BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038175
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/192 (52%), Positives = 122/192 (63%), Gaps = 42/192 (21%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+++++L ETFS AKV +D+NTG +KGYGFVRFGDENER++AM EMNG
Sbjct: 207 APDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKC 266
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
S+G + N TIFVG LDS+V+D+DL++ F
Sbjct: 267 SSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPF 326
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRG 143
S FGEI+SVKIPVGKGCGFVQF NR +AE AL+KL GT IGKQTVRLSWG NP NKQ R
Sbjct: 327 SEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRD 386
Query: 144 DHINHWNGAHYG 155
+ N W +YG
Sbjct: 387 KYGNQWVDPYYG 398
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 30/139 (21%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------DG 58
KV + + G ++GYGFV F + + + E NG+ +
Sbjct: 135 KVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLEN 194
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKDA 111
+ +IFVG L +VSD L E FS + + + K+ + KG GFV+F + +
Sbjct: 195 NGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENER 254
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 255 TKAMTEMNGVKCSSRAMRI 273
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/197 (51%), Positives = 123/197 (62%), Gaps = 50/197 (25%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
D+++++L ETF+ AKV IDSNTG +KGYGFVRFGDENERSRAM EMNG
Sbjct: 221 APDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFC 280
Query: 56 ---------------------------------------SDGKSNNATIFVGALDSNVSD 76
SDG+SNN+TIFVG LD++V++
Sbjct: 281 SSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTE 340
Query: 77 KDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136
+DL + FS FGE++SVKIPVGKGCGFVQFANR+ AE A+ L GT IGK TVRLSWG +P
Sbjct: 341 EDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP 400
Query: 137 GNKQWRGDHINHWNGAH 153
NKQWR D N WNG +
Sbjct: 401 -NKQWRSDSGNQWNGGY 416
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANR 108
G G + T++VG L + + L FSH E+ SVK+ K G GFV+F +R
Sbjct: 111 GGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSR 170
Query: 109 KDAEVALQKLQGTAI--GKQTVRLSW 132
AE ALQ G + +Q RL+W
Sbjct: 171 SAAEEALQSFSGVTMPNAEQPFRLNW 196
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 30/142 (21%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGKSN 61
S KV + T ++GYGFV F + A+ +G S G+
Sbjct: 146 SSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKR 205
Query: 62 ------NATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANR 108
+ +IFVG L +VSD L E F+ + + K+ + KG GFV+F +
Sbjct: 206 ASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDE 265
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ A+ ++ G + +R+
Sbjct: 266 NERSRAMTEMNGAFCSSRQMRV 287
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 121/200 (60%), Gaps = 55/200 (27%)
Query: 8 DITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
D+T+ +L ETFS AKV IDSNTG +KGYGFVRFGDENERSRA+ EMNG
Sbjct: 212 DVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSN 271
Query: 56 ------------------------------------------SDGKSNNATIFVGALDSN 73
SDG+S NATIFVG +D +
Sbjct: 272 RQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPD 331
Query: 74 VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
V D+DLR+ FS FGE++SVKIPVGKGCGFVQFA+RK AE A++ L GT IGK TVRLSWG
Sbjct: 332 VIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWG 391
Query: 134 HNPGNKQWRGDHINHWNGAH 153
+P NKQWRGD WNG +
Sbjct: 392 RSP-NKQWRGDSGQQWNGGY 410
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T++VG L + + L FSH GE+ SVK+ K G GFV+F +R AE LQ
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 118 LQGTAI--GKQTVRLSW 132
G+ + Q R++W
Sbjct: 169 YSGSVMPNSDQPFRINW 185
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 30/142 (21%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA--------------- 63
S KV + T ++GYGFV F + +GS +++
Sbjct: 135 SSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKR 194
Query: 64 --------TIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANR 108
++FVG L +V+D L E FS + + S K+ + KG GFV+F +
Sbjct: 195 AVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
Query: 109 KDAEVALQKLQGTAIGKQTVRL 130
+ AL ++ G + +R+
Sbjct: 255 NERSRALTEMNGAYCSNRQMRV 276
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 189 bits (479), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 120/191 (62%), Gaps = 42/191 (21%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+++++L ETFS AKV +D+NTG +KGYGFVRFGDENER++AM EMNG
Sbjct: 206 PDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCS 265
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
+G N TIFVG LDS+V+D+DL++ F+
Sbjct: 266 SRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFN 325
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
FGEI+SVKIPVGKGCGFVQF NR +AE AL+KL GT IGKQTVRLSWG NP NKQ R
Sbjct: 326 EFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDK 385
Query: 145 HINHWNGAHYG 155
+ N W +YG
Sbjct: 386 YGNQWVDPYYG 396
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 30/140 (21%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------------D 57
KV + N G ++GYGFV F + + + E NG+ +
Sbjct: 132 VKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLE 191
Query: 58 GKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANRKD 110
+ +IFVG L +VSD L E FS + + + K+ + KG GFV+F + +
Sbjct: 192 NNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENE 251
Query: 111 AEVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 252 RTKAMTEMNGVKCSSRAMRI 271
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 186 bits (473), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 123/203 (60%), Gaps = 53/203 (26%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
SD+T+++L++TF+ AKV +D+NTGH+KGYGFVRFGDE+ERSRAM EMNG
Sbjct: 185 ASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYC 244
Query: 56 -------------------------------------------SDGKSNNATIFVGALDS 72
SDG S+N TIFVG LDS
Sbjct: 245 SSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDS 304
Query: 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132
V+D++LR+ F+ FGE++SVKIP GKGCGFVQF++R A+ A+QKL G IGKQ VRLSW
Sbjct: 305 EVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSW 364
Query: 133 GHNPGNKQWRGDHINHWNGAHYG 155
G +P NKQ R D + WNG + G
Sbjct: 365 GRSPANKQMRTDSGSQWNGGYNG 387
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 35/157 (22%)
Query: 9 ITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
+ S L FS+A K+ + TG ++ YGFV F + + NG
Sbjct: 95 MDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTE 154
Query: 56 ----------SDGKSNNAT-----IFVGALDSNVSDKDLRELF-SHFGEILSVKIPV--- 96
S G+ T IFVG L S+V+D LR+ F S + + K+ V
Sbjct: 155 QPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDAN 214
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
KG GFV+F + + A+ ++ G + +R+
Sbjct: 215 TGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRI 251
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC------GFVQFANRKDAEVA 114
+N TI++G L + + L FS GE++SVKI K GFV+F AE
Sbjct: 82 DNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKV 141
Query: 115 LQKLQGTAIG--KQTVRLSW-GHNPGNKQ 140
LQ GT + +Q RL+W G + G K+
Sbjct: 142 LQSYNGTMMPNTEQPFRLNWAGFSTGEKR 170
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 103/190 (54%), Gaps = 45/190 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
++T+ +L +TF AKV +D TG +KGYGFVRF DENE+ RAM EMNG
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYC 221
Query: 57 --------------------------------DGKSNNATIFVGALDSNVSDKDLRELFS 84
D NN TIFVG LD+NV+D +L+ +F
Sbjct: 222 STRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFG 281
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
FGE+L VKIP GK CGFVQ+AN+ AE AL L GT +G Q++RLSWG +P NKQ
Sbjct: 282 QFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSP-NKQ---S 337
Query: 145 HINHWNGAHY 154
WNG Y
Sbjct: 338 DQAQWNGGGY 347
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 30/147 (20%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA--------------- 63
+ AKV + TG ++GYGF+ F + R + NG+ S
Sbjct: 87 TSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKR 146
Query: 64 --------TIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV------GKGCGFVQFANR 108
TIFVG L V+D L + F + +G + K+ + KG GFV+FA+
Sbjct: 147 FQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHN 135
+ A+ ++ G + +R+ N
Sbjct: 207 NEQMRAMTEMNGQYCSTRPMRIGPAAN 233
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 104/189 (55%), Gaps = 42/189 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ IL ETF AKV ID TG TKGYGFVRF DE+E+ RAM EMNG
Sbjct: 163 AADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPC 222
Query: 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84
+D NN T+FVG LD++V+D L+ +FS
Sbjct: 223 STRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFS 282
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
+GEI+ VKIP GK CGFVQF+ + AE AL+ L G +G TVRLSWG +P NKQ GD
Sbjct: 283 QYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ-SGD 341
Query: 145 HINHWNGAH 153
+ G +
Sbjct: 342 PSQFYYGGY 350
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------G 58
AKV + TG +GYGF+ F R + N +
Sbjct: 91 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD 150
Query: 59 KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPVG------KGCGFVQFANRKDA 111
S + TIFVG L ++V+D L E F + + + K+ + KG GFV+F++ +
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 112 EVALQKLQGTAIGKQTVRL 130
A+ ++ G + +R+
Sbjct: 211 IRAMTEMNGVPCSTRPMRI 229
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L + + L F+H GE++S K+ K G GF++FA+ AE LQ
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 118 LQGTAIGK---QTVRLSWG 133
I Q RL+W
Sbjct: 123 FNNAPIPSFPDQLFRLNWA 141
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 99/180 (55%), Gaps = 40/180 (22%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-- 56
D+T+ +L ETF AKV D TG +KGYGFVRF DE+E+ RAM EMNG
Sbjct: 181 APDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYC 240
Query: 57 -------------------------------DGKSNNATIFVGALDSNVSDKDLRELFSH 85
+ N TIFVGA+D +V++ DL+ +F
Sbjct: 241 SSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQ 300
Query: 86 FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDH 145
FGE++ VKIP GK CGFVQ+ANR AE AL L GT +G Q++RLSWG +P NKQ + D
Sbjct: 301 FGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQ 360
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 29/144 (20%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA----------------- 63
AKV + G+++GYGF+ F + R + NG+ S+
Sbjct: 109 AKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQA 168
Query: 64 -----TIFVGALDSNVSDKDLRELF-SHFGEILSVKIP------VGKGCGFVQFANRKDA 111
T+FVG L +V+D L E F + + + K+ KG GFV+FA+ +
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Query: 112 EVALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R N
Sbjct: 229 IRAMTEMNGQYCSSRPMRTGPAAN 252
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 100/176 (56%), Gaps = 41/176 (23%)
Query: 6 VSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--- 55
+D+T+ ILQETF AKV D TG +KGYGFV+F DE+E+ RAM EMNG
Sbjct: 184 AADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLC 243
Query: 56 -----------------------------SDGKS--NNATIFVGALDSNVSDKDLRELFS 84
+ G+S NN TIFVG LD V+++ LR++FS
Sbjct: 244 STRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFS 303
Query: 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
+GE++ VKI GK CGFVQF R AE AL L GT +G Q++RLSWG +P +KQ
Sbjct: 304 PYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQ 359
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 28/143 (19%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-------------------DGKSN 61
AKV + TG ++GYGF+ F + NG+ + + +
Sbjct: 113 AKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDD 172
Query: 62 NA--TIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFVQFANRKDAE 112
+A TIFVG L ++V+D L+E F S + + K+ KG GFV+FA+ +
Sbjct: 173 SAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQL 232
Query: 113 VALQKLQGTAIGKQTVRLSWGHN 135
A+ ++ G + +R+ N
Sbjct: 233 RAMTEMNGVLCSTRPMRIGPAAN 255
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 49 AMIEMNGSDGKSNNA----TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------ 98
AM N + + N ++++G L + + L F H GE++S K+ K
Sbjct: 66 AMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSE 125
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIG--KQTVRLSWG 133
G GF++F + AE LQ GT + +Q R++W
Sbjct: 126 GYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWA 162
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 99/202 (49%), Gaps = 59/202 (29%)
Query: 7 SDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---- 55
D+T+ +LQETF AKV D +TG +KGYGFV+F +E+ER+RAM EMNG
Sbjct: 125 PDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCS 184
Query: 56 ---------------------------------------------SDGKSNNATIFVGAL 70
+ TI V L
Sbjct: 185 TRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANL 244
Query: 71 DSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
D NV++++L++ FS GE++ VKIP KG G+VQF R AE A+Q++QG IG+Q VR+
Sbjct: 245 DQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRI 304
Query: 131 SWGHNPGNKQW--RGDHINHWN 150
SW NPG W + D N WN
Sbjct: 305 SWSKNPGQDGWVTQADP-NQWN 325
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 28/138 (20%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNAT----------------- 64
KV + TG +GYGF+ F R + NG+ T
Sbjct: 54 KVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAG 113
Query: 65 ----IFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEV 113
IFVG L +V+D L+E F H+ + K+ KG GFV+FA +
Sbjct: 114 PDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNR 173
Query: 114 ALQKLQGTAIGKQTVRLS 131
A+ ++ G + +R+S
Sbjct: 174 AMAEMNGLYCSTRPMRIS 191
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQK 117
T+++G L V + L FS GE++SVK+ K G GF++F + AE LQ
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 118 LQGTAIG--KQTVRLSWG 133
GT + + T RL+W
Sbjct: 85 YNGTQMPGTELTFRLNWA 102
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 114 bits (284), Expect = 3e-25, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 82/160 (51%), Gaps = 45/160 (28%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------------- 57
AK+ D T ++GYGFVRF DEN++ A+ EM G
Sbjct: 216 AKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPV 275
Query: 58 ----------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
+ N+T+FVG L VS+++L+ LF +FGEI+ VKIP
Sbjct: 276 NVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
GKGCGFVQF NR+ AE+A+ +LQG +G +RLSWG N
Sbjct: 336 PGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 35/157 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAM------------ 50
+T + +Q+ ++ + K+ + TG GY FV F +E S AM
Sbjct: 104 VTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNH 163
Query: 51 -IEMNGSDG---------KSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKI----- 94
++N + G K++ +IFVG L NV++ D+ LF S + S KI
Sbjct: 164 LFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQ 223
Query: 95 -PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130
V +G GFV+F + D + AL ++QG G + +R+
Sbjct: 224 TNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 108 bits (271), Expect = 1e-23, Method: Composition-based stats.
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 43/160 (26%)
Query: 19 SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55
+ AK+ +D TG ++ YGFVRF E E+ A++ M G
Sbjct: 210 TSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAA 269
Query: 56 -----------SDGKSN---------NATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
S+ + N N T+FVG L SN+S+KDL+ F FG IL++KIP
Sbjct: 270 DSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIP 329
Query: 96 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
GKGCGFVQ++ + AE A+ +QG +G +RL+WGHN
Sbjct: 330 FGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
Score = 33.1 bits (74), Expect = 0.73, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 51 IEMNGSDGKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV------GKGCGFV 103
I+ N + +IFVG L D DL F S + S KI V + GFV
Sbjct: 170 IQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFV 229
Query: 104 QFANRKDAEVALQKLQGTAIGKQTVRLS 131
+F++ K+ + AL +QG + +R+S
Sbjct: 230 RFSSEKEQQHALMHMQGYLCQGRPLRIS 257
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG 120
NN T+F+G L S V++ +LR F FG I+ VKIPVGK CGFVQ+ +R AE A+ +QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQG 370
Query: 121 TAIGKQTVRLSWGH 134
I VRLSWG
Sbjct: 371 FPIANSRVRLSWGR 384
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 61 NNATIFVGALDSNVSDKDLRELF-------SHFGEILSVKIPVGKGCGFVQFANRKDAEV 113
NN +IFVG L NV++ L ELF SH + + KG GFV+F N + ++
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 114 ALQKLQGTAIGKQTVRL 130
AL ++QG + + +++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 8 DITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
++T S L E F S AK+ D TG +KGYGFV+F + +E+ A+ EM G
Sbjct: 173 NVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG 227
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 83.6 bits (205), Expect = 4e-16, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 54/93 (58%)
Query: 41 GDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
G N R + N + N T+FVG L ++ LR LF FG IL+V+IP GK C
Sbjct: 338 GISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNC 397
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
GFV+F R DAE ++Q LQG +G +RLSWG
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 12 SILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
S+ Q F K V D TG ++ +GFVRFGDE+ER RA+IEM+G
Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 34/146 (23%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNA--------------- 63
A+V + T ++GYG+V F +++ +A+ EM G DG+ N
Sbjct: 197 ARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK 256
Query: 64 -----------TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFA 106
T+F+G L N + ELF+ GE++SV+IP KG G+VQF+
Sbjct: 257 KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFS 316
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSW 132
N +DA+ AL LQG I + VRL +
Sbjct: 317 NMEDAKKALDALQGEYIDNRPVRLDF 342
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 116
ATIFVG L ++ D+ L++ F H G ++ ++ +G G+V F N+ AE A+Q
Sbjct: 168 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 227
Query: 117 KLQGTAI 123
++QG I
Sbjct: 228 EMQGKEI 234
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
S NN T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F++ + A A+ + GT I V+ WG
Sbjct: 252 SFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
YC S +T ++++TFS ++ KGY FVRF + A++ +NG+
Sbjct: 217 YCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGT 272
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-----CGFVQFANRKDAEVALQKL 118
T++VG L +V++ + +LFS G + K+ + C FV+F + A AL +
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAM 66
Query: 119 QGTAIGKQTVRLSWGHNPGNKQ 140
G I + V+++W P +++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQK 88
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 189 QKPLGAAEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLR 80
+++ +D TG ++G GF+RF E A+ +NG I V +N S K +
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV-KFANNPSQKTGQ 212
Query: 81 ELFSHF 86
L +H
Sbjct: 213 ALLTHL 218
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 128
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQG 120
V L +S K++ +LFS +G I++ +I V +G GF++F R +AE A++ L G
Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 121 TAI--GKQTVRLSWGHNPGNK 139
+ + + + +NP K
Sbjct: 189 QKPLGAAEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 119 QGTAIGKQTVRLSW 132
G +G++ +++S+
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLR 80
+++ +D TG ++G GF+RF E A+ +NG I V +N S K +
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV-KFANNPSQKTGQ 212
Query: 81 ELFSHF 86
L +H
Sbjct: 213 ALLTHL 218
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 106 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 165
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 166 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 225
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 226 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 275
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 8 DITNSILQETFSRAKVTIDSN--TGHTK--GYGFVRFGDENERSRAMIEMNGSD--GK-- 59
D+T ++ + FS+ T HT Y FV F + + + A+ MNG GK
Sbjct: 19 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 78
Query: 60 ---------------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GK 98
SN+ +FVG L ++ +D++ F+ FG+I ++ K
Sbjct: 79 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 138
Query: 99 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
G GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 139 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANR 108
M DG+ T++VG L +V++ + +LFS G S K+ FV+F
Sbjct: 1 MMEDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 58
Query: 109 KDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
+DA AL + G I + V+++W P ++ + D NH++
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 98
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YCQ--VSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 208 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 267
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 268 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 295
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 43/170 (25%)
Query: 7 SDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----- 55
+IT ++ F S A+V D TG +KGYGFV F ++ + A++ M G
Sbjct: 123 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 56 --------------------------------SDGKSNNATIFVGALDSNVSDKDLRELF 83
+ N T++ G + S ++D+ +R+ F
Sbjct: 183 RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 84 SHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
S FG+I+ +++ KG FV+F+ + A A+ + GT I V+ WG
Sbjct: 243 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 292
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--- 96
G E + + A + SN+ +FVG L ++ +D++ F+ FG+I ++
Sbjct: 91 LGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMA 150
Query: 97 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
KG GFV F N+ DAE A+ + G +G + +R +W
Sbjct: 151 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
YC S +T+ ++++TFS ++ KGY FVRF + A++ +NG+ +
Sbjct: 225 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 284
Query: 61 NNATIFVGALDSNVSDKDLRELFSHFGE 88
+ + G +++ + +S +G+
Sbjct: 285 HVVKCYWGKESPDMTKNFQQVDYSQWGQ 312
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 25/119 (21%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI----P----VGKGCGF-- 102
M DG+ T++VG L +V++ + +LFS G S K+ P V GF
Sbjct: 1 MMEDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSV 58
Query: 103 -----------VQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGDHINHWN 150
V+F +DA AL + G I + V+++W P ++ + D NH++
Sbjct: 59 LQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFH 115
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
++T+S L + F + +V D T + GYG+V F + + +RA+ E+N
Sbjct: 46 NVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGK 105
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
S +S IF+ LD ++ K L + FS FG I+S K+ V KG
Sbjct: 106 PIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKG 165
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFVQ+AN + A+ A++KL G + + V
Sbjct: 166 YGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 33/144 (22%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I + L +TFS KV +DS +G +KGYGFV++ +E +A+ ++NG
Sbjct: 135 IDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ 193
Query: 56 --------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PV 96
+ K+ ++V L + +D DL+ F +G+I S +
Sbjct: 194 VYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK 253
Query: 97 GKGCGFVQFANRKDAEVALQKLQG 120
KG GFV F N DA A++ L G
Sbjct: 254 SKGFGFVNFENADDAARAVESLNG 277
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 38/173 (21%)
Query: 8 DITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------ 55
D+ N+ + + V + G +KG+GFV F + ++ +RA+ +NG
Sbjct: 230 DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 56 ---------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI 94
+ K ++ ++V LD ++SD+ L+E+FS FG + S K+
Sbjct: 290 AQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV 349
Query: 95 ---PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWR 142
P G KG GFV FA ++A A+ +L G I + + ++ +++ R
Sbjct: 350 MRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 402
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVAL 115
N +++VG LD NV+D L + F G +++V++ G G+V F N +DA A+
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 116 QKLQGTAIGKQTVRLSWGH 134
Q+L + + +R+ + H
Sbjct: 95 QELNYIPLYGKPIRVMYSH 113
>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 314
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 16 ETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD------------------ 57
ET + ++ D TG GYGFV D+ R + ++NG
Sbjct: 27 ETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG 86
Query: 58 --GKSNNATIFVGALDSNVSDKDLRELF-SHFGEILSVKIPV-----GKGCGFVQFANRK 109
G+S+ ++FV L +V D L E F HF S KI + K CGFV F + +
Sbjct: 87 KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESER 146
Query: 110 DAEVALQKLQG-TAIGKQTVRLSWGHNPGNKQWRGDHINHW 149
+ + AL LQG T +GK+ +RLS + NK+ W
Sbjct: 147 EQKRALVDLQGATGLGKKALRLSLASSRVNKKKESSENQIW 187
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 6 VSDITNSILQETF-------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG 58
D+ + +L E F K+ +D+N GH+K GFV F E E+ RA++++ G+ G
Sbjct: 102 TPDVDDGMLYEFFHYHFSSCCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATG 160
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 24/142 (16%)
Query: 22 KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIF 66
K+ D TG + GYGFV + D N+ +A+ +NG S +A ++
Sbjct: 65 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLY 124
Query: 67 VGALDSNVSDKDLRELFSHFGEILSVKI-------PVGKGCGFVQFANRKDAEVALQKLQ 119
V +L ++ K++ +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 125 VSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLN 184
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 185 GQKPLGASEPITVKFANNPSQK 206
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 262 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 321
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 322 NGYRLGDRVLQVSF 335
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D N+ +A+ +NG S +A +
Sbjct: 63 CKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANL 122
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V +L ++ K++ +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 123 YVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 182
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 183 GQKPLGASEPITVKFANNPSQK 204
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 267 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 326
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 327 NGYRLGDRVLQVSF 340
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLR 80
+++ +D TG ++G GF+RF E A+ +NG + I V +N S K +
Sbjct: 149 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITV-KFANNPSQKTGQ 207
Query: 81 ELFSHF 86
L +H
Sbjct: 208 ALLTHL 213
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 35/154 (22%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
I N L ETFS KV +D N G+++G+GFV F +E++ A+ +NG
Sbjct: 149 IDNKALHETFSTFGEVLSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLE 207
Query: 56 ----------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-- 97
+ K+N I+V +D +D++ +LFS +GEI+S +
Sbjct: 208 VYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAE 267
Query: 98 ---KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV F + A A+++L G Q +
Sbjct: 268 GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQAL 301
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 28/141 (19%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
+IT ++L + FS +V D+ T + GY +V + D +A+ E+N ++
Sbjct: 60 NITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGR 119
Query: 58 -------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKG 99
K + IF+ L + +K L E FS FGE+LS K+ + +G
Sbjct: 120 PCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRG 179
Query: 100 CGFVQFANRKDAEVALQKLQG 120
GFV F DA+ A++ + G
Sbjct: 180 FGFVHFKEESDAKDAIEAVNG 200
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 39/135 (28%)
Query: 30 GHTKGYGFVRFGDENERSRAMIEMNGSDGKSN---------------------------- 61
G KG+GFV F D N ++A+ E+NG + KS
Sbjct: 268 GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEK 327
Query: 62 -----NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDA 111
+F+ LD ++ D+ L+E F+ +G I S ++ KG GFV F++ ++A
Sbjct: 328 LAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEA 387
Query: 112 EVAL-QKLQGTAIGK 125
A+ +K Q GK
Sbjct: 388 TKAMTEKNQQIVAGK 402
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFANRKDAE 112
++NNA+++VG LD N+++ L ++FS G I S+++ G +V + + + +
Sbjct: 46 ENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGK 105
Query: 113 VALQKLQGTAIGKQTVRLSW 132
A+Q+L I + R+ W
Sbjct: 106 KAIQELNYAEINGRPCRIMW 125
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 17 TFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54
T + A+V D G++KG+GFV F E ++AM E N
Sbjct: 359 TITSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKN 395
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 75 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 134
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 195 GQKPSGATEPITVKFANNPSQK 216
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+T L++ FS+ +++ +D TG ++G GF+RF E A+ +NG
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 202
Query: 63 ATIFVGALDSNVSDKDLRELFSHF 86
I V +N S K + L S
Sbjct: 203 EPITV-KFANNPSQKSSQALLSQL 225
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
KV D NT KG+GFV + +E + A+ +NG
Sbjct: 326 VKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 360
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPGHPGTG--WCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
+VK+ KG GFV N +A +A+ L G +G + +++S+ N
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 354
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 3 YCQVSDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
Y D SIL + F + KV D NT KG+GFV + +E + A+ +NG
Sbjct: 281 YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+T L++ FS+ +++ +D TG ++G GF+RF E A+ +NG
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGAT 195
Query: 63 ATIFVGALDSNVSDKDLRELFSHF 86
I V +N S K + + S
Sbjct: 196 EPITV-KFANNPSQKTNQAILSQL 218
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPGHPGTG--WCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
+VK+ KG GFV N +A +A+ L G +G + +++S+ N
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 354
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 3 YCQVSDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
Y D SIL + F + KV D NT KG+GFV + +E + A+ +NG
Sbjct: 281 YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+T L++ FS+ +++ +D TG ++G GF+RF E A+ +NG
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGAT 195
Query: 63 ATIFVGALDSNVSDKDLRELFSHF 86
I V +N S K + + S
Sbjct: 196 EPITV-KFANNPSQKTNQAILSQL 218
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 80 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 139
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 200 GQKPSGATEPITVKFANNPSQK 221
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+T L++ FS+ +++ +D TG ++G GF+RF E A+ +NG
Sbjct: 148 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 207
Query: 63 ATIFVGALDSNVSDKDLRELFSHF 86
I V +N S K + L S
Sbjct: 208 EPITV-KFANNPSQKSSQALLSQL 230
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
KV D NT KG+GFV + +E + A+ +NG
Sbjct: 331 VKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 365
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 96 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 155
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 215
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 216 GQKPPGATEPITVKFANNPSQK 237
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 294 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 353
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 354 NGYRLGDRVLQVSF 367
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 3 YCQVSDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
Y D SIL + F + KV D NT KG+GFV + +E + A+ +NG
Sbjct: 297 YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 355
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+T L++ FS+ +++ +D TG ++G GF+RF E A+ +NG
Sbjct: 164 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGAT 223
Query: 63 ATIFV 67
I V
Sbjct: 224 EPITV 228
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 119 QGTAIGKQTVRLSWGHN 135
G +G + +++S+ N
Sbjct: 339 NGYRLGDRVLQVSFKTN 355
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 3 YCQVSDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
Y D SIL + F + KV D NT KG+GFV + +E + A+ +NG
Sbjct: 282 YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 340
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+T L++ FS+ +++ +D TG ++G GF+RF E A+ +NG
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGAT 195
Query: 63 ATIFVGALDSNVSDKDLRELFSHF 86
I V +N S K + + S
Sbjct: 196 EPITV-KFANNPSQKTNQAILSQL 218
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPPGATEPITVKFANNPSQK 209
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 34 GYGFVRFGD---ENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90
YG RF + S A I + G G IFV L + + L ++F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPGHPGTG--WCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 91 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135
+VK+ KG GFV N +A +A+ L G +G + +++S+ N
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 354
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 3 YCQVSDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
Y D SIL + F + KV D NT KG+GFV + +E + A+ +NG
Sbjct: 281 YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+T L++ FS+ +++ +D TG ++G GF+RF E A+ +NG
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGAT 195
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95
I V +N S K + + S + + + P
Sbjct: 196 EPITV-KFANNPSQKTNQAILSQLYQSPNRRYP 227
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 62.8 bits (151), Expect = 8e-10, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 62.8 bits (151), Expect = 8e-10, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+ELF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATI 65
K+ D TG + GYGFV + D + +A+ +NG S +A +
Sbjct: 68 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 127
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQ 119
+V L ++ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 120 GTAI--GKQTVRLSWGHNPGNK 139
G + + + + +NP K
Sbjct: 188 GQKPSGATEPITVKFANNPSQK 209
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 118
IFV L + + L +LF FG + +VK+ KG GFV N +A +A+ L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 119 QGTAIGKQTVRLSWGHNPGNK 139
G +G + +++S+ N +K
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+T L++ FS+ +++ +D TG ++G GF+RF E A+ +NG
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 195
Query: 63 ATIFVGALDSNVSDKDLRELFSHF 86
I V +N S K + L S
Sbjct: 196 EPITV-KFANNPSQKSSQALLSQL 218
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
KV D NT KG+GFV + +E + A+ +NG
Sbjct: 319 VKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A+ K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L+E F +G LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
+G GFV F +DA+ A+ + G + + +
Sbjct: 226 DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 48/178 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSN 61
D+ + L+E F + KV D + G ++G+GFV F + +A+ +MNG D N
Sbjct: 201 DMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKD--LN 257
Query: 62 NATIFVGA-----------------------------------LDSNVSDKDLRELFSHF 86
IFVG LD + D+ LR+ F+ F
Sbjct: 258 GKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPF 317
Query: 87 GEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
G I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 318 GSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 62.8 bits (151), Expect = 8e-10, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGR 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A+ K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S +++D+ L+E+F +G LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
KG GFV F +DA+ A+ ++ G + +++
Sbjct: 226 DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L+E F + KV D N G +KG+GFV F + +A+ EMNG D GK
Sbjct: 201 DMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
S ++V LD + D+ LR+ F FG
Sbjct: 260 SMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L +V++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 18 FSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------------- 55
S A+V D TG +KGYGFV F ++ + A+ +M G
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 56 ---------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC 100
+ +N T++ G + S ++++ +R+ FS FG+I+ +++ KG
Sbjct: 192 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 251
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
FV+F + + A A+ + GT I V+ WG
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----S 56
D+T +++ + FS+ K+ +D T Y FV F + + A+ MNG
Sbjct: 17 DVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGK 74
Query: 57 DGKSNNAT-------------------------IFVGALDSNVSDKDLRELFSHFGEILS 91
+ K N AT +FVG L ++ +D++ F+ FG I
Sbjct: 75 EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 92 VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133
++ KG GFV F N+ DAE A+Q++ G +G + +R +W
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 3 YC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56
YC S +T ++++TFS ++ KGY FVRF + A++ +NG+
Sbjct: 217 YCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 272
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-----CGFVQFANRKDAEVALQKL 118
T++VG L +V++ + +LFS G + K+ + C FV+F + A AL +
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAM 66
Query: 119 QGTAIGKQTVRLSWGHNPGNKQ 140
G I + V+++W P +++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQK 88
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 21 DATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
S KS IF+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 81 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ AE A++K+ G + + V
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGYGFV F + RA+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ D+ L++LF FG LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAI-GKQ 126
KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 44/176 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GK 59
D+ + L++ F + KV D +G +KG+GFV F + +A+ EMNG + GK
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 60 S-------------------------------NNATIFVGALDSNVSDKDLRELFSHFGE 88
++V LD + D+ LR+ FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
I S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN S A+++VG L + ++ L E FS G ILS+++ G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + VR+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>sp|Q1ZXC2|PAP1B_DICDI Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum
GN=pabpc1B PE=3 SV=1
Length = 814
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 29/146 (19%)
Query: 7 SDITNSILQETFSRA--------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN---- 54
+D+ IL E FS+ V DSNT + GY +V F + ++ RA+ +N
Sbjct: 193 ADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLV 252
Query: 55 -------------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP----VG 97
+ K+N IFV L+ V + L + FS FG ILS K+ +
Sbjct: 253 HGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEKGIS 312
Query: 98 KGCGFVQFANRKDAEVALQKLQGTAI 123
KG G+V F AE A++K+ GT I
Sbjct: 313 KGYGYVHFETNDSAEKAIEKVNGTLI 338
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 59 KSNNATIFVGALDSNVSDKDL-RELFSHFGEILSVKI-----PVGKGCGFVQFANRKDAE 112
K+ + ++F+ +D ++ D+DL +E F+ G I+ +KI KG GF+ F+ ++A+
Sbjct: 466 KTTDLSLFINNIDESI-DRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQ 524
Query: 113 VALQKLQGTAIGKQTVRLSWGHNPGNK 139
AL L G G + +++S+ + N+
Sbjct: 525 KALDSLNGFTFGSKQIQVSFSNKDNNQ 551
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 26/133 (19%)
Query: 9 ITNSILQETFSR----AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD--GKSNN 62
+ N++L +TFS ++ G +KGYG+V F + +A+ ++NG+ GK N
Sbjct: 285 VDNAMLYDTFSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPIN 344
Query: 63 ATIFVGAL--------------DSNVSDKDLR-ELFSHFGEILSVKIP-----VGKGCGF 102
FV + D +++ + L+ EL + FGEI S + KG G
Sbjct: 345 VERFVSKVERYKVENKVFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGL 404
Query: 103 VQFANRKDAEVAL 115
V+F N++DA+ L
Sbjct: 405 VEFKNQEDAQKIL 417
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK--------GCGFVQFANRKDAEVA 114
+++VG L ++V++ L ELFS G I V + G +V F N DAE A
Sbjct: 184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERA 243
Query: 115 LQKLQGTAIGKQTVRLSWGHNPGNKQ 140
L L T + + R+ W + K+
Sbjct: 244 LDTLNYTLVHGKPCRIMWSYRDPTKR 269
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D N +KGY FV F + +A+ +MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKI--- 94
+FVG S V D+ L+ELFS FG+ LSVK+
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 95 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
P G KG GFV + +DA A++++ G I + +
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 27/149 (18%)
Query: 7 SDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------ 54
SD+T ++L E FS A +V D T + GY +V F + RA+ MN
Sbjct: 20 SDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Query: 55 -----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKG 99
S KS +F+ LD ++ +K L + FS FG ILS K+ KG
Sbjct: 80 KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 139
Query: 100 CGFVQFANRKDAEVALQKLQGTAIGKQTV 128
FV F ++ A+ A++K+ G + + V
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 47/184 (25%)
Query: 8 DITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
++ + L+E FS+ KV D N G +KG+GFV + + ++A+ EMNG +
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Query: 58 -----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
+ +++ LD + D+ LR+ FS FG
Sbjct: 260 IIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQWRGD 144
I S K+ + KG GFV F++ ++A A+ ++ G +G + + ++ K+ R
Sbjct: 320 ITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKA 376
Query: 145 HINH 148
H+ +
Sbjct: 377 HLTN 380
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L S+V++ L E FS G +LS+++ G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH 134
DAE AL + I + +R+ W
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQ 88
>sp|Q9UPN6|SCAF8_HUMAN Protein SCAF8 OS=Homo sapiens GN=SCAF8 PE=1 SV=1
Length = 1271
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 121
+ T++VG +D + +DL LF FG+I S+ + +GC +V +R+DA ALQKL
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 535
Query: 122 A--IGKQTVRLSWGHNPGNK 139
+ IG + ++++W N G K
Sbjct: 536 SYKIGSKVIKIAWALNKGVK 555
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 29 TGHTKGYGFVRFGDENERSRAMIEMN-----------------GSDGKSNNATIFVGALD 71
T + GY +V F + + SRAM +N S S +F+ LD
Sbjct: 95 THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLD 154
Query: 72 SNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
+++ +K L E FS FG ILS K+ + KG GFVQF + A+ A+ KL G + +
Sbjct: 155 ASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDK 214
Query: 127 TV 128
V
Sbjct: 215 QV 216
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 84/176 (47%), Gaps = 43/176 (24%)
Query: 8 DITNSILQETFSR-----AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------- 55
+IT+ L++TF + + V + +G+++ +GFV F + A+ +MNG
Sbjct: 249 EITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDV 308
Query: 56 ---------SD-----------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
SD K + +++ LD +V+D+ L+E+FS +G +
Sbjct: 309 LYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNV 368
Query: 90 LSVKI-----PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140
S K+ + +G GFV ++N ++A +A++++ G IG++ + ++ +Q
Sbjct: 369 TSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQ 424
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKI-----PVGKGCGFVQFANRKDAEVALQ 116
N++++VG LD +V++ L +LF+ + ++++ G +V FAN +DA A++
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME 117
Query: 117 KLQGTAIGKQTVRL 130
L I + +R+
Sbjct: 118 SLNYAPIRDRPIRI 131
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D + ++GYGFV F + +RA+ MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ DK LRE+FS FG LSVK+ +
Sbjct: 166 RKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
+G GFV + N ++A+ A+ ++ G + + +
Sbjct: 226 DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 44/162 (27%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + L+E FS KV +D +TG ++G+GFV +G+ E +A+ EMNG +
Sbjct: 201 DMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259
Query: 58 -----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
+ ++V LD + D LR+ FS +G
Sbjct: 260 MIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
I S K+ KG GFV F++ ++A A+ ++ G + +
Sbjct: 320 ITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTK 361
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + GY ++ F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGR 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
KS +F+ LD ++ +K L + FS FG ILS K+ +G
Sbjct: 81 PIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F ++ A A+Q + G + + V
Sbjct: 141 GFVHFETQEAANRAIQTMNGMLLNDRKV 168
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI------PVGKGCGFVQFA 106
MN + A+++VG L +V++ L E FS G I+S+++ G ++ F
Sbjct: 1 MNATGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH-NPG 137
DAE AL + I + +R+ W +PG
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRIMWSQRDPG 92
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 22/117 (18%)
Query: 34 GYGFVRFGDENERSRAMIEMN-----------------GSDGKSNNATIFVGALDSNVSD 76
GY ++ F + N+ RAM +N S S IF+ LD+++ +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDN 149
Query: 77 KDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
K L E FS FG ILS K+ + KG GFVQF + A+ A+ KL G + + V
Sbjct: 150 KALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 43/167 (25%)
Query: 8 DITNSILQETFSR-----AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-SDG--- 58
+I L++TF + + V + +G+++ +GFV F + A+ +MNG S G
Sbjct: 239 EIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDV 298
Query: 59 -----------------------------KSNNATIFVGALDSNVSDKDLRELFSHFGEI 89
KS A +++ LD +V D+ L+E+FS +G +
Sbjct: 299 LYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNV 358
Query: 90 LSVKI---PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131
S K+ P G +G GFV ++N ++A AL ++ G IG++ + ++
Sbjct: 359 TSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 39/154 (25%)
Query: 7 SDITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS 60
+ I N L ETFS KV +D TG +KGYGFV+F E A+ ++NG
Sbjct: 145 ASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGM--LM 201
Query: 61 NNATIFVG--------ALDSN-----------------VSDKDLRELFSHFGEILSVKIP 95
N+ +FVG A D N + + +LR+ F FG I S +
Sbjct: 202 NDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVM 261
Query: 96 VGKG----C-GFVQFANRKDAEVALQKLQGTAIG 124
+ C GFV F + A A++K+ G ++G
Sbjct: 262 RDQSGNSRCFGFVNFECTEAAASAVEKMNGISLG 295
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 9 ITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
I N L +TFS KV D + ++GYGFV F +RA+ MNG N+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGM--LLND 165
Query: 63 ATIFVGALDS-------------------------NVSDKDLRELFSHFGEILSVKIPV- 96
+FVG S ++ DK LRE+FS FG LSVK+ +
Sbjct: 166 RKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD 225
Query: 97 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128
+G GFV + N ++A+ A+ ++ G + + +
Sbjct: 226 DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 27/148 (18%)
Query: 8 DITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN------- 54
D+T ++L E FS A +V D T + Y ++ F + RA+ MN
Sbjct: 21 DVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGR 80
Query: 55 ----------GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGC 100
KS +F+ LD ++ +K L + FS FG ILS K+ +G
Sbjct: 81 PIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGY 140
Query: 101 GFVQFANRKDAEVALQKLQGTAIGKQTV 128
GFV F + A A+Q + G + + V
Sbjct: 141 GFVHFETHEAANRAIQTMNGMLLNDRKV 168
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 44/162 (27%)
Query: 8 DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD---- 57
D+ + L+E FS KV +D ++G ++G+GFV +G+ E +A+ EMNG +
Sbjct: 201 DMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259
Query: 58 -----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGE 88
+ ++V LD + D LR+ F +G
Sbjct: 260 MIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGT 319
Query: 89 ILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126
I S K+ KG GFV F++ ++A A+ ++ G + +
Sbjct: 320 ITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTK 361
Score = 37.4 bits (85), Expect = 0.033, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC------GFVQFA 106
MN + A++++G L +V++ L E FS G I+S+++ ++ F
Sbjct: 1 MNATGAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQ 60
Query: 107 NRKDAEVALQKLQGTAIGKQTVRLSWGH-NPG 137
DAE AL + I + +R+ W +PG
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRIMWSQRDPG 92
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 16/108 (14%)
Query: 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGK---------------SNNATI 65
+V D+ TGH+KG+GFVRF D + + M + + DG+ + +
Sbjct: 134 VQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKSPDEPMRSRKV 193
Query: 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPVG-KGCGFVQFANRKDAE 112
FVG ++S ++LR+ FS +GE++ V IP + FV FA+ + A+
Sbjct: 194 FVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTFADDQVAQ 241
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFAN 107
+ + + V L +++DL++ FS FGE++ V++ KG GFV+FA+
Sbjct: 102 TKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFAD 155
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 30 GHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKSNNATIFVGALDSNV 74
G + GYGFV + D + +A+ +NG S +A ++V L +
Sbjct: 105 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTM 164
Query: 75 SDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQGTAI--GKQ 126
+ K+L +LFS +G I++ +I V +G GF++F R +AE A++ L G +
Sbjct: 165 TQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATE 224
Query: 127 TVRLSWGHNPGNK 139
+ + + +NP K
Sbjct: 225 PITVKFANNPSQK 237
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKL 118
IFV L + + L ++F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 119 QGTAIGKQTVRLSW 132
G +G + +++S+
Sbjct: 368 NGYRLGDRVLQVSF 381
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 3 YCQVSDITNSILQETF------SRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55
Y D SIL + F + KV D NT KG+GFV + +E + A+ +NG
Sbjct: 311 YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 369
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 9 ITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNN 62
+T L++ FS+ +++ +D TG ++G GF+RF E A+ +NG
Sbjct: 164 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGAT 223
Query: 63 ATIFV 67
I V
Sbjct: 224 EPITV 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,697,614
Number of Sequences: 539616
Number of extensions: 2415008
Number of successful extensions: 9254
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 407
Number of HSP's that attempted gapping in prelim test: 6767
Number of HSP's gapped (non-prelim): 2164
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)