 227
Query: 117 KLQGTAI 123
++QG I
Sbjct: 228 EMQGKEI 234
>gi|190406825|gb|EDV10092.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae RM11-1a]
gi|207345058|gb|EDZ72003.1| YGR159Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272028|gb|EEU07041.1| Nsr1p [Saccharomyces cerevisiae JAY291]
gi|323354844|gb|EGA86677.1| Nsr1p [Saccharomyces cerevisiae VL3]
gi|365765431|gb|EHN06939.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 416
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 34/146 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F +++ +A+ EM G DG+ N
Sbjct: 199 ARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK 258
Query: 64 -----------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFA 106
T+F+G L N + ELF+ GE++SV+IP KG G+VQF+
Sbjct: 259 KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFS 318
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSW 132
N +DA+ AL LQG I + VRL +
Sbjct: 319 NMEDAKKALDALQGEYIDNRPVRLDF 344
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L++ F H G ++ ++ +G G+V F N+ AE A+Q
Sbjct: 170 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 229
Query: 117 KLQGTAI 123
++QG I
Sbjct: 230 EMQGKEI 236
>gi|151943436|gb|EDN61747.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae YJM789]
Length = 418
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 34/146 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F +++ +A+ EM G DG+ N
Sbjct: 201 ARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK 260
Query: 64 -----------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFA 106
T+F+G L N + ELF+ GE++SV+IP KG G+VQF+
Sbjct: 261 KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFS 320
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSW 132
N +DA+ AL LQG I + VRL +
Sbjct: 321 NMEDAKKALDALQGEYIDNRPVRLDF 346
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L++ F H G ++ ++ +G G+V F N+ AE A+Q
Sbjct: 172 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 231
Query: 117 KLQGTAI 123
++QG I
Sbjct: 232 EMQGKEI 238
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 28/150 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
+++T+S L E FS+A +V D N+ + GY +V + + + +RAM +N
Sbjct: 131 ANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEALNFAPLNN 190
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GK 98
S +S +A IF+ LD + +K L + FS FG ILS K+ + K
Sbjct: 191 KPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSK 250
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
G GFVQ+ + A+ A++ L G I + V
Sbjct: 251 GFGFVQYEKEESAQSAMKSLNGMLINDKPV 280
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 39/156 (25%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------- 55
T + A V I + G ++ +GFV F ++ +RA+ E+NG
Sbjct: 326 TITSAVVMIGMD-GKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREM 384
Query: 56 ------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGK 98
+ K +++ LD ++D LRELFS+FG+I S KI V K
Sbjct: 385 DLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSK 444
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
G GFV F+ R++A AL ++ G I + + +++
Sbjct: 445 GSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQ 480
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 33/150 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L +TFS KV +D + G +KG+GFV++ E AM +NG
Sbjct: 221 IDNKTLHDTFSAFGAILSCKVAMD-DIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKP 279
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG---- 97
S K+ +FV L + + +DL ++FS +G I S + +G
Sbjct: 280 VYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGK 339
Query: 98 -KGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
+ GFV F + DA A+++L G I +
Sbjct: 340 SRCFGFVNFESPDDAARAVEELNGKKINDK 369
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG L++NV+D L ELFS G+++SV++ G +V ++N DA A++
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 118 LQGTAIGKQTVRLSWGH-NPGNKQ 140
L + + +R+ + + +P +++
Sbjct: 183 LNFAPLNNKPIRVMYSNRDPSSRR 206
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
IT+ L+E FS K+ D N G +KG GFV F E S+A+ EMNG
Sbjct: 415 ITDDQLRELFSNFGKITSCKIMRDQN-GVSKGSGFVSFSTREEASQALTEMNG 466
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 28/153 (18%)
Query: 9 ITNSILQETFSRAKVTI------DSNTGHTKGYGFVRFGDENERSRA-----MIEMNGSD 57
+T+ I+ E F + + D +G +GYGFV F E + A MI++ G
Sbjct: 30 VTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYAIKIMHMIKLYGKP 89
Query: 58 GKSNNAT-----------IFVGALDSNVSDKDLRELFSHFGEILSVKI---P---VGKGC 100
K N A+ +F+G LD+ + +K L E FS FG ILS KI P V KG
Sbjct: 90 IKVNKASQDKRTQEVGANLFIGNLDTEIDEKTLYETFSAFGHILSTKIMRNPETGVSKGY 149
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV + N + ++ AL + G +G + +R+ +
Sbjct: 150 GFVSYDNFESSDGALTAMNGQFLGTKIIRVEYA 182
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAE 112
++ ATI++G LD V+D + ELF G +++V IP K G GFV+F + +DA+
Sbjct: 15 RNQEATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDAD 74
Query: 113 VALQ-----KLQGTAI 123
A++ KL G I
Sbjct: 75 YAIKIMHMIKLYGKPI 90
>gi|67465872|ref|XP_649094.1| RNA-binding protein TIA-1 [Entamoeba histolytica HM-1:IMSS]
gi|56465456|gb|EAL43711.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449705857|gb|EMD45818.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica KU27]
Length = 306
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 38/164 (23%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS----- 56
++ + +L +TF + A+V + TG +KGYGFV F + + AM MNG
Sbjct: 139 EVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGR 198
Query: 57 ---------------------------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ S N T+++G + NV DL++L + +G I
Sbjct: 199 NIKVNWVTSNIASKTEQPKRSYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSI 258
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V++ KG F++F+ + A A+ G I T+R SWG
Sbjct: 259 EEVRLNKDKGYAFIKFSKHESATSAILMCNGKIINGSTLRCSWG 302
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 23/134 (17%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----DGKSN-----------NAT 64
K+ D + H GYGFV F D A M+G + K N N
Sbjct: 72 CKIMRDKSGVHA-GYGFVEFVDSTTARFAKDNMDGRVVYGRELKVNWSYTAQQENQGNYK 130
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKL 118
IFVG L V+D L + F FG + ++ KG GFV F ++DAE A+Q +
Sbjct: 131 IFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMM 190
Query: 119 QGTAIGKQTVRLSW 132
G + + ++++W
Sbjct: 191 NGEKLEGRNIKVNW 204
>gi|407038416|gb|EKE39116.1| RNA-binding protein TIA-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 38/164 (23%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
++ + +L +TF + A+V + TG +KGYGFV F + + AM MNG
Sbjct: 139 EVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGR 198
Query: 56 --------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
++ S N T+++G + NV DL++L + +G I
Sbjct: 199 NIKVNWVTSNIASKTEQPKRSYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSI 258
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V++ KG F++F+ + A A+ G I T+R SWG
Sbjct: 259 EEVRLNKDKGYAFIKFSKHESATSAILMCNGKIINGSTLRCSWG 302
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 23/134 (17%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----DGKSN-----------NAT 64
K+ D + H GYGFV F D A M+G + K N N
Sbjct: 72 CKIMRDKSGVHA-GYGFVEFVDSTTARFAKDNMDGRVVYGRELKVNWSYTAQQENQGNYK 130
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKL 118
IFVG L V+D L + F FG + ++ KG GFV F ++DAE A+Q +
Sbjct: 131 IFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMM 190
Query: 119 QGTAIGKQTVRLSW 132
G + + ++++W
Sbjct: 191 NGEKLEGRNIKVNW 204
>gi|169768824|ref|XP_001818882.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus oryzae RIB40]
gi|238498168|ref|XP_002380319.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus flavus NRRL3357]
gi|83766740|dbj|BAE56880.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220693593|gb|EED49938.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus flavus NRRL3357]
gi|391874569|gb|EIT83434.1| RRM domain protein [Aspergillus oryzae 3.042]
Length = 477
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N ++KGY GFV F D RAM +NG
Sbjct: 101 VTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQ 160
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKI 94
+ SN+ IFVG L + V+D+ L++ FS FG + +K
Sbjct: 161 SEIRVNWAYQSNSTNKEDTSNHFHIFVGDLSNEVNDEILQQAFSAFGSVSEARVMWDMKT 220
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
+G GFV F +R DA+ AL + G +G + +R +W + G
Sbjct: 221 GRSRGYGFVAFRDRADADKALGSMDGEWLGSRAIRCNWANQKG 263
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI--------PVGKGCGFVQFANRKD 110
+ N ++VG LD V++ L+++F G ++SVKI G GFV+F +
Sbjct: 86 EPNKRALYVGGLDQRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGA 145
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
AE A+Q L G I + +R++W + N + D NH+
Sbjct: 146 AERAMQTLNGRRIHQSEIRVNWAYQ-SNSTNKEDTSNHF 183
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG +L ++ +G F++ + ++A +A+ +L G +
Sbjct: 310 TCYVGNLTPYTTQNDLVPLFQNFGYVLETRLQADRGFAFIKMDSHENAAMAICQLNGYNV 369
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 370 NGRPLKCSWG 379
>gi|388579312|gb|EIM19637.1| hypothetical protein WALSEDRAFT_33897 [Wallemia sebi CBS 633.66]
Length = 423
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 50/179 (27%)
Query: 7 SDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
++ + IL + FS A+V D NTG ++GYGF+ F ++ + +A+ MNG
Sbjct: 115 PEVNDEILSKAFSGFKSISDARVMWDMNTGKSRGYGFLSFREKTDAEQAISTMNGEWLGS 174
Query: 57 ----------------------------------------DGKSNNATIFVGALDSNVSD 76
+ N T+++G L +
Sbjct: 175 RAIRVNWANQKTQTGSHRLNDLMPTMNAFNGPLSYEAVFQQTPAYNTTVYIGNLTPYTTQ 234
Query: 77 KDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
DL +F FG I+ V++ +G FV+ + ++A +A+ +LQGT I + ++ SWG +
Sbjct: 235 ADLVPIFQAFGYIIEVRMQADRGFAFVKLDSHENASMAIVQLQGTLIQGRPIKCSWGRD 293
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 32/158 (20%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHT-KGYGFVRFGDENERSRAMIEMNG------ 55
+T +L E F+ A K+ D N H YGFV + D A+ +NG
Sbjct: 26 VTEYMLTEIFAVAGHVQSVKIIPDRNFSHGGLNYGFVEYTDMRAAETALQTLNGRKIFDT 85
Query: 56 -------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------V 96
+ +N+ +FVG L V+D+ L + FS F I ++
Sbjct: 86 EIRVNWAYQGNNKQEDTTNHFHVFVGDLSPEVNDEILSKAFSGFKSISDARVMWDMNTGK 145
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+G GF+ F + DAE A+ + G +G + +R++W +
Sbjct: 146 SRGYGFLSFREKTDAEQAISTMNGEWLGSRAIRVNWAN 183
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-------GKGCGFVQFANRKDAEVAL 115
A ++VG L V++ L E+F+ G + SVKI G GFV++ + + AE AL
Sbjct: 15 AHLYVGNLSPRVTEYMLTEIFAVAGHVQSVKIIPDRNFSHGGLNYGFVEYTDMRAAETAL 74
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
Q L G I +R++W + NKQ D NH+
Sbjct: 75 QTLNGRKIFDTEIRVNWAYQGNNKQ--EDTTNHF 106
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 28/152 (18%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGK-- 59
D+T ++L E F + +V DS T + GY ++ F + + RA+ +N S K
Sbjct: 58 DVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLNYSPIKGR 117
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK--G 99
S ++V LD N+ +K L + FS FG ILS K+ P GK G
Sbjct: 118 PCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRG 177
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
GFV F + + AE A+ KL G IG++TV ++
Sbjct: 178 FGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 209
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 30/145 (20%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
+I N L +TFS KV + + G ++G+GFV F + A+ ++NG
Sbjct: 146 NIDNKALYDTFSLFGNILSCKVALTPD-GKSRGFGFVHFESDESAEAAIAKLNGMQIGEK 204
Query: 56 -------------SDGKSNNAT-IFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK 98
+DG N T +++ + ++ +++ ++E F FGEI S+ + P G+
Sbjct: 205 TVYVAPFKKTAERNDGTPKNFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGR 264
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI 123
FV +A + A A++++ G +
Sbjct: 265 RFAFVNYAEFEQARAAVEEMDGKDV 289
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK---GCGFVQFANRKDAEVALQ 116
A+++ G L +V++ L E+F+ G + S+++ V + G ++ F N DAE AL
Sbjct: 48 ASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 117 KLQGTAIGKQTVRLSWGH 134
L + I + RL W H
Sbjct: 108 TLNYSPIKGRPCRLMWSH 125
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRKDAEVALQKLQ 119
++V L +V D +L+++F FG + SVK+ V +G GFV F+ ++A A+ +
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 120 GTAIG 124
IG
Sbjct: 437 LKLIG 441
>gi|41055734|ref|NP_956476.1| TIA1 cytotoxic granule-associated RNA binding protein 1 [Danio
rerio]
gi|28277744|gb|AAH45485.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
gi|44890544|gb|AAH66734.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 38/154 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGKS 60
S A+V D TG +KGYGF+ F ++ + A+ +MNG S KS
Sbjct: 123 ISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKS 182
Query: 61 NN---------------------ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG 99
NN T++ G + S +SD+ +R+ FS FG+I+ +++ KG
Sbjct: 183 NNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKG 242
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I TV+ WG
Sbjct: 243 YSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWG 276
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D+ TG+ Y FV F + + A+ MNG
Sbjct: 19 DVTEALILQVFSQIGPCKSCKMILDT-TGNDP-YCFVEFYENRHAAAALAAMNGRKILGK 76
Query: 57 DGKSNNAT--------------IFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
D K N A+ +FVG L +S D+R F+ FG+I ++
Sbjct: 77 DMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGK 136
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GF+ F N+ DAE A+Q++ G +G + +R +W
Sbjct: 137 SKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWA 173
>gi|226480630|emb|CAX73412.1| TIA1 cytotoxic granule-associated RNA binding protein [Schistosoma
japonicum]
Length = 651
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 36/160 (22%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------- 55
T + K+ D +T KGYGFV + E RA+ MNG
Sbjct: 182 TITECKIIKDMHTQKPKGYGFVAYATRQEAERAIRIMNGQIIGSRAIRTNWAVRKDPADQ 241
Query: 56 -------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGF 102
+ + N TI+VG + + +++K L++ F FGEI ++I KG F
Sbjct: 242 AKDHRPLNYLEVFNASSAANTTIYVGGITNELTEKLLQDSFKQFGEIKEIRIFKDKGFSF 301
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP--GNKQ 140
V+F + A A+ + G +G Q + SWG P NKQ
Sbjct: 302 VRFDSHVAATQAIVTMHGKIVGDQACKCSWGKEPTFTNKQ 341
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
IFVG L V D+ L FS+FG I KI KG GFV +A R++AE A++ +
Sbjct: 159 IFVGDLAPEVQDETLLAAFSNFGTITECKIIKDMHTQKPKGYGFVAYATRQEAERAIRIM 218
Query: 119 QGTAIGKQTVRLSWG 133
G IG + +R +W
Sbjct: 219 NGQIIGSRAIRTNWA 233
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 28/152 (18%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGK-- 59
D+T ++L E F + +V DS T + GY ++ F + + RA+ +N S K
Sbjct: 58 DVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLNYSPIKGR 117
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK--G 99
S ++V LD N+ +K L + FS FG ILS K+ P GK G
Sbjct: 118 PCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRG 177
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
GFV F + + AE A+ KL G IG++TV ++
Sbjct: 178 FGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 209
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 30/145 (20%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
+I N L +TFS KV + + G ++G+GFV F + A+ ++NG
Sbjct: 146 NIDNKALYDTFSLFGNILSCKVALTPD-GKSRGFGFVHFESDESAEAAIAKLNGMQIGEK 204
Query: 56 -------------SDGKSNNAT-IFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK 98
+DG N T +++ + ++ +++ ++E F FGEI S+ + P G+
Sbjct: 205 TVYVAPFKKTAERNDGTPKNFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGR 264
Query: 99 GCGFVQFANRKDAEVALQKLQGTAI 123
FV +A + A A++++ G +
Sbjct: 265 RFAFVNYAEFEQARAAVEEMDGKDV 289
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK---GCGFVQFANRKDAEVALQ 116
A+++ G L +V++ L E+F+ G + S+++ V + G ++ F N DAE AL
Sbjct: 48 ASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 117 KLQGTAIGKQTVRLSWGH 134
L + I + RL W H
Sbjct: 108 TLNYSPIKGRPCRLMWSH 125
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRKDAEVALQKLQ 119
++V L +V D +L+++F FG + SVK+ V +G GFV F+ ++A A+ +
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 120 GTAIG 124
IG
Sbjct: 437 LKLIG 441
>gi|291234161|ref|XP_002737018.1| PREDICTED: RNA binding motif protein 16-like [Saccoglossus
kowalevskii]
Length = 1381
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ TIF+G L +KD++E+F FG+I S+ I +GC FV R+D+ ALQKL+
Sbjct: 509 STTIFLGHLAKATGEKDIKEIFEEFGQIQSIDIIPPRGCAFVCMEQRQDSHKALQKLKNL 568
Query: 122 AIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
+ T+++SW N G K ++ +W+
Sbjct: 569 KLHGNTIKMSWATNKGTKG--AEYKKYWD 595
>gi|37681959|gb|AAQ97857.1| TIA1 cytotoxic granule-associated RNA binding protein [Danio rerio]
gi|160773363|gb|AAI55270.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 38/154 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGKS 60
S A+V D TG +KGYGF+ F ++ + A+ +MNG S KS
Sbjct: 123 ISDARVVRDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKS 182
Query: 61 NN---------------------ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG 99
NN T++ G + S +SD+ +R+ FS FG+I+ +++ KG
Sbjct: 183 NNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKG 242
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I TV+ WG
Sbjct: 243 YSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWG 276
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D+ TG+ Y FV F + + A+ MNG
Sbjct: 19 DVTEALILQVFSQIGPCKSCKMILDT-TGNDP-YCFVEFYENRHAAAALAAMNGRKILGK 76
Query: 57 DGKSNNAT--------------IFVGALDSNVSDKDLRELFSHFGEILSVKIP------V 96
D K N A+ +FVG L +S D+R F+ FG+I ++
Sbjct: 77 DMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVRDLATGK 136
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GF+ F N+ DAE A+Q++ G +G + +R +W
Sbjct: 137 SKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWA 173
>gi|440635298|gb|ELR05217.1| hypothetical protein GMDG_01655 [Geomyces destructans 20631-21]
Length = 503
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 34/163 (20%)
Query: 9 ITNSILQETF------SRAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N G +KG YGFV + D RAM +NG
Sbjct: 100 VTEDVLRQIFETTGHVQNVKIIPDKNVGASKGFNYGFVEYDDPGAAERAMQTLNGRRVHQ 159
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKI 94
+ SN+ IFVG L + V+D+ L + F FG + +K
Sbjct: 160 AEIRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFCAFGSVSEARVMWDMKT 219
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
+G GFV F R+DAE AL + G +G + +R +W + G
Sbjct: 220 GRSRGYGFVAFRERQDAEKALSSMDGEWLGSRAIRCNWANQKG 262
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC--------GFVQFANRKDAE 112
N ++VG LD V++ LR++F G + +VKI K GFV++ + AE
Sbjct: 87 NKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNVGASKGFNYGFVEYDDPGAAE 146
Query: 113 VALQKLQGTAIGKQTVRLSWGH--NPGNKQWRGDHINHWNG 151
A+Q L G + + +R++W + N NK+ +H + + G
Sbjct: 147 RAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFVG 187
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 15 QETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNV 74
Q + S+ + + + T +G F +S MI ++ T++VG L
Sbjct: 263 QPSISQQQSMVSTGLTPTTPFGHHHFPTHGVQSYDMIVQQTPQWQT---TVYVGNLTPYT 319
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+ DL LF +FG ++ + +G FV+ ++A +A+ +L G + + ++ SWG
Sbjct: 320 TQNDLVPLFQNFGYVVETRFQSDRGFAFVKMDTHENAAMAICQLSGYNVNGRPLKCSWGK 379
Query: 135 NPGNKQ 140
+ Q
Sbjct: 380 DKAPSQ 385
>gi|331220241|ref|XP_003322796.1| hypothetical protein PGTG_04333 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301786|gb|EFP78377.1| hypothetical protein PGTG_04333 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 666
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
N + ++ T+FV L + +++ L+ F +FGEI VKIP KG GFV++ R+DA+
Sbjct: 141 NSPNDDPSSTTVFVAGLPACITEDTLKTFFQNFGEIAYVKIPPHKGYGFVKYVRREDAKQ 200
Query: 114 ALQKLQGTAIGKQT-VRLSWGHNPGNKQ 140
A+ K+ I +++ +RLSWG + G+K+
Sbjct: 201 AIIKMNDFPIHEKSRIRLSWGRSLGDKK 228
>gi|432868074|ref|XP_004071398.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oryzias latipes]
Length = 359
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L +S KD+ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 128 VSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNG 187
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 188 QKPLGAAEPITVKFANNPSQK 208
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 338 NGYRLGDRVLQVSF 351
>gi|125600441|gb|EAZ40017.1| hypothetical protein OsJ_24455 [Oryza sativa Japonica Group]
Length = 323
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 7/58 (12%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
SD+T+S+L+E F AKV D TG +KGYGFVRFGDENE++RAM EMNG+
Sbjct: 231 ASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMNGA 288
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------- 55
+ + + + KV + +GH++GYGF+ F A+ NG
Sbjct: 149 APMGQQVTSVKVIRNKQSGHSEGYGFIEFQSHAAAEYALANFNGRMMLNVDQLFKLNWAS 208
Query: 56 ---------SDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKG 99
DG + TIFVG L S+V+D L E F + + + K+ KG
Sbjct: 209 SGAGERRAADDGPEH--TIFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKG 266
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
GFV+F + + A+ ++ G + + +RL
Sbjct: 267 YGFVRFGDENEQTRAMTEMNGATLSTRQMRL 297
>gi|410902665|ref|XP_003964814.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L +S KD+ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 128 VSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNG 187
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 188 QKPLGAAEPITVKFANNPSQK 208
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 35 YGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
YG RF ++ S A + + G G IFV L + L +LF FG + +
Sbjct: 246 YGVKRFSPITIDSMTSLAGVNLTGPTGA--GWCIFVYNLSPEADESVLWQLFGPFGAVTN 303
Query: 92 VKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
VK+ KG GFV N +A +A+ L G +G + +++S+
Sbjct: 304 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 350
>gi|18463972|gb|AAL73053.1| HUC [Sphoeroides nephelus]
Length = 356
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 66 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 125
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L +S KD+ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 126 VSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNG 185
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 186 QKPLGAAEPITVKFANNPSQK 206
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 35 YGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
YG RF ++ S A + + G G IFV L + L +LF FG + +
Sbjct: 244 YGVKRFSPITIDSMTSLAGVNLTGPTGA--GWCIFVYNLSPEADESVLWQLFGPFGAVTN 301
Query: 92 VKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
VK+ KG GFV N +A +A+ L G +G + +++S+
Sbjct: 302 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 348
>gi|47220048|emb|CAG12196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 66 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 125
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L +S KD+ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 126 VSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNG 185
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 186 QKPLGAAEPITVKFANNPSQK 206
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 282 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 341
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 342 NGYRLGDRVLQVSF 355
>gi|125558527|gb|EAZ04063.1| hypothetical protein OsI_26200 [Oryza sativa Indica Group]
Length = 323
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 7/58 (12%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
SD+T+S+L+E F AKV D TG +KGYGFVRFGDENE++RAM EMNG+
Sbjct: 231 ASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMNGA 288
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------- 55
+ + + + KV + +GH++GYGF+ F A+ NG
Sbjct: 149 APMGQQVTSVKVIRNKQSGHSEGYGFIEFQSHAAAEYALANFNGRMMLNVDQLFKLNWAS 208
Query: 56 ---------SDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKG 99
DG + TIFVG L S+V+D L E F + + + K+ KG
Sbjct: 209 SGAGERRAADDGPEH--TIFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKG 266
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
GFV+F + + A+ ++ G + + +RL
Sbjct: 267 YGFVRFGDENEQTRAMTEMNGATLSTRQMRL 297
>gi|348509181|ref|XP_003442130.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oreochromis
niloticus]
gi|410902663|ref|XP_003964813.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Takifugu rubripes]
gi|432868072|ref|XP_004071397.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oryzias latipes]
Length = 345
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L +S KD+ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 128 VSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNG 187
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 188 QKPLGAAEPITVKFANNPSQK 208
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 31 HTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
T+ + F ++ S A + + G G IFV L + L +LF FG +
Sbjct: 232 QTQRFRFSPITIDSMTSLAGVNLTGPTGA--GWCIFVYNLSPEADESVLWQLFGPFGAVT 289
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+VK+ KG GFV N +A +A+ L G +G + +++S+
Sbjct: 290 NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 337
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 33/166 (19%)
Query: 7 SDITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+ I N LQETF+ KV +D+N G +KGYGFV+F +E A+ +NG
Sbjct: 120 TSIDNKALQETFASFGPVLSCKVAVDNN-GQSKGYGFVQFENEEAAQSAINRLNGMLIND 178
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----- 94
+ G ++V L SD+DL++ FS++G I S +
Sbjct: 179 KEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQS 238
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
KG GFV F + A A++KL GT + + G ++
Sbjct: 239 GKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGERE 284
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 22/129 (17%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNG------------SDGKSNNAT 64
+V D + GY +V F + + + AM +NG S KS +A
Sbjct: 53 RVCRDQARRASLGYAYVNFSNPQDAANAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHAN 112
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 119
+F+ LD+++ +K L+E F+ FG +LS K+ V KG GFVQF N + A+ A+ +L
Sbjct: 113 VFIKNLDTSIDNKALQETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLN 172
Query: 120 GTAIGKQTV 128
G I + V
Sbjct: 173 GMLINDKEV 181
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 38/144 (26%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------- 57
+ + + +G +KG+GFV F + + A+ ++NG+
Sbjct: 230 SAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKA 289
Query: 58 ----------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGF 102
K A +++ LD + D+ L+ELFS FG I S K+ + KG GF
Sbjct: 290 RFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGF 349
Query: 103 VQFANRKDAEVALQKLQGTAIGKQ 126
V F+ ++A AL + G IGK+
Sbjct: 350 VAFSTPEEASRALNGMNGKMIGKK 373
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDA 111
G+ N++++VG L+ NV++ L +LFS +++S+++ G +V F+N +DA
Sbjct: 18 GQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDA 77
Query: 112 EVALQKLQGTAIGKQTVRLSWGH 134
A++ L T + + +R+ H
Sbjct: 78 ANAMELLNFTPLNGKAIRIMVSH 100
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 28/150 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
+++T+S L E FS+A +V D N+ + GY +V + + + +RAM +N
Sbjct: 131 ANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEALNFAPLNN 190
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GK 98
S +S +A IF+ LD + +K L + FS FG ILS K+ + K
Sbjct: 191 KPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSK 250
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
G GFVQ+ + A+ A++ L G I + V
Sbjct: 251 GFGFVQYEKEESAQSAMKSLNGMLINDKPV 280
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 39/156 (25%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------- 55
T + A V I + G ++ +GFV F ++ +RA+ E+NG
Sbjct: 326 TITSAVVMIGMD-GKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREM 384
Query: 56 ------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGK 98
+ K +++ LD ++D LRELFS+FG+I S KI V K
Sbjct: 385 DLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSK 444
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
G GFV F+ R++A AL ++ G I + + +++
Sbjct: 445 GSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQ 480
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 33/150 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L +TFS KV +D + G +KG+GFV++ E AM +NG
Sbjct: 221 IDNKTLHDTFSAFGAILSCKVAMD-DIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKP 279
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG---- 97
S K+ +FV L + + +DL ++FS +G I S + +G
Sbjct: 280 VYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGK 339
Query: 98 -KGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
+ GFV F + DA A+++L G I +
Sbjct: 340 SRCFGFVNFESPDDAARAVEELNGKKINDK 369
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG L++NV+D L ELFS G+++SV++ G +V ++N DA A++
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 118 LQGTAIGKQTVRLSWGH-NPGNKQ 140
L + + +R+ + + +P +++
Sbjct: 183 LNFAPLNNKPIRVMYSNRDPSSRR 206
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
IT+ L+E FS K+ D N G +KG GFV F E S+A+ EMNG
Sbjct: 415 ITDDQLRELFSNFGKITSCKIMRDQN-GVSKGSGFVSFSTREEASQALTEMNG 466
>gi|358254799|dbj|GAA56358.1| nucleolysin TIA-1 isoform p40 [Clonorchis sinensis]
Length = 508
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 40/169 (23%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
DI +L F + K+ D +T KGYGFV + E RA+ MNG
Sbjct: 46 DIEGDVLLAAFNTFGNVTECKIIKDMHTQKPKGYGFVAYKSREEAERAIQVMNGQILGSR 105
Query: 56 ----------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFG 87
+ ++N TI+VG + S +++ L+ F FG
Sbjct: 106 AIRTNWAVRRDPADQAKDHRPLNYVEVFNASSASNTTIYVGGITSGLTELLLQNAFQEFG 165
Query: 88 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136
EI ++I KG F++F + A A+ + G +G Q+ + SWG P
Sbjct: 166 EIKEIRIFKEKGFSFIRFDSHAAATRAIVTMHGRLVGDQSCKCSWGKEP 214
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
IFVG L ++ L F+ FG + KI KG GFV + +R++AE A+Q +
Sbjct: 38 IFVGDLAPDIEGDVLLAAFNTFGNVTECKIIKDMHTQKPKGYGFVAYKSREEAERAIQVM 97
Query: 119 QGTAIGKQTVRLSWG 133
G +G + +R +W
Sbjct: 98 NGQILGSRAIRTNWA 112
>gi|18858615|ref|NP_571524.1| ELAV-like protein 3 [Danio rerio]
gi|1683635|gb|AAB36515.1| zHuC [Danio rerio]
Length = 345
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L +S KD+ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 128 VSGLPKTMSQKDMEQLFSQYGRIITSRILVNQVTGISRGVGFIRFDKRNEAEEAIKGLNG 187
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 188 QKPLGAAEPITVKFANNPSQK 208
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 31 HTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
T+ + F ++ S A + + G G IFV L + L +LF FG +
Sbjct: 232 QTQRFRFSPITIDSMTSLAGVNLTGPTGA--GWCIFVYNLSPEADESVLWQLFGPFGAVT 289
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+VK+ KG GFV N +A +A+ L G +G + +++S+
Sbjct: 290 NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 337
>gi|297725721|ref|NP_001175224.1| Os07g0516900 [Oryza sativa Japonica Group]
gi|255677810|dbj|BAH93952.1| Os07g0516900, partial [Oryza sativa Japonica Group]
Length = 92
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 7/58 (12%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
SD+T+S+L+E F AKV D TG +KGYGFVRFGDENE++RAM EMNG+
Sbjct: 2 ASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMNGA 59
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 50/191 (26%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------ 56
I S L+E FS +V D+ T +KGYGFV F ++ + A+ M+GS
Sbjct: 115 IETSDLREAFSPFGEISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHTMDGSWLGSRA 174
Query: 57 ---------------------------------DGKSNNATIFVGALDSNVSDKD-LREL 82
+N T++ G L+ S +D LR+
Sbjct: 175 IRTNWASRKPNHKETGSYIGGHHRALNYDEVFAQSSPSNCTVYCGGLNQMASSEDFLRQA 234
Query: 83 FSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG--HNPGNKQ 140
F FGEI+ +++ KG F++F +++ A A+ + IG Q V+ SWG P Q
Sbjct: 235 FDEFGEIVDIRLFKDKGYAFIKFNSKESACRAIVARHNSDIGGQAVKCSWGKEQEPAQPQ 294
Query: 141 WRGD--HINHW 149
+ D +N+W
Sbjct: 295 FPYDPYQMNYW 305
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 32/172 (18%)
Query: 7 SDITNSILQETFSRAKVTIDSNTGHTKG---YGFVRFGDENERSRAMIEMN-----GSDG 58
S +T ++ FS+ H G Y FV F + ++ S A+ MN G +
Sbjct: 22 SGVTEDLVCALFSQMGQIKGCKIIHEPGSDPYCFVEFVNHSDASSAITAMNARMCLGREL 81
Query: 59 KSNNAT------------------IFVGALDSNVSDKDLRELFSHFGEILSVKI------ 94
+ N A+ IFVG L + DLRE FS FGEI ++
Sbjct: 82 RVNWASSAIQQQTPHRPDTSKHHHIFVGDLSPQIETSDLREAFSPFGEISDCRVVKDATT 141
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHI 146
KG GFV F N++DAE A+ + G+ +G + +R +W N + G +I
Sbjct: 142 QKSKGYGFVSFTNKQDAENAIHTMDGSWLGSRAIRTNWASRKPNHKETGSYI 193
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGKGCGFVQFANRKDAEVALQKLQG 120
T++VG LDS V++ + LFS G+I KI P FV+F N DA A+ +
Sbjct: 14 TLYVGNLDSGVTEDLVCALFSQMGQIKGCKIIHEPGSDPYCFVEFVNHSDASSAITAMNA 73
Query: 121 TAIGKQTVRLSWG 133
+ +R++W
Sbjct: 74 RMCLGRELRVNWA 86
>gi|338727192|ref|XP_001916382.2| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Equus
caballus]
Length = 345
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 25/160 (15%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D N+ +A+ +NG S +A +
Sbjct: 71 CKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANL 130
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 131 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 190
Query: 120 GTAI--GKQTVRLSWGHNPGNK--QWRGDHINHWNGAHYG 155
G + + + + +NP K Q H+ + YG
Sbjct: 191 GQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYG 230
>gi|134077058|emb|CAK39931.1| unnamed protein product [Aspergillus niger]
Length = 497
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 34/165 (20%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N ++KGY GFV F D RAM +NG
Sbjct: 102 VTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQ 161
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 162 SEIRVNWAYQSNSTNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 221
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DA+ AL + G +G + +R +W + G
Sbjct: 222 GRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQKGQP 266
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI--------PVGKGCGFVQFANRKD 110
+ N ++VG LD V++ L+++F G ++SVKI G GFV+F +
Sbjct: 87 EPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGA 146
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
AE A+Q L G I + +R++W + N + D NH+
Sbjct: 147 AERAMQTLNGRRIHQSEIRVNWAYQ-SNSTNKEDTSNHF 184
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ ++ +G F++ ++A +A+ +L G +
Sbjct: 311 TCYVGNLTPYTTQTDLVPLFQNFGYVIETRLQADRGFAFIKMDTHENAAMAICQLNGYNV 370
Query: 124 GKQTVRLSWGHN 135
+ ++ SWG +
Sbjct: 371 NGRPLKCSWGKD 382
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 28/150 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
+ +T+S L E FS+A +V D T + GYG+V + + SRA+ E+N
Sbjct: 48 ATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNG 107
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GK 98
S KS IF+ LD ++ K L E FS FG ILS K+ V K
Sbjct: 108 RAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSK 167
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
G GFVQ+ + A+ A+ KL G + + V
Sbjct: 168 GYGFVQYDTDEAAQRAIDKLNGMLLNDKQV 197
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 38/158 (24%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------------- 55
V + G +KG+GFV F + ++ +RA+ +NG
Sbjct: 248 VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKF 307
Query: 56 ------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGFVQ 104
+ KS + ++V LD +V+D LRE F+ FG I S K+ P G +G GFV
Sbjct: 308 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPTGVSRGSGFVA 367
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
F+ ++A A+ ++ G I + + ++ +++ R
Sbjct: 368 FSTPEEASRAITEMNGKMIVTKPLYVALAQRKEDRKAR 405
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L ETFS KV +D +G +KGYGFV++ + RA+ ++NG
Sbjct: 138 IDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQ 196
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PV 96
S K ++V L ++SD++L ++F FG S I
Sbjct: 197 VYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK 256
Query: 97 GKGCGFVQFANRKDAEVALQKLQG 120
KG GFV F N DA A+ L G
Sbjct: 257 SKGFGFVNFENSDDAARAVDALNG 280
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAE 112
+ +++VG LD+ V+D L E FS G+++SV++ G G+V +A +DA
Sbjct: 35 QQGTTSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 94
Query: 113 VALQKLQGTAIGKQTVRLSW 132
AL +L A+ + +R+ +
Sbjct: 95 RALNELNFMALNGRAIRVMY 114
>gi|348509183|ref|XP_003442131.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oreochromis
niloticus]
Length = 359
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 24/142 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV-------GKGCGFVQFANRKDAEVALQKLQ 119
V L +S KD+ +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 VSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPLGAAEPITVKFANNPSQK 209
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 35 YGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
YG RF ++ S A + + G G IFV L + L +LF FG + +
Sbjct: 247 YGVKRFSPITIDSMTSLAGVNLTGPTGA--GWCIFVYNLSPEADESVLWQLFGPFGAVTN 304
Query: 92 VKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
VK+ KG GFV N +A +A+ L G +G + +++S+
Sbjct: 305 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
>gi|317030432|ref|XP_001392545.2| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus niger CBS 513.88]
Length = 478
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 34/165 (20%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N ++KGY GFV F D RAM +NG
Sbjct: 102 VTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQ 161
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 162 SEIRVNWAYQSNSTNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 221
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DA+ AL + G +G + +R +W + G
Sbjct: 222 GRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQKGQP 266
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI--------PVGKGCGFVQFANRKD 110
+ N ++VG LD V++ L+++F G ++SVKI G GFV+F +
Sbjct: 87 EPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGA 146
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
AE A+Q L G I + +R++W + N + D NH+
Sbjct: 147 AERAMQTLNGRRIHQSEIRVNWAYQ-SNSTNKEDTSNHF 184
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ ++ +G F++ ++A +A+ +L G +
Sbjct: 311 TCYVGNLTPYTTQTDLVPLFQNFGYVIETRLQADRGFAFIKMDTHENAAMAICQLNGYNV 370
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 371 NGRPLKCSWG 380
>gi|40807107|gb|AAH65343.1| Elavl3 protein [Danio rerio]
Length = 359
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 24/142 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV-------GKGCGFVQFANRKDAEVALQKLQ 119
V L +S KD+ +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 VSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPLGAAEPITVKFANNPSQK 209
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 35 YGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
YG RF ++ S A + + G G IFV L + L +LF FG + +
Sbjct: 247 YGVKRFSPITIDSMTSLAGVNLTGPTGA--GWCIFVYNLSPEADESVLWQLFGPFGAVTN 304
Query: 92 VKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
VK+ KG GFV N +A +A+ L G +G + +++S+
Sbjct: 305 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
>gi|358371808|dbj|GAA88414.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus kawachii IFO 4308]
Length = 478
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 34/165 (20%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N ++KGY GFV F D RAM +NG
Sbjct: 102 VTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQ 161
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 162 SEIRVNWAYQSNSTNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 221
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DA+ AL + G +G + +R +W + G
Sbjct: 222 GRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQKGQP 266
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI--------PVGKGCGFVQFANRKD 110
+ N ++VG LD V++ L+++F G ++SVKI G GFV+F +
Sbjct: 87 EPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGA 146
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
AE A+Q L G I + +R++W + N + D NH+
Sbjct: 147 AERAMQTLNGRRIHQSEIRVNWAYQ-SNSTNKEDTSNHF 184
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ ++ +G F++ ++A +A+ +L G +
Sbjct: 311 TCYVGNLTPYTTQTDLVPLFQNFGYVIETRLQADRGFAFIKMDTHENAAMAICQLNGYNV 370
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 371 NGRPLKCSWG 380
>gi|148666752|gb|EDK99168.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_b
[Mus musculus]
Length = 293
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
F A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 39 FRDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 98
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S NN T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 99 TYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 158
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 159 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 191
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
YC S +T ++++TFS ++ KGY FVRF + A++ +NG+
Sbjct: 124 YCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGT 179
>gi|34395215|dbj|BAC83714.1| RNA Binding Protein-like [Oryza sativa Japonica Group]
gi|50508741|dbj|BAD31317.1| RNA Binding Protein-like [Oryza sativa Japonica Group]
Length = 206
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 7/58 (12%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
SD+T+S+L+E F AKV D TG +KGYGFVRFGDENE++RAM EMNG+
Sbjct: 116 ASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMNGA 173
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 34/149 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------------S 56
KV + +GH++GYGF+ F A+ NG
Sbjct: 44 KVIRNKQSGHSEGYGFIEFQSHAAAEYALANFNGRMMLNVDQLFKLNWASSGAGERRAAD 103
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
DG + TIFVG L S+V+D L E F + + + K+ KG GFV+F +
Sbjct: 104 DGPEH--TIFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDEN 161
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
+ A+ ++ G + + +RL N N
Sbjct: 162 EQTRAMTEMNGATLSTRQMRLGPAANKKN 190
>gi|542846|pir||JC2116 hippocampal 38K autoantigen protein - human
gi|2340828|dbj|BAA21838.1| PLE21 protein [Homo sapiens]
Length = 350
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 60 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 119
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 120 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 179
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
++ + + + +NP K
Sbjct: 180 QKPLGAREPITVKFANNPSQK 200
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRK 109
S G + IFV L L +LF FG + +VK+ KG GF+ N
Sbjct: 260 SGGAAGGWCIFVYNLSPEPDQSVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFMTMTNYD 319
Query: 110 DAEVALQKLQGTAIGKQTVRLSW 132
+A +A+ L G +G++ +++S+
Sbjct: 320 EAAMAIASLNGYRLGQRVLQVSF 342
>gi|431895395|gb|ELK04911.1| Nucleolysin TIAR [Pteropus alecto]
Length = 428
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 37/152 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 177 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 236
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG
Sbjct: 237 QENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYS 296
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F+ + A A+ + GTAI V+ WG
Sbjct: 297 FVRFSTHESAAHAIVSVNGTAIEGHVVKCYWG 328
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 25/124 (20%)
Query: 35 YGFVRFGDENERSRAMIEMNGSD--GK-----------------SNNATIFVGALDSNVS 75
Y FV F + + + A+ MNG GK SN+ +FVG L ++
Sbjct: 103 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 162
Query: 76 DKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129
+D++ F+ FG+I ++ KG GFV F N+ DAE A+ + G +G + +R
Sbjct: 163 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 222
Query: 130 LSWG 133
+W
Sbjct: 223 TNWA 226
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 261 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTAIEG 320
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 321 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 348
>gi|254585491|ref|XP_002498313.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
gi|238941207|emb|CAR29380.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
Length = 468
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 36/148 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + + ++GYG+V F D++ +A+ EM+G DG+ N
Sbjct: 265 ARVIYERGSTRSRGYGYVDFTDKSYAEKAVKEMHGKELDGRPINCDMSTSKPTVNPREDR 324
Query: 64 -------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
T+F+G L N + ELFS GE++SV+IP KG G+VQ
Sbjct: 325 AKRFGDMPSEPSDTLFLGNLSFNADRDQIYELFSPHGEVISVRIPTHPETEQPKGFGYVQ 384
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSW 132
+A+ A+ AL+ LQG I + VRL +
Sbjct: 385 YASVDSAQKALETLQGEYIDNRPVRLDF 412
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------P 95
+E E S +++G ATIFVG L N+ D+ L+ F H G + S ++
Sbjct: 220 EEQEESSKKAKLSG-----EPATIFVGRLSWNIDDQWLKNEFEHIGGVQSARVIYERGST 274
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAI 123
+G G+V F ++ AE A++++ G +
Sbjct: 275 RSRGYGYVDFTDKSYAEKAVKEMHGKEL 302
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 33/166 (19%)
Query: 7 SDITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+ I N LQETF+ KV +D+N G +KGYGFV+F +E A+ +NG
Sbjct: 130 TSIDNKALQETFASFGSVLSCKVAVDNN-GQSKGYGFVQFENEEAAQSAINRLNGMLIND 188
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----- 94
+ G ++V L SD+DL++ FS++G I S +
Sbjct: 189 KEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQS 248
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
KG GFV F + A A++KL GT + + G ++
Sbjct: 249 GKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGERE 294
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 22/129 (17%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNG------------SDGKSNNAT 64
+V D + GY +V F + + S AM +NG S KS +A
Sbjct: 63 RVCRDQARRASLGYAYVNFSNPQDASNAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHAN 122
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 119
+F+ LD+++ +K L+E F+ FG +LS K+ V KG GFVQF N + A+ A+ +L
Sbjct: 123 VFIKNLDTSIDNKALQETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLN 182
Query: 120 GTAIGKQTV 128
G I + V
Sbjct: 183 GMLINDKEV 191
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 38/144 (26%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------- 57
+ + + +G +KG+GFV F + + A+ ++NG+
Sbjct: 240 SAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKA 299
Query: 58 ----------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGF 102
K A +++ LD + D+ L+ELFS FG I S K+ + KG GF
Sbjct: 300 RFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGF 359
Query: 103 VQFANRKDAEVALQKLQGTAIGKQ 126
V F+ ++A AL + G IGK+
Sbjct: 360 VAFSTPEEASRALNGMNGKMIGKK 383
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDA 111
G+ N++++VG L+ NV++ L +LFS +++S+++ G +V F+N +DA
Sbjct: 28 GQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDA 87
Query: 112 EVALQKLQGTAIGKQTVRLSWGH 134
A++ L T + + +R+ H
Sbjct: 88 SNAMELLNFTPLNGKAIRIMVSH 110
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+T ++L E F + +V DS T + GY +V F + + RA+ +N S
Sbjct: 44 DVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDTLNYSPIRGK 103
Query: 58 -------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
K+ NA +FV LD + +K L + FS FG ILS K+ +G
Sbjct: 104 QCRIMWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFGNILSCKVATDDDGKSRG 163
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F N + A A+ KL G IG++ V
Sbjct: 164 YGFVHFENDESAHKAITKLNGMMIGEKAV 192
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEV 113
+ + ++V L +V D+ LR++F FGEI S K+ V +G GFV FAN+ D E
Sbjct: 336 NQSCNLYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEK 395
Query: 114 ALQKLQ 119
A+Q +
Sbjct: 396 AIQAMH 401
Score = 42.4 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 34/151 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L +TFS KV D + G ++GYGFV F ++ +A+ ++NG
Sbjct: 133 IDNKALYDTFSLFGNILSCKVATDDD-GKSRGYGFVHFENDESAHKAITKLNGMMIGEKA 191
Query: 56 ----------------SDGKSNNATIFVGAL-DSNVSDKDLRELFSHFGEILSVKIPV-- 96
D +++ L +S +++D+++ F FG+I SV I
Sbjct: 192 VYVGPFQKHAERAEQHGDEPRKFTNVYIKHLPESWTTEEDVQKAFEEFGKITSVAIQTDR 251
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
G+ FV + + A A++ + G + Q
Sbjct: 252 KGRRFAFVNYEDFDSAAKAVEAMNGKDMRTQ 282
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQ 116
A+++VG L +V++ L E+F+ G + S+++ G +V F N DAE AL
Sbjct: 34 ASLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALD 93
Query: 117 KLQGTAIGKQTVRLSWGH 134
L + I + R+ W H
Sbjct: 94 TLNYSPIRGKQCRIMWSH 111
>gi|444525484|gb|ELV14031.1| ELAV-like protein 3 [Tupaia chinensis]
Length = 332
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 61 KLVRDKITGQSLGYGFVNYSDPNDADKAISTLNGLKLQTKTIKVSYARPSSASIRDANLY 120
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 121 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 180
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 181 QKPLGAAEPITVKFANNPSQK 201
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 28/150 (18%)
Query: 7 SDITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DG 58
S++T+S L + F + +V D +T + GYG+V +G+ + +RA+ +N + +G
Sbjct: 41 SNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALDMLNFTPLNG 100
Query: 59 K---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GK 98
K S A IF+ LD + +K L + FS FG ILS KI K
Sbjct: 101 KPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATDASGQSK 160
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
G GFVQF N + A+ A KL G + + V
Sbjct: 161 GYGFVQFDNEESAKNATDKLNGMLLNDKQV 190
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 38/160 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--------GKSNNAT-------- 64
+ V + G +K +GFV F + ++ +R++ +NG GK+ T
Sbjct: 239 SAVVMQDGDGKSKCFGFVNFENADDAARSVEALNGKKFDDKEWYVGKAQKKTEREVELKG 298
Query: 65 -----------------IFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGF 102
++V LD +++D LRELFS FG I S K+ + +G GF
Sbjct: 299 RFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGTITSCKVMRDPNGISRGSGF 358
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
V F+ ++A AL + G + + + ++ +++ R
Sbjct: 359 VAFSTAEEASRALADMNGKMVASKPLYVALAQRKEDRRAR 398
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L +TFS K+ D+ +G +KGYGFV+F +E A ++NG
Sbjct: 131 IDNKALYDTFSTFGAILSCKIATDA-SGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQ 189
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS-VKIPVGKG- 99
+ K+ ++V L + +D+DL+ +F +G I S V + G G
Sbjct: 190 VYVGPFVRKQERESATNKTKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGK 249
Query: 100 --C-GFVQFANRKDAEVALQKLQG 120
C GFV F N DA +++ L G
Sbjct: 250 SKCFGFVNFENADDAARSVEALNG 273
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVAL 115
+ +++VG L+SNV+D L +LF G ++SV++ G G+V + N +DA AL
Sbjct: 31 STSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARAL 90
Query: 116 QKLQGTAIGKQTVRLSW 132
L T + + +R+ +
Sbjct: 91 DMLNFTPLNGKPIRIMY 107
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 35/159 (22%)
Query: 7 SDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
SDI N L +TFS +K+ D TG +KG+GFV F D+ A+ +NG
Sbjct: 137 SDIDNKALYDTFSVFGNILSSKIATDE-TGKSKGFGFVHFEDDTAAKEAIDALNGMLLNG 195
Query: 56 ------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG 97
+ K+N I+V ++ +D++ ELFS +G++LS +
Sbjct: 196 QEIFVGPHLSRKERDSQLEESKANFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKT 255
Query: 98 -----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
KG GFV F N +DA A+++L G+ Q + +S
Sbjct: 256 EDGKLKGFGFVDFENHEDAAKAVEELNGSQFKDQELFVS 294
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD-----------------GK 59
+ S +V D+ T + GY +V F D +A+ ++N + K
Sbjct: 65 SVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAIEKLNYTPIKGRLCRIMWSQRDPALRK 124
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVA 114
+A IF+ L S++ +K L + FS FG ILS KI KG GFV F + A+ A
Sbjct: 125 KGSANIFIKNLHSDIDNKALYDTFSVFGNILSSKIATDETGKSKGFGFVHFEDDTAAKEA 184
Query: 115 LQKLQGTAIGKQTV 128
+ L G + Q +
Sbjct: 185 IDALNGMLLNGQEI 198
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 36 GFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI- 94
G ++ D E+ A + + ++++A+++VG LD +VS+ L ++FS G + S+++
Sbjct: 13 GNLKIDDSQEQQTATSTPSSATTENSSASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVC 72
Query: 95 -----PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
G +V F + + + A++KL T I + R+ W
Sbjct: 73 RDAITKTSLGYAYVNFNDHEAGKKAIEKLNYTPIKGRLCRIMWSQ 117
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 39/138 (28%)
Query: 27 SNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------------- 57
+ G KG+GFV F + + ++A+ E+NGS
Sbjct: 255 TEDGKLKGFGFVDFENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASR 314
Query: 58 ----GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANR 108
K +F+ LD ++ D+ L+E F+ +G I SV++ +G GFV F+
Sbjct: 315 LEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTP 374
Query: 109 KDAEVAL-QKLQGTAIGK 125
++A A+ +K Q GK
Sbjct: 375 EEATKAITEKNQQIVAGK 392
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E F+ +V D+ T + GY +V + + R++ +N
Sbjct: 94 DVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTLNYTVIKGQ 153
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S KS N IFV LD N+ +K L + FS FG ILS K+ V KG
Sbjct: 154 PCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDENGHSKG 213
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV + N + A A+ K+ G IG +TV
Sbjct: 214 YGFVHYENEESARSAIDKVNGMLIGGKTV 242
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 39/150 (26%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGK 59
+I N L +TFS KV +D N GH+KGYGFV + +E A+ ++NG GK
Sbjct: 182 NIDNKALYDTFSLFGNILSCKVAVDEN-GHSKGYGFVHYENEESARSAIDKVNGMLIGGK 240
Query: 60 SNNATIFVGAL-------------DSNVSDKD----------LRELFSHFGEILSV---K 93
T++VG +NV K+ LRE F+ +G I S+ K
Sbjct: 241 ----TVYVGPFIRRAERDNLAETKYTNVYIKNMPSAWEDEARLRETFAKYGSITSLVVRK 296
Query: 94 IPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
P G+ F FA+ A+ A++ L G +
Sbjct: 297 DPKGRLFAFCNFADHDSAKAAVEALNGKRV 326
Score = 38.9 bits (89), Expect = 0.72, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 MNGSDGKSN--NATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK---GCGFVQ 104
+N + +N + +++VG L +V++ L E+F+ G + S+++ V + G +V
Sbjct: 72 LNAAASAANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVN 131
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+ +DAE +L L T I Q R+ W H
Sbjct: 132 YQGIQDAERSLDTLNYTVIKGQPCRIMWCH 161
Score = 35.8 bits (81), Expect = 6.8, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 48 RAMIEMNGSD--GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGC 100
RA E D + +++ +D ++ D+ LR+LF FG I S K+ V +
Sbjct: 372 RAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCF 431
Query: 101 GFVQFANRKDAEVALQKLQ 119
GFV F + ++A A+ ++
Sbjct: 432 GFVCFMSPEEATKAVTEMH 450
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
++T+S L + FS+ +V D T + GYG+V F + + +RA+ E+N
Sbjct: 46 NVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQELNYIPLYGK 105
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S +S IF+ LD ++ K L + FS FG I+S K+ V KG
Sbjct: 106 PIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKG 165
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQ+AN + A+ A++KL G + + V
Sbjct: 166 YGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV +DS +G +KGYGFV++ +E +A+ ++NG
Sbjct: 135 IDHKALHDTFSVFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ 193
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PV 96
+ K+ ++V L + +D DL+ F +G+I S +
Sbjct: 194 VYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGK 253
Query: 97 GKGCGFVQFANRKDAEVALQKLQG 120
KG GFV F N DA A++ L G
Sbjct: 254 SKGFGFVNFENADDAARAVESLNG 277
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 38/154 (24%)
Query: 8 DITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------ 55
D+ N+ + + V + G +KG+GFV F + ++ +RA+ +NG
Sbjct: 230 DLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 56 ---------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI 94
+ K ++ ++V LD ++SD+ L+E+FS FG + S K+
Sbjct: 290 AQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKV 349
Query: 95 ---PVG--KGCGFVQFANRKDAEVALQKLQGTAI 123
P G KG GFV F+ ++A A+ +L G I
Sbjct: 350 MRDPNGTSKGSGFVAFSTPEEATEAMSQLSGKMI 383
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG LD NV+D L + FS G ++SV++ G G+V F N +DA A+Q+
Sbjct: 37 SLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQE 96
Query: 118 LQGTAIGKQTVRLSWGH 134
L + + +R+ + H
Sbjct: 97 LNYIPLYGKPIRVMYSH 113
>gi|50305507|ref|XP_452713.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641846|emb|CAH01564.1| KLLA0C11495p [Kluyveromyces lactis]
Length = 445
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 39/159 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F D++ +A+ EM+G DG+ N
Sbjct: 225 ARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDR 284
Query: 64 -------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
T+F+G L +L E+F +GEI+SV+IP KG G+VQ
Sbjct: 285 AKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQ 344
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSWG---HNPGNKQ 140
+ + +DA A + LQG I + VRL + N GN Q
Sbjct: 345 YGSIEDATKAFEGLQGEYINNRPVRLDYSIPKQNFGNNQ 383
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----- 96
+++E + E+ G ATIFVG L ++ D+ L+ F G ++S ++
Sbjct: 180 EKSESKKPKTELAG-----EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTD 234
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAI 123
+G G+V F ++ AE A++++ G I
Sbjct: 235 RSRGYGYVDFEDKSYAEKAIKEMHGKEI 262
>gi|358412972|ref|XP_887465.4| PREDICTED: ELAV-like protein 3 isoform 8 [Bos taurus]
Length = 511
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 220 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 279
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 280 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 339
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 340 QKPLGAAEPITVKFANNPSQK 360
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 430 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 489
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 490 NGYRLGERVLQVSF 503
>gi|26390405|dbj|BAC25892.1| unnamed protein product [Mus musculus]
Length = 358
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 104 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 163
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S NN T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 164 TYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 223
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 224 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 256
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 33/156 (21%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK- 59
+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 1 VTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKE 58
Query: 60 ----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------G 97
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 59 VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKS 118
Query: 98 KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 119 KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 154
>gi|225682885|gb|EEH21169.1| nucleolysin TIA-1 [Paracoccidioides brasiliensis Pb03]
Length = 471
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 37/163 (22%)
Query: 9 ITNSILQETF------SRAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N+ KG YGFV + D RAM +NG
Sbjct: 111 VTEDILRQIFETTGHVQSVKIIPDKNS---KGLNYGFVEYDDPGAAERAMATLNGRRVHQ 167
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKI 94
+ SN+ IFVG L + V+D+ L + FS FG + +K
Sbjct: 168 SEIRVNWAYQSNSNNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 227
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 228 GRSRGYGFVAFRERSDAEKALSSMDGEWLGSRAIRCNWANQKG 270
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRKDAEVAL 115
N ++VG LD V++ LR++F G + SVKI G GFV++ + AE A+
Sbjct: 98 NKRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAM 157
Query: 116 QKLQGTAIGKQTVRLSWGH--NPGNKQWRGDHINHWNG 151
L G + + +R++W + N NK+ +H + + G
Sbjct: 158 ATLNGRRVHQSEIRVNWAYQSNSNNKEDTSNHFHIFVG 195
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ + +G FV+ ++A +A+ +L G +
Sbjct: 317 TCYVGNLTPYTTQNDLVPLFQNFGYVVETRFQADRGFAFVKMDTHENAAMAICQLSGYNV 376
Query: 124 GKQTVRLSWGHN-PGNKQWRG 143
+ ++ SWG + P Q+ G
Sbjct: 377 NGRPLKCSWGKDRPPTGQFEG 397
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 24/146 (16%)
Query: 5 QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN---------- 54
Q+ D+ N + Q R V D +TG + GYG+V + ++ + +RA+ +N
Sbjct: 55 QLYDLFNQVGQVVSVR--VCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIR 112
Query: 55 -------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGF 102
+D KS IF+ LD ++ K L E FS FG I+S KI KG GF
Sbjct: 113 VSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGF 172
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTV 128
VQ+ + + A+ A+ KL G + + V
Sbjct: 173 VQYDSEEAAQTAIDKLNGMLMNDKQV 198
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 37/141 (26%)
Query: 14 LQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------ 55
L ETFS K+ D+ +G +KGYGFV++ E A+ ++NG
Sbjct: 144 LHETFSSFGTIISCKIATDA-SGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGV 202
Query: 56 -----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKG 99
S K NN I+V L + S+ DLR+ F +G I SV + K
Sbjct: 203 FLRKQDRDSEMSKTKFNN--IYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKC 260
Query: 100 CGFVQFANRKDAEVALQKLQG 120
GFV F N +DA A+ L G
Sbjct: 261 FGFVNFENPEDAAKAVDALNG 281
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 48/74 (64%), Gaps = 6/74 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQK 117
+++VG LD +V+D L +LF+ G+++SV++ G+ G G+V ++N++DA A+
Sbjct: 41 SLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDV 100
Query: 118 LQGTAIGKQTVRLS 131
L T + +T+R+S
Sbjct: 101 LNFTPLNNKTIRVS 114
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 38/139 (27%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--------GKSNNAT---------- 64
V + G +K +GFV F + + ++A+ +NG GK+ +
Sbjct: 249 VVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRF 308
Query: 65 ---------------IFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGFVQ 104
++V LD + D+ L+ELFS +G I S K+ P G +G GFV
Sbjct: 309 EQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVA 368
Query: 105 FANRKDAEVALQKLQGTAI 123
F+ ++A AL ++ G I
Sbjct: 369 FSTPEEASRALGEMNGKMI 387
>gi|148666754|gb|EDK99170.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_d
[Mus musculus]
Length = 385
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 131 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 190
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S NN T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 191 TYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 250
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 251 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 283
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 31/157 (19%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 25 DVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 84
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 85 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 144
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 145 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 181
>gi|440910150|gb|ELR59976.1| ELAV-like protein 3, partial [Bos grunniens mutus]
Length = 373
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 128 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 187
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 188 QKPLGAAEPITVKFANNPSQK 208
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 292 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 352 NGYRLGERVLQVSF 365
>gi|148666756|gb|EDK99172.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_f
[Mus musculus]
Length = 375
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S NN T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 181 TYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 241 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 273
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 75 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 134
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
>gi|6755783|ref|NP_035715.1| nucleolysin TIA-1 isoform 1 [Mus musculus]
gi|1729966|sp|P52912.1|TIA1_MOUSE RecName: Full=Nucleolysin TIA-1; AltName: Full=RNA-binding protein
TIA-1; AltName: Full=T-cell-restricted intracellular
antigen-1; Short=TIA-1
gi|437057|gb|AAA03711.1| TIA [Mus musculus]
gi|1616673|gb|AAC52871.1| RNA binding protein TIA-1 [Mus musculus]
gi|26353510|dbj|BAC40385.1| unnamed protein product [Mus musculus]
gi|74188216|dbj|BAE25782.1| unnamed protein product [Mus musculus]
gi|148666751|gb|EDK99167.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_a
[Mus musculus]
Length = 386
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S NN T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 252 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>gi|255760009|ref|NP_001157550.1| nucleolysin TIA-1 isoform 2 [Mus musculus]
gi|28386187|gb|AAH46812.1| Tia1 protein [Mus musculus]
Length = 377
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S NN T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 183 TYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 242
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 243 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 275
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 31/157 (19%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 76
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 77 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 136
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 137 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 173
>gi|308321266|gb|ADO27785.1| nucleolysin tiar [Ictalurus furcatus]
Length = 374
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 122 ISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKN 181
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ N T++ G + S +SD +R+ FS FG+I+ +++ KG
Sbjct: 182 TQDASPKQLRYEDVVNQSSPQNCTVYCGGIQSGLSDHLMRQTFSPFGQIMEIRVFPEKGY 241
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
F++F++ + A A+ + GT I V+ WG
Sbjct: 242 SFIRFSSHESAAHAIVSVNGTTIEGHIVKCYWG 274
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T +++ + F++ T HT Y FV F + + + A+ MNG GK
Sbjct: 18 DVTENLILQLFTQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 77
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ D+R F+ FG+I ++ K
Sbjct: 78 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSK 137
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 138 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 172
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAE 112
+ +S+ T++VG L +V++ + +LF+ G S K+ FV+F +DA
Sbjct: 2 EDESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 61
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
AL + G I + V+++W P ++ + D NH++
Sbjct: 62 AALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 97
>gi|355755476|gb|EHH59223.1| Hu-antigen C, partial [Macaca fascicularis]
Length = 237
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 128 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 187
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 188 QKPLGAAEPITVKFANNPSQK 208
>gi|149020435|gb|EDL78240.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Rattus norvegicus]
Length = 251
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 189 QKPLGAAEPITVKFANNPSQK 209
>gi|410950486|ref|XP_003981936.1| PREDICTED: ELAV-like protein 3 isoform 1 [Felis catus]
gi|431918945|gb|ELK17812.1| ELAV-like protein 3 [Pteropus alecto]
Length = 352
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 61 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 120
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 121 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 180
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 181 QKPLGAAEPITVKFANNPSQK 201
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 271 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 330
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 331 NGYRLGERVLQVSF 344
>gi|426229023|ref|XP_004008593.1| PREDICTED: ELAV-like protein 3 isoform 1 [Ovis aries]
Length = 359
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 128 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 187
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 188 QKPLGAAEPITVKFANNPSQK 208
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 338 NGYRLGERVLQVSF 351
>gi|167391953|ref|XP_001739964.1| nucleolysin TIAR [Entamoeba dispar SAW760]
gi|165896141|gb|EDR23641.1| nucleolysin TIAR, putative [Entamoeba dispar SAW760]
Length = 306
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 38/165 (23%)
Query: 7 SDITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DG 58
++ + +L +TF + A+V + TG +KGYGFV F + + AM MNG +G
Sbjct: 138 PEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEG 197
Query: 59 KS------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++ N T+++G + NV DL++L + +G
Sbjct: 198 RNIKVNWVTSNIASKTEQPKRSYDEINNETSIQNCTVYIGNIPKNVESDDLKQLLAEYGS 257
Query: 89 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
I V++ KG F++F+ + A A+ G I T+R SWG
Sbjct: 258 IEEVRLNKDKGYAFIKFSKHESATSAILMCNGKIINGSTLRCSWG 302
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 23/134 (17%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------SDGKSNNAT-- 64
K+ D + H GYGFV F D A M+G + + N +
Sbjct: 72 CKIMRDKSGTHA-GYGFVEFVDSTTARFAKDNMDGRVVYGRELKVNWSYTAQQENQGSYK 130
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKL 118
IFVG L V+D L + F FG + ++ KG GFV F ++DAE A+Q +
Sbjct: 131 IFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMM 190
Query: 119 QGTAIGKQTVRLSW 132
G + + ++++W
Sbjct: 191 NGEKLEGRNIKVNW 204
>gi|148693298|gb|EDL25245.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Mus musculus]
Length = 250
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 128 VSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 187
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 188 QKPLGAAEPITVKFANNPSQK 208
>gi|109123517|ref|XP_001107360.1| PREDICTED: ELAV-like protein 3-like [Macaca mulatta]
gi|296232958|ref|XP_002761808.1| PREDICTED: ELAV-like protein 3 [Callithrix jacchus]
Length = 251
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 189 QKPLGAAEPITVKFANNPSQK 209
>gi|189208127|ref|XP_001940397.1| nucleolysin TIA-1 isoform p40 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976490|gb|EDU43116.1| nucleolysin TIA-1 isoform p40 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 470
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 24 TIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG-----SDGKSNNATIFVGALDSNVSD 76
T S + ++KG YGFV + D R M +NG ++ SN+ IFVG L + V+D
Sbjct: 119 TASSPSFNSKGFNYGFVEYDDPGAAERGMATLNGRRIHNNEDTSNHFHIFVGDLSNEVND 178
Query: 77 KDLRELFSHFGEI------LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
+ L + FS FG + +K +G GFV F +R DA+ AL + G +G + +R
Sbjct: 179 EVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADADRALSSMDGEWLGSRAIRC 238
Query: 131 SWGHNPG 137
+W + G
Sbjct: 239 NWANQKG 245
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L S DL LF +FG + + +G F++ ++A +A+ +L G +
Sbjct: 292 TCYVGNLTPYTSQSDLVPLFQNFGYVTETRFQSDRGFAFIKMDTHENAAMAICQLNGYNV 351
Query: 124 GKQTVRLSWGHN-PGNKQWRG 143
+ ++ SWG + P Q+ G
Sbjct: 352 NGRPLKCSWGKDRPPTGQFEG 372
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 6 VSDITNSILQETF----------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
V D++N + E S A+V D TG ++GYGFV F D + RA+ M+G
Sbjct: 169 VGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADADRALSSMDG 228
>gi|395850847|ref|XP_003797985.1| PREDICTED: ELAV-like protein 3 isoform 1 [Otolemur garnettii]
gi|397520901|ref|XP_003830546.1| PREDICTED: ELAV-like protein 3 isoform 1 [Pan paniscus]
gi|402904297|ref|XP_003914983.1| PREDICTED: ELAV-like protein 3 isoform 1 [Papio anubis]
gi|403302356|ref|XP_003941826.1| PREDICTED: ELAV-like protein 3 isoform 2 [Saimiri boliviensis
boliviensis]
gi|410950488|ref|XP_003981937.1| PREDICTED: ELAV-like protein 3 isoform 2 [Felis catus]
gi|14280337|gb|AAK57545.1| Hu antigen C long [Homo sapiens]
Length = 318
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 20 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 79
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 80 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 139
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 140 QKPLGAAEPITVKFANNPSQK 160
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 237 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 296
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 297 NGYRLGERVLQVSF 310
>gi|426229025|ref|XP_004008594.1| PREDICTED: ELAV-like protein 3 isoform 2 [Ovis aries]
Length = 318
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 20 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 79
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 80 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 139
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 140 QKPLGAAEPITVKFANNPSQK 160
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 237 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 296
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 297 NGYRLGERVLQVSF 310
>gi|426387255|ref|XP_004060089.1| PREDICTED: ELAV-like protein 3 isoform 3 [Gorilla gorilla gorilla]
Length = 346
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 61 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 120
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 121 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 180
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 181 QKPLGAAEPITVKFANNPSQK 201
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 265 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 325 NGYRLGERVLQVSF 338
>gi|397520903|ref|XP_003830547.1| PREDICTED: ELAV-like protein 3 isoform 2 [Pan paniscus]
Length = 311
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 20 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 79
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 80 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 139
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 140 QKPLGAAEPITVKFANNPSQK 160
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 230 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 289
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 290 NGYRLGERVLQVSF 303
>gi|281337375|gb|EFB12959.1| hypothetical protein PANDA_010283 [Ailuropoda melanoleuca]
Length = 369
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 66 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 125
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 126 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 185
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 186 QKPLGAAEPITVKFANNPSQK 206
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 288 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 348 NGYRLGERVLQVSF 361
>gi|426387251|ref|XP_004060087.1| PREDICTED: ELAV-like protein 3 isoform 1 [Gorilla gorilla gorilla]
gi|355703162|gb|EHH29653.1| Hu-antigen C [Macaca mulatta]
Length = 339
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 61 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 120
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 121 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 180
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 181 QKPLGAAEPITVKFANNPSQK 201
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 258 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 317
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 318 NGYRLGERVLQVSF 331
>gi|296485880|tpg|DAA27995.1| TPA: ELAV-like protein 3-like [Bos taurus]
Length = 407
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 116 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 175
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 176 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 235
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 236 QKPLGAAEPITVKFANNPSQK 256
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 326 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 385
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 386 NGYRLGERVLQVSF 399
>gi|426387253|ref|XP_004060088.1| PREDICTED: ELAV-like protein 3 isoform 2 [Gorilla gorilla gorilla]
Length = 366
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 61 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 120
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 121 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 180
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 181 QKPLGAAEPITVKFANNPSQK 201
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 345 NGYRLGERVLQVSF 358
>gi|359067089|ref|XP_002688919.2| PREDICTED: ELAV-like protein 3 [Bos taurus]
Length = 408
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 117 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 176
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 177 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 236
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 237 QKPLGAAEPITVKFANNPSQK 257
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 327 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 387 NGYRLGERVLQVSF 400
>gi|49355765|ref|NP_115657.2| ELAV-like protein 3 isoform 2 [Homo sapiens]
gi|119604627|gb|EAW84221.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Homo sapiens]
gi|261861050|dbj|BAI47047.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3
[synthetic construct]
gi|380783931|gb|AFE63841.1| ELAV-like protein 3 isoform 2 [Macaca mulatta]
Length = 360
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 189 QKPLGAAEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 339 NGYRLGERVLQVSF 352
>gi|344240064|gb|EGV96167.1| ELAV-like protein 3 [Cricetulus griseus]
Length = 352
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 61 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 120
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 121 VSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 180
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 181 QKPLGAAEPITVKFANNPSQK 201
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 271 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 330
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 331 NGYRLGERVLQVSF 344
>gi|395850849|ref|XP_003797986.1| PREDICTED: ELAV-like protein 3 isoform 2 [Otolemur garnettii]
gi|402904299|ref|XP_003914984.1| PREDICTED: ELAV-like protein 3 isoform 2 [Papio anubis]
Length = 359
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 128 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 187
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 188 QKPLGAAEPITVKFANNPSQK 208
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 338 NGYRLGERVLQVSF 351
>gi|301771944|ref|XP_002921434.1| PREDICTED: ELAV-like protein 3-like [Ailuropoda melanoleuca]
Length = 350
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 72 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 131
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 132 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 191
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 192 QKPLGAAEPITVKFANNPSQK 212
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 269 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 328
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 329 NGYRLGERVLQVSF 342
>gi|344283287|ref|XP_003413403.1| PREDICTED: ELAV-like protein 3 [Loxodonta africana]
Length = 360
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 189 QKPLGAAEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 339 NGYRLGERVLQVSF 352
>gi|311248628|ref|XP_003123218.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Sus
scrofa]
Length = 359
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 128 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 187
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 188 QKPLGAAEPITVKFANNPSQK 208
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 338 NGYRLGERVLQVSF 351
>gi|354475185|ref|XP_003499810.1| PREDICTED: ELAV-like protein 3 [Cricetulus griseus]
Length = 359
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 68 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 127
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 128 VSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 187
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 188 QKPLGAAEPITVKFANNPSQK 208
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 338 NGYRLGERVLQVSF 351
>gi|27229298|ref|NP_758827.1| ELAV-like protein 3 [Rattus norvegicus]
gi|34328053|ref|NP_034617.1| ELAV-like protein 3 [Mus musculus]
gi|3913870|sp|Q60900.1|ELAV3_MOUSE RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC
gi|1146120|gb|AAC52999.1| mHuC-L [Mus musculus]
gi|26006109|dbj|BAC41352.1| HuC [Rattus norvegicus]
gi|30354162|gb|AAH52097.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Mus musculus]
gi|148693297|gb|EDL25244.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Mus musculus]
gi|149020436|gb|EDL78241.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Rattus norvegicus]
Length = 367
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 189 QKPLGAAEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 346 NGYRLGERVLQVSF 359
>gi|403302354|ref|XP_003941825.1| PREDICTED: ELAV-like protein 3 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 352
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 61 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 120
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 121 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 180
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 181 QKPLGAAEPITVKFANNPSQK 201
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 271 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 330
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 331 NGYRLGERVLQVSF 344
>gi|327267754|ref|XP_003218664.1| PREDICTED: nucleolysin TIAR-like [Anolis carolinensis]
Length = 342
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 67 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 126
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 127 RQIRTNWATRKPPAPKTTQESTTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 186
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+IL + GKG FV+F+ + A A+ + GT I V+ WG
Sbjct: 187 SPFGQILETRAFPGKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 236
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 35 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 94
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 95 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 134
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS +++ KGY FVRF + A++ +NG+ +
Sbjct: 169 YCGGIASGLTDQLMRQTFSPFGQILETRAFPGKGYSFVRFSTHESAAHAIVSVNGTTIEG 228
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 229 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 256
>gi|341893520|gb|EGT49455.1| CBN-TIAR-2 protein [Caenorhabditis brenneri]
Length = 420
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 31/145 (21%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGKSN 61
++AK+ D G Y F+ F D N+ ++A+ MNG G S+
Sbjct: 65 TKAKIIFDFQ-GLADPYAFIEFSDHNQAAQALQSMNGRQLLDRELRVNWAVEPNQPGDSS 123
Query: 62 NAT-------IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANR 108
+FVG L S + L+E F FGE+ KI KG GFV + R
Sbjct: 124 RKMDYSRHFHVFVGDLSSEIDSTKLKEAFLPFGEVSEAKIIRDTTTNKAKGYGFVSYPRR 183
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
+DAE A++++ G +G++T+R +W
Sbjct: 184 EDAERAIEQMNGQWLGRRTIRTNWA 208
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 59/191 (30%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
S+I ++ L+E F S AK+ D+ T KGYGFV + + RA+ +MNG
Sbjct: 141 SEIDSTKLKEAFLPFGEVSEAKIIRDTTTNKAKGYGFVSYPRREDAERAIEQMNGQWLGR 200
Query: 57 ----------------------------------------------DGKSNNATIFVGAL 70
+N +++VG +
Sbjct: 201 RTIRTNWASRKPGEEGERRGGGFERDRERGERFHGGFEKTYDEIFHQTSPDNTSVYVGQI 260
Query: 71 DSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
S +++ ++R F FG I V+I +G FV+F ++ A A+ ++ T I Q VR
Sbjct: 261 GS-LTEDEIRRAFDRFGAINEVRIFKLQGYAFVKFEQKEPAARAIVQMNNTEIMGQMVRC 319
Query: 131 SWGH--NPGNK 139
SWG + GNK
Sbjct: 320 SWGKSGDAGNK 330
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP-----VGKGCGFVQFANRKD 110
+ G + T+FVG LD V+D+ + LF+ G + KI + F++F++
Sbjct: 31 ASGSEDPRTLFVGNLDPAVTDEFIATLFNQMGAVTKAKIIFDFQGLADPYAFIEFSDHNQ 90
Query: 111 AEVALQKLQGTAIGKQTVRLSWG---HNPGNKQWRGDHINHW 149
A ALQ + G + + +R++W + PG+ + D+ H+
Sbjct: 91 AAQALQSMNGRQLLDRELRVNWAVEPNQPGDSSRKMDYSRHF 132
>gi|345497985|ref|XP_001603213.2| PREDICTED: nucleolysin TIA-1 isoform p40-like [Nasonia vitripennis]
Length = 386
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 44/192 (22%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
+I L+E F S +V D T +KGYGFV F + E A+ MNG
Sbjct: 69 PEIETQTLREAFAPFGEISDCRVVRDPQTMKSKGYGFVSFVKKAEAESAIGAMNGQWLGS 128
Query: 57 -------------------------------DGKSNNATIFVGALDSNVSDKDLRELFSH 85
N T++ G L + ++++ +++ FS
Sbjct: 129 RSIRTNWATRKPPAPKSEANTKPLTFDEVYNQSSPTNCTVYCGGLTNGLTEELMQKTFSP 188
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH---NPGNKQWR 142
FG I +++ KG F++F+ ++ A A+ + T I QTV+ SWG +P N Q
Sbjct: 189 FGSIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQTVKCSWGKESGDPNNAQQT 248
Query: 143 GDHINHWNGAHY 154
G ++ +Y
Sbjct: 249 GQALSSATYPYY 260
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PV---GKGCGFVQFAN 107
N S KS + IFVG L + + LRE F+ FGEI ++ P KG GFV F
Sbjct: 51 NASVNKSEHYHIFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTMKSKGYGFVSFVK 110
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSWG 133
+ +AE A+ + G +G +++R +W
Sbjct: 111 KAEAESAIGAMNGQWLGSRSIRTNWA 136
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 34/152 (22%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNN------------ 62
T A+V +D N+G ++G+ +V F E +A+ EMNG DG+ N
Sbjct: 135 TVVAARVQMDRNSGKSRGFAYVEFSSPAEAQKAVEEMNGKQIDGREVNVDISQPRQPNPE 194
Query: 63 --------------ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGF 102
T+FVG L N ++ L F FG++ V++P KG G+
Sbjct: 195 KRAQVFGDSESQPSTTLFVGNLSWNTTEDGLWTAFGEFGDVTHVRLPTDQESGKPKGFGY 254
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
V+F +++ A A + ++G + +T+RL +
Sbjct: 255 VEFGDQEGATKAYEAMKGKDLDGRTLRLDYSQ 286
>gi|49355761|ref|NP_001411.2| ELAV-like protein 3 isoform 1 [Homo sapiens]
gi|21264436|sp|Q14576.3|ELAV3_HUMAN RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC; AltName: Full=Paraneoplastic cerebellar
degeneration-associated antigen; AltName:
Full=Paraneoplastic limbic encephalitis antigen 21
gi|119604626|gb|EAW84220.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Homo sapiens]
gi|380783929|gb|AFE63840.1| ELAV-like protein 3 isoform 1 [Macaca mulatta]
Length = 367
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 189 QKPLGAAEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 346 NGYRLGERVLQVSF 359
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 28/150 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
+ +T+S L E F++A +V D T + GYG+V + + SRA+ E+N
Sbjct: 54 ATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNG 113
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GK 98
S KS IF+ LD ++ K L E FS FG ILS K+ V K
Sbjct: 114 RAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSK 173
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
G GFVQ+ + A+ A+ KL G + + V
Sbjct: 174 GYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 38/158 (24%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------------- 55
V + G +KG+GFV F + ++ +RA+ +NG
Sbjct: 254 VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKF 313
Query: 56 ------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQ 104
+ KS + ++V LD +V+D LRE F+ FG I S K+ V +G GFV
Sbjct: 314 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVA 373
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
F+ ++A A+ ++ G I + + ++ +++ R
Sbjct: 374 FSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKAR 411
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L ETFS KV +D +G +KGYGFV++ + A+ ++NG
Sbjct: 144 IDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQ 202
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PV 96
S K ++V L ++SD++L ++F FG S I
Sbjct: 203 VYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK 262
Query: 97 GKGCGFVQFANRKDAEVALQKLQG 120
KG GFV F N DA A+ L G
Sbjct: 263 SKGFGFVNFENSDDAARAVDALNG 286
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAE 112
+ +++VG LD+ V+D L E F+ G+++SV++ G G+V +A +DA
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 113 VALQKLQGTAIGKQTVRLSW 132
AL +L A+ + +R+ +
Sbjct: 101 RALNELNFMALNGRAIRVMY 120
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 30/157 (19%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
+ ++LQ+ FS ++ D TG++ G FV+F D + A+ +NG
Sbjct: 16 VNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTINGRILYNKE 75
Query: 56 -----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGK 98
++ ++++ IFVG L +V+D L + F H GE ++ K
Sbjct: 76 VRIQWAFQKEKTENTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDARVMWDHSTGRSK 135
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
G GFV F ++ AE AL ++ G +G+ +R W H+
Sbjct: 136 GFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHH 172
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 34/160 (21%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + +L + F S A+V D +TG +KG+GFV F + +A+ EM+G+
Sbjct: 104 DVADPVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQW 163
Query: 58 ------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVK 93
N ++VG L + V ++DLR F +GEI +K
Sbjct: 164 KIRCGWAHHKTEAVTGLDIDTVDRADPANTNVYVGNLPTEVMEEDLRAAFGAYGEITGLK 223
Query: 94 IPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV + + A A+ + G + + V+ SWG
Sbjct: 224 PCHKGGYGFVTYRDHSAAVQAIVGMNGKELKGKMVKCSWG 263
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG------FVQFANRKDAEVALQK 117
++VG L V++ L+++FS G + V+I + G FV+F + + A +AL+
Sbjct: 6 ALYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKT 65
Query: 118 LQGTAIGKQTVRLSWG 133
+ G + + VR+ W
Sbjct: 66 INGRILYNKEVRIQWA 81
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNG- 55
++T+S L + FS+ +V DS T + GYG+V + D + +RA+ +NG
Sbjct: 179 NVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDVLNFTPLNGK 238
Query: 56 -----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP-----VGKG 99
S KS IF+ LD + K L + FS FG ILS K+ + KG
Sbjct: 239 PIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKG 298
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQF + + A+ A+ KL G + + V
Sbjct: 299 HGFVQFDSEEAAQKAIDKLNGMLLNDKQV 327
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV D+ +G +KG+GFV+F E +A+ ++NG
Sbjct: 268 IDHKALHDTFSAFGNILSCKVATDA-SGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQ 326
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PV 96
+ K +FV + ++++DL +F FG I SV +
Sbjct: 327 VFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGK 386
Query: 97 GKGCGFVQFANRKDAEVALQKLQG 120
K GFV F N DA ++++ L G
Sbjct: 387 SKCFGFVNFENVDDAAMSVEALNG 410
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 52 EMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQF 105
E N + +A+++VG LD NV+D L +LFS +++S+++ G G+V +
Sbjct: 158 EPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNY 217
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+ +DA AL L T + + +R+ + H
Sbjct: 218 TDLEDAARALDVLNFTPLNGKPIRIMYSH 246
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 46 RSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGC 100
+SR M + K A +++ LD ++ D L+ELF+ FG I S K+ P G +G
Sbjct: 434 KSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGS 493
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
GFV F++ ++A AL ++ + + + ++ +++ R
Sbjct: 494 GFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRAR 535
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKD 110
+++VG L+ NV+D L +LFS G ++SV++ G G+V ++N +D
Sbjct: 31 SLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQD 83
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E F+ +V D+ T + GY +V + + R++ +N
Sbjct: 93 DVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTLNYTVIKGQ 152
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S KS N IFV LD N+ +K L + FS FG ILS K+ V KG
Sbjct: 153 PCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDDNGHSKG 212
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV + N + A A+ K+ G IG +TV
Sbjct: 213 YGFVHYENEESARSAIDKVNGMLIGGKTV 241
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 39/150 (26%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGK 59
+I N L +TFS KV +D N GH+KGYGFV + +E A+ ++NG GK
Sbjct: 181 NIDNKALYDTFSLFGNILSCKVAVDDN-GHSKGYGFVHYENEESARSAIDKVNGMLIGGK 239
Query: 60 SNNATIFVG-------------ALDSNVSDKD----------LRELFSHFGEILSV---K 93
T++VG A +NV K+ LRE FS FG I S+ K
Sbjct: 240 ----TVYVGPFIRRAERDNLAEAKYTNVYIKNMPSAWEDESRLRETFSKFGSITSLVVRK 295
Query: 94 IPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
P G+ F FA+ A+ A++ L G +
Sbjct: 296 DPKGRLFAFCNFADHDSAKAAVEALNGKRV 325
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK---GCGFVQFA 106
MN + +++VG L +V++ L E+F+ G + S+++ V + G +V +
Sbjct: 73 MNAGAANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQ 132
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+DAE +L L T I Q R+ W H
Sbjct: 133 GIQDAERSLDTLNYTVIKGQPCRIMWCH 160
Score = 35.4 bits (80), Expect = 8.5, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 48 RAMIEMNGSD--GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGC 100
RA E D + +++ +D ++ D+ LR+LF FG I S K+ V +
Sbjct: 371 RAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCF 430
Query: 101 GFVQFANRKDAEVALQKLQ 119
GFV F + ++A A+ ++
Sbjct: 431 GFVCFMSPEEATKAVTEMH 449
>gi|395512536|ref|XP_003775304.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3 [Sarcophilus
harrisii]
Length = 287
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 71 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 130
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 131 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 190
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 191 QKPLGASEPITVKFANNPSQK 211
>gi|328792887|ref|XP_624017.2| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1 [Apis
mellifera]
Length = 367
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 44/192 (22%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
+I L+E F S +V D T +KGYGFV F + E A+ MNG
Sbjct: 64 PEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFVKKAEAESAIGAMNGQWLGS 123
Query: 57 -------------------------------DGKSNNATIFVGALDSNVSDKDLRELFSH 85
N T++ G L + ++++ +++ FS
Sbjct: 124 RSIRTNWATRKPPAPKSEANAKPLTFDEVYNQSSPTNCTVYCGGLTNGLTEELMQKTFSP 183
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH---NPGNKQWR 142
FG I +++ KG F++F+ ++ A A+ + T I QTV+ SWG +P N Q
Sbjct: 184 FGSIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQTVKCSWGKESGDPNNAQQT 243
Query: 143 GDHINHWNGAHY 154
G ++ +Y
Sbjct: 244 GQALSSATYPYY 255
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PV---GKGCGFVQFANRKDAE 112
KS + IFVG L + + LRE F+ FGEI ++ P KG GFV F + +AE
Sbjct: 51 KSEHYHIFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFVKKAEAE 110
Query: 113 VALQKLQGTAIGKQTVRLSWG 133
A+ + G +G +++R +W
Sbjct: 111 SAIGAMNGQWLGSRSIRTNWA 131
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 34/175 (19%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T+S L + F++ ++ D + + GYG+V F + ++ ++AM +N
Sbjct: 34 DVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNK 93
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP-----VGKG 99
S KS A IF+ LD + K L + FS FG ILS KI + KG
Sbjct: 94 PIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKG 153
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHY 154
GFVQF N + A+ A+ KL G + + V + G+ Q + D N + A +
Sbjct: 154 YGFVQFENEESAQSAIDKLNGMLLNDKPVYV------GHFQRKQDRDNALSNAKF 202
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG LD +V+D L +LF+ G+++SV+I G G+V F+N DA A+
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 118 LQGTAIGKQTVRLSWGH 134
L T + + +R+ + H
Sbjct: 85 LNFTPLNNKPIRIMYSH 101
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 46 RSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGC 100
+ R M + K A +++ LD +V+D+ L ELFS FG + S KI P G +G
Sbjct: 289 KERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGS 348
Query: 101 GFVQFANRKDAEVALQKLQGTAIG 124
GFV F+ ++A AL ++ G +
Sbjct: 349 GFVAFSTPEEATRALAEMNGKMVA 372
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 37/146 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS K+ +D+ +G +KGYGFV+F +E A+ ++NG
Sbjct: 123 IDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKP 181
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----- 94
S+ K NN ++V L +V+D DL+ F +G I S +
Sbjct: 182 VYVGHFQRKQDRDNALSNAKFNN--VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVD 239
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQG 120
K GFV F N A A++ L G
Sbjct: 240 GKSKCFGFVNFENADAAAEAVEALNG 265
>gi|291404907|ref|XP_002718787.1| PREDICTED: TIA-1 related protein-like [Oryctolagus cuniculus]
Length = 450
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 181 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 240
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 241 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 300
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 301 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 350
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 94 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 153
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 154 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 213
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 214 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 248
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 283 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 342
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 343 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 370
>gi|449506038|ref|XP_002188262.2| PREDICTED: nucleolysin TIAR [Taeniopygia guttata]
Length = 453
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 187 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 246
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 247 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 306
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 307 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 356
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 100 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 159
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 160 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 219
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 220 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 254
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 289 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 348
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 349 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 376
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 28/150 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
+ +T+S L E FS+A +V D N+ + GY +V F + + +RA+ +N
Sbjct: 46 ASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALEMLNFVPLNN 105
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GK 98
S +S +A IF+ LD + +K L + FS FG ILS K+ K
Sbjct: 106 KPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVATDDMGQSK 165
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
G GFVQ+ + A+ A++ L G I + V
Sbjct: 166 GFGFVQYEKEEFAQSAMKSLNGMLINDKPV 195
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 38/152 (25%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
+ V + G ++ +GF+ F ++ RA+ E+NG
Sbjct: 244 SAVVMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMDLKR 303
Query: 56 --------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGF 102
+ K +++ LD +SD LRELFS FG+I S K+ V KG GF
Sbjct: 304 RFEQSMKDAADKYQGQNLYLKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGF 363
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
V F+ R++A A+ ++ G + + + +++
Sbjct: 364 VAFSTREEASQAITEMNGKMLSGKPLYVAFAQ 395
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 33/150 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L +TFS KV D + G +KG+GFV++ E AM +NG
Sbjct: 136 IDNKTLHDTFSAFGAILSCKVATD-DMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKP 194
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG---- 97
S K+ +FV L + + +DL ++FS +G I S + VG
Sbjct: 195 VYVGPFLRKQERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGK 254
Query: 98 -KGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
+ GF+ F + DA A+++L G I +
Sbjct: 255 SRCFGFINFESPDDAVRAVEELNGKKINDK 284
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG L+++V+D L ELFS G+++SV++ G +V F+N DA AL+
Sbjct: 38 SLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALEM 97
Query: 118 LQGTAIGKQTVRLSWGH-NPGNKQ 140
L + + +R+ + + +P +++
Sbjct: 98 LNFVPLNNKPIRVMYSNRDPSSRR 121
>gi|121701611|ref|XP_001269070.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus clavatus NRRL 1]
gi|119397213|gb|EAW07644.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus clavatus NRRL 1]
Length = 480
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 34/165 (20%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T IL++ F KV D N ++KGY GFV F D RAM +NG
Sbjct: 103 VTEDILKQIFETTGHVQSVKVIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQ 162
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKI 94
+ S + IFVG L + V+D+ L + FS FG + +K
Sbjct: 163 SEIRVNWAYQSNTTSKEDTSGHFHIFVGDLSNEVNDEILMQAFSAFGSVSEARVMWDMKT 222
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DA+ AL + G +G + +R +W + G
Sbjct: 223 GRSRGYGFVAFRDRGDADKALNSMDGEWLGSRAIRCNWANQKGQP 267
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVK-IP-------VGKGCGFVQFANRKD 110
+ N ++VG LD V++ L+++F G + SVK IP G GFV+F +
Sbjct: 88 EPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKVIPDKNKFNSKGYNYGFVEFDDPGA 147
Query: 111 AEVALQKLQGTAIGKQTVRLSWGH 134
AE A+Q L G I + +R++W +
Sbjct: 148 AERAMQTLNGRRIHQSEIRVNWAY 171
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG +L ++ +G F++ ++A +A+ +L G +
Sbjct: 312 TCYVGNLTPYTAQNDLVPLFQNFGYVLETRLQADRGFAFIKMDTHENAAMAICQLNGYNV 371
Query: 124 GKQTVRLSWGHN 135
+ ++ SWG +
Sbjct: 372 NGRPLKCSWGKD 383
>gi|417410125|gb|JAA51540.1| Putative apoptosis-promoting rna-binding protein tia-1/tiar rrm
superfamily, partial [Desmodus rotundus]
Length = 367
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 97 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 156
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 157 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 216
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 217 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 266
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 10 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 69
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 70 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 129
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 130 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 164
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 199 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 258
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 259 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 286
>gi|365760560|gb|EHN02272.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 371
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 36/148 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F +++ +A+ EM G DG+ N
Sbjct: 170 ARVINERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDLSTSKPAGNNTNDR 229
Query: 64 -------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
T+F+G L N + ELF+ GE++SV+IP KG G+VQ
Sbjct: 230 AKKFGDTPSEPSDTLFLGNLSFNADRDTIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQ 289
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSW 132
F++ +D++ AL+ LQG I + VRL +
Sbjct: 290 FSSLEDSKKALESLQGEYIDNRPVRLDY 317
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L++ F H G ++S ++ +G G+V F N+ AE A+Q
Sbjct: 141 ATIFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAEKAIQ 200
Query: 117 KLQGTAI 123
++QG I
Sbjct: 201 EMQGKEI 207
>gi|345324102|ref|XP_001514793.2| PREDICTED: nucleolysin TIAR-like [Ornithorhynchus anatinus]
Length = 452
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 186 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 245
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 246 RQIRTNWATRKPPAPKSTQENSTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 305
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 306 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 355
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE
Sbjct: 174 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 233
Query: 114 ALQKLQGTAIGKQTVRLSWG 133
A+ + G +G + +R +W
Sbjct: 234 AIVHMGGQWLGGRQIRTNWA 253
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 288 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 347
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 348 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 375
>gi|119569772|gb|EAW49387.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_c [Homo sapiens]
Length = 336
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 67 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 126
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 127 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 186
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 187 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 236
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 35 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 94
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 95 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 134
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 169 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 228
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
+ + G +++ + +S +G+ V
Sbjct: 229 HVVKCYWGKESPDMTKNFQQVDYSQWGQWSQV 260
>gi|426253188|ref|XP_004020282.1| PREDICTED: nucleolysin TIAR isoform 3 [Ovis aries]
Length = 385
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 116 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 175
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 176 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 235
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 236 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 285
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
KS + +FVG L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE
Sbjct: 103 KSYHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 162
Query: 113 VALQKLQGTAIGKQTVRLSWG 133
A+ + G +G + +R +W
Sbjct: 163 NAIVHMGGQWLGGRQIRTNWA 183
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQ 119
T++VG L +V++ + +LFS G S K+ FV+F +DA AL +
Sbjct: 9 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN 68
Query: 120 GTAIGKQTVRLSWGHNPGNKQ 140
G I + V+++W P +++
Sbjct: 69 GRKILGKEVKVNWATTPSSQK 89
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 218 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 277
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 278 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 305
>gi|126273035|ref|XP_001367894.1| PREDICTED: nucleolysin TIAR isoform 2 [Monodelphis domestica]
Length = 371
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 105 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 164
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 165 RQIRTNWATRKPPAPKSTQENSTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 224
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 225 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 274
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 18 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 77
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 78 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 137
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 138 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 172
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKL 118
T++VG L +V++ + +LFS G S K+ C FV+F +DA AL +
Sbjct: 9 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC-FVEFYEHRDAAAALAAM 67
Query: 119 QGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
G I + V+++W P ++ + D NH++
Sbjct: 68 NGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 97
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 207 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 266
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 267 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 294
>gi|441599875|ref|XP_004087575.1| PREDICTED: nucleolysin TIAR isoform 2 [Nomascus leucogenys]
gi|441599878|ref|XP_003255076.2| PREDICTED: nucleolysin TIAR isoform 1 [Nomascus leucogenys]
gi|119569773|gb|EAW49388.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_d [Homo sapiens]
Length = 353
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 84 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 143
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 144 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 203
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 204 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 253
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 52 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 111
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 112 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 151
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 186 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 245
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
+ + G +++ + +S +G+ V
Sbjct: 246 HVVKCYWGKESPDMTKNFQQVDYSQWGQWSQV 277
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 28/153 (18%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--- 57
D+ ++L E F + +V DS T + GY ++ F + + RA+ +N S
Sbjct: 57 PDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLNYSPING 116
Query: 58 --------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK-- 98
+S ++V LD N+ +K L + FS FG ILS K+ P GK
Sbjct: 117 RPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSR 176
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
G GFV F + + AE A+ KL G IG++TV ++
Sbjct: 177 GFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 209
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK---GCGFVQFANRKDAEVALQ 116
A+++ G L +V++ L E+F+ G + S+++ V + G ++ F N DAE AL
Sbjct: 48 ASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 117 KLQGTAIGKQTVRLSWGH 134
L + I + RL W H
Sbjct: 108 TLNYSPINGRPCRLMWSH 125
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 27/113 (23%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
+I N L +TFS KV + + G ++G+GFV F + A+ ++NG
Sbjct: 146 NIDNKALYDTFSLFGNILSCKVALTPD-GKSRGFGFVHFESDESAEAAIAKLNGMQIGEK 204
Query: 56 -------------SDGKSNNAT-IFVGALDSNVSDKDLRELFSHFGEILSVKI 94
SDG N T +++ + + +++ +RE F FGEI S +
Sbjct: 205 TVYVAQFKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAM 257
>gi|354500962|ref|XP_003512565.1| PREDICTED: nucleolysin TIAR [Cricetulus griseus]
Length = 336
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 67 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 126
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 127 RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 186
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 187 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 236
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 35 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 94
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 95 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 134
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 169 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 228
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
+ + G +++ + +S +G+ V
Sbjct: 229 HVVKCYWGKESPDMTKNFQQVDYSQWGQWSQV 260
>gi|326924063|ref|XP_003208252.1| PREDICTED: LOW QUALITY PROTEIN: nucleolysin TIAR-like [Meleagris
gallopavo]
Length = 382
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 116 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 175
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 176 RQIRXXXXXXXXPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 235
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 236 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 285
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 29/151 (19%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 29 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 88
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 89 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 148
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129
G GFV F N+ DAE A+ + G +G + +R
Sbjct: 149 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 179
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 218 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 277
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 278 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 305
>gi|401842356|gb|EJT44580.1| NSR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 393
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 36/148 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F +++ +A+ EM G DG+ N
Sbjct: 170 ARVINERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDLSTSKPAGNNTNDR 229
Query: 64 -------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
T+F+G L N + ELF+ GE++SV+IP KG G+VQ
Sbjct: 230 AKKFGDTPSEPSDTLFLGNLSFNADRDTIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQ 289
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSW 132
F++ +D++ AL+ LQG I + VRL +
Sbjct: 290 FSSLEDSKKALESLQGEYIDNRPVRLDY 317
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L++ F H G ++S ++ +G G+V F N+ AE A+Q
Sbjct: 141 ATIFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAEKAIQ 200
Query: 117 KLQGTAI 123
++QG I
Sbjct: 201 EMQGKEI 207
>gi|297687491|ref|XP_002821246.1| PREDICTED: nucleolysin TIAR isoform 1 [Pongo abelii]
gi|410976205|ref|XP_003994513.1| PREDICTED: nucleolysin TIAR isoform 1 [Felis catus]
Length = 376
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 107 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 166
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 167 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 226
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 227 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 276
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 30/156 (19%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNG-----SDG 58
D+T ++ + FS+ T HT Y FV F + + + A+ MNG +
Sbjct: 19 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 78
Query: 59 KSNNAT---------------IFVGALDSNVSDKDLRELFSHFGEILSVKIPV------G 97
K N AT +FVG L ++ +D++ F+ FG+I ++
Sbjct: 79 KVNWATTPSSQKKILPVNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKS 138
Query: 98 KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 139 KGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 174
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 209 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 268
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 269 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 296
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANR 108
M DG+ T++VG L +V++ + +LFS G S K+ FV+F
Sbjct: 1 MMEDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 58
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+DA AL + G I + V+++W P +++
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQK 90
>gi|347839348|emb|CCD53920.1| similar to nuclear and cytoplasmic polyadenylated RNA-binding
protein pub1 [Botryotinia fuckeliana]
Length = 506
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 9 ITNSILQETFSRA------KVTIDSNTG--HTKG--YGFVRFGDENERSRAMIEMNG--- 55
+T IL++ F K+ D N G +KG YGFV + D RAM +NG
Sbjct: 100 VTEEILRQIFETTGHVQNVKIIPDKNVGAVQSKGFNYGFVEYDDPGAAERAMQTLNGRRV 159
Query: 56 -----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP--- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 160 HQAEIRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDM 219
Query: 96 ---VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GF F R+DAE AL + G +G + +R +W + G
Sbjct: 220 KTGRSRGYGFAAFRERQDAEKALSSMDGEWLGSRAIRCNWANQKGQP 266
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC----------GFVQFANR 108
+ N ++VG LD V+++ LR++F G + +VKI K GFV++ +
Sbjct: 85 EPNKRALYVGGLDPRVTEEILRQIFETTGHVQNVKIIPDKNVGAVQSKGFNYGFVEYDDP 144
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
AE A+Q L G + + +R++W + N + D NH+
Sbjct: 145 GAAERAMQTLNGRRVHQAEIRVNWAYQ-SNTSNKEDTSNHF 184
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + +DL LF +FG ++ + +G FV+ + ++A +A+ +L G +
Sbjct: 311 TCYVGNLTPYTTQQDLVPLFQNFGYVVETRFQSDRGFAFVKMDSHENAALAICQLSGYNV 370
Query: 124 GKQTVRLSWGHN 135
+ ++ SWG +
Sbjct: 371 NGRPLKCSWGKD 382
>gi|126273037|ref|XP_001367935.1| PREDICTED: nucleolysin TIAR isoform 3 [Monodelphis domestica]
Length = 385
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 119 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 178
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 179 RQIRTNWATRKPPAPKSTQENSTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 238
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 239 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 288
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKL 118
+FVG L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE A+ +
Sbjct: 112 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 171
Query: 119 QGTAIGKQTVRLSWG 133
G +G + +R +W
Sbjct: 172 GGQWLGGRQIRTNWA 186
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 221 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 280
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 281 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 308
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQ 119
T++VG L +V++ + +LFS G S K+ FV+F +DA AL +
Sbjct: 9 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN 68
Query: 120 GTAIGKQTVRLSWGHNPGNKQ 140
G I + V+++W P +++
Sbjct: 69 GRKILGKEVKVNWATTPSSQK 89
>gi|417410268|gb|JAA51610.1| Putative apoptosis-promoting rna-binding protein tia-1/tiar rrm
superfamily, partial [Desmodus rotundus]
Length = 382
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 112 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 171
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 172 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 231
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 232 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 281
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 80 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 139
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 140 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 179
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 214 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 273
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 274 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 301
>gi|355562824|gb|EHH19418.1| hypothetical protein EGK_20118, partial [Macaca mulatta]
gi|355766617|gb|EHH62534.1| hypothetical protein EGM_20905, partial [Macaca fascicularis]
gi|440900070|gb|ELR51281.1| Nucleolysin TIAR, partial [Bos grunniens mutus]
Length = 381
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 112 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 171
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 172 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 231
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 232 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 281
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 80 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 139
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 140 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 179
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 214 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 273
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 274 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 301
>gi|395742091|ref|XP_003777693.1| PREDICTED: nucleolysin TIAR [Pongo abelii]
Length = 386
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 117 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 176
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 177 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 236
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 237 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 286
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
S++ +FVG L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE
Sbjct: 105 SDHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 164
Query: 114 ALQKLQGTAIGKQTVRLSWG 133
A+ + G +G + +R +W
Sbjct: 165 AIVHMGGQWLGGRQIRTNWA 184
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 219 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 278
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 279 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 306
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANR 108
M DG+ T++VG L +V++ + +LFS G S K+ FV+F
Sbjct: 1 MMEDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 58
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+DA AL + G I + V+++W P +++
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQK 90
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 71/152 (46%), Gaps = 26/152 (17%)
Query: 5 QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN---------- 54
Q+ D+ N + Q R V D T + GYG+V F + + +RA+ +N
Sbjct: 50 QLYDLFNQVGQVVSVR--VCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRSIR 107
Query: 55 -------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP-----VGKGCGF 102
S KS A IF+ LD + K L + FS FG ILS KI + KG GF
Sbjct: 108 IMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGF 167
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
VQF N + A+ A+ KL G I + V + GH
Sbjct: 168 VQFDNEEAAQNAIDKLNGMLINDKQVYV--GH 197
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG LD NV+D L +LF+ G+++SV++ G G+V F+N +DA AL
Sbjct: 36 SLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDV 95
Query: 118 LQGTAIGKQTVRLSWGH 134
L T + +++R+ + H
Sbjct: 96 LNFTPLNNRSIRIMYSH 112
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 39/142 (27%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--------GKSNNAT---- 64
T + A + D++ G ++ +GFV F + ++ ++A+ +NG GK+ +
Sbjct: 239 TITSALIMRDAD-GKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQ 297
Query: 65 ---------------------IFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--K 98
+++ LD +SD+ L+E+F+ +G I S K+ P G +
Sbjct: 298 ELKGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGISR 357
Query: 99 GCGFVQFANRKDAEVALQKLQG 120
G GFV F+ ++A AL ++ G
Sbjct: 358 GSGFVAFSTPEEATRALGEMNG 379
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 37/146 (25%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS K+ D+ +G +KGYGFV+F +E A+ ++NG
Sbjct: 134 IDHKALHDTFSSFGLILSCKIATDA-SGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQ 192
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PV 96
S K NN ++V L + +D++L F +G I S I
Sbjct: 193 VYVGHFLRKQDRENALSKTKFNN--VYVKNLSESTTDEELMINFGEYGTITSALIMRDAD 250
Query: 97 GKG-C-GFVQFANRKDAEVALQKLQG 120
GK C GFV F N DA A++ L G
Sbjct: 251 GKSRCFGFVNFENPDDAAKAVEGLNG 276
>gi|300796220|ref|NP_001179985.1| nucleolysin TIAR [Bos taurus]
gi|296472594|tpg|DAA14709.1| TPA: TIA1 cytotoxic granule-associated RNA binding protein-like 1
[Bos taurus]
Length = 380
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 106 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 165
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 166 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 225
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 226 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 275
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 19 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 78
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 79 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 138
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 139 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANR 108
M DG+ T++VG L +V++ + +LFS G S K+ FV+F
Sbjct: 1 MMEDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 58
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
+DA AL + G I + V+++W P ++ + D NH++
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 98
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 208 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 267
Query: 61 NNATIFVGALDSNVSDKDLRELFSHF 86
+ + G +++ K+ +++ F
Sbjct: 268 HVVKCYWGKESPDMT-KNFQQVIRFF 292
>gi|297307145|ref|NP_001167497.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1
[Xenopus laevis]
gi|50416510|gb|AAH77169.1| Unknown (protein for MGC:78766) [Xenopus laevis]
Length = 385
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---SDGK------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S+ K +N T++ G + S +S++ +R+ FS FG+I+ V++ KG
Sbjct: 192 TFESNAKQLTYEEVVNQSSPSNCTVYCGGVTSGLSEQLMRQTFSPFGQIMEVRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 252 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T ++ + FS+ K+ +D T Y FV F + + ++ +NG
Sbjct: 17 DVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAASLAAINGRKILGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L +S D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDANSSSVVSTLRSQDHFHVFVGDLSPEISTDDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+ ++ G +G + +R +W
Sbjct: 135 ARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWA 182
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-----CGFVQFANRKDAEVALQKL 118
T++VG L +V++ + ++FS G S K+ + C FV+F + A +L +
Sbjct: 8 TLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMDTAGNDPYC-FVEFFEHRHAAASLAAI 66
Query: 119 QGTAIGKQTVRLSWGHNPGNKQ 140
G I + V+++W P +++
Sbjct: 67 NGRKILGKEVKVNWATTPSSQK 88
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 44/178 (24%)
Query: 9 ITNSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA 63
ITN L++ F + + + TG ++G+GFV F D + + A+ ++NG+ + A
Sbjct: 235 ITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLNGTTAHDDKA 294
Query: 64 ----------------------------------TIFVGALDSNVSDKDLRELFSHFGEI 89
+++ LD N++D L+ELFS FG I
Sbjct: 295 WYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNINDVKLKELFSEFGSI 354
Query: 90 LSVKI-----PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
S K+ V KG GFV F+ ++A AL+++ G IG++ + ++ ++ R
Sbjct: 355 TSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYVAIAQRKEERKAR 412
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 33/147 (22%)
Query: 7 SDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
S + N +L ETF+ KV +DSN G +KGYGFV+F +E RA+ ++G
Sbjct: 142 STLDNKLLHETFAAFGTVLSCKVAVDSN-GQSKGYGFVQFENEESAERAISFLDGMCLND 200
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS---VKIPV 96
++G ++V L ++++DL ++F +G I S +K
Sbjct: 201 KQVYVGFFVRQQERTRTNGSPKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQT 260
Query: 97 GK--GCGFVQFANRKDAEVALQKLQGT 121
GK G GFV F + A A++KL GT
Sbjct: 261 GKSRGFGFVNFQDPDSAAAAVEKLNGT 287
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 5 QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN---------- 54
Q+ D+ + I Q R V D + GYG+V F + + + AM +N
Sbjct: 60 QLYDLFSQIAQVVSVR--VCRDQTKRSSLGYGYVNFSNPQDAANAMKALNFTPLNGKPIR 117
Query: 55 -------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGF 102
S KS +F+ LDS + +K L E F+ FG +LS K+ V KG GF
Sbjct: 118 IMFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVLSCKVAVDSNGQSKGYGF 177
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTV 128
VQF N + AE A+ L G + + V
Sbjct: 178 VQFENEESAERAISFLDGMCLNDKQV 203
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVAL 115
N +++VG L+ NV+++ L +LFS +++SV++ + G G+V F+N +DA A+
Sbjct: 44 NLSLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAM 103
Query: 116 QKLQGTAIGKQTVRLSWGH 134
+ L T + + +R+ + H
Sbjct: 104 KALNFTPLNGKPIRIMFSH 122
>gi|344255843|gb|EGW11947.1| Nucleolysin TIAR [Cricetulus griseus]
Length = 353
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 84 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 143
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 144 RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 203
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 204 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 253
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 52 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 111
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 112 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 151
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 186 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 245
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 246 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 273
>gi|297687493|ref|XP_002821247.1| PREDICTED: nucleolysin TIAR isoform 2 [Pongo abelii]
gi|410976207|ref|XP_003994514.1| PREDICTED: nucleolysin TIAR isoform 2 [Felis catus]
Length = 393
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 124 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 183
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 184 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 243
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 244 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 293
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 26/125 (20%)
Query: 35 YGFVRFGDENERSRAMIEMNG-----SDGKSNNAT---------------IFVGALDSNV 74
Y FV F + + + A+ MNG + K N AT +FVG L +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKILPVNHFHVFVGDLSPEI 126
Query: 75 SDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
+ +D++ F+ FG+I ++ KG GFV F N+ DAE A+ + G +G + +
Sbjct: 127 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 186
Query: 129 RLSWG 133
R +W
Sbjct: 187 RTNWA 191
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 226 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 285
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 286 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 313
>gi|45872602|gb|AAH68194.1| Tial1 protein [Mus musculus]
Length = 269
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 43/169 (25%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 1 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 60
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
+ N T++ G + S ++D+ +R+ FS
Sbjct: 61 QIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 120
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 121 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 169
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 102 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 161
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
+ + G +++ + +S +G+ V
Sbjct: 162 HVVKCYWGKESPDMTKNFQQVDYSQWGQWSQV 193
>gi|449282273|gb|EMC89133.1| Nucleolysin TIAR, partial [Columba livia]
Length = 378
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 112 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 171
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 172 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 231
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 232 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 281
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 80 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 139
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 140 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 179
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 214 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 273
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 274 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 301
>gi|4507499|ref|NP_003243.1| nucleolysin TIAR isoform 1 [Homo sapiens]
gi|194205608|ref|XP_001492932.2| PREDICTED: nucleolysin TIAR isoform 2 [Equus caballus]
gi|311271909|ref|XP_001928970.2| PREDICTED: nucleolysin TIAR isoform 1 [Sus scrofa]
gi|332835148|ref|XP_001154534.2| PREDICTED: nucleolysin TIAR isoform 2 [Pan troglodytes]
gi|345792875|ref|XP_865423.2| PREDICTED: nucleolysin TIAR isoform 18 [Canis lupus familiaris]
gi|390473245|ref|XP_002756491.2| PREDICTED: nucleolysin TIAR isoform 1 [Callithrix jacchus]
gi|395827975|ref|XP_003787163.1| PREDICTED: nucleolysin TIAR isoform 2 [Otolemur garnettii]
gi|397510637|ref|XP_003825699.1| PREDICTED: nucleolysin TIAR isoform 1 [Pan paniscus]
gi|402881650|ref|XP_003904379.1| PREDICTED: nucleolysin TIAR isoform 1 [Papio anubis]
gi|403259379|ref|XP_003922194.1| PREDICTED: nucleolysin TIAR [Saimiri boliviensis boliviensis]
gi|426253184|ref|XP_004020280.1| PREDICTED: nucleolysin TIAR isoform 1 [Ovis aries]
gi|426366372|ref|XP_004050232.1| PREDICTED: nucleolysin TIAR isoform 1 [Gorilla gorilla gorilla]
gi|267131|sp|Q01085.1|TIAR_HUMAN RecName: Full=Nucleolysin TIAR; AltName: Full=TIA-1-related protein
gi|189310|gb|AAA36384.1| nucleolysin TIAR [Homo sapiens]
gi|158254826|dbj|BAF83384.1| unnamed protein product [Homo sapiens]
gi|261858270|dbj|BAI45657.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1
[synthetic construct]
gi|380783711|gb|AFE63731.1| nucleolysin TIAR isoform 1 [Macaca mulatta]
gi|383408329|gb|AFH27378.1| nucleolysin TIAR isoform 1 [Macaca mulatta]
gi|384942770|gb|AFI34990.1| nucleolysin TIAR isoform 1 [Macaca mulatta]
gi|410218474|gb|JAA06456.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410257382|gb|JAA16658.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410296996|gb|JAA27098.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
Length = 375
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 106 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 165
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 166 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 225
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 226 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 275
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 19 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 78
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 79 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 138
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 139 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANR 108
M DG+ T++VG L +V++ + +LFS G S K+ FV+F
Sbjct: 1 MMEDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 58
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
+DA AL + G I + V+++W P ++ + D NH++
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 98
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 208 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 267
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 268 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 295
>gi|54303906|gb|AAV33303.1| aging-associated gene 7 protein [Homo sapiens]
Length = 374
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 106 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 165
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 166 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 225
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 226 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 275
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 19 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 78
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 79 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 138
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 139 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANR 108
M DG+ T++VG L +V++ + +LFS G S K+ FV+F
Sbjct: 1 MMEDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 58
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
+DA AL + G I + V+++W P ++ + D NH++
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 98
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 208 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 267
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 268 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 295
>gi|327264130|ref|XP_003216869.1| PREDICTED: ELAV-like protein 3-like [Anolis carolinensis]
Length = 386
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 95 KLVRDKITGQSLGYGFVNYVDSNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 154
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP-------VGKGCGFVQFANRKDAEVALQKLQ 119
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 155 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTAGVSRGVGFIRFDKRIEAEEAIKGLN 214
Query: 120 GTAI--GKQTVRLSWGHNPGNK--QWRGDHINHWNGAHY 154
G + + + + +NP K Q H+ Y
Sbjct: 215 GQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRY 253
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF ++ S A + + G+ S IFV L + L +LF FG +
Sbjct: 273 AYGVKRFSPITIDSMTSLAGVNLTGAS--SAGWCIFVYNLSPEADESVLWQLFGPFGAVT 330
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+VK+ KG GFV N +A +A+ L G +G + +++S+
Sbjct: 331 NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRILQVSF 378
>gi|297687495|ref|XP_002821248.1| PREDICTED: nucleolysin TIAR isoform 3 [Pongo abelii]
Length = 386
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 107 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 166
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 167 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 226
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 227 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 276
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 30/156 (19%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNG-----SDG 58
D+T ++ + FS+ T HT Y FV F + + + A+ MNG +
Sbjct: 19 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 78
Query: 59 KSNNAT---------------IFVGALDSNVSDKDLRELFSHFGEILSVKIPV------G 97
K N AT +FVG L ++ +D++ F+ FG+I ++
Sbjct: 79 KVNWATTPSSQKKILPVNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKS 138
Query: 98 KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 139 KGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 174
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 209 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 268
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
+ + G +++ K+ +++ F + V
Sbjct: 269 HVVKCYWGKESPDMT-KNFQQVIQFFIALFKV 299
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANR 108
M DG+ T++VG L +V++ + +LFS G S K+ FV+F
Sbjct: 1 MMEDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 58
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+DA AL + G I + V+++W P +++
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQK 90
>gi|395501989|ref|XP_003755369.1| PREDICTED: nucleolysin TIAR [Sarcophilus harrisii]
Length = 392
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 126 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 185
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 186 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 245
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 246 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 295
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 94 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 153
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 154 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 193
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 228 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 287
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 288 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 315
>gi|14714709|gb|AAH10496.1| Tial1 protein [Mus musculus]
gi|148685700|gb|EDL17647.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_a [Mus musculus]
gi|149067624|gb|EDM17176.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1
(mapped), isoform CRA_d [Rattus norvegicus]
Length = 375
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 106 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 165
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 166 RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 225
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 226 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 275
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 19 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 78
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 79 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 138
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 139 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANR 108
M DG+ T++VG L +V++ + +LFS G S K+ FV+F
Sbjct: 1 MMEDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 58
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
+DA AL + G I + V+++W P ++ + D NH++
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 98
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 208 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 267
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 268 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 295
>gi|351710501|gb|EHB13420.1| Nucleolysin TIAR [Heterocephalus glaber]
Length = 392
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 123 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 183 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 243 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 292
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 114 ALQKLQGTAIGKQTVRLSWG 133
A+ + G +G + +R +W
Sbjct: 171 AIVHMGGQWLGGRQIRTNWA 190
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 225 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 284
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 285 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 312
>gi|297687497|ref|XP_002821249.1| PREDICTED: nucleolysin TIAR isoform 4 [Pongo abelii]
Length = 396
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 37/152 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 135 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 194
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG
Sbjct: 195 QENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYS 254
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F+ + A A+ + GT I V+ WG
Sbjct: 255 FVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 286
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
S++ +FVG L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE
Sbjct: 105 SDHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 164
Query: 114 ALQKLQGTAIGKQTVRLSWG 133
A+ + G +G + +R +W
Sbjct: 165 AIVHMGGQWLGGRQIRTNWA 184
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 219 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 278
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
+ + G +++ K+ +++ F + V
Sbjct: 279 HVVKCYWGKESPDMT-KNFQQVIQFFIALFKV 309
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANR 108
M DG+ T++VG L +V++ + +LFS G S K+ FV+F
Sbjct: 1 MMEDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 58
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+DA AL + G I + V+++W P +++
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQK 90
>gi|16215606|emb|CAC95018.1| TIA-1 protein [Xenopus laevis]
Length = 388
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---SDGK------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S+ K +N T++ G + S +S++ +R+ FS FG+I+ V++ KG
Sbjct: 192 TFESNAKQLTYEEVVNQSSPSNCTVYCGGVTSGLSEQLMRQTFSPFGQIMEVRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 252 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T ++ + FS+ K+ +D T Y FV F + + ++ +NG
Sbjct: 17 DVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAASLAAINGRKILGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L +S D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDANSSSVVSTLRSQDHFHVFVGDLSPEISTDDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+ ++ G +G + +R +W
Sbjct: 135 ARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWA 182
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-----CGFVQFANRKDAEVALQKL 118
T++VG L +V++ + ++FS G S K+ + C FV+F + A +L +
Sbjct: 8 TLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMDTAGNDPYC-FVEFFEHRHAAASLAAI 66
Query: 119 QGTAIGKQTVRLSWGHNPGNKQ 140
G I + V+++W P +++
Sbjct: 67 NGRKILGKEVKVNWATTPSSQK 88
>gi|6678349|ref|NP_033409.1| nucleolysin TIAR [Mus musculus]
gi|61557246|ref|NP_001013211.1| nucleolysin TIAR [Rattus norvegicus]
gi|2500589|sp|P70318.1|TIAR_MOUSE RecName: Full=Nucleolysin TIAR; AltName: Full=TIA-1-related protein
gi|1592563|gb|AAC52870.1| RNA binding protein TIAR [Mus musculus]
gi|12848609|dbj|BAB28019.1| unnamed protein product [Mus musculus]
gi|60552455|gb|AAH91409.1| Tia1 cytotoxic granule-associated RNA binding protein-like 1
[Rattus norvegicus]
gi|148685702|gb|EDL17649.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_c [Mus musculus]
gi|149067621|gb|EDM17173.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1
(mapped), isoform CRA_a [Rattus norvegicus]
Length = 392
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 123 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 183 RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 243 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 292
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 91 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 150
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 151 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 225 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 284
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 285 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 312
>gi|170589631|ref|XP_001899577.1| RNA recognition motif. [Brugia malayi]
gi|158593790|gb|EDP32385.1| RNA recognition motif [Brugia malayi]
Length = 287
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 30/146 (20%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS----------------DGKSN 61
FS AKV D T +KGYGFV F + +A+ EMNG DG
Sbjct: 132 FSEAKVIRDPQTLKSKGYGFVSFPVKENAQKAIEEMNGQMIGRRQIRTNWAVRKFDGGEE 191
Query: 62 NAT--------------IFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFAN 107
N T ++VG + +D++L + FS ++ V++ +G FV++ N
Sbjct: 192 NVTYDNIFNATHAANTSVYVGGISPITTDEELMQSFSAIATVIEVRLFKQQGYAFVRYLN 251
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSWG 133
+ A A+ + G I Q +R SW
Sbjct: 252 KDAAARAIMSMNGKVINGQKIRCSWS 277
>gi|126273033|ref|XP_001367857.1| PREDICTED: nucleolysin TIAR isoform 1 [Monodelphis domestica]
Length = 388
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 122 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 181
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 182 RQIRTNWATRKPPAPKSTQENSTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 241
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 242 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 291
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE
Sbjct: 110 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 169
Query: 114 ALQKLQGTAIGKQTVRLSWG 133
A+ + G +G + +R +W
Sbjct: 170 AIVHMGGQWLGGRQIRTNWA 189
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 224 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 283
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 284 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 311
>gi|281338083|gb|EFB13667.1| hypothetical protein PANDA_003438 [Ailuropoda melanoleuca]
Length = 340
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 37/152 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 130 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 189
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG
Sbjct: 190 QENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYS 249
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F+ + A A+ + GT I V+ WG
Sbjct: 250 FVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 281
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 80 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 139
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 140 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 179
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 214 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 273
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 274 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 301
>gi|77695912|ref|NP_001029097.1| nucleolysin TIAR isoform 2 [Homo sapiens]
gi|73998714|ref|XP_852319.1| PREDICTED: nucleolysin TIAR isoform 2 [Canis lupus familiaris]
gi|114633030|ref|XP_001154768.1| PREDICTED: nucleolysin TIAR isoform 6 [Pan troglodytes]
gi|311271911|ref|XP_003133244.1| PREDICTED: nucleolysin TIAR isoform 2 [Sus scrofa]
gi|338716472|ref|XP_003363459.1| PREDICTED: nucleolysin TIAR [Equus caballus]
gi|390473251|ref|XP_003734574.1| PREDICTED: nucleolysin TIAR isoform 2 [Callithrix jacchus]
gi|395827973|ref|XP_003787162.1| PREDICTED: nucleolysin TIAR isoform 1 [Otolemur garnettii]
gi|397510639|ref|XP_003825700.1| PREDICTED: nucleolysin TIAR isoform 2 [Pan paniscus]
gi|402881652|ref|XP_003904380.1| PREDICTED: nucleolysin TIAR isoform 2 [Papio anubis]
gi|426253186|ref|XP_004020281.1| PREDICTED: nucleolysin TIAR isoform 2 [Ovis aries]
gi|426366374|ref|XP_004050233.1| PREDICTED: nucleolysin TIAR isoform 2 [Gorilla gorilla gorilla]
gi|158255404|dbj|BAF83673.1| unnamed protein product [Homo sapiens]
gi|380783709|gb|AFE63730.1| nucleolysin TIAR isoform 2 [Macaca mulatta]
gi|383408327|gb|AFH27377.1| nucleolysin TIAR isoform 2 [Macaca mulatta]
gi|384942768|gb|AFI34989.1| nucleolysin TIAR isoform 2 [Macaca mulatta]
gi|410218476|gb|JAA06457.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410257384|gb|JAA16659.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410296998|gb|JAA27099.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
Length = 392
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 123 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 183 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 243 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 292
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 114 ALQKLQGTAIGKQTVRLSWG 133
A+ + G +G + +R +W
Sbjct: 171 AIVHMGGQWLGGRQIRTNWA 190
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 225 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 284
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 285 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 312
>gi|23271926|gb|AAH36071.1| ELAVL4 protein [Homo sapiens]
Length = 366
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I VG +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVGQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 253 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 312
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 313 KVIRDFNTNKCKGFGFVTMTNYDEAAMAITSLNGYRLGDRVLQVSFKTNKAHK 365
>gi|45383446|ref|NP_989687.1| nucleolysin TIAR isoform 1 [Gallus gallus]
gi|28883275|gb|AAO49721.1| TIAR [Gallus gallus]
Length = 388
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 122 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 181
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 182 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 241
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 242 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 291
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE
Sbjct: 110 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 169
Query: 114 ALQKLQGTAIGKQTVRLSWG 133
A+ + G +G + +R +W
Sbjct: 170 AIVHMGGQWLGGRQIRTNWA 189
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 224 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 283
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 284 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 311
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 34/175 (19%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T+S L + F++ ++ D + + GYG+V F + ++ ++AM +N
Sbjct: 34 DVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNK 93
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP-----VGKG 99
S KS A IF+ LD + K L + FS FG ILS KI + KG
Sbjct: 94 PIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKG 153
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWNGAHY 154
GFVQF N + A+ A+ KL G + + V + G+ Q + D N + A +
Sbjct: 154 YGFVQFENEESAQSAIDKLNGMLLNDKPVYV------GHFQRKQDRDNALSNAKF 202
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG LD +V+D L +LF+ G+++SV+I G G+V F+N DA A+
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 118 LQGTAIGKQTVRLSWGH 134
L T + + +R+ + H
Sbjct: 85 LNFTPLNNKPIRIMYSH 101
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 46 RSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGC 100
+ R M + K A +++ LD +V+D+ L ELFS FG + S KI P G +G
Sbjct: 289 KERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGS 348
Query: 101 GFVQFANRKDAEVALQKLQGTAIG 124
GFV F+ ++A AL ++ G +
Sbjct: 349 GFVAFSTPEEATRALAEMNGKMVA 372
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 37/146 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS K+ +D+ +G +KGYGFV+F +E A+ ++NG
Sbjct: 123 IDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKP 181
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----- 94
S+ K NN ++V L +V+D DL+ F +G I S +
Sbjct: 182 VYVGHFQRKQDRDNALSNAKFNN--VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVD 239
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQG 120
K GFV F N A A++ L G
Sbjct: 240 GKSKCFGFVNFENADAAAEAVEALNG 265
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FSRA +V D T H+ Y +V F + A+ MN
Sbjct: 21 DVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEHALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IFV LD ++++K L + S FG +LS K+ KG
Sbjct: 81 PLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F R+ AE A++K+ G + + V
Sbjct: 141 GFVHFETREAAERAIEKMNGIPLNDRKV 168
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 67/155 (43%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +T S KV D N +KGYGFV F RA+ +MNG N+
Sbjct: 110 INNKALYDTVSAFGNVLSCKVVCDENG--SKGYGFVHFETREAAERAIEKMNGI--PLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 QSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQ 260
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG +
Sbjct: 201 DMDDERLKDLFGKFGPTLSVKVMTD-QSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGK 259
Query: 58 ----GKSNN-------------------------ATIFVGALDSNVSDKDLRELFSHFGE 88
G++ ++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLRKAFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ P +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+ KDAE AL + I + +R+ W
Sbjct: 61 HPKDAEHALDTMNFDVIKGKPLRIMWSQ 88
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
++T+S L + F + +V D T + GYG+V F + + +RA+ E+N
Sbjct: 30 NVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGK 89
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S +S IF+ LD ++ K L + FS FG I+S K+ V KG
Sbjct: 90 PIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKG 149
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQ+AN + A+ A++KL G + + V
Sbjct: 150 YGFVQYANEESAQKAIEKLNGMLLNDKQV 178
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV +DS +G +KGYGFV++ +E +A+ ++NG
Sbjct: 119 IDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ 177
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PV 96
+ K+ ++V L + +D DL+ F +G+I S +
Sbjct: 178 VYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK 237
Query: 97 GKGCGFVQFANRKDAEVALQKLQG 120
KG GFV F N DA A++ L G
Sbjct: 238 SKGFGFVNFENADDAARAVESLNG 261
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 38/173 (21%)
Query: 8 DITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------ 55
D+ N+ + + V + G +KG+GFV F + ++ +RA+ +NG
Sbjct: 214 DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 273
Query: 56 ---------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI 94
+ K ++ ++V LD ++SD+ L+E+FS FG + S K+
Sbjct: 274 AQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV 333
Query: 95 ---PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
P G KG GFV FA ++A A+ +L G I + + ++ +++ R
Sbjct: 334 MRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 386
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVAL 115
N +++VG LD NV+D L + F G +++V++ G G+V F N +DA A+
Sbjct: 19 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 78
Query: 116 QKLQGTAIGKQTVRLSWGH 134
Q+L + + +R+ + H
Sbjct: 79 QELNYIPLYGKPIRVMYSH 97
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
++T+S L + F + +V D T + GYG+V F + + +RA+ E+N
Sbjct: 46 NVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGK 105
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S +S IF+ LD ++ K L + FS FG I+S K+ V KG
Sbjct: 106 PIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKG 165
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQ+AN + A+ A++KL G + + V
Sbjct: 166 YGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV +DS +G +KGYGFV++ +E +A+ ++NG
Sbjct: 135 IDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ 193
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PV 96
+ K+ ++V L + +D DL+ F +G+I S +
Sbjct: 194 VYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK 253
Query: 97 GKGCGFVQFANRKDAEVALQKLQG 120
KG GFV F N DA A++ L G
Sbjct: 254 SKGFGFVNFENADDAARAVESLNG 277
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 38/173 (21%)
Query: 8 DITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------ 55
D+ N+ + + V + G +KG+GFV F + ++ +RA+ +NG
Sbjct: 230 DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 56 ---------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI 94
+ K ++ ++V LD ++SD+ L+E+FS FG + S K+
Sbjct: 290 AQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV 349
Query: 95 ---PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
P G KG GFV FA ++A A+ +L G I + + ++ +++ R
Sbjct: 350 MRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 402
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVAL 115
N +++VG LD NV+D L + F G +++V++ G G+V F N +DA A+
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 116 QKLQGTAIGKQTVRLSWGH 134
Q+L + + +R+ + H
Sbjct: 95 QELNYIPLYGKPIRVMYSH 113
>gi|348507121|ref|XP_003441105.1| PREDICTED: nucleolysin TIAR [Oreochromis niloticus]
Length = 382
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 37/152 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S A+V D TG +KGYGFV F ++ + A+I M+G
Sbjct: 123 SDARVVKDMTTGKSKGYGFVSFYNKLDAENAIINMSGQWLGGRQIRTNWATRKPPAPKST 182
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ N T++ G + S +S+ +R+ FS FG+I+ V++ KG
Sbjct: 183 QDNGSKQLRFDDVVNQSSPQNCTVYCGGIQSGLSEHLMRQTFSPFGQIMEVRVFPEKGYS 242
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
F++F++ A A+ + GT I V+ WG
Sbjct: 243 FIRFSSHDSAAHAIVSVNGTVIEGHVVKCFWG 274
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 39/178 (21%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + F++ T HT Y FV F + + + A+ MNG GK
Sbjct: 18 DVTEILILQLFTQIGPCKSCKMITEHTSNDPYCFVEFFEHRDAAAALAAMNGRKILGKEV 77
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L+ ++ +D+R F+ FG+I ++ K
Sbjct: 78 KVNWATTPSSQKKDTSNHFHVFVGDLNPEITTEDVRVAFAPFGKISDARVVKDMTTGKSK 137
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG----------HNPGNKQWRGDHI 146
G GFV F N+ DAE A+ + G +G + +R +W + G+KQ R D +
Sbjct: 138 GYGFVSFYNKLDAENAIINMSGQWLGGRQIRTNWATRKPPAPKSTQDNGSKQLRFDDV 195
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAE 112
D +++ T++VG L +V++ + +LF+ G S K+ FV+F +DA
Sbjct: 2 DDETHPRTLYVGNLSRDVTEILILQLFTQIGPCKSCKMITEHTSNDPYCFVEFFEHRDAA 61
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
AL + G I + V+++W P ++ + D NH++
Sbjct: 62 AALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 97
>gi|242008705|ref|XP_002425142.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212508823|gb|EEB12404.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 849
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANR 108
G N I++G L+ ++++ L ELF +G + S+KI GK CGFV F NR
Sbjct: 178 GDPNTTNIYLGNLNPKITEQQLMELFGRYGPLASIKIMWPRTDEEKARGKNCGFVAFMNR 237
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
KD E A++ L G + + ++L WG
Sbjct: 238 KDGERAMRNLNGKDVMQYEMKLGWG 262
>gi|301759213|ref|XP_002915456.1| PREDICTED: nucleolysin TIAR-like [Ailuropoda melanoleuca]
Length = 477
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 208 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 267
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 268 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 327
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 328 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 377
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 121 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 180
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 181 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 240
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 241 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 275
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 310 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 369
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 370 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 397
>gi|344306484|ref|XP_003421917.1| PREDICTED: nucleolysin TIAR-like [Loxodonta africana]
Length = 504
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 235 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 294
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 295 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 354
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 355 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 404
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 148 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 207
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 208 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 267
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 268 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 302
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 337 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 396
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 397 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 424
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 36/148 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD-----------------GKSNNA 63
A+V ++ +TG ++GYG+V F +++ +A++EM G + KSN+
Sbjct: 204 ARVIMERSTGKSRGYGYVDFDNKDSAEKALVEMQGKEIDGRPINLDMSTGKPHASKSNDR 263
Query: 64 -------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
T+F+G L N +L E+F G ++S +IP KG G+VQ
Sbjct: 264 AKQFGDTPSAPSDTLFIGNLSFNAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQ 323
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSW 132
F++ +A+ AL+ L G I + RL +
Sbjct: 324 FSSVDEAKAALEALNGEYIEGRACRLDF 351
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRK 109
+D AT+FVG L N+ D+ L+ F H G ++ ++ + +G G+V F N+
Sbjct: 168 TDETDEPATLFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKD 227
Query: 110 DAEVALQKLQGTAIGKQTVRL 130
AE AL ++QG I + + L
Sbjct: 228 SAEKALVEMQGKEIDGRPINL 248
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 24/146 (16%)
Query: 5 QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGK--- 59
Q+ D+ N + Q R V D +T + GYG+V + +E +RA+ E+N + +GK
Sbjct: 55 QLYDLFNQMGQVVSVR--VCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112
Query: 60 ------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGF 102
S IF+ LD ++ +K L + FS FG ILS K+ +G GF
Sbjct: 113 IMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGF 172
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTV 128
VQF N + A+ A+ KL G + + V
Sbjct: 173 VQFDNEESAKSAIDKLNGMLLNDKQV 198
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 38/132 (28%)
Query: 30 GHTKGYGFVRFGDENERSRAMIEMNGSD--------GKSNNA------------------ 63
G +K +GFV F D ++ +R++ +NG GK+
Sbjct: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
Query: 64 -------TIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRKDA 111
++V LD ++SD L+ELFS FG I S K+ + +G GFV F+ ++A
Sbjct: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
Query: 112 EVALQKLQGTAI 123
AL ++ G +
Sbjct: 376 SKALTEMNGKMV 387
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L +TFS KV DS G ++GYGFV+F +E A+ ++NG
Sbjct: 139 IDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PV 96
+ K+ ++V L ++ DL+++F FG I S +
Sbjct: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
Query: 97 GKGCGFVQFANRKDAEVALQKLQG 120
K GFV F + DA +++ L G
Sbjct: 258 SKCFGFVNFDDPDDAARSVEALNG 281
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 51 IEMNGSDGKSN---NATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCG 101
I NG G + + +++VG LD +V+D L +LF+ G+++SV++ G G
Sbjct: 25 IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 84
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+V + +A AL +L T + + +R+ + +
Sbjct: 85 YVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117
>gi|327357360|gb|EGE86217.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces dermatitidis ATCC 18188]
Length = 492
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N+ KG YGFV + D RAM +NG
Sbjct: 103 VTEDILRQIFETTGHVQSVKIIPDKNS---KGLNYGFVEYDDPGAAERAMATLNGRRVHQ 159
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 160 SEIRVNWAYQSNNSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 219
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 220 GRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAIRCNWANQKGQP 264
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N +++G LD+ V++ LR++F G + SVKI K GFV++ + AE
Sbjct: 88 EPNKRALYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAER 147
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+ L G + + +R++W + N + D NH+
Sbjct: 148 AMATLNGRRVHQSEIRVNWAYQSNNSN-KEDTSNHF 182
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ + +G FV+ ++A +A+ +L G +
Sbjct: 309 TCYVGNLTPYTTQNDLIPLFQNFGYVVETRFQADRGFAFVKMDTHENAAMAICQLSGYNV 368
Query: 124 GKQTVRLSWGHN-PGNKQWRG 143
+ ++ SWG + P Q+ G
Sbjct: 369 NGRPLKCSWGKDRPPTGQFEG 389
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 28/154 (18%)
Query: 6 VSDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD-- 57
D+ ++L E F + +V DS T + GY ++ F + + RA+ +N S
Sbjct: 57 APDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLNYSPIN 116
Query: 58 ---------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK- 98
+S ++V LD N+ +K L + FS FG ILS K+ P GK
Sbjct: 117 GRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKS 176
Query: 99 -GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
G GFV F + + AE A+ KL G IG++TV ++
Sbjct: 177 RGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 210
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 30/142 (21%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
+I N L +TFS KV + + G ++G+GFV F + A+ ++NG
Sbjct: 147 NIDNKALYDTFSLFGNILSCKVALTPD-GKSRGFGFVHFESDESAEAAIAKLNGMQIGEK 205
Query: 56 -------------SDGKSNNAT-IFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK 98
SDG N T +++ + + +++ +RE F FGEI S + P G+
Sbjct: 206 TVYVAQFKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGR 265
Query: 99 GCGFVQFANRKDAEVALQKLQG 120
FV FA + A A++ + G
Sbjct: 266 RFAFVNFAEFEQARAAVEDMDG 287
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK---GCGFVQFANRKDAEVALQ 116
A+++ G L +V++ L E+F+ G + S+++ V + G ++ F N DAE AL
Sbjct: 49 ASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 108
Query: 117 KLQGTAIGKQTVRLSWGH 134
L + I + RL W H
Sbjct: 109 TLNYSPINGRPCRLMWSH 126
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 28/150 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNG 55
+++T+S L + F++ +V D T + GYG+V + + +RA+ +NG
Sbjct: 33 ANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARALDMLNFTPLNG 92
Query: 56 SD------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GK 98
S KS + IF+ LD + K L + FS FG ILS K+ K
Sbjct: 93 SPIRIMYSHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSK 152
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
G GFVQF N + A+ A++KL G + + V
Sbjct: 153 GYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV DS +G +KGYGFV+F +E +A+ ++NG
Sbjct: 123 IDHKALHDTFSAFGNILSCKVATDS-SGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS-VKIPVGKG- 99
+ K+ ++V L +++DL++ F +G I S V + G G
Sbjct: 182 VYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGK 241
Query: 100 --C-GFVQFANRKDAEVALQKLQG 120
C GFV F N DA A++ L G
Sbjct: 242 TKCFGFVNFENADDAATAVEALNG 265
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 39/164 (23%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--------GKSNN------ 62
T + A V D + G TK +GFV F + ++ + A+ +NG GK+
Sbjct: 228 TITSAVVMRDGD-GKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNEREN 286
Query: 63 -------------------ATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGK 98
A +++ LD ++ D L++LFS FG I S K+ + +
Sbjct: 287 ELKVRFEQSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGISR 346
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G GFV F+ ++A AL ++ G + + + ++ +++ R
Sbjct: 347 GSGFVAFSTPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRAR 390
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANR 108
G++ +++VG L++NV+D L +LF+ G+++SV++ G G+V +++
Sbjct: 16 GANAPYVTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSP 75
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGH 134
+DA AL L T + +R+ + H
Sbjct: 76 QDAARALDMLNFTPLNGSPIRIMYSH 101
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 28/152 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNG- 55
D+T ++L E F+ +V DS T + GY +V + + A+ IE+ G
Sbjct: 37 DVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAQEALENLNYIEIKGH 96
Query: 56 -----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S +S IFV LD ++ K L + FSHFG ILS K+ V K
Sbjct: 97 PTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKR 156
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
GFV + N + A A++K+ G IG + V ++
Sbjct: 157 YGFVHYENEESAREAIEKVNGMLIGGKRVEVA 188
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRK 109
+ K + +++ LD + D+ L ELF FG I S K+ + +G GFV F N +
Sbjct: 298 AQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQ 357
Query: 110 DAEVALQKLQ 119
+A A+ +
Sbjct: 358 EATKAIAAMH 367
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK---GCGFVQFANRKDAEVA 114
++A+++VG L +V++ L E+F+ G + S+++ V + G +V + + +DA+ A
Sbjct: 25 SSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAQEA 84
Query: 115 LQKLQGTAIGKQTVRLSWGH 134
L+ L I R+ W +
Sbjct: 85 LENLNYIEIKGHPTRIMWSN 104
>gi|449488366|ref|XP_004158014.1| PREDICTED: polyadenylate-binding protein RBP45B-like [Cucumis
sativus]
Length = 260
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 39/55 (70%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
D+T+ +LQETF AKV ID TG TKGYGFV+FGDE+E+ RAM EMNG
Sbjct: 167 DVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNG 221
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 27/144 (18%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--------------------DG 58
S KV + TG ++GYGF+ F R + NG+
Sbjct: 93 SSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTYNGTAMPNGAQNFRLNWASAGEKRQD 152
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDA 111
S + TIFVG L +V+D L+E F + + + K+ + KG GFV+F + +
Sbjct: 153 DSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ 212
Query: 112 EVALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 213 IRAMTEMNGVHCSSRPMRIGPAAN 236
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + + F+H GE+ SVK+ K G GF++F R AE LQ
Sbjct: 67 TLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQT 126
Query: 118 LQGTAI--GKQTVRLSWG 133
GTA+ G Q RL+W
Sbjct: 127 YNGTAMPNGAQNFRLNWA 144
>gi|66472532|ref|NP_001018445.1| tRNA selenocysteine 1-associated protein 1 [Danio rerio]
gi|82228819|sp|Q503H1.1|TSAP1_DANRE RecName: Full=tRNA selenocysteine 1-associated protein 1; AltName:
Full=tRNA selenocysteine-associated protein 1
gi|63102413|gb|AAH95331.1| Zgc:110606 [Danio rerio]
gi|182888884|gb|AAI64339.1| Zgc:110606 protein [Danio rerio]
Length = 314
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD------------------ 57
ET + ++ D TG GYGFV D+ R + ++NG
Sbjct: 27 ETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG 86
Query: 58 --GKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV-----GKGCGFVQFANRK 109
G+S+ ++FV L +V D L E F HF S KI + K CGFV F + +
Sbjct: 87 KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESER 146
Query: 110 DAEVALQKLQG-TAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
+ + AL LQG T +GK+ +RLS + NK+ W
Sbjct: 147 EQKRALVDLQGATGLGKKALRLSLASSRVNKKKESSENQIW 187
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 6 VSDITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG 58
D+ + +L E F K+ +D+N GH+K GFV F E E+ RA++++ G+ G
Sbjct: 102 TPDVDDGMLYEFFHYHFSSCCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATG 160
>gi|33356910|pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 23/138 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 35 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 94
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 95 VSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 154
Query: 121 TAI--GKQTVRLSWGHNP 136
+ + + + +NP
Sbjct: 155 QKPLGAAEPITVKFANNP 172
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ + + LF G+I S K+ K G GFV +++ D
Sbjct: 2 DSKTN---LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 58
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
A+ A+ L G + +T+++S+ P + R
Sbjct: 59 ADKAINTLNGLKLQTKTIKVSYAR-PSSASIR 89
>gi|417397890|gb|JAA45978.1| Putative apoptosis-promoting rna-binding protein tia-1/tiar rrm
superfamily [Desmodus rotundus]
Length = 253
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 37/150 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 3 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 62
Query: 56 ------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFV 103
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV
Sbjct: 63 NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFV 122
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+F+ + A A+ + GT I V+ WG
Sbjct: 123 RFSTHESAAHAIVSVNGTTIEGHVVKCYWG 152
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 85 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 144
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
+ + G +++ + +S +G+ V
Sbjct: 145 HVVKCYWGKESPDMTKNFQQVDYSQWGQWSQV 176
>gi|71297004|gb|AAH30025.1| TIAL1 protein [Homo sapiens]
Length = 252
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 37/150 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 3 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 62
Query: 56 ------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFV 103
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV
Sbjct: 63 NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFV 122
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+F+ + A A+ + GT I V+ WG
Sbjct: 123 RFSTHESAAHAIVSVNGTTIEGHVVKCYWG 152
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 85 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 144
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
+ + G +++ + +S +G+ V
Sbjct: 145 HVVKCYWGKESPDMTKNFQQVDYSQWGQWSQV 176
>gi|259488599|tpe|CBF88164.1| TPA: nuclear and cytoplasmic polyadenylated RNA-binding protein
pub1 (AFU_orthologue; AFUA_1G12000) [Aspergillus
nidulans FGSC A4]
Length = 477
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 35/165 (21%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N ++KG YGFV F D RAM +NG
Sbjct: 101 VTEDILKQIFETTGHVISVKIIPDKNF-NSKGANYGFVEFDDPGAAERAMQTLNGRRIHQ 159
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 160 SEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 219
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 220 GRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQP 264
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-------PVGKGCGFVQFANRKDA 111
+ N ++VG LD V++ L+++F G ++SVKI G GFV+F + A
Sbjct: 86 EPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAA 145
Query: 112 EVALQKLQGTAIGKQTVRLSWGH--NPGNKQWRGDHI 146
E A+Q L G I + +R++W + N NK+ +H
Sbjct: 146 ERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHF 182
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + D+ LF +FG ++ ++ +G F++ ++A A+ +L G +
Sbjct: 309 TCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYNV 368
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 369 NGRPLKCSWG 378
>gi|148685701|gb|EDL17648.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_b [Mus musculus]
gi|149067623|gb|EDM17175.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1
(mapped), isoform CRA_c [Rattus norvegicus]
Length = 252
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 37/150 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 3 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 62
Query: 56 ------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFV 103
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV
Sbjct: 63 TNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFV 122
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+F+ + A A+ + GT I V+ WG
Sbjct: 123 RFSTHESAAHAIVSVNGTTIEGHVVKCYWG 152
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 85 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 144
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
+ + G +++ + +S +G+ V
Sbjct: 145 HVVKCYWGKESPDMTKNFQQVDYSQWGQWSQV 176
>gi|432906488|ref|XP_004077556.1| PREDICTED: nucleolysin TIAR-like [Oryzias latipes]
Length = 382
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 37/152 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 123 SDARVVKDLTTGKSKGYGFVSFYNKLDAENAIVHMAGQWLGGRQIRTNWATRKPPAPKSL 182
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ N T++ G + S +S+ +R+ FS FG+I+ +++ KG
Sbjct: 183 QDSVSKQLRFEEVVTQSSPQNCTVYCGGIQSELSEHLMRQTFSPFGQIMEIRVFPEKGYS 242
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
F++F++ A A+ + GT+I V+ WG
Sbjct: 243 FIRFSSHDSAAHAIVSVNGTSIEGHAVKCYWG 274
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + F++ T HT Y FV F + + + A+ MNG GK
Sbjct: 18 DVTEILILQLFTQIGPCKSCKMITEHTSNDPYCFVEFFEHRDAAAALAAMNGRKILGKEV 77
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L+ ++S +D+R F+ FG+I ++ K
Sbjct: 78 KVNWATTPSSQKKDTSNHFHVFVGDLNPDISTEDVRAAFTPFGKISDARVVKDLTTGKSK 137
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 138 GYGFVSFYNKLDAENAIVHMAGQWLGGRQIRTNWA 172
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAE 112
D +S+ T++VG L +V++ + +LF+ G S K+ FV+F +DA
Sbjct: 2 DDESHPRTLYVGNLSRDVTEILILQLFTQIGPCKSCKMITEHTSNDPYCFVEFFEHRDAA 61
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
AL + G I + V+++W P ++ + D NH++
Sbjct: 62 AALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 97
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/82 (19%), Positives = 43/82 (52%)
Query: 7 SDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIF 66
S+++ ++++TFS ++ KGY F+RF + + A++ +NG+ + + +
Sbjct: 213 SELSEHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHDSAAHAIVSVNGTSIEGHAVKCY 272
Query: 67 VGALDSNVSDKDLRELFSHFGE 88
G ++++ + +S +G+
Sbjct: 273 WGKESTDMAKNPQQFEYSQWGQ 294
>gi|196009388|ref|XP_002114559.1| hypothetical protein TRIADDRAFT_28438 [Trichoplax adhaerens]
gi|190582621|gb|EDV22693.1| hypothetical protein TRIADDRAFT_28438 [Trichoplax adhaerens]
Length = 292
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 46/172 (26%)
Query: 8 DITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
DI ++L+ F S A+V DS TG +GYGFV + ++E AM MNG
Sbjct: 101 DIDTTLLRSAFNQFGHVSDARVVKDSATGKPRGYGFVSYQFKHEAENAMQSMNGAWLGGR 160
Query: 56 -------------------SDGKSN---------------NATIFVGALDSNVSDKDLRE 81
SD S N T++VG L + +++ LR
Sbjct: 161 NIRTNWATRKPGATTNRQNSDSSSTKSLNYDEIYLQTAVYNCTVYVGNLSAGTTEETLRR 220
Query: 82 LFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+F FG I +++ K F+++ + A A+ + GTA+ V+ SWG
Sbjct: 221 IFIPFGPIADIRVFPDKNYAFIRYMSHDHATNAIVVIHGTAVEGSQVKCSWG 272
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 24/127 (18%)
Query: 35 YGFVRFGDENERSRAMIEMNGSD-----------------GKSNNATIFVGALDSNVSDK 77
YGFV + ++N +RA+ MNG +N+ IFVG L ++
Sbjct: 46 YGFVEYAEKNSAARALDAMNGYSFGSRAIKVNWATNSSMRKDTNHYHIFVGDLSPDIDTT 105
Query: 78 DLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
LR F+ FG + ++ GK G GFV + + +AE A+Q + G +G + +R +
Sbjct: 106 LLRSAFNQFGHVSDARVVKDSATGKPRGYGFVSYQFKHEAENAMQSMNGAWLGGRNIRTN 165
Query: 132 WG-HNPG 137
W PG
Sbjct: 166 WATRKPG 172
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG----CGFVQFANRKDAEVALQKLQGT 121
++G LD +++ + ELF+ FG I K+ G GFV++A + A AL + G
Sbjct: 8 YIGNLDRQTTEQSIGELFAKFGAIKRCKLITEHGGNDPYGFVEYAEKNSAARALDAMNGY 67
Query: 122 AIGKQTVRLSWGHNPGNKQ 140
+ G + ++++W N ++
Sbjct: 68 SFGSRAIKVNWATNSSMRK 86
>gi|361127946|gb|EHK99901.1| putative Nucleolysin TIA-1 [Glarea lozoyensis 74030]
Length = 505
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 37/166 (22%)
Query: 9 ITNSILQETF------SRAKVTIDSNTG---HTKG--YGFVRFGDENERSRAMIEMNG-- 55
+T +L++ F K+ D N G KG YGFV + D RAM +NG
Sbjct: 98 VTEDVLRQIFETTGHVQHVKIIPDKNVGAEQQAKGFNYGFVEYDDPGAAERAMQTLNGRR 157
Query: 56 ------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LS 91
+ SN+ IFVG L + V+D+ L + FS FG +
Sbjct: 158 VHQAEIRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWD 217
Query: 92 VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
+K +G GFV F R+DAE AL + G +G + +R +W + G
Sbjct: 218 MKTGRSRGYGFVAFRERQDAEKALSSMDGEWLGSRAIRCNWANQKG 263
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----------GFVQFANRK 109
N ++VG LD V++ LR++F G + VKI K GFV++ +
Sbjct: 85 NKRALYVGGLDPRVTEDVLRQIFETTGHVQHVKIIPDKNVGAEQQAKGFNYGFVEYDDPG 144
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGH--NPGNKQWRGDHINHWNG 151
AE A+Q L G + + +R++W + N NK+ +H + + G
Sbjct: 145 AAERAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFVG 188
Score = 42.7 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ + +G FV+ ++A +A+ +L G +
Sbjct: 310 TCYVGNLTPYTTQNDLIPLFQNFGFVVETRFQADRGFAFVKMDTHENAAMAICQLSGYNV 369
Query: 124 GKQTVRLSWGHNPGNKQ 140
+ ++ SWG + Q
Sbjct: 370 NGRPLKCSWGKDKAPTQ 386
>gi|71896483|ref|NP_001025497.1| ELAV-like protein 3 [Xenopus (Silurana) tropicalis]
gi|123913100|sp|Q28FX0.1|ELAV3_XENTR RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|89266725|emb|CAJ83874.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Xenopus (Silurana) tropicalis]
Length = 343
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 24/142 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 65 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 124
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI-------PVGKGCGFVQFANRKDAEVALQKLQ 119
V +L ++ K++ +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 125 VSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLN 184
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 185 GQKPLGASEPITVKFANNPSQK 206
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 262 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 321
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 322 NGYRLGDRVLQVSF 335
>gi|158255914|dbj|BAF83928.1| unnamed protein product [Homo sapiens]
Length = 375
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 106 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDGENAIVHMGGQWLGG 165
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 166 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 225
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 226 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 275
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 19 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 78
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 79 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 138
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ D E A+ + G +G + +R +W
Sbjct: 139 GYGFVSFYNKLDGENAIVHMGGQWLGGRQIRTNWA 173
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANR 108
M DG+ T++VG L +V++ + +LFS G S K+ FV+F
Sbjct: 1 MMEDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 58
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
+DA AL + G I + V+++W P ++ + D NH++
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 98
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 208 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 267
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 268 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 295
>gi|335775520|gb|AEH58599.1| nucleolysin TIAR-like protein, partial [Equus caballus]
Length = 242
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 37/152 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 80 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 139
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG
Sbjct: 140 QENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYS 199
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F+ + A A+ + GT I V+ WG
Sbjct: 200 FVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 231
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 25/124 (20%)
Query: 35 YGFVRFGDENERSRAMIEMNGSD--GK-----------------SNNATIFVGALDSNVS 75
Y FV F + + + A+ MNG GK SN+ +FVG L ++
Sbjct: 6 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 65
Query: 76 DKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129
+D++ F+ FG+I ++ KG GFV F N+ DAE A+ + G +G + +R
Sbjct: 66 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 125
Query: 130 LSWG 133
+W
Sbjct: 126 TNWA 129
>gi|119223939|gb|AAI26843.1| TIAL1 protein [Bos taurus]
Length = 279
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 37/152 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 92 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 151
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG
Sbjct: 152 QENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYS 211
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F+ + A A+ + GT I V+ WG
Sbjct: 212 FVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 243
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 27/132 (20%)
Query: 29 TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-----------------SNNATIFV 67
T HT Y FV F + + + A+ MNG GK SN+ +FV
Sbjct: 10 TEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFV 69
Query: 68 GALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGT 121
G L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE A+ + G
Sbjct: 70 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 129
Query: 122 AIGKQTVRLSWG 133
+G + +R +W
Sbjct: 130 WLGGRQIRTNWA 141
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 176 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 235
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI 94
+ + G +++ K+ +++ F + V I
Sbjct: 236 HVVKCYWGKESPDMT-KNFQQVIRFFVALFKVSI 268
>gi|2281006|dbj|BAA21559.1| T-cluster binding protein [Homo sapiens]
gi|119569770|gb|EAW49385.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_a [Homo sapiens]
Length = 265
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 37/152 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 85 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 144
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG
Sbjct: 145 QENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYS 204
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F+ + A A+ + GT I V+ WG
Sbjct: 205 FVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 236
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 27/132 (20%)
Query: 29 TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-----------------SNNATIFV 67
T HT Y FV F + + + A+ MNG GK SN+ +FV
Sbjct: 3 TEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFV 62
Query: 68 GALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGT 121
G L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE A+ + G
Sbjct: 63 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 122
Query: 122 AIGKQTVRLSWG 133
+G + +R +W
Sbjct: 123 WLGGRQIRTNWA 134
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 169 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 228
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI 94
+ + G +++ K+ +++ F V I
Sbjct: 229 HVVKCYWGKESPDMT-KNFQQVIRFFIAFFKVSI 261
>gi|449302198|gb|EMC98207.1| hypothetical protein BAUCODRAFT_416441 [Baudoinia compniacensis
UAMH 10762]
Length = 479
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 35/167 (20%)
Query: 9 ITNSILQETF------SRAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N +KGY GFV + D RAM +NG
Sbjct: 93 VTEDVLKQIFETTGHVQSVKIIPDKNF-QSKGYNYGFVEYDDPQCAERAMQTLNGRRVHQ 151
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKI 94
+ SN+ IFVG L + V+D+ L + FS FG + +K
Sbjct: 152 QEIRVNWAYQSNTISKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGTVSEARVMWDMKT 211
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQW 141
+G GFV F +R DAE AL + G +G + +R +W + G +
Sbjct: 212 GRSRGYGFVSFRDRGDAEKALSSMDGEWLGSRAIRCNWANQKGQPSY 258
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-------PVGKGCGFVQFANRKDAEV 113
N ++VG LD V++ L+++F G + SVKI G GFV++ + + AE
Sbjct: 80 NKRALYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPQCAER 139
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
A+Q L G + +Q +R++W + N + D NH++
Sbjct: 140 AMQTLNGRRVHQQEIRVNWAYQ-SNTISKEDTSNHFH 175
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
Query: 15 QETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNV 74
Q ++S+A+ + T YG F + +S MI ++ T +VG L
Sbjct: 255 QPSYSQAQAMVQMGMTPTTPYGHHTFPTQGAQSFEMIVQQTPQWQT---TCYVGNLTPYT 311
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+ DL LF +FG + + +G FV+ ++A A+ +L G + + ++ SWG
Sbjct: 312 TQNDLVPLFQNFGYVTETRFHSDRGFAFVKMDTHENAANAICQLSGYNVNGRPLKCSWGK 371
Query: 135 N-PGNKQWRG 143
+ P Q+ G
Sbjct: 372 DRPPTGQFDG 381
>gi|14585790|gb|AAK67714.1| HUC [Homo sapiens]
Length = 360
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGRDLGYGFVNYPDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 189 QKPLGAAEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 339 NGYRLGERVLQVSF 352
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D N+ +A+ +NG S +A +
Sbjct: 63 CKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANL 122
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V +L ++ K++ +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 123 YVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 182
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 183 GQKPLGASEPITVKFANNPSQK 204
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 260 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 319
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 320 NGYRLGDRVLQVSF 333
>gi|134026264|gb|AAI36135.1| ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)
[Xenopus (Silurana) tropicalis]
Length = 342
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 65 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 124
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V +L ++ K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 125 VSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 184
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 185 QKPLGASEPITVKFANNPSQK 205
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 261 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 320
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 321 NGYRLGDRVLQVSF 334
>gi|363744745|ref|XP_003643117.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gallus gallus]
Length = 366
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 G--TAIGKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPPAATEPITVKFANNPSQK 216
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 345 NGYRLGDRVLQVSFKTNKTHK 365
>gi|390594976|gb|EIN04384.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 611
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 36/154 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNN---------------- 62
A+V ID NTG ++G+G V F D + +A+ MNG DG+ N
Sbjct: 372 ARVNIDRNTGKSRGFGHVEFADASSVQKAIDTMNGKEIDGRPVNVDRAPGLNKNQQRENR 431
Query: 63 ------------ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQ 104
+ +FVG L + ++ + E F GE+ SV++P KG G+V+
Sbjct: 432 AKAFGDSTSAPSSVLFVGNLSWDATEDAVWEAFGEHGEVKSVRLPTDRESGRPKGFGYVE 491
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
F + A+ A + L GT IG +++RL + N
Sbjct: 492 FVDVDAAKAAFEALSGTEIGGRSIRLDYSQPRDN 525
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRK 109
++ + + TIFVG L NV D L F+ GE++S ++ + +G G V+FA+
Sbjct: 336 AEQEEESKTIFVGRLSWNVDDDQLASEFAECGEVVSARVNIDRNTGKSRGFGHVEFADAS 395
Query: 110 DAEVALQKLQGTAIGKQTVRL 130
+ A+ + G I + V +
Sbjct: 396 SVQKAIDTMNGKEIDGRPVNV 416
>gi|148224170|ref|NP_001084080.1| ELAV-like protein 3 [Xenopus laevis]
gi|82245647|sp|Q91584.1|ELAV3_XENLA RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|608541|gb|AAA96944.1| ribonucleoprotein [Xenopus laevis]
Length = 348
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D N+ +A+ +NG S +A +
Sbjct: 63 CKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANL 122
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V +L ++ K++ +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 123 YVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 182
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 183 GQKPLGASEPITVKFANNPSQK 204
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 267 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 326
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 327 NGYRLGDRVLQVSF 340
>gi|147902038|ref|NP_001087561.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
laevis]
gi|51261513|gb|AAH80105.1| MGC84540 protein [Xenopus laevis]
Length = 389
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---SDGK------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S+ K +N T++ G + S ++++ +R+ FS FG+I+ V++ KG
Sbjct: 192 TYESNAKQLTYEEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 252 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T ++ + FS+ K+ +D T Y FV F + + ++ +NG
Sbjct: 17 DVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAASLAAINGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDANSSSVVSTLRSQDHFHVFVGDLSPEITTDDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+ ++ G +G + +R +W
Sbjct: 135 ARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWA 182
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-----CGFVQFANRKDAEVALQKL 118
T++VG L +V++ + ++FS G S K+ + C FV+F + A +L +
Sbjct: 8 TLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMDTAGNDPYC-FVEFFEHRHAAASLAAI 66
Query: 119 QGTAIGKQTVRLSWGHNPGNKQ 140
G I + V+++W P +++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQK 88
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
YC S +T ++++TFS ++ KGY FVRF + A++ +NG+
Sbjct: 217 YCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFSSHESAAHAIVSVNGT 272
>gi|358397912|gb|EHK47280.1| hypothetical protein TRIATDRAFT_165657, partial [Trichoderma
atroviride IMI 206040]
Length = 465
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N KGY GFV + D RAM +NG
Sbjct: 87 VTEDVLRQIFETTGHVQNVKIIPDKNA---KGYNYGFVEYDDPGAADRAMATLNGRRVHQ 143
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D L + FS FG + ++
Sbjct: 144 SEIRVNWAYQSNTTTKEDTSNHFHIFVGDLSNEVNDDILHQAFSAFGSVSEARVMWDMKT 203
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 204 GRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKGQP 248
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + +VKI K GFV++ + A+
Sbjct: 72 EPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADR 131
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+ L G + + +R++W + N + D NH+
Sbjct: 132 AMATLNGRRVHQSEIRVNWAYQ-SNTTTKEDTSNHF 166
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + D+ LF +FG ++ + +G F++ ++A +A+ ++ G +
Sbjct: 293 TCYVGNLTPYTTHTDVVPLFQNFGFVVESRFQADRGFAFIKMDTHENAAMAICQMNGYNV 352
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 353 NGRPLKCSWG 362
>gi|363744747|ref|XP_001233484.2| PREDICTED: ELAV-like protein 2 isoform 1 [Gallus gallus]
Length = 345
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 67 CKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 126
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 127 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLN 186
Query: 120 G--TAIGKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 187 GQKPPAATEPITVKFANNPSQK 208
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 264 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 323
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 324 NGYRLGDRVLQVSFKTNKTHK 344
>gi|45361397|ref|NP_989276.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
gi|39795756|gb|AAH64164.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
Length = 386
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ V++ KG
Sbjct: 192 TYESNTKQLTYEEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 252 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T ++ + FS+ K+ +D T Y FV F + + ++ MNG
Sbjct: 17 DVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAASLAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDANSSSVVSTLRSQDHFHVFVGDLSPEITTDDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+ ++ G +G + +R +W
Sbjct: 135 ARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWA 182
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-----CGFVQFANRKDAEVALQKL 118
T++VG L +V++ + ++FS G S K+ + C FV+F + A +L +
Sbjct: 8 TLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMDTAGNDPYC-FVEFFEHRHAAASLAAM 66
Query: 119 QGTAIGKQTVRLSWGHNPGNKQ 140
G I + V+++W P +++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQK 88
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
YC S +T ++++TFS ++ KGY FVRF + A++ +NG+
Sbjct: 217 YCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFSSHESAAHAIVSVNGT 272
>gi|89272716|emb|CAJ83609.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
Length = 389
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ V++ KG
Sbjct: 192 TYESNTKQLTYEEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 252 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T ++ + FS+ K+ +D T Y FV F + + ++ MNG
Sbjct: 17 DVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAASLAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDANSSSVVSTLRSQDHFHVFVGDLSPEITTDDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+ ++ G +G + +R +W
Sbjct: 135 ARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWA 182
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-----CGFVQFANRKDAEVALQKL 118
T++VG L +V++ + ++FS G S K+ + C FV+F + A +L +
Sbjct: 8 TLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMDTAGNDPYC-FVEFFEHRHAAASLAAM 66
Query: 119 QGTAIGKQTVRLSWGHNPGNKQ 140
G I + V+++W P +++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQK 88
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
YC S +T ++++TFS ++ KGY FVRF + A++ +NG+
Sbjct: 217 YCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFSSHESAAHAIVSVNGT 272
>gi|444318191|ref|XP_004179753.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
gi|387512794|emb|CCH60234.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
Length = 403
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 35/147 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F ++ +A+ EM G DG+ N
Sbjct: 190 ARVIYEKGTDRSRGYGYVDFKNKTFAEKAIKEMQGKEIDGRPINCDMSTSKPASNGGDRA 249
Query: 64 ------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQF 105
T+F+G L + ++ E+FS +GEI+SV+IP KG G+VQ+
Sbjct: 250 KKFGDTPSEPSETLFLGNLSFDADRDNIYEVFSKYGEIISVRIPTHPETEQPKGFGYVQY 309
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLSW 132
+ + A+ AL LQG I + VRL +
Sbjct: 310 GDVESAKKALDALQGEYINNRPVRLDF 336
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 39 RFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK 98
R D+ E S + + D ATIFVG L ++ D+ L+ F G +LS ++ K
Sbjct: 139 RKADDEESSES--KKQKPDESEEPATIFVGRLSWSIDDEWLKTEFEPIGGVLSARVIYEK 196
Query: 99 GC------GFVQFANRKDAEVALQKLQGTAI 123
G G+V F N+ AE A++++QG I
Sbjct: 197 GTDRSRGYGYVDFKNKTFAEKAIKEMQGKEI 227
>gi|119569771|gb|EAW49386.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_b [Homo sapiens]
Length = 282
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 37/152 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 102 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 161
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG
Sbjct: 162 QENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYS 221
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F+ + A A+ + GT I V+ WG
Sbjct: 222 FVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 253
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 25/124 (20%)
Query: 35 YGFVRFGDENERSRAMIEMNGSD--GK-----------------SNNATIFVGALDSNVS 75
Y FV F + + + A+ MNG GK SN+ +FVG L ++
Sbjct: 28 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 87
Query: 76 DKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129
+D++ F+ FG+I ++ KG GFV F N+ DAE A+ + G +G + +R
Sbjct: 88 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 147
Query: 130 LSWG 133
+W
Sbjct: 148 TNWA 151
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 186 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 245
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI 94
+ + G +++ K+ +++ F V I
Sbjct: 246 HVVKCYWGKESPDMT-KNFQQVIRFFIAFFKVSI 278
>gi|123975938|ref|XP_001314386.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121896695|gb|EAY01839.1| hypothetical protein TVAG_002940 [Trichomonas vaginalis G3]
Length = 307
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 22/131 (16%)
Query: 32 TKGYGFVRFGDENERSRAMIEMNGS--DGKSNNATI----------------FVGALDSN 73
T Y FV F D+ E +A+ + N + +G+S T+ FV +D +
Sbjct: 52 TGSYCFVEFADKEEAEKAVRDFNYTKLNGESIVITLTNHGIMQRIVSGEGNLFVRGIDES 111
Query: 74 VSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129
+ L ELFSHFGE++S KIPV +G +VQFAN D + A+++L + I + +
Sbjct: 112 IEAPQLHELFSHFGEVISCKIPVLNGKPRGYAYVQFANPADGDRAMKELADSTINGKAIT 171
Query: 130 LSWGHNPGNKQ 140
+ N G +Q
Sbjct: 172 IEKFINRGMRQ 182
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 29/128 (22%)
Query: 30 GHTKGYGFVRFGDENERSRAMIEMNGS--DGKS--------------NNAT--------- 64
G +GY +V+F + + RAM E+ S +GK+ N AT
Sbjct: 137 GKPRGYAYVQFANPADGDRAMKELADSTINGKAITIEKFINRGMRQPNKATEQNIATDPT 196
Query: 65 ---IFVGALDSNVSDK-DLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
IF+ L +++ DL LF +G+++S +I K GF + + + A A+ L G
Sbjct: 197 FTNIFIKNLPESINTLLDLLRLFQEYGQVVSARIVPEKRSGFAKMIDHESAVRAVLGLNG 256
Query: 121 TAIGKQTV 128
I T+
Sbjct: 257 RVIYGHTI 264
>gi|432115353|gb|ELK36770.1| Nucleolysin TIAR [Myotis davidii]
Length = 284
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 37/150 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 76 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 135
Query: 56 ------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFV 103
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV
Sbjct: 136 NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFV 195
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+F+ + A A+ + GT I V+ WG
Sbjct: 196 RFSTHESAAHAIVSVNGTTIEGHVVKCYWG 225
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 158 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 217
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
+ + G +++ + +S +G+ V
Sbjct: 218 HVVKCYWGKESPDMTKNFQQVDYSQWGQWSQV 249
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 35 YGFVRFGDENERSRAMIEMNG-----SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
Y FV F + + + A+ MNG + K N AT + + S KD R +
Sbjct: 28 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSSKDARV-------V 79
Query: 90 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+ KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 80 KDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 123
>gi|345787182|ref|XP_542056.3| PREDICTED: ELAV-like protein 3 [Canis lupus familiaris]
Length = 647
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 356 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 415
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 416 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 475
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 476 QKPLGAAEPITVKFANNPSQK 496
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 566 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 625
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 626 NGYRLGERVLQVSF 639
>gi|154269845|ref|XP_001535826.1| hypothetical protein HCAG_09244 [Ajellomyces capsulatus NAm1]
gi|150409464|gb|EDN04912.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 387
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N+ KG YGFV + D RAM +NG
Sbjct: 103 VTEDILRQIFETTGHVQSVKIIPDKNS---KGLNYGFVEYDDPGAAERAMSTLNGRRVHQ 159
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 160 SEIRVNWAYQSNNNNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 219
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 220 GRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAIRCNWANQKGQP 264
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N +++G LD+ V++ LR++F G + SVKI K GFV++ + AE
Sbjct: 88 EPNKRALYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAER 147
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+ L G + + +R++W + N + D NH+
Sbjct: 148 AMSTLNGRRVHQSEIRVNWAYQSNNNN-KEDTSNHF 182
>gi|431093|gb|AAA58677.1| huc [Homo sapiens]
Length = 359
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGRDLGYGFVNYPDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 189 QKPLGAAEPITVKFANNPSQK 209
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRK 109
S G + IFV L + L +LF FG + +VK+ KG GFV N
Sbjct: 269 SGGAAGGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 328
Query: 110 DAEVALQKLQGTAIGKQTVRLSW 132
+A +A+ L G + ++ +++S+
Sbjct: 329 EAAMAIASLNGYRLAERVLQVSF 351
>gi|392869588|gb|EJB11873.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Coccidioides immitis RS]
Length = 466
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 35/163 (21%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N +KG YGFV + D RAM +NG
Sbjct: 103 VTEDILRQIFETTGHVQSVKIIPDKNF-QSKGLNYGFVEYDDPGAAERAMQTLNGRRVHQ 161
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKI 94
+ SN+ IFVG L + V+D+ L + FS FG + +K
Sbjct: 162 SEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 221
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 222 GRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNWANQKG 264
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-------PVGKGCGFVQFANRKDA 111
+ N ++VG LD V++ LR++F G + SVKI G GFV++ + A
Sbjct: 88 EPNKRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNFQSKGLNYGFVEYDDPGAA 147
Query: 112 EVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
E A+Q L G + + +R++W + N + D NH+
Sbjct: 148 ERAMQTLNGRRVHQSEIRVNWAYQSNNAN-KEDTSNHF 184
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ + +G FV+ ++A +A+ +L G +
Sbjct: 311 TCYVGNLTPYTTQNDLVPLFQNFGYVVETRFQADRGFAFVKMDTHENAAMAICQLNGYNV 370
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 371 NGRPLKCSWG 380
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 7 SDITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+ I N L ETF+ KV +D+N G +KGYGF++F +E + A+ +NG
Sbjct: 130 TKIDNKALYETFASFGPVLSCKVAVDNN-GQSKGYGFIQFENEEDAQSAINRLNGMLVND 188
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS---VKIPV 96
++G ++V L SD+DL+++FS +G I S +K
Sbjct: 189 REVYVGPFVRRLERIEANGSPKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQN 248
Query: 97 GK--GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
GK G GFV F + A A++KL G + + G ++
Sbjct: 249 GKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYVGRAQRKGERE 294
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 22/117 (18%)
Query: 34 GYGFVRFGDENERSRAMIEMNGS--DGK---------------SNNATIFVGALDSNVSD 76
GY +V F + + ++AM +N + +GK S +A +F+ LD+ + +
Sbjct: 75 GYAYVNFSNPQDAAKAMEVLNFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDN 134
Query: 77 KDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
K L E F+ FG +LS K+ V KG GF+QF N +DA+ A+ +L G + + V
Sbjct: 135 KALYETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREV 191
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 38/144 (26%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---SDG------------------- 58
+ + + G ++G+GFV F + + A+ ++NG SD
Sbjct: 240 SAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYVGRAQRKGEREAELKA 299
Query: 59 -----------KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGF 102
K A +++ L + ++ L+ELFS FG I S K+ + KG GF
Sbjct: 300 KFEQERNSRYEKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSGF 359
Query: 103 VQFANRKDAEVALQKLQGTAIGKQ 126
V F+ ++A AL ++ G IGK+
Sbjct: 360 VAFSTPEEASRALSEMNGKMIGKK 383
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVAL 115
N +++VG L+ NV + L +LFS ++S ++ + G +V F+N +DA A+
Sbjct: 32 NRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAM 91
Query: 116 QKLQGTAIGKQTVRLSWGH-NPGNKQWRGDHIN 147
+ L T + + +R+ + H +P + R H N
Sbjct: 92 EVLNFTPLNGKPIRIMFSHRDPTTR--RSGHAN 122
Score = 35.8 bits (81), Expect = 6.4, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 14 LQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67
L+E FS KV +D G +KG GFV F E SRA+ EMNG ++V
Sbjct: 331 LKELFSEFGSITSCKVMLDQQ-GLSKGSGFVAFSTPEEASRALSEMNGK--MIGKKPLYV 387
Query: 68 GALDSNVSDKDLRELFSHFGEILSVKIP 95
+ ++ + L +HF +I + +P
Sbjct: 388 AI--AQRREERMARLQAHFSQIQAPGLP 413
>gi|410928269|ref|XP_003977523.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Takifugu rubripes]
Length = 334
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 25/149 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN---------------NATI 65
AK+ D GH+ GYGFV F + ++ RA+ +NG +S +A +
Sbjct: 60 AKLIRDKVAGHSLGYGFVNFVNPSDAVRAINTLNGLRLQSKTLKVSYARPSSEMIKDANL 119
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
++ L S +DL ++FSH+G I++ ++ V +G F++F R +AE A++ L
Sbjct: 120 YISGLPRTASQQDLEDMFSHYGRIINSRVLVDQASGVSRGVAFIRFDKRSEAEDAIKHLN 179
Query: 120 G-TAIGK-QTVRLSWGHNPGNKQWRGDHI 146
G T G + + + + NP Q RG +
Sbjct: 180 GHTPPGSAEPITVKFATNPN--QARGSQV 206
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFA 106
M D ++N + V L ++S ++LR LFS G++ S K+ K G GFV F
Sbjct: 24 MEDEDARTN---LIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGHSLGYGFVNFV 80
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWG 133
N DA A+ L G + +T+++S+
Sbjct: 81 NPSDAVRAINTLNGLRLQSKTLKVSYA 107
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
IF+ L + L +LF FG +++VK+ KG GFV +N ++A +A+ L
Sbjct: 254 IFIYNLGQEADEAILWQLFGPFGAVVNVKVIRDFNTSKCKGFGFVTMSNYEEAAMAIHSL 313
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ + G+K
Sbjct: 314 NGYRLGDKVLQVSFKTSKGHK 334
>gi|410928271|ref|XP_003977524.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 25/149 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN---------------NATI 65
AK+ D GH+ GYGFV F + ++ RA+ +NG +S +A +
Sbjct: 84 AKLIRDKVAGHSLGYGFVNFVNPSDAVRAINTLNGLRLQSKTLKVSYARPSSEMIKDANL 143
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
++ L S +DL ++FSH+G I++ ++ V +G F++F R +AE A++ L
Sbjct: 144 YISGLPRTASQQDLEDMFSHYGRIINSRVLVDQASGVSRGVAFIRFDKRSEAEDAIKHLN 203
Query: 120 G-TAIGK-QTVRLSWGHNPGNKQWRGDHI 146
G T G + + + + NP Q RG +
Sbjct: 204 GHTPPGSAEPITVKFATNPN--QARGSQV 230
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFA 106
M D ++N + V L ++S ++LR LFS G++ S K+ K G GFV F
Sbjct: 48 MEDEDARTN---LIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGHSLGYGFVNFV 104
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWG 133
N DA A+ L G + +T+++S+
Sbjct: 105 NPSDAVRAINTLNGLRLQSKTLKVSYA 131
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
IF+ L + L +LF FG +++VK+ KG GFV +N ++A +A+ L
Sbjct: 278 IFIYNLGQEADEAILWQLFGPFGAVVNVKVIRDFNTSKCKGFGFVTMSNYEEAAMAIHSL 337
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ + G+K
Sbjct: 338 NGYRLGDKVLQVSFKTSKGHK 358
>gi|297301957|ref|XP_001098541.2| PREDICTED: nucleolysin TIAR isoform 5 [Macaca mulatta]
Length = 506
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 37/152 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 255 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 314
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG
Sbjct: 315 QENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYS 374
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F+ + A A+ + GT I V+ WG
Sbjct: 375 FVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 406
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE
Sbjct: 225 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 284
Query: 114 ALQKLQGTAIGKQTVRLSWG 133
A+ + G +G + +R +W
Sbjct: 285 AIVHMGGQWLGGRQIRTNWA 304
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 5 QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN---------- 54
Q+ D+ N + Q R V D T + GYG+V F + + +RA+ +N
Sbjct: 47 QLYDLFNQVGQVVSVR--VCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIR 104
Query: 55 -------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGF 102
S KS A IF+ LD + K L + FS FG+I+S KI KG GF
Sbjct: 105 VMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGF 164
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTV 128
VQF A+ A+ KL G I + V
Sbjct: 165 VQFEAEDSAQNAIDKLNGMLINDKQV 190
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 40/146 (27%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--------GKSNNAT---- 64
T + A + D++ G +K +GFV F + + ++A+ +NG GK+ +
Sbjct: 236 TITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQ 294
Query: 65 ----------------------IFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVG 97
+++ LD +++D+ L+E+FS FG I S KI V
Sbjct: 295 ELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVS 354
Query: 98 KGCGFVQFANRKDAEVALQKLQGTAI 123
+G GFV F+ ++A AL ++ G I
Sbjct: 355 RGSGFVAFSTPEEASRALGEMNGKMI 380
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG L+ NV+D L +LF+ G+++SV++ G G+V F N +DA AL
Sbjct: 33 SLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDV 92
Query: 118 LQGTAIGKQTVRLSWGH-NPGNKQ 140
L T + +++R+ + H +P +++
Sbjct: 93 LNFTPMNNKSIRVMYSHRDPSSRK 116
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 37/149 (24%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS K+ D +G +KGYGFV+F E+ A+ ++NG
Sbjct: 131 IDHKALHDTFSSFGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQ 189
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----- 94
S K NN ++V L + ++ DL+ F +G I S +
Sbjct: 190 VFVGHFLRKQDRDNVLSKTKFNN--VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD 247
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAI 123
K GFV F N +DA A++ L G +
Sbjct: 248 GRSKCFGFVNFENAEDAAKAVEALNGKKV 276
>gi|429863469|gb|ELA37920.1| nuclear and cytoplasmic polyadenylated rna-binding protein pub1
[Colletotrichum gloeosporioides Nara gc5]
Length = 479
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N KGY GFV + D RAM +NG
Sbjct: 97 VTEDVLRQIFETTGHVQNVKIIPDKNA---KGYNYGFVEYDDPGAAERAMQTLNGRRVHQ 153
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 154 SEIRVNWAYQSNTSSKEDTSNHFHIFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMKT 213
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 214 GRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKGQP 258
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + +VKI K GFV++ + AE
Sbjct: 82 EPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAER 141
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + N + D NH+
Sbjct: 142 AMQTLNGRRVHQSEIRVNWAYQ-SNTSSKEDTSNHF 176
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + D+ LF +FG ++ + +G F++ + + A +A+ ++ G +
Sbjct: 303 TCYVGNLTPYTTPNDVVPLFQNFGYVVESRFQADRGFAFIKMDSHESAAMAICQMNGYNV 362
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 363 NGRPLKCSWG 372
>gi|302409198|ref|XP_003002433.1| nucleolysin TIA-1 [Verticillium albo-atrum VaMs.102]
gi|261358466|gb|EEY20894.1| nucleolysin TIA-1 [Verticillium albo-atrum VaMs.102]
Length = 443
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 35/163 (21%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N KGY GFV + D +RAM +NG
Sbjct: 63 VTEDVLRQIFETTGHVQNVKIIPDKNQ---KGYNYGFVEYDDPGAAARAMQTLNGRRVHE 119
Query: 56 -------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------V 96
+ SN+ IFVG L + V+D+ L + F+ FG + ++
Sbjct: 120 IRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVNDEILSQAFAAFGSVSEARVMWDMKTGR 179
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 180 SRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKGQP 222
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T++VG L + D+ LF +FG ++ + +G F++ + + A +A+ ++ G +
Sbjct: 267 TVYVGNLTPYTTPNDVVPLFQNFGFVVESRFQADRGFAFIKMESHEAAAMAICQMNGYNV 326
Query: 124 GKQTVRLSWGHN 135
+ ++ SWG +
Sbjct: 327 NGRPLKCSWGKD 338
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEV 113
+ N +++G LD V++ LR++F G + +VKI G GFV++ + A
Sbjct: 48 EPNKRALYIGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNQKGYNYGFVEYDDPGAAAR 107
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + +R++W + N + D NH+
Sbjct: 108 AMQTLNGRRV--HEIRVNWAYQ-SNTTSKEDTSNHF 140
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 22/120 (18%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRAMIEMN-----------------GSDGKSNNATIFVG 68
D T + GY +V + + + SRA+ E+N S KS + +FV
Sbjct: 49 DMVTKRSLGYAYVNYNNTQDASRAIEELNFMPVNGKPVRIMFSYRDPSIRKSGSGNLFVK 108
Query: 69 ALDSNVSDKDLRELFSHFGEILSVKIP-----VGKGCGFVQFANRKDAEVALQKLQGTAI 123
LD ++ +K L +LFS +G+ILS KI V KG GFVQF A A++K+ GT +
Sbjct: 109 NLDKSIDNKALHDLFSPYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTL 168
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTID-SNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
I N L + FS K+ +D SN +KG+GFV+F E+ A+ ++NG+
Sbjct: 114 IDNKALHDLFSPYGKILSCKIALDVSNV--SKGHGFVQFDTEDAAHTAIEKINGTTLHDK 171
Query: 58 -----------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----P 95
K NN +FV L +D+DL++LF FG I S +
Sbjct: 172 QLFVGPFVRRQERDPPASKFNN--VFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDG 229
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
K GFV F N +DA A++ L GT + + +S ++
Sbjct: 230 KSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRAQKKNERE 274
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 39 RFGDENERS---RAMIEMNGSDGKSNNAT-IFVGALDSNVSDKDLRELFSHFGEILSVKI 94
R +NER +A E D + + T +++ LD + D+ L+++FS FG + S K+
Sbjct: 266 RAQKKNEREAELKAKFEHERKDTEDKSPTNLYLKNLDDGIDDEKLKDMFSAFGNVTSCKV 325
Query: 95 ---PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
P+G KG GFV F+ A A+ ++ G IG +
Sbjct: 326 MRDPLGHSKGSGFVAFSTSDAALRAVAQMNGKMIGSK 362
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK---GCGFVQFANRKDAEVAL 115
+ ++VG LD +V++ + ++F G ++SV++ V K G +V + N +DA A+
Sbjct: 14 STALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASRAI 73
Query: 116 QKLQGTAIGKQTVRLSWGH 134
++L + + VR+ + +
Sbjct: 74 EELNFMPVNGKPVRIMFSY 92
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 27/140 (19%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
++T ++L E FS A +V D+ T + GY +V F + R M +MN
Sbjct: 120 EVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTDMNLYIIKGK 179
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS +FV L+ ++++K L + FS FG ILS K+ KG
Sbjct: 180 PVRLMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVITDDNGSKGY 239
Query: 101 GFVQFANRKDAEVALQKLQG 120
GFV F +R+ AE A+QK+ G
Sbjct: 240 GFVHFEHRESAERAIQKMNG 259
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 64/155 (41%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L + FS KV D N +KGYGFV F RA+ +MNG N+
Sbjct: 209 INNKSLYDAFSSFGNILSCKVITDDNG--SKGYGFVHFEHRESAERAIQKMNGI--LLND 264
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
IFVG S ++ + L ++F FG LSVK+
Sbjct: 265 LKIFVGHFKSRKDRESELGAQTREFTNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRD 324
Query: 95 --PVGKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ + G + G+Q
Sbjct: 325 DCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQ 359
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 40/156 (25%)
Query: 28 NTGHTKGYGFVRFGDENERSRAMIEMNGSD--------GKSNN----------------- 62
+ G +KG+GFV F + A+ MNG + G++
Sbjct: 325 DCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQ 384
Query: 63 --------ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKD 110
+++ LD ++ D++LR+ FS FG I S K+ + KG GFV F+ ++
Sbjct: 385 NRIVRYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVMMNNGRSKGFGFVCFSAPEE 444
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHI 146
A A+ ++ G + + + ++ K+ R H+
Sbjct: 445 ATTAVTEMNGRLVASKPLYVALAQ---RKEERKAHL 477
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEV 113
S A+++VG L V++ L E FS G ILS+++ G +V F + DAE
Sbjct: 107 STMASLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAER 166
Query: 114 ALQKLQGTAIGKQTVRLSWGH 134
+ + I + VRL W
Sbjct: 167 VMTDMNLYIIKGKPVRLMWSQ 187
>gi|380478106|emb|CCF43782.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 482
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N KGY GFV + D RAM +NG
Sbjct: 98 VTEDVLRQIFETTGHVQNVKIIPDKNA---KGYNYGFVEYDDPGAAERAMQTLNGRRVHQ 154
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 155 SEIRVNWAYQSNTSSKEDTSNHFHIFVGDLSNEVNDEILTQAFSAFGSVSEARVMWDMKT 214
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 215 GRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKGQP 259
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + +VKI K GFV++ + AE
Sbjct: 83 EPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAER 142
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + N + D NH+
Sbjct: 143 AMQTLNGRRVHQSEIRVNWAYQ-SNTSSKEDTSNHF 177
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 38/72 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + D+ LF +FG ++ + +G F++ + + A +A+ ++ G +
Sbjct: 304 TCYVGNLTPYTTPNDVVPLFQNFGYVVESRFQADRGFAFIKMDSHESAAMAICQMNGYNV 363
Query: 124 GKQTVRLSWGHN 135
+ ++ SWG +
Sbjct: 364 NGRPLKCSWGKD 375
>gi|303314025|ref|XP_003067021.1| oligouridylate binding protein ,putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106689|gb|EER24876.1| oligouridylate binding protein ,putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320039295|gb|EFW21229.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Coccidioides posadasii str. Silveira]
Length = 483
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N+ KG YGFV + D RAM +NG
Sbjct: 103 VTEDILRQIFETTGHVQSVKIIPDKNS---KGLNYGFVEYDDPGAAERAMQTLNGRRVHQ 159
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKI 94
+ SN+ IFVG L + V+D+ L + FS FG + +K
Sbjct: 160 SEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 219
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 220 GRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNWANQKGQP 264
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + SVKI K GFV++ + AE
Sbjct: 88 EPNKRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAER 147
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + N + D NH+
Sbjct: 148 AMQTLNGRRVHQSEIRVNWAYQSNNAN-KEDTSNHF 182
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ + +G FV+ ++A +A+ +L G +
Sbjct: 309 TCYVGNLTPYTTQNDLVPLFQNFGYVVETRFQADRGFAFVKMDTHENAAMAICQLNGYNV 368
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 369 NGRPLKCSWG 378
>gi|119174082|ref|XP_001239402.1| hypothetical protein CIMG_09023 [Coccidioides immitis RS]
Length = 485
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 35/165 (21%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N +KG YGFV + D RAM +NG
Sbjct: 103 VTEDILRQIFETTGHVQSVKIIPDKNF-QSKGLNYGFVEYDDPGAAERAMQTLNGRRVHQ 161
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKI 94
+ SN+ IFVG L + V+D+ L + FS FG + +K
Sbjct: 162 SEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 221
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 222 GRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNWANQKGQP 266
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-------PVGKGCGFVQFANRKDA 111
+ N ++VG LD V++ LR++F G + SVKI G GFV++ + A
Sbjct: 88 EPNKRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNFQSKGLNYGFVEYDDPGAA 147
Query: 112 EVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
E A+Q L G + + +R++W + N + D NH+
Sbjct: 148 ERAMQTLNGRRVHQSEIRVNWAYQSNNAN-KEDTSNHF 184
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ + +G FV+ ++A +A+ +L G +
Sbjct: 311 TCYVGNLTPYTTQNDLVPLFQNFGYVVETRFQADRGFAFVKMDTHENAAMAICQLNGYNV 370
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 371 NGRPLKCSWG 380
>gi|310798412|gb|EFQ33305.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 482
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N KGY GFV + D RAM +NG
Sbjct: 98 VTEDVLRQIFETTGHVQNVKIIPDKNA---KGYNYGFVEYDDPGAAERAMQTLNGRRVHQ 154
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 155 SEIRVNWAYQSNTSSKEDTSNHFHIFVGDLSNEVNDEILTQAFSAFGSVSEARVMWDMKT 214
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 215 GRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKGQP 259
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + +VKI K GFV++ + AE
Sbjct: 83 EPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAER 142
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + N + D NH+
Sbjct: 143 AMQTLNGRRVHQSEIRVNWAYQ-SNTSSKEDTSNHF 177
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + D+ LF +FG ++ + +G F++ + + A +A+ ++ G +
Sbjct: 304 TCYVGNLTPYTTPNDVVPLFQNFGYVVESRFQADRGFAFIKMDSHESAAMAICQMNGYNV 363
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 364 NGRPLKCSWG 373
>gi|406861752|gb|EKD14805.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 495
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N+ KG YGFV + D RAM +NG
Sbjct: 100 VTEDVLRQIFETTGHVQNVKIIPDKNS---KGFNYGFVEYDDPAAAERAMQTLNGRRVHQ 156
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 157 AEIRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 216
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R+DAE AL + G +G + +R +W + G
Sbjct: 217 GRSRGYGFVAFRERQDAEKALSSMDGEWLGSRAIRCNWANQKGQP 261
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + +VKI K GFV++ + AE
Sbjct: 85 EPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNSKGFNYGFVEYDDPAAAER 144
Query: 114 ALQKLQGTAIGKQTVRLSWGH--NPGNKQWRGDHI 146
A+Q L G + + +R++W + N NK+ +H
Sbjct: 145 AMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHF 179
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T++VG L + DL LF +FG ++ + +G FV+ ++A +A+ +L G +
Sbjct: 306 TVYVGNLTPYTTQNDLIPLFQNFGYVVETRFQADRGFAFVKMDTHENAAMAICQLSGYNV 365
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 366 NGRPLKCSWG 375
>gi|449266192|gb|EMC77278.1| ELAV-like protein 2 [Columba livia]
Length = 388
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 96 CKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 155
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 215
Query: 120 G--TAIGKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 216 GQKPPSAAEPITVKFANNPSQK 237
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 111 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 166
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S ++ D+ L+ELF +G+ LSVK+
Sbjct: 167 RKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTD 226
Query: 95 PVGK--GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P GK G GFV + +DA A++++ GT + +TV
Sbjct: 227 PTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTV 262
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
DIT ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 22 DITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGK 81
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 82 PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 141
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F + A+ A++K+ G + + V
Sbjct: 142 AFVHFETQDAADRAIEKMNGMLLNDRKV 169
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E F + KV D TG ++G+GFV + + ++A+ EMNG++ N
Sbjct: 202 DMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTE--LN 258
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
T+FVG LD + D+ LR+ FS F
Sbjct: 259 GKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 318
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 319 GSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 375
Query: 143 GDHINH 148
H+ +
Sbjct: 376 KAHLTN 381
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
A+++VG L ++++ L E FS G +LS+++ G +V F DAE AL
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 117 KLQGTAIGKQTVRLSWGH 134
+ + + +R+ W
Sbjct: 72 TMNFDVVKGKPIRIMWSQ 89
>gi|62088100|dbj|BAD92497.1| TIA1 cytotoxic granule-associated RNA-binding protein-like 1
isoform 2 variant [Homo sapiens]
Length = 183
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 37/150 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 5 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRKIRTNWATRKPPAPKSTQE 64
Query: 56 ------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFV 103
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV
Sbjct: 65 NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFV 124
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+F+ + A A+ + GT I V+ WG
Sbjct: 125 RFSTHESAAHAIVSVNGTTIEGHVVKCYWG 154
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 87 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 146
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI 94
+ + G +++ K+ +++ F V I
Sbjct: 147 HVVKCYWGKESPDMT-KNFQQVIRFFIAFFKVSI 179
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 35/154 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L ETFS KV +D N G+++G+GFV F +E++ A+ +NG
Sbjct: 149 IDNKALHETFSTFGEVLSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLE 207
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-- 97
+ K+N I+V +D +D++ +LFS +GEI+S +
Sbjct: 208 VYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAE 267
Query: 98 ---KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV F + A A+++L G Q +
Sbjct: 268 GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQAL 301
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 28/141 (19%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
+IT ++L + FS +V D+ T + GY +V + D +A+ E+N ++
Sbjct: 60 NITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGR 119
Query: 58 -------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
K + IF+ L + +K L E FS FGE+LS K+ + +G
Sbjct: 120 PCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRG 179
Query: 100 CGFVQFANRKDAEVALQKLQG 120
GFV F DA+ A++ + G
Sbjct: 180 FGFVHFKEESDAKDAIEAVNG 200
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 39/135 (28%)
Query: 30 GHTKGYGFVRFGDENERSRAMIEMNGSDGKSN---------------------------- 61
G KG+GFV F D N ++A+ E+NG + KS
Sbjct: 268 GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEK 327
Query: 62 -----NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDA 111
+F+ LD ++ D+ L+E F+ +G I S ++ KG GFV F++ ++A
Sbjct: 328 LAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEA 387
Query: 112 EVAL-QKLQGTAIGK 125
A+ +K Q GK
Sbjct: 388 TKAMTEKNQQIVAGK 402
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAE 112
++NNA+++VG LD N+++ L ++FS G I S+++ G +V + + + +
Sbjct: 46 ENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGK 105
Query: 113 VALQKLQGTAIGKQTVRLSW 132
A+Q+L I + R+ W
Sbjct: 106 KAIQELNYAEINGRPCRIMW 125
>gi|41054740|ref|NP_957426.1| nucleolysin TIAR [Danio rerio]
gi|33416339|gb|AAH55501.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Danio
rerio]
Length = 370
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 37/152 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 123 SDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSV 182
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG 101
+ N T++ G + S +++ +R+ FS FG+I+ +++ KG
Sbjct: 183 QDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPEKGYS 242
Query: 102 FVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
F++F++ + A A+ + GT I V+ WG
Sbjct: 243 FIRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 274
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T +++ + F++ T HT Y FV F + + + A+ MNG GK
Sbjct: 18 DVTENLILQLFTQIGPCKSCKMITEHTSNDPYCFVEFFEHRDAAAALAAMNGRKILGKEV 77
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ D+R F+ FG+I ++ K
Sbjct: 78 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSK 137
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 138 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 172
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG----FVQFANRKDAE 112
+ +S+ T++VG L +V++ + +LF+ G S K+ FV+F +DA
Sbjct: 2 EDESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEHTSNDPYCFVEFFEHRDAA 61
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
AL + G I + V+++W P ++ + D NH++
Sbjct: 62 AALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 97
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 28/152 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNG- 55
D+T ++L E F+ +V DS T + GY +V + + A+ IE+ G
Sbjct: 37 DVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALESLNYIEIKGH 96
Query: 56 -----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S +S IFV LD ++ K L + FSHFG ILS K+ V K
Sbjct: 97 PTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKR 156
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
GFV + N + A A++K+ G IG + V ++
Sbjct: 157 YGFVHYENEESAREAIEKVNGMLIGGKRVEVA 188
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRK 109
G + K + +++ LD + D+ L ELF FG I S K+ + +G GFV F N +
Sbjct: 298 GQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQ 357
Query: 110 DAEVALQKLQ 119
+A A+ +
Sbjct: 358 EATKAIAAMH 367
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK---GCGFVQFANRKDAEVA 114
++A+++VG L +V++ L E+F+ G + S+++ V + G +V + + +DAE A
Sbjct: 25 SSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAA 84
Query: 115 LQKLQGTAIGKQTVRLSWGH 134
L+ L I R+ W +
Sbjct: 85 LESLNYIEIKGHPTRIMWSN 104
Score = 38.5 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 27/131 (20%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I L +TFS KV +D+ +G +K YGFV + +E A+ ++NG
Sbjct: 126 IDTKSLYDTFSHFGPILSCKVAVDA-SGASKRYGFVHYENEESAREAIEKVNGMLIGGKR 184
Query: 56 -----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-GKGCGFV 103
+G+ ++V ++ +++ LR+ +GEI S+ + KG F
Sbjct: 185 VEVAPFLRKQDREGEEVFTNLYVRNFPADWNEEALRQFLEKYGEITSMMLKEDSKGRRFA 244
Query: 104 QFANRKDAEVA 114
F N K+ EVA
Sbjct: 245 -FVNYKEPEVA 254
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 34/162 (20%)
Query: 6 VSDITNSI-LQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+SD NS+ LQE F + +KV S+ G +KGYGFV+F E + A+ +NG
Sbjct: 109 LSDSINSLGLQELFKKFGNVLSSKVAT-SDDGKSKGYGFVQFESEESANAAIESLNGFTV 167
Query: 56 -------------SDGKSNNATI-----FVGALDSNVSDKDLRELFSHFGEILSVKIP-- 95
SD N I +V LD + ++ L+E FS FG+I S+ I
Sbjct: 168 GDKQIYVGKFVRKSDRVLANPDIKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRD 227
Query: 96 ---VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
V +G GF+ F N DA+ AL+ L G+ +G + + ++
Sbjct: 228 ENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQ 269
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 43/172 (25%)
Query: 14 LQETFSR-----AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG---------- 58
LQE FS + + G ++G+GF+ F + ++ RA+ +NGS
Sbjct: 209 LQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARA 268
Query: 59 -----------------------KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
K + ++V +D +V+D++LRE FS FG I S K+
Sbjct: 269 QKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLM 328
Query: 96 -----VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
+ KG GFV F+N +A+ A+ LQG + + L+ ++Q +
Sbjct: 329 RDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQ 380
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS----- 56
D+T+ L + FS ++ DS+TG + YG+V F + + A+ MN S
Sbjct: 24 DVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEVMNHSMLNGR 83
Query: 57 ------------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
KS +FV L +++ L+ELF FG +LS K+ KG
Sbjct: 84 AIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKG 143
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQF + + A A++ L G +G + +
Sbjct: 144 YGFVQFESEESANAAIESLNGFTVGDKQI 172
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 50 MIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGKGC--GFV 103
M ++ ++ A+++VG L +V+D L + FS F + SV+I G+ G+V
Sbjct: 1 MAAVSQPTAHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYV 60
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
F + +DA A++ + + + + +R+ W
Sbjct: 61 NFISPQDATNAIEVMNHSMLNGRAIRVMWSR 91
>gi|351694381|gb|EHA97299.1| ELAV-like protein 3, partial [Heterocephalus glaber]
Length = 344
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 66 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 125
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 126 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 185
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + +NP K
Sbjct: 186 QKPLGAAEPIPGEFANNPSQK 206
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 49 AMIEMNGS--DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GC 100
++ NG+ D K+N + V L N++ + + LF G+I S K+ K G
Sbjct: 23 PLLGTNGATDDSKTN---LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGY 79
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
GFV +++ DA+ A+ L G + +T+++S+
Sbjct: 80 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR 113
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 43/168 (25%)
Query: 7 SDITNSILQETFSR-----AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
SDIT ++LQE FS + V + G +KG+ FV + + ++ +AM MNG S
Sbjct: 200 SDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEAMNGLKFGSK 259
Query: 62 N---------------------------------ATIFVGALDSNVSDKDLRELFSHFGE 88
N + ++V +D +V+DK+LR+LFS G
Sbjct: 260 NLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGT 319
Query: 89 ILSVKIP-----VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
I SVK+ + KG GFV F+N ++A A++ G ++ + ++
Sbjct: 320 ITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIA 367
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 37/166 (22%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------ 56
I N+ L + F + +KV + S G +KGYGFV+F E + A+ ++NGS
Sbjct: 111 IDNAGLHDLFQKYGNILSSKVVM-SGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQ 169
Query: 57 -----------------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---- 95
D K N +++ LDS++++ L+E FS FG+I+S+ I
Sbjct: 170 IYVGKFVRKGDRILPGYDAKYTN--LYIKNLDSDITEALLQEKFSSFGKIISLVISKDDN 227
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+ KG FV + N DA A++ + G G + + ++ ++
Sbjct: 228 GLSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLYVARAQKKAERE 273
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 22/135 (16%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNG------------SDG 58
+T +V D T + YG+V F + + RAM +NG S
Sbjct: 36 KTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMKLKNNSYLNGKVIRVMWSHPDPSAR 95
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEV 113
KS +FV L ++ + L +LF +G ILS K+ + KG GFVQF + + A
Sbjct: 96 KSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEESANN 155
Query: 114 ALQKLQGTAIGKQTV 128
A++KL G+ +G + +
Sbjct: 156 AIEKLNGSTVGDKQI 170
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGC-GFVQFANRKDAEVALQ 116
A+++VG L S V D L E F+ F + SV++ + C G+V F +++DA A++
Sbjct: 12 ASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMK 71
Query: 117 KLQGTAIGKQTVRLSWGH 134
+ + + +R+ W H
Sbjct: 72 LKNNSYLNGKVIRVMWSH 89
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
++T+S L + F++ +V D +T + GYG+V + + + +RA+ +N
Sbjct: 41 NVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNK 100
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S KS A IF+ LD + K L + FS FG ILS K+ KG
Sbjct: 101 PLRIMYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKG 160
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQF + + A+ A+ KL G I + V
Sbjct: 161 YGFVQFDSEEAAQNAIDKLNGMLINDKQV 189
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 37/146 (25%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV D+ +G +KGYGFV+F E A+ ++NG
Sbjct: 130 IDHKALHDTFSSFGNILSCKVATDA-SGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQ 188
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----- 94
S+ K NN I+V L + +D+DL+ +F G I S +
Sbjct: 189 VYVGNFLRKQERDSALSNIKFNN--IYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDAD 246
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQG 120
K GFV F N DA A++ L G
Sbjct: 247 GKSKCFGFVNFENVDDAAKAVEALNG 272
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 40/151 (26%)
Query: 12 SILQE--TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--------GKSN 61
SI +E + A V D++ G +K +GFV F + ++ ++A+ +NG GK+
Sbjct: 228 SIFEEHGAITSAVVMRDAD-GKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQ 286
Query: 62 NAT------------------------IFVGALDSNVSDKDLRELFSHFGEILSVKI--- 94
+ +++ LD +V+D+ L+ELFS FG I S K+
Sbjct: 287 KKSERELELKGRFEQSLESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHD 346
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAI 123
P G +G GFV F+ ++A AL +L G +
Sbjct: 347 PSGISRGSGFVAFSTPEEASRALAELNGKMV 377
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG LD NV+D L +LF+ G+++SV++ G G+V ++N +DA AL
Sbjct: 32 SLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDV 91
Query: 118 LQGTAIGKQTVRLSWGH 134
L T + + +R+ + H
Sbjct: 92 LNFTPLNNKPLRIMYSH 108
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 28/153 (18%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--- 57
D+T +IL E F S +V DS T + GY +V + + A+ +N D
Sbjct: 40 PDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAALESLNYIDIKG 99
Query: 58 --------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP-----VGK 98
KS IFV LD ++ K + FSHFG ILS K+ V K
Sbjct: 100 HPTRIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTFSHFGPILSCKVAMDENGVSK 159
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
G GFV + + A+ A++K+ G IG + V +S
Sbjct: 160 GYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVS 192
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 46 RSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP-----VGKGC 100
+S+ + ++GS ++ +++ LD + +D+ L+ELF FG I S KI V +G
Sbjct: 295 KSQYISGLDGSIASKASSNLYIKNLDDSFTDESLQELFGQFGSITSCKIMRDASGVSRGF 354
Query: 101 GFVQFANRKDAEVAL 115
GFV F+ ++A A+
Sbjct: 355 GFVCFSRPEEATKAI 369
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVA 114
N+A+++VG L +V++ L E+F+ G + S+++ G +V + + +DAE A
Sbjct: 29 NSASLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAA 88
Query: 115 LQKLQGTAIGKQTVRLSW 132
L+ L I R+ W
Sbjct: 89 LESLNYIDIKGHPTRIMW 106
>gi|395514484|ref|XP_003761447.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Sarcophilus
harrisii]
Length = 347
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 G--TAIGKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPSATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 266 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 325
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 326 NGYRLGDRVLQVSFKTNKTHK 346
>gi|350629665|gb|EHA18038.1| hypothetical protein ASPNIDRAFT_176547 [Aspergillus niger ATCC
1015]
Length = 496
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 35/165 (21%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N ++KGY GFV F D RAM +NG
Sbjct: 102 VTEDILKQIFETTGHVVSVKIIPDKNF-NSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQ 160
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 161 SEIRVNWAYQSNSTNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 220
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DA+ AL + G +G + +R +W + G
Sbjct: 221 GRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIRCNWANQKGQP 265
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-------PVGKGCGFVQFANRKDA 111
+ N ++VG LD V++ L+++F G ++SVKI G GFV+F + A
Sbjct: 87 EPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNFNSKGYNYGFVEFDDPGAA 146
Query: 112 EVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
E A+Q L G I + +R++W + N + D NH+
Sbjct: 147 ERAMQTLNGRRIHQSEIRVNWAYQ-SNSTNKEDTSNHF 183
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ ++ +G F++ ++A +A+ +L G +
Sbjct: 310 TCYVGNLTPYTTQTDLVPLFQNFGYVIETRLQADRGFAFIKMDTHENAAMAICQLNGYNV 369
Query: 124 GKQTVRLSWGHN 135
+ ++ SWG +
Sbjct: 370 NGRPLKCSWGKD 381
>gi|340905400|gb|EGS17768.1| putative polyadenylated RNA protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 485
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 65/154 (42%), Gaps = 27/154 (17%)
Query: 6 VSDITNSILQETFSRAKVTIDSNTGHT-KGYGFVRFGDENERSRAMIEMNG--------- 55
D+ I + T V I + H YGFV + D RAM +NG
Sbjct: 105 TEDVLRQIFETTGHVQSVKIIPDKNHRGYNYGFVEYDDPGAAERAMQTLNGRRVHQNEIR 164
Query: 56 -----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKIPVGK 98
+ SN+ IFVG L + V+D+ L + FS FG I +K +
Sbjct: 165 VNWAYQSNNANKEDTSNHFHIFVGDLSNEVNDEVLWQAFSAFGSISEARVMWDMKTGRSR 224
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
G GFV F R DAE AL + G +G + +R +W
Sbjct: 225 GYGFVAFRERADAEKALSSMDGEWLGSRAIRCNW 258
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + SVKI G GFV++ + AE
Sbjct: 89 EPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNHRGYNYGFVEYDDPGAAER 148
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + N + D NH+
Sbjct: 149 AMQTLNGRRVHQNEIRVNWAYQSNNAN-KEDTSNHF 183
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ ++ +G F++ + ++A +A+ +L G +
Sbjct: 310 TCYVGNLTPYTTQNDLVPLFQNFGYVVECRMQADRGFAFIKMDSHENAAMAICQLNGYMV 369
Query: 124 GKQTVRLSWG--HNPGNKQ 140
+ ++ SWG NP + Q
Sbjct: 370 NGRPLKCSWGKDRNPNHHQ 388
>gi|17537143|ref|NP_496718.1| Protein TIAR-2 [Caenorhabditis elegans]
gi|6425313|emb|CAB60356.1| Protein TIAR-2 [Caenorhabditis elegans]
Length = 434
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 39/161 (24%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
IT+ L F+ +AK+ + G Y FV F D N+ + A+ NG +
Sbjct: 51 ITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQATLALQSHNGRELLEKE 107
Query: 58 --------------GKSNNAT-----IFVGALDSNVSDKDLRELFSHFGEILSVKI---- 94
+S T +FVG L S + LRE F FGE+ KI
Sbjct: 108 MHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDN 167
Query: 95 --PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GKG GFV + R+DAE A+ ++ G +G++T+R +W
Sbjct: 168 NTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWA 208
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 60/186 (32%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFG--DENERS----------R 48
S+I ++ L+E F S AK+ D+NT KGYGFV + ++ ER+ R
Sbjct: 141 SEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGR 200
Query: 49 AMIEMNGSDGK-----------------------------------------SNNATIFV 67
I N + K ++N +++V
Sbjct: 201 RTIRTNWATRKPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAADNTSVYV 260
Query: 68 GALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQT 127
G + +N+ + ++R F FG I V+ +G FV+F ++ A A+ ++ IG Q
Sbjct: 261 GNI-ANLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQI 319
Query: 128 VRLSWG 133
VR SWG
Sbjct: 320 VRCSWG 325
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---VGKGCGFVQFANRKDAE 112
+ G + T+FV LD ++D+ L LF+ G ++ KI + FV+F++ A
Sbjct: 33 ASGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQAT 92
Query: 113 VALQKLQGTAIGKQTVRLSWGHNP 136
+ALQ G + ++ + ++W P
Sbjct: 93 LALQSHNGRELLEKEMHVTWAFEP 116
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 27/160 (16%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
++T ++L E FS A +V D+ + + GYG+V F + A+ MN
Sbjct: 29 EVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTMNFDVLHGK 88
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGC 100
S +S +FV LD+++ +K+L +LF+ FG ILS K+ KG
Sbjct: 89 PVRIMWCHRDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGTILSCKVVSDENGPKGH 148
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
GFV F R+ A+ A++++ G+ + ++ V + P ++
Sbjct: 149 GFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQRE 188
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 44/167 (26%)
Query: 10 TNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD------ 57
T+ L E FS+ K+ D ++G +KG+GF+RF + RA+ E+NG
Sbjct: 211 TDEYLLEIFSQYGPLSSVKIMTD-DSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKI 269
Query: 58 ---------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
K + ++FV L + D+ LR++F+ FG +
Sbjct: 270 YVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAESTDDEHLRKIFAPFGTVT 329
Query: 91 SVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S K+ V KG GFV F++R++A+ A++++ G + + + +S+
Sbjct: 330 SAKVIVKGGRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSYA 376
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN-------------- 62
T KV D N KG+GFV F +A+ EMNGS K
Sbjct: 132 TILSCKVVSDENG--PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREE 189
Query: 63 ---------ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANR 108
++V +D+ L E+FS +G + SVKI KG GF++F
Sbjct: 190 ERRAKMEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECH 249
Query: 109 KDAEVALQKLQGTAIGKQTVRLS 131
DA+ A++++ G G + + +S
Sbjct: 250 ADAKRAIEEVNGKQFGGRKIYVS 272
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVAL 115
+A+++VG L V++ L E FS G ILSV++ G G+V F +DA AL
Sbjct: 18 SASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHAL 77
Query: 116 QKLQGTAIGKQTVRLSWGH 134
+ + + VR+ W H
Sbjct: 78 NTMNFDVLHGKPVRIMWCH 96
>gi|328875992|gb|EGG24356.1| RNA recognition motif-containing protein RRM [Dictyostelium
fasciculatum]
Length = 770
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 24/133 (18%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------DGKSNN 62
AKV +D G++ GYGFVRF E A+ M+G + K +
Sbjct: 117 AKVMVDPK-GNSYGYGFVRFSSPIESKLAIETMDGKQLMHKKLLCRLSYLYSNHNSKYPS 175
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-----CGFVQFANRKDAEVALQK 117
+FV L + ++D LR+LF FGEI+ K+ V K GFV+F N DA A+Q
Sbjct: 176 NNLFVKPLPATLTDGQLRDLFQGFGEIVECKVMVDKKGNSKLAGFVRFDNEADATKAIQA 235
Query: 118 LQGTAIGKQTVRL 130
+ G +G + L
Sbjct: 236 MNGAKMGADSTPL 248
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVA 114
++ +FV L S V D L +LFS +G + SV++ + KG GFV+F NR DA +
Sbjct: 626 HDTNLFVFHLPSFVDDVYLYKLFSQYGPLQSVRVIMDKETGENKGYGFVKFQNRDDAVTS 685
Query: 115 LQKLQGTAIGKQTVRLSW 132
L ++ G +G++ +++ +
Sbjct: 686 LNQMNGMQVGQKYLKVKF 703
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 14/114 (12%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PV 96
+GD+ + + IE + +FV L + D +L LF+ FG+++S K+ P
Sbjct: 72 YGDQGDDYESSIE-------KDQTNVFVKYLPNEFGDSELHNLFTQFGKVMSAKVMVDPK 124
Query: 97 GK--GCGFVQFANRKDAEVALQKLQGTAI--GKQTVRLSWGHNPGNKQWRGDHI 146
G G GFV+F++ ++++A++ + G + K RLS+ ++ N ++ +++
Sbjct: 125 GNSYGYGFVRFSSPIESKLAIETMDGKQLMHKKLLCRLSYLYSNHNSKYPSNNL 178
Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+V +D TG KGYGFV+F + ++ ++ +MNG
Sbjct: 658 RVIMDKETGENKGYGFVKFQNRDDAVTSLNQMNG 691
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 28/148 (18%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-------- 54
+++S LQ FS A+V D T H+ GYG+V F D +A+ +N
Sbjct: 24 VSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLNYESLMGRP 83
Query: 55 ---------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGC 100
S KS IF+ LD ++ K+L + FS FG ILS KI + KG
Sbjct: 84 IRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGY 143
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + AE A++K+ I + V
Sbjct: 144 GFVHFEKEECAERAIEKINNMIIRDRVV 171
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 44/160 (27%)
Query: 11 NSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN---- 61
N L+E F+ ++ + + G +KG+GFV F D + A+ M+G + +
Sbjct: 205 NEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYC 264
Query: 62 ------------------------------NATIFVGALDSNVSDKDLRELFSHFGEILS 91
N ++V LD N+ DK L E FS G I S
Sbjct: 265 ARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITS 324
Query: 92 VKI-----PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
K+ KG GFV FAN + A A+ + GT IG +
Sbjct: 325 AKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSK 364
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 33/142 (23%)
Query: 14 LQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------ 55
L +TFS K+ +D N G +KGYGFV F E RA+ ++N
Sbjct: 117 LYDTFSFFGRILSCKIVMDEN-GQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGK 175
Query: 56 ----SDGKSNNATI-----FVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCG 101
++ KS + ++ ++ L+E+F+ FGEI S + KG G
Sbjct: 176 FIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFG 235
Query: 102 FVQFANRKDAEVALQKLQGTAI 123
FV F + AE A++ + G I
Sbjct: 236 FVCFLDPDHAENAVKTMHGKEI 257
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVAL 115
N++++VG L VSD L+ FS G +LS ++ G G+V F + K AE AL
Sbjct: 12 NSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQAL 71
Query: 116 QKLQGTAIGKQTVRLSWGH 134
+ L ++ + +R+ W
Sbjct: 72 EVLNYESLMGRPIRIMWSQ 90
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+I + L+E FS AKV D+N +KG+GFV F + + +RA+ +MNG+
Sbjct: 306 NIDDKRLEEAFSVHGSITSAKVMKDANN-RSKGFGFVCFANPEQAARAVTDMNGT 359
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 28/150 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAM--IEMNGSDG 58
S ++ + L E FS+ +V D T + GY +V + + + +RA+ + N +G
Sbjct: 33 STVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALELLNFNAVNG 92
Query: 59 K---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--K 98
K S A IF+ LD ++ +K L + F+ FG ILS K+ P G K
Sbjct: 93 KPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATDPSGQSK 152
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
G GFVQF + A+ A++K+ G + + V
Sbjct: 153 GYGFVQFEQEESAQTAIEKVNGMLLNDKQV 182
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 38/144 (26%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------- 57
+ V + N G +K +GFV F ++ ++A+ +NG
Sbjct: 231 SAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWYVGRAQKKSEREAELRA 290
Query: 58 ----------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGF 102
K +++ LD + D+ LRE+FS +G I+S K+ P G +G GF
Sbjct: 291 KFEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGF 350
Query: 103 VQFANRKDAEVALQKLQGTAIGKQ 126
V F++ +A A+ ++ G +G +
Sbjct: 351 VAFSSPDEATRAVTEMNGKMVGSK 374
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVAL 115
+ +++VG L+S VS+ L E+FS G+++S+++ G +V + N +DA AL
Sbjct: 23 STSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRAL 82
Query: 116 QKLQGTAIGKQTVRLSWGH 134
+ L A+ + +R+ + H
Sbjct: 83 ELLNFNAVNGKPIRIMFSH 101
>gi|169614620|ref|XP_001800726.1| hypothetical protein SNOG_10456 [Phaeosphaeria nodorum SN15]
gi|160702784|gb|EAT81850.2| hypothetical protein SNOG_10456 [Phaeosphaeria nodorum SN15]
Length = 506
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 24 TIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG--------------------SDGKSN 61
T+ S + ++KG YGFV + D R M +NG + SN
Sbjct: 122 TVSSPSVNSKGFNYGFVEYDDPGAAERGMATLNGRRIHNNEIRVNWAYQSNNTAKEDTSN 181
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEI------LSVKIPVGKGCGFVQFANRKDAEVAL 115
+ IFVG L + V+D+ L + FS FG + +K +G GFV F +R DAE AL
Sbjct: 182 HFHIFVGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADAERAL 241
Query: 116 QKLQGTAIGKQTVRLSWGHNPG 137
+ G +G + +R +W + G
Sbjct: 242 SSMDGEWLGSRAIRCNWANQKG 263
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------------PVGKGCGFVQFANR 108
N ++VG LD V++ LR++F G + SVKI G GFV++ +
Sbjct: 84 NKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKTVSSPSVNSKGFNYGFVEYDDP 143
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
AE + L G I +R++W + N + D NH++
Sbjct: 144 GAAERGMATLNGRRIHNNEIRVNWAYQSNNTA-KEDTSNHFH 184
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L S DL LF +FG + + +G F++ ++A +A+ +L G +
Sbjct: 310 TCYVGNLTPYTSQSDLVPLFQNFGYVTETRFQSDRGFAFIKMDTHENAAMAICQLNGYNV 369
Query: 124 GKQTVRLSWGHN-PGNKQWRG 143
+ ++ SWG + P Q+ G
Sbjct: 370 NGRPLKCSWGKDRPPTGQFEG 390
Score = 38.5 bits (88), Expect = 0.83, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 6 VSDITNSILQETF----------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
V D++N + E S A+V D TG ++GYGFV F D + RA+ M+G
Sbjct: 187 VGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADAERALSSMDG 246
>gi|398407815|ref|XP_003855373.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
gi|339475257|gb|EGP90349.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
Length = 401
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 35/167 (20%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N +KG YGFV + D RAM +NG
Sbjct: 80 VTEDVLKQIFETTGHVQNVKIIPDKNF-QSKGFNYGFVEYDDPGAAERAMQTLNGRRVHQ 138
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 139 QEIRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGTVSEARVMWDMKT 198
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQW 141
+G GFV F +R DAE AL + G +G + +R +W + G +
Sbjct: 199 GRSRGYGFVAFRDRADAEKALSSMDGEWLGSRAIRCNWANQKGQPSF 245
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK-------GCGFVQFANRKDA 111
+ N ++VG LD V++ L+++F G + +VKI K GFV++ + A
Sbjct: 65 EPNKRALYVGGLDPRVTEDVLKQIFETTGHVQNVKIIPDKNFQSKGFNYGFVEYDDPGAA 124
Query: 112 EVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
E A+Q L G + +Q +R++W + N + D NH+
Sbjct: 125 ERAMQTLNGRRVHQQEIRVNWAYQ-SNTTSKEDTSNHF 161
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 15 QETFSRAKVTIDSNTGHTKGYG-FVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSN 73
Q +FS+ + + T YG F + +S MI ++ T +VG L
Sbjct: 242 QPSFSQQQAMVQMGMTPTTPYGGHHSFPTQGAQSYEMIVQQTPQWQT---TCYVGNLTPY 298
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+ DL LF +FG + + +G F++ ++A A+ +L G + + ++ SWG
Sbjct: 299 TTQNDLVPLFQNFGYVTETRFQSDRGFAFIKMDTHENAANAICQLSGYQVNGRPLKCSWG 358
Query: 134 HN-PGNKQWRG 143
+ P Q+ G
Sbjct: 359 KDRPPTGQFDG 369
>gi|296423176|ref|XP_002841131.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637365|emb|CAZ85322.1| unnamed protein product [Tuber melanosporum]
Length = 498
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N+ KGY GF+ + D RAM +NG
Sbjct: 97 VTEEILKQIFETTGHVQNVKIIPDKNS---KGYNYGFIEYDDPGAAERAMQTLNGRRIHQ 153
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ +N+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 154 AEIRVNWAYQSNQSSKEDTTNHFHIFVGDLSNEVNDEVLMQAFSTFGSVSEARVMWDMKT 213
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 214 GRSRGYGFVAFRDRADAEKALSSMDGEWLGSRAIRCNWANQKGQP 258
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 10 TNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGA 69
TN I T + +++ T T GFVR RA E N ++VG
Sbjct: 50 TNPI--PTAITSPMSVSGVTSPTSAGGFVR--------RAAPE-------PNKRALYVGG 92
Query: 70 LDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEVALQKLQGTAIG 124
LD V+++ L+++F G + +VKI K GF+++ + AE A+Q L G I
Sbjct: 93 LDPRVTEEILKQIFETTGHVQNVKIIPDKNSKGYNYGFIEYDDPGAAERAMQTLNGRRIH 152
Query: 125 KQTVRLSWGHNPGNKQWRGDHINHW 149
+ +R++W + N+ + D NH+
Sbjct: 153 QAEIRVNWAYQ-SNQSSKEDTTNHF 176
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 15 QETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNV 74
Q + S+ T YG F +S MI ++ T +VG L
Sbjct: 257 QPSISQQAAMAAMGMTPTTPYGHHNFPTHGVQSYDMIVQQTPQWQT---TCYVGNLTPYT 313
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+ DL LF +FG ++ + +G FV+ ++A +A+ +L G + + ++ SWG
Sbjct: 314 TQNDLVPLFQNFGYVVETRFQADRGFAFVKMDTHENAAMAICQLSGYNVNGRPLKCSWGK 373
Query: 135 N 135
+
Sbjct: 374 D 374
>gi|395514482|ref|XP_003761446.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Sarcophilus
harrisii]
Length = 389
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 97 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 156
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 157 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 216
Query: 120 G--TAIGKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 217 GQKPPSATEPITVKFANNPSQK 238
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 368 NGYRLGDRVLQVSFKTNKTHK 388
>gi|355745275|gb|EHH49900.1| hypothetical protein EGM_00635 [Macaca fascicularis]
Length = 289
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 92 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 151
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 152 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 211
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 212 GQKPSGATEPITVKFANNPSQK 233
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 28/148 (18%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-------- 54
+++S L E FS+A +V D + + GY +V F + + +RA+ +N
Sbjct: 57 VSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEVLNFAVLNNKP 116
Query: 55 ---------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGC 100
S +S +A IF+ LD + +K L E FS FG ILS K+ + KG
Sbjct: 117 IRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAMDEAGQSKGF 176
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQ+ + A+ A++ L G I + V
Sbjct: 177 GFVQYEKEEAAQNAIKSLNGMLINDKPV 204
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 42/151 (27%)
Query: 30 GHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGA-------------------- 69
G ++ +GF+ F + + SRA+ E+NG K N+ +VG
Sbjct: 262 GKSRCFGFINFENPDAASRAVQELNGK--KINDKEWYVGRAQKKSEREMELKRRFEQSLK 319
Query: 70 ---------------LDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRK 109
LD ++ D LRELFS+FG+I S K+ + KG GFV F+ R+
Sbjct: 320 DAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTRE 379
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+A AL ++ G I + + +++ +++
Sbjct: 380 EASQALTEMNGKMISGKPLYVAFAQRKEDRK 410
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 33/150 (22%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L ETFS KV +D G +KG+GFV++ E A+ +NG
Sbjct: 145 IDNKTLHETFSSFGTILSCKVAMDE-AGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKP 203
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG---- 97
S K+ +FV L + + +DL ++F +G I S + +G
Sbjct: 204 VFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGK 263
Query: 98 -KGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
+ GF+ F N A A+Q+L G I +
Sbjct: 264 SRCFGFINFENPDAASRAVQELNGKKINDK 293
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG L+ +VSD L ELFS G+++SV++ G +V F+N DA AL+
Sbjct: 47 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEV 106
Query: 118 LQGTAIGKQTVRLSWGH-NPGNKQ 140
L + + +R+ + + +P +++
Sbjct: 107 LNFAVLNNKPIRVMYSNRDPSSRR 130
>gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum]
Length = 1145
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 21/118 (17%)
Query: 34 GYGFVRFGDENERSRAMIEMNG--SDGK-------------SNNATIFVGALDSNVSDKD 78
GYGFV+F + A+ MNG +D K S +A +++ L+ +V+ +D
Sbjct: 757 GYGFVKFVHSESAAAAIESMNGHMTDSKTIKVSYATPTSQQSTHANLYINRLEPHVTKED 816
Query: 79 LRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
L E FS FGE++ +I + + GFV F+NR+DA AL + G I +Q+ +
Sbjct: 817 LAEAFSKFGELVETRILMDLNTNTSRCVGFVHFSNRRDALAALSAMNGANISQQSTPI 874
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK-----------------GCGFVQFAN 107
+ V + + +++DL++LF FGEI S K+ + G GFV+F +
Sbjct: 706 LIVHNIPKHFTNEDLKDLFEEFGEIESYKVVANRKAPSTLLPQQPPPQANMGYGFVKFVH 765
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+ A A++ + G +T+++S+ P ++Q
Sbjct: 766 SESAAAAIESMNGHMTDSKTIKVSYA-TPTSQQ 797
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 40/168 (23%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S ++ D+ L+ELF +G+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMD 225
Query: 95 PVGK--GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
P GK G GFV + +DA A++ + GT + +TV + +Q
Sbjct: 226 PTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQ 273
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
DIT ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTMNFDVVKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F + A+ A++K+ G + + V
Sbjct: 141 AFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E F + KV +D TG ++G+GFV + + ++A+ +MNG++ N
Sbjct: 201 DMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDMNGTE--LN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
T+FVG LD + D+ LR+ FS F
Sbjct: 258 GKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 318 GSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 374
Query: 143 GDHINH 148
H+ +
Sbjct: 375 KAHLTN 380
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + G A+++VG L ++++ L E FS G +LS+++ G +V F+
Sbjct: 1 MNTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + + + +R+ W
Sbjct: 61 QPADAERALDTMNFDVVKGKPIRIMWSQ 88
>gi|378726298|gb|EHY52757.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 481
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 35/164 (21%)
Query: 9 ITNSILQETFS------RAKVTIDSNTG-HTKG--YGFVRFGDENERSRAMIEMNG---- 55
+T +L++ F K+ D N +KG YGFV + D RAM +NG
Sbjct: 92 VTEDVLKQIFETTGHVVSVKIIPDKNAQFSSKGFNYGFVEYDDPGAAERAMTTLNGRRVH 151
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVK 93
+ SN+ IFVG L + V+D+ L + FS FG + +K
Sbjct: 152 QAEIRVNWAYQSNSTNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMK 211
Query: 94 IPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
+G GFV F R DAE AL + G +G + +R++W + G
Sbjct: 212 TGRSRGYGFVAFRERADAEKALASMDGEWLGSRAIRVNWANQKG 255
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC---------GFVQFANRKDA 111
N ++VG LD V++ L+++F G ++SVKI K GFV++ + A
Sbjct: 79 NKRALYVGGLDPRVTEDVLKQIFETTGHVVSVKIIPDKNAQFSSKGFNYGFVEYDDPGAA 138
Query: 112 EVALQKLQGTAIGKQTVRLSWGH--NPGNKQWRGDHINHWNG 151
E A+ L G + + +R++W + N NK+ +H + + G
Sbjct: 139 ERAMTTLNGRRVHQAEIRVNWAYQSNSTNKEDTSNHFHIFVG 180
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 65/195 (33%)
Query: 6 VSDITNSILQE----------TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAM----- 50
V D++N + E + S A+V D TG ++GYGFV F + + +A+
Sbjct: 179 VGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALASMDG 238
Query: 51 -------IEMNGSDGKSN------------------------------------------ 61
I +N ++ K
Sbjct: 239 EWLGSRAIRVNWANQKGQPSISQQQAMAAMGMSPTTPFGHHHFPTQGIQSYEMVVNQTPA 298
Query: 62 -NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
T +VG L + DL LF +FG ++ + +G F++ ++A +A+ +L G
Sbjct: 299 WQTTCYVGNLTPYTTQADLVPLFQNFGYVVETRFQSDRGFAFIKMDTHENAAMAICQLSG 358
Query: 121 TAIGKQTVRLSWGHN 135
+ + ++ SWG +
Sbjct: 359 YNVNGRPLKCSWGKD 373
>gi|340522219|gb|EGR52452.1| predicted protein [Trichoderma reesei QM6a]
Length = 477
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N KGY GFV + D RAM +NG
Sbjct: 86 VTEDVLRQIFETTGHVQNVKIIPDKNA---KGYNYGFVEYDDPGAAERAMQTLNGRRVHQ 142
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D L + FS FG + ++
Sbjct: 143 SEIRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVNDDILMQAFSAFGSVSEARVMWDMKT 202
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 203 GRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKGQP 247
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + +VKI K GFV++ + AE
Sbjct: 71 EPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAER 130
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + N + D NH+
Sbjct: 131 AMQTLNGRRVHQSEIRVNWAYQ-SNTTSKEDTSNHF 165
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + D+ LF +FG ++ + +G F++ + ++A +A+ ++ G +
Sbjct: 292 TCYVGNLTPYTTPNDVVPLFQNFGFVMESRFQADRGFAFIKMDSHENAAMAICQMNGYNV 351
Query: 124 GKQTVRLSWGHN 135
+ ++ SWG +
Sbjct: 352 NGRPLKCSWGKD 363
>gi|395819370|ref|XP_003783066.1| PREDICTED: ELAV-like protein 2 [Otolemur garnettii]
Length = 388
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 97 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 156
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 157 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 216
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 217 GQKPPGATEPITVKFANNPSQK 238
>gi|115473341|ref|NP_001060269.1| Os07g0615400 [Oryza sativa Japonica Group]
gi|23237933|dbj|BAC16506.1| putative oligouridylate binding protein [Oryza sativa Japonica
Group]
gi|113611805|dbj|BAF22183.1| Os07g0615400 [Oryza sativa Japonica Group]
gi|215737207|dbj|BAG96136.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767365|dbj|BAG99593.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637457|gb|EEE67589.1| hypothetical protein OsJ_25126 [Oryza sativa Japonica Group]
Length = 427
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 57/187 (30%)
Query: 7 SDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
++T+S L FS A+V D TG ++GYGFV F ++ + A+ ++NG
Sbjct: 159 PEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGS 218
Query: 56 -----------------------------------------SDGKSNNA---TIFVGALD 71
D NN T++VG L
Sbjct: 219 RQIRCNWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLA 278
Query: 72 SNVSDKDLRELFSHFGE--ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129
V+ L LF G I V+I +GKG GFV+++N +A +A+Q G +G + ++
Sbjct: 279 HEVTQDVLHRLFHALGAGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIK 338
Query: 130 LSWGHNP 136
SWG+ P
Sbjct: 339 CSWGNKP 345
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 26/151 (17%)
Query: 9 ITNSILQETFSRAKVTIDSNT--GHTKGYGFVRFGDENERSRAMIEMNG----------- 55
+T ++L+E F + YGFV + D + +++ +NG
Sbjct: 76 VTEALLREVFQSTGLVEGCKLIRKEKSSYGFVDYYDRRSAALSILTLNGKQIFGQLIRVN 135
Query: 56 ---SDGKSNNAT----IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGF 102
+ G+ + T IFVG L V+D L FS + ++ +G GF
Sbjct: 136 WAYASGQREDTTDHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGF 195
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V F N++DA+ A+ L G +G + +R +W
Sbjct: 196 VSFRNQQDAQSAINDLNGQWLGSRQIRCNWA 226
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI--PVGKGCGFVQFANRKDAEVALQKLQGT 121
+++VG + V++ LRE+F G + K+ GFV + +R+ A +++ L G
Sbjct: 66 SVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSSYGFVDYYDRRSAALSILTLNGK 125
Query: 122 AIGKQTVRLSWGHNPGNKQWRGDHINHWNG 151
I Q +R++W + G ++ DH N + G
Sbjct: 126 QIFGQLIRVNWAYASGQREDTTDHFNIFVG 155
>gi|58865762|ref|NP_001012096.1| TIA1 cytotoxic granule-associated RNA binding protein [Rattus
norvegicus]
gi|56268852|gb|AAH87064.1| TIA1 cytotoxic granule-associated RNA binding protein [Rattus
norvegicus]
gi|149036619|gb|EDL91237.1| rCG56007, isoform CRA_c [Rattus norvegicus]
Length = 375
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 181 TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
F++F++ + A A+ + GT I V+ WG
Sbjct: 241 SFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 75 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 134
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGK 59
++T+S L + F++ +V D + + GYG+V +G+ + +RA+ +N + GK
Sbjct: 37 NVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVLNFTPLHGK 96
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S N IF+ LD + K L + FS FG ILS K+ V KG
Sbjct: 97 PIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKG 156
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQ+ + + A+ A++KL G + + V
Sbjct: 157 YGFVQYDSEEAAQKAIEKLNGMLLNDKQV 185
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV +DS +G +KGYGFV++ E +A+ ++NG
Sbjct: 126 IDHKALHDTFSAFGNILSCKVAVDS-SGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQ 184
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK 98
+ K+ +FV L + +++LR++F FG I SV + GK
Sbjct: 185 VYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGK 244
Query: 99 G-C-GFVQFANRKDAEVALQKLQG 120
C GFV F N +DA A++ L G
Sbjct: 245 SRCFGFVNFENAEDAARAVEALNG 268
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 47/165 (28%)
Query: 6 VSDITNSILQETFSR---------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG- 55
V +++ S L+E + + + G ++ +GFV F + + +RA+ +NG
Sbjct: 210 VKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGY 269
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ KS +++ LD ++SD+ L+ELF
Sbjct: 270 KLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEKLKELF 329
Query: 84 SHFGEILSVKI-----PVGKGCGFVQFANRKDAEVALQKLQGTAI 123
S +G I S K+ V KG GFV F+N ++A AL ++ G +
Sbjct: 330 SPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMV 374
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 54 NGSDGKSNN--ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQF 105
N + G +N +++VG LD NV+D L +LF+ G+++SV++ G G+V +
Sbjct: 16 NNAGGVNNQFVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNY 75
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
N +DA AL+ L T + + +R+ + +
Sbjct: 76 GNPQDAARALEVLNFTPLHGKPIRIMYSN 104
>gi|344250807|gb|EGW06911.1| Nucleolysin TIA-1 [Cricetulus griseus]
Length = 387
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S +N T++ G + S ++++ +R+ FS FG+IL +++ KG
Sbjct: 192 TYELNTKQLSYDEVVSQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQILEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
F++F + + A A+ + GT I V+ WG
Sbjct: 252 SFIRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ + KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVMLEDGRSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
GFV F++ ++A A+ ++ G +G + + ++ K+ R H+ +
Sbjct: 140 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAHLTN 185
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S ++ D+ L+ELFS +G+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV F +DA A++++ G I + V
Sbjct: 226 PTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMV 261
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E FS+ KV D TG +KG+GFV F + ++A+ EMNG D N
Sbjct: 201 DMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKD--IN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
+FVG LD + D+ LR+ FS F
Sbjct: 258 GKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 374
Query: 143 GDHINH 148
H+ +
Sbjct: 375 KAHLTN 380
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F + A+ A++K+ G + + V
Sbjct: 141 AFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 38.9 bits (89), Expect = 0.81, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
M+ + A+++VG L +V++ L E FS G +LS+++ G +V F
Sbjct: 1 MDAAGSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|327271181|ref|XP_003220366.1| PREDICTED: ELAV-like protein 4-like [Anolis carolinensis]
Length = 410
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 119 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 178
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 179 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 238
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 239 GQKPSGATEPITVKFANNPSQK 260
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 297 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 356
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 357 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 409
>gi|432875366|ref|XP_004072806.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oryzias latipes]
Length = 386
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ M G
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQHMGGQWLGGRQIRTNWATRKPPAPKT 180
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S +N T++ G + S ++++ +R+ FS FG+I+ V++ KG
Sbjct: 181 TYESNSKHLSFEEVMSQSSPSNCTVYCGGVSSGLTEQLMRQTFSAFGQIMEVRVFPDKGY 240
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT+I V+ WG
Sbjct: 241 SFVRFNSHESAAHAIVSVNGTSIDGHVVKCYWG 273
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T ++ + F++ K+ +D T Y FV F D + ++ MNG GK
Sbjct: 17 DVTEPLILQVFTQIGPCKSCKMIVD--TAGNDPYCFVEFYDHRHAAASLAAMNGRKIMGK 74
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 75 EVKVNWATTPTSQKKDTSNHFHVFVGDLSPEITTEDVKAAFAPFGRISDARVVKDMATGK 134
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q + G +G + +R +W
Sbjct: 135 SKGYGFVSFFNKWDAENAIQHMGGQWLGGRQIRTNWA 171
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-----CGFVQFANRKDAEVALQKL 118
T++VG L +V++ + ++F+ G S K+ V C FV+F + + A +L +
Sbjct: 8 TLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIVDTAGNDPYC-FVEFYDHRHAAASLAAM 66
Query: 119 QGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
G I + V+++W P ++ + D NH++
Sbjct: 67 NGRKIMGKEVKVNWATTPTSQ--KKDTSNHFH 96
>gi|149036617|gb|EDL91235.1| rCG56007, isoform CRA_a [Rattus norvegicus]
Length = 386
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
F++F++ + A A+ + GT I V+ WG
Sbjct: 252 SFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>gi|321474916|gb|EFX85880.1| hypothetical protein DAPPUDRAFT_20224 [Daphnia pulex]
Length = 346
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 40/173 (23%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
+I L++ F S +V D T +KGYGFV F +++ A+ MNG
Sbjct: 95 PEIETHTLRDAFAAFGEISDCRVVRDPQTLKSKGYGFVSFVKKSDAENAIAGMNGQWLGT 154
Query: 57 ------------------------------DGKSNNATIFVGALDSNVSDKDLRELFSHF 86
S N T++ G L +++ L+++F +
Sbjct: 155 RAIRTNWATRKPPAPKDAGSKPMSYEEVFGQSSSTNCTVYCGNLAQGSTEEALQKIFGPY 214
Query: 87 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
G+I +++ KG F++FA+++ A A+ + T + Q V+ SWG PG
Sbjct: 215 GQIQEIRVFKDKGYAFIRFASKESATQAIVSVHNTDLNGQNVKCSWGKEPGEP 267
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 7 SDITNSILQETFSRAKVTIDSNTGHTKG---YGFVRFGDENERSRAMIEMN-----GSDG 58
+T ++ F + H G Y FV F + + + A+ MN G +
Sbjct: 7 PSVTEELIMVLFGQIGTVKGCKIIHEPGHEPYCFVEFAEHHSAAAALAAMNKRNCMGREM 66
Query: 59 KSNNAT---------------IFVGALDSNVSDKDLRELFSHFGEILSVKI---PV---G 97
K N AT IFVG L + LR+ F+ FGEI ++ P
Sbjct: 67 KVNWATSPGNAPKQDTSKHFHIFVGDLSPEIETHTLRDAFAAFGEISDCRVVRDPQTLKS 126
Query: 98 KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
KG GFV F + DAE A+ + G +G + +R +W
Sbjct: 127 KGYGFVSFVKKSDAENAIAGMNGQWLGTRAIRTNW 161
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 40/168 (23%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S ++ D+ L+ELF +G+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMD 225
Query: 95 PVGK--GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
P GK G GFV + +DA A++ + GT + +TV + +Q
Sbjct: 226 PTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQ 273
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
DIT ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTMNFDVVKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F + A+ A++K+ G + + V
Sbjct: 141 AFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E F + KV +D TG ++G+GFV + + ++A+ +MNG++ N
Sbjct: 201 DMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDMNGTE--LN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
T+FVG LD + D+ LR+ FS F
Sbjct: 258 GKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 318 GSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 374
Query: 143 GDHINH 148
H+ +
Sbjct: 375 KAHLTN 380
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + G A+++VG L ++++ L E FS G +LS+++ G +V F+
Sbjct: 1 MNTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + + + +R+ W
Sbjct: 61 QPADAERALDTMNFDVVKGKPIRIMWSQ 88
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S +++D+ L+ELF +G+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTD 225
Query: 95 PVGK--GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P GK G GF+ + +DA A++ + GT + +TV
Sbjct: 226 PTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTV 261
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
DIT ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTMNFDVVKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F + A+ A++K+ G + + V
Sbjct: 141 AFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E F + KV D TG ++G+GF+ + + ++A+ +MNG++ N
Sbjct: 201 DMNDERLKELFDKYGKTLSVKVMTDP-TGKSRGFGFISYEKHEDANKAVEDMNGTE--LN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
T+FVG LD + D+ LR+ FS F
Sbjct: 258 GKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 318 GSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 374
Query: 143 GDHINH 148
H+ +
Sbjct: 375 KAHLTN 380
Score = 41.6 bits (96), Expect = 0.098, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + G A+++VG L ++++ L E FS G +LS+++ G +V F+
Sbjct: 1 MNTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + + + +R+ W
Sbjct: 61 QPADAERALDTMNFDVVKGKPIRIMWSQ 88
>gi|395730528|ref|XP_003775743.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 366
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>gi|227204263|dbj|BAH56983.1| AT1G11650 [Arabidopsis thaliana]
Length = 271
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 38/57 (66%), Gaps = 7/57 (12%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+D+T+ IL ETF AKV ID TG TKGYGFVRF DE+E+ RAM EMNG
Sbjct: 163 AADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNG 219
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------G 58
AKV + TG +GYGF+ F R + N +
Sbjct: 91 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD 150
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDA 111
S + TIFVG L ++V+D L E F + + + K+ + KG GFV+F++ +
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 211 IRAMTEMNGVPCSTRPMRI 229
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE++S K+ K G GF++FA+ AE LQ
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 118 LQGTAIGK---QTVRLSWG 133
I Q RL+W
Sbjct: 123 FNNAPIPSFPDQLFRLNWA 141
>gi|221316769|ref|NP_001138247.1| ELAV-like protein 4 isoform 3 [Homo sapiens]
gi|14280325|gb|AAK57539.1| HUD4 [Homo sapiens]
Length = 383
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 92 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 151
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 152 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 211
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 212 GQKPSGATEPITVKFANNPSQK 233
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 362 NGYRLGDRVLQVSFKTNKAHK 382
>gi|330802792|ref|XP_003289397.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
gi|325080515|gb|EGC34067.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
Length = 628
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 34/155 (21%)
Query: 7 SDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+D T+ L + FS +KV ID G++ GYGFVRF + NE A+ E++G
Sbjct: 103 NDFTDEDLAKLFSAYGNVISSKVMIDPK-GNSYGYGFVRFSNPNESQAAIKELDGFQFQN 161
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---- 96
S SNN +F+ L ++V+D+ LR+LF +G+I+ K+ +
Sbjct: 162 KKLLCRLSNLYTNLNSKNPSNN--LFIKPLPADVTDEQLRKLFEPYGKIVECKVMLDQNG 219
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
K GFV+F N +A A+ + G I K + L
Sbjct: 220 QSKFAGFVRFFNDSEAASAIDAMNGIKITKDSYPL 254
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 52 EMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK--GCGFVQFA 106
++ G + ++ IFV L ++ +D+DL +LFS +G ++S K+ P G G GFV+F+
Sbjct: 83 QVGGEILEKDSTNIFVKHLPNDFTDEDLAKLFSAYGNVISSKVMIDPKGNSYGYGFVRFS 142
Query: 107 NRKDAEVALQKLQG 120
N +++ A+++L G
Sbjct: 143 NPNESQAAIKELDG 156
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVA 114
N+ +FV L + D L +LFS +G++ SV++ KG GFV+F NR+DA
Sbjct: 509 NDTNLFVFHLPPFIDDAYLFQLFSQYGKLQSVRVITDKDTGENKGYGFVKFYNREDAFKC 568
Query: 115 LQKLQGTAIGKQTVRL 130
+++ G IG + +++
Sbjct: 569 QKEMNGFRIGSKYLKV 584
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+V D +TG KGYGFV+F + + + EMNG
Sbjct: 541 RVITDKDTGENKGYGFVKFYNREDAFKCQKEMNG 574
>gi|384491350|gb|EIE82546.1| hypothetical protein RO3G_07251 [Rhizopus delemar RA 99-880]
Length = 348
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 36/162 (22%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----DGKSNNAT------- 64
T S A V D +G ++G+GFV F D+ + RA+ MNG + N AT
Sbjct: 142 TMSEAHVMWDPLSGKSRGFGFVAFRDKTDAERAIATMNGEWLGTRPIRCNWATQKGQTAM 201
Query: 65 ------------------------IFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
I+VG + NVS DL + F FG + VK +G
Sbjct: 202 PAPQPGQQLPYEVVVQQTPAYVTSIYVGNIPLNVSQNDLVQPFQRFGYVQEVKFQADRGF 261
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
FV+ ++A A+ LQ +I +LSWG + W+
Sbjct: 262 AFVKMDTHENAANAIVHLQNMSINGNVTKLSWGKDRPPPGWQ 303
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 40/169 (23%)
Query: 9 ITNSILQETFSRA----KVTIDSNTGHTK----GYGFVRFGDENERSRAMIEMNG----- 55
+T+++L E F+ V I S H YGFV F D +A+ +MNG
Sbjct: 29 VTDTMLNEIFTTVGQVVSVKIISVRKHNNFGAVNYGFVEFADPRVAEQAIQDMNGRKIFN 88
Query: 56 ---------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI 94
+ +N+ +FVG L + ++D+ L + FS FG + +
Sbjct: 89 YEIRANWAQPSANINPPLQMTKEDTTNHFHVFVGDLAAEINDEKLAQAFSEFGTMSEAHV 148
Query: 95 ---PVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
P+ +G GFV F ++ DAE A+ + G +G + +R +W G
Sbjct: 149 MWDPLSGKSRGFGFVAFRDKTDAERAIATMNGEWLGTRPIRCNWATQKG 197
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 51 IEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK--------GCGF 102
+ N ++ + TI+VG LD V+D L E+F+ G+++SVKI + GF
Sbjct: 6 VTSNVAETTNPATTIYVGNLDQRVTDTMLNEIFTTVGQVVSVKIISVRKHNNFGAVNYGF 65
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWGH-----NPGNKQWRGDHINHW 149
V+FA+ + AE A+Q + G I +R +W NP + + D NH+
Sbjct: 66 VEFADPRVAEQAIQDMNGRKIFNYEIRANWAQPSANINPPLQMTKEDTTNHF 117
>gi|348554577|ref|XP_003463102.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cavia porcellus]
gi|354468154|ref|XP_003496532.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cricetulus griseus]
Length = 383
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 92 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 151
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 152 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 211
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 212 GQKPSGATEPITVKFANNPSQK 233
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 362 NGYRLGDRVLQVSFKTNKAHK 382
>gi|348566571|ref|XP_003469075.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Cavia porcellus]
Length = 388
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVSQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>gi|221316773|ref|NP_001138249.1| ELAV-like protein 4 isoform 5 [Homo sapiens]
gi|114556458|ref|XP_001135525.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 9 [Pan troglodytes]
gi|332219805|ref|XP_003259048.1| PREDICTED: ELAV-like protein 4 isoform 3 [Nomascus leucogenys]
gi|397518908|ref|XP_003829617.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pan paniscus]
gi|402854507|ref|XP_003891909.1| PREDICTED: ELAV-like protein 4 isoform 3 [Papio anubis]
gi|426329577|ref|XP_004025815.1| PREDICTED: ELAV-like protein 4 isoform 3 [Gorilla gorilla gorilla]
gi|119627250|gb|EAX06845.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_e [Homo sapiens]
gi|221041752|dbj|BAH12553.1| unnamed protein product [Homo sapiens]
Length = 369
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 78 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 137
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 138 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 197
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 198 GQKPSGATEPITVKFANNPSQK 219
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 348 NGYRLGDRVLQVSFKTNKAHK 368
>gi|395855039|ref|XP_003799979.1| PREDICTED: ELAV-like protein 4 isoform 2 [Otolemur garnettii]
Length = 383
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 92 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 151
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 152 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 211
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 212 GQKPSGATEPITVKFANNPSQK 233
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 362 NGYRLGDRVLQVSFKTNKAHK 382
>gi|291383147|ref|XP_002708097.1| PREDICTED: ELAV-like 2-like isoform 2 [Oryctolagus cuniculus]
Length = 376
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 97 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 156
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 157 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 216
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 217 GQKPPGATEPITVKFANNPSQK 238
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 295 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 354
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 355 NGYRLGDRVLQVSFKTNKTHK 375
>gi|254281259|ref|NP_001156869.1| ELAV-like protein 4 isoform c [Mus musculus]
Length = 356
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 78 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 137
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 138 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 197
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 198 GQKPSGATEPITVKFANNPSQK 219
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 275 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 334
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 335 NGYRLGDRVLQVSFKTNKAHK 355
>gi|119627248|gb|EAX06843.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_c [Homo sapiens]
Length = 356
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 78 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 137
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 138 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 197
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 198 GQKPSGATEPITVKFANNPSQK 219
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 275 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 334
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 335 NGYRLGDRVLQVSFKTNKAHK 355
>gi|307194503|gb|EFN76795.1| ELAV-like protein 2 [Harpegnathos saltator]
Length = 349
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 23/140 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D +G + GYGFV + + +A+ +NG S A ++
Sbjct: 57 KLIRDKLSGQSLGYGFVNYHRPEDAEKAISTLNGLRLQNKTIKVSYARPSSEAIKGANLY 116
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L N++ +DL LFS +G I++ +I + KG GF++F R +AE A+Q+L G
Sbjct: 117 VSGLPKNMAQQDLENLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRVEAERAIQELNG 176
Query: 121 TAI--GKQTVRLSWGHNPGN 138
T + + + + +NP N
Sbjct: 177 TIPKGSSEPITVKFANNPSN 196
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQKL 118
+ V L +++ ++R LFS GE+ S K+ K G GFV + +DAE A+ L
Sbjct: 29 LIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRPEDAEKAISTL 88
Query: 119 QGTAIGKQTVRLSWGHNPGNKQWRGDHI 146
G + +T+++S+ P ++ +G ++
Sbjct: 89 NGLRLQNKTIKVSYAR-PSSEAIKGANL 115
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + SVK+ KG GFV N ++A VA+Q L
Sbjct: 268 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYEEAVVAIQSL 327
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 328 NGYTLGNRVLQVSFKTN 344
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67
+++ D+ TG +KG GF+RF E RA+ E+NG+ K ++ I V
Sbjct: 142 SRILCDNITGLSKGVGFIRFDQRVEAERAIQELNGTIPKGSSEPITV 188
>gi|255934068|ref|XP_002558315.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582934|emb|CAP81139.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 496
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 35/165 (21%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N TKG YGFV F D RAM +NG
Sbjct: 102 VTEDILKQIFETTGHVVSVKIIPDKNF-TTKGHNYGFVEFDDPGAAERAMQTLNGRRIHQ 160
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 161 SEIRVNWAYQSNSTSKEDTSNHFHIFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMKT 220
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R +A+ AL + G +G + +R +W + G
Sbjct: 221 GRSRGYGFVAFRDRAEADKALNSMDGEWLGSRAIRCNWANQKGQP 265
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-------PVGKGCGFVQFANRKDA 111
+ N ++VG LD V++ L+++F G ++SVKI G GFV+F + A
Sbjct: 87 EPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNFTTKGHNYGFVEFDDPGAA 146
Query: 112 EVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
E A+Q L G I + +R++W + N + D NH+
Sbjct: 147 ERAMQTLNGRRIHQSEIRVNWAYQ-SNSTSKEDTSNHF 183
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 15 QETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNV 74
Q + S+ + + T +G F +S M+ ++ T +VG L
Sbjct: 264 QPSISQQQALVAMGMTPTTPFGHHHFPTHGIQSYDMVAQQTPQWQT---TCYVGNLTPYT 320
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+ DL LF +FG +L ++ +G FV+ + ++A A+ +L G + + ++ SWG
Sbjct: 321 TQNDLVPLFQNFGYVLETRLQADRGFAFVKMDSHENAASAICQLNGYNVNGRPLKCSWG 379
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++ + +L + FS A+V D TG ++GYGFV F D E +A+ M+G
Sbjct: 193 EVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRAEADKALNSMDG 246
>gi|194207476|ref|XP_001492529.2| PREDICTED: ELAV-like protein 4 isoform 2 [Equus caballus]
Length = 383
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 92 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 151
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 152 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 211
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 212 GQKPSGATEPITVKFANNPSQK 233
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 362 NGYRLGDRVLQVSFKTNKAHK 382
>gi|149693653|ref|XP_001492549.1| PREDICTED: ELAV-like protein 4 isoform 3 [Equus caballus]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>gi|221316771|ref|NP_001138248.1| ELAV-like protein 4 isoform 4 [Homo sapiens]
gi|114556460|ref|XP_001135439.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 8 [Pan troglodytes]
gi|332219809|ref|XP_003259050.1| PREDICTED: ELAV-like protein 4 isoform 5 [Nomascus leucogenys]
gi|395855043|ref|XP_003799981.1| PREDICTED: ELAV-like protein 4 isoform 4 [Otolemur garnettii]
gi|397518910|ref|XP_003829618.1| PREDICTED: ELAV-like protein 4 isoform 5 [Pan paniscus]
gi|402854511|ref|XP_003891911.1| PREDICTED: ELAV-like protein 4 isoform 5 [Papio anubis]
gi|426329581|ref|XP_004025817.1| PREDICTED: ELAV-like protein 4 isoform 5 [Gorilla gorilla gorilla]
gi|14280323|gb|AAK57538.1| HUD3 [Homo sapiens]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>gi|406602740|emb|CCH45698.1| Nuclear localization sequence-binding protein [Wickerhamomyces
ciferrii]
Length = 467
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 40/165 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGK-------------SNNA-- 63
A+V + TG ++GYG+V F ++ +A+ E G DG+ SNN
Sbjct: 264 ARVIFERATGKSRGYGYVDFDSKSAAEKALKEYQGREIDGRPINLDMSTGKPHASNNRSN 323
Query: 64 ---------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGF 102
T+F+G L N + +L E+FS +G I+SV+IP KG G+
Sbjct: 324 DRASKFGDTPSAPSDTLFLGNLSFNANRDNLSEVFSEYGSIVSVRIPTHPDTEQPKGFGY 383
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRL--SWGHNPGNKQWRGDH 145
VQ+ + +A+ AL+ L G I + VRL S + N+ + GD
Sbjct: 384 VQYGSVDEAKAALEALNGEYIEGRPVRLDFSAPRDNSNRSFGGDR 428
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQ 116
AT+FVG L ++ D+ L+ F G ++S ++ GK G G+V F ++ AE AL+
Sbjct: 235 ATLFVGRLSWSIDDEWLKREFEPLGGVISARVIFERATGKSRGYGYVDFDSKSAAEKALK 294
Query: 117 KLQGTAIGKQTVRL 130
+ QG I + + L
Sbjct: 295 EYQGREIDGRPINL 308
>gi|390465924|ref|XP_002750851.2| PREDICTED: ELAV-like protein 4 isoform 1 [Callithrix jacchus]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>gi|355557990|gb|EHH14770.1| hypothetical protein EGK_00744 [Macaca mulatta]
Length = 385
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
>gi|207080284|ref|NP_001128867.1| DKFZP459N111 protein [Pongo abelii]
gi|390458025|ref|XP_003732040.1| PREDICTED: ELAV-like protein 2 [Callithrix jacchus]
gi|402897269|ref|XP_003911691.1| PREDICTED: ELAV-like protein 2 isoform 5 [Papio anubis]
gi|403272644|ref|XP_003928162.1| PREDICTED: ELAV-like protein 2 isoform 4 [Saimiri boliviensis
boliviensis]
gi|426361469|ref|XP_004047933.1| PREDICTED: ELAV-like protein 2 isoform 5 [Gorilla gorilla gorilla]
gi|55731642|emb|CAH92527.1| hypothetical protein [Pongo abelii]
Length = 389
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 97 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 156
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 157 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 216
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 217 GQKPPGATEPITVKFANNPSQK 238
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 368 NGYRLGDRVLQVSFKTNKTHK 388
>gi|608543|gb|AAA96945.1| ribonucleoprotein [Xenopus laevis]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGAAEPITVKFANNPSQK 216
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 253 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 312
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 313 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 365
>gi|73977009|ref|XP_532585.2| PREDICTED: ELAV-like protein 4 isoform 1 [Canis lupus familiaris]
gi|291398932|ref|XP_002715154.1| PREDICTED: ELAV-like 4-like isoform 5 [Oryctolagus cuniculus]
gi|426215486|ref|XP_004002003.1| PREDICTED: ELAV-like protein 4 isoform 3 [Ovis aries]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>gi|119578987|gb|EAW58583.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_b [Homo sapiens]
Length = 373
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 82 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 141
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 142 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 201
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 202 GQKPPGATEPITVKFANNPSQK 223
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 260 AYGVKRFSPMTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVT 317
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+VK+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 318 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 372
>gi|2801552|gb|AAC40080.1| RNA binding protein Elavl4 [Mus musculus]
Length = 346
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPSGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 265 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 325 NGYRLGDRVLQVSFKTNKAHK 345
>gi|395730526|ref|XP_003775742.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 402
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 111 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 170
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 171 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 230
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 231 GQKPSGATEPITVKFANNPSQK 252
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 289 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 348
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 349 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 401
>gi|354491615|ref|XP_003507950.1| PREDICTED: ELAV-like protein 2 isoform 3 [Cricetulus griseus]
Length = 356
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 78 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 137
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 138 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 197
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 198 GQKPPGATEPITVKFANNPSQK 219
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 275 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 334
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 335 NGYRLGDRVLQVSFKTNKTHK 355
>gi|297664975|ref|XP_002810888.1| PREDICTED: ELAV-like protein 4 isoform 1 [Pongo abelii]
Length = 369
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 78 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 137
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 138 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 197
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 198 GQKPSGATEPITVKFANNPSQK 219
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 348 NGYRLGDRVLQVSFKTNKAHK 368
>gi|119578990|gb|EAW58586.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_e [Homo sapiens]
Length = 374
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 82 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 141
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 142 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 201
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 202 GQKPPGATEPITVKFANNPSQK 223
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 293 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 352
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 353 NGYRLGDRVLQVSFKTNKTHK 373
>gi|15020254|gb|AAK74152.1| ELAV-like neuronal protein-3 [Mus musculus]
Length = 348
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 267 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 326
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 327 NGYRLGDRVLQVSFKTN 343
>gi|221316767|ref|NP_001138246.1| ELAV-like protein 4 isoform 2 [Homo sapiens]
gi|384475927|ref|NP_001245109.1| ELAV-like protein 4 [Macaca mulatta]
gi|114556464|ref|XP_001135692.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 11 [Pan troglodytes]
gi|332219803|ref|XP_003259047.1| PREDICTED: ELAV-like protein 4 isoform 2 [Nomascus leucogenys]
gi|395855037|ref|XP_003799978.1| PREDICTED: ELAV-like protein 4 isoform 1 [Otolemur garnettii]
gi|397518904|ref|XP_003829615.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pan paniscus]
gi|402854505|ref|XP_003891908.1| PREDICTED: ELAV-like protein 4 isoform 2 [Papio anubis]
gi|426329575|ref|XP_004025814.1| PREDICTED: ELAV-like protein 4 isoform 2 [Gorilla gorilla gorilla]
gi|14280327|gb|AAK57540.1| HUD1 [Homo sapiens]
gi|380810346|gb|AFE77048.1| ELAV-like protein 4 isoform 2 [Macaca mulatta]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>gi|905387|gb|AAA70417.1| Hel-N2 [Homo sapiens]
Length = 346
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A++ L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIRSL 324
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 325 NGYRLGDRVLQVSFKTN 341
>gi|73977005|ref|XP_860272.1| PREDICTED: ELAV-like protein 4 isoform 15 [Canis lupus familiaris]
Length = 380
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>gi|254281262|ref|NP_001156871.1| ELAV-like protein 4 isoform d [Mus musculus]
gi|73977013|ref|XP_860413.1| PREDICTED: ELAV-like protein 4 isoform 17 [Canis lupus familiaris]
gi|291398928|ref|XP_002715152.1| PREDICTED: ELAV-like 4-like isoform 3 [Oryctolagus cuniculus]
gi|354468152|ref|XP_003496531.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cricetulus griseus]
gi|426215484|ref|XP_004002002.1| PREDICTED: ELAV-like protein 4 isoform 2 [Ovis aries]
Length = 371
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 258 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 317
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 318 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 370
>gi|45382273|ref|NP_990161.1| ELAV-like protein 4 [Gallus gallus]
gi|5739519|gb|AAD50508.1|AF176675_1 RNA-binding protein HuD [Gallus gallus]
Length = 371
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
>gi|291398930|ref|XP_002715153.1| PREDICTED: ELAV-like 4-like isoform 4 [Oryctolagus cuniculus]
Length = 402
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 111 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 170
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 171 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 230
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 231 GQKPSGATEPITVKFANNPSQK 252
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 289 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 348
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 349 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 401
>gi|15020256|gb|AAK74153.1| ELAV-like neuronal protein-2 [Mus musculus]
Length = 347
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 266 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 325
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 326 NGYRLGDRVLQVSFKTN 342
>gi|179537|gb|AAA58396.1| brain protein [Homo sapiens]
gi|14280329|gb|AAK57541.1| HUDPRO1 [Homo sapiens]
gi|119627247|gb|EAX06842.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_b [Homo sapiens]
Length = 380
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S ++ D+ L+ELFS +G+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV F +DA A++++ G I + V
Sbjct: 226 PTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMV 261
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E FS+ KV D TG +KG+GFV F + ++A+ EMNG D N
Sbjct: 201 DMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKD--IN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
+FVG LD + D+ LR+ FS F
Sbjct: 258 GKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 318 GAITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 374
Query: 143 GDHINH 148
H+ +
Sbjct: 375 KAHLTN 380
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F + A+ A++K+ G + + V
Sbjct: 141 AFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 39.7 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L +V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|62739311|gb|AAH94189.1| Elavl2-a protein [Xenopus laevis]
Length = 359
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 66 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 125
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 126 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 185
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 186 GQKPPGATEPITVKFANNPSQK 207
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 338 NGYRLGDRVLQVSF 351
>gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Xenopus (Silurana) tropicalis]
Length = 374
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 96 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 155
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 215
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 216 GQKPPGATEPITVKFANNPSQK 237
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 293 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 352
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 353 NGYRLGDRVLQVSF 366
>gi|397521309|ref|XP_003830739.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan paniscus]
gi|397521311|ref|XP_003830740.1| PREDICTED: ELAV-like protein 2 isoform 3 [Pan paniscus]
gi|397521313|ref|XP_003830741.1| PREDICTED: ELAV-like protein 2 isoform 4 [Pan paniscus]
Length = 346
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 325 NGYRLGDRVLQVSFKTN 341
>gi|390465926|ref|XP_003733492.1| PREDICTED: ELAV-like protein 4 isoform 5 [Callithrix jacchus]
gi|403258123|ref|XP_003921628.1| PREDICTED: ELAV-like protein 4 isoform 4 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>gi|351714346|gb|EHB17265.1| Nucleolysin TIA-1 isoform p40 [Heterocephalus glaber]
Length = 386
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVSQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>gi|348041233|ref|NP_775431.2| ELAV-like protein 2 [Rattus norvegicus]
gi|149044491|gb|EDL97750.1| rCG53485, isoform CRA_b [Rattus norvegicus]
Length = 388
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 97 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 156
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 157 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 216
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 217 GQKPPGATEPITVKFANNPSQK 238
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 275 AYGVKRFSPMTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVT 332
Query: 91 SVKIP------VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+VK+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 333 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 387
>gi|440909067|gb|ELR59018.1| ELAV-like protein 2 [Bos grunniens mutus]
Length = 388
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 96 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 155
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 215
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 216 GQKPPGATEPITVKFANNPSQK 237
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>gi|432103090|gb|ELK30412.1| ELAV-like protein 2 [Myotis davidii]
Length = 416
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 125 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 184
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 185 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 244
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 245 GQKPPGATEPITVKFANNPSQK 266
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 303 AYGVKRFSPMTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVT 360
Query: 91 SVKIP------VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
+VK+ KG GFV N +A +A+ L G +G + +++S+ N
Sbjct: 361 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 411
>gi|46592818|ref|NP_997568.1| ELAV-like protein 2 isoform 1 [Mus musculus]
gi|29294744|gb|AAH49125.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
gi|34849537|gb|AAH58393.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 373
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 82 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 141
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 142 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 201
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 202 GQKPPGATEPITVKFANNPSQK 223
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 260 AYGVKRFSPMTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVT 317
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+VK+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 318 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 372
>gi|521144|gb|AAA69698.1| ELAV-like neuronal protein 1 [Homo sapiens]
Length = 359
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPGHPGTG--WCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+VK+ KG GFV N +A +A++ L G +G + +++S+ N +K
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIRSLNGYRLGDRVLQVSFKTNKTHK 358
>gi|397521307|ref|XP_003830738.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan paniscus]
Length = 359
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+VK+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
>gi|390465922|ref|XP_003733491.1| PREDICTED: ELAV-like protein 4 isoform 4 [Callithrix jacchus]
gi|403258121|ref|XP_003921627.1| PREDICTED: ELAV-like protein 4 isoform 3 [Saimiri boliviensis
boliviensis]
Length = 402
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 111 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 170
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 171 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 230
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 231 GQKPSGATEPITVKFANNPSQK 252
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 289 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 348
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 349 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 401
>gi|390465920|ref|XP_003733490.1| PREDICTED: ELAV-like protein 4 isoform 3 [Callithrix jacchus]
gi|403258119|ref|XP_003921626.1| PREDICTED: ELAV-like protein 4 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>gi|351713507|gb|EHB16426.1| ELAV-like protein 4 [Heterocephalus glaber]
Length = 385
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
>gi|326925350|ref|XP_003208879.1| PREDICTED: ELAV-like protein 4-like [Meleagris gallopavo]
Length = 379
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 88 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 147
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 148 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 207
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 208 GQKPSGATEPITVKFANNPSQK 229
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 298 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 357
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 358 NGYRLGDRVLQVSFKTNKTHK 378
>gi|297664977|ref|XP_002810889.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pongo abelii]
Length = 380
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>gi|221042398|dbj|BAH12876.1| unnamed protein product [Homo sapiens]
Length = 332
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 41 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 100
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 101 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 160
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 161 GQKPSGATEPITVKFANNPSQK 182
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 219 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 278
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 279 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 331
>gi|281349018|gb|EFB24602.1| hypothetical protein PANDA_005072 [Ailuropoda melanoleuca]
gi|351703220|gb|EHB06139.1| ELAV-like protein 2 [Heterocephalus glaber]
gi|355567720|gb|EHH24061.1| Hu-antigen B [Macaca mulatta]
gi|355753294|gb|EHH57340.1| Hu-antigen B [Macaca fascicularis]
gi|431914785|gb|ELK15810.1| ELAV-like protein 2 [Pteropus alecto]
Length = 387
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 96 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 155
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 215
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 216 GQKPPGATEPITVKFANNPSQK 237
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 274 AYGVKRFSPMTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVT 331
Query: 91 SVKIP------VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+VK+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 332 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 386
>gi|49119672|gb|AAH72716.1| Zgc:91918 [Danio rerio]
Length = 360
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + + + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS FG I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A VA+ L
Sbjct: 279 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 338
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+T L++ FS+ +++ +D TG ++G GF+RF E A+ +NG
Sbjct: 136 MTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGAT 195
Query: 63 ATIFVGALDSNVSDKDLRELFSHF 86
I V +N S K + L SH
Sbjct: 196 EPITV-KFANNPSQKSSQALLSHL 218
>gi|432099588|gb|ELK28729.1| ELAV-like protein 4 [Myotis davidii]
Length = 405
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 23/134 (17%)
Query: 29 TGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIFVGALDSN 73
TG + GYGFV + D N+ +A+ +NG S +A ++V L
Sbjct: 141 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKT 200
Query: 74 VSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQGTAI--GK 125
+S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 201 MSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAT 260
Query: 126 QTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 261 EPITVKFANNPSQK 274
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFA 106
M+G IFV L + L +LF FG + +VK+ KG GFV
Sbjct: 312 MSGLXXXXXXXXIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMT 371
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSW 132
N +A +A+ L G +G++ +++S+
Sbjct: 372 NYDEAAMAIASLNGYRLGERVLQVSF 397
>gi|84662764|ref|NP_001033787.1| ELAV-like protein 4 isoform b [Mus musculus]
gi|291398924|ref|XP_002715150.1| PREDICTED: ELAV-like 4-like isoform 1 [Oryctolagus cuniculus]
gi|426215488|ref|XP_004002004.1| PREDICTED: ELAV-like protein 4 isoform 4 [Ovis aries]
gi|26347767|dbj|BAC37532.1| unnamed protein product [Mus musculus]
gi|112180554|gb|AAH52451.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Mus musculus]
Length = 380
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 22/121 (18%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-----------------GSDGKSNNAT 64
+V D +G + GYG+V F E +RA+ +N S KS A
Sbjct: 65 RVCRDILSGVSLGYGYVNFYSRQEATRALEALNFTPLIGKYIRVMFSNRDPSLRKSGRAN 124
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 119
+FV L+ N+ K+L E+FS FG ILS K+ KG GFVQ+ + AE A+ L
Sbjct: 125 LFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLN 184
Query: 120 G 120
G
Sbjct: 185 G 185
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 32/150 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
+I + L E FS KV DS G +KGYGFV++ E A+ +NG +N
Sbjct: 133 NIDSKNLYEIFSSFGAILSCKVATDS-AGQSKGYGFVQYETEESAEAAINGLNGM--LAN 189
Query: 62 NATIFVGA------------------LDSNVSDKDLRELFSHFGEILSVKI-----PVGK 98
N +FVG L + S+ DLR+ F+ FGEI S + K
Sbjct: 190 NRKMFVGLHMRRRDREVKFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASK 249
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + A A++K G AIG +T+
Sbjct: 250 CFGFVNFKKPEFAIEAVEKANGKAIGDKTL 279
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEV 113
K N +++ +D ++D+ L++LF FG++ S K+ V KG GFV FA + +
Sbjct: 308 KPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQR 367
Query: 114 ALQKLQGTAIGKQ 126
A+ ++ G +GK+
Sbjct: 368 AINRMNGRIVGKK 380
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
A+++VG L V + L LFS + +V++ V G G+V F +R++A AL+
Sbjct: 35 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 94
Query: 117 KLQGTAIGKQTVRL 130
L T + + +R+
Sbjct: 95 ALNFTPLIGKYIRV 108
>gi|359067954|ref|XP_002707879.2| PREDICTED: LOW QUALITY PROTEIN: eLAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)-like [Bos
taurus]
Length = 346
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + ++ S+ N
Sbjct: 325 NGYRLGDRVLQXSFKTN 341
>gi|344248615|gb|EGW04719.1| ELAV-like protein 2 [Cricetulus griseus]
Length = 347
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 266 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 325
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 326 NGYRLGDRVLQVSFKTN 342
>gi|332219807|ref|XP_003259049.1| PREDICTED: ELAV-like protein 4 isoform 4 [Nomascus leucogenys]
gi|332808951|ref|XP_001135610.2| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 10 [Pan troglodytes]
gi|397518906|ref|XP_003829616.1| PREDICTED: ELAV-like protein 4 isoform 3 [Pan paniscus]
gi|402854509|ref|XP_003891910.1| PREDICTED: ELAV-like protein 4 isoform 4 [Papio anubis]
gi|426329579|ref|XP_004025816.1| PREDICTED: ELAV-like protein 4 isoform 4 [Gorilla gorilla gorilla]
gi|119627246|gb|EAX06841.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_a [Homo sapiens]
Length = 402
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 111 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 170
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 171 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 230
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 231 GQKPSGATEPITVKFANNPSQK 252
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 289 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 348
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 349 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 401
>gi|117557982|gb|AAI27339.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus (Silurana) tropicalis]
Length = 346
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 67 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 126
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 127 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 186
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 187 GQKPPGATEPITVKFANNPSQK 208
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 325 NGYRLGDRVLQVSF 338
>gi|221316765|ref|NP_068771.2| ELAV-like protein 4 isoform 1 [Homo sapiens]
gi|114556466|ref|XP_001134946.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 2 [Pan troglodytes]
gi|332219811|ref|XP_003259051.1| PREDICTED: ELAV-like protein 4 isoform 6 [Nomascus leucogenys]
gi|395855045|ref|XP_003799982.1| PREDICTED: ELAV-like protein 4 isoform 5 [Otolemur garnettii]
gi|397518912|ref|XP_003829619.1| PREDICTED: ELAV-like protein 4 isoform 6 [Pan paniscus]
gi|402854513|ref|XP_003891912.1| PREDICTED: ELAV-like protein 4 isoform 6 [Papio anubis]
gi|426329583|ref|XP_004025818.1| PREDICTED: ELAV-like protein 4 isoform 6 [Gorilla gorilla gorilla]
gi|223590202|sp|P26378.2|ELAV4_HUMAN RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|380810344|gb|AFE77047.1| ELAV-like protein 4 isoform 1 [Macaca mulatta]
Length = 380
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>gi|115511032|ref|NP_004423.2| ELAV-like protein 2 isoform a [Homo sapiens]
gi|197097794|ref|NP_001127414.1| ELAV-like protein 2 [Pongo abelii]
gi|149736900|ref|XP_001498035.1| PREDICTED: ELAV-like protein 2 isoform 1 [Equus caballus]
gi|291383145|ref|XP_002708096.1| PREDICTED: ELAV-like 2-like isoform 1 [Oryctolagus cuniculus]
gi|296190038|ref|XP_002743026.1| PREDICTED: ELAV-like protein 2 isoform 2 [Callithrix jacchus]
gi|311245695|ref|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Sus scrofa]
gi|332229737|ref|XP_003264044.1| PREDICTED: ELAV-like protein 2 isoform 2 [Nomascus leucogenys]
gi|332831660|ref|XP_520515.3| PREDICTED: ELAV-like protein 2 isoform 3 [Pan troglodytes]
gi|345777488|ref|XP_865062.2| PREDICTED: ELAV-like protein 2 isoform 3 [Canis lupus familiaris]
gi|402897261|ref|XP_003911687.1| PREDICTED: ELAV-like protein 2 isoform 1 [Papio anubis]
gi|403272638|ref|XP_003928159.1| PREDICTED: ELAV-like protein 2 isoform 1 [Saimiri boliviensis
boliviensis]
gi|426220513|ref|XP_004004459.1| PREDICTED: ELAV-like protein 2 isoform 1 [Ovis aries]
gi|426361461|ref|XP_004047929.1| PREDICTED: ELAV-like protein 2 isoform 1 [Gorilla gorilla gorilla]
gi|75070704|sp|Q5R9Z6.1|ELAV2_PONAB RecName: Full=ELAV-like protein 2
gi|93141258|sp|Q12926.2|ELAV2_HUMAN RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Hel-N1
gi|55729364|emb|CAH91414.1| hypothetical protein [Pongo abelii]
gi|119578989|gb|EAW58585.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_d [Homo sapiens]
gi|261860488|dbj|BAI46766.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 2
[synthetic construct]
gi|380784355|gb|AFE64053.1| ELAV-like protein 2 isoform a [Macaca mulatta]
Length = 359
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPGHPGTG--WCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
+VK+ KG GFV N +A +A+ L G +G + +++S+ N
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 354
>gi|46592826|ref|NP_997569.1| ELAV-like protein 2 isoform 3 [Mus musculus]
gi|49114392|gb|AAH46598.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 347
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 266 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 325
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 326 NGYRLGDRVLQVSFKTN 342
>gi|47225636|emb|CAG07979.1| unnamed protein product [Tetraodon nigroviridis]
Length = 382
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 74 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 133
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 134 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRVEAEEAIKGLN 193
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 194 GQKPSGAAEPITVKFANNPSQK 215
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 361 NGYRLGDRVLQVSFKTNKTHK 381
>gi|338721769|ref|XP_003364429.1| PREDICTED: ELAV-like protein 4 [Equus caballus]
Length = 371
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 258 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 317
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 318 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 370
>gi|297664981|ref|XP_002810891.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pongo abelii]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>gi|349732184|ref|NP_001025498.3| ELAV-like protein 2 [Xenopus (Silurana) tropicalis]
gi|288561906|sp|Q28GD4.2|ELAV2_XENTR RecName: Full=ELAV-like protein 2; AltName: Full=Protein ElrB
Length = 375
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 96 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 155
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 215
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 216 GQKPPGATEPITVKFANNPSQK 237
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 294 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 353
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 354 NGYRLGDRVLQVSF 367
>gi|281347138|gb|EFB22722.1| hypothetical protein PANDA_010481 [Ailuropoda melanoleuca]
Length = 377
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 72 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 131
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 132 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 191
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 192 GQKPSGATEPITVKFANNPSQK 213
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 296 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 355
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 356 NGYRLGDRVLQVSFKTNKAHK 376
>gi|149693651|ref|XP_001492503.1| PREDICTED: ELAV-like protein 4 isoform 1 [Equus caballus]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>gi|126334002|ref|XP_001364932.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Monodelphis
domestica]
Length = 347
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 266 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 325
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 326 NGYRLGDRVLQVSFKTNKTHK 346
>gi|62088168|dbj|BAD92531.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) variant [Homo sapiens]
Length = 367
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 76 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 135
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 136 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 195
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 196 GQKPPGATEPITVKFANNPSQK 217
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 254 AYGVKRFSPMTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVT 311
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+VK+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 312 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 366
>gi|84662766|ref|NP_034618.2| ELAV-like protein 4 isoform a [Mus musculus]
gi|354468156|ref|XP_003496533.1| PREDICTED: ELAV-like protein 4 isoform 3 [Cricetulus griseus]
gi|2500580|sp|Q61701.1|ELAV4_MOUSE RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|603495|dbj|BAA06723.1| HuD [Mus musculus]
gi|440906869|gb|ELR57085.1| ELAV-like protein 4 [Bos grunniens mutus]
Length = 385
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
>gi|295424162|ref|NP_001171354.1| ELAV-like protein 2 isoform 4 [Mus musculus]
gi|74206254|dbj|BAE24886.1| unnamed protein product [Mus musculus]
gi|149044490|gb|EDL97749.1| rCG53485, isoform CRA_a [Rattus norvegicus]
Length = 359
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPGHPGTG--WCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
+VK+ KG GFV N +A +A+ L G +G + +++S+ N
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 354
>gi|410978372|ref|XP_003995567.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Felis catus]
Length = 360
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 339 NGYRLGDRVLQVSFKTN 355
>gi|390465918|ref|XP_003733489.1| PREDICTED: ELAV-like protein 4 isoform 2 [Callithrix jacchus]
gi|403258117|ref|XP_003921625.1| PREDICTED: ELAV-like protein 4 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 371
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 258 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 317
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 318 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 370
>gi|327263683|ref|XP_003216647.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Anolis carolinensis]
Length = 397
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 106 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 165
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 166 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 225
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 226 GQKPPGATEPITVKFANNPSQK 247
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 316 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 375
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 376 NGYRLGDRVLQVSFKTNKTHK 396
>gi|297664979|ref|XP_002810890.1| PREDICTED: ELAV-like protein 4 isoform 3 [Pongo abelii]
Length = 371
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 258 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 317
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 318 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 370
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|149693657|ref|XP_001492578.1| PREDICTED: ELAV-like protein 4 isoform 4 [Equus caballus]
Length = 380
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>gi|126334000|ref|XP_001364864.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Monodelphis
domestica]
Length = 360
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
>gi|114556468|ref|XP_001135779.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 12 [Pan troglodytes]
gi|332219801|ref|XP_003259046.1| PREDICTED: ELAV-like protein 4 isoform 1 [Nomascus leucogenys]
gi|395855041|ref|XP_003799980.1| PREDICTED: ELAV-like protein 4 isoform 3 [Otolemur garnettii]
gi|397518902|ref|XP_003829614.1| PREDICTED: ELAV-like protein 4 isoform 1 [Pan paniscus]
gi|402854503|ref|XP_003891907.1| PREDICTED: ELAV-like protein 4 isoform 1 [Papio anubis]
gi|426329573|ref|XP_004025813.1| PREDICTED: ELAV-like protein 4 isoform 1 [Gorilla gorilla gorilla]
gi|221042444|dbj|BAH12899.1| unnamed protein product [Homo sapiens]
gi|261860582|dbj|BAI46813.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 4
[synthetic construct]
Length = 371
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 258 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 317
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 318 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 370
>gi|28879001|gb|AAH48159.1| Elavl4 protein [Mus musculus]
Length = 412
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S
Sbjct: 364 NGYRLGDRVLQVSM 377
>gi|6754264|ref|NP_034616.1| ELAV-like protein 2 isoform 2 [Mus musculus]
gi|13124206|sp|Q60899.1|ELAV2_MOUSE RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Mel-N1
gi|1144004|gb|AAC52644.1| nervous system-specific RNA binding protein Mel-N1 [Mus musculus]
gi|15020258|gb|AAK74154.1| ELAV-like neuronal protein-1 [Mus musculus]
gi|148699000|gb|EDL30947.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 360
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 339 NGYRLGDRVLQVSFKTN 355
>gi|344241813|gb|EGV97916.1| ELAV-like protein 4 [Cricetulus griseus]
gi|431896875|gb|ELK06139.1| ELAV-like protein 4, partial [Pteropus alecto]
Length = 350
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 72 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 131
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 132 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 191
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 192 GQKPSGATEPITVKFANNPSQK 213
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 269 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 328
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 329 NGYRLGDRVLQVSFKTNKAHK 349
>gi|365812510|ref|NP_001002172.2| ELAV-like protein 2 [Danio rerio]
Length = 389
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + + + +A+ +NG S +A +
Sbjct: 97 CKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 156
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS FG I++ +I V +G GF++F R +AE A++ L
Sbjct: 157 YVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLN 216
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 217 GQKPPGATEPITVKFANNPSQK 238
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A VA+ L
Sbjct: 308 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 367
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 368 NGYRLGDRVLQVSFKTNKTHK 388
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+T L++ FS+ +++ +D TG ++G GF+RF E A+ +NG
Sbjct: 165 MTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGAT 224
Query: 63 ATIFVGALDSNVSDKDLRELFSHF 86
I V +N S K + L SH
Sbjct: 225 EPITV-KFANNPSQKSSQALLSHL 247
>gi|354491611|ref|XP_003507948.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cricetulus griseus]
Length = 359
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+VK+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
>gi|348587076|ref|XP_003479294.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cavia porcellus]
Length = 360
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
>gi|119578988|gb|EAW58584.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_c [Homo sapiens]
Length = 360
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 82 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 141
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 142 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 201
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 202 GQKPPGATEPITVKFANNPSQK 223
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
>gi|125991914|ref|NP_001075075.1| ELAV-like protein 4 [Bos taurus]
gi|73976985|ref|XP_859918.1| PREDICTED: ELAV-like protein 4 isoform 5 [Canis lupus familiaris]
gi|291398926|ref|XP_002715151.1| PREDICTED: ELAV-like 4-like isoform 2 [Oryctolagus cuniculus]
gi|301772324|ref|XP_002921582.1| PREDICTED: ELAV-like protein 4-like [Ailuropoda melanoleuca]
gi|426215482|ref|XP_004002001.1| PREDICTED: ELAV-like protein 4 isoform 1 [Ovis aries]
gi|124829171|gb|AAI33284.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Bos taurus]
gi|296489084|tpg|DAA31197.1| TPA: ELAV-like 4 [Bos taurus]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>gi|81914424|sp|Q8CH84.1|ELAV2_RAT RecName: Full=ELAV-like protein 2; AltName: Full=Hu-antigen B;
Short=HuB
gi|27374986|dbj|BAC53775.1| RNA binding protein HuB [Rattus norvegicus]
Length = 359
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPGHPGTG--WCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
+VK+ KG GFV N +A +A+ L G +G + +++S+ N
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 354
>gi|354491613|ref|XP_003507949.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cricetulus griseus]
Length = 360
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
>gi|348587078|ref|XP_003479295.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cavia porcellus]
Length = 347
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 266 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 325
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 326 NGYRLGDRVLQVSFKTN 342
>gi|224058156|ref|XP_002196701.1| PREDICTED: ELAV-like protein 4 [Taeniopygia guttata]
Length = 371
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 258 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 317
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 318 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 370
>gi|213625406|gb|AAI70539.1| Xel-1 protein [Xenopus laevis]
Length = 388
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 95 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 154
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 155 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 214
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 215 GQKPPGATEPITVKFANNPSQK 236
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 367 NGYRLGDRVLQVSF 380
>gi|283945529|ref|NP_001164666.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|283945537|ref|NP_001164668.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|386781798|ref|NP_001247929.1| ELAV-like protein 2 [Macaca mulatta]
gi|73971067|ref|XP_865045.1| PREDICTED: ELAV-like protein 2 isoform 2 [Canis lupus familiaris]
gi|296190040|ref|XP_002743027.1| PREDICTED: ELAV-like protein 2 isoform 3 [Callithrix jacchus]
gi|296190042|ref|XP_002743028.1| PREDICTED: ELAV-like protein 2 isoform 4 [Callithrix jacchus]
gi|311245697|ref|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Sus scrofa]
gi|332229735|ref|XP_003264043.1| PREDICTED: ELAV-like protein 2 isoform 1 [Nomascus leucogenys]
gi|332229739|ref|XP_003264045.1| PREDICTED: ELAV-like protein 2 isoform 3 [Nomascus leucogenys]
gi|332831658|ref|XP_003312071.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan troglodytes]
gi|332831662|ref|XP_003312072.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan troglodytes]
gi|338719470|ref|XP_003364010.1| PREDICTED: ELAV-like protein 2 isoform 2 [Equus caballus]
gi|344271095|ref|XP_003407377.1| PREDICTED: ELAV-like protein 2-like [Loxodonta africana]
gi|402897263|ref|XP_003911688.1| PREDICTED: ELAV-like protein 2 isoform 2 [Papio anubis]
gi|402897265|ref|XP_003911689.1| PREDICTED: ELAV-like protein 2 isoform 3 [Papio anubis]
gi|402897267|ref|XP_003911690.1| PREDICTED: ELAV-like protein 2 isoform 4 [Papio anubis]
gi|403272640|ref|XP_003928160.1| PREDICTED: ELAV-like protein 2 isoform 2 [Saimiri boliviensis
boliviensis]
gi|403272642|ref|XP_003928161.1| PREDICTED: ELAV-like protein 2 isoform 3 [Saimiri boliviensis
boliviensis]
gi|410042502|ref|XP_003951453.1| PREDICTED: ELAV-like protein 2 [Pan troglodytes]
gi|410978370|ref|XP_003995566.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Felis catus]
gi|426220515|ref|XP_004004460.1| PREDICTED: ELAV-like protein 2 isoform 2 [Ovis aries]
gi|426220517|ref|XP_004004461.1| PREDICTED: ELAV-like protein 2 isoform 3 [Ovis aries]
gi|426361463|ref|XP_004047930.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gorilla gorilla gorilla]
gi|426361465|ref|XP_004047931.1| PREDICTED: ELAV-like protein 2 isoform 3 [Gorilla gorilla gorilla]
gi|426361467|ref|XP_004047932.1| PREDICTED: ELAV-like protein 2 isoform 4 [Gorilla gorilla gorilla]
gi|441622584|ref|XP_004088846.1| PREDICTED: ELAV-like protein 2 [Nomascus leucogenys]
gi|21265137|gb|AAH30692.1| ELAVL2 protein [Homo sapiens]
gi|119578985|gb|EAW58581.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|119578986|gb|EAW58582.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|123981428|gb|ABM82543.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|123996267|gb|ABM85735.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|157928304|gb|ABW03448.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|384945702|gb|AFI36456.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|384945704|gb|AFI36457.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|387541444|gb|AFJ71349.1| ELAV-like protein 2 isoform b [Macaca mulatta]
Length = 346
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 325 NGYRLGDRVLQVSFKTN 341
>gi|71051886|gb|AAH99348.1| ElrD protein, partial [Xenopus laevis]
Length = 360
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 69 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 128
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 129 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 188
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 189 GQKPSGAAEPITVKFANNPSQK 210
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 279 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
>gi|413921125|gb|AFW61057.1| hypothetical protein ZEAMMB73_234884 [Zea mays]
Length = 322
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 7/56 (12%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+D+T+ +LQETF AKV D T TKGYGFV+FGD NE++RAM EMNG
Sbjct: 220 ADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNEQARAMTEMNG 275
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 26/140 (18%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGK----SNN 62
K+ D +TG +GYGF+ F R + NG S G+ + +
Sbjct: 151 KLIRDKHTGQLQGYGFIEFISRAAAERVLQTYNGTMMPNVELPFRLNWASAGEKRDDTPD 210
Query: 63 ATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 115
TIFVG L ++V+D L+E F +H+ + K+ KG GFV+F + + A+
Sbjct: 211 YTIFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNEQARAM 270
Query: 116 QKLQGTAIGKQTVRLSWGHN 135
++ G + +R+ N
Sbjct: 271 TEMNGMLCSSRPMRIGPAAN 290
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDA 111
G S T+++G L + D + F+ GE+ +VK+ K G GF++F +R A
Sbjct: 116 GPSEVRTLWIGDLQYWMDDNYIYGCFASTGEVQNVKLIRDKHTGQLQGYGFIEFISRAAA 175
Query: 112 EVALQKLQGTAIG--KQTVRLSWG 133
E LQ GT + + RL+W
Sbjct: 176 ERVLQTYNGTMMPNVELPFRLNWA 199
>gi|393246659|gb|EJD54168.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 531
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 35/147 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNN---------------- 62
A+V +D TG +KG+G+V F D +A+ MNG DG+ N
Sbjct: 301 ARVQMDRQTGKSKGFGYVEFADAASAKKAVETMNGREIDGRPVNLDLATPRGPPNPERRA 360
Query: 63 -----------ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQF 105
AT+FVG L + + + ELF GE+++V++P KG G+V+F
Sbjct: 361 KAFGDSRSEPSATLFVGNLAFSATQDAVYELFGAVGEVVNVRLPTDRDSGQPKGFGYVEF 420
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLSW 132
A+ + A AL +L GT + +RL +
Sbjct: 421 ADVETASKALNELGGTDFEGRNIRLDF 447
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 51 IEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQ 104
++ +G++G +IFVG L NV D+ L+ F+ GE++S ++ + KG G+V+
Sbjct: 260 VKTDGAEGGEEVKSIFVGRLSWNVDDEWLKTEFAEAGEVVSARVQMDRQTGKSKGFGYVE 319
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRL 130
FA+ A+ A++ + G I + V L
Sbjct: 320 FADAASAKKAVETMNGREIDGRPVNL 345
>gi|358383610|gb|EHK21274.1| hypothetical protein TRIVIDRAFT_116557, partial [Trichoderma virens
Gv29-8]
Length = 466
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N KGY GFV + D RAM +NG
Sbjct: 88 VTEDVLRQIFETTGHVQNVKIIPDKNA---KGYNYGFVEYDDPGAAERAMQTLNGRRVHQ 144
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D L + FS FG + ++
Sbjct: 145 SEIRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVNDDILLQAFSAFGSVSEARVMWDMKT 204
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 205 GRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKGQP 249
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + +VKI K GFV++ + AE
Sbjct: 73 EPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAER 132
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + N + D NH+
Sbjct: 133 AMQTLNGRRVHQSEIRVNWAYQ-SNTTSKEDTSNHF 167
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 38/72 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + D+ LF +FG ++ + +G F++ ++A +A+ ++ G +
Sbjct: 294 TCYVGNLTPYTTPNDVVPLFQNFGFVVESRFQADRGFAFIKMDTHENAAMAICQMNGYNV 353
Query: 124 GKQTVRLSWGHN 135
+ ++ SWG +
Sbjct: 354 NGRPLKCSWGKD 365
>gi|334321532|ref|XP_003340124.1| PREDICTED: ELAV-like protein 4 isoform 2 [Monodelphis domestica]
Length = 347
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPSGATEPITVKFANNPSQK 209
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 266 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 325
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 326 NGYRLGDRVLQVSFKTNKTHK 346
>gi|334321530|ref|XP_001373647.2| PREDICTED: ELAV-like protein 4 isoform 1 [Monodelphis domestica]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 253 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 312
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 313 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 365
>gi|41581275|emb|CAE47924.1| oligouridylate binding protein, putative [Aspergillus fumigatus]
Length = 485
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 35/165 (21%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N ++KGY GFV F D RAM +NG
Sbjct: 102 VTEDILKQIFETTGHVQSVKIIPDKNF-NSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQ 160
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ S++ IFVG L + V+D+ L + FS FG + ++
Sbjct: 161 SEIRVNWAYQSNSANKEDTSSHFHIFVGDLSNEVNDEILLQAFSAFGSVSEARVMWDMKT 220
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 221 GRSRGYGFVAFRERADAEKALNAMDGEWLGSRAIRCNWANQKGQP 265
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-------PVGKGCGFVQFANRKDA 111
+ N ++VG LD V++ L+++F G + SVKI G GFV+F + A
Sbjct: 87 EPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFNSKGYNYGFVEFDDPGAA 146
Query: 112 EVALQKLQGTAIGKQTVRLSWGH--NPGNKQWRGDHI 146
E A+Q L G I + +R++W + N NK+ H
Sbjct: 147 ERAMQTLNGRRIHQSEIRVNWAYQSNSANKEDTSSHF 183
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG +L ++ +G F++ ++A +A+ +L G +
Sbjct: 310 TCYVGNLTPYTTQNDLVPLFHNFGYVLETRLQADRGFAFIKMDTHENAAMAICQLNGYNV 369
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 370 NGRPLKCSWG 379
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N +L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKVLYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 47/184 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
++ + L+E FS+ KV D N G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Query: 58 -----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
+ +++ LD + D+ LR+ FS FG
Sbjct: 260 IIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 320 ITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKA 376
Query: 145 HINH 148
H+ +
Sbjct: 377 HLTN 380
Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|345780791|ref|XP_859879.2| PREDICTED: ELAV-like protein 4 isoform 4 [Canis lupus familiaris]
Length = 364
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 73 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 132
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 133 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 192
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 193 GQKPSGATEPITVKFANNPSQK 214
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 283 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 342
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 343 NGYRLGDRVLQVSFKTNKAHK 363
>gi|119627249|gb|EAX06844.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_d [Homo sapiens]
Length = 365
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 74 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 133
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 134 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 193
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 194 GQKPSGATEPITVKFANNPSQK 215
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 284 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 343
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 344 NGYRLGDRVLQVSFKTNKAHK 364
>gi|348554579|ref|XP_003463103.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cavia porcellus]
Length = 347
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPSGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 266 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 325
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 326 NGYRLGDRVLQVSFKTNKAHK 346
>gi|346972032|gb|EGY15484.1| nucleolysin TIA-1 [Verticillium dahliae VdLs.17]
Length = 489
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 28/144 (19%)
Query: 20 RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------SDGK 59
RA TI G+ YGFV + D RAM +NG +
Sbjct: 125 RAADTIFQQKGYN--YGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTTSKEDT 182
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKIPVGKGCGFVQFANRKDAEV 113
SN+ IFVG L + V+D+ L + F+ FG + +K +G GFV F +R DAE
Sbjct: 183 SNHFHIFVGDLSNEVNDEILSQAFAAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEK 242
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPG 137
AL + G +G + +R +W + G
Sbjct: 243 ALSSMDGEWLGSRAIRCNWANQKG 266
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 39/72 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T++VG L + D+ LF +FG ++ + +G F++ + + A +A+ ++ G +
Sbjct: 313 TVYVGNLTPYTTPNDVVPLFQNFGFVVESRFQADRGFAFIKMESHEAAAMAICQMNGYNV 372
Query: 124 GKQTVRLSWGHN 135
+ ++ SWG +
Sbjct: 373 NGRPLKCSWGKD 384
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
+++ + IL + F S A+V D TG ++GYGFV F D + +A+ M+G
Sbjct: 195 NEVNDEILSQAFAAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDG 249
>gi|119495558|ref|XP_001264561.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Neosartorya fischeri NRRL 181]
gi|119412723|gb|EAW22664.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Neosartorya fischeri NRRL 181]
Length = 477
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 35/165 (21%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N ++KGY GFV F D RAM +NG
Sbjct: 102 VTEDILKQIFETTGHVQSVKIIPDKNF-NSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQ 160
Query: 56 ------------SDGKSNNAT---IFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
S K + ++ IFVG L + V+D+ L + FS FG + ++
Sbjct: 161 SEIRVNWAYQSNSTNKEDTSSHFHIFVGDLSNEVNDEILLQAFSAFGSVSEARVMWDMKT 220
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 221 GRSRGYGFVAFRERADAEKALNAMDGEWLGSRAIRCNWANQKGQP 265
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-------PVGKGCGFVQFANRKDA 111
+ N ++VG LD V++ L+++F G + SVKI G GFV+F + A
Sbjct: 87 EPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFNSKGYNYGFVEFDDPGAA 146
Query: 112 EVALQKLQGTAIGKQTVRLSWGH 134
E A+Q L G I + +R++W +
Sbjct: 147 ERAMQTLNGRRIHQSEIRVNWAY 169
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG +L ++ +G F++ ++A +A+ +L G +
Sbjct: 310 TCYVGNLTPYTTQNDLVPLFHNFGYVLETRLQADRGFAFIKMDTHENAAMAICQLNGYNV 369
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 370 NGRPLKCSWG 379
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ TG +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.4 bits (98), Expect = 0.073, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS----------------NV------SDKDLRELFSHFGEILSVKIPV---- 96
+FVG S NV D D L FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESG 225
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 257
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 41/173 (23%)
Query: 8 DITNSILQETFSRA---KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GKS-- 60
D+ + L++ F A KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 259
Query: 61 -----------------------------NNATIFVGALDSNVSDKDLRELFSHFGEILS 91
++V LD + D+ LR+ FS FG I S
Sbjct: 260 VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 319
Query: 92 VKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 AKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 372
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS----------------NV------SDKDLRELFSHFGEILSVKIPV---- 96
+FVG S NV D D L FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESG 225
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 257
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 41/173 (23%)
Query: 8 DITNSILQETFSRA---KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GKS-- 60
D+ + L++ F A KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 259
Query: 61 -----------------------------NNATIFVGALDSNVSDKDLRELFSHFGEILS 91
++V LD + D+ LR+ FS FG I S
Sbjct: 260 VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 319
Query: 92 VKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 AKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 372
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|367026720|ref|XP_003662644.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
gi|347009913|gb|AEO57399.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
Length = 500
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 37/165 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N KGY GFV + D RAM +NG
Sbjct: 101 VTEDVLRQIFETTGHVQSVKIIPDKNA---KGYNYGFVEYDDPGAAERAMQTLNGRRVHQ 157
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG I ++
Sbjct: 158 SEIRVNWAYQSNNSNKEDTSNHFHIFVGDLSNEVNDEVLFQAFSAFGSISEARVMWDMKT 217
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 218 GRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNWANQKGQP 262
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + SVKI K GFV++ + AE
Sbjct: 86 EPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNAKGYNYGFVEYDDPGAAER 145
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + N + D NH+
Sbjct: 146 AMQTLNGRRVHQSEIRVNWAYQSNNSN-KEDTSNHF 180
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + D+ LF +FG ++ + +G F++ ++A +A+ +L G +
Sbjct: 307 TCYVGNLTPYTTQTDIVPLFQNFGFVVESRFQADRGFAFIKMDTHENAAMAICQLNGYNV 366
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 367 NGRPLKCSWG 376
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNASAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGKFGAALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD ++D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGINDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS----------------NV------SDKDLRELFSHFGEILSVKIPV---- 96
+FVG S NV D D L FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESG 225
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 257
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 41/173 (23%)
Query: 8 DITNSILQETFSRA---KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GKS-- 60
D+ + L++ F A KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 259
Query: 61 -----------------------------NNATIFVGALDSNVSDKDLRELFSHFGEILS 91
++V LD + D+ LR+ FS FG I S
Sbjct: 260 VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 319
Query: 92 VKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 AKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 372
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|117647212|ref|NP_001071119.1| ELAV-like protein 4 [Rattus norvegicus]
gi|2500581|sp|O09032.1|ELAV4_RAT RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|1911579|gb|AAB50733.1| HuD [Rattus sp.]
gi|165970854|gb|AAI58559.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Rattus norvegicus]
Length = 373
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPSGATEPITVKFANNPSQK 209
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L++LFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G IG + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L++ FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|348504313|ref|XP_003439706.1| PREDICTED: ELAV-like protein 4-like [Oreochromis niloticus]
Length = 476
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 185 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 244
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 245 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLN 304
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 305 GQKPSGAAEPITVKFANNPSQK 326
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 363 AYGVKRFSPITIDSMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 422
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 423 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 475
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGR 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + AE A++K+ G + + V
Sbjct: 141 GFVHFETHEAAERAIEKMNGMLLNDRKV 168
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 40/168 (23%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+E+F +G LS+++
Sbjct: 166 RKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
KG GFV F +DA+ A+ ++ G + + V + G +Q
Sbjct: 226 DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQ 273
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + +V D ++G +KG+GFV F + RA+ EMNG + GK
Sbjct: 201 DMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
>gi|410967448|ref|XP_003990231.1| PREDICTED: ELAV-like protein 4 [Felis catus]
Length = 494
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 92 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 151
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 152 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 211
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 212 GQKPSGATEPITVKFANNPSQK 233
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 270 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 329
Query: 93 KIP------VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
K+ KG GFV N +A +A+ L G +G + +++S+ N
Sbjct: 330 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 378
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 40/168 (23%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELFS +G LS+++
Sbjct: 166 RKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
KG GFV F +DA+ A+ ++ G + + V + G +Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRAQKKGERQ 273
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGR 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + AE A++K+ G + + V
Sbjct: 141 GFVHFETHEAAERAIEKMNGMLLNDRKV 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + L+E FS+ +V D +G +KG+GFV F + +A+ EMNG +
Sbjct: 201 DMDDEKLKELFSKYGPALSIRVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGR 259
Query: 58 ----------GKSNN-------------------ATIFVGALDSNVSDKDLRELFSHFGE 88
G+ N ++V LD + D+ LR+ FS FG
Sbjct: 260 QVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGRPLRIMWSQ 88
>gi|410907065|ref|XP_003967012.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 2-like, partial
[Takifugu rubripes]
Length = 321
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 29 CKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 88
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL- 118
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 89 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLN 148
Query: 119 -QGTAIGKQTVRLSWGHNPGNK 139
Q + + + + +NP K
Sbjct: 149 CQKPPGATEPITVKFANNPSQK 170
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A VA+ L
Sbjct: 240 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 299
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 300 NGYRLGDRVLQVSFKTNKTHK 320
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 30/155 (19%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
++T+S L + F++ +V D +T + GYG+V + + + +RA+ +N
Sbjct: 22 NVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNK 81
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S KS A IF+ LD + K L + FS FG ILS K+ KG
Sbjct: 82 PIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGNILSCKVATDASGQSKG 141
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
GFVQF + + A+ A+ KL G + + V + GH
Sbjct: 142 YGFVQFDSEEAAQNAIDKLNGMLVNDKQVYV--GH 174
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 38/138 (27%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DG-------------------- 58
+ V + G +K +GFV F ++ ++A+ +NG DG
Sbjct: 219 SAVVMRDADGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKG 278
Query: 59 -----------KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGF 102
K +++ LD +++D+ L+ELFS FG I S K+ P G +G GF
Sbjct: 279 RFEQSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGF 338
Query: 103 VQFANRKDAEVALQKLQG 120
V F+ ++A AL ++ G
Sbjct: 339 VAFSTPEEASRALAEMNG 356
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG LD NV+D L ++F+ G+++SV++ G G+V ++N +DA AL
Sbjct: 13 SLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDV 72
Query: 118 LQGTAIGKQTVRLSWGH 134
L T + + +R+ + H
Sbjct: 73 LNFTPLNNKPIRIMYSH 89
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 24/146 (16%)
Query: 5 QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN---------- 54
Q+ D+ N + Q R V D + + GYG+V F + + +RA+ +N
Sbjct: 46 QLYDLFNQLGQVVSVR--VCRDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIR 103
Query: 55 -------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGF 102
S KS IF+ LD + K L + FS FG ILS K+ KG GF
Sbjct: 104 IMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGF 163
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTV 128
VQF N + A+ A++KL G + + V
Sbjct: 164 VQFDNEESAQKAIEKLNGMLLNDKQV 189
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV DS +G +KGYGFV+F +E +A+ ++NG
Sbjct: 130 IDHKALHDTFSTFGNILSCKVATDS-SGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 188
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS-VKIPVGKG- 99
+ K+ +FV L + +D +L+ F FG I S V + G G
Sbjct: 189 VYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGK 248
Query: 100 --C-GFVQFANRKDAEVALQKLQG 120
C GFV F N DA A++ L G
Sbjct: 249 SKCFGFVNFENADDAARAVEALNG 272
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 43/176 (24%)
Query: 10 TNSILQETFSR-----AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD------- 57
T+ L+ TF + V + G +K +GFV F + ++ +RA+ +NG +
Sbjct: 222 TDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWY 281
Query: 58 --------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
K A ++V LD ++ D+ L+ELFS FG I S
Sbjct: 282 VGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITS 341
Query: 92 VKI---PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
K+ P G +G GFV F+ ++A AL ++ G + + + ++ +++ R
Sbjct: 342 CKVMRDPNGLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRAR 397
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG LD NV+D L +LF+ G+++SV++ G G+V F+N +DA AL
Sbjct: 32 SLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDV 91
Query: 118 LQGTAIGKQTVRLSWGH 134
L T + + +R+ + H
Sbjct: 92 LNFTPLNNRPIRIMYSH 108
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FSRA +V D T + Y +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S +S IFV LD ++++K L + S FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + AE A++K+ GT + + V
Sbjct: 141 GFVHFETHEAAERAIEKMNGTLLNDRKV 168
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 68/155 (43%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N +L +T S KV D N +KGYGFV F RA+ +MNG+ N+
Sbjct: 110 INNKVLYDTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGT--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQ 260
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG +
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKELNGK 259
Query: 58 ----GKSNN-------------------------ATIFVGALDSNVSDKDLRELFSHFGE 88
G++ ++V LD ++ D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+ KDAE AL + I + VR+ W
Sbjct: 61 HPKDAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|301763026|ref|XP_002916933.1| PREDICTED: ELAV-like protein 2-like [Ailuropoda melanoleuca]
Length = 427
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 136 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 195
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 196 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 255
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 256 GQKPPGATEPITVKFANNPSQK 277
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 314 AYGVKRFSPMTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVT 371
Query: 91 SVKIP------VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+VK+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 372 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 426
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FSRA +V D T + Y +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S +S IFV LD ++++K L + S FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + AE A++K+ GT + + V
Sbjct: 141 GFVHFETHEAAERAIEKMNGTLLNDRKV 168
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N +L +T S KV D N +KGYGFV F RA+ +MNG+ N+
Sbjct: 110 INNKVLYDTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGT--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV F +DA+ A+ ++ G + + +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHI 261
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG +
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 58 ----GKSNN-------------------------ATIFVGALDSNVSDKDLRELFSHFGE 88
G++ ++V LD ++ D+ LR+ FS FG
Sbjct: 260 HIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+ KDAE AL + I + VR+ W
Sbjct: 61 HPKDAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|344278909|ref|XP_003411234.1| PREDICTED: ELAV-like protein 4-like [Loxodonta africana]
Length = 419
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 128 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 187
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 188 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 247
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 248 GQKPSGATEPITVKFANNPSQK 269
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 306 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 365
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 366 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 418
>gi|332029758|gb|EGI69627.1| ELAV-like protein 2 [Acromyrmex echinatior]
Length = 359
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 23/140 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D +G + GYGFV + + +A+ +NG S A ++
Sbjct: 58 KLIRDKLSGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLY 117
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L N++ +DL LFS +G I++ +I + KG GF++F R +AE A+Q+L G
Sbjct: 118 VSGLPKNMAQQDLENLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRVEAERAIQELNG 177
Query: 121 TAI--GKQTVRLSWGHNPGN 138
T + + + + +NP N
Sbjct: 178 TIPKGSSEPITVKFANNPSN 197
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQKL 118
+ V L +++ ++R LFS GE+ S K+ K G GFV + +DAE A+ L
Sbjct: 30 LIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRPEDAEKAINTL 89
Query: 119 QGTAIGKQTVRLSWGHNPGNKQWRGDHI 146
G + +T+++S+ P ++ +G ++
Sbjct: 90 NGLRLQNKTIKVSYAR-PSSEAIKGANL 116
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + SVK+ KG GFV N ++A VA+Q L
Sbjct: 278 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYEEAVVAIQSL 337
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 338 NGYTLGNRVLQVSFKTN 354
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67
+++ D+ TG +KG GF+RF E RA+ E+NG+ K ++ I V
Sbjct: 143 SRILCDNITGLSKGVGFIRFDQRVEAERAIQELNGTIPKGSSEPITV 189
>gi|297737424|emb|CBI26625.3| unnamed protein product [Vitis vinifera]
Length = 194
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 38/56 (67%), Gaps = 7/56 (12%)
Query: 7 SDITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
SD+T+ +LQETF AKV D TG +KGYGFVRFGDE E+ RAM EMNG
Sbjct: 92 SDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFGDEGEQLRAMNEMNG 147
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS----------------------DG 58
KV + TG +GYGF+ R + NG+
Sbjct: 19 VKVIRNKQTGQCEGYGFIELATRAAAERILQTYNGTLMPNSEQNFRLNWATLGAGERRAD 78
Query: 59 KSNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDA 111
+ + TIFVG L S+V+D L+E F H+ + K+ KG GFV+F + +
Sbjct: 79 DTPDYTIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFGDEGEQ 138
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 139 LRAMNEMNGMFCSTRPMRI 157
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 83 FSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQKLQGTAI--GKQTVRLSW 132
FS GE++SVK+ K G GF++ A R AE LQ GT + +Q RL+W
Sbjct: 10 FSQTGEVVSVKVIRNKQTGQCEGYGFIELATRAAAERILQTYNGTLMPNSEQNFRLNW 67
>gi|432856226|ref|XP_004068415.1| PREDICTED: ELAV-like protein 4-like [Oryzias latipes]
Length = 439
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 148 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 207
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 208 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 267
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 268 QKPSGAAEPITVKFANNPSQK 288
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 358 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 417
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 418 NGYRLGDRVLQVSFKTN 434
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 106 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 161
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 162 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 221
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 222 PTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 257
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ TG +KG+GFV + + ++A+ EMNG +
Sbjct: 197 EVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 256
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 257 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 316
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
++ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 317 TRAEVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 373
Query: 146 INH 148
+ +
Sbjct: 374 LTN 376
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 91 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 150
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 151 IEKMNGMLLNDRKV 164
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 29/157 (18%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS-- 60
+T L++ FS+ K+ D ++G + GYGFV +G E A+ +MNG+ +S
Sbjct: 35 LTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGFVNYGSAEEAEHAIQKMNGTTLESKT 94
Query: 61 -------------NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCG 101
NA ++V L +S +L LF +G I++ K+ G+G G
Sbjct: 95 LKVSYARPSSVAIKNANVYVANLPPQLSLTELDALFQPYGTIITSKVLTDEDTGAGRGVG 154
Query: 102 FVQFANRKDAEVALQKLQGTAI--GKQTVRLSWGHNP 136
FV+F AEVA+ L G + G Q + + + + P
Sbjct: 155 FVRFDKYTQAEVAIAALNGKQLVGGTQPLLVKFANPP 191
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
+ V L ++++ L++LFS FG +LS K+ + G GFV + + ++AE A+QK+
Sbjct: 26 LIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGFVNYGSAEEAEHAIQKM 85
Query: 119 QGTAIGKQTVRLSWGH 134
GT + +T+++S+
Sbjct: 86 NGTTLESKTLKVSYAR 101
>gi|270014670|gb|EFA11118.1| hypothetical protein TcasGA2_TC004718 [Tribolium castaneum]
Length = 350
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 23/133 (17%)
Query: 29 TGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIFVGALDSN 73
TG + GYGFV + + +A+ +NG S A ++V L N
Sbjct: 79 TGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKN 138
Query: 74 VSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQGTAI--GK 125
++ +DL LFS +G I++ +I + KG GF++F R +AE A+Q+L GT
Sbjct: 139 MTQQDLESLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRLEAERAIQELNGTIPKGST 198
Query: 126 QTVRLSWGHNPGN 138
+ + + + +NP N
Sbjct: 199 EPITVKFANNPSN 211
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + SVK+ KG GFV N +A VA+Q L
Sbjct: 269 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 328
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 329 NGYTLGNRVLQVSFKTN 345
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI-------------PV----GKGCGFVQFAN 107
+ V L ++ +++R LFS GE+ S K+ P+ G GFV +
Sbjct: 33 LIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKVTVPGVITSPLLTGQSLGYGFVNYHR 92
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHI 146
+DAE A+ L G + +T+++S+ P ++ +G ++
Sbjct: 93 PEDAEKAINTLNGLRLQNKTIKVSYAR-PSSEAIKGANL 130
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
++T L+ FS +++ D+ TG +KG GF+RF E RA+ E+NG+ K +
Sbjct: 138 NMTQQDLESLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRLEAERAIQELNGTIPKGS 197
Query: 62 NATIFV 67
I V
Sbjct: 198 TEPITV 203
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGK 59
++T+S L + F++ +V D + + GYG+V +G+ + +RA+ +N + GK
Sbjct: 37 NVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVLNFTPLHGK 96
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S N IF+ LD + K L + FS FG ILS K+ V KG
Sbjct: 97 PIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKG 156
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQ+ + + A+ A++KL G + + V
Sbjct: 157 YGFVQYDSDEAAQKAIEKLNGMLLNDKQV 185
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV +DS +G +KGYGFV++ + +A+ ++NG
Sbjct: 126 IDHKALHDTFSAFGNILSCKVAVDS-SGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQ 184
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK 98
+ K+ +FV L + +++LR++F FG I SV + GK
Sbjct: 185 VYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGK 244
Query: 99 G-C-GFVQFANRKDAEVALQKLQG 120
C GFV F N +DA A++ L G
Sbjct: 245 SRCFGFVNFENAEDAARAVEALNG 268
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 49/166 (29%)
Query: 6 VSDITNSILQE----------TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
V +++ S L+E T + V D + G ++ +GFV F + + +RA+ +NG
Sbjct: 210 VKNLSESTLEEELRKIFGEFGTITSVAVMKDED-GKSRCFGFVNFENAEDAARAVEALNG 268
Query: 56 ---------------------------------SDGKSNNATIFVGALDSNVSDKDLREL 82
+ KS +++ LD ++SD L+EL
Sbjct: 269 YKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKEL 328
Query: 83 FSHFGEILSVKI-----PVGKGCGFVQFANRKDAEVALQKLQGTAI 123
FS +G I S K+ V KG GFV F+ ++A AL ++ G +
Sbjct: 329 FSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKMV 374
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 54 NGSDGKSNN--ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQF 105
N + G +N +++VG LD NV+D L +LF+ G+++SV++ G G+V +
Sbjct: 16 NNAGGVNNQFVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNY 75
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
N +DA AL+ L T + + +R+ + +
Sbjct: 76 GNPQDAARALEVLNFTPLHGKPIRIMYSN 104
>gi|195353012|ref|XP_002043004.1| GM16370 [Drosophila sechellia]
gi|194127069|gb|EDW49112.1| GM16370 [Drosophila sechellia]
Length = 504
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 42/174 (24%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
S+I L+E F S +V D T +KGYGFV F ++E A+ MNG
Sbjct: 174 SEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGS 233
Query: 56 ----------------------------SDGKSNNATIFVGALDSNV---SDKDLRELFS 84
+ +N T++VG ++S + S++ L++ F+
Sbjct: 234 RSIRTNWATRKPPANKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFA 293
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
+G I +++ KG FV+F+ ++ A A+ + T I Q V+ SWG G+
Sbjct: 294 PYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKESGD 347
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAE 112
K IFVG L S + + LRE F+ FGEI ++ KG GFV F + +AE
Sbjct: 161 KQEQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAE 220
Query: 113 VALQKLQGTAIGKQTVRLSWGHN--PGNKQ 140
A+ + G +G +++R +W P NK+
Sbjct: 221 SAITAMNGQWLGSRSIRTNWATRKPPANKE 250
>gi|432919034|ref|XP_004079712.1| PREDICTED: ELAV-like protein 2-like [Oryzias latipes]
Length = 389
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 97 CKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 156
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL- 118
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 157 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLN 216
Query: 119 -QGTAIGKQTVRLSWGHNPGNK 139
Q + + + + +NP K
Sbjct: 217 CQKPPGATEPITVKFANNPSQK 238
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A VA+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 367
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 368 NGYRLGDRVLQVSFKTNKTHK 388
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S ++ D+ L+ELFS +G+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV F +DA A++ + G I + V
Sbjct: 226 PSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMV 261
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E FS+ KV D +G +KG+GFV F + ++A+ +MNG D N
Sbjct: 201 DMDDERLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANQAVEDMNGKD--IN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
+FVG LD + D+ LR+ FS F
Sbjct: 258 GKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 318 GSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 374
Query: 143 GDHINH 148
H+ +
Sbjct: 375 KAHLTN 380
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F + A+ A++K+ G + + V
Sbjct: 141 AFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
A+++VG L +V++ L E FS G +LS+++ G +V F DAE AL
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 117 KLQGTAIGKQTVRLSWGH 134
+ I + +R+ W
Sbjct: 71 TMNFDVIKGKPIRIMWSQ 88
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V DS T + GY +V F E R + MN
Sbjct: 22 DVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDTMNFDLLKGK 81
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP-----VGKG 99
S KS +F+ LD ++ +K + + FS FG ILS K+ V KG
Sbjct: 82 PIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAIDDDGVSKG 141
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + + A A++K+ G + + V
Sbjct: 142 YGFVHFESIEAANKAIEKVNGMLLNGKKV 170
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 37/146 (25%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN-------------------- 62
V + + G +KG+GF+ F + +A+ EMN + N
Sbjct: 223 VVMANPDGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNLYVGRAQKKSERIKELKKCY 282
Query: 63 -------------ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQF 105
A +++ LD + LR+ FS FG I S K+ KG GFV F
Sbjct: 283 EQMKLERYNRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITSAKVMTEGGRSKGFGFVCF 342
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLS 131
+ ++A A+ ++ G IG + + ++
Sbjct: 343 STPEEASKAITEMDGRMIGSKPIYVA 368
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 35/144 (24%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKS 60
I N + +TFS KV ID + G +KGYGFV F ++A+ ++NG +GK
Sbjct: 111 IDNKAMYDTFSAFGNILSCKVAIDDD-GVSKGYGFVHFESIEAANKAIEKVNGMLLNGKK 169
Query: 61 ---------------------NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PV 96
++V N++ + L +LF ++G I S + P
Sbjct: 170 VYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPD 229
Query: 97 G--KGCGFVQFANRKDAEVALQKL 118
G KG GF+ F + AE A+ ++
Sbjct: 230 GTSKGFGFIAFEEPESAEKAVTEM 253
>gi|449472546|ref|XP_004153627.1| PREDICTED: polyadenylate-binding protein RBP47C'-like, partial
[Cucumis sativus]
Length = 81
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 33/42 (78%)
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
K+AE A+Q L GT IGKQTVRLSWG + GNKQWRGD N WN
Sbjct: 1 KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWN 42
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D++L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKII 261
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 49/185 (26%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG + N
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE--ING 258
Query: 63 ATIFVGA-----------------------------------LDSNVSDKDLRELFSHFG 87
IFVG LD + D+ LR+ FS FG
Sbjct: 259 KIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 88 EILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 319 SITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERK 375
Query: 144 DHINH 148
H+ +
Sbjct: 376 AHLTN 380
Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|367051094|ref|XP_003655926.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
gi|347003190|gb|AEO69590.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
Length = 500
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 33/163 (20%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
+T +L++ F K+ D N YGFV + D RAM +NG
Sbjct: 101 VTEDVLRQIFETTGHVQSVKIIPDKNA-RGYNYGFVEYDDPGAAERAMQTLNGRRVHQSE 159
Query: 56 -------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------V 96
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 160 IRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGR 219
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 220 SRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNWANQKGQP 262
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + SVKI K GFV++ + AE
Sbjct: 86 EPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNARGYNYGFVEYDDPGAAER 145
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + N + D NH+
Sbjct: 146 AMQTLNGRRVHQSEIRVNWAYQSNNAN-KEDTSNHF 180
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + D+ LF +FG ++ + +G FV+ ++A +A+ +L G +
Sbjct: 307 TCYVGNLTPYTTQNDIVPLFQNFGFVVESRFQADRGFAFVKMDTHENAAMAICQLNGYNV 366
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 367 NGRPLKCSWG 376
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIKKMNGMLLNDRKV 168
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIKKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|608549|gb|AAA96940.1| ribonucleoprotein [Danio rerio]
gi|68085524|gb|AAH65965.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Danio rerio]
Length = 367
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 26/145 (17%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 73 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 132
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKI-------PVG--KGCGFVQFANRKDAEVALQ 116
+V L ++ K+L +LFS +G I++ +I P G +G GF++F R +AE A++
Sbjct: 133 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIK 192
Query: 117 KLQGTAI--GKQTVRLSWGHNPGNK 139
L G + + + + +NP K
Sbjct: 193 GLNGQKPSGAAEPITVKFANNPSQK 217
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 254 AYGVKRFSPITIDSMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 313
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 314 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 366
>gi|348525751|ref|XP_003450385.1| PREDICTED: ELAV-like protein 2-like [Oreochromis niloticus]
Length = 440
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 148 CKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 207
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL- 118
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 208 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLN 267
Query: 119 -QGTAIGKQTVRLSWGHNPGNK 139
Q + + + + +NP K
Sbjct: 268 CQKPPGATEPITVKFANNPSQK 289
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A VA+ L
Sbjct: 359 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 418
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 419 NGYRLGDRVLQVSFKTNKTHK 439
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 35/151 (23%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D T +KGYGFV F ++ + A+ MNG
Sbjct: 128 ISDARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMNGQWLSGRAIRTNWATRKPPPPRQ 187
Query: 56 -------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGF 102
+ N T+++G + + +++ +RE FSH+G I V+I KG F
Sbjct: 188 PETTKQLSYDDVCNSSSYTNTTVYIGGVTTGLTEGKMRETFSHYGHIQEVRIFPDKGYAF 247
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++F + A A+ + G+ I V+ SWG
Sbjct: 248 IRFMTHESAAHAIVSVNGSQINGHMVKCSWG 278
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 35 YGFVRFGDENERSRAMIEMNG-------------------SDGKSNNATIFVGALDSNVS 75
Y FV F + + + A+ MNG SN+ +FVG L S V
Sbjct: 55 YCFVEFVEHSHAAAALQTMNGRMILGKEVKVNWATTPSSMKKDTSNHHHVFVGDLSSEVD 114
Query: 76 DKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129
DL+ F+ FG+I ++ KG GFV F N+ DAE A+Q + G + + +R
Sbjct: 115 TPDLKAAFAPFGQISDARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMNGQWLSGRAIR 174
Query: 130 LSWG 133
+W
Sbjct: 175 TNWA 178
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-----CGFVQFANRKDAEVALQKL 118
T++VG LD V++ + +LF G S K+ G C FV+F A ALQ +
Sbjct: 15 TLYVGNLDRQVTEAFILQLFGQIGPCKSCKMIAEHGGNDPYC-FVEFVEHSHAAAALQTM 73
Query: 119 QGTAIGKQTVRLSWGHNPGNKQWRGDHINH 148
G I + V+++W P + + D NH
Sbjct: 74 NGRMILGKEVKVNWATTPSSM--KKDTSNH 101
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 24/146 (16%)
Query: 5 QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN---------- 54
Q+ D+ N + Q R V D + + GYG+V F + + +RA+ +N
Sbjct: 43 QLYDLFNQLGQVVSVR--VCRDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIR 100
Query: 55 -------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGF 102
S KS IF+ LD + K L + FS FG ILS K+ KG GF
Sbjct: 101 IMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGF 160
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTV 128
VQF N + A+ A++KL G + + V
Sbjct: 161 VQFDNEESAQKAIEKLNGMLLNDKQV 186
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV DS +G +KGYGFV+F +E +A+ ++NG
Sbjct: 127 IDHKALHDTFSTFGNILSCKVATDS-SGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 185
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS-VKIPVGKG- 99
+ K+ +FV L + +D +L+ +F FG I S V + G G
Sbjct: 186 VYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGK 245
Query: 100 --C-GFVQFANRKDAEVALQKLQG 120
C GFV F N DA A++ L G
Sbjct: 246 SKCFGFVNFENADDAARAVEALNG 269
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG LD NV+D L +LF+ G+++SV++ G G+V F+N +DA AL
Sbjct: 29 SLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDV 88
Query: 118 LQGTAIGKQTVRLSWGH 134
L T + + +R+ + H
Sbjct: 89 LNFTPLNNRPIRIMYSH 105
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 39/164 (23%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------- 55
T + A V D + G +K +GFV F + ++ +RA+ +NG
Sbjct: 232 TITSAVVMRDGD-GKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSEREN 290
Query: 56 ------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGK 98
+ K A ++V LD ++ D L+ELFS FG I S K+ + +
Sbjct: 291 ELKQRFEQSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISR 350
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G GFV F+ +A AL ++ G + + + ++ +++ R
Sbjct: 351 GSGFVAFSTPDEASRALLEMNGKMVVSKPLYVTLAQRKEDRRAR 394
>gi|189233813|ref|XP_971256.2| PREDICTED: similar to RNA-binding protein, putative [Tribolium
castaneum]
Length = 352
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 23/133 (17%)
Query: 29 TGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIFVGALDSN 73
TG + GYGFV + + +A+ +NG S A ++V L N
Sbjct: 81 TGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKN 140
Query: 74 VSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQGTAI--GK 125
++ +DL LFS +G I++ +I + KG GF++F R +AE A+Q+L GT
Sbjct: 141 MTQQDLESLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRLEAERAIQELNGTIPKGST 200
Query: 126 QTVRLSWGHNPGN 138
+ + + + +NP N
Sbjct: 201 EPITVKFANNPSN 213
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + SVK+ KG GFV N +A VA+Q L
Sbjct: 271 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 330
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 331 NGYTLGNRVLQVSFKTN 347
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 21/102 (20%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI----------------PV----GKGCGFVQ 104
+ V L ++ +++R LFS GE+ S K+ P+ G GFV
Sbjct: 32 LIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKVTGMKLPGVITSPLLTGQSLGYGFVN 91
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHI 146
+ +DAE A+ L G + +T+++S+ P ++ +G ++
Sbjct: 92 YHRPEDAEKAINTLNGLRLQNKTIKVSYAR-PSSEAIKGANL 132
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
++T L+ FS +++ D+ TG +KG GF+RF E RA+ E+NG+ K +
Sbjct: 140 NMTQQDLESLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRLEAERAIQELNGTIPKGS 199
Query: 62 NATIFV 67
I V
Sbjct: 200 TEPITV 205
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 47/184 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG +
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 58 ----GKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGE 88
G++ ++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ K+ R
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ---RKEERQA 376
Query: 145 HINH 148
H+ +
Sbjct: 377 HLTN 380
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 25 PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 85 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 144
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 145 YGFVHFETQEAAERAIEKMNGMLLNDRKV 173
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 6 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 65
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 66 QPADAERALDTMNFDVIKGKPVRIMWSQ 93
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 28/148 (18%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-------- 54
+++S L E FS+A +V D + + GY +V F + + +RA+ +N
Sbjct: 51 VSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEVLNFAPLNNKP 110
Query: 55 ---------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGC 100
S +S +A IF+ LD + +K L E FS FG ILS K+ + KG
Sbjct: 111 IRVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGF 170
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQ+ + A+ A++ L G I + V
Sbjct: 171 GFVQYEKEEAAQNAIKSLNGMLINDKPV 198
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 42/151 (27%)
Query: 30 GHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGA-------------------- 69
G ++ +GF+ F + + SRA+ E+NG K N+ +VG
Sbjct: 256 GKSRCFGFINFENPDAASRAVQELNGK--KINDKEWYVGRAQKKSEREMELKRRFEQILK 313
Query: 70 ---------------LDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRK 109
LD ++ D LRELFS+FG+I S K+ + KG GFV F+ R+
Sbjct: 314 DAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTRE 373
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+A AL ++ G I + + +++ +++
Sbjct: 374 EASQALTEMNGKMISGKPLYVAFAQRKEDRK 404
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 33/150 (22%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L ETFS KV +D G +KG+GFV++ E A+ +NG
Sbjct: 139 IDNKSLHETFSSFGTILSCKVAMDEG-GQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKP 197
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG---- 97
S K+ +FV L + + +DL ++F +G I S + +G
Sbjct: 198 VFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGK 257
Query: 98 -KGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
+ GF+ F N A A+Q+L G I +
Sbjct: 258 SRCFGFINFENPDAASRAVQELNGKKINDK 287
Score = 43.1 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG L+ +VSD L ELFS G+++SV++ G +V F N DA AL+
Sbjct: 41 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEV 100
Query: 118 LQGTAIGKQTVRLSWGH-NPGNKQ 140
L + + +R+ + + +P +++
Sbjct: 101 LNFAPLNNKPIRVMYSNRDPSSRR 124
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
++T+S L + F++ +V D T + GYG+V + + + +RA+ +N
Sbjct: 44 NVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNR 103
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S KS IF+ LD + K L + FS FG ILS K+ V KG
Sbjct: 104 PIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKG 163
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQF + A+ A++KL G + + V
Sbjct: 164 YGFVQFDTEEAAQKAIEKLNGMLLNDKQV 192
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 43/176 (24%)
Query: 10 TNSILQETFSR-----AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------- 55
T+ L++TF + V + G +K +GFV F ++ +RA+ +NG
Sbjct: 225 TDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWY 284
Query: 56 ------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS 91
+ K A ++V LD +++D+ L+ELFS +G I S
Sbjct: 285 VGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITS 344
Query: 92 VKI-----PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
K+ V +G GFV F+ ++A AL ++ G + + + ++ +++ R
Sbjct: 345 CKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRAR 400
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 37/149 (24%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV +D +G +KGYGFV+F E +A+ ++NG
Sbjct: 133 IDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQ 191
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS-VKIPVGK 98
K NN +FV L + +D +L++ F FG I S V + G
Sbjct: 192 VYVGPFLRKQERESTGDRAKFNN--VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGD 249
Query: 99 G---C-GFVQFANRKDAEVALQKLQGTAI 123
G C GFV F + DA A++ L G I
Sbjct: 250 GKSKCFGFVNFESTDDAARAVEALNGKKI 278
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG LD NV+D L +LF+ G+++SV++ G G+V ++N +DA AL
Sbjct: 35 SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 94
Query: 118 LQGTAIGKQTVRLSWGH 134
L T + + +R+ + H
Sbjct: 95 LNFTPLNNRPIRIMYSH 111
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 44/181 (24%)
Query: 8 DITNSILQETFSRA---KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD------- 57
D+ + L++ F A KV D +G +KG+GFV F + +A+ EMNG +
Sbjct: 201 DMDDERLKDLFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 259
Query: 58 -GKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
G++ ++V LD + D+ LR+ FS FG I S
Sbjct: 260 VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 319
Query: 92 VKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN 147
K+ + KG GFV F++ ++A A+ ++ G + + + ++ K+ R H+
Sbjct: 320 AKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ---RKEERQAHLT 376
Query: 148 H 148
+
Sbjct: 377 N 377
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS----------------NV------SDKDLRELFSHFGEILSVKIPV---- 96
+FVG S NV D D L FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESG 225
Query: 97 -GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 257
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|347446708|ref|NP_001231529.1| ELAV-like protein 4 isoform 1 [Danio rerio]
Length = 411
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 26/145 (17%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 117 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 176
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKI-------PVG--KGCGFVQFANRKDAEVALQ 116
+V L ++ K+L +LFS +G I++ +I P G +G GF++F R +AE A++
Sbjct: 177 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIK 236
Query: 117 KLQGTAI--GKQTVRLSWGHNPGNK 139
L G + + + + +NP K
Sbjct: 237 GLNGQKPSGAAEPITVKFANNPSQK 261
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 298 AYGVKRFSPITIDSMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 357
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 358 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 410
>gi|157131270|ref|XP_001655847.1| gar2, putative [Aedes aegypti]
gi|108871595|gb|EAT35820.1| AAEL012045-PA, partial [Aedes aegypti]
Length = 954
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFAN 107
+G N +++G L+ +S+++L ELF +G + S+KI G+ CGFV + +
Sbjct: 189 NGDPNTTNLYLGNLNPKISEQELMELFGKYGPLASIKIMWPRSEEERARGRNCGFVAYMS 248
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSWG 133
R+DAE AL+ L G + ++L WG
Sbjct: 249 RRDAERALRALNGKEVMNYLMKLGWG 274
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D++L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 116 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 171
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S ++ D+ L+ELFS +G+ LSVK+
Sbjct: 172 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD 231
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV F +DA A++++ G I + V
Sbjct: 232 PTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMV 267
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E FS+ KV D TG +KG+GFV F + ++A+ EMNG D N
Sbjct: 207 DMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKD--IN 263
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
+FVG LD + D+ LR+ FS F
Sbjct: 264 GKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 323
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 324 GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 380
Query: 143 GDHINH 148
H+ +
Sbjct: 381 KAHLTN 386
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS +F+ LD ++ +K L + FS FG ILS K+ KG FV F + A+ A
Sbjct: 101 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRA 160
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 161 IEKMNGMLLNDRKV 174
>gi|347446713|ref|NP_571528.2| ELAV-like protein 4 isoform 3 [Danio rerio]
Length = 403
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 26/145 (17%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 109 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 168
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKI-------PVG--KGCGFVQFANRKDAEVALQ 116
+V L ++ K+L +LFS +G I++ +I P G +G GF++F R +AE A++
Sbjct: 169 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIK 228
Query: 117 KLQGTAI--GKQTVRLSWGHNPGNK 139
L G + + + + +NP K
Sbjct: 229 GLNGQKPSGAAEPITVKFANNPSQK 253
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 290 AYGVKRFSPITIDSMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 349
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 350 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 402
>gi|347446711|ref|NP_001231530.1| ELAV-like protein 4 isoform 2 [Danio rerio]
Length = 398
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 26/145 (17%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 104 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 163
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKI-------PVG--KGCGFVQFANRKDAEVALQ 116
+V L ++ K+L +LFS +G I++ +I P G +G GF++F R +AE A++
Sbjct: 164 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIK 223
Query: 117 KLQGTAI--GKQTVRLSWGHNPGNK 139
L G + + + + +NP K
Sbjct: 224 GLNGQKPSGAAEPITVKFANNPSQK 248
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 285 AYGVKRFSPITIDSMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 344
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 345 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 397
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVI 261
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 49/185 (26%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG + N
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE--ING 258
Query: 63 ATIFVGA-----------------------------------LDSNVSDKDLRELFSHFG 87
IFVG LD + D+ LR+ FS FG
Sbjct: 259 KVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 88 EILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 319 SITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERK 375
Query: 144 DHINH 148
H+ +
Sbjct: 376 AHLTN 380
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|402079107|gb|EJT74372.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 482
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 38/166 (22%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N KG YGFV + D RAM +NG
Sbjct: 98 VTEDVLRQIFETTGHVQNVKIIPDKNA---KGFNYGFVEYDDPGAADRAMQTLNGRRVHQ 154
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 155 SEIRVNWAYQSANTTTKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMK 214
Query: 96 --VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 215 TGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKGQP 260
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD+ V++ LR++F G + +VKI K GFV++ + A+
Sbjct: 83 EPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGFNYGFVEYDDPGAADR 142
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + N + D NH+
Sbjct: 143 AMQTLNGRRVHQSEIRVNWAYQSANTTTKEDTSNHF 178
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 61/187 (32%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENER-------------SR 48
++ + +L + FS A+V D TG ++GYGFV F D + SR
Sbjct: 188 EVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSR 247
Query: 49 AM------------------------------------------IEMNGSDGKSNNATIF 66
A+ EM + + T +
Sbjct: 248 AIRCNWANQKGQPSIAQQQAMQAMGMTPTTPYGHHHFPTHGMQSYEMVLNQTPAYQTTCY 307
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
VG L + DL LF +FG ++ + +G F++ ++A A+ L G + +
Sbjct: 308 VGNLTPYTTANDLVPLFQNFGYVVESRFQSDRGFAFIKMDTHENATSAICNLNGYNVNGR 367
Query: 127 TVRLSWG 133
++ SWG
Sbjct: 368 PLKCSWG 374
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 33/150 (22%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAM----IEMNGS-------------DG- 58
T A++ D TG KG+G+V F + + AM E++G DG
Sbjct: 208 TVESARIITDKETGRAKGFGYVTFESADALTAAMALTGTELDGREIRVDVSTPKPPRDGN 267
Query: 59 ---------KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFV 103
+ T+F+G L NV++ ++RE FS +G+++SV+ P KG G+V
Sbjct: 268 RQGRKEAPQSAPTTTLFLGNLSFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYV 327
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ + + A+ A++ L G I +++RL +
Sbjct: 328 EYGDVETAQKAVEGLNGVEIAGRSLRLDYA 357
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 115
N+T+FVG L NV ++ L F+ G + S +I KG G+V F + DA A
Sbjct: 182 NSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYVTFES-ADALTAA 240
Query: 116 QKLQGTAIGKQTVR--LSWGHNP--GNKQWRGD 144
L GT + + +R +S P GN+Q R +
Sbjct: 241 MALTGTELDGREIRVDVSTPKPPRDGNRQGRKE 273
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D++L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKII 261
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 49/185 (26%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG + N
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE--ING 258
Query: 63 ATIFVGA-----------------------------------LDSNVSDKDLRELFSHFG 87
IFVG LD + D+ LR+ FS FG
Sbjct: 259 KIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 88 EILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 319 SITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERK 375
Query: 144 DHINH 148
H+ +
Sbjct: 376 AHLTN 380
Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 24/146 (16%)
Query: 5 QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNG---- 55
Q+ DI N + Q R V D T + GYG+V + + + +RA+ +NG
Sbjct: 44 QLYDIFNQVGQVVSVR--VCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIR 101
Query: 56 --------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGF 102
S KS IF+ LD + K L + FS FG ILS K+ + KG GF
Sbjct: 102 VMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGF 161
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTV 128
VQF N + A A++KL G + + V
Sbjct: 162 VQFDNEESALKAIEKLNGMLLNDKQV 187
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 33/147 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV +DS +G +KGYGFV+F +E +A+ ++NG
Sbjct: 128 IDHKALHDTFSAFGSILSCKVALDS-SGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQ 186
Query: 56 -----------SDG---KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK 98
DG KS +FV L +++DL + FS FG + S+ + GK
Sbjct: 187 VYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGK 246
Query: 99 G-C-GFVQFANRKDAEVALQKLQGTAI 123
C GFV F N DA A+ L G +
Sbjct: 247 SRCFGFVNFENADDAARAVDTLNGKLV 273
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 38/158 (24%)
Query: 23 VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------------- 55
V + G ++ +GFV F + ++ +RA+ +NG
Sbjct: 238 VVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRF 297
Query: 56 ------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQ 104
+ K A +++ LD ++ D L+ELF+ FG I S K+ + +G GFV
Sbjct: 298 EQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVA 357
Query: 105 FANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
F+ +A AL ++ G + + + ++ +++ R
Sbjct: 358 FSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRAR 395
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 55 GSDGKSNNAT--IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
++G +N T ++VG LD NV+D L ++F+ G+++SV++ G G+V ++
Sbjct: 19 AANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYS 78
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
N +DA AL L T + + +R+ + H
Sbjct: 79 NPQDAARALDVLNFTPLNGKPIRVMYSH 106
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSD 76
T + KV D N G ++G GFV F +E SRA++EMNG S + AL D
Sbjct: 336 TITSCKVMRDPN-GISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYV---ALAQRKED 391
Query: 77 KDLRELFSHFGEILSVKIP 95
+ R L + F +I SV +P
Sbjct: 392 RRAR-LQAQFSQIRSVPMP 409
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 28/148 (18%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-------- 54
+++S LQ FS A+V D T H+ GYG+V F D +A+ +N
Sbjct: 24 VSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLNYESLMGRP 83
Query: 55 ---------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGC 100
S KS IF+ LD ++ K+L + FS FG ILS KI + KG
Sbjct: 84 IRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGY 143
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + AE A++K+ I + V
Sbjct: 144 GFVHFEKEECAERAIEKINNMIIRDRVV 171
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 44/160 (27%)
Query: 11 NSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN---- 61
N L+E F+ ++ + + G +KG+GFV F D + A+ M+G + +
Sbjct: 205 NEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYC 264
Query: 62 ------------------------------NATIFVGALDSNVSDKDLRELFSHFGEILS 91
N ++V LD N+ DK L E FS G I S
Sbjct: 265 ARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITS 324
Query: 92 VKI-----PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
K+ KG GFV FAN + A A+ + GT IG +
Sbjct: 325 AKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSK 364
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 33/142 (23%)
Query: 14 LQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------ 55
L +TFS K+ +D N G +KGYGFV F E RA+ ++N
Sbjct: 117 LYDTFSFFGRILSCKIVMDEN-GQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGK 175
Query: 56 ----SDGKSNNATI-----FVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCG 101
++ KS + ++ ++ L+E+F+ FGEI S + KG G
Sbjct: 176 FIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFG 235
Query: 102 FVQFANRKDAEVALQKLQGTAI 123
FV F + AE A++ + G I
Sbjct: 236 FVCFLDPDHAENAVKTMHGKEI 257
Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVAL 115
N++++VG L VSD L+ FS G +LS ++ G G+V F + K AE AL
Sbjct: 12 NSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQAL 71
Query: 116 QKLQGTAIGKQTVRLSWGH 134
+ L ++ + +R+ W
Sbjct: 72 EVLNYESLMGRPIRIMWSQ 90
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+I + L+E FS AKV D+N +KG+GFV F + + +RA+ +MNG+
Sbjct: 306 NIDDKRLEEAFSVHGSITSAKVMKDANN-RSKGFGFVCFANPEQAARAVTDMNGT 359
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 28/148 (18%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN-------- 54
+++S LQ FS A+V D T H+ GYG+V F D +A+ +N
Sbjct: 24 VSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLNYESLMGRP 83
Query: 55 ---------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGC 100
S KS IF+ LD ++ K+L + FS FG ILS KI + KG
Sbjct: 84 IRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGY 143
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + AE A++K+ I + V
Sbjct: 144 GFVHFEKEECAERAIEKINNMIIRDRVV 171
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 44/160 (27%)
Query: 11 NSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN---- 61
N L+E F+ ++ + + G +KG+GFV F D + A+ M+G + +
Sbjct: 205 NEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYC 264
Query: 62 ------------------------------NATIFVGALDSNVSDKDLRELFSHFGEILS 91
N ++V LD N+ DK L E FS G I S
Sbjct: 265 ARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITS 324
Query: 92 VKI-----PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
K+ KG GFV FAN + A A+ + GT IG +
Sbjct: 325 AKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSK 364
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 33/142 (23%)
Query: 14 LQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------ 55
L +TFS K+ +D N G +KGYGFV F E RA+ ++N
Sbjct: 117 LYDTFSFFGRILSCKIVMDEN-GQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGK 175
Query: 56 ----SDGKSNNATI-----FVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCG 101
++ KS + ++ ++ L+E+F+ FGEI S + KG G
Sbjct: 176 FIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFG 235
Query: 102 FVQFANRKDAEVALQKLQGTAI 123
FV F + AE A++ + G I
Sbjct: 236 FVCFLDPDHAENAVKTMHGKEI 257
Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVAL 115
N++++VG L VSD L+ FS G +LS ++ G G+V F + K AE AL
Sbjct: 12 NSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQAL 71
Query: 116 QKLQGTAIGKQTVRLSWGH 134
+ L ++ + +R+ W
Sbjct: 72 EVLNYESLMGRPIRIMWSQ 90
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
+I + L+E FS AKV D+N +KG+GFV F + + +RA+ +MNG+
Sbjct: 306 NIDDKRLEEAFSVHGSITSAKVMKDANN-RSKGFGFVCFANPEQAARAVTDMNGT 359
>gi|395530250|ref|XP_003767210.1| PREDICTED: ELAV-like protein 4 [Sarcophilus harrisii]
Length = 707
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D + +A+ +NG S +A ++
Sbjct: 417 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 476
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 477 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 536
Query: 121 TAIGKQT--VRLSWGHNPGNK 139
T + + + +NP K
Sbjct: 537 QKPSGATEPITVKFANNPSQK 557
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 594 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 653
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 654 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 706
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 33/164 (20%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I NS L++ F + +KV + S G +KGYGFV+F E + A+ +NG
Sbjct: 109 IDNSGLEDMFKKFGNILSSKVVM-SEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQ 167
Query: 56 -------------SDGKSNNAT-IFVGALDSNVSDKDLRELFSHFGEILSVKIP-----V 96
S G T +++ LD ++S+ LRE FS FG+I+S+ + +
Sbjct: 168 IYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGM 227
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
KG GFV F N +DA+ A++ + G +G + + ++ ++
Sbjct: 228 SKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAERE 271
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 67/157 (42%), Gaps = 45/157 (28%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG--- 58
DI+ ++L+E FS V DSN G +KG+GFV F + + RAM MNG
Sbjct: 199 DISETLLREKFSSFGKIISLAVAKDSN-GMSKGFGFVNFDNPEDAKRAMETMNGLQLGSK 257
Query: 59 ------------------------------KSNNATIFVGALDSNVSDKDLRELFSHFGE 88
K + I+V +D NVSD+ LR+ FS G
Sbjct: 258 ILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGT 317
Query: 89 ILSVKIP-----VGKGCGFVQFANRKDAEVALQKLQG 120
I S KI + KG GFV F+ ++A A+ G
Sbjct: 318 ITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHG 354
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+++S L + FS ++ DS++G + YG+V F ++ RA+ N S
Sbjct: 20 DLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVKNHSTLNGK 79
Query: 58 -------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KG 99
KS +FV L ++ + L ++F FG ILS K+ + KG
Sbjct: 80 AIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQF + A A+++L G +G + +
Sbjct: 140 YGFVQFETEESANAAIERLNGYLVGDKQI 168
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGKGC--GFVQFANRKDAEVALQ 116
A+++VG L ++SD L + FS F + SV+I GK G+V F + DA A++
Sbjct: 10 ASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIE 69
Query: 117 KLQGTAIGKQTVRLSW 132
+ + + +R+ W
Sbjct: 70 VKNHSTLNGKAIRVMW 85
>gi|27819958|gb|AAL39666.2| LD23810p, partial [Drosophila melanogaster]
Length = 958
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANR 108
G N +++G L+ +S++ L E+F +G + S+KI G+ CGFV + +R
Sbjct: 211 GDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSR 270
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
KDAE AL+ L G I +RL WG
Sbjct: 271 KDAERALKTLNGRYIMGYEMRLGWG 295
>gi|19922658|ref|NP_611535.1| CG9346 [Drosophila melanogaster]
gi|7291222|gb|AAF46654.1| CG9346 [Drosophila melanogaster]
gi|220947134|gb|ACL86110.1| CG9346-PA [synthetic construct]
gi|220956694|gb|ACL90890.1| CG9346-PA [synthetic construct]
Length = 957
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANR 108
G N +++G L+ +S++ L E+F +G + S+KI G+ CGFV + +R
Sbjct: 210 GDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSR 269
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
KDAE AL+ L G I +RL WG
Sbjct: 270 KDAERALKTLNGRYIMGYEMRLGWG 294
>gi|195585268|ref|XP_002082411.1| GD11555 [Drosophila simulans]
gi|194194420|gb|EDX07996.1| GD11555 [Drosophila simulans]
Length = 989
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANR 108
G N +++G L+ +S++ L E+F +G + S+KI G+ CGFV + +R
Sbjct: 210 GDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSR 269
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
KDAE AL+ L G I +RL WG
Sbjct: 270 KDAERALKTLNGRYIMGYEMRLGWG 294
>gi|195346271|ref|XP_002039689.1| GM15794 [Drosophila sechellia]
gi|194135038|gb|EDW56554.1| GM15794 [Drosophila sechellia]
Length = 957
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANR 108
G N +++G L+ +S++ L E+F +G + S+KI G+ CGFV + +R
Sbjct: 210 GDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSR 269
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
KDAE AL+ L G I +RL WG
Sbjct: 270 KDAERALKTLNGRYIMGYEMRLGWG 294
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D++L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGR 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + AE A++K+ G + + V
Sbjct: 141 GFVHFETHEAAERAIEKMNGMLLNDRKV 168
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 40/168 (23%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELFS +G LS+++
Sbjct: 166 RKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
KG GFV F +DA+ A+ + G + + V + G +Q
Sbjct: 226 DGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQ 273
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + L+E FS+ +V D + G +KG+GFV F + +A+ +MNG +
Sbjct: 201 DMDDEKLKELFSKYGPALSIRVMTD-DGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGR 259
Query: 58 ----------GKSNN-------------------ATIFVGALDSNVSDKDLRELFSHFGE 88
G+ N ++V LD + D+ LR+ FS FG
Sbjct: 260 QVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGRPLRIMWSQ 88
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|425768240|gb|EKV06770.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum Pd1]
gi|425770410|gb|EKV08883.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum PHI26]
Length = 482
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 35/166 (21%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHT-KG--YGFVRFGDENERSRAMIEMNG---- 55
+T IL++ F K+ D N T KG YGFV F D RAM +NG
Sbjct: 102 VTEDILKQIFETTGHVVSVKIIPDKNGQFTTKGHNYGFVEFDDPGAAERAMQTLNGRRIH 161
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 162 QSEIRVNWAYQSNSTSKEDTSNHFHIFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMK 221
Query: 96 --VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R +A+ AL + G +G + +R +W + G
Sbjct: 222 TGRSRGYGFVAFRDRTEADKALNSMDGEWLGSRAIRCNWANQKGQP 267
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANRK 109
+ N ++VG LD V++ L+++F G ++SVKI G GFV+F +
Sbjct: 87 EPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNGQFTTKGHNYGFVEFDDPG 146
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
AE A+Q L G I + +R++W + N + D NH+
Sbjct: 147 AAERAMQTLNGRRIHQSEIRVNWAYQ-SNSTSKEDTSNHF 185
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 15 QETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNV 74
Q + S+ + + T +G F +S M+ ++ T +VG L
Sbjct: 266 QPSISQQQALVAMGMTPTTAFGHHHFPTHGIQSYDMVAQQTPQWQT---TCYVGNLTPYT 322
Query: 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+ DL LF +FG +L ++ +G FV+ + ++A A+ +L G + + ++ SWG
Sbjct: 323 TQNDLVPLFQNFGYVLETRLQADRGFAFVKMDSHENAASAICQLNGYNVNGRPLKCSWG 381
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++ + +L + FS A+V D TG ++GYGFV F D E +A+ M+G
Sbjct: 195 EVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRTEADKALNSMDG 248
>gi|402589265|gb|EJW83197.1| RNA recognition domain-containing protein, partial [Wuchereria
bancrofti]
Length = 231
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 40/168 (23%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
+++ N L+ F S AKV D T +KGYGFV F + +A+ EMNG
Sbjct: 30 TEVNNCTLKAAFESFGEISEAKVIRDPQTLKSKGYGFVSFPVKENAQKAIEEMNGQMIGR 89
Query: 57 ------------DGKSNNA------------------TIFVGALDSNVSDKDLRELFSHF 86
DG NA +++VG + +D++L + FS
Sbjct: 90 RQIRTNWAVRRFDGGEENAMKPPTYDNIFNATHAANTSVYVGGISPVTTDEELMQSFSAI 149
Query: 87 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
++ V++ +G FV++ N+ A A+ + G I Q +R SW
Sbjct: 150 ATVIEVRLFKQQGYAFVRYLNKDAAARAIMSMNGKVINGQKIRCSWSR 197
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---P---VGKGCGFVQFANRKDAEV 113
S N +FVG L + V++ L+ F FGEI K+ P KG GFV F +++A+
Sbjct: 18 SKNYHVFVGDLSTEVNNCTLKAAFESFGEISEAKVIRDPQTLKSKGYGFVSFPVKENAQK 77
Query: 114 ALQKLQGTAIGKQTVRLSWG 133
A++++ G IG++ +R +W
Sbjct: 78 AIEEMNGQMIGRRQIRTNWA 97
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A ++ D T + GY +V + + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 42.7 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS++I K G +V +
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+D+E AL + I + VR+ W
Sbjct: 61 QPRDSERALDTMNFDVIKGKPVRIMWSQ 88
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGR 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D L+++FS +G +S+++
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
+G GFV F +DA+ A+ ++ G + + +
Sbjct: 226 ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLI 261
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + L++ FS+ +V D N G ++G+GFV F + RA+ EMNG +
Sbjct: 201 DMDDDKLKDIFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVDEMNGKEMNGK 259
Query: 58 ----GKSNN-------------------------ATIFVGALDSNVSDKDLRELFSHFGE 88
G++ ++V LD + D+ LR+ FS FG
Sbjct: 260 LIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
+D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 TDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 RPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ ++ LR++F+ +G +S+++
Sbjct: 166 RKVFVGRFKSRKEREAELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
+G GFV F +DA+ A+ ++ G + + +
Sbjct: 226 DSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPI 261
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 37/150 (24%)
Query: 28 NTGHTKGYGFVRFGDENERSRAMIEMNGSD--GKS------------------------- 60
++G ++G+GFV F + +A+ EMNG + GK
Sbjct: 226 DSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQ 285
Query: 61 ------NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKD 110
++V LD + D+ LR+ FS FG I S K+ + KG GFV F++ ++
Sbjct: 286 DRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEGGRSKGFGFVCFSSPEE 345
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
A A+ ++ G + + + ++ +Q
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L ++V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
T + AKV ++ G +KG+GFV F E ++A+ EMNG
Sbjct: 319 TITSAKVMLEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
>gi|125586872|gb|EAZ27536.1| hypothetical protein OsJ_11491 [Oryza sativa Japonica Group]
Length = 257
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 7/57 (12%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
SD+T+ ILQ+TF AKV D +TG +KGYGFV+FGD +E++RAM EMNG
Sbjct: 168 ASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNG 224
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 33/149 (22%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDE------------------------NERSRAMIEMNGS 56
AK+ + TG +GYGF+ FG N + E G
Sbjct: 96 AKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGYNGQMMPNGNQVFKLNWATSGAGEKRGD 155
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRK 109
DG ++ TIFVG L S+V+D L++ F +H+ + K+ KG GFV+F +
Sbjct: 156 DG--SDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLD 213
Query: 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
+ A+ ++ G + +R+ N N
Sbjct: 214 EQTRAMTEMNGQYCSSRPMRIGPASNKKN 242
>gi|384249712|gb|EIE23193.1| hypothetical protein COCSUDRAFT_23819 [Coccomyxa subellipsoidea
C-169]
Length = 464
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 46 RSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQF 105
R AM ++ + + T++VG L V D+DLR+ F +GEI S+KI + C FV +
Sbjct: 202 RVDAMPKIEAPEDREIK-TLYVGGLAPEVEDQDLRDHFYPYGEISSIKILSARHCAFVTY 260
Query: 106 ANRKDAEVALQKLQGTAIGK-QTVRLSWG 133
A R AE A Q+LQ I + Q +L WG
Sbjct: 261 ATRPAAERAAQELQHKLIVRGQRAKLMWG 289
>gi|194379766|dbj|BAG58235.1| unnamed protein product [Homo sapiens]
Length = 181
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 37/150 (24%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55
A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 3 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 62
Query: 56 ------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFV 103
+ N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV
Sbjct: 63 NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFV 122
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+F+ + A + + GT I V+ WG
Sbjct: 123 RFSTHESAAHVIVSVNGTTIEGHVVKCYWG 152
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D++L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|195486673|ref|XP_002091605.1| GE12157 [Drosophila yakuba]
gi|194177706|gb|EDW91317.1| GE12157 [Drosophila yakuba]
Length = 960
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANR 108
G N +++G L+ +S++ L E+F +G + S+KI G+ CGFV + +R
Sbjct: 210 GDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSR 269
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
KDAE AL+ L G I +RL WG
Sbjct: 270 KDAERALRTLNGRYIMGYEMRLGWG 294
>gi|195123969|ref|XP_002006474.1| GI21069 [Drosophila mojavensis]
gi|193911542|gb|EDW10409.1| GI21069 [Drosophila mojavensis]
Length = 936
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANR 108
G N +++G L+ +S++ L E+F +G + S+KI G+ CGFV + +R
Sbjct: 189 GDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSR 248
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
KDAE AL+ L G I +RL WG
Sbjct: 249 KDAERALRTLNGRYIMGYEMRLGWG 273
>gi|194881758|ref|XP_001974988.1| GG22076 [Drosophila erecta]
gi|190658175|gb|EDV55388.1| GG22076 [Drosophila erecta]
Length = 960
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANR 108
G N +++G L+ +S++ L E+F +G + S+KI G+ CGFV + +R
Sbjct: 210 GDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSR 269
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
KDAE AL+ L G I +RL WG
Sbjct: 270 KDAERALRTLNGRYIMGYEMRLGWG 294
>gi|449664731|ref|XP_002156267.2| PREDICTED: nucleolysin TIA-1 isoform p40-like [Hydra
magnipapillata]
Length = 361
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
TIFVG LD +++D +LR+ F FGEIL+ K+ K GF+ F N+ DAE A++
Sbjct: 72 TIFVGDLDDDLTDSELRQAFEPFGEILNAKVVRDAATEKSKNYGFISFTNKPDAERAIRD 131
Query: 118 LQGTAIGKQTVRLSWG 133
+ G + ++ ++ +W
Sbjct: 132 MHGAMLKRRPIKTNWA 147
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 37/174 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGK-- 59
D+T+S L++ F AKV D+ T +K YGF+ F ++ + RA+ +M+G+ K
Sbjct: 81 DLTDSELRQAFEPFGEILNAKVVRDAATEKSKNYGFISFTNKPDAERAIRDMHGAMLKRR 140
Query: 60 ----------------------------SNNATIFVGALDSNVSDKDLRELFSHFGEIL- 90
+N T++V L +SD+ L + F G+I+
Sbjct: 141 PIKTNWATRNQNSKPSQLDYDQVFKEVSESNCTVYVTNLPDRISDEVLVKHFEDCGKIVG 200
Query: 91 SVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
+ ++ GK F++F + A A+ K G+ + ++ WG + + Q GD
Sbjct: 201 TPRVFDGKNFAFIRFESHAAATTAIVKGNGSELNGAILKCWWGKDSESHQAGGD 254
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGR 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + AE A++K+ G + + V
Sbjct: 141 GFVHFETHEAAERAIEKMNGMLLNDRKV 168
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 40/168 (23%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF ++G LSV++
Sbjct: 166 RKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
KG GFV F +DA+ A+ + G + + V + G +Q
Sbjct: 226 DTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQ 273
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + L+E F +V D +TG +KG+GFV F + +A+ +MNG +
Sbjct: 201 DMDDEKLKELFGNYGPALSVRVMTD-DTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGR 259
Query: 58 ----------GKSNN-------------------ATIFVGALDSNVSDKDLRELFSHFGE 88
G+ N ++V LD + D+ LR+ FS FG
Sbjct: 260 QVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGRPLRIMWSQ 88
>gi|380023603|ref|XP_003695607.1| PREDICTED: nucleolin-like [Apis florea]
Length = 360
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 38/171 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------------------------- 56
+V D T +KGYGFV F + E A+ MNG
Sbjct: 63 RVVRDPQTLKSKGYGFVSFVKKAEAESAIGAMNGQWLGSRSIRTNWATRKPPAPKSEANA 122
Query: 57 ----------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFA 106
N T++ G L + ++++ +++ FS FG I +++ KG F++F+
Sbjct: 123 KPLTFDEVYNQSSPTNCTVYCGGLTNGLTEELMQKTFSPFGSIQEIRVFKDKGYAFIRFS 182
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH---NPGNKQWRGDHINHWNGAHY 154
++ A A+ + T I QTV+ SWG +P N Q G ++ +Y
Sbjct: 183 TKESATHAIVAVHNTDINGQTVKCSWGKESGDPNNAQQTGQALSSATYPYY 233
>gi|384501386|gb|EIE91877.1| hypothetical protein RO3G_16588 [Rhizopus delemar RA 99-880]
Length = 184
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 46 RSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKG 99
R R +E + N+ TI+ G L + ++D+ +F +G + S+ +P+ KG
Sbjct: 92 RPRRPVERGSEQERKNSTTIYAGNLPYDFVERDVATMFERYGRLKSITVPLDTVTNKNKG 151
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
FV+F R+DAE A +K G ++ + +RL W
Sbjct: 152 FAFVEFEERRDAEDAFEKFDGFSVEGRRLRLDW 184
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D++L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKII 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 49/185 (26%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG + N
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE--ING 258
Query: 63 ATIFVGA-----------------------------------LDSNVSDKDLRELFSHFG 87
IFVG LD + D+ LR+ FS FG
Sbjct: 259 KIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 88 EILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 319 SITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERK 375
Query: 144 DHINH 148
H+ +
Sbjct: 376 AHLTN 380
Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|195110887|ref|XP_002000011.1| GI22766 [Drosophila mojavensis]
gi|193916605|gb|EDW15472.1| GI22766 [Drosophila mojavensis]
Length = 387
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 42/175 (24%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---- 56
S+I L+E F S +V D T +KGYGFV F ++E A+ MNG
Sbjct: 54 SEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGS 113
Query: 57 -----------------------------DGKSNNATIFVGALDSNV---SDKDLRELFS 84
+N T++VG ++S + S++ L++ F+
Sbjct: 114 RSIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFA 173
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G I +++ KG FV+F+ ++ A A+ + T I Q V+ SWG G+
Sbjct: 174 PYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKESGDP 228
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 38 VRFGDENER-SRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-- 94
VR GDE E S A + + IFVG L S + + LRE F+ FGEI ++
Sbjct: 19 VRAGDEQESYSAANFKGISRRRRQKQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVR 78
Query: 95 -PV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG--HNPGNKQ 140
P KG GFV F + +AE A+ + G +G +++R +W P +K+
Sbjct: 79 DPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASKE 130
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D++L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKII 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 49/185 (26%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG + N
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE--ING 258
Query: 63 ATIFVGA-----------------------------------LDSNVSDKDLRELFSHFG 87
IFVG LD + D+ LR+ FS FG
Sbjct: 259 KIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 88 EILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 319 SITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERK 375
Query: 144 DHINH 148
H+ +
Sbjct: 376 AHLTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|195051457|ref|XP_001993098.1| GH13638 [Drosophila grimshawi]
gi|193900157|gb|EDV99023.1| GH13638 [Drosophila grimshawi]
Length = 726
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 23/139 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + + + +A+ +NG S A +
Sbjct: 142 CKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANL 201
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L N++ DL LFS FG+I++ +I + KG GF++F R +A+ A+++L
Sbjct: 202 YVSGLPKNMTQSDLESLFSPFGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELN 261
Query: 120 GTAIGKQT--VRLSWGHNP 136
GT T + + + +NP
Sbjct: 262 GTTPKNSTEPITVKFANNP 280
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
++T S L+ FS +++ D+ TG +KG GF+RF E RA+ E+NG+ K++
Sbjct: 209 NMTQSDLESLFSPFGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNS 268
Query: 62 NATIFVGALDSNVSDKDLRELFSHF 86
I V ++ S+K+ + + +
Sbjct: 269 TEPITVKFANNPSSNKNSMQPLAAY 293
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + SVK+ KG GFV N ++A +A+Q L
Sbjct: 361 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 420
Query: 119 QGTAIGKQTVR 129
G +G + ++
Sbjct: 421 NGYTLGNRVLQ 431
>gi|389639074|ref|XP_003717170.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|351642989|gb|EHA50851.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|440475727|gb|ELQ44390.1| nucleolysin TIA-1 [Magnaporthe oryzae Y34]
gi|440486439|gb|ELQ66302.1| nucleolysin TIA-1 [Magnaporthe oryzae P131]
Length = 479
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 38/166 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N KGY GFV + D RAM +NG
Sbjct: 96 VTEDVLRQIFETTGHVQNVKIIPDKNA---KGYNYGFVEYDDPGAADRAMQTLNGRRVHQ 152
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 153 SEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMK 212
Query: 96 --VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 213 TGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQP 258
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD+ V++ LR++F G + +VKI K GFV++ + A+
Sbjct: 81 EPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADR 140
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + + D NH+
Sbjct: 141 AMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHF 176
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 61/187 (32%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENER-------------SR 48
++ + +L + FS A+V D TG ++GYGFV F D ++ SR
Sbjct: 186 EVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSR 245
Query: 49 AM------------------------------------------IEMNGSDGKSNNATIF 66
A+ EM + + T +
Sbjct: 246 AIRCNWANQKGQPSIAQQQAMSAVGMTPTTPFGHHHFPTHGMQSYEMVVNQTPAYQTTCY 305
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
VG L + D+ LF +FG ++ + +G F++ + ++A A+ L G + +
Sbjct: 306 VGNLTPYTTANDVVPLFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICGLNGYNVNGR 365
Query: 127 TVRLSWG 133
++ SWG
Sbjct: 366 PLKCSWG 372
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 35/158 (22%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
DI N L ETFS +K+ D TG +KG+GFV F E+ A+ +NG
Sbjct: 133 DIDNKALFETFSVFGNILSSKIATDE-TGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQ 191
Query: 56 -----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG- 97
+ K++ ++V ++ +D++ ELF+ +G +LS +
Sbjct: 192 EIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTE 251
Query: 98 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
KG GFV F +DA A+++L GT QT+ +S
Sbjct: 252 DGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVS 289
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD-----------------GK 59
+ S +V D+ T + GY +V F D +A+ ++N + K
Sbjct: 60 SVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQLNYTPIKGRLCRIMWSQRDPALRK 119
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVA 114
+ IF+ L ++ +K L E FS FG ILS KI KG GFV F + A+ A
Sbjct: 120 KGSGNIFIKNLHPDIDNKALFETFSVFGNILSSKIATDETGKSKGFGFVHFEHESSAKEA 179
Query: 115 LQKLQGTAIGKQTVRLS 131
+ L G + Q + ++
Sbjct: 180 IDALNGMLLNGQEIYVA 196
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 39/138 (28%)
Query: 27 SNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------------- 57
+ G KG+GFV F + ++A+ E+NG++
Sbjct: 250 TEDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASR 309
Query: 58 ----GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANR 108
K +FV LD ++ D+ L+E F+ +G I SV++ KG GFV F+
Sbjct: 310 LEKMAKYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTP 369
Query: 109 KDAEVAL-QKLQGTAIGK 125
++A A+ +K Q GK
Sbjct: 370 EEATKAITEKNQQIVAGK 387
Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
A+++VG LD VS+ L ++FS G + S+++ G +V F + + + A++
Sbjct: 35 ASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIE 94
Query: 117 KLQGTAIGKQTVRLSWGH 134
+L T I + R+ W
Sbjct: 95 QLNYTPIKGRLCRIMWSQ 112
>gi|260830993|ref|XP_002610444.1| hypothetical protein BRAFLDRAFT_124262 [Branchiostoma floridae]
gi|229295810|gb|EEN66454.1| hypothetical protein BRAFLDRAFT_124262 [Branchiostoma floridae]
Length = 1022
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 60/145 (41%), Gaps = 33/145 (22%)
Query: 35 YGFVRFGDENERSRAMIEMNG-------------------SDGKSNNATIFVGALDSNVS 75
Y FV F D N S A+ MNG SN+ +FVG L +
Sbjct: 155 YCFVEFYDHNHASAALTAMNGRKIMHKEVKVNWATTPSGNKKDTSNHHHVFVGDLSPEID 214
Query: 76 DKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129
DL+ F+ FG+I ++ +G GFV F N+ DAE A+ + G +G + +R
Sbjct: 215 TTDLKAAFAPFGKISDARVVRDAQTAKSRGYGFVSFVNKVDAENAIGAMSGQWLGGRAIR 274
Query: 130 LSWG--------HNPGNKQWRGDHI 146
+W N G KQ D +
Sbjct: 275 TNWATRKPPPPKSNEGQKQLSYDEV 299
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 35/150 (23%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------DGKSN 61
S A+V D+ T ++GYGFV F ++ + A+ M+G KSN
Sbjct: 229 SDARVVRDAQTAKSRGYGFVSFVNKVDAENAIGAMSGQWLGGRAIRTNWATRKPPPPKSN 288
Query: 62 ------------------NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFV 103
N T++ G + +++ +R FS+FG I +++ KG F+
Sbjct: 289 EGQKQLSYDEVLCQASPTNTTVYCGGITKGLTEDLMRNTFSNFGPIQEIRVFPEKGYSFI 348
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
+F + + A +A+ + GT I Q V+ SWG
Sbjct: 349 RFFSHEVAAMAIVTVNGTQIEGQAVKCSWG 378
Score = 42.0 bits (97), Expect = 0.082, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG-----FVQFANRKDA 111
+ +S T++VG L V+++ + +LF G S K+ + + G FV+F + A
Sbjct: 108 EDESRPRTLYVGNLSRQVTEQLILQLFGAIGPCKSCKM-ISEHAGNDPYCFVEFYDHNHA 166
Query: 112 EVALQKLQGTAIGKQTVRLSWGHNP-GNKQWRGDH 145
AL + G I + V+++W P GNK+ +H
Sbjct: 167 SAALTAMNGRKIMHKEVKVNWATTPSGNKKDTSNH 201
>gi|348510833|ref|XP_003442949.1| PREDICTED: ELAV-like protein 1-like [Oreochromis niloticus]
Length = 341
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------ 55
++T L+ FS AK+ D GH+ GYGFV + + ++ RA+ +NG
Sbjct: 45 NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPSDAERAISTLNGLRLQSK 104
Query: 56 ---------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCG----- 101
S +A +++ L N++ KD+ ++FS +G I++ ++ V +G G
Sbjct: 105 TIKVSYARPSSDTIKDANLYISGLPKNMTQKDVEDMFSRYGRIINSRVLVDQGTGSSRGV 164
Query: 102 -FVQFANRKDAEVALQKLQGTAI--GKQTVRLSWGHNP 136
F++F R +AE A++ L G + + + + NP
Sbjct: 165 AFIRFDKRAEAEEAVKNLNGQKPPGASEPITVKFAANP 202
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFA 106
M G +GK + V L N++ +LR LFS GE+ S K+ K G GFV +
Sbjct: 25 MGGDEGKDAKTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYL 84
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWG 133
N DAE A+ L G + +T+++S+
Sbjct: 85 NPSDAERAISTLNGLRLQSKTIKVSYA 111
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IF+ L + + L ++F FG + +VK+ KG GFV N ++A +A+ L
Sbjct: 261 IFIYNLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 320
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ + G+K
Sbjct: 321 NGYRLGDKILQVSFKTSKGHK 341
>gi|198425950|ref|XP_002126161.1| PREDICTED: similar to ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D) [Ciona intestinalis]
Length = 564
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + + +A+ +NG S +A ++
Sbjct: 118 KLIRDKLTGQSLGYGFVNYVKAADAEKAINSLNGLRMQQKTIKVSFARPSTPLIKDANLY 177
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120
V L +++ +DL+ +F FG I++ +I V +G GFV+F R +AE A+ L G
Sbjct: 178 VSGLPKSMTQEDLQRIFHPFGRIITSRILVEPSTGMSRGVGFVRFDKRPEAENAISALNG 237
Query: 121 T--AIGKQTVRLSWGHNPGNK 139
T A K V + + +NP K
Sbjct: 238 TIPAGAKDPVTVKFANNPSQK 258
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVA 114
+ + + L ++ +DLR LFS GE+ S K+ K G GFV + DAE A
Sbjct: 86 SKTNLIINYLPQAMTQEDLRNLFSSIGELESCKLIRDKLTGQSLGYGFVNYVKAADAEKA 145
Query: 115 LQKLQGTAIGKQTVRLSWG 133
+ L G + ++T+++S+
Sbjct: 146 INSLNGLRMQQKTIKVSFA 164
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + SVK+ KG GFV N ++A +A+ L
Sbjct: 484 IFVYNLAPETDENILWQLFGPFGAVTSVKVIRDYQTQKCKGYGFVTMTNYEEAFIAVCSL 543
Query: 119 QGTAIGKQTVRLS 131
G +G + +++S
Sbjct: 544 NGYKLGDRVLQVS 556
>gi|387017380|gb|AFJ50808.1| Nucleolysin TIAR [Crotalus adamanteus]
Length = 388
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 139 ISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 198
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ N T++ G + S ++D+ +R+ FS FG+I+ + KG
Sbjct: 199 TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIVETRAFPVKGY 258
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F+ + A A+ + GT I V+ WG
Sbjct: 259 SFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 291
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 90 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMT 149
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 150 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 189
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS +++ KGY FVRF + A++ +NG+ +
Sbjct: 224 YCGGIASGLTDQLMRQTFSPFGQIVETRAFPVKGYSFVRFSTHESAAHAIVSVNGTTIEG 283
Query: 61 NNATIFVGALDSNVSDKDLREL-FSHFGE 88
+ + G + + KD +++ +S +G+
Sbjct: 284 HVVKCYWGKETPDTT-KDFQQVEYSQWGQ 311
>gi|167523433|ref|XP_001746053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775324|gb|EDQ88948.1| predicted protein [Monosiga brevicollis MX1]
Length = 635
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 20/117 (17%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + DEN ++A +N S NA ++
Sbjct: 218 KLMYDRATGKSLGYGFVEYEDENGATKAADALNEFQIENKRLKVSFARPSSSTITNANLY 277
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRKDAEVALQKL 118
+ L + ++++ L ++FS G+I+SV++ KG GFV+F K+AE A+Q+
Sbjct: 278 IKGLPTTINEQSLTDMFSSCGDIISVRVLYDRNGTPKGVGFVRFDQHKEAENAIQRF 334
>gi|171687054|ref|XP_001908468.1| hypothetical protein [Podospora anserina S mat+]
gi|170943488|emb|CAP69141.1| unnamed protein product [Podospora anserina S mat+]
Length = 481
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 37/158 (23%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGY--GFVRFGDENERSRAMIEMNG----- 55
+T +L++ F K+ D N KGY GFV + D RAM +NG
Sbjct: 99 VTEDVLRQIFETTGHVQNVKIIPDKNA---KGYNYGFVEYDDPGSAERAMQTLNGRRVHQ 155
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----- 95
+ SN+ IFVG L + V+D+ L + FS FG + ++
Sbjct: 156 AEIRVNWAYQSNNTNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 215
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+G GFV F +R +AE AL + G +G + +R +W
Sbjct: 216 GRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRCNW 253
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-----GFVQFANRKDAEV 113
+ N ++VG LD V++ LR++F G + +VKI K GFV++ + AE
Sbjct: 84 EPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGSAER 143
Query: 114 ALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
A+Q L G + + +R++W + N + D NH+
Sbjct: 144 AMQTLNGRRVHQAEIRVNWAYQSNNTN-KEDTSNHF 178
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++ + +L + FS A+V D TG ++GYGFV F D E +A+ M+G
Sbjct: 188 EVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDG 241
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ + +G F++ ++A +A+ +L G +
Sbjct: 305 TCYVGNLTPYTTQNDLVPLFQNFGFVVESRFQADRGFAFIKMDTHENAAMAICQLNGYNV 364
Query: 124 GKQTVRLS 131
+ ++ S
Sbjct: 365 NGRPLKCS 372
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|449673467|ref|XP_002159702.2| PREDICTED: nucleolysin TIAR-like [Hydra magnipapillata]
Length = 352
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 31 HTKGYGFVRFGDENERSRAMIEMNGSD--GKS------------------NNATIFVGAL 70
+ +GY FV+F D ++M +NG + GK + +I+ G L
Sbjct: 55 NPEGYCFVQFEDNISAMQSMNFLNGREFCGKKVKVNWATNSPNGMPKVIGTSVSIYCGNL 114
Query: 71 DSNVSDKDLRELFSHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQKLQGTAIG 124
D + ++DL+ F FGEIL++K+ PV K F+ F N+ DAE A++++ G +
Sbjct: 115 DDTIDEEDLKAAFEVFGEILNIKVVRDPVTNHSKNIAFISFTNKPDAEKAIREMHGAMLK 174
Query: 125 KQTVRLSWG-HNPGNKQWRGDHINHWNGA 152
+ ++ +W N K+ D+ + GA
Sbjct: 175 TRAIKTNWATRNQNQKKEEQDYDEVYKGA 203
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 30/132 (22%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS--------------------- 60
KV D T H+K F+ F ++ + +A+ EM+G+ K+
Sbjct: 137 KVVRDPVTNHSKNIAFISFTNKPDAEKAIREMHGAMLKTRAIKTNWATRNQNQKKEEQDY 196
Query: 61 ---------NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDA 111
+N T++ G + SN +++ +R F +G+I+ V+I K F++F +A
Sbjct: 197 DEVYKGASADNTTVYAGGIPSNCTEEQIRSHFDDYGKIVDVRIFAAKNYAFIKFDTHANA 256
Query: 112 EVALQKLQGTAI 123
A+ K GT +
Sbjct: 257 ATAICKSNGTEL 268
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 123 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 178
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 179 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 238
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 239 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 274
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 214 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 273
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 274 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 333
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 334 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 390
Query: 146 INH 148
+ +
Sbjct: 391 LTN 393
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 40/162 (24%)
Query: 7 SDITNSILQETFSRAK------VTIDSNTGHTKGYGFVRFGDENE-------------RS 47
SD+T ++L E FS A V D T + GY +V F +
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTSTSSSPLTVTE 79
Query: 48 RAMIEMN-----------------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
RA+ MN S KS +F+ LD ++ +K L + FS FG IL
Sbjct: 80 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 139
Query: 91 SVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
S K+ KG FV F ++ A+ A++K+ G + + V
Sbjct: 140 SCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 181
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A+ K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+E+F +G LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV F +DA+ A+ + G + + +
Sbjct: 226 DNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAI 261
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D N G +KG+GFV F + +A+ +MNG D GK
Sbjct: 201 DMDDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDDMNGKDMNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ ++V LD + D+ LR+ FS FG
Sbjct: 260 AIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A+ K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+E F +G LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
+G GFV F +DA+ A+ + G + + +
Sbjct: 226 DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 48/178 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E F + KV D + G ++G+GFV F + +A+ +MNG D N
Sbjct: 201 DMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKD--LN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
IFVG LD + D+ LR+ F+ F
Sbjct: 258 GKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
G I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 318 GSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGR 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A+ K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S +++D+ L+E+F +G LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV F +DA+ A+ ++ G + +++
Sbjct: 226 DNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSM 261
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D N G +KG+GFV F + +A+ EM G D GK
Sbjct: 201 DMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMYGKDMNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
S ++V LD + D+ LR+ F FG
Sbjct: 260 SMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A+ K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+E+F +G LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV F +DA+ A+ + G + + +
Sbjct: 226 DSGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAI 261
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 43/141 (30%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D ++G +KG+GFV F + +A+ +MNG D GK
Sbjct: 201 DMDDERLKEMFGKYGPALSVKVMTD-DSGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGK 259
Query: 60 S------------------------------NNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ ++V LD + D+ LR+ FS FG I
Sbjct: 260 AIYVGRAKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 319
Query: 90 LSVKIPV----GKGCGFVQFA 106
S K+ + KG GFV F+
Sbjct: 320 TSAKVMMEGGRSKGFGFVCFS 340
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D++L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D++L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKI 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.4 bits (98), Expect = 0.073, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D++L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|325089595|gb|EGC42905.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces capsulatus H88]
Length = 492
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 37/163 (22%)
Query: 9 ITNSILQETF------SRAKVTIDSNTGHTKG--YGFVRFGDENERSRAMIEMNG----- 55
+T IL++ F K+ D N+ KG YGFV + D RAM +NG
Sbjct: 103 VTEDILRQIFETTGHVQSVKIIPDKNS---KGLNYGFVEYDDPGAAERAMSTLNGRRVHQ 159
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKI 94
+ SN+ IFVG L + V+D+ L + FS FG + +K
Sbjct: 160 SEIRVNWAYQSNNNNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKT 219
Query: 95 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
+G GFV F R DAE AL + G +G + +R +W + G
Sbjct: 220 GRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAIRCNWANQKG 262
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRKDAEVAL 115
N +++G LD+ V++ LR++F G + SVKI G GFV++ + AE A+
Sbjct: 90 NKRALYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAM 149
Query: 116 QKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
L G + + +R++W + N + D NH++
Sbjct: 150 STLNGRRVHQSEIRVNWAYQSNNNN-KEDTSNHFH 183
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ + +G FV+ ++A +A+ +L G +
Sbjct: 309 TCYVGNLTPYTTQNDLIPLFQNFGYVVETRFQTDRGFAFVKMDTHENAAMAICQLSGYNV 368
Query: 124 GKQTVRLSWGHN-PGNKQWRG 143
+ ++ SWG + P Q+ G
Sbjct: 369 NGRPLKCSWGRDRPPTGQFEG 389
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGQ 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 40/148 (27%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S + D+ LRELFS +G +S+++
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQG 120
+G GFV F +DA+ A+ ++ G
Sbjct: 226 ENGKSRGFGFVSFERHEDAQKAVDEMNG 253
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
++ + L+E FS+ +V D N G ++G+GFV F + +A+ EMNG +
Sbjct: 201 EMDDEKLRELFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQKAVDEMNGKEMNGK 259
Query: 58 -----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
+ ++V LD + D+ LR+ FS FG
Sbjct: 260 LMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I Q VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGQPVRIMWSQ 88
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S ++ D L+ELFS +G+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV F +DA A++++ G I + V
Sbjct: 226 PSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMV 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F + A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E FS+ KV D +G +KG+GFV F + ++A+ EMNG D N
Sbjct: 201 DMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEMNGKD--IN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
+FVG LD + D+ LR+ FS F
Sbjct: 258 GKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ +A A+ ++ G +G + + ++ K+ R
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 374
Query: 143 GDHINH 148
H+ +
Sbjct: 375 KAHLTN 380
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|116191711|ref|XP_001221668.1| hypothetical protein CHGG_05573 [Chaetomium globosum CBS 148.51]
gi|88181486|gb|EAQ88954.1| hypothetical protein CHGG_05573 [Chaetomium globosum CBS 148.51]
Length = 413
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 26/131 (19%)
Query: 35 YGFVRFGDENERSRAMIEMNG--------------------SDGKSNNATIFVGALDSNV 74
YGFV + D RAM +NG + SN+ IFVG L + V
Sbjct: 71 YGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNSTNKEDTSNHFHIFVGDLSNEV 130
Query: 75 SDKDLRELFSHFGEI------LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
+D+ L + FS FG + +K +G GFV F R DAE AL + G +G + +
Sbjct: 131 NDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAI 190
Query: 129 RLSWGHNPGNK 139
R +W + G
Sbjct: 191 RCNWANQKGQP 201
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + +D+ LF +FG ++ + +G FV+ ++A +A+ +L G +
Sbjct: 246 TCYVGNLTPYTTQQDIVPLFQNFGFVVESRFQADRGFSFVKMDTHENAAMAICQLNGYNV 305
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 306 NGRPLKCSWG 315
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++ + +L + FS A+V D TG ++GYGFV F + + +A+ M+G
Sbjct: 129 EVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMDG 182
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGQ 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 40/148 (27%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S + D+ LRELFS +G +S+++
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQG 120
+G GFV F +DA+ A+ ++ G
Sbjct: 226 ENGKSRGFGFVSFERHEDAQKAVDEMNG 253
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
++ + L+E FS+ +V D N G ++G+GFV F + +A+ EMNG +
Sbjct: 201 EMDDEKLRELFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQKAVDEMNGKEMNGK 259
Query: 58 -----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
+ ++V LD + D+ LR+ FS FG
Sbjct: 260 LMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I Q VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGQPVRIMWSQ 88
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 47/184 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG +
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 58 ----GKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGE 88
G++ ++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ K+ R
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ---RKEERQA 376
Query: 145 HINH 148
H+ +
Sbjct: 377 HLTN 380
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.080, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.080, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKI 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|291386623|ref|XP_002709696.1| PREDICTED: TIA1 cytotoxic granule-associated RNA binding
protein-like [Oryctolagus cuniculus]
Length = 386
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 28 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 85
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 86 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRAK------VTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+ + G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKV 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S ++ D+ L+E+F +G+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTD 225
Query: 95 PVGK--GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P GK G GFV + +DA A++++ GT + +TV
Sbjct: 226 PSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTV 261
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
DIT ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTMNFDVVKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F + A+ A++K+ G + + V
Sbjct: 141 AFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E F + KV D +G ++G+GFV + + ++A+ EMNG++ N
Sbjct: 201 DMDDERLKEIFDKYGKTLSVKVMTDP-SGKSRGFGFVSYEKHEDANKAVEEMNGTE--LN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
T+FVG LD + D+ LR+ FS F
Sbjct: 258 GKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 318 GSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 374
Query: 143 GDHINH 148
H+ +
Sbjct: 375 KAHLTN 380
Score = 42.0 bits (97), Expect = 0.092, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + G A+++VG L ++++ L E FS G +LS+++ G +V F+
Sbjct: 1 MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + + + +R+ W
Sbjct: 61 QPADAERALDTMNFDVVKGKPIRIMWSQ 88
>gi|395507384|ref|XP_003758005.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Sarcophilus harrisii]
Length = 394
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 131 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 190
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 191 TYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 250
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 251 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 283
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 16 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGK 73
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 74 EVKVNWATTPSSQKKDTSSSTVVSTLRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 133
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 134 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 181
>gi|302904116|ref|XP_003049006.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729940|gb|EEU43293.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 474
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 33/161 (20%)
Query: 9 ITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
+T +L++ F K+ D N YGFV + D RAM +NG
Sbjct: 95 VTEDVLRQIFETTGHVQNVKIIPDKN-ARGYNYGFVEYDDPGAAERAMQTLNGRRVHQSE 153
Query: 56 -------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI------LSVKIPV 96
+ SN+ IFVG L + V+D+ L + FS FG + +K
Sbjct: 154 IRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGR 213
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137
+G GFV F +R DAE AL + G +G + +R +W + G
Sbjct: 214 SRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKG 254
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRKDAEVAL 115
N ++VG LD V++ LR++F G + +VKI G GFV++ + AE A+
Sbjct: 82 NKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAAERAM 141
Query: 116 QKLQGTAIGKQTVRLSWGH--NPGNKQWRGDHINHWNG 151
Q L G + + +R++W + N NK+ +H + + G
Sbjct: 142 QTLNGRRVHQSEIRVNWAYQSNTSNKEDTSNHFHIFVG 179
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119
S T +VG L + D+ LF +FG ++ + +G F++ ++A +A+ ++
Sbjct: 297 SWQTTCYVGNLTPYTTPNDVVPLFQNFGFVVESRFQADRGFAFIKMDTHENAAMAICQMN 356
Query: 120 GTAIGKQTVRLSWGHN 135
G + + ++ SWG +
Sbjct: 357 GYNVNGRPLKCSWGKD 372
>gi|221128187|ref|XP_002162583.1| PREDICTED: pre-mRNA-splicing factor RBM22-like [Hydra
magnipapillata]
Length = 470
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 45 ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQ 104
+R+ +M ++ KS T++VG LD + + DLR F +GEI SV + K CGF+
Sbjct: 215 KRAESMPKLESPSDKSIT-TLYVGGLDERIKEDDLRNFFYQYGEIRSVVVASNKSCGFIC 273
Query: 105 FANRKDAEVALQK-LQGTAIGKQTVRLSWGHN----PGNKQWRGDHINHW 149
+ +R+ AE+A ++ I + +++ WG + G K +GD + +
Sbjct: 274 YTSRQAAEMAAERSFNKVIIKGKRLKVLWGRSQEQRSGGKDEKGDRLKEY 323
>gi|195382900|ref|XP_002050166.1| GJ21992 [Drosophila virilis]
gi|194144963|gb|EDW61359.1| GJ21992 [Drosophila virilis]
Length = 910
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANR 108
G N +++G L+ +S++ L E+F +G + S+KI G+ CGFV + +R
Sbjct: 187 GDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSR 246
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
KDAE AL+ L G I +RL WG
Sbjct: 247 KDAERALRTLNGRYIMGYEMRLGWG 271
>gi|195027159|ref|XP_001986451.1| GH20523 [Drosophila grimshawi]
gi|193902451|gb|EDW01318.1| GH20523 [Drosophila grimshawi]
Length = 969
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANR 108
G N +++G L+ +S++ L E+F +G + S+KI G+ CGFV + +R
Sbjct: 213 GDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSR 272
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
KDAE AL+ L G I +RL WG
Sbjct: 273 KDAERALRTLNGRYIMGYEMRLGWG 297
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S ++ D L+ELFS +G+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV F +DA A++++ G I + V
Sbjct: 226 PSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMV 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F + A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E FS+ KV D +G +KG+GFV F + ++A+ EMNG D N
Sbjct: 201 DMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEMNGKD--IN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
+FVG LD + D+ LR+ FS F
Sbjct: 258 GKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ +A A+ ++ G +G + + ++ K+ R
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 374
Query: 143 GDHINH 148
H+ +
Sbjct: 375 KAHLTN 380
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|406606542|emb|CCH42041.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
[Wickerhamomyces ciferrii]
Length = 482
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I+ L+E FS+ K+ D N Y F+ F +E S A E+N
Sbjct: 113 ISEDQLREIFSQHGEIDNVKILFDKNK-QNFNYAFIEFQNELNASNAFQELNNKTLQNSV 171
Query: 56 -----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGK 98
+ S + IFVG L + + D+ L+ F+ + ++ + +
Sbjct: 172 ISINWAYQSQQAKNSSEHFNIFVGDLSTEIDDEQLKAAFNEYKSLVQAHVMWDMQSGRSR 231
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N++DAE+AL QG+ IG + VRL+W
Sbjct: 232 GYGFVSFTNQQDAELALTTKQGSQIGNRQVRLNWA 266
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK-----GCGFVQFANRKDAEVALQ 116
N ++VG LD +S+ LRE+FS GEI +VKI K F++F N +A A Q
Sbjct: 101 NKILYVGGLDKTISEDQLREIFSQHGEIDNVKILFDKNKQNFNYAFIEFQNELNASNAFQ 160
Query: 117 KLQGTAIGKQTVRLSWGHNPGNKQWRGDHIN 147
+L + + ++W + + +H N
Sbjct: 161 ELNNKTLQNSVISINWAYQSQQAKNSSEHFN 191
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTA 122
T+++G L + DL L +FG I+ +K K C F+++ + + A +A+ +L G
Sbjct: 391 TTVYLGNLTPYTTQNDLIPLVQNFGYIVDLKFHQEKNCAFIKYDSHERAALAIVQLSGLI 450
Query: 123 IGKQTVRLSWGHNPGNKQWRGDHINH 148
I + ++ WG D INH
Sbjct: 451 INGRPLKTGWGK---------DRINH 467
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGR 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A+ K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S +++D+ L+E+F +G LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV F +DA+ A+ ++ G + +++
Sbjct: 226 DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D N G +KG+GFV F + +A+ EMNG D GK
Sbjct: 201 DMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
S ++V LD + D+ LR+ F FG
Sbjct: 260 SMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
>gi|432853220|ref|XP_004067599.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Oryzias latipes]
Length = 335
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 23/139 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
AK+ D GH+ GYGFV F + N+ RA+ +NG S +A +
Sbjct: 60 AKLIRDKVAGHSLGYGFVNFVNPNDAERAISTLNGLRLQSKTIKVSFARPSSDTIKDANL 119
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
++ L + +DL ++F+ FG I++ ++ V +G F++F R +AE A++ L
Sbjct: 120 YISGLPRTLGQQDLEDMFASFGRIINSRVLVDQASGLSRGVAFIRFDKRSEAEDAVKHLN 179
Query: 120 GTAI--GKQTVRLSWGHNP 136
G G + + + + NP
Sbjct: 180 GHTPPGGSEPITVKFAVNP 198
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFA 106
M D ++N + V L +++ +LR LFS GE+ S K+ K G GFV F
Sbjct: 24 MEDDDAQTN---LIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFV 80
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWG 133
N DAE A+ L G + +T+++S+
Sbjct: 81 NPNDAERAISTLNGLRLQSKTIKVSFA 107
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IF+ L + + L ++F FG +++VK+ KG GFV N ++A +A+ L
Sbjct: 255 IFIYNLTQDADEGMLWQMFGPFGAVVNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIHSL 314
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ + G+K
Sbjct: 315 NGYRMGDKVLQVSFKTSKGHK 335
>gi|347964852|ref|XP_309157.5| AGAP000965-PA [Anopheles gambiae str. PEST]
gi|333466508|gb|EAA04954.5| AGAP000965-PA [Anopheles gambiae str. PEST]
Length = 340
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 23/141 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + + +A+ NG S A +
Sbjct: 56 CKLIRDKVTGQSLGYGFVNYHRPEDAEKAINTFNGLRLQNKTIKVSFARPSSDAIKGANL 115
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L +++ +DL LF+ +G+I++ +I + KG GF++F R +AE A+Q+L
Sbjct: 116 YVSGLSKSMTQQDLENLFNAYGQIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQLN 175
Query: 120 GTAI--GKQTVRLSWGHNPGN 138
GT + + + + +NP N
Sbjct: 176 GTTPKGASEPITVKFANNPSN 196
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + SVK+ KG GFV N +A VA+Q L
Sbjct: 257 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAVQSL 316
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 317 NGYTLGNRVLQVSFKTN 333
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L ++ ++++ LFS G++ S K+ K G GFV + +D
Sbjct: 24 DSKTN---LIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYHRPED 80
Query: 111 AEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHI 146
AE A+ G + +T+++S+ P + +G ++
Sbjct: 81 AEKAINTFNGLRLQNKTIKVSFAR-PSSDAIKGANL 115
>gi|123391676|ref|XP_001300116.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881103|gb|EAX87186.1| hypothetical protein TVAG_383730 [Trichomonas vaginalis G3]
Length = 180
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDA 111
G+ + +FVG D DLR F FG++++ KI KGCG VQFAN DA
Sbjct: 2 GEESETCLFVGNYPLEDQDIDLRVKFMRFGKVIAAKIFTRKGSFKSKGCGIVQFANHDDA 61
Query: 112 EVALQKLQGTAIGKQTVRLSWG 133
+ A+ +L GT QT+R+ WG
Sbjct: 62 QKAIDELNGTVYKGQTIRVKWG 83
>gi|402891170|ref|XP_003908827.1| PREDICTED: nucleolysin TIA-1 isoform p40, partial [Papio anubis]
Length = 377
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 183 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 242
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 243 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 275
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 8 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 65
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 66 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 125
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 126 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 173
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 56
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 57 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 116
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 117 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 151
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 92 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 150
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 151 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 210
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 211 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 266
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 74 VSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
+ +K L + FS FG ILS K+ KG GFV F ++ AE A++K+ G + + V
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 59
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGR 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A+ K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S +++D+ L+E+F +G LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV F +DA+ A+ ++ G + +++
Sbjct: 226 DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D N G +KG+GFV F + +A+ EMNG D GK
Sbjct: 201 DMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
S ++V LD + D+ LR+ F FG
Sbjct: 260 SMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
>gi|426223384|ref|XP_004005855.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Ovis aries]
Length = 375
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 181 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 241 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGK 74
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 75 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 134
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 37/166 (22%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------ 56
I N+ LQ+ F + +KV + S G +KGYGFV+F E + A+ ++NGS
Sbjct: 111 IDNAGLQDMFKKYGNILSSKVVM-SEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQ 169
Query: 57 -----------------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---- 95
D + N +++ LD +VS+ L+E FS FG+I+S+ I
Sbjct: 170 LYVGKFVKKSDRILPGPDARYTN--LYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNI 227
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+ KG GFV + N DA+ A++ + G+ +G + + ++ ++
Sbjct: 228 GMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVARAQKKAERE 273
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 22/135 (16%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS----------------DGK 59
E+ + +V DS+TG + YG+V F + RA+ N S D +
Sbjct: 36 ESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDAR 95
Query: 60 SNN-ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEV 113
N +FV L ++ + L+++F +G ILS K+ + KG GFVQF + + + V
Sbjct: 96 KNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNV 155
Query: 114 ALQKLQGTAIGKQTV 128
A++KL G+ +G + +
Sbjct: 156 AIEKLNGSTVGDKQL 170
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 43/156 (27%)
Query: 8 DITNSILQETFSR-----AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG---- 58
D++ + LQE FS + V N G +KG+GFV + + ++ RAM MNGS
Sbjct: 201 DVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKI 260
Query: 59 -----------------------------KSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
K + I+V +D +VSD++LR+ FS G I
Sbjct: 261 LYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGII 320
Query: 90 LSVKIP-----VGKGCGFVQFANRKDAEVALQKLQG 120
S KI + KG GFV F+ ++A A+ G
Sbjct: 321 TSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHG 356
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGKGC--GFVQFANRKDAEVALQ 116
A+++VG L NVSD L + FS F + SV++ GK G+V F + +DA A++
Sbjct: 12 ASLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIE 71
Query: 117 KLQGTAIGKQTVRLSW 132
+ + + +R+ W
Sbjct: 72 LKNNSTLNGKAMRVMW 87
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 34/153 (22%)
Query: 20 RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA-------------- 63
RA V +D TG +KG+G+V F +A+ EMNG DG++ N
Sbjct: 419 RASVQMDRQTGRSKGFGYVSFSTPEAAEKAIAEMNGKEIDGRAVNVNAATPKTPNPAGRA 478
Query: 64 ------------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQF 105
+FVG + N ++ L E F G+I+SV++P KG G+V+F
Sbjct: 479 KQFGDTVSAESKVLFVGNVSFNANEDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEF 538
Query: 106 ANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138
+ ++A+ A L G I + +RL + N
Sbjct: 539 TSVENAKSAFNALNGKDIAGRNIRLDFSQPRDN 571
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 115
N IFVG L NV D+ L+ F GE++ + + KG G+V F+ + AE A+
Sbjct: 390 NCNIFVGKLSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAI 449
Query: 116 QKLQGTAIGKQTVRLS 131
++ G I + V ++
Sbjct: 450 AEMNGKEIDGRAVNVN 465
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F ++ RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S ++ D L+ELFS +G+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV F +DA A++++ G I + V
Sbjct: 226 PSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMV 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F + A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 51/186 (27%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E FS+ KV D +G +KG+GFV F + ++A+ EMNG D N
Sbjct: 201 DMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEMNGKD--IN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
+FVG LD + D+ LR+ FS F
Sbjct: 258 GKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G I S K+ + KG GFV F++ +A A+ ++ G +G + + ++ K+ R
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQ---RKEER 374
Query: 143 GDHINH 148
H+ +
Sbjct: 375 KAHLTN 380
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|12851808|dbj|BAB29173.1| unnamed protein product [Mus musculus]
Length = 371
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L + K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMIQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKD 110
D K+N + V L N++ ++ R LF GEI S K+ K G GFV + + KD
Sbjct: 48 DSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 111 AEVALQKLQGTAIGKQTVRLSWGH 134
AE A+ L G + +T+++S+
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYAR 128
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 34 GYGFVRFGDEN-ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV 92
YG RF + +++ MN IFV L + + L +LF FG + +V
Sbjct: 258 AYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 317
Query: 93 KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNK 139
K+ KG GFV N +A +A+ L G +G + +++S+ N +K
Sbjct: 318 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 370
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 28/152 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D++ S L E F++ +V D T + GY +V +G + S+A+ +N
Sbjct: 36 DVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQALELLNFTLVKGK 95
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S KS A IF+ L+ ++ +K L + FS FG ILS ++ + KG
Sbjct: 96 PIRIMYSHRDPSIRKSGAANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKG 155
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
GFVQF + A++A++K+ G I + V ++
Sbjct: 156 YGFVQFEKEESAQIAIEKVNGMLINDRQVSVA 187
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 32/149 (21%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS------ 56
I N L +TFS +V +D + G++KGYGFV+F E A+ ++NG
Sbjct: 125 IDNKALHDTFSAFGTILSCRVVMD-DAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDRQ 183
Query: 57 --------------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVG 97
N ++V L +D+DLR++F+ FG I S +
Sbjct: 184 VSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKS 243
Query: 98 KGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
K GFV F N DA A++ L G I ++
Sbjct: 244 KCFGFVNFENVDDAANAVENLNGKLINEK 272
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 39/162 (24%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS---------------------- 56
S A V D++ G +K +GFV F + ++ + A+ +NG
Sbjct: 231 SSAVVMRDAD-GKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAEL 289
Query: 57 -----------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVGK--GC 100
+ K +++ +D ++ D+ LRELF+ FG + S K+ P G+ G
Sbjct: 290 KAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGS 349
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
GFV F+ ++A A+ + G +G + + ++ ++ R
Sbjct: 350 GFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRKEERRAR 391
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQK 117
+++VG LD +VS+ +L E+F+ G+++S+++ G +V + +DA AL+
Sbjct: 27 SLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQALEL 86
Query: 118 LQGTAIGKQTVRLSWGH 134
L T + + +R+ + H
Sbjct: 87 LNFTLVKGKPIRIMYSH 103
>gi|344283909|ref|XP_003413713.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Loxodonta
africana]
Length = 375
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 181 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 241 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGK 74
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 75 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 134
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
>gi|195455607|ref|XP_002074793.1| GK22959 [Drosophila willistoni]
gi|194170878|gb|EDW85779.1| GK22959 [Drosophila willistoni]
Length = 929
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---------PVGKGCGFVQFANR 108
G N +++G L+ +S++ L E+F +G + S+KI G+ CGFV + +R
Sbjct: 215 GDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSR 274
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWG 133
KDAE AL+ L G + +RL WG
Sbjct: 275 KDAERALRTLNGRYVMGYEMRLGWG 299
>gi|426223382|ref|XP_004005854.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Ovis aries]
gi|440907815|gb|ELR57912.1| Nucleolysin TIA-1 isoform p40 [Bos grunniens mutus]
Length = 386
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>gi|350291093|gb|EGZ72307.1| hypothetical protein NEUTE2DRAFT_144798 [Neurospora tetrasperma
FGSC 2509]
Length = 490
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 41/165 (24%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHT-------KGY--GFVRFGDENERSRAMIEM 53
+T +L++ F K+ D N G KGY GFV + D RAM +
Sbjct: 102 VTEDVLRQIFETTGHVQNVKIIPDKNVGKPGSEQPRQKGYNYGFVEYDDPGAAERAMQTL 161
Query: 54 NGS-----------DGKSNNAT---------IFVGALDSNVSDKDLRELFSHFGEILSVK 93
NG +SNN IFVG L + V+D+ L + FS FG + +
Sbjct: 162 NGRRVHQSEIRVNWAYQSNNQNKEDTSGHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEAR 221
Query: 94 IP------VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
+ +G GFV F +R DAE AL + G +G + +R +W
Sbjct: 222 VMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNW 266
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-------------PVGKG--CGFV 103
+ N ++VG LD V++ LR++F G + +VKI P KG GFV
Sbjct: 87 EPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNVGKPGSEQPRQKGYNYGFV 146
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
++ + AE A+Q L G + + +R++W + N Q + D H+
Sbjct: 147 EYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQ-SNNQNKEDTSGHF 191
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123
T +VG L + DL LF +FG ++ + +G F++ ++A +A+ +L G +
Sbjct: 318 TCYVGNLTPYTTQNDLVPLFQNFGYVVESRFQADRGFAFIKMDTHENAAMAICQLNGYQV 377
Query: 124 GKQTVRLSWG 133
+ ++ SWG
Sbjct: 378 NGRPLKCSWG 387
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 24/131 (18%)
Query: 26 DSNTGHTKGYGFVRFGDENERSRAMIEMN-----------------GSDGKSNNATIFVG 68
D T + GYG+V F + + +RA+ +N S KS A IF+
Sbjct: 67 DLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSLRKSGTANIFIK 126
Query: 69 ALDSNVSDKDLRELFSHFGEILSVKIP-----VGKGCGFVQFANRKDAEVALQKLQGTAI 123
LD + K L + FS FG ILS KI + KG GFVQF + + A+ A+ KL G I
Sbjct: 127 NLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNGMLI 186
Query: 124 GKQTVRLSWGH 134
+ V + GH
Sbjct: 187 NDKQVYV--GH 195
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 74/164 (45%), Gaps = 39/164 (23%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------- 55
T + A + D++ G ++ +GFV F + ++ ++A+ +NG
Sbjct: 237 TITSAVIMRDAD-GKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQ 295
Query: 56 ------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGK 98
S K +++ LD +SD+ L+E+F+ +G I S K+ +G+
Sbjct: 296 ELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIGR 355
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
G GFV F+ ++A AL ++ G I + + ++ +++ R
Sbjct: 356 GSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRAR 399
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 37/149 (24%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS K+ D+ +G +KGYGFV+F E A+ ++NG
Sbjct: 132 IDHKALHDTFSSFGLILSCKIATDA-SGLSKGYGFVQFDSEESAQNAIDKLNGMLINDKQ 190
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PV 96
S K NN ++V L + +D++L + F +G I S I
Sbjct: 191 VYVGHFLRKQDRENALSKTKFNN--VYVKNLSESTTDEELMKFFGEYGTITSAVIMRDAD 248
Query: 97 GKG-C-GFVQFANRKDAEVALQKLQGTAI 123
GK C GFV F N DA A++ L G +
Sbjct: 249 GKSRCFGFVNFENPDDAAKAVEGLNGKKV 277
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 54 NGSDGKSNN------ATIFVGALDSNVSDKDLRELFSHFGEI--------LSVKIPVGKG 99
NG NN +++VG L+ NV+D L +LF+ ++ L+ + +G G
Sbjct: 18 NGVANAPNNPNQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYG 77
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134
+V F+N +DA AL L T + + +R+ + H
Sbjct: 78 --YVNFSNPQDAARALDVLNFTPLNNRPIRIMYSH 110
>gi|281346697|gb|EFB22281.1| hypothetical protein PANDA_002889 [Ailuropoda melanoleuca]
Length = 377
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 183 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 242
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 243 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 275
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 8 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGK 65
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 66 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 125
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 126 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 173
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 11 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 70
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD+++ DK L + FS FG ILS K+ KG
Sbjct: 71 KPIRIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNILSCKVVCDENGSKG 130
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 131 YAFVHFETQEAADKAIEKMNGMLLNDRKV 159
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQ 116
A+++VG L S+V++ L E FS G +LS+++ G +V F DAE AL
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 117 KLQGTAIGKQTVRLSWGH 134
+ I + +R+ W
Sbjct: 62 TMNFDVIKGKPIRIMWSQ 79
>gi|301758210|ref|XP_002914948.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 2 [Ailuropoda
melanoleuca]
gi|410954993|ref|XP_003984143.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Felis catus]
Length = 375
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 181 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 241 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGK 74
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 75 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 134
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 125 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 180
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 181 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 240
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 241 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 275
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 216 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 274
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 275 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 334
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 335 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 390
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 114
KS IF+ LD ++ +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 110 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 169
Query: 115 LQKLQGTAIGKQTV 128
++K+ G + + V
Sbjct: 170 IEKMNGMLLNDRKV 183
>gi|188219593|ref|NP_071320.2| nucleolysin TIA-1 isoform p40 isoform 1 [Homo sapiens]
gi|114577932|ref|XP_001141475.1| PREDICTED: uncharacterized protein LOC459303 isoform 1 [Pan
troglodytes]
gi|397521826|ref|XP_003830987.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Pan paniscus]
gi|119620229|gb|EAW99823.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_a [Homo sapiens]
gi|410254976|gb|JAA15455.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410298558|gb|JAA27879.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410353837|gb|JAA43522.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 375
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 181 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 241 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 75 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 134
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKI 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKI 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|432853218|ref|XP_004067598.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Oryzias latipes]
Length = 356
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 23/139 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
AK+ D GH+ GYGFV F + N+ RA+ +NG S +A +
Sbjct: 81 AKLIRDKVAGHSLGYGFVNFVNPNDAERAISTLNGLRLQSKTIKVSFARPSSDTIKDANL 140
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
++ L + +DL ++F+ FG I++ ++ V +G F++F R +AE A++ L
Sbjct: 141 YISGLPRTLGQQDLEDMFASFGRIINSRVLVDQASGLSRGVAFIRFDKRSEAEDAVKHLN 200
Query: 120 GTAI--GKQTVRLSWGHNP 136
G G + + + + NP
Sbjct: 201 GHTPPGGSEPITVKFAVNP 219
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFA 106
M D ++N + V L +++ +LR LFS GE+ S K+ K G GFV F
Sbjct: 45 MEDDDAQTN---LIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFV 101
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWG 133
N DAE A+ L G + +T+++S+
Sbjct: 102 NPNDAERAISTLNGLRLQSKTIKVSFA 128
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IF+ L + + L ++F FG +++VK+ KG GFV N ++A +A+ L
Sbjct: 276 IFIYNLTQDADEGMLWQMFGPFGAVVNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIHSL 335
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ + G+K
Sbjct: 336 NGYRMGDKVLQVSFKTSKGHK 356
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKI 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 8 DITNSILQETFSRAKVTIDSN-----TGHTKGYGFVRFGDENERSRAMIEMNGSD----- 57
++ + L+E FS+ T+ +G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKI 260
Query: 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
+ +++ LD + D+ LR+ FS FG I
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 90 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R H
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Query: 146 INH 148
+ +
Sbjct: 378 LTN 380
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 37/166 (22%)
Query: 9 ITNSILQETFSR-----AKVTIDSNTGHTKGYGFVRFGDENERSRAMIE----------- 52
I N+ LQ+ F + + + S G +KGYGFV+F E E S+ IE
Sbjct: 111 IDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESE-ESSKVAIEKLNGYTVADKE 169
Query: 53 -------------MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP---- 95
+ G D + N +++ LD +VS+ L+E FS FG+I+S+ I
Sbjct: 170 LYVGKFVKKSDRILPGPDARYTN--LYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNN 227
Query: 96 -VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+ KG GFV + N DA+ A++ + G+ +G + + ++ ++
Sbjct: 228 GMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAERE 273
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 43/156 (27%)
Query: 8 DITNSILQETFSR-----AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG---- 58
D++ + LQE FS + V N G +KG+GFV + + ++ +AM MNGS
Sbjct: 201 DVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKI 260
Query: 59 -----------------------------KSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
K + I+V +D +VSD++LR+ FS G I
Sbjct: 261 LYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTI 320
Query: 90 LSVKIP-----VGKGCGFVQFANRKDAEVALQKLQG 120
S KI + KG GFV F+ ++A A+ G
Sbjct: 321 TSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHG 356
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 28/150 (18%)
Query: 7 SDITNSILQETFSRAK------VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--- 57
D+++S L + FS K V DS+TG + YG++ F + RA+ N S
Sbjct: 21 PDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIELKNNSTLNG 80
Query: 58 --------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GK 98
KS +FV L ++ + L+++F +G ILS K+ K
Sbjct: 81 KAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSK 140
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
G GFVQF + + ++VA++KL G + + +
Sbjct: 141 GYGFVQFESEESSKVAIEKLNGYTVADKEL 170
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI----PVGKGC--GFVQFANRKDAEVALQ 116
A+++VG L +VSD L + FS F + SV++ GK G++ F + +DA A++
Sbjct: 12 ASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIE 71
Query: 117 KLQGTAIGKQTVRLSW 132
+ + + +R+ W
Sbjct: 72 LKNNSTLNGKAMRVMW 87
>gi|344283907|ref|XP_003413712.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Loxodonta
africana]
Length = 386
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>gi|322798581|gb|EFZ20185.1| hypothetical protein SINV_01390 [Solenopsis invicta]
Length = 523
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 23/140 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D +G + GYGFV + + +A+ +NG S A ++
Sbjct: 57 KLIRDKLSGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLY 116
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKLQG 120
V L N++ +DL LFS +G I++ +I + KG GF++F R +AE A+Q+L G
Sbjct: 117 VSGLPKNMAQQDLENLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRVEAERAIQELNG 176
Query: 121 TAI--GKQTVRLSWGHNPGN 138
T + + + + +NP N
Sbjct: 177 TIPKGSSEPITVKFANNPSN 196
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAE 112
+ + + V L +++ ++R LFS GE+ S K+ K G GFV + +DAE
Sbjct: 23 EESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRPEDAE 82
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHI 146
A+ L G + +T+++S+ P ++ +G ++
Sbjct: 83 KAINTLNGLRLQNKTIKVSYAR-PSSEAIKGANL 115
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + SVK+ KG GFV N ++A VA+Q L
Sbjct: 254 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYEEAVVAIQSL 313
Query: 119 QGTAIGKQTVR 129
G +G + ++
Sbjct: 314 NGYTLGNRVLQ 324
Score = 37.4 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67
+++ D+ TG +KG GF+RF E RA+ E+NG+ K ++ I V
Sbjct: 142 SRILCDNITGLSKGVGFIRFDQRVEAERAIQELNGTIPKGSSEPITV 188
>gi|27924240|gb|AAH45086.1| Tia1 protein, partial [Xenopus laevis]
Length = 427
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 160 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 219
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ S N T++ G + + +S++ +R+ F
Sbjct: 220 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSSKNCTVYCGGIGAGLSEQLMRQTF 279
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FG+IL +++ KG F++F+ A A+ + GT I V+ WG
Sbjct: 280 GVFGQILEIRVFPEKGYSFIRFSTHDSAAHAIVSVNGTTIEGHVVKCYWG 329
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
SN+ +FVG L ++ +D++ F+ FG+I ++ KG GFV F N+ DAE
Sbjct: 148 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 207
Query: 114 ALQKLQGTAIGKQTVRLSWG 133
A+ + G +G + +R +W
Sbjct: 208 AIVHMGGQWLGGRQIRTNWA 227
>gi|296223620|ref|XP_002757701.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Callithrix
jacchus]
gi|403260488|ref|XP_003922703.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 375
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 181 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 241 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 75 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 134
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
>gi|380816028|gb|AFE79888.1| nucleolysin TIA-1 isoform p40 isoform 1 [Macaca mulatta]
gi|383421175|gb|AFH33801.1| nucleolysin TIA-1 isoform p40 isoform 1 [Macaca mulatta]
Length = 375
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 181 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 241 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 33/157 (21%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG GK
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 60 -----------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------ 96
SN+ +FVG L ++ +D++ F+ FG I ++
Sbjct: 75 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 134
Query: 97 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 PDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 RPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + AE A++K+ G + + V
Sbjct: 140 YGFVHFETHEAAERAIEKMNGMLLNDRKV 168
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 40/168 (23%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+E+F +G LS+++
Sbjct: 166 RKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
KG GFV F +DA+ A+ ++ G + + V + G +Q
Sbjct: 226 DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQ 273
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 24/146 (16%)
Query: 5 QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAM-----IEMNG---- 55
Q+ D+ N + Q R + D T + GYG+V F + + ++A+ +NG
Sbjct: 39 QLYDLFNQVAQVVSVR--ICRDVATQQSLGYGYVNFSNARDAAKAIDVLNFTPLNGKTIR 96
Query: 56 --------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGF 102
S KS A +F+ LD + K L + FS FG ILS KI KG GF
Sbjct: 97 IMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGF 156
Query: 103 VQFANRKDAEVALQKLQGTAIGKQTV 128
VQF + + A+ A+ KL G I + V
Sbjct: 157 VQFESEESAQNAIDKLNGMLINDKQV 182
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 38/151 (25%)
Query: 30 GHTKGYGFVRFGDENERSRAMIEMNGS--DGKS--------------------------- 60
G +KG+GFV F + + ++A+ +NG DGK
Sbjct: 240 GKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKET 299
Query: 61 ----NNATIFVGALDSNVSDKDLRELFSHFGEILSVKI---PVG--KGCGFVQFANRKDA 111
+ +++ LD +V D++LRELFS FG I S K+ P G +G GFV F+ + A
Sbjct: 300 VDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGA 359
Query: 112 EVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
AL ++ G + + + ++ +++ R
Sbjct: 360 SWALGEMNGKMVAGKPLYVALAQRKEDRRAR 390
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFAN 107
+G++ +++VG LD +V+D L +LF+ +++SV+I G G+V F+N
Sbjct: 15 SGANPSMTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSN 74
Query: 108 RKDAEVALQKLQGTAIGKQTVRLSW 132
+DA A+ L T + +T+R+ +
Sbjct: 75 ARDAAKAIDVLNFTPLNGKTIRIMY 99
>gi|188219591|ref|NP_071505.2| nucleolysin TIA-1 isoform p40 isoform 2 [Homo sapiens]
gi|114577930|ref|XP_001141557.1| PREDICTED: uncharacterized protein LOC459303 isoform 2 [Pan
troglodytes]
gi|397521824|ref|XP_003830986.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Pan paniscus]
gi|206729905|sp|P31483.3|TIA1_HUMAN RecName: Full=Nucleolysin TIA-1 isoform p40; AltName:
Full=RNA-binding protein TIA-1; AltName:
Full=T-cell-restricted intracellular antigen-1;
Short=TIA-1; AltName: Full=p40-TIA-1
gi|62702267|gb|AAX93193.1| unknown [Homo sapiens]
gi|119620230|gb|EAW99824.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_b [Homo sapiens]
gi|261861076|dbj|BAI47060.1| TIA1 cytotoxic granule-associated RNA binding protein [synthetic
construct]
gi|410226260|gb|JAA10349.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410254978|gb|JAA15456.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410298556|gb|JAA27878.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410353839|gb|JAA43523.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 386
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>gi|49658982|emb|CAE01482.1| HUR [Tetraodon nigroviridis]
Length = 325
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 23/139 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN---------------ATI 65
AK+ D GH+ GYGFV + + ++ RA+ +NG +S N A +
Sbjct: 48 AKLIRDKVAGHSLGYGFVNYVNPSDAERAISTLNGLRLQSKNIKVSYARPSSDTIKDANL 107
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
++ L +++ KD+ ++FS FG I++ ++ V +G F++F R +AE A+ L
Sbjct: 108 YISGLPKSMTQKDVEDMFSQFGRIINSRVLVDQATGVSRGVAFIRFDKRAEAEDAINNLN 167
Query: 120 GTAIGK--QTVRLSWGHNP 136
G + + + + + NP
Sbjct: 168 GQKPSEAIEPITVKFAANP 186
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFA 106
M G +GK + V L N+S ++LR LFS GE+ S K+ K G GFV +
Sbjct: 9 MGGEEGKDAKTNLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV 68
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWG 133
N DAE A+ L G + + +++S+
Sbjct: 69 NPSDAERAISTLNGLRLQSKNIKVSYA 95
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 60 SNNA-TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAE 112
SNN IF+ L + L ++F FG + +VK+ KG GFV +N +DA
Sbjct: 239 SNNGWCIFIYNLGQEADETILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMSNYEDAA 298
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNK 139
+A+ L G +G + +++S+ + G+K
Sbjct: 299 MAIASLNGYRLGDKILQVSFKTSKGHK 325
>gi|84579137|dbj|BAE73002.1| hypothetical protein [Macaca fascicularis]
Length = 385
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>gi|73969892|ref|XP_866571.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 9 [Canis lupus
familiaris]
gi|301758208|ref|XP_002914947.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1 [Ailuropoda
melanoleuca]
gi|410954995|ref|XP_003984144.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Felis catus]
gi|431912606|gb|ELK14624.1| Nucleolysin TIA-1 isoform p40 [Pteropus alecto]
Length = 386
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,549,957,834
Number of Sequences: 23463169
Number of extensions: 100964122
Number of successful extensions: 326729
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4899
Number of HSP's successfully gapped in prelim test: 15049
Number of HSP's that attempted gapping in prelim test: 277120
Number of HSP's gapped (non-prelim): 49076
length of query: 155
length of database: 8,064,228,071
effective HSP length: 117
effective length of query: 38
effective length of database: 9,614,004,594
effective search space: 365332174572
effective search space used: 365332174572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)