Query 038175
Match_columns 155
No_of_seqs 124 out of 1742
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 9.6E-30 2.1E-34 188.2 18.5 137 2-138 112-277 (346)
2 KOG0148 Apoptosis-promoting RN 100.0 1.2E-28 2.7E-33 170.9 16.2 135 2-136 67-238 (321)
3 TIGR01645 half-pint poly-U bin 100.0 2.2E-27 4.9E-32 184.5 18.3 138 2-139 112-287 (612)
4 KOG0117 Heterogeneous nuclear 100.0 1E-27 2.2E-32 176.1 12.7 137 2-140 88-335 (506)
5 TIGR01648 hnRNP-R-Q heterogene 100.0 1.1E-26 2.3E-31 180.3 18.5 135 2-139 63-310 (578)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 3.2E-26 6.9E-31 171.0 18.2 136 2-137 94-350 (352)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.3E-26 5E-31 171.8 17.4 136 2-137 8-172 (352)
8 TIGR01622 SF-CC1 splicing fact 99.9 1.6E-25 3.5E-30 172.5 18.5 133 2-135 94-265 (457)
9 KOG0145 RNA-binding protein EL 99.9 6.5E-26 1.4E-30 157.0 10.6 138 2-139 46-212 (360)
10 KOG0144 RNA-binding protein CU 99.9 3.8E-25 8.2E-30 162.0 10.8 139 2-140 39-210 (510)
11 TIGR01628 PABP-1234 polyadenyl 99.9 2.5E-24 5.5E-29 169.5 15.9 135 2-136 5-167 (562)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.9 9E-24 1.9E-28 164.7 15.8 133 2-135 180-374 (509)
13 TIGR01628 PABP-1234 polyadenyl 99.9 1.4E-23 3.1E-28 165.3 16.8 134 2-136 183-364 (562)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 5.4E-23 1.2E-27 159.2 15.1 134 2-135 7-173 (481)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.9E-22 6.2E-27 155.1 16.0 130 2-136 280-480 (481)
16 KOG0145 RNA-binding protein EL 99.9 2.9E-22 6.3E-27 139.0 13.7 135 2-136 132-358 (360)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 8.4E-22 1.8E-26 153.7 16.1 134 2-135 300-501 (509)
18 KOG0127 Nucleolar protein fibr 99.9 9.5E-22 2.1E-26 148.0 13.1 134 2-135 10-195 (678)
19 KOG0131 Splicing factor 3b, su 99.8 1.1E-20 2.4E-25 124.6 9.1 139 2-140 14-181 (203)
20 KOG0109 RNA-binding protein LA 99.8 1E-20 2.2E-25 132.9 9.2 132 2-137 7-151 (346)
21 TIGR01622 SF-CC1 splicing fact 99.8 2.5E-19 5.5E-24 138.2 17.0 134 2-135 191-447 (457)
22 KOG0127 Nucleolar protein fibr 99.8 5.4E-19 1.2E-23 133.3 13.2 133 2-135 122-377 (678)
23 KOG0123 Polyadenylate-binding 99.8 1.2E-18 2.5E-23 130.2 14.2 131 2-136 3-153 (369)
24 KOG0124 Polypyrimidine tract-b 99.8 2.2E-19 4.8E-24 130.0 8.6 133 2-134 118-288 (544)
25 PLN03134 glycine-rich RNA-bind 99.8 7.1E-18 1.5E-22 110.9 13.4 78 59-136 31-114 (144)
26 KOG0110 RNA-binding protein (R 99.8 9.5E-19 2.1E-23 135.2 10.6 136 2-137 520-694 (725)
27 KOG0146 RNA-binding protein ET 99.8 5.2E-18 1.1E-22 118.3 10.6 85 56-140 279-369 (371)
28 KOG0144 RNA-binding protein CU 99.7 1.6E-17 3.5E-22 122.3 10.8 85 56-140 418-508 (510)
29 KOG0105 Alternative splicing f 99.7 2.7E-16 5.8E-21 104.4 13.9 123 2-125 11-177 (241)
30 KOG0147 Transcriptional coacti 99.7 5.3E-17 1.1E-21 122.6 9.0 130 5-135 187-357 (549)
31 KOG4205 RNA-binding protein mu 99.7 8.1E-17 1.8E-21 116.9 9.2 137 3-140 12-180 (311)
32 TIGR01645 half-pint poly-U bin 99.7 1.6E-15 3.5E-20 118.8 16.4 74 62-135 514-602 (612)
33 KOG0123 Polyadenylate-binding 99.7 6.4E-16 1.4E-20 115.5 10.9 132 1-135 80-245 (369)
34 PF00076 RRM_1: RNA recognitio 99.7 9.3E-16 2E-20 88.7 8.1 65 65-129 1-70 (70)
35 KOG4212 RNA-binding protein hn 99.7 2.2E-15 4.9E-20 111.5 11.9 75 59-133 533-608 (608)
36 KOG0148 Apoptosis-promoting RN 99.6 2.8E-15 6E-20 104.8 9.0 124 2-135 11-141 (321)
37 TIGR01659 sex-lethal sex-letha 99.6 6.1E-15 1.3E-19 109.7 10.4 80 57-136 102-187 (346)
38 KOG0121 Nuclear cap-binding pr 99.6 3.4E-15 7.4E-20 93.5 7.3 85 42-135 25-115 (153)
39 KOG1457 RNA binding protein (c 99.6 1.8E-14 3.9E-19 98.4 10.4 122 2-123 39-273 (284)
40 KOG4211 Splicing factor hnRNP- 99.6 3E-14 6.5E-19 106.8 12.3 131 3-134 16-180 (510)
41 PLN03120 nucleic acid binding 99.6 1.9E-14 4E-19 101.6 10.5 74 61-135 3-79 (260)
42 KOG0107 Alternative splicing f 99.6 1.4E-14 3.1E-19 95.3 9.2 78 59-136 7-85 (195)
43 KOG4207 Predicted splicing fac 99.6 1.4E-14 3.1E-19 97.7 8.6 80 56-135 7-92 (256)
44 PF14259 RRM_6: RNA recognitio 99.6 2.7E-14 5.8E-19 82.8 8.4 65 65-129 1-70 (70)
45 KOG0125 Ataxin 2-binding prote 99.6 2.3E-14 5E-19 102.6 9.3 81 56-136 90-174 (376)
46 KOG0110 RNA-binding protein (R 99.6 9.3E-14 2E-18 108.0 12.6 133 2-134 390-596 (725)
47 KOG0105 Alternative splicing f 99.5 3.7E-14 8E-19 94.3 8.6 77 60-136 4-83 (241)
48 PF13893 RRM_5: RNA recognitio 99.5 1.1E-13 2.4E-18 76.7 8.9 55 79-133 1-56 (56)
49 smart00362 RRM_2 RNA recogniti 99.5 1.5E-13 3.3E-18 79.1 9.3 68 64-131 1-72 (72)
50 KOG0130 RNA-binding protein RB 99.5 4.5E-14 9.6E-19 89.4 7.3 108 31-138 32-154 (170)
51 KOG0147 Transcriptional coacti 99.5 1.4E-13 3E-18 104.4 10.9 134 2-135 283-527 (549)
52 KOG4206 Spliceosomal protein s 99.5 8.9E-13 1.9E-17 90.3 13.8 133 2-134 14-220 (221)
53 PLN03213 repressor of silencin 99.5 1E-13 2.2E-18 104.4 9.9 79 58-136 6-88 (759)
54 KOG0114 Predicted RNA-binding 99.5 2.2E-13 4.7E-18 82.5 8.7 80 57-136 13-95 (124)
55 KOG0113 U1 small nuclear ribon 99.5 2.4E-13 5.1E-18 96.4 10.3 86 59-144 98-189 (335)
56 KOG0122 Translation initiation 99.5 1.8E-13 3.8E-18 94.6 9.4 79 58-136 185-269 (270)
57 KOG1548 Transcription elongati 99.5 1.7E-12 3.8E-17 93.7 13.7 134 2-135 139-351 (382)
58 TIGR01648 hnRNP-R-Q heterogene 99.5 5.4E-13 1.2E-17 104.5 11.2 92 42-133 18-135 (578)
59 PLN03121 nucleic acid binding 99.5 8.3E-13 1.8E-17 92.0 10.3 74 60-134 3-79 (243)
60 KOG0106 Alternative splicing f 99.4 9.9E-14 2.1E-18 95.5 4.8 128 2-133 6-168 (216)
61 cd00590 RRM RRM (RNA recogniti 99.4 2.7E-12 5.7E-17 74.2 9.6 69 64-132 1-74 (74)
62 KOG1190 Polypyrimidine tract-b 99.4 6.6E-12 1.4E-16 92.5 13.3 134 4-137 157-374 (492)
63 KOG0111 Cyclophilin-type pepti 99.4 4.4E-13 9.6E-18 91.5 5.0 82 59-140 7-94 (298)
64 smart00360 RRM RNA recognition 99.4 3.4E-12 7.4E-17 73.1 7.9 65 67-131 1-71 (71)
65 KOG0131 Splicing factor 3b, su 99.4 1.6E-12 3.5E-17 86.3 6.3 77 58-134 5-87 (203)
66 KOG0120 Splicing factor U2AF, 99.4 8.5E-12 1.8E-16 95.4 10.9 135 1-135 293-491 (500)
67 KOG0153 Predicted RNA-binding 99.3 8.3E-12 1.8E-16 90.2 9.3 80 56-135 222-302 (377)
68 PLN03134 glycine-rich RNA-bind 99.3 5.2E-12 1.1E-16 83.2 6.4 64 2-67 39-108 (144)
69 KOG0109 RNA-binding protein LA 99.3 6.7E-12 1.5E-16 88.9 7.2 72 63-136 3-74 (346)
70 KOG0117 Heterogeneous nuclear 99.3 3.7E-11 8.1E-16 89.5 11.4 100 36-135 37-163 (506)
71 KOG1190 Polypyrimidine tract-b 99.3 4.5E-11 9.7E-16 88.3 11.0 130 2-136 302-491 (492)
72 KOG0126 Predicted RNA-binding 99.3 4.8E-13 1E-17 88.7 0.5 77 59-135 32-114 (219)
73 KOG0122 Translation initiation 99.3 5.3E-12 1.1E-16 87.4 5.6 54 2-55 194-253 (270)
74 KOG4206 Spliceosomal protein s 99.3 2.2E-11 4.7E-16 83.5 8.3 78 60-137 7-91 (221)
75 COG0724 RNA-binding proteins ( 99.3 3.4E-11 7.4E-16 86.3 9.8 73 62-134 115-193 (306)
76 KOG1365 RNA-binding protein Fu 99.3 6.1E-11 1.3E-15 87.0 10.3 132 3-134 167-360 (508)
77 PF00076 RRM_1: RNA recognitio 99.3 1.2E-11 2.5E-16 71.3 5.4 53 2-55 3-61 (70)
78 KOG0415 Predicted peptidyl pro 99.3 3.2E-11 7E-16 87.7 7.9 88 56-143 233-326 (479)
79 KOG0108 mRNA cleavage and poly 99.2 3.7E-11 8.1E-16 91.2 7.9 75 63-137 19-99 (435)
80 KOG0132 RNA polymerase II C-te 99.2 4.3E-11 9.3E-16 94.3 8.3 82 59-140 418-499 (894)
81 KOG0149 Predicted RNA-binding 99.2 1.1E-10 2.3E-15 80.6 8.3 76 58-134 8-89 (247)
82 KOG0124 Polypyrimidine tract-b 99.2 1.6E-11 3.5E-16 89.6 4.4 74 59-132 110-189 (544)
83 PF14259 RRM_6: RNA recognitio 99.1 1.5E-10 3.3E-15 66.8 5.9 53 2-55 3-61 (70)
84 KOG1456 Heterogeneous nuclear 99.1 5.4E-10 1.2E-14 81.9 9.8 136 2-137 36-200 (494)
85 smart00361 RRM_1 RNA recogniti 99.1 4.1E-10 8.8E-15 65.2 7.5 56 76-131 2-70 (70)
86 KOG0120 Splicing factor U2AF, 99.1 1.7E-10 3.8E-15 88.3 6.2 135 2-136 180-369 (500)
87 KOG1457 RNA binding protein (c 99.1 1.5E-09 3.3E-14 74.5 9.8 85 59-143 31-125 (284)
88 KOG0149 Predicted RNA-binding 99.0 2.7E-10 5.9E-15 78.6 4.5 54 2-55 17-76 (247)
89 KOG4212 RNA-binding protein hn 99.0 1.7E-09 3.7E-14 80.8 9.0 79 58-136 40-124 (608)
90 KOG1456 Heterogeneous nuclear 99.0 1.8E-08 4E-13 74.0 13.1 79 58-136 283-363 (494)
91 smart00360 RRM RNA recognition 99.0 2.5E-09 5.4E-14 60.9 6.4 54 2-55 1-60 (71)
92 KOG4211 Splicing factor hnRNP- 99.0 2.8E-08 6.1E-13 75.2 13.0 128 3-133 109-355 (510)
93 COG0724 RNA-binding proteins ( 99.0 9.8E-09 2.1E-13 73.5 10.1 95 2-96 120-259 (306)
94 KOG4208 Nucleolar RNA-binding 98.9 6E-09 1.3E-13 70.7 8.0 81 56-136 43-130 (214)
95 KOG0114 Predicted RNA-binding 98.9 2.9E-09 6.3E-14 64.7 5.7 55 2-56 23-80 (124)
96 KOG0106 Alternative splicing f 98.9 2.6E-09 5.7E-14 73.8 5.9 76 63-140 2-77 (216)
97 KOG0112 Large RNA-binding prot 98.9 4.3E-09 9.2E-14 84.5 5.5 136 2-137 377-532 (975)
98 KOG0146 RNA-binding protein ET 98.9 2.3E-09 5E-14 75.6 3.5 81 60-140 17-105 (371)
99 KOG4207 Predicted splicing fac 98.8 3E-09 6.6E-14 72.3 3.8 56 2-57 18-79 (256)
100 KOG0107 Alternative splicing f 98.8 4.4E-09 9.5E-14 69.7 4.3 54 2-57 15-71 (195)
101 KOG0129 Predicted RNA-binding 98.8 1.6E-07 3.5E-12 71.6 12.7 116 2-117 264-432 (520)
102 KOG4660 Protein Mei2, essentia 98.8 6.9E-09 1.5E-13 79.5 5.0 73 57-129 70-143 (549)
103 KOG0116 RasGAP SH3 binding pro 98.8 3.5E-08 7.6E-13 74.8 8.7 75 60-135 286-366 (419)
104 KOG0128 RNA-binding protein SA 98.8 2.3E-09 5E-14 85.5 1.6 133 1-135 671-814 (881)
105 KOG4661 Hsp27-ERE-TATA-binding 98.8 4E-08 8.6E-13 75.9 8.0 77 59-135 402-484 (940)
106 PLN03120 nucleic acid binding 98.8 2E-08 4.3E-13 71.3 5.9 50 2-55 9-64 (260)
107 KOG2193 IGF-II mRNA-binding pr 98.8 4E-10 8.7E-15 83.7 -2.8 132 3-134 7-155 (584)
108 smart00362 RRM_2 RNA recogniti 98.7 3.5E-08 7.5E-13 56.3 5.8 52 2-55 4-61 (72)
109 KOG0533 RRM motif-containing p 98.7 1.2E-07 2.6E-12 67.0 8.8 80 58-137 79-163 (243)
110 KOG0125 Ataxin 2-binding prote 98.7 1.5E-08 3.3E-13 73.2 4.2 52 2-55 101-158 (376)
111 PLN03121 nucleic acid binding 98.7 6.1E-08 1.3E-12 67.9 5.8 50 2-55 10-65 (243)
112 PF04059 RRM_2: RNA recognitio 98.7 3.9E-07 8.4E-12 55.7 8.5 77 62-138 1-89 (97)
113 KOG0108 mRNA cleavage and poly 98.6 4.9E-08 1.1E-12 74.5 5.3 54 2-55 23-82 (435)
114 KOG1548 Transcription elongati 98.6 2.4E-07 5.2E-12 67.5 8.0 79 59-137 131-222 (382)
115 smart00361 RRM_1 RNA recogniti 98.6 1.2E-07 2.5E-12 54.8 5.3 46 11-56 2-60 (70)
116 KOG0121 Nuclear cap-binding pr 98.6 6.3E-08 1.4E-12 61.2 4.1 56 2-57 41-102 (153)
117 KOG0130 RNA-binding protein RB 98.6 6E-08 1.3E-12 61.8 4.0 54 2-55 77-136 (170)
118 cd00590 RRM RRM (RNA recogniti 98.6 3E-07 6.4E-12 52.6 6.0 55 2-57 4-64 (74)
119 PF08777 RRM_3: RNA binding mo 98.5 4.3E-07 9.3E-12 56.6 6.7 69 63-131 2-75 (105)
120 KOG4209 Splicing factor RNPS1, 98.5 4.6E-07 1E-11 64.0 7.1 79 57-136 96-180 (231)
121 KOG0151 Predicted splicing reg 98.5 4.9E-07 1.1E-11 71.4 7.1 79 57-135 169-256 (877)
122 KOG0113 U1 small nuclear ribon 98.5 3.4E-07 7.4E-12 65.6 5.6 54 2-55 106-165 (335)
123 KOG4210 Nuclear localization s 98.4 7.7E-07 1.7E-11 64.8 6.6 108 28-136 125-264 (285)
124 PF11608 Limkain-b1: Limkain b 98.4 2.6E-06 5.6E-11 50.1 7.4 68 63-134 3-75 (90)
125 KOG4208 Nucleolar RNA-binding 98.4 6.2E-07 1.3E-11 61.1 5.0 53 4-56 56-115 (214)
126 KOG0126 Predicted RNA-binding 98.4 2.3E-08 5E-13 66.8 -2.0 54 2-55 40-99 (219)
127 KOG0226 RNA-binding proteins [ 98.4 7.3E-07 1.6E-11 62.6 4.8 106 30-135 137-269 (290)
128 KOG4660 Protein Mei2, essentia 98.4 5.4E-07 1.2E-11 69.3 4.5 132 2-135 80-249 (549)
129 KOG4454 RNA binding protein (R 98.4 2E-07 4.4E-12 64.1 1.9 75 59-133 6-84 (267)
130 PLN03213 repressor of silencin 98.3 9.5E-07 2.1E-11 67.5 5.4 50 2-55 15-72 (759)
131 KOG4205 RNA-binding protein mu 98.3 1.1E-06 2.3E-11 64.6 5.1 79 61-140 5-89 (311)
132 KOG4676 Splicing factor, argin 98.3 7.6E-08 1.6E-12 71.2 -1.2 122 2-124 12-214 (479)
133 KOG4307 RNA binding protein RB 98.3 1.7E-06 3.8E-11 68.4 5.8 135 1-135 315-513 (944)
134 PF04059 RRM_2: RNA recognitio 98.2 6.6E-06 1.4E-10 50.3 5.6 54 2-55 6-67 (97)
135 KOG1365 RNA-binding protein Fu 98.2 9.9E-06 2.2E-10 60.2 7.1 127 3-130 66-237 (508)
136 KOG0226 RNA-binding proteins [ 98.1 3.2E-06 6.9E-11 59.5 4.3 52 5-56 198-255 (290)
137 KOG4454 RNA binding protein (R 98.0 3E-06 6.6E-11 58.4 2.1 120 2-122 14-149 (267)
138 PF14605 Nup35_RRM_2: Nup53/35 98.0 2.9E-05 6.3E-10 42.2 5.4 52 63-115 2-53 (53)
139 PF13893 RRM_5: RNA recognitio 98.0 1E-05 2.2E-10 44.4 3.4 25 33-57 21-45 (56)
140 COG5175 MOT2 Transcriptional r 98.0 3.5E-05 7.5E-10 56.5 6.8 77 59-135 111-202 (480)
141 KOG0533 RRM motif-containing p 97.9 2.6E-05 5.7E-10 55.3 5.0 55 1-55 87-146 (243)
142 KOG1855 Predicted RNA-binding 97.9 5.2E-05 1.1E-09 57.1 6.4 65 56-120 225-308 (484)
143 PF05172 Nup35_RRM: Nup53/35/4 97.9 0.0001 2.2E-09 45.3 6.6 72 61-134 5-90 (100)
144 KOG1995 Conserved Zn-finger pr 97.8 4.1E-05 8.9E-10 56.4 5.5 81 58-138 62-156 (351)
145 KOG0116 RasGAP SH3 binding pro 97.8 5.5E-05 1.2E-09 57.8 5.7 63 2-67 293-361 (419)
146 KOG3152 TBP-binding protein, a 97.8 2E-05 4.4E-10 55.5 2.7 67 61-127 73-157 (278)
147 KOG0415 Predicted peptidyl pro 97.7 3.1E-05 6.7E-10 57.1 3.6 62 4-67 246-313 (479)
148 KOG0111 Cyclophilin-type pepti 97.7 2.3E-05 4.9E-10 54.3 2.0 54 2-55 15-74 (298)
149 PF08952 DUF1866: Domain of un 97.6 0.00076 1.6E-08 44.1 8.4 75 59-136 24-107 (146)
150 KOG0132 RNA polymerase II C-te 97.6 0.00032 7E-09 56.6 7.2 55 3-57 427-481 (894)
151 PF11608 Limkain-b1: Limkain b 97.6 0.00028 6.1E-09 41.6 5.2 65 1-72 6-76 (90)
152 KOG4307 RNA binding protein RB 97.5 0.00058 1.3E-08 54.7 7.4 74 59-132 864-943 (944)
153 PF10309 DUF2414: Protein of u 97.4 0.0016 3.4E-08 36.4 6.7 57 60-118 3-62 (62)
154 KOG1996 mRNA splicing factor [ 97.4 0.00074 1.6E-08 48.8 6.3 59 76-134 300-365 (378)
155 KOG0153 Predicted RNA-binding 97.3 0.00025 5.4E-09 52.2 3.7 65 2-67 233-297 (377)
156 KOG2416 Acinus (induces apopto 97.2 0.00047 1E-08 54.1 4.3 79 56-135 438-521 (718)
157 PF08675 RNA_bind: RNA binding 97.2 0.0029 6.4E-08 37.3 6.6 60 58-119 4-63 (87)
158 KOG2314 Translation initiation 97.1 0.0066 1.4E-07 47.7 9.5 97 36-133 32-141 (698)
159 KOG4661 Hsp27-ERE-TATA-binding 97.1 0.001 2.2E-08 52.3 4.9 54 2-55 410-469 (940)
160 KOG2202 U2 snRNP splicing fact 96.9 0.00053 1.1E-08 48.5 2.1 57 78-134 84-146 (260)
161 PF04847 Calcipressin: Calcipr 96.8 0.008 1.7E-07 41.2 7.1 61 75-135 8-70 (184)
162 KOG0129 Predicted RNA-binding 96.5 0.0097 2.1E-07 46.2 6.3 60 58-118 255-326 (520)
163 KOG2193 IGF-II mRNA-binding pr 96.5 0.0027 5.9E-08 48.2 3.1 74 63-136 2-76 (584)
164 KOG4676 Splicing factor, argin 96.4 0.0087 1.9E-07 45.1 5.1 72 61-133 6-86 (479)
165 KOG4209 Splicing factor RNPS1, 96.3 0.0058 1.3E-07 43.4 3.7 53 2-55 106-164 (231)
166 KOG0151 Predicted splicing reg 96.2 0.0084 1.8E-07 48.4 4.6 54 2-55 179-241 (877)
167 PF08777 RRM_3: RNA binding mo 96.2 0.011 2.4E-07 36.8 4.2 53 3-55 7-59 (105)
168 KOG4285 Mitotic phosphoprotein 95.9 0.047 1E-06 39.9 6.8 68 65-134 200-268 (350)
169 KOG0128 RNA-binding protein SA 95.9 0.00021 4.5E-09 58.1 -5.5 97 35-131 616-742 (881)
170 PF14605 Nup35_RRM_2: Nup53/35 95.6 0.015 3.3E-07 31.4 2.7 39 12-50 15-53 (53)
171 KOG1995 Conserved Zn-finger pr 95.5 0.019 4.2E-07 42.7 3.8 57 2-58 71-141 (351)
172 KOG2135 Proteins containing th 95.5 0.01 2.2E-07 45.7 2.2 76 59-135 369-445 (526)
173 PF15023 DUF4523: Protein of u 94.9 0.38 8.2E-06 31.6 7.8 77 56-134 80-160 (166)
174 PF07292 NID: Nmi/IFP 35 domai 94.9 0.025 5.4E-07 33.9 2.2 49 36-84 1-74 (88)
175 PF07576 BRAP2: BRCA1-associat 94.8 0.56 1.2E-05 29.4 8.4 63 62-124 12-80 (110)
176 KOG0115 RNA-binding protein p5 94.5 0.083 1.8E-06 37.8 4.4 74 45-118 6-92 (275)
177 PF08675 RNA_bind: RNA binding 94.2 0.23 4.9E-06 29.5 5.2 44 6-54 17-63 (87)
178 PF03880 DbpA: DbpA RNA bindin 94.2 0.44 9.5E-06 27.5 6.5 59 72-133 11-74 (74)
179 PF03467 Smg4_UPF3: Smg-4/UPF3 94.1 0.078 1.7E-06 36.1 3.6 76 60-135 5-97 (176)
180 KOG4849 mRNA cleavage factor I 94.0 0.03 6.4E-07 41.8 1.4 72 60-131 78-157 (498)
181 KOG0112 Large RNA-binding prot 93.9 0.017 3.7E-07 47.8 0.2 77 58-134 368-449 (975)
182 KOG0804 Cytoplasmic Zn-finger 93.8 0.3 6.4E-06 37.8 6.4 65 60-124 72-141 (493)
183 KOG2068 MOT2 transcription fac 93.8 0.027 5.9E-07 41.6 1.0 77 60-136 75-163 (327)
184 PF07576 BRAP2: BRCA1-associat 93.7 0.46 1E-05 29.8 6.3 65 6-72 22-97 (110)
185 KOG4574 RNA-binding protein (c 93.7 0.056 1.2E-06 44.7 2.6 73 63-135 299-373 (1007)
186 KOG2591 c-Mpl binding protein, 93.6 0.35 7.6E-06 38.5 6.7 73 59-132 172-248 (684)
187 KOG4210 Nuclear localization s 93.5 0.032 6.9E-07 41.0 1.0 50 2-51 190-245 (285)
188 KOG1855 Predicted RNA-binding 93.0 0.053 1.2E-06 41.5 1.4 54 2-55 236-308 (484)
189 KOG4849 mRNA cleavage factor I 92.9 0.17 3.7E-06 37.9 3.8 64 2-65 85-156 (498)
190 KOG2314 Translation initiation 92.5 0.23 5E-06 39.5 4.3 27 29-55 101-127 (698)
191 KOG2253 U1 snRNP complex, subu 91.9 0.14 3.1E-06 41.2 2.7 74 56-132 34-107 (668)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 91.2 0.27 5.7E-06 33.6 3.1 54 2-55 12-77 (176)
193 PF11767 SET_assoc: Histone ly 90.7 1.9 4.2E-05 24.4 6.6 55 73-130 11-65 (66)
194 KOG2591 c-Mpl binding protein, 90.1 0.43 9.3E-06 38.0 3.6 52 3-55 181-234 (684)
195 PF05172 Nup35_RRM: Nup53/35/4 88.5 0.68 1.5E-05 28.5 3.1 47 4-51 13-72 (100)
196 KOG4019 Calcineurin-mediated s 87.9 0.75 1.6E-05 31.4 3.2 74 63-136 11-90 (193)
197 KOG0804 Cytoplasmic Zn-finger 86.4 3 6.6E-05 32.5 6.0 64 3-68 80-154 (493)
198 KOG4410 5-formyltetrahydrofola 86.1 2.8 6E-05 30.8 5.4 50 60-109 328-378 (396)
199 PF10309 DUF2414: Protein of u 84.6 3.9 8.5E-05 22.8 4.5 40 7-53 14-62 (62)
200 KOG2318 Uncharacterized conser 84.0 9.3 0.0002 30.9 7.8 75 58-132 170-304 (650)
201 KOG0115 RNA-binding protein p5 83.4 3.3 7.2E-05 29.9 4.8 52 2-53 36-92 (275)
202 PF10567 Nab6_mRNP_bdg: RNA-re 80.2 6.2 0.00013 29.1 5.3 77 58-134 11-106 (309)
203 KOG2202 U2 snRNP splicing fact 77.9 1.2 2.6E-05 32.1 1.1 26 31-56 108-133 (260)
204 KOG2416 Acinus (induces apopto 76.2 1.3 2.9E-05 35.6 1.1 65 2-66 449-515 (718)
205 KOG4483 Uncharacterized conser 75.9 4.7 0.0001 31.1 3.8 67 2-81 396-467 (528)
206 KOG2891 Surface glycoprotein [ 73.4 13 0.00028 27.4 5.4 40 56-95 143-194 (445)
207 PRK11634 ATP-dependent RNA hel 71.9 37 0.00079 28.2 8.3 60 72-134 497-561 (629)
208 KOG3152 TBP-binding protein, a 68.6 1.7 3.7E-05 31.3 0.1 59 2-60 79-155 (278)
209 KOG4285 Mitotic phosphoprotein 62.9 12 0.00025 27.9 3.4 38 14-51 213-250 (350)
210 KOG4483 Uncharacterized conser 60.7 25 0.00055 27.3 4.9 56 61-117 390-446 (528)
211 PRK14548 50S ribosomal protein 59.7 35 0.00076 20.3 5.4 51 67-117 25-80 (84)
212 COG5175 MOT2 Transcriptional r 59.2 13 0.00029 28.1 3.2 19 37-55 169-187 (480)
213 PF02714 DUF221: Domain of unk 57.4 22 0.00047 26.5 4.3 47 36-82 1-54 (325)
214 KOG1996 mRNA splicing factor [ 56.9 11 0.00024 28.0 2.4 22 35-56 331-352 (378)
215 PF15513 DUF4651: Domain of un 55.1 36 0.00078 19.0 3.9 19 77-95 9-27 (62)
216 PHA01632 hypothetical protein 54.0 16 0.00034 19.8 2.2 20 66-85 20-39 (64)
217 TIGR03636 L23_arch archaeal ri 51.8 47 0.001 19.4 5.5 53 65-117 16-73 (77)
218 PF12829 Mhr1: Transcriptional 50.0 57 0.0012 19.8 4.4 50 70-119 20-72 (91)
219 KOG2318 Uncharacterized conser 49.6 28 0.00061 28.4 3.8 50 35-84 270-320 (650)
220 COG0445 GidA Flavin-dependent 48.6 1.2E+02 0.0026 25.1 7.1 41 56-96 295-335 (621)
221 PF03439 Spt5-NGN: Early trans 46.6 56 0.0012 19.2 4.0 35 88-122 33-68 (84)
222 PF02714 DUF221: Domain of unk 45.6 37 0.0008 25.2 3.9 39 101-141 1-39 (325)
223 PF00403 HMA: Heavy-metal-asso 45.5 48 0.001 17.7 6.5 45 64-108 1-45 (62)
224 PF15023 DUF4523: Protein of u 42.5 38 0.00082 22.5 3.0 25 31-55 123-147 (166)
225 PF13689 DUF4154: Domain of un 39.8 1E+02 0.0022 20.0 4.9 57 76-134 2-61 (145)
226 PF03468 XS: XS domain; Inter 39.1 43 0.00094 21.2 2.9 44 64-107 10-65 (116)
227 PF14111 DUF4283: Domain of un 37.1 13 0.00028 24.2 0.3 65 32-96 54-139 (153)
228 KOG4410 5-formyltetrahydrofola 34.4 45 0.00098 24.8 2.7 42 2-44 335-378 (396)
229 KOG2295 C2H2 Zn-finger protein 33.7 9.5 0.00021 30.8 -0.9 69 61-129 230-304 (648)
230 KOG4008 rRNA processing protei 32.6 43 0.00093 24.1 2.3 39 56-94 34-72 (261)
231 KOG3424 40S ribosomal protein 31.1 1.3E+02 0.0029 19.2 4.0 41 7-48 33-84 (132)
232 PTZ00191 60S ribosomal protein 30.7 95 0.002 20.6 3.5 46 4-49 88-138 (145)
233 PF10281 Ish1: Putative stress 29.1 60 0.0013 15.8 1.9 17 73-89 3-19 (38)
234 PF11411 DNA_ligase_IV: DNA li 28.7 30 0.00065 17.0 0.7 15 7-21 19-33 (36)
235 PRK08559 nusG transcription an 28.2 1.8E+02 0.0039 19.2 5.5 33 89-121 36-69 (153)
236 PF15407 Spo7_2_N: Sporulation 28.2 24 0.00053 20.0 0.4 21 59-79 24-44 (67)
237 COG0150 PurM Phosphoribosylami 27.4 28 0.00062 26.4 0.7 46 76-121 275-322 (345)
238 cd06257 DnaJ DnaJ domain or J- 26.5 55 0.0012 16.8 1.6 19 2-20 5-23 (55)
239 COG5638 Uncharacterized conser 25.4 1.2E+02 0.0026 23.9 3.7 50 35-84 260-310 (622)
240 KOG1150 Predicted molecular ch 25.1 85 0.0018 22.2 2.6 27 2-28 58-84 (250)
241 KOG4365 Uncharacterized conser 24.9 8.9 0.00019 30.1 -2.3 72 64-136 5-82 (572)
242 KOG1295 Nonsense-mediated deca 24.7 1.2E+02 0.0026 23.5 3.6 63 61-123 6-77 (376)
243 COG2608 CopZ Copper chaperone 24.0 1.5E+02 0.0032 16.7 5.1 45 64-108 5-49 (71)
244 PF06014 DUF910: Bacterial pro 23.1 76 0.0017 17.7 1.7 18 75-92 3-20 (62)
245 PF06919 Phage_T4_Gp30_7: Phag 22.6 1.6E+02 0.0036 18.3 3.2 43 85-135 28-70 (121)
246 PF11823 DUF3343: Protein of u 22.5 1.6E+02 0.0034 16.5 3.6 25 99-123 2-26 (73)
247 PF00226 DnaJ: DnaJ domain; I 22.0 72 0.0016 17.1 1.6 20 2-21 5-24 (64)
248 smart00271 DnaJ DnaJ molecular 21.6 76 0.0016 16.7 1.6 18 2-19 6-23 (60)
249 cd07268 Glo_EDI_BRP_like_4 Thi 21.5 81 0.0017 21.0 1.9 30 41-70 10-44 (149)
250 PF14893 PNMA: PNMA 21.4 79 0.0017 24.1 2.1 27 59-85 15-41 (331)
251 KOG4574 RNA-binding protein (c 20.8 81 0.0018 27.2 2.2 53 3-55 304-356 (1007)
252 COG0030 KsgA Dimethyladenosine 20.2 1.8E+02 0.0039 21.3 3.7 28 62-89 95-122 (259)
253 COG5594 Uncharacterized integr 20.1 1.4E+02 0.003 25.7 3.4 47 33-80 357-403 (827)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=9.6e-30 Score=188.22 Aligned_cols=137 Identities=26% Similarity=0.497 Sum_probs=121.4
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC---------------CCCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKS 60 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~---------------~~~~~ 60 (155)
|.|||.++||++|+++|. +++++.+..++.++|||||+|.+.++|++|++.|++ .....
T Consensus 112 VgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~ 191 (346)
T TIGR01659 112 VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESI 191 (346)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccccccc
Confidence 679999999999999999 567778888899999999999999999999999988 11234
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEe
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSW 132 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~ 132 (155)
...+|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|++.|++..+.+ +.|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 5678999999999999999999999999999988753 5899999999999999999999998865 7899999
Q ss_pred ccCCCC
Q 038175 133 GHNPGN 138 (155)
Q Consensus 133 ~~~~~~ 138 (155)
++....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 976433
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.2e-28 Score=170.91 Aligned_cols=135 Identities=36% Similarity=0.640 Sum_probs=127.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|--|..+++-++|++.|. ++++++|..+++++|||||.|.+.++|+.|+..|+|
T Consensus 67 vgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~ 146 (321)
T KOG0148|consen 67 VGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEM 146 (321)
T ss_pred ehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCcccc
Confidence 345788999999999998 889999999999999999999999999999999999
Q ss_pred -----------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeC
Q 038175 56 -----------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIG 124 (155)
Q Consensus 56 -----------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 124 (155)
-...+++++||++|++..+++++|++.|++||.|..|++.+.+||+||.|++.|.|..||..+|+.+++
T Consensus 147 n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 147 NGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred CCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeC
Confidence 344678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 038175 125 KQTVRLSWGHNP 136 (155)
Q Consensus 125 g~~l~v~~~~~~ 136 (155)
|..+++.|.+..
T Consensus 227 G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 227 GQLVRCSWGKEG 238 (321)
T ss_pred ceEEEEeccccC
Confidence 999999999863
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=2.2e-27 Score=184.54 Aligned_cols=138 Identities=22% Similarity=0.455 Sum_probs=122.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC------------C-------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------S------- 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------~------- 56 (155)
|.|||.++++++|+++|. ++.++++..++.++|||||+|.+.++|++|+..++| +
T Consensus 112 VGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~ 191 (612)
T TIGR01645 112 VGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQ 191 (612)
T ss_pred EcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccc
Confidence 689999999999999999 567778888899999999999999999999999988 0
Q ss_pred -------CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCee
Q 038175 57 -------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 57 -------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
.......+|||+|||..+++++|+++|+.||.|..+++.+ .+|||||+|.+.++|..|+..||+..+
T Consensus 192 ~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~el 271 (612)
T TIGR01645 192 PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL 271 (612)
T ss_pred cccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCee
Confidence 0112347899999999999999999999999999999875 379999999999999999999999999
Q ss_pred CCeEEEEEeccCCCCC
Q 038175 124 GKQTVRLSWGHNPGNK 139 (155)
Q Consensus 124 ~g~~l~v~~~~~~~~~ 139 (155)
+|+.|+|.++.++...
T Consensus 272 gGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 272 GGQYLRVGKCVTPPDA 287 (612)
T ss_pred CCeEEEEEecCCCccc
Confidence 9999999999765333
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1e-27 Score=176.07 Aligned_cols=137 Identities=26% Similarity=0.474 Sum_probs=125.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|--||.++.|++|..+|. +.+++.++.+|.++|||||.|.+.+.|++|++.||+
T Consensus 88 vGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RL 167 (506)
T KOG0117|consen 88 VGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRL 167 (506)
T ss_pred ecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeeccee
Confidence 345899999999999999 788999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q 038175 56 -------------------------------------------------------------------------------- 55 (155)
Q Consensus 56 -------------------------------------------------------------------------------- 55 (155)
T Consensus 168 FiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep 247 (506)
T KOG0117|consen 168 FIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEP 247 (506)
T ss_pred EeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCc
Confidence
Q ss_pred -----CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 56 -----SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 56 -----~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
.......+.|||.||+.+++++.|+.+|++||.|.+|+.+ +.||||.|.++++|.+|++.++|.++.|..|.|
T Consensus 248 ~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--rDYaFVHf~eR~davkAm~~~ngkeldG~~iEv 325 (506)
T KOG0117|consen 248 EEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--RDYAFVHFAEREDAVKAMKETNGKELDGSPIEV 325 (506)
T ss_pred ccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc--cceeEEeecchHHHHHHHHHhcCceecCceEEE
Confidence 2344567899999999999999999999999999999888 669999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 038175 131 SWGHNPGNKQ 140 (155)
Q Consensus 131 ~~~~~~~~~~ 140 (155)
.+++++..++
T Consensus 326 tLAKP~~k~k 335 (506)
T KOG0117|consen 326 TLAKPVDKKK 335 (506)
T ss_pred EecCChhhhc
Confidence 9999865544
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.1e-26 Score=180.34 Aligned_cols=135 Identities=24% Similarity=0.404 Sum_probs=120.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|.|||.+++|++|+++|+ +++++++ .++.++|||||+|.+.++|++|++.|++
T Consensus 63 VgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rL 141 (578)
T TIGR01648 63 VGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRL 141 (578)
T ss_pred eCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccCcee
Confidence 679999999999999999 6677778 6899999999999999999999999876
Q ss_pred --------------------------------------------------------------------------------
Q 038175 56 -------------------------------------------------------------------------------- 55 (155)
Q Consensus 56 -------------------------------------------------------------------------------- 55 (155)
T Consensus 142 FVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p 221 (578)
T TIGR01648 142 FVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEP 221 (578)
T ss_pred EeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecc
Confidence
Q ss_pred -----CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEE
Q 038175 56 -----SDGKSNNATIFVGALDSNVSDKDLRELFSHF--GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128 (155)
Q Consensus 56 -----~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l 128 (155)
+......++|||+|||..+++++|+++|++| |.|.++.+. +++|||+|.+.++|++|++.|++..|.|+.|
T Consensus 222 ~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I 299 (578)
T TIGR01648 222 EEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEI 299 (578)
T ss_pred cccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 0011235789999999999999999999999 999999887 6799999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 038175 129 RLSWGHNPGNK 139 (155)
Q Consensus 129 ~v~~~~~~~~~ 139 (155)
+|+|++++...
T Consensus 300 ~V~~Akp~~~~ 310 (578)
T TIGR01648 300 EVTLAKPVDKK 310 (578)
T ss_pred EEEEccCCCcc
Confidence 99999876443
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=3.2e-26 Score=171.03 Aligned_cols=136 Identities=32% Similarity=0.529 Sum_probs=118.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC----------------C-
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD----------------G- 58 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~----------------~- 58 (155)
|.|||.++++++|+++|. .+.++.+..++.++|||||+|.+.++|+.|+..|+|.. .
T Consensus 94 v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 94 VSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred ECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCc
Confidence 679999999999999999 34556666677899999999999999999999988700 0
Q ss_pred --------------------------------------------------------------------------------
Q 038175 59 -------------------------------------------------------------------------------- 58 (155)
Q Consensus 59 -------------------------------------------------------------------------------- 58 (155)
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (352)
T TIGR01661 174 SNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQT 253 (352)
T ss_pred CCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccc
Confidence
Q ss_pred ------------CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcC
Q 038175 59 ------------KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQG 120 (155)
Q Consensus 59 ------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~ 120 (155)
.....+|||+|||..+++++|+++|++||.|..+++.. ++|+|||+|.+.++|..|+..|||
T Consensus 254 ~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG 333 (352)
T TIGR01661 254 AGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNG 333 (352)
T ss_pred cccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCC
Confidence 01122599999999999999999999999999999875 379999999999999999999999
Q ss_pred CeeCCeEEEEEeccCCC
Q 038175 121 TAIGKQTVRLSWGHNPG 137 (155)
Q Consensus 121 ~~~~g~~l~v~~~~~~~ 137 (155)
..++|+.|+|.|..+..
T Consensus 334 ~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 334 YTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CEECCeEEEEEEccCCC
Confidence 99999999999987754
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=2.3e-26 Score=171.77 Aligned_cols=136 Identities=28% Similarity=0.573 Sum_probs=120.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC---------------CCCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKS 60 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~---------------~~~~~ 60 (155)
|.|||.++||++|+++|+ ++.++.+..++.++|||||+|.+.++|.+|+..+++ .....
T Consensus 8 V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~ 87 (352)
T TIGR01661 8 VNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSI 87 (352)
T ss_pred EeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccccc
Confidence 789999999999999999 677788888899999999999999999999999988 22234
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEe
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSW 132 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~ 132 (155)
...+|||+|||..+++++|+.+|++||.|..+.+.. .+|+|||+|.+.++|+.|++.|+|..+.| ..|.|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 677899999999999999999999999999888764 36899999999999999999999998876 6789999
Q ss_pred ccCCC
Q 038175 133 GHNPG 137 (155)
Q Consensus 133 ~~~~~ 137 (155)
+..+.
T Consensus 168 a~~~~ 172 (352)
T TIGR01661 168 ANNPS 172 (352)
T ss_pred CCCCC
Confidence 87554
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=1.6e-25 Score=172.45 Aligned_cols=133 Identities=26% Similarity=0.499 Sum_probs=118.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|.|||.++++++|+++|. .+.++.+..++.++|||||+|.+.++|.+|+. ++|
T Consensus 94 V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~ 172 (457)
T TIGR01622 94 VLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKNRA 172 (457)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhhhhh
Confidence 679999999999999999 66777888889999999999999999999996 555
Q ss_pred -------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCe
Q 038175 56 -------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTA 122 (155)
Q Consensus 56 -------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~ 122 (155)
....+...+|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|..|+..|+|..
T Consensus 173 ~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~ 252 (457)
T TIGR01622 173 AKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFE 252 (457)
T ss_pred hhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcE
Confidence 01113358999999999999999999999999999998874 36899999999999999999999999
Q ss_pred eCCeEEEEEeccC
Q 038175 123 IGKQTVRLSWGHN 135 (155)
Q Consensus 123 ~~g~~l~v~~~~~ 135 (155)
+.|+.|+|.|+..
T Consensus 253 i~g~~i~v~~a~~ 265 (457)
T TIGR01622 253 LAGRPIKVGYAQD 265 (457)
T ss_pred ECCEEEEEEEccC
Confidence 9999999999763
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6.5e-26 Score=156.96 Aligned_cols=138 Identities=30% Similarity=0.575 Sum_probs=124.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC---------------CCCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKS 60 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~---------------~~~~~ 60 (155)
|..||.++|+++|+.+|. +|++++|..+|++.||+||-|.+++||++|+..++| ....+
T Consensus 46 vNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~I 125 (360)
T KOG0145|consen 46 VNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSI 125 (360)
T ss_pred eeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhh
Confidence 457899999999999999 789999999999999999999999999999999999 45667
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCe--EEEEEe
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQ--TVRLSW 132 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~--~l~v~~ 132 (155)
....|||.+||..++..+|.++|++||.|...++.. ++|.+||.|+...+|+.||..|+|.+..|+ +|.|.|
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 889999999999999999999999999987766543 489999999999999999999999987664 799999
Q ss_pred ccCCCCC
Q 038175 133 GHNPGNK 139 (155)
Q Consensus 133 ~~~~~~~ 139 (155)
+..+..+
T Consensus 206 annPsq~ 212 (360)
T KOG0145|consen 206 ANNPSQK 212 (360)
T ss_pred cCCcccc
Confidence 9876543
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.8e-25 Score=162.05 Aligned_cols=139 Identities=26% Similarity=0.478 Sum_probs=123.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC----------------CCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------SDGK 59 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~----------------~~~~ 59 (155)
|--||..++|.||+++|+ ++-+++|+.++.++|||||.|.+.++|.+|+..|++ ..+.
T Consensus 39 VgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~ 118 (510)
T KOG0144|consen 39 VGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGER 118 (510)
T ss_pred eccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhh
Confidence 556899999999999999 788999999999999999999999999999999887 1112
Q ss_pred ---CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCe-eCC--eEE
Q 038175 60 ---SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTA-IGK--QTV 128 (155)
Q Consensus 60 ---~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~-~~g--~~l 128 (155)
...++|||+-|+...+|.+++.+|++||.|+.+.+.+ ++|++||.|.+.+.|..||+.|||.. +.| .+|
T Consensus 119 er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PL 198 (510)
T KOG0144|consen 119 ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPL 198 (510)
T ss_pred hccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCce
Confidence 3478999999999999999999999999999999987 48999999999999999999999974 554 589
Q ss_pred EEEeccCCCCCC
Q 038175 129 RLSWGHNPGNKQ 140 (155)
Q Consensus 129 ~v~~~~~~~~~~ 140 (155)
.|+|+.++..+.
T Consensus 199 VVkFADtqkdk~ 210 (510)
T KOG0144|consen 199 VVKFADTQKDKD 210 (510)
T ss_pred EEEecccCCCch
Confidence 999998765544
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=2.5e-24 Score=169.53 Aligned_cols=135 Identities=33% Similarity=0.492 Sum_probs=119.7
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC-----------------CC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-----------------DG 58 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-----------------~~ 58 (155)
|.|||.++||++|+++|+ +++++++..++.++|||||+|.+.++|++|+..+++. ..
T Consensus 5 VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~ 84 (562)
T TIGR01628 5 VGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLR 84 (562)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccccc
Confidence 679999999999999998 6677888888899999999999999999999998871 11
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
.....+|||+|||.++++++|+++|+.||.|..+++.. ++|+|||+|.+.++|..|+..++|..+.|+.|.|...
T Consensus 85 ~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~ 164 (562)
T TIGR01628 85 RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRF 164 (562)
T ss_pred ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecc
Confidence 23456799999999999999999999999999998864 4789999999999999999999999999999999776
Q ss_pred cCC
Q 038175 134 HNP 136 (155)
Q Consensus 134 ~~~ 136 (155)
...
T Consensus 165 ~~~ 167 (562)
T TIGR01628 165 IKK 167 (562)
T ss_pred ccc
Confidence 543
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=9e-24 Score=164.68 Aligned_cols=133 Identities=18% Similarity=0.354 Sum_probs=113.0
Q ss_pred cccCCCCCCHHHHHhhccc------------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------
Q 038175 2 GYCQVSDITNSILQETFSR------------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~------------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------- 55 (155)
|.|||.++|+++|.++|.. ...+........+|||||+|.+.++|..|| .|+|
T Consensus 180 VgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 180 VGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIRRPH 258 (509)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEecCcc
Confidence 7899999999999999983 223344444567899999999999999999 4666
Q ss_pred --C-C---------------------------CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCc
Q 038175 56 --S-D---------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKG 99 (155)
Q Consensus 56 --~-~---------------------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g 99 (155)
. . ......+|||+|||..+++++|+++|+.||.|..+.+.. ++|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g 338 (509)
T TIGR01642 259 DYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKG 338 (509)
T ss_pred ccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCe
Confidence 0 0 012346899999999999999999999999999988764 379
Q ss_pred EEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 100 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 100 ~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
+|||+|.+.+.|..|+..|+|..++|+.|.|.++..
T Consensus 339 ~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 339 YAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 999999999999999999999999999999999864
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=1.4e-23 Score=165.26 Aligned_cols=134 Identities=32% Similarity=0.581 Sum_probs=117.2
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD------------------ 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~------------------ 57 (155)
|.|||.++|+++|+++|. ++.++.+ .++.++|||||+|.+.++|.+|++.+++..
T Consensus 183 V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 183 VKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred EeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccCh
Confidence 579999999999999999 3445555 357889999999999999999999887711
Q ss_pred -------------------CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHH
Q 038175 58 -------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEV 113 (155)
Q Consensus 58 -------------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~ 113 (155)
......+|||+||+..+++++|+++|++||.|..+++.. ++|+|||+|.+.++|.+
T Consensus 262 ~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~ 341 (562)
T TIGR01628 262 AEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANR 341 (562)
T ss_pred hhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHH
Confidence 123457899999999999999999999999999998865 36999999999999999
Q ss_pred HHHHhcCCeeCCeEEEEEeccCC
Q 038175 114 ALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 114 a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
|+..|+|..++|++|.|.++...
T Consensus 342 A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 342 AVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HHHHhcCCeeCCceeEEEeccCc
Confidence 99999999999999999998753
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=5.4e-23 Score=159.16 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=109.3
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHh--cC--------------CCC-------
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEM--NG--------------SDG------- 58 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~~--------------~~~------- 58 (155)
|.|||.++||++|+++|..++.+.....-.+++||||+|.+.++|+.|+..+ ++ ...
T Consensus 7 V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~ 86 (481)
T TIGR01649 7 VRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNS 86 (481)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCC
Confidence 7899999999999999994433333322245789999999999999999864 33 000
Q ss_pred ------CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCC--cEEEEEecCHHHHHHHHHHhcCCeeCC--eEE
Q 038175 59 ------KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK--GCGFVQFANRKDAEVALQKLQGTAIGK--QTV 128 (155)
Q Consensus 59 ------~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~--g~~~v~f~~~~~a~~a~~~l~~~~~~g--~~l 128 (155)
.....+|+|+||+..+++++|+++|++||.|.++.+.++. ++|||+|.+.++|.+|++.|||..+.+ +.|
T Consensus 87 ~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l 166 (481)
T TIGR01649 87 DFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTL 166 (481)
T ss_pred cccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEE
Confidence 0112378999999999999999999999999999887654 589999999999999999999999854 689
Q ss_pred EEEeccC
Q 038175 129 RLSWGHN 135 (155)
Q Consensus 129 ~v~~~~~ 135 (155)
+|.|++.
T Consensus 167 ~v~~sk~ 173 (481)
T TIGR01649 167 KIEYAKP 173 (481)
T ss_pred EEEEecC
Confidence 9999875
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=2.9e-22 Score=155.12 Aligned_cols=130 Identities=21% Similarity=0.320 Sum_probs=110.2
Q ss_pred cccCCC-CCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-------------------
Q 038175 2 GYCQVS-DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------- 55 (155)
Q Consensus 2 v~nlp~-~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------------- 55 (155)
|+|||. .+|+++|.++|+ .+.++.+ .+|+|||+|.+.++|..|+..|++
T Consensus 280 v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~ 354 (481)
T TIGR01649 280 VSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQ 354 (481)
T ss_pred EeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccccc
Confidence 689997 699999999999 3333332 468999999999999999999988
Q ss_pred -CCC--------------------------------CCCCcEEEEcCCCCCCCHHHHHHHhhccCC--eEEEEeeCC---
Q 038175 56 -SDG--------------------------------KSNNATIFVGALDSNVSDKDLRELFSHFGE--ILSVKIPVG--- 97 (155)
Q Consensus 56 -~~~--------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~~~--- 97 (155)
+.. .++..+|||+|||..+++++|+++|++||. +..+++...
T Consensus 355 ~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~ 434 (481)
T TIGR01649 355 PPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE 434 (481)
T ss_pred CCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC
Confidence 000 013468999999999999999999999998 888887643
Q ss_pred -CcEEEEEecCHHHHHHHHHHhcCCeeCCeE------EEEEeccCC
Q 038175 98 -KGCGFVQFANRKDAEVALQKLQGTAIGKQT------VRLSWGHNP 136 (155)
Q Consensus 98 -~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~------l~v~~~~~~ 136 (155)
+++|||+|.+.++|..|+..||+..+.++. |+|+|++++
T Consensus 435 ~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 435 RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 589999999999999999999999999885 999999764
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.9e-22 Score=138.97 Aligned_cols=135 Identities=30% Similarity=0.529 Sum_probs=123.4
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|+-||..+|..+|+++|+ ..+++.+..++.++|.|||.|...++|+.|+..++|
T Consensus 132 vSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 132 VSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred EecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 567899999999999999 456777778899999999999999999999999999
Q ss_pred ------------------------------------------------------------CCCCCCCcEEEEcCCCCCCC
Q 038175 56 ------------------------------------------------------------SDGKSNNATIFVGALDSNVS 75 (155)
Q Consensus 56 ------------------------------------------------------------~~~~~~~~~l~v~~l~~~~~ 75 (155)
+........|||.||..+..
T Consensus 212 ~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~d 291 (360)
T KOG0145|consen 212 KTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDAD 291 (360)
T ss_pred ccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCch
Confidence 44456789999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 76 DKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 76 ~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
+..|+++|.+||.|..+++.++ +||+||.+.+.++|..||..|+|..++++.|.|+|..++
T Consensus 292 e~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 292 ESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999874 799999999999999999999999999999999997654
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=8.4e-22 Score=153.65 Aligned_cols=134 Identities=21% Similarity=0.357 Sum_probs=113.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|.|||..+|+++|+++|. .+.++.+..++.++|||||+|.+.++|..|+..|+|
T Consensus 300 v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~ 379 (509)
T TIGR01642 300 IGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQA 379 (509)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCC
Confidence 679999999999999999 456677777899999999999999999999999988
Q ss_pred --C-C--------------------CCCCCcEEEEcCCCCC--C--------CHHHHHHHhhccCCeEEEEeeCC-----
Q 038175 56 --S-D--------------------GKSNNATIFVGALDSN--V--------SDKDLRELFSHFGEILSVKIPVG----- 97 (155)
Q Consensus 56 --~-~--------------------~~~~~~~l~v~~l~~~--~--------~~~~l~~~f~~~g~v~~~~~~~~----- 97 (155)
. . ......+|++.|+... + ..++|++.|++||.|..|.+++.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~ 459 (509)
T TIGR01642 380 TIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRN 459 (509)
T ss_pred CccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCC
Confidence 0 0 0124567888888642 1 12578999999999999998753
Q ss_pred ----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 98 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 98 ----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
.|++||+|.+.++|+.|+..|+|..|.|+.|.|.|...
T Consensus 460 ~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 460 STPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 48899999999999999999999999999999999754
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=9.5e-22 Score=147.99 Aligned_cols=134 Identities=30% Similarity=0.490 Sum_probs=120.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|++||+.++.++|.++|+ .+.++.+..++.++|||||.|.-.+++++|+.+..+
T Consensus 10 V~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e 89 (678)
T KOG0127|consen 10 VSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSE 89 (678)
T ss_pred EecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccch
Confidence 789999999999999999 567777877788999999999999999999987655
Q ss_pred ---------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHH
Q 038175 56 ---------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRK 109 (155)
Q Consensus 56 ---------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~ 109 (155)
........+|.|.|||..+...+|+.+|+.||.|..+.|++. +|||||+|....
T Consensus 90 ~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~ 169 (678)
T KOG0127|consen 90 EVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKK 169 (678)
T ss_pred hcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHH
Confidence 011234789999999999999999999999999999999863 599999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 110 DAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 110 ~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
+|..|++.+++.+++|++|-|.|+-+
T Consensus 170 dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 170 DAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred HHHHHHHhccCceecCceeEEeeecc
Confidence 99999999999999999999999854
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.84 E-value=1.1e-20 Score=124.60 Aligned_cols=139 Identities=27% Similarity=0.454 Sum_probs=118.9
Q ss_pred cccCCCCCCHHHHHhhccc------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC----------------CCCC
Q 038175 2 GYCQVSDITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------SDGK 59 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~----------------~~~~ 59 (155)
|-||+..++++-|.++|-. +.+.++..+...+||||++|.+.++|+-|++-|+. ....
T Consensus 14 vgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl 93 (203)
T KOG0131|consen 14 VGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNL 93 (203)
T ss_pred EecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccc
Confidence 5689999999999999993 45666766777899999999999999999987766 3455
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSV-KIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
..+..|||+||...+.+..|.+.|+.||.+... ++.+ +++++||.|++.+.+.+|+..++|+.++.+++.|+|
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 667899999999999999999999999987663 2222 368999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 038175 133 GHNPGNKQ 140 (155)
Q Consensus 133 ~~~~~~~~ 140 (155)
+.....+.
T Consensus 174 a~k~~~kg 181 (203)
T KOG0131|consen 174 AFKKDTKG 181 (203)
T ss_pred EEecCCCc
Confidence 97665544
No 20
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=1e-20 Score=132.90 Aligned_cols=132 Identities=20% Similarity=0.380 Sum_probs=116.1
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-------------CCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------SDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------~~~~~~~~~l~v~ 68 (155)
|-|||.++++++|+.+|..+..+.... .-|.||||..++...|+.|+..|++ +.......+|+|+
T Consensus 7 IGNLp~~~~~~elr~lFe~ygkVlECD--IvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~vg 84 (346)
T KOG0109|consen 7 IGNLPREATEQELRSLFEQYGKVLECD--IVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLHVG 84 (346)
T ss_pred ccCCCcccchHHHHHHHHhhCceEeee--eecccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccccC
Confidence 579999999999999999433333322 2235999999999999999998887 4556688999999
Q ss_pred CCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 038175 69 ALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137 (155)
Q Consensus 69 ~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 137 (155)
|+....+-.+++..|.+||.|..+.+. ++++||.|+-.++|..|++.|++.++.|+.++|+.+++.-
T Consensus 85 Nis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 85 NISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred CCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 999999999999999999999999999 7899999999999999999999999999999999998753
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.84 E-value=2.5e-19 Score=138.16 Aligned_cols=134 Identities=24% Similarity=0.400 Sum_probs=112.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-----------C--------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------S-------- 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-----------~-------- 56 (155)
|.|||.++|+++|.++|. .+.++.+..++.++|||||+|.+.++|..|+..|+| .
T Consensus 191 v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~ 270 (457)
T TIGR01622 191 VGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLL 270 (457)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccc
Confidence 679999999999999999 456677777788999999999999999999998887 0
Q ss_pred ----------------------------------C---------------------------------------------
Q 038175 57 ----------------------------------D--------------------------------------------- 57 (155)
Q Consensus 57 ----------------------------------~--------------------------------------------- 57 (155)
.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (457)
T TIGR01622 271 DAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARN 350 (457)
T ss_pred cchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCC
Confidence 0
Q ss_pred -------CCCCCcEEEEcCCCCCCC----------HHHHHHHhhccCCeEEEEee--CCCcEEEEEecCHHHHHHHHHHh
Q 038175 58 -------GKSNNATIFVGALDSNVS----------DKDLRELFSHFGEILSVKIP--VGKGCGFVQFANRKDAEVALQKL 118 (155)
Q Consensus 58 -------~~~~~~~l~v~~l~~~~~----------~~~l~~~f~~~g~v~~~~~~--~~~g~~~v~f~~~~~a~~a~~~l 118 (155)
.......|+|.|+..... .+||++.|++||.|..+.+. ...|++||+|.+.++|..|++.|
T Consensus 351 ~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~l 430 (457)
T TIGR01622 351 SFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQAL 430 (457)
T ss_pred CCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHh
Confidence 012345666777744433 36799999999999999886 34799999999999999999999
Q ss_pred cCCeeCCeEEEEEeccC
Q 038175 119 QGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 119 ~~~~~~g~~l~v~~~~~ 135 (155)
+|..++|+.|.+.|...
T Consensus 431 nGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 431 NGRYFGGKMITAAFVVN 447 (457)
T ss_pred cCcccCCeEEEEEEEcH
Confidence 99999999999999754
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=5.4e-19 Score=133.30 Aligned_cols=133 Identities=23% Similarity=0.404 Sum_probs=111.4
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
+.|||+.+.+.+|..+|+ ++.|++.. .+...|||||.|....+|..|++.+|+
T Consensus 122 IRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 122 IRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred eecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 579999999999999999 44444333 455669999999999999999999888
Q ss_pred --------------------------------------------------------------------------------
Q 038175 56 -------------------------------------------------------------------------------- 55 (155)
Q Consensus 56 -------------------------------------------------------------------------------- 55 (155)
T Consensus 201 ~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~ 280 (678)
T KOG0127|consen 201 DTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKA 280 (678)
T ss_pred ccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchh
Confidence
Q ss_pred -----CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHh-----c
Q 038175 56 -----SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKL-----Q 119 (155)
Q Consensus 56 -----~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l-----~ 119 (155)
........+|||.|||+++++++|...|++||.|.++.+.. ++|.|||.|.+..+|+.||... .
T Consensus 281 q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~ 360 (678)
T KOG0127|consen 281 QNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASED 360 (678)
T ss_pred ccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCC
Confidence 11122348999999999999999999999999999988764 4799999999999999999876 2
Q ss_pred C-CeeCCeEEEEEeccC
Q 038175 120 G-TAIGKQTVRLSWGHN 135 (155)
Q Consensus 120 ~-~~~~g~~l~v~~~~~ 135 (155)
| ..+.|+.|+|..+-.
T Consensus 361 g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 361 GSVLLDGRLLKVTLAVT 377 (678)
T ss_pred ceEEEeccEEeeeeccc
Confidence 3 568999999998743
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.2e-18 Score=130.16 Aligned_cols=131 Identities=31% Similarity=0.515 Sum_probs=114.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC----------CCCCCCCcEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------SDGKSNNATI 65 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~----------~~~~~~~~~l 65 (155)
+..+.+++||..|.++|+ ++++.++. + +.|||||.|.++++|++||.+++. .....+...+
T Consensus 3 sl~vg~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~ 79 (369)
T KOG0123|consen 3 SLYVGPDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLV 79 (369)
T ss_pred ceecCCcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCcee
Confidence 345569999999999999 78888887 5 999999999999999999999877 2223334449
Q ss_pred EEcCCCCCCCHHHHHHHhhccCCeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 66 FVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 66 ~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
||.||+..++..+|.++|+.||.|..|++.. .+|+ ||+|++.+.|.+|+..++|..+.|++|.|......
T Consensus 80 ~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 80 FIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 9999999999999999999999999999975 3788 99999999999999999999999999999877553
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.2e-19 Score=129.97 Aligned_cols=133 Identities=23% Similarity=0.451 Sum_probs=120.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|-.|..+..|+.|+..|. ++.+-|++.+++.+|||||+|+-++.|+.|++.|||
T Consensus 118 VGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQ 197 (544)
T KOG0124|consen 118 VGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQ 197 (544)
T ss_pred eeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccc
Confidence 456788999999999998 778889999999999999999999999999999998
Q ss_pred ------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCee
Q 038175 56 ------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 56 ------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
..+...-.++||..+..+++++||+..|+.||.|.+|.+.+ .+||+||+|.+..+.+.|+..||-..+
T Consensus 198 piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL 277 (544)
T KOG0124|consen 198 PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL 277 (544)
T ss_pred hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc
Confidence 12233567899999999999999999999999999999976 379999999999999999999999999
Q ss_pred CCeEEEEEecc
Q 038175 124 GKQTVRLSWGH 134 (155)
Q Consensus 124 ~g~~l~v~~~~ 134 (155)
+|..|+|.-+-
T Consensus 278 GGQyLRVGk~v 288 (544)
T KOG0124|consen 278 GGQYLRVGKCV 288 (544)
T ss_pred ccceEeccccc
Confidence 99999998764
No 25
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=7.1e-18 Score=110.92 Aligned_cols=78 Identities=27% Similarity=0.623 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
....++|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999998874 379999999999999999999999999999999999
Q ss_pred ccCC
Q 038175 133 GHNP 136 (155)
Q Consensus 133 ~~~~ 136 (155)
++.+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 9754
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.79 E-value=9.5e-19 Score=135.21 Aligned_cols=136 Identities=25% Similarity=0.470 Sum_probs=116.7
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCC---CCCCcceEEEEeCCHHHHHHHHHHhcC-----------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSN---TGHTKGYGFVRFGDENERSRAMIEMNG----------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~~~~----------------- 55 (155)
|.||++++|.++|...|. ++.|..... .-.|.|||||+|.+.++|+.|++.|+|
T Consensus 520 vkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~ 599 (725)
T KOG0110|consen 520 VKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKP 599 (725)
T ss_pred hhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcc
Confidence 569999999999999999 333332221 124679999999999999999999987
Q ss_pred -------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCe
Q 038175 56 -------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTA 122 (155)
Q Consensus 56 -------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~ 122 (155)
.........|+|.|+|+..+..+++.+|..||.+..+++++. +|+|||+|-++.+|.+|+..|.++.
T Consensus 600 ~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STH 679 (725)
T KOG0110|consen 600 ASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTH 679 (725)
T ss_pred ccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccc
Confidence 122334679999999999999999999999999999999873 7999999999999999999999999
Q ss_pred eCCeEEEEEeccCCC
Q 038175 123 IGKQTVRLSWGHNPG 137 (155)
Q Consensus 123 ~~g~~l~v~~~~~~~ 137 (155)
+.|+.|.+.|++...
T Consensus 680 lyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 680 LYGRRLVLEWAKSDN 694 (725)
T ss_pred eechhhheehhccch
Confidence 999999999998754
No 27
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=5.2e-18 Score=118.35 Aligned_cols=85 Identities=27% Similarity=0.480 Sum_probs=76.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
..+.++.+.|||.-||.++.+.+|-++|-.||.|...++.- ++.++||.|+++.+|+.||..|||..++.++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 45678999999999999999999999999999998877653 478999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 038175 130 LSWGHNPGNKQ 140 (155)
Q Consensus 130 v~~~~~~~~~~ 140 (155)
|.+.+++...+
T Consensus 359 VQLKRPkdanR 369 (371)
T KOG0146|consen 359 VQLKRPKDANR 369 (371)
T ss_pred hhhcCccccCC
Confidence 99988765443
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=1.6e-17 Score=122.29 Aligned_cols=85 Identities=27% Similarity=0.477 Sum_probs=75.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
..+.+....|||..+|.+.-+.+|-..|..||.|...++.- ++.|+||.|++.-+|..||..|+|..+++++++
T Consensus 418 q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Krlk 497 (510)
T KOG0144|consen 418 QVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLK 497 (510)
T ss_pred cccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccce
Confidence 56678889999999999999999999999999998876643 368899999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 038175 130 LSWGHNPGNKQ 140 (155)
Q Consensus 130 v~~~~~~~~~~ 140 (155)
|...+.+....
T Consensus 498 VQlk~~~~np~ 508 (510)
T KOG0144|consen 498 VQLKRDRNNPY 508 (510)
T ss_pred EEeeeccCCCC
Confidence 99988766544
No 29
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=2.7e-16 Score=104.42 Aligned_cols=123 Identities=19% Similarity=0.316 Sum_probs=103.3
Q ss_pred cccCCCCCCHHHHHhhcccceEEEc---CCCCCCcceEEEEeCCHHHHHHHHHHhcC-----------------------
Q 038175 2 GYCQVSDITNSILQETFSRAKVTID---SNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~---~~~~~~~g~afv~f~~~~~a~~a~~~~~~----------------------- 55 (155)
|-|||.++-|.+|+++|.+..-+++ ++...-.+||||+|+++.+|+.|+..-+|
T Consensus 11 vGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~ 90 (241)
T KOG0105|consen 11 VGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRR 90 (241)
T ss_pred ecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccc
Confidence 6799999999999999994433333 23334567999999999999999987654
Q ss_pred ------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHH
Q 038175 56 ------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQK 117 (155)
Q Consensus 56 ------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 117 (155)
++.......+.|.+||.+.+|++|+++..+.|.|+...+.++ +.+.|+|...++..-|+..
T Consensus 91 G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 91 GSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred cccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehhhHHHHHHh
Confidence 444456678889999999999999999999999999998875 7899999999999999999
Q ss_pred hcCCeeCC
Q 038175 118 LQGTAIGK 125 (155)
Q Consensus 118 l~~~~~~g 125 (155)
|+.+++..
T Consensus 170 ld~~~~~s 177 (241)
T KOG0105|consen 170 LDDQKFRS 177 (241)
T ss_pred hccccccC
Confidence 99887643
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.71 E-value=5.3e-17 Score=122.63 Aligned_cols=130 Identities=29% Similarity=0.497 Sum_probs=113.2
Q ss_pred CCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-----------------------
Q 038175 5 QVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------- 55 (155)
Q Consensus 5 lp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~----------------------- 55 (155)
|+...++.+|.+||+ .+.+|.+..++.++|.|+|+|.+.+.+..|+ .|.|
T Consensus 187 la~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a~~ 265 (549)
T KOG0147|consen 187 LARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAANA 265 (549)
T ss_pred HhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHHhc
Confidence 466788999999999 7888999999999999999999999988887 4555
Q ss_pred ------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCee
Q 038175 56 ------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 56 ------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
.....+...|||+||..+++++.|+..|++||.|..|.+.++ +||+||+|.+.+.|..|+..|||.++
T Consensus 266 s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel 345 (549)
T KOG0147|consen 266 SPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL 345 (549)
T ss_pred cccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee
Confidence 111223334999999999999999999999999999988763 79999999999999999999999999
Q ss_pred CCeEEEEEeccC
Q 038175 124 GKQTVRLSWGHN 135 (155)
Q Consensus 124 ~g~~l~v~~~~~ 135 (155)
.|+.|+|.....
T Consensus 346 AGr~ikV~~v~~ 357 (549)
T KOG0147|consen 346 AGRLIKVSVVTE 357 (549)
T ss_pred cCceEEEEEeee
Confidence 999999988764
No 31
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.70 E-value=8.1e-17 Score=116.93 Aligned_cols=137 Identities=24% Similarity=0.400 Sum_probs=115.3
Q ss_pred ccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHh----cC----------------C
Q 038175 3 YCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEM----NG----------------S 56 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~----~~----------------~ 56 (155)
-.|+++++++.|+++|. +|.+++++.++.++||+||+|.+++...+++... .+ .
T Consensus 12 Ggisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~ 91 (311)
T KOG4205|consen 12 GGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKV 91 (311)
T ss_pred cCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCccccccc
Confidence 46899999999999999 8899999999999999999999999998887652 22 1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
.......++||++||..++++++++.|.+||.|..+.++. .++++||.|.+.+++.+++. ..-+.|.++.+.|
T Consensus 92 ~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vev 170 (311)
T KOG4205|consen 92 GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEV 170 (311)
T ss_pred ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeE
Confidence 1112366999999999999999999999999887776654 37999999999999999887 4777899999999
Q ss_pred EeccCCCCCC
Q 038175 131 SWGHNPGNKQ 140 (155)
Q Consensus 131 ~~~~~~~~~~ 140 (155)
.-+.++....
T Consensus 171 krA~pk~~~~ 180 (311)
T KOG4205|consen 171 KRAIPKEVMQ 180 (311)
T ss_pred eeccchhhcc
Confidence 9998754433
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=1.6e-15 Score=118.80 Aligned_cols=74 Identities=23% Similarity=0.301 Sum_probs=58.9
Q ss_pred CcEEEEcCCCCC--CC---HHHHHHHhhccCCeEEEEeeCCC----------cEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 038175 62 NATIFVGALDSN--VS---DKDLRELFSHFGEILSVKIPVGK----------GCGFVQFANRKDAEVALQKLQGTAIGKQ 126 (155)
Q Consensus 62 ~~~l~v~~l~~~--~~---~~~l~~~f~~~g~v~~~~~~~~~----------g~~~v~f~~~~~a~~a~~~l~~~~~~g~ 126 (155)
.++|.+.|+-.. +. ++||++.+++||.|.++.+.... +..||+|.+.++|.+|+..|+|..|+||
T Consensus 514 S~vVvL~NMv~~~eldedl~eDV~eEC~K~G~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~GR 593 (612)
T TIGR01645 514 SNVIVLRNMVTPQDIDEFLEGEIREECGKFGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFGGR 593 (612)
T ss_pred CCEEEEeCCCChHHhHHHHHHHHHHHhhcCceeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHHHhcCCeECCe
Confidence 466666666432 21 35777888999999999987632 3379999999999999999999999999
Q ss_pred EEEEEeccC
Q 038175 127 TVRLSWGHN 135 (155)
Q Consensus 127 ~l~v~~~~~ 135 (155)
.|+++|...
T Consensus 594 ~V~a~~yd~ 602 (612)
T TIGR01645 594 TVVAEAYDQ 602 (612)
T ss_pred EEEEEEcCH
Confidence 999998643
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=6.4e-16 Score=115.53 Aligned_cols=132 Identities=34% Similarity=0.572 Sum_probs=116.6
Q ss_pred CcccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-------------------
Q 038175 1 NGYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------- 55 (155)
Q Consensus 1 ~v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------------- 55 (155)
+|-||+++++..+|.++|+ +|++.++.. .++|| ||+|++.+.|++|+..++|
T Consensus 80 ~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~--g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 80 FIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN--GSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC--Cceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 4789999999999999999 788888753 39999 9999999999999999999
Q ss_pred ----CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 038175 56 ----SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126 (155)
Q Consensus 56 ----~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~ 126 (155)
......-..+++.+.+...+++.|...|+.+|.+..+.++. .++++|++|++.+.|..|+..|++..+++.
T Consensus 157 ~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~ 236 (369)
T KOG0123|consen 157 EAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDK 236 (369)
T ss_pred cccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCcc
Confidence 11234466788999999999999999999999999998875 379999999999999999999999999999
Q ss_pred EEEEEeccC
Q 038175 127 TVRLSWGHN 135 (155)
Q Consensus 127 ~l~v~~~~~ 135 (155)
.+.|.-+..
T Consensus 237 ~~~V~~aqk 245 (369)
T KOG0123|consen 237 ELYVGRAQK 245 (369)
T ss_pred ceeeccccc
Confidence 988887765
No 34
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=9.3e-16 Score=88.71 Aligned_cols=65 Identities=42% Similarity=0.799 Sum_probs=61.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 65 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
|||+|||..+++++|+++|++||.+..+.+..+ +++|||+|.+.++|+.|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988762 68999999999999999999999999999986
No 35
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.66 E-value=2.2e-15 Score=111.51 Aligned_cols=75 Identities=24% Similarity=0.400 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
....++|+|.|||.+++|.-|++.|..+|.|.+..+.. .+..+.|.|.++++|+.|+..|+|-.+.|+.|+|+|.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 45678899999999999999999999999999988753 3555689999999999999999999999999999973
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.8e-15 Score=104.83 Aligned_cols=124 Identities=28% Similarity=0.492 Sum_probs=94.6
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHH-HhcCCCCCCCCcEEEEcCCCCCCCHHHHH
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMI-EMNGSDGKSNNATIFVGALDSNVSDKDLR 80 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 80 (155)
|-||+.++||+=|..+|..+..++.. -|.|+.. ....|.. ....++.....-.++|+.|...++-++|+
T Consensus 11 vgnld~~vte~~i~~lf~qig~v~~~---------k~i~~e~-~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr 80 (321)
T KOG0148|consen 11 VGNLDSTVTEDFIATLFNQIGSVTKT---------KVIFDEL-KVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLR 80 (321)
T ss_pred eeccChhhHHHHHHHHHHhccccccc---------eeehhhh-ccccccCcccCCCCccccceeEEehhcchhcchHHHH
Confidence 67999999999999999933332221 1112100 0000000 11223444457789999999999999999
Q ss_pred HHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 81 ELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 81 ~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
+.|.+||.|..+++.+ ++||+||.|...++|+.||..|+|+.|++|.|+..|++-
T Consensus 81 ~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 81 EAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred HHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 9999999999999876 489999999999999999999999999999999999964
No 37
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=6.1e-15 Score=109.66 Aligned_cols=80 Identities=24% Similarity=0.500 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||++||.++++++|+++|+.||.|..+++.. ++++|||+|.+.++|+.|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 4566789999999999999999999999999999998865 3589999999999999999999999999999999
Q ss_pred EeccCC
Q 038175 131 SWGHNP 136 (155)
Q Consensus 131 ~~~~~~ 136 (155)
.|+++.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998753
No 38
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=3.4e-15 Score=93.53 Aligned_cols=85 Identities=29% Similarity=0.592 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHH
Q 038175 42 DENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVAL 115 (155)
Q Consensus 42 ~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~ 115 (155)
+.++..+|+ ..+++|||+||+..++|+.|.++|++.|.|.+|.+-.+ .|+|||+|.+.++|+.|+
T Consensus 25 t~~e~~~a~---------r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Al 95 (153)
T KOG0121|consen 25 TDEEQLEAL---------RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDAL 95 (153)
T ss_pred chHHHHHHH---------hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHH
Confidence 555566664 35899999999999999999999999999999988543 699999999999999999
Q ss_pred HHhcCCeeCCeEEEEEeccC
Q 038175 116 QKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 116 ~~l~~~~~~g~~l~v~~~~~ 135 (155)
.-++|..++++.|++.|..-
T Consensus 96 ryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 96 RYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred HHhccCcccccceeeecccc
Confidence 99999999999999999753
No 39
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=98.38 Aligned_cols=122 Identities=22% Similarity=0.350 Sum_probs=99.4
Q ss_pred cccCCCCCCHHHHHhhcc-----cceEEE--cCCCCCCcceEEEEeCCHHHHHHHHHHhcC-------------------
Q 038175 2 GYCQVSDITNSILQETFS-----RAKVTI--DSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~-----~~~~~~--~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------------- 55 (155)
|+-||.++...+|+.+|. +-..++ +......+.+||+.|.+.++|..|+..|+|
T Consensus 39 VSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSN 118 (284)
T KOG1457|consen 39 VSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSN 118 (284)
T ss_pred eccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcC
Confidence 678999999999999999 222232 323334568999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 038175 56 -------------------------------------------------------------------------------- 55 (155)
Q Consensus 56 -------------------------------------------------------------------------------- 55 (155)
T Consensus 119 tK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ 198 (284)
T KOG1457|consen 119 TKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLE 198 (284)
T ss_pred cccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhh
Confidence
Q ss_pred -----CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCCee
Q 038175 56 -----SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 56 -----~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~--~~g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
.....-+.+|||.||..++++++|+.+|+.|.....+++.. +...+|++|++.+.|..|+..|+|..+
T Consensus 199 ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 199 KSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 12234567999999999999999999999997666655543 456799999999999999999999866
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.59 E-value=3e-14 Score=106.76 Aligned_cols=131 Identities=21% Similarity=0.378 Sum_probs=103.0
Q ss_pred ccCCCCCCHHHHHhhcccceE---EEcCCCCCCcceEEEEeCCHHHHHHHHHHhc----C--------------------
Q 038175 3 YCQVSDITNSILQETFSRAKV---TIDSNTGHTKGYGFVRFGDENERSRAMIEMN----G-------------------- 55 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~~~~~---~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~----~-------------------- 55 (155)
.-||+++|++||.+||+.|.| +..+.+++..|-|||+|.+.+++++|+++-. .
T Consensus 16 rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~ 95 (510)
T KOG4211|consen 16 RGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPG 95 (510)
T ss_pred cCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCC
Confidence 458999999999999994433 3444568899999999999999999997521 1
Q ss_pred -CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEE
Q 038175 56 -SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS-VKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128 (155)
Q Consensus 56 -~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l 128 (155)
+........|.+.+||..++++||.++|+..-.|.. +.++. ..+-|||+|++.+.|+.|+.. |...++.+.|
T Consensus 96 g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYI 174 (510)
T KOG4211|consen 96 GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYI 174 (510)
T ss_pred CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceE
Confidence 122246778999999999999999999998755544 22322 368899999999999999985 7778888888
Q ss_pred EEEecc
Q 038175 129 RLSWGH 134 (155)
Q Consensus 129 ~v~~~~ 134 (155)
.|--+.
T Consensus 175 EvF~Ss 180 (510)
T KOG4211|consen 175 EVFRSS 180 (510)
T ss_pred EeehhH
Confidence 876543
No 41
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.9e-14 Score=101.56 Aligned_cols=74 Identities=27% Similarity=0.442 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
..++|||+|||..+++++|+++|+.||.|..+.++.+ +++|||+|.+.++|+.|+. |+|..+.|+.|+|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 3679999999999999999999999999999999764 6899999999999999996 999999999999999864
No 42
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.4e-14 Score=95.34 Aligned_cols=78 Identities=29% Similarity=0.551 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
....++|||+||+..+++.||..+|..||.+..+-+.. ..|||||+|+++.+|+.|+..|+|..|.|..|+|++++-.
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 34588999999999999999999999999998887754 4799999999999999999999999999999999998754
No 43
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=1.4e-14 Score=97.75 Aligned_cols=80 Identities=28% Similarity=0.510 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
++......+|-|.||.+.++.++|+.+|++||.|-.|.|+.+ +|||||.|.+..+|+.|+..|+|..++|+.|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 455667889999999999999999999999999999999863 79999999999999999999999999999999
Q ss_pred EEeccC
Q 038175 130 LSWGHN 135 (155)
Q Consensus 130 v~~~~~ 135 (155)
|++++-
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 999874
No 44
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=2.7e-14 Score=82.77 Aligned_cols=65 Identities=32% Similarity=0.680 Sum_probs=59.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 65 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
|+|+|||..+++++|+++|+.+|.|..+.+..+ +++|||+|.+.++|..|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 789999999999999999999999999998865 58999999999999999999998999999885
No 45
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=2.3e-14 Score=102.63 Aligned_cols=81 Identities=31% Similarity=0.521 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.......++|+|.|||+...+.||+.+|.+||.|..|.|.- +||++||+|++.++|++|-..|||..+.||+|+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34456789999999999999999999999999999998864 48999999999999999999999999999999999
Q ss_pred eccCC
Q 038175 132 WGHNP 136 (155)
Q Consensus 132 ~~~~~ 136 (155)
-++..
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 98753
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=9.3e-14 Score=107.98 Aligned_cols=133 Identities=26% Similarity=0.329 Sum_probs=107.4
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------------
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------------- 55 (155)
|.|||..+..++|...|...+-+........--.|.|+|.++.+|..|...+..
T Consensus 390 ~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~ 469 (725)
T KOG0110|consen 390 VKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADD 469 (725)
T ss_pred eccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccc
Confidence 579999999999999999332222211111212599999999999999987765
Q ss_pred ---------------------------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC
Q 038175 56 ---------------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV 96 (155)
Q Consensus 56 ---------------------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 96 (155)
........+||+.|++...+.+++...|...|.|..+.|..
T Consensus 470 ~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~k 549 (725)
T KOG0110|consen 470 LSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISK 549 (725)
T ss_pred cccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEec
Confidence 01112333399999999999999999999999999998765
Q ss_pred C---------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 97 G---------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 97 ~---------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
. .|++||+|.+.++|+.|++.|+|+.+.|+.|.|+++.
T Consensus 550 kkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 550 KKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred cccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 2 3999999999999999999999999999999999998
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=3.7e-14 Score=94.32 Aligned_cols=77 Identities=25% Similarity=0.485 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~---~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
...++|||+|||.++.+.+|+++|.+||.|..|.+.. ...||||+|+++.+|+.||..-+|..++|+.|+|.|++.-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 4578999999999999999999999999999998864 2689999999999999999999999999999999999764
No 48
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.54 E-value=1.1e-13 Score=76.75 Aligned_cols=55 Identities=38% Similarity=0.677 Sum_probs=51.4
Q ss_pred HHHHhhccCCeEEEEeeCCC-cEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 79 LRELFSHFGEILSVKIPVGK-GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 79 l~~~f~~~g~v~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
|+++|++||.|..+.+.+.. +.|||+|.+.++|+.|++.|+|..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998877 99999999999999999999999999999999986
No 49
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=1.5e-13 Score=79.12 Aligned_cols=68 Identities=49% Similarity=0.852 Sum_probs=63.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCC----cEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK----GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 64 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
+|+|+|+|..+++++|+++|.+||.+..+.+..+. ++|||+|.+.+.|+.|+..+++..+.|+.++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999888765 999999999999999999999999999998874
No 50
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=4.5e-14 Score=89.37 Aligned_cols=108 Identities=27% Similarity=0.505 Sum_probs=87.0
Q ss_pred CCcceEEEEeCCHHHHHHH----HHHh-----cCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC----
Q 038175 31 HTKGYGFVRFGDENERSRA----MIEM-----NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG---- 97 (155)
Q Consensus 31 ~~~g~afv~f~~~~~a~~a----~~~~-----~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---- 97 (155)
..+|-+|-+=++...+.+. +++. .++........|||.++....++++|.+.|..||.|+.+++..+
T Consensus 32 k~kGRGf~~e~~sr~r~r~~yd~vee~~s~~~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtG 111 (170)
T KOG0130|consen 32 KRKGRGFGSEKDSRRRRRLSYDDVEEDGSDMRPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTG 111 (170)
T ss_pred hhcCCCcccccchHHHhhhhhhhHhhcccccCCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccc
Confidence 4566666655444443332 1111 22666778899999999999999999999999999999999764
Q ss_pred --CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 038175 98 --KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138 (155)
Q Consensus 98 --~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 138 (155)
+||++|+|++.+.|++|+..+||..+-|.+|.|.|+-...+
T Consensus 112 y~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 112 YVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKGP 154 (170)
T ss_pred cccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecCC
Confidence 69999999999999999999999999999999999865443
No 51
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.52 E-value=1.4e-13 Score=104.39 Aligned_cols=134 Identities=22% Similarity=0.385 Sum_probs=106.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|.||-.+++|+.|+.+|. .+.+..+..+|.++|||||+|.+.++|.+|+..|||
T Consensus 283 vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 283 VGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred hcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccc
Confidence 679999999999999999 445556666899999999999999999999999998
Q ss_pred -------------------------------------------------------------------CCCC-------CC
Q 038175 56 -------------------------------------------------------------------SDGK-------SN 61 (155)
Q Consensus 56 -------------------------------------------------------------------~~~~-------~~ 61 (155)
..+. +.
T Consensus 363 ~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~ 442 (549)
T KOG0147|consen 363 EAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIP 442 (549)
T ss_pred cccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCc
Confidence 0011 22
Q ss_pred CcEEEEcCCC--CCCC--------HHHHHHHhhccCCeEEEEeeCCC-cEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 62 NATIFVGALD--SNVS--------DKDLRELFSHFGEILSVKIPVGK-GCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 62 ~~~l~v~~l~--~~~~--------~~~l~~~f~~~g~v~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
...+.+.|.= ...+ .+++.+.+.+||.|..|.+-++. |+.||.|.+.+.|..|+..|||..|.|+.|.+
T Consensus 443 t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita 522 (549)
T KOG0147|consen 443 TQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITA 522 (549)
T ss_pred cHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEE
Confidence 2233333321 1111 25677778999999999987754 99999999999999999999999999999999
Q ss_pred EeccC
Q 038175 131 SWGHN 135 (155)
Q Consensus 131 ~~~~~ 135 (155)
.|-..
T Consensus 523 ~~~~~ 527 (549)
T KOG0147|consen 523 KYLPL 527 (549)
T ss_pred EEeeh
Confidence 98653
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.52 E-value=8.9e-13 Score=90.26 Aligned_cols=133 Identities=24% Similarity=0.354 Sum_probs=113.2
Q ss_pred cccCCCCCCHHHHHh----hcccc---eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-------------------
Q 038175 2 GYCQVSDITNSILQE----TFSRA---KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~----~f~~~---~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------------- 55 (155)
|.||...+..++|+. +|+.. .-+.-..+.+.+|.|||.|.+.+.|..|+..|+|
T Consensus 14 InnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdi 93 (221)
T KOG4206|consen 14 INNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDI 93 (221)
T ss_pred ehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccch
Confidence 678999999999998 88833 2333334678999999999999999999999999
Q ss_pred --C--------------------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe
Q 038175 56 --S--------------------------------------------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEI 89 (155)
Q Consensus 56 --~--------------------------------------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v 89 (155)
. ...+....+++.|+|...+.+.+..+|.+|...
T Consensus 94 i~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~ 173 (221)
T KOG4206|consen 94 IAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGF 173 (221)
T ss_pred hhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCccc
Confidence 0 114567889999999999999999999999999
Q ss_pred EEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCCeeC-CeEEEEEecc
Q 038175 90 LSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAIG-KQTVRLSWGH 134 (155)
Q Consensus 90 ~~~~~~~-~~g~~~v~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 134 (155)
..+++.. ..+.|||+|.+...|..|...+++..+. ...+.|.+++
T Consensus 174 keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 174 KEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred ceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9998876 4689999999999999999999999886 8888888874
No 53
>PLN03213 repressor of silencing 3; Provisional
Probab=99.52 E-value=1e-13 Score=104.37 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC--CCcEEEEEecCH--HHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--GKGCGFVQFANR--KDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~--~~g~~~v~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
.....-+||||||+..+++++|+.+|++||.|..+.+++ ++|||||+|.+. .++.+||+.|+|..+.|+.|+|..+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 345678999999999999999999999999999999986 489999999987 6899999999999999999999998
Q ss_pred cCC
Q 038175 134 HNP 136 (155)
Q Consensus 134 ~~~ 136 (155)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 763
No 54
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.2e-13 Score=82.48 Aligned_cols=80 Identities=19% Similarity=0.372 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~---~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
.+...++.|||.|||..++.++..++|.+||.|..+++-. .+|.|||.|++..+|.+|+..|+|..+.++.+.|-|-
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4556788999999999999999999999999999999864 3799999999999999999999999999999999997
Q ss_pred cCC
Q 038175 134 HNP 136 (155)
Q Consensus 134 ~~~ 136 (155)
.+.
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 653
No 55
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.4e-13 Score=96.37 Aligned_cols=86 Identities=22% Similarity=0.449 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
..+-+||||+.|+.++++..|+..|..||.|++|++.. ++|||||+|++..+...|.+..+|.+|+|+.|-|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 36779999999999999999999999999999999876 479999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCC
Q 038175 133 GHNPGNKQWRGD 144 (155)
Q Consensus 133 ~~~~~~~~~~~~ 144 (155)
.+..+.+.|...
T Consensus 178 ERgRTvkgW~PR 189 (335)
T KOG0113|consen 178 ERGRTVKGWLPR 189 (335)
T ss_pred cccccccccccc
Confidence 998888887653
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.8e-13 Score=94.57 Aligned_cols=79 Identities=33% Similarity=0.588 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
...+..+|.|.||+.++++++|+++|.+||.|.++.+.+ .+|+|||.|.+.++|.+||..|+|.-+..--|+|.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 345678899999999999999999999999999999876 37999999999999999999999999999999999
Q ss_pred eccCC
Q 038175 132 WGHNP 136 (155)
Q Consensus 132 ~~~~~ 136 (155)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 57
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.49 E-value=1.7e-12 Score=93.67 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=107.5
Q ss_pred cccCCCCCCHHHHHhhcccceEEE-cCC------------CCCCcceEEEEeCCHHHHHHHHHHhcC-------------
Q 038175 2 GYCQVSDITNSILQETFSRAKVTI-DSN------------TGHTKGYGFVRFGDENERSRAMIEMNG------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~-~~~------------~~~~~g~afv~f~~~~~a~~a~~~~~~------------- 55 (155)
|++||.++|-+++.++|+.|.+|. ++. .|.-+|-|++.|...+++..|+..|++
T Consensus 139 VsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerA 218 (382)
T KOG1548|consen 139 VSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERA 218 (382)
T ss_pred ecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehh
Confidence 689999999999999999665543 222 256689999999999999999988777
Q ss_pred ----------------------------------------CCCCCCCcEEEEcCCCCC----CC-------HHHHHHHhh
Q 038175 56 ----------------------------------------SDGKSNNATIFVGALDSN----VS-------DKDLRELFS 84 (155)
Q Consensus 56 ----------------------------------------~~~~~~~~~l~v~~l~~~----~~-------~~~l~~~f~ 84 (155)
+......++|.+.|+=.. -+ +++|..-+.
T Consensus 219 kfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~ 298 (382)
T KOG1548|consen 219 KFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECE 298 (382)
T ss_pred hhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHH
Confidence 223345677777765321 12 356777789
Q ss_pred ccCCeEEEEee--CCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 85 HFGEILSVKIP--VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 85 ~~g~v~~~~~~--~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
+||.|.+|.+. .+.|.+.|.|.+.+.|..+|..|+|..++|+.|..+...-
T Consensus 299 K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 299 KFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 99999999987 4689999999999999999999999999999999877543
No 58
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=5.4e-13 Score=104.48 Aligned_cols=92 Identities=21% Similarity=0.440 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHhcC--------------C------CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----
Q 038175 42 DENERSRAMIEMNG--------------S------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----- 96 (155)
Q Consensus 42 ~~~~a~~a~~~~~~--------------~------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~----- 96 (155)
..+.|.+|+.++++ + ......++|||+|||.++++++|+++|+++|.|..++++.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 35678888887766 1 1234568999999999999999999999999999998864
Q ss_pred CCcEEEEEecCHHHHHHHHHHhcCCeeC-CeEEEEEec
Q 038175 97 GKGCGFVQFANRKDAEVALQKLQGTAIG-KQTVRLSWG 133 (155)
Q Consensus 97 ~~g~~~v~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~ 133 (155)
++|+|||+|.+.++|+.|++.|++..+. ++.|.|..+
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4799999999999999999999999885 777766654
No 59
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=8.3e-13 Score=92.00 Aligned_cols=74 Identities=28% Similarity=0.357 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
....+|+|+||+..+++++|+++|+.+|.|..+++.++ .++|||+|.++++++.|+. |+|..|.++.|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45689999999999999999999999999999999874 4799999999999999995 99999999999998865
No 60
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=9.9e-14 Score=95.54 Aligned_cols=128 Identities=23% Similarity=0.367 Sum_probs=106.8
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------------
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------------- 55 (155)
|-+||..+.+.+|..+|.+..-+.+.. ...||+||+|.+..+|..|+..+++
T Consensus 6 vg~~~~~~~~~d~E~~f~~yg~~~d~~--mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g 83 (216)
T KOG0106|consen 6 IGRLPYRARERDVERFFKGYGKIPDAD--MKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGG 83 (216)
T ss_pred ecccCCccchhHHHHHHhhccccccce--eecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCC
Confidence 457899999999999999555544432 3447999999999999999998877
Q ss_pred ---------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 038175 56 ---------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126 (155)
Q Consensus 56 ---------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~ 126 (155)
.........+.+.+++..+++.+|.+.|.++|.+..... ..+.+||+|++.++|..|++.+++..+.++
T Consensus 84 ~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~ 161 (216)
T KOG0106|consen 84 DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGR 161 (216)
T ss_pred CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhcCc
Confidence 112345677889999999999999999999999855444 478999999999999999999999999999
Q ss_pred EEEEEec
Q 038175 127 TVRLSWG 133 (155)
Q Consensus 127 ~l~v~~~ 133 (155)
.|.+...
T Consensus 162 ~l~~~~~ 168 (216)
T KOG0106|consen 162 RISVEKN 168 (216)
T ss_pred eeeeccc
Confidence 9999543
No 61
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=2.7e-12 Score=74.21 Aligned_cols=69 Identities=46% Similarity=0.839 Sum_probs=64.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 64 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
+|+|++||..+++++|+++|..+|.+..+.+... +++|+|+|.+.++|..|+..+++..+.|+.+.|+|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4789999999999999999999999999988764 68999999999999999999999999999999875
No 62
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.43 E-value=6.6e-12 Score=92.54 Aligned_cols=134 Identities=19% Similarity=0.343 Sum_probs=107.6
Q ss_pred cCCCCCCHHHHHhhcccceEEE--cCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------------
Q 038175 4 CQVSDITNSILQETFSRAKVTI--DSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------------- 55 (155)
Q Consensus 4 nlp~~~te~~l~~~f~~~~~~~--~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------------- 55 (155)
|+-..+|-+.|..+|+.++.+. -..++...-.|+|+|.+.+.|..|...|+|
T Consensus 157 ~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynn 236 (492)
T KOG1190|consen 157 NMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNN 236 (492)
T ss_pred cceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccc
Confidence 5566789999999999332222 112334444699999999999999988888
Q ss_pred -----------------------------------------------------CCCCC-CCcEEEEcCCCCC-CCHHHHH
Q 038175 56 -----------------------------------------------------SDGKS-NNATIFVGALDSN-VSDKDLR 80 (155)
Q Consensus 56 -----------------------------------------------------~~~~~-~~~~l~v~~l~~~-~~~~~l~ 80 (155)
..... .+..|.|.|+... ++.+.|.
T Consensus 237 dkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~Lf 316 (492)
T KOG1190|consen 237 DKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLF 316 (492)
T ss_pred cccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHH
Confidence 00001 2577888888875 9999999
Q ss_pred HHhhccCCeEEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 038175 81 ELFSHFGEILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137 (155)
Q Consensus 81 ~~f~~~g~v~~~~~~~-~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 137 (155)
.+|+.||.|.+|++.. .+..|+|+|.+...|+.|++.|+|..+.|++|+|.+++.+.
T Consensus 317 tlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 317 TLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred HHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 9999999999999875 46789999999999999999999999999999999998754
No 63
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.4e-13 Score=91.49 Aligned_cols=82 Identities=29% Similarity=0.582 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
....++|||++|...+++..|...|=+||.|..|.++. .+|++||+|...++|.+||..|++.+|.|+.|+|.|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45689999999999999999999999999999999985 389999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 038175 133 GHNPGNKQ 140 (155)
Q Consensus 133 ~~~~~~~~ 140 (155)
+++..-+.
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99865443
No 64
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=3.4e-12 Score=73.08 Aligned_cols=65 Identities=42% Similarity=0.747 Sum_probs=59.4
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 67 VGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 67 v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
|+|+|..+++++|+++|++||.|..+.+... +++|||+|.+.+.|..|+..+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5789999999999999999999999988754 5799999999999999999999999999998874
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.37 E-value=1.6e-12 Score=86.27 Aligned_cols=77 Identities=31% Similarity=0.580 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
+.....+|||+||+..++++-|.++|-+.|+|..++++++ +||||++|.+.++|+-|++-|+..++.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 3456789999999999999999999999999999999873 7999999999999999999999999999999999
Q ss_pred ecc
Q 038175 132 WGH 134 (155)
Q Consensus 132 ~~~ 134 (155)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 876
No 66
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=8.5e-12 Score=95.40 Aligned_cols=135 Identities=25% Similarity=0.381 Sum_probs=103.3
Q ss_pred CcccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-------------------
Q 038175 1 NGYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------- 55 (155)
Q Consensus 1 ~v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------------- 55 (155)
+|.+||...++.++.++.. ...++.+..++.++||||.+|.+......|+..++|
T Consensus 293 ~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 293 FVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred hhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 3678999999998888877 667788888899999999999999999999998888
Q ss_pred --CCCC--------CCCcEEEEcCCCCC-------CCH-------------HHHHHHhhccCCeEEEEeeCC--------
Q 038175 56 --SDGK--------SNNATIFVGALDSN-------VSD-------------KDLRELFSHFGEILSVKIPVG-------- 97 (155)
Q Consensus 56 --~~~~--------~~~~~l~v~~l~~~-------~~~-------------~~l~~~f~~~g~v~~~~~~~~-------- 97 (155)
.... ......-..+.|.. +++ ++++.-+++||.|..|.+++.
T Consensus 373 ~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~ 452 (500)
T KOG0120|consen 373 ANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVP 452 (500)
T ss_pred ccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCC
Confidence 0000 00000011111111 111 456667889999999998763
Q ss_pred -CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 98 -KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 98 -~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
.|..||+|.+.++++.|++.|+|.++.++.+..+|...
T Consensus 453 G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 453 GTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 57899999999999999999999999999999999754
No 67
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=8.3e-12 Score=90.25 Aligned_cols=80 Identities=33% Similarity=0.653 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHh-cCCeeCCeEEEEEecc
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL-QGTAIGKQTVRLSWGH 134 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~ 134 (155)
++++....+|||++|...+++.+|+++|.+||.+..+.+...+++|||+|.+.++|+.|.+.. +...+.|.+|+|.|++
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 788899999999999999999999999999999999999999999999999999999997665 4446799999999998
Q ss_pred C
Q 038175 135 N 135 (155)
Q Consensus 135 ~ 135 (155)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 68
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.32 E-value=5.2e-12 Score=83.15 Aligned_cols=64 Identities=34% Similarity=0.550 Sum_probs=54.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++||++|+++|. .+.++.+..++.++|||||+|.+.++|+.|+..+++.. ...+.|.|
T Consensus 39 VgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~--i~Gr~l~V 108 (144)
T PLN03134 39 IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE--LNGRHIRV 108 (144)
T ss_pred EeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE--ECCEEEEE
Confidence 689999999999999998 56777888889999999999999999999999888743 33455555
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=6.7e-12 Score=88.89 Aligned_cols=72 Identities=26% Similarity=0.587 Sum_probs=68.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
-+|||+|||..+++.+|+.+|++||.|..|.|. +.|+||..++...++.||..|+|-.|.|..|.|.-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 479999999999999999999999999999999 679999999999999999999999999999999988776
No 70
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.7e-11 Score=89.48 Aligned_cols=100 Identities=22% Similarity=0.459 Sum_probs=82.8
Q ss_pred EEEEeCCHHHHHHHHHHhcC--------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEee
Q 038175 36 GFVRFGDENERSRAMIEMNG--------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP 95 (155)
Q Consensus 36 afv~f~~~~~a~~a~~~~~~--------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~ 95 (155)
+.-...+.+.|.+++.+-.+ .+.....+-|||+.||.++.|++|.-+|++.|.|-.++++
T Consensus 37 ~~~~~~~~eaal~al~E~tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLM 116 (506)
T KOG0117|consen 37 GVAGVQSEEAALKALLERTGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLM 116 (506)
T ss_pred cccccccHHHHHHHHHHhcCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEe
Confidence 33444556778888766544 2334788999999999999999999999999999999987
Q ss_pred C------CCcEEEEEecCHHHHHHHHHHhcCCeeC-CeEEEEEeccC
Q 038175 96 V------GKGCGFVQFANRKDAEVALQKLQGTAIG-KQTVRLSWGHN 135 (155)
Q Consensus 96 ~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~ 135 (155)
. ++|||||.|.+.+.|+.|++.||+.+|. |+.|.|..+..
T Consensus 117 mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 117 MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 5 4899999999999999999999999884 88888776543
No 71
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.30 E-value=4.5e-11 Score=88.25 Aligned_cols=130 Identities=22% Similarity=0.338 Sum_probs=106.4
Q ss_pred cccC-CCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-------------------
Q 038175 2 GYCQ-VSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------- 55 (155)
Q Consensus 2 v~nl-p~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------------- 55 (155)
|.|| +..+|.+.|..+|+ .++++.. .+-.|+|+|.+..+|+-|++-|+|
T Consensus 302 vsnln~~~VT~d~LftlFgvYGdVqRVkil~n-----kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 302 VSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-----KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred EecCchhccchhHHHHHHhhhcceEEEEeeec-----CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 5667 78899999999999 2333332 225799999999999999998888
Q ss_pred -------------------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEe-eCCCcEEE
Q 038175 56 -------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEI-LSVKI-PVGKGCGF 102 (155)
Q Consensus 56 -------------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~-~~~~g~~~ 102 (155)
....++..+|++.|+|.++++++++.+|.+.|.. +..+. .+++.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 1123677899999999999999999999999865 44444 34678999
Q ss_pred EEecCHHHHHHHHHHhcCCeeCCe-EEEEEeccCC
Q 038175 103 VQFANRKDAEVALQKLQGTAIGKQ-TVRLSWGHNP 136 (155)
Q Consensus 103 v~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~~~ 136 (155)
+.+.+.+.|..|+..++...++.. .++|+|+++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 999999999999999999998754 8999998763
No 72
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=4.8e-13 Score=88.74 Aligned_cols=77 Identities=26% Similarity=0.531 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
-.++.-|||||||+.+++.||--+|++||.|..|.+.+ ++||||+-|++..+...|+..|+|..+.|+.|+|.+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 35678899999999999999999999999999999986 379999999999999999999999999999999988
Q ss_pred ccC
Q 038175 133 GHN 135 (155)
Q Consensus 133 ~~~ 135 (155)
...
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 653
No 73
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.3e-12 Score=87.37 Aligned_cols=54 Identities=31% Similarity=0.556 Sum_probs=51.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.+++|++|+++|. .+.+.++..+|.++|||||.|.+.++|.+|+..|+|
T Consensus 194 vtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG 253 (270)
T KOG0122|consen 194 VTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNG 253 (270)
T ss_pred EecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccC
Confidence 789999999999999999 678889999999999999999999999999999988
No 74
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.29 E-value=2.2e-11 Score=83.54 Aligned_cols=78 Identities=28% Similarity=0.552 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHH----HhhccCCeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 60 SNNATIFVGALDSNVSDKDLRE----LFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~----~f~~~g~v~~~~~~~---~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
.+..||||.||++.+..++|+. +|++||.|..|...+ -+|-|||.|.+.+.|..|+..|+|..+.|+.++|.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3444999999999999999988 999999999987764 379999999999999999999999999999999999
Q ss_pred ccCCC
Q 038175 133 GHNPG 137 (155)
Q Consensus 133 ~~~~~ 137 (155)
++++.
T Consensus 87 A~s~s 91 (221)
T KOG4206|consen 87 AKSDS 91 (221)
T ss_pred ccCcc
Confidence 98754
No 75
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=3.4e-11 Score=86.27 Aligned_cols=73 Identities=36% Similarity=0.684 Sum_probs=68.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 62 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
..+|||+|||..+++++|+++|.+||.+..+.+..+ +|+|||+|.+.+.|..|+..+++..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999999999999999999999988887653 6999999999999999999999999999999999965
No 76
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.27 E-value=6.1e-11 Score=87.02 Aligned_cols=132 Identities=18% Similarity=0.205 Sum_probs=104.1
Q ss_pred ccCCCCCCHHHHHhhcc--------cce-EEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC------------------
Q 038175 3 YCQVSDITNSILQETFS--------RAK-VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------ 55 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~--------~~~-~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------------ 55 (155)
.-||.++++.++.++|. ... +...+.++.-.|-|||.|..+++|+.|+.+-..
T Consensus 167 RGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvq 246 (508)
T KOG1365|consen 167 RGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQ 246 (508)
T ss_pred cCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Confidence 45899999999999996 122 223334677789999999999999999865332
Q ss_pred ---------------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEE--EEeeC-----CCcE
Q 038175 56 ---------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE-ILS--VKIPV-----GKGC 100 (155)
Q Consensus 56 ---------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~--~~~~~-----~~g~ 100 (155)
.+.......|.+.+||+..+.++|.++|..|.. +.. +++.. ..|-
T Consensus 247 qvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGe 326 (508)
T KOG1365|consen 247 QVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGE 326 (508)
T ss_pred HHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChh
Confidence 233345778999999999999999999998864 333 56543 3588
Q ss_pred EEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 101 ~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
|||+|.+.+.|..|....+++..+++.|+|-.+.
T Consensus 327 AFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 327 AFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 9999999999999999989888889999987654
No 77
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.27 E-value=1.2e-11 Score=71.30 Aligned_cols=53 Identities=36% Similarity=0.580 Sum_probs=46.7
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++|+++|+++|+ .+.+..+ ..+..+++|||+|.+.++|+.|+..+++
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCC
Confidence 689999999999999999 4455555 5678899999999999999999999887
No 78
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.2e-11 Score=87.66 Aligned_cols=88 Identities=25% Similarity=0.484 Sum_probs=78.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
....++-..|||..|.+.++.++|.-+|+.||.|..|.+.++ -.||||+|++.+++++|.-+|++..+.++.|+
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 456778899999999999999999999999999999999874 37899999999999999999999999999999
Q ss_pred EEeccCCCCCCCCC
Q 038175 130 LSWGHNPGNKQWRG 143 (155)
Q Consensus 130 v~~~~~~~~~~~~~ 143 (155)
|.|+++-.+.+|++
T Consensus 313 VDFSQSVsk~k~r~ 326 (479)
T KOG0415|consen 313 VDFSQSVSKVKYRQ 326 (479)
T ss_pred eehhhhhhhhhccc
Confidence 99998765544443
No 79
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.23 E-value=3.7e-11 Score=91.19 Aligned_cols=75 Identities=29% Similarity=0.598 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
+.+||||+|+++++++|..+|+..|.|..+++..+ +||+|++|.+.+.|..|++.|+|.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999998753 799999999999999999999999999999999998754
Q ss_pred C
Q 038175 137 G 137 (155)
Q Consensus 137 ~ 137 (155)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 80
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.23 E-value=4.3e-11 Score=94.30 Aligned_cols=82 Identities=37% Similarity=0.725 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 138 (155)
..-.+||||+.|+..+++.||..+|+.||.|..|.+...+++|||.+....+|.+|+.+|....+.++.|+|.|+.....
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred CC
Q 038175 139 KQ 140 (155)
Q Consensus 139 ~~ 140 (155)
+.
T Consensus 498 ks 499 (894)
T KOG0132|consen 498 KS 499 (894)
T ss_pred ch
Confidence 65
No 81
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=1.1e-10 Score=80.62 Aligned_cols=76 Identities=29% Similarity=0.496 Sum_probs=65.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.+..-.+||||+|+-.+..++|++.|++||+|....+.. ++||+||+|.+.++|.+|++. ....|+||+..+.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 455678999999999999999999999999998877653 589999999999999999985 5567899988877
Q ss_pred ecc
Q 038175 132 WGH 134 (155)
Q Consensus 132 ~~~ 134 (155)
++-
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 764
No 82
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1.6e-11 Score=89.57 Aligned_cols=74 Identities=23% Similarity=0.541 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEee------CCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~------~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
..-.+++|||.+.+.+.++.|+..|.+||.|+.+.+. +.+|++||+|+-++.|+.|++.|||..++||.|+|..
T Consensus 110 LaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 110 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 3467899999999999999999999999999999875 3589999999999999999999999999999999973
No 83
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.14 E-value=1.5e-10 Score=66.82 Aligned_cols=53 Identities=26% Similarity=0.493 Sum_probs=43.7
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||+++++++|+++|. .+.++.... +..+++|||+|.+.++|.+|+..+++
T Consensus 3 i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~ 61 (70)
T PF14259_consen 3 ISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNG 61 (70)
T ss_dssp EESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCC
Confidence 689999999999999999 445555554 77899999999999999999988764
No 84
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.14 E-value=5.4e-10 Score=81.91 Aligned_cols=136 Identities=16% Similarity=0.159 Sum_probs=101.7
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC------------------------CC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------------SD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------------------~~ 57 (155)
|.+|-..++|.+|.+..+....+.-......+..|.|+|++.+.|..++.--.. .+
T Consensus 36 vr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g~e 115 (494)
T KOG1456|consen 36 VRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERPGDE 115 (494)
T ss_pred EeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhccCCCC
Confidence 567888899999999888433322222234556899999999999988752111 22
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcE-EEEEecCHHHHHHHHHHhcCCee--CCeEEEEEe
Q 038175 58 GKSNNATIFV--GALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-GFVQFANRKDAEVALQKLQGTAI--GKQTVRLSW 132 (155)
Q Consensus 58 ~~~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~-~~v~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~ 132 (155)
....+..|.+ -|--+.++.+.|..++...|.|.+|-+.+..|. |+|+|++.+.|++|-..|||..+ +-++|+|.|
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 3334444444 343456899999999999999999988876554 99999999999999999999987 457999999
Q ss_pred ccCCC
Q 038175 133 GHNPG 137 (155)
Q Consensus 133 ~~~~~ 137 (155)
+++..
T Consensus 196 AkP~r 200 (494)
T KOG1456|consen 196 AKPTR 200 (494)
T ss_pred cCcce
Confidence 98743
No 85
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=4.1e-10 Score=65.18 Aligned_cols=56 Identities=30% Similarity=0.510 Sum_probs=48.2
Q ss_pred HHHHHHHhh----ccCCeEEEE-e--eC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 76 DKDLRELFS----HFGEILSVK-I--PV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 76 ~~~l~~~f~----~~g~v~~~~-~--~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
+++|+++|+ +||.|..+. + .+ ++|++||+|.+.++|..|+..|+|..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999998884 3 22 37999999999999999999999999999999863
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.7e-10 Score=88.33 Aligned_cols=135 Identities=19% Similarity=0.324 Sum_probs=110.4
Q ss_pred cccCCCCCCHHHHHhhcccc------------eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHh----cC----------
Q 038175 2 GYCQVSDITNSILQETFSRA------------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEM----NG---------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~------------~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~----~~---------- 55 (155)
|.++|..++++.+..+|... .-+........+.+||++|.+.++|..++... .|
T Consensus 180 v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d 259 (500)
T KOG0120|consen 180 VGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHD 259 (500)
T ss_pred ccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCCceeccccc
Confidence 67899999999999999811 11222233456789999999999999998532 22
Q ss_pred -----------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEec
Q 038175 56 -----------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFA 106 (155)
Q Consensus 56 -----------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~ 106 (155)
.........+++++||..+++..+++++..||.+....+.. ++|+||.+|.
T Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~ 339 (500)
T KOG0120|consen 260 YQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYC 339 (500)
T ss_pred ccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeee
Confidence 23345778899999999999999999999999988776653 4899999999
Q ss_pred CHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 107 NRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 107 ~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
++..+..|+..|+|..+++++|.|+.+-..
T Consensus 340 dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 340 DPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred CCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 999999999999999999999999987543
No 87
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.09 E-value=1.5e-09 Score=74.52 Aligned_cols=85 Identities=21% Similarity=0.367 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEee--C-C----CcEEEEEecCHHHHHHHHHHhcCCeeC---CeEE
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP--V-G----KGCGFVQFANRKDAEVALQKLQGTAIG---KQTV 128 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~--~-~----~g~~~v~f~~~~~a~~a~~~l~~~~~~---g~~l 128 (155)
....+||||.+||.++..-+|..+|..|..-+...+. . . +.++|+.|.+...|.+|++.|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3457999999999999999999999998655554442 1 1 368999999999999999999999884 8999
Q ss_pred EEEeccCCCCCCCCC
Q 038175 129 RLSWGHNPGNKQWRG 143 (155)
Q Consensus 129 ~v~~~~~~~~~~~~~ 143 (155)
++.++++.+++..+.
T Consensus 111 hiElAKSNtK~kr~k 125 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRK 125 (284)
T ss_pred EeeehhcCcccccCC
Confidence 999999876555433
No 88
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=2.7e-10 Score=78.62 Aligned_cols=54 Identities=35% Similarity=0.469 Sum_probs=49.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|-.||++++.++|+++|+ +..|+.|+.+++|+|||||.|.+.+.|.+|++..+.
T Consensus 17 VggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p 76 (247)
T KOG0149|consen 17 VGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP 76 (247)
T ss_pred EcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC
Confidence 678999999999999999 778899999999999999999999999999976544
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.04 E-value=1.7e-09 Score=80.78 Aligned_cols=79 Identities=20% Similarity=0.434 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.....+.+||.|||++..|.+|++++.+ -|.|.+|.+.- .++++.|+|++++.+++|++.|+..++.|+.|.|.
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 3445667999999999999999999985 68999999864 48999999999999999999999999999999998
Q ss_pred eccCC
Q 038175 132 WGHNP 136 (155)
Q Consensus 132 ~~~~~ 136 (155)
-.+..
T Consensus 120 Ed~d~ 124 (608)
T KOG4212|consen 120 EDHDE 124 (608)
T ss_pred ccCch
Confidence 76543
No 90
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.01 E-value=1.8e-08 Score=74.02 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 58 GKSNNATIFVGALDSN-VSDKDLRELFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
.....+.+.|.+|... ++-+.|..+|-.||.|.+|++++. .|-|+|++-+..+.++|+..|++..+-|.+|.|.+++.
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 3457788999999975 888999999999999999998874 68999999999999999999999999999999998875
Q ss_pred C
Q 038175 136 P 136 (155)
Q Consensus 136 ~ 136 (155)
.
T Consensus 363 ~ 363 (494)
T KOG1456|consen 363 N 363 (494)
T ss_pred c
Confidence 3
No 91
>smart00360 RRM RNA recognition motif.
Probab=98.98 E-value=2.5e-09 Score=60.90 Aligned_cols=54 Identities=33% Similarity=0.568 Sum_probs=46.3
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||..+++++|+++|. .+.+.....++.++++|||+|.+.++|..|+..+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~ 60 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNG 60 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCC
Confidence 679999999999999998 344555555677899999999999999999998885
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.97 E-value=2.8e-08 Score=75.23 Aligned_cols=128 Identities=23% Similarity=0.327 Sum_probs=96.5
Q ss_pred ccCCCCCCHHHHHhhccc-------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 3 YCQVSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~~-------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
.-||+.|||+||.+||.. +.++.+. .+.+.|-|||+|++++.|+.|+..-..
T Consensus 109 RGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~ 187 (510)
T KOG4211|consen 109 RGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRA 187 (510)
T ss_pred cCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhh
Confidence 458999999999999992 2233343 456789999999999999999853211
Q ss_pred --------------------------------------------------------------------------------
Q 038175 56 -------------------------------------------------------------------------------- 55 (155)
Q Consensus 56 -------------------------------------------------------------------------------- 55 (155)
T Consensus 188 ~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~ 267 (510)
T KOG4211|consen 188 AGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHR 267 (510)
T ss_pred ccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCccc
Confidence
Q ss_pred -------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEee--C---CCcEEEEEecCHHHHHHHHHHhcCCee
Q 038175 56 -------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP--V---GKGCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 56 -------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~--~---~~g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
.........++..+||+..++.+|..+|+..-.+ .+++- . ..|-|.|+|.+.++|..|+.+ ++..+
T Consensus 268 ~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Amsk-d~anm 345 (510)
T KOG4211|consen 268 QGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMGK-DGANM 345 (510)
T ss_pred CCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhcc-CCccc
Confidence 1111233678889999999999999999876444 44442 2 368899999999999999985 77788
Q ss_pred CCeEEEEEec
Q 038175 124 GKQTVRLSWG 133 (155)
Q Consensus 124 ~g~~l~v~~~ 133 (155)
..+.+..-..
T Consensus 346 ~hrYVElFln 355 (510)
T KOG4211|consen 346 GHRYVELFLN 355 (510)
T ss_pred Ccceeeeccc
Confidence 8888776654
No 93
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.96 E-value=9.8e-09 Score=73.47 Aligned_cols=95 Identities=28% Similarity=0.515 Sum_probs=78.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-----------C--------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------S-------- 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-----------~-------- 56 (155)
|.|||.++|+++|.++|. .+.+..+..++.++|+|||+|.+.++|..|+..+++ .
T Consensus 120 v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (306)
T COG0724 120 VGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPR 199 (306)
T ss_pred EeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccc
Confidence 689999999999999999 445556767889999999999999999999999886 0
Q ss_pred --------------------CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC
Q 038175 57 --------------------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV 96 (155)
Q Consensus 57 --------------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 96 (155)
........+++.+++..+....+...|..+|.+....+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 200 SELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred cccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 1123556778888999999999999999999886666554
No 94
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.95 E-value=6e-09 Score=70.75 Aligned_cols=81 Identities=14% Similarity=0.311 Sum_probs=72.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHF-GEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~-g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l 128 (155)
.+.......++++.+|..+.+.++...|.++ |.|..+++.+ ++|||||+|++.+.|..|-+.||+..|.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 5667788889999999999999999999998 6788888865 47999999999999999999999999999999
Q ss_pred EEEeccCC
Q 038175 129 RLSWGHNP 136 (155)
Q Consensus 129 ~v~~~~~~ 136 (155)
.+.+-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99987654
No 95
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=2.9e-09 Score=64.73 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=47.2
Q ss_pred cccCCCCCCHHHHHhhccc---ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~---~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|.+++.++|.. ++-++--.+...+|.|||.|++..+|.+|+..|+|-
T Consensus 23 irNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~ 80 (124)
T KOG0114|consen 23 IRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGY 80 (124)
T ss_pred EecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccc
Confidence 6799999999999999994 444444456788999999999999999999999883
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=2.6e-09 Score=73.83 Aligned_cols=76 Identities=21% Similarity=0.529 Sum_probs=68.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCC
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 140 (155)
..+||+++|+.+.+.++..+|..||.+..+.+. .+++||+|.+..+|..|+..+++..+.+-.+.|.|++.....+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~ 77 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGR 77 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeeccccccccc
Confidence 468999999999999999999999999998888 6788999999999999999999999999889999988654333
No 97
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=4.3e-09 Score=84.47 Aligned_cols=136 Identities=19% Similarity=0.320 Sum_probs=115.2
Q ss_pred cccCCCCCCHHHHHhhcccceEE-----EcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-------------CCCCCCCc
Q 038175 2 GYCQVSDITNSILQETFSRAKVT-----IDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------SDGKSNNA 63 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~-----~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------~~~~~~~~ 63 (155)
+.||+..+++.+|+..|....++ ..+..+....|||+.|.+.+.+..|..++.+ .......+
T Consensus 377 ~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~kst~tt 456 (975)
T KOG0112|consen 377 LGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPKSTPTT 456 (975)
T ss_pred hcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccccccce
Confidence 46899999999999999933222 2222345567999999999999999888776 23567788
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEeccCCC
Q 038175 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWGHNPG 137 (155)
Q Consensus 64 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~ 137 (155)
.+++++++.+.....+...|..||.|..|.+-.+..|++|.|++...++.|++.|-|..+++ +.++|.|+....
T Consensus 457 r~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 457 RLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred eeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 99999999999999999999999999999999889999999999999999999999999975 679999987643
No 98
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=2.3e-09 Score=75.55 Aligned_cols=81 Identities=27% Similarity=0.630 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCe-e--CCeEEEEE
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTA-I--GKQTVRLS 131 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~-~--~g~~l~v~ 131 (155)
.+.++|||+=|...-+|+|++.+|+.||.+..+.+.+ ++|++||.|.+.-+|+.||+.|||-. + ....|.|.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 3678999999999999999999999999999999886 48999999999999999999999964 3 35789999
Q ss_pred eccCCCCCC
Q 038175 132 WGHNPGNKQ 140 (155)
Q Consensus 132 ~~~~~~~~~ 140 (155)
|+.....+.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 997655443
No 99
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.84 E-value=3e-09 Score=72.28 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=52.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|-||...++.++|+.+|+ ++.|.++..+++++|||||.|.+..+|+.|+..|+|..
T Consensus 18 VdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ 79 (256)
T KOG4207|consen 18 VDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAV 79 (256)
T ss_pred ecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhccee
Confidence 679999999999999999 77888999999999999999999999999999998843
No 100
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=4.4e-09 Score=69.71 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=43.2
Q ss_pred cccCCCCCCHHHHHhhcccc---eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFSRA---KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~---~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|-||+.++++.||+..|... .-+|.. ..-.|||||+|+++.+|+.|+..|+|..
T Consensus 15 VGnL~~~a~k~eLE~~F~~yG~lrsvWvA--rnPPGfAFVEFed~RDA~DAvr~LDG~~ 71 (195)
T KOG0107|consen 15 VGNLGSRATKRELERAFSKYGPLRSVWVA--RNPPGFAFVEFEDPRDAEDAVRYLDGKD 71 (195)
T ss_pred eccCCCCcchHHHHHHHHhcCcceeEEEe--ecCCCceEEeccCcccHHHHHhhcCCcc
Confidence 67999999999999999922 222221 1346899999999999999999999854
No 101
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.6e-07 Score=71.62 Aligned_cols=116 Identities=28% Similarity=0.409 Sum_probs=91.2
Q ss_pred cccCCCCCCHHHHHhhccc---ceEEEcC--C-CC--CCcc---eEEEEeCCHHHHHHHHHHhcC---------------
Q 038175 2 GYCQVSDITNSILQETFSR---AKVTIDS--N-TG--HTKG---YGFVRFGDENERSRAMIEMNG--------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~---~~~~~~~--~-~~--~~~g---~afv~f~~~~~a~~a~~~~~~--------------- 55 (155)
|--||++++|++|...|.. +.+=+-. . .+ ..+| |+|+.|+++..+...+..+.-
T Consensus 264 vGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k 343 (520)
T KOG0129|consen 264 VGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIK 343 (520)
T ss_pred ecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEecCccc
Confidence 3458999999999999992 2222211 0 01 2355 999999999999988765432
Q ss_pred --------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeeC------CCcEEEEEecCH
Q 038175 56 --------------------SDGKSNNATIFVGALDSNVSDKDLRELFS-HFGEILSVKIPV------GKGCGFVQFANR 108 (155)
Q Consensus 56 --------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~v~~~~~~~------~~g~~~v~f~~~ 108 (155)
...-...+|||||+||.-++.++|-.+|+ -||.|+.+-|-. .+|-+-|.|.+.
T Consensus 344 ~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnq 423 (520)
T KOG0129|consen 344 DKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQ 423 (520)
T ss_pred ccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeeccc
Confidence 44557899999999999999999999999 699999987754 378999999999
Q ss_pred HHHHHHHHH
Q 038175 109 KDAEVALQK 117 (155)
Q Consensus 109 ~~a~~a~~~ 117 (155)
.+-.+||+.
T Consensus 424 qsYi~AIsa 432 (520)
T KOG0129|consen 424 QAYIKAISA 432 (520)
T ss_pred HHHHHHHhh
Confidence 998888874
No 102
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=6.9e-09 Score=79.45 Aligned_cols=73 Identities=30% Similarity=0.482 Sum_probs=67.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
+.+...++|+|-|||..++.++|...|+.||.|+.++..+ .++.+||+|.|..+|+.|++.|+++++.|+.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4467889999999999999999999999999999987655 479999999999999999999999999999888
No 103
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.80 E-value=3.5e-08 Score=74.83 Aligned_cols=75 Identities=28% Similarity=0.463 Sum_probs=64.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC----C--CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----G--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~----~--~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
....+|||.|||.+++..+|+++|..||.|+...|.. . ..++||+|.+...++.||.. +-..+++++|.|.-.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 3455599999999999999999999999998876643 2 27899999999999999986 566789999999987
Q ss_pred cC
Q 038175 134 HN 135 (155)
Q Consensus 134 ~~ 135 (155)
++
T Consensus 365 ~~ 366 (419)
T KOG0116|consen 365 RP 366 (419)
T ss_pred cc
Confidence 65
No 104
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=2.3e-09 Score=85.53 Aligned_cols=133 Identities=15% Similarity=0.186 Sum_probs=109.2
Q ss_pred CcccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCCCC
Q 038175 1 NGYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNV 74 (155)
Q Consensus 1 ~v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~~~ 74 (155)
+|+||+..+.+.+|...|. .+.+....+.+..+|+|+++|..++++.+|+.-..+.. .....++|.|.|...
T Consensus 671 fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~--~gK~~v~i~g~pf~g 748 (881)
T KOG0128|consen 671 FVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF--FGKISVAISGPPFQG 748 (881)
T ss_pred HHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh--hhhhhhheeCCCCCC
Confidence 4789999999999999998 22233344567889999999999999999987554422 227789999999999
Q ss_pred CHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 75 SDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 75 ~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
+.++++.+++.+|.+...+++. .+|.+++.|.+...++.++...+...+....+.|..+.+
T Consensus 749 t~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 749 TKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred chHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 9999999999999998887653 378999999999999999988888877777777776554
No 105
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.76 E-value=4e-08 Score=75.93 Aligned_cols=77 Identities=22% Similarity=0.471 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
....+.|+|.+|...+...+|+.+|++||.|.-.++..+ +.|+||++.+...|.++|+.||.++|.|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 346788999999999999999999999999988877642 67999999999999999999999999999999998
Q ss_pred ccC
Q 038175 133 GHN 135 (155)
Q Consensus 133 ~~~ 135 (155)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 875
No 106
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.76 E-value=2e-08 Score=71.32 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=41.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||+++||++|+++|+ .+.++.+ +.++|||||+|.+.++|+.|+. |+|
T Consensus 9 VgNLs~~tTE~dLrefFS~~G~I~~V~I~~d---~~~~GfAFVtF~d~eaAe~All-LnG 64 (260)
T PLN03120 9 VSNVSLKATERDIKEFFSFSGDIEYVEMQSE---NERSQIAYVTFKDPQGAETALL-LSG 64 (260)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeec---CCCCCEEEEEeCcHHHHHHHHH-hcC
Confidence 789999999999999999 3344443 2367999999999999999995 877
No 107
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.76 E-value=4e-10 Score=83.75 Aligned_cols=132 Identities=18% Similarity=0.272 Sum_probs=108.0
Q ss_pred ccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------CCCCCCCcEEEEc
Q 038175 3 YCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------SDGKSNNATIFVG 68 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~--------------~~~~~~~~~l~v~ 68 (155)
-||.+.++..+|..+|.+..+......-...|||||.+.+..+|.+|++.+++ .+.....+.+-+.
T Consensus 7 gnL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk~Qir 86 (584)
T KOG2193|consen 7 GNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRKIQIR 86 (584)
T ss_pred cccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhhhhHh
Confidence 48999999999999999554433322233468999999999999999999887 2334466779999
Q ss_pred CCCCCCCHHHHHHHhhccCCeEEEEeeC-C--CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 69 ALDSNVSDKDLRELFSHFGEILSVKIPV-G--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 69 ~l~~~~~~~~l~~~f~~~g~v~~~~~~~-~--~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
|+|....|+.+..++..||.|..+.... + ....-++|...+.+..|+..++|..+....+++.|--
T Consensus 87 nippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 87 NIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred cCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 9999999999999999999998876532 1 3445678899999999999999999999999999853
No 108
>smart00362 RRM_2 RNA recognition motif.
Probab=98.75 E-value=3.5e-08 Score=56.27 Aligned_cols=52 Identities=35% Similarity=0.592 Sum_probs=43.0
Q ss_pred cccCCCCCCHHHHHhhccc------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++++++|+++|.. +.+..+. +.++++|||+|.+.++|+.|+..+++
T Consensus 4 i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 5789999999999999992 2333332 56789999999999999999998876
No 109
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.72 E-value=1.2e-07 Score=67.00 Aligned_cols=80 Identities=31% Similarity=0.509 Sum_probs=69.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
......+|+|.|||..+.++||+++|..||.+..+.+.- +.|.|-|.|...++|..|++.++|..++|+.+++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 445558899999999999999999999999888776643 358999999999999999999999999999999888
Q ss_pred ccCCC
Q 038175 133 GHNPG 137 (155)
Q Consensus 133 ~~~~~ 137 (155)
..++.
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 76543
No 110
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=1.5e-08 Score=73.23 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=46.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|+|||+.+-|.||+.+|. ++.||.+ ...|||||||.|++.+||++|-.+|||
T Consensus 101 VSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHg 158 (376)
T KOG0125|consen 101 VSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHG 158 (376)
T ss_pred eecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhc
Confidence 899999999999999999 4444443 458999999999999999999999999
No 111
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.66 E-value=6.1e-08 Score=67.92 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=42.3
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.||++.+||++|+++|+ .+.++.+ +.++++|||+|++++.|+.|+ .|+|
T Consensus 10 V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnG 65 (243)
T PLN03121 10 VTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSG 65 (243)
T ss_pred EecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCC
Confidence 789999999999999999 3444444 456689999999999999998 5777
No 112
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.65 E-value=3.9e-07 Score=55.66 Aligned_cols=77 Identities=17% Similarity=0.350 Sum_probs=62.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeC----CeEEE
Q 038175 62 NATIFVGALDSNVSDKDLRELFSHF--GEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIG----KQTVR 129 (155)
Q Consensus 62 ~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~----g~~l~ 129 (155)
.+||.+.|||...+.+.|.+.+... |..-.+-++- +.|||||.|.+++.|..-...++|..+. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3689999999999999999998864 4444444442 3799999999999999999999999874 45677
Q ss_pred EEeccCCCC
Q 038175 130 LSWGHNPGN 138 (155)
Q Consensus 130 v~~~~~~~~ 138 (155)
|.||+-++.
T Consensus 81 i~yAriQG~ 89 (97)
T PF04059_consen 81 ISYARIQGK 89 (97)
T ss_pred EehhHhhCH
Confidence 999876653
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.64 E-value=4.9e-08 Score=74.45 Aligned_cols=54 Identities=31% Similarity=0.474 Sum_probs=51.4
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.+++|++|.++|+ +++++.|+.+|..+||||++|.+.++|.+|++.|+|
T Consensus 23 vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg 82 (435)
T KOG0108|consen 23 VGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNG 82 (435)
T ss_pred ecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCC
Confidence 679999999999999999 778888999999999999999999999999999998
No 114
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.62 E-value=2.4e-07 Score=67.53 Aligned_cols=79 Identities=20% Similarity=0.361 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCC
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILS--------VKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGK 125 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g 125 (155)
...+..|||.|||.+++.+++.++|+++|.|.+ |++++. +|-++|.|...++...|+..|++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 345677999999999999999999999998765 556543 6889999999999999999999999999
Q ss_pred eEEEEEeccCCC
Q 038175 126 QTVRLSWGHNPG 137 (155)
Q Consensus 126 ~~l~v~~~~~~~ 137 (155)
+.|+|+-|+-+.
T Consensus 211 ~~~rVerAkfq~ 222 (382)
T KOG1548|consen 211 KKLRVERAKFQM 222 (382)
T ss_pred cEEEEehhhhhh
Confidence 999999887543
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=98.62 E-value=1.2e-07 Score=54.79 Aligned_cols=46 Identities=24% Similarity=0.578 Sum_probs=36.4
Q ss_pred HHHHHhhcc----------cce-EEEcCCC--CCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 11 NSILQETFS----------RAK-VTIDSNT--GHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 11 e~~l~~~f~----------~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
+++|+++|+ ++. ++.+..+ +.++|+|||.|.+.++|.+|+..|+|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 577888776 232 4555555 788999999999999999999999883
No 116
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=6.3e-08 Score=61.17 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=46.2
Q ss_pred cccCCCCCCHHHHHhhccc---ce-EE--EcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFSR---AK-VT--IDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~---~~-~~--~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.||+.-++|++|.++|+. ++ |+ .++.+...-|||||+|.+.++|+.|++-+++..
T Consensus 41 VgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr 102 (153)
T KOG0121|consen 41 VGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR 102 (153)
T ss_pred EeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc
Confidence 6799999999999999993 32 22 255566778999999999999999999888843
No 117
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=6e-08 Score=61.82 Aligned_cols=54 Identities=24% Similarity=0.409 Sum_probs=48.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.++-.++||++|.+.|. .+.+..++.+|-.+|||+|+|++..+|++|+..+||
T Consensus 77 VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng 136 (170)
T KOG0130|consen 77 VTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNG 136 (170)
T ss_pred EeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccc
Confidence 667889999999999999 445556777889999999999999999999999998
No 118
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.56 E-value=3e-07 Score=52.59 Aligned_cols=55 Identities=31% Similarity=0.557 Sum_probs=44.0
Q ss_pred cccCCCCCCHHHHHhhccc------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFSR------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.+||..+++++|.++|.. +.+..+.. ...+++|||+|.+.++|..|+..+++..
T Consensus 4 i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~ 64 (74)
T cd00590 4 VGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKE 64 (74)
T ss_pred EeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCe
Confidence 5789999999999999982 33333332 2557899999999999999999888743
No 119
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.54 E-value=4.3e-07 Score=56.55 Aligned_cols=69 Identities=32% Similarity=0.514 Sum_probs=45.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCC-----eeCCeEEEEE
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT-----AIGKQTVRLS 131 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~-----~~~g~~l~v~ 131 (155)
..|.+.+++..++.++|+..|++||.|.+|.+..+...|+|.|.+.+.|+.|+..+... .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46788889999999999999999999999999998889999999999999999877543 4555554444
No 120
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.52 E-value=4.6e-07 Score=64.01 Aligned_cols=79 Identities=23% Similarity=0.399 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
....+...+|++|+...++.++++..|+.+|.+..+.++. .+++++|+|.+.+.++.++. |++..+.++.++|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 4567889999999999999888999999999998877764 37899999999999999999 9999999999999
Q ss_pred EeccCC
Q 038175 131 SWGHNP 136 (155)
Q Consensus 131 ~~~~~~ 136 (155)
++.+..
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 998754
No 121
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.49 E-value=4.9e-07 Score=71.45 Aligned_cols=79 Identities=41% Similarity=0.751 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEee--C-------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP--V-------GKGCGFVQFANRKDAEVALQKLQGTAIGKQT 127 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~--~-------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 127 (155)
..++..+.||++||+..++++.|...|..||.|..+++. + .+.++||-|-+..+|++|++.|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 346788999999999999999999999999999888765 2 3578999999999999999999999999999
Q ss_pred EEEEeccC
Q 038175 128 VRLSWGHN 135 (155)
Q Consensus 128 l~v~~~~~ 135 (155)
+++-|++.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999964
No 122
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=3.4e-07 Score=65.56 Aligned_cols=54 Identities=28% Similarity=0.461 Sum_probs=49.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.-|+.+++|.+|+..|. .+.++.+..+++++|||||+|++..+...|.+..+|
T Consensus 106 v~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG 165 (335)
T KOG0113|consen 106 VARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG 165 (335)
T ss_pred eeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC
Confidence 456899999999999999 678888989999999999999999999999988776
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.43 E-value=7.7e-07 Score=64.84 Aligned_cols=108 Identities=31% Similarity=0.457 Sum_probs=89.6
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHHhcC-------------------------CCCCCCCcEEE-EcCCCCCCCHHHHHH
Q 038175 28 NTGHTKGYGFVRFGDENERSRAMIEMNG-------------------------SDGKSNNATIF-VGALDSNVSDKDLRE 81 (155)
Q Consensus 28 ~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------------~~~~~~~~~l~-v~~l~~~~~~~~l~~ 81 (155)
....++|++.+.|...+.+..++..... ........+++ +++++..+++++|+.
T Consensus 125 ~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~ 204 (285)
T KOG4210|consen 125 DSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKE 204 (285)
T ss_pred cccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhh
Confidence 4457899999999999999999875432 12223445555 999999999999999
Q ss_pred HhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 82 LFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 82 ~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
.|..+|.+..++++. .++++++.|.....+..++.. +...+.++++.+.+..+.
T Consensus 205 ~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 205 HFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 999999999999875 268999999999999999887 788899999999998764
No 124
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.43 E-value=2.6e-06 Score=50.08 Aligned_cols=68 Identities=26% Similarity=0.482 Sum_probs=47.7
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhhccC-CeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 63 ATIFVGALDSNVSDKD----LRELFSHFG-EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
..|+|.|||....... |++++..+| .|..+ . .+.|.|.|.+.+.|.+|.+.|+|-..-|++|.|+|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999999877654 556666776 56655 2 5789999999999999999999999999999999974
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.39 E-value=6.2e-07 Score=61.10 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=45.2
Q ss_pred cCCCCCCHHHHHhhcc-------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 4 CQVSDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 4 nlp~~~te~~l~~~f~-------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
-+|.-+.+.++..+|. ..++.+...||.|+|||||+|++.+.|..|-+.||+-
T Consensus 56 ~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY 115 (214)
T KOG4208|consen 56 HIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY 115 (214)
T ss_pred ccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh
Confidence 3578888999999988 3344467789999999999999999999999999993
No 126
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=2.3e-08 Score=66.79 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=50.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|-+||.+.||.||.-.|+ .+-++++..||.|+||||+.|+++.+...|+..++|
T Consensus 40 iggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NG 99 (219)
T KOG0126|consen 40 IGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNG 99 (219)
T ss_pred ECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCC
Confidence 468999999999999999 667788999999999999999999999999998888
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.36 E-value=7.3e-07 Score=62.61 Aligned_cols=106 Identities=24% Similarity=0.385 Sum_probs=85.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhcC---------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCC
Q 038175 30 GHTKGYGFVRFGDENERSRAMIEMNG---------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE 88 (155)
Q Consensus 30 ~~~~g~afv~f~~~~~a~~a~~~~~~---------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 88 (155)
+..++++|+.|.....-.++-.+-++ ........+||.+.|..+++++.|-..|.+|-.
T Consensus 137 ~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfps 216 (290)
T KOG0226|consen 137 QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPS 216 (290)
T ss_pred CccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccc
Confidence 45678999999888776666544333 234567789999999999999999999999876
Q ss_pred eEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 89 ILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 89 v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
....++.+ ++||+||.|.+..++..|+..|+|..++.+.|+++-+..
T Consensus 217 f~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 217 FQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred hhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 55555543 579999999999999999999999999999998876543
No 128
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=5.4e-07 Score=69.33 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=87.2
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcC-CCCCCcceEEEEeCCHHHHHHHHHHhcC-------------------------
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDS-NTGHTKGYGFVRFGDENERSRAMIEMNG------------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~~~~------------------------- 55 (155)
|.|||..+++++|+.+|+..+.++.. .+...+|..||+|.|..+|+.|++++++
T Consensus 80 v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 159 (549)
T KOG4660|consen 80 VFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRAMGLQSGTS 159 (549)
T ss_pred EEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccccchhcccch
Confidence 68999999999999999944333322 2456789999999999999999999877
Q ss_pred ------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCee
Q 038175 56 ------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 56 ------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
++..-....++. .|+...+...++..++.+|.+..-....-.-.-+++|.+..++..+...+ |..+
T Consensus 160 ~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~ 237 (549)
T KOG4660|consen 160 FLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPGRETPLLNHQRFVEFADNRSYAFSEPRG-GFLI 237 (549)
T ss_pred hhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCccccccccchhhhhhhhhccccchhhcccCC-ceec
Confidence 222223334433 37777777667777777777655222211223566666666664444433 5566
Q ss_pred CCeEEEEEeccC
Q 038175 124 GKQTVRLSWGHN 135 (155)
Q Consensus 124 ~g~~l~v~~~~~ 135 (155)
.+....++++.+
T Consensus 238 s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 238 SNSSGVITFSGP 249 (549)
T ss_pred CCCCceEEecCC
Confidence 666666777655
No 129
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=2e-07 Score=64.08 Aligned_cols=75 Identities=27% Similarity=0.390 Sum_probs=66.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
.+..++|||+|+...++++-|.++|-+.|.|.++.|+.. ..+|||.|.+.....-|++.++|..+.+..+.+++.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345689999999999999999999999999999999863 348999999999999999999999998888777764
No 130
>PLN03213 repressor of silencing 3; Provisional
Probab=98.34 E-value=9.5e-07 Score=67.49 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=42.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCH--HHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDE--NERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~~~~ 55 (155)
|-||++++|+++|...|. .+.+++ .+| +|||||+|... .++.+|+..|+|
T Consensus 15 VGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNG 72 (759)
T PLN03213 15 VGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNG 72 (759)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcC
Confidence 679999999999999999 455552 344 89999999987 679999999999
No 131
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.32 E-value=1.1e-06 Score=64.55 Aligned_cols=79 Identities=24% Similarity=0.503 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
..++|+|++|+-.++++.|++.|.+||.|..+.+.+ +++++||+|++.+....++.. .-+.+.|+.|.+.-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999998876 379999999999998888874 4567999999888776
Q ss_pred CCCCCC
Q 038175 135 NPGNKQ 140 (155)
Q Consensus 135 ~~~~~~ 140 (155)
+.....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 654433
No 132
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.30 E-value=7.6e-08 Score=71.16 Aligned_cols=122 Identities=18% Similarity=0.092 Sum_probs=92.7
Q ss_pred cccCCCCCCHHHHHhhcccc------eEEE---cCCCCCCcceEEEEeCCHHHHHHHHHHhcC-----------------
Q 038175 2 GYCQVSDITNSILQETFSRA------KVTI---DSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~------~~~~---~~~~~~~~g~afv~f~~~~~a~~a~~~~~~----------------- 55 (155)
|.||.+.+|.++|+.+|..+ .++- +.........|||.|.+...+..|..-.+-
T Consensus 12 vanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~ 91 (479)
T KOG4676|consen 12 VANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVI 91 (479)
T ss_pred ecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCC
Confidence 78999999999999999922 2221 111223456899999999988888754333
Q ss_pred -----------------------------------------------------CCCCCCCcEEEEcCCCCCCCHHHHHHH
Q 038175 56 -----------------------------------------------------SDGKSNNATIFVGALDSNVSDKDLREL 82 (155)
Q Consensus 56 -----------------------------------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~ 82 (155)
.......++++|++|+..+...++...
T Consensus 92 p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~ 171 (479)
T KOG4676|consen 92 PDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGES 171 (479)
T ss_pred ccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhh
Confidence 111123478999999999999999999
Q ss_pred hhccCCeEEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCCeeC
Q 038175 83 FSHFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIG 124 (155)
Q Consensus 83 f~~~g~v~~~~~~~--~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 124 (155)
|+.+|.|.+.++.. ...+|.++|........|+. ++|..+.
T Consensus 172 f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 172 FERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999999988864 35789999999888888887 5887765
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.28 E-value=1.7e-06 Score=68.37 Aligned_cols=135 Identities=11% Similarity=0.023 Sum_probs=103.6
Q ss_pred CcccCCCCCCHHHHHhhcc-----cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 1 NGYCQVSDITNSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 1 ~v~nlp~~~te~~l~~~f~-----~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|+.-++.+..+.+++++|. ...+..+...+...|-++|.|....++++|+..-+.
T Consensus 315 ~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a 394 (944)
T KOG4307|consen 315 NYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGA 394 (944)
T ss_pred eecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccC
Confidence 3445688999999999999 344445544444578899999999999999864222
Q ss_pred ---------------------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEeeC---C-
Q 038175 56 ---------------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS-VKIPV---G- 97 (155)
Q Consensus 56 ---------------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~---~- 97 (155)
+....-...|||..||..+.+.++.++|..-..|+. |.+.. +
T Consensus 395 ~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~ 474 (944)
T KOG4307|consen 395 PPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDL 474 (944)
T ss_pred ccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCccc
Confidence 234456789999999999999999999998777776 55443 2
Q ss_pred -CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 98 -KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 98 -~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
++.|||.|..++++..|...-+...++.+.|+|.-...
T Consensus 475 ~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 475 LRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred ccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 57899999999998888776566667888888876543
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.18 E-value=6.6e-06 Score=50.28 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=47.1
Q ss_pred cccCCCCCCHHHHHhhcc--------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS--------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
+.|||...|.+.|.+++. =.-++.|..++.+.|||||-|.+++.|.+....++|
T Consensus 6 irNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 6 IRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred EecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcC
Confidence 479999999999999988 234556767788999999999999999999999988
No 135
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.15 E-value=9.9e-06 Score=60.17 Aligned_cols=127 Identities=26% Similarity=0.338 Sum_probs=88.9
Q ss_pred ccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC---------------------
Q 038175 3 YCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------------- 55 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~--------------------- 55 (155)
.-||+..++.++-.+|. .-..+-...-+...|.|.|.|.+.+.-+-|++.-..
T Consensus 66 Rglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~ia 145 (508)
T KOG1365|consen 66 RGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIA 145 (508)
T ss_pred cCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEec
Confidence 35799999999999999 112222223456678999999999988888764211
Q ss_pred ---------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcc----CC---eEEEEeeCC--CcEEEEEecCHHHHHHHHHH
Q 038175 56 ---------SDGKSNNATIFVGALDSNVSDKDLRELFSHF----GE---ILSVKIPVG--KGCGFVQFANRKDAEVALQK 117 (155)
Q Consensus 56 ---------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~----g~---v~~~~~~~~--~g~~~v~f~~~~~a~~a~~~ 117 (155)
......--.|.+.+||++.++.++..+|.+. |. |..++-+.+ .|-||+.|...++|+.|+.+
T Consensus 146 gg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 146 GGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred CCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 1112334566779999999999999999743 22 333333322 58899999999999999985
Q ss_pred hcCCeeCCeEEEE
Q 038175 118 LQGTAIGKQTVRL 130 (155)
Q Consensus 118 l~~~~~~g~~l~v 130 (155)
|...++-|.|++
T Consensus 226 -hrq~iGqRYIEl 237 (508)
T KOG1365|consen 226 -HRQNIGQRYIEL 237 (508)
T ss_pred -HHHHHhHHHHHH
Confidence 666666665543
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.15 E-value=3.2e-06 Score=59.47 Aligned_cols=52 Identities=44% Similarity=0.747 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 5 QVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 5 lp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|..+++++.|-..|. ...++++..+++++||+||.|.+..++.+||++|+|.
T Consensus 198 lgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk 255 (290)
T KOG0226|consen 198 LGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK 255 (290)
T ss_pred ccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc
Confidence 567899999999888 6788999999999999999999999999999999983
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.02 E-value=3e-06 Score=58.41 Aligned_cols=120 Identities=30% Similarity=0.415 Sum_probs=90.6
Q ss_pred cccCCCCCCHHHHHhhccc----ceEEE-cCCCCCCcceEEEEeCCHHHHHHHHHHhcC--CCCCCCCcEEEEcC----C
Q 038175 2 GYCQVSDITNSILQETFSR----AKVTI-DSNTGHTKGYGFVRFGDENERSRAMIEMNG--SDGKSNNATIFVGA----L 70 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~----~~~~~-~~~~~~~~g~afv~f~~~~~a~~a~~~~~~--~~~~~~~~~l~v~~----l 70 (155)
|-|+...++|+-|.++|-. +++.. +...+..+ ||||.|++...+.-|+.-++| -...+...++..|+ |
T Consensus 14 v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~shapl 92 (267)
T KOG4454|consen 14 VQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNSHAPL 92 (267)
T ss_pred HHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCCCcchh
Confidence 5688999999999999992 22222 22223334 999999999999999999999 34566677777888 7
Q ss_pred CCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCe
Q 038175 71 DSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTA 122 (155)
Q Consensus 71 ~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~ 122 (155)
...++++-+...|+..|.+..+++.. ++.+.++.+....+...++...++..
T Consensus 93 d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 93 DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 77888888899999999888887764 35677887777666666666655544
No 138
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.00 E-value=2.9e-05 Score=42.18 Aligned_cols=52 Identities=31% Similarity=0.584 Sum_probs=43.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHH
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 115 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~ 115 (155)
+.|-|.+.+....+ .+...|..+|.|..+.+.......+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 45778888887554 45568889999999999877889999999999999885
No 139
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.98 E-value=1e-05 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.740 Sum_probs=22.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 33 KGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 33 ~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
+++|||+|.+.++|..|+..+++..
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~ 45 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQ 45 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 5899999999999999999998854
No 140
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.96 E-value=3.5e-05 Score=56.52 Aligned_cols=77 Identities=16% Similarity=0.456 Sum_probs=62.8
Q ss_pred CCCCcEEEEcCCCCCCCHHH----H--HHHhhccCCeEEEEeeCC-------Cc--EEEEEecCHHHHHHHHHHhcCCee
Q 038175 59 KSNNATIFVGALDSNVSDKD----L--RELFSHFGEILSVKIPVG-------KG--CGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~----l--~~~f~~~g~v~~~~~~~~-------~g--~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
.....-+||-+||..+..++ | .++|.+||.|.+|-+.+. .+ ..+|.|.+.++|.++|...+|..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 34566789999998755443 3 368999999999988752 12 359999999999999999999999
Q ss_pred CCeEEEEEeccC
Q 038175 124 GKQTVRLSWGHN 135 (155)
Q Consensus 124 ~g~~l~v~~~~~ 135 (155)
+|+.|+..|...
T Consensus 191 DGr~lkatYGTT 202 (480)
T COG5175 191 DGRVLKATYGTT 202 (480)
T ss_pred cCceEeeecCch
Confidence 999999999865
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.89 E-value=2.6e-05 Score=55.32 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=46.3
Q ss_pred CcccCCCCCCHHHHHhhcccc-eE----EEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 1 NGYCQVSDITNSILQETFSRA-KV----TIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 1 ~v~nlp~~~te~~l~~~f~~~-~~----~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
||.|||..++++||+++|.+. .+ +-....|.+.|.|-|.|...++|..|++.+++
T Consensus 87 ~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g 146 (243)
T KOG0533|consen 87 NVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG 146 (243)
T ss_pred eeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC
Confidence 689999999999999999944 11 11223578899999999999999999999999
No 142
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.87 E-value=5.2e-05 Score=57.11 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=55.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-------------------CcEEEEEecCHHHHHHHHH
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-------------------KGCGFVQFANRKDAEVALQ 116 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-------------------~g~~~v~f~~~~~a~~a~~ 116 (155)
..+....++|.+.|||.+-.-+.|.++|+.+|.|+.|++-+. +-+|+|+|+..+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 344568999999999999888999999999999999998542 3568999999999999999
Q ss_pred HhcC
Q 038175 117 KLQG 120 (155)
Q Consensus 117 ~l~~ 120 (155)
.|+.
T Consensus 305 ~~~~ 308 (484)
T KOG1855|consen 305 LLNP 308 (484)
T ss_pred hhch
Confidence 8754
No 143
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.85 E-value=0.0001 Score=45.34 Aligned_cols=72 Identities=26% Similarity=0.321 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-------------eeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCe-
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVK-------------IPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQ- 126 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~-------------~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~- 126 (155)
...-|.|-+.|.. ....+.+.|++||.|.... .+.......|+|+++.+|++|+.. ||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3455778888988 4557788999999987764 455678899999999999999985 99999875
Q ss_pred EEEEEecc
Q 038175 127 TVRLSWGH 134 (155)
Q Consensus 127 ~l~v~~~~ 134 (155)
.+-|.|.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45577764
No 144
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.84 E-value=4.1e-05 Score=56.37 Aligned_cols=81 Identities=27% Similarity=0.386 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEeeC------CCcEEEEEecCHHHHHHHHHHhcCCee
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILS--------VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
......++||-++|..+++++|.++|.++|.|.. +.+.+ .++-|.|.|+++..|+.|+.-+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3567889999999999999999999999987754 23332 378999999999999999999999999
Q ss_pred CCeEEEEEeccCCCC
Q 038175 124 GKQTVRLSWGHNPGN 138 (155)
Q Consensus 124 ~g~~l~v~~~~~~~~ 138 (155)
.+.+|+|.+++..+.
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999999987654
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.79 E-value=5.5e-05 Score=57.78 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=45.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++++.+|+++|+ ..++......+.+.+||||+|.+...++.|+..- +.....++|+|
T Consensus 293 V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl~V 361 (419)
T KOG0116|consen 293 VKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKLNV 361 (419)
T ss_pred eecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCeeEEE
Confidence 679999999999999999 3333333222344599999999999999998643 44455555554
No 146
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.76 E-value=2e-05 Score=55.51 Aligned_cols=67 Identities=24% Similarity=0.457 Sum_probs=59.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC----------------C--cEEEEEecCHHHHHHHHHHhcCCe
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----------------K--GCGFVQFANRKDAEVALQKLQGTA 122 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~----------------~--g~~~v~f~~~~~a~~a~~~l~~~~ 122 (155)
....||+++||..+...-|+++|+.||.|-+|.+.+. . .-+.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 6789999999999999999999999999999988641 1 237899999999999999999999
Q ss_pred eCCeE
Q 038175 123 IGKQT 127 (155)
Q Consensus 123 ~~g~~ 127 (155)
++|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 147
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=3.1e-05 Score=57.11 Aligned_cols=62 Identities=24% Similarity=0.337 Sum_probs=52.7
Q ss_pred cCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 4 CQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 4 nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
-|-+-+|+++|.-+|+ +|.++++..+|.+..||||+|++.++.+.|.-+|.+.. +..+.|+|
T Consensus 246 KLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL--IDDrRIHV 313 (479)
T KOG0415|consen 246 KLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL--IDDRRIHV 313 (479)
T ss_pred ecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee--eccceEEe
Confidence 3567789999999999 89999999999999999999999999999999887732 34455655
No 148
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.3e-05 Score=54.25 Aligned_cols=54 Identities=22% Similarity=0.479 Sum_probs=46.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|--|..++||.-|...|- .+.++.+-.+.+.+|||||+|.-.++|..|+..|++
T Consensus 15 VGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne 74 (298)
T KOG0111|consen 15 VGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE 74 (298)
T ss_pred eccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCch
Confidence 345678999999998887 667777777788999999999999999999998887
No 149
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.63 E-value=0.00076 Score=44.09 Aligned_cols=75 Identities=23% Similarity=0.407 Sum_probs=52.6
Q ss_pred CCCCcEEEEcCCC----C--CCCH---HHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 59 KSNNATIFVGALD----S--NVSD---KDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 59 ~~~~~~l~v~~l~----~--~~~~---~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
.++..|+.|.-.. . .+.+ .+|.+.|..||.+.-+++. .+.-+|+|.+-..|.+|+. ++|.+++|+.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv--~~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV--GDTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE--TTCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe--CCeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 5566777775444 1 1222 3577788899998888887 4578999999999999998 799999999999
Q ss_pred EEeccCC
Q 038175 130 LSWGHNP 136 (155)
Q Consensus 130 v~~~~~~ 136 (155)
|+...+.
T Consensus 101 i~LKtpd 107 (146)
T PF08952_consen 101 IRLKTPD 107 (146)
T ss_dssp EEE----
T ss_pred EEeCCcc
Confidence 9997653
No 150
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.58 E-value=0.00032 Score=56.56 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=46.7
Q ss_pred ccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 3 YCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
--||..++|+||.++|+++.-+........++||||.+...++|.+|+.+|++..
T Consensus 427 G~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~k 481 (894)
T KOG0132|consen 427 GGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVK 481 (894)
T ss_pred ccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhccc
Confidence 3579999999999999977666655556788999999999999999999998643
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.57 E-value=0.00028 Score=41.61 Aligned_cols=65 Identities=20% Similarity=0.175 Sum_probs=39.2
Q ss_pred CcccCCCCCCHHHHHhhcc----cc--eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCC
Q 038175 1 NGYCQVSDITNSILQETFS----RA--KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDS 72 (155)
Q Consensus 1 ~v~nlp~~~te~~l~~~f~----~~--~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~ 72 (155)
.|+|||.+.+...++.-.. .| +++.- +.+.|.|.|.+++.|.+|.+.|.|+. .-...|.|.-.|.
T Consensus 6 ~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEd--VfG~kI~v~~~~~ 76 (90)
T PF11608_consen 6 YVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGED--VFGNKISVSFSPK 76 (90)
T ss_dssp EEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT----SSSS--EEESS--
T ss_pred EEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccc--cccceEEEEEcCC
Confidence 4899999999888876666 33 33332 23689999999999999999998843 3344455544443
No 152
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.47 E-value=0.00058 Score=54.67 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=61.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEI-LSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
.+..+.|-+.|.|++++.+||.++|.-|-.. -.|.+.. ..|-|.|-|++.+.|.+|...|+++.|..+++.+..
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4556688899999999999999999998543 2233332 268899999999999999999999999999998764
No 153
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.42 E-value=0.0016 Score=36.36 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc---CCeEEEEeeCCCcEEEEEecCHHHHHHHHHHh
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHF---GEILSVKIPVGKGCGFVQFANRKDAEVALQKL 118 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~---g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l 118 (155)
.....|+|.|+. .++.++|+.+|..| ....++.+..+ ..|-|.|.+.+.|.+|+..|
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 456789999875 47889999999998 24567888765 56999999999999998754
No 154
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.37 E-value=0.00074 Score=48.81 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=50.4
Q ss_pred HHHHHHHhhccCCeEEEEeeCC-------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 76 DKDLRELFSHFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 76 ~~~l~~~f~~~g~v~~~~~~~~-------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
+++++..+.+||.|.+|.+... .--.||+|...++|.+|+-.|||..|+|+.++..|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4678888999999998877532 2347999999999999999999999999999988864
No 155
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.34 E-value=0.00025 Score=52.20 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=48.4
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|-+|-..++|++|++.|..++.++....-..+++|||+|.+.+.|+.|.++.-+ ...+.+.+|.|
T Consensus 233 Ig~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~Rl~i 297 (377)
T KOG0153|consen 233 IGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFN-KLVINGFRLKI 297 (377)
T ss_pred ecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcc-eeeecceEEEE
Confidence 346666999999999999665555544445567999999999999999987655 44455555555
No 156
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.22 E-value=0.00047 Score=54.14 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=66.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCCee---CCeEEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFG-EILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAI---GKQTVRL 130 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~-~~g~~~v~f~~~~~a~~a~~~l~~~~~---~g~~l~v 130 (155)
+........|+|.||-.-++...|+.++.+-| .|... |+. -+..|||.|.+.+.|......|||..+ +.+.|.+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 45667889999999999999999999999655 55554 543 378999999999999999999999876 5678999
Q ss_pred EeccC
Q 038175 131 SWGHN 135 (155)
Q Consensus 131 ~~~~~ 135 (155)
.|...
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 99764
No 157
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.22 E-value=0.0029 Score=37.30 Aligned_cols=60 Identities=27% Similarity=0.436 Sum_probs=43.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~ 119 (155)
+.+....+|--..|..+...||.++|+.||.|. |.+.. ...|||.+...+.|..++..+.
T Consensus 4 ~~P~RdHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~-dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 4 PQPSRDHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIN-DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp ---SGCCEEEEE--TT--HHHHHHHCCCCCCEE-EEEEC-TTEEEEEECCCHHHHHHHHHHT
T ss_pred CCCCcceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEc-CCcEEEEeecHHHHHHHHHHhc
Confidence 445555566556999999999999999999875 44444 4779999999999999988775
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0066 Score=47.73 Aligned_cols=97 Identities=24% Similarity=0.324 Sum_probs=67.8
Q ss_pred EEEEeCCHHHHH-HHHHHhcCCCCCCCCcEEEEcCCCCCCC--H----HHHHHHhhccCCeEEEEeeC-----CCcEEEE
Q 038175 36 GFVRFGDENERS-RAMIEMNGSDGKSNNATIFVGALDSNVS--D----KDLRELFSHFGEILSVKIPV-----GKGCGFV 103 (155)
Q Consensus 36 afv~f~~~~~a~-~a~~~~~~~~~~~~~~~l~v~~l~~~~~--~----~~l~~~f~~~g~v~~~~~~~-----~~g~~~v 103 (155)
+||.=.+.++-- ..+...+-..+ .-...|+|.|+|---. . ..|..+|+++|.+....++. .+|+.|+
T Consensus 32 ~fvd~v~de~l~~Dll~k~p~~~e-g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~ 110 (698)
T KOG2314|consen 32 GFVDDVDDEDLVGDLLEKRPVTAE-GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFV 110 (698)
T ss_pred ccccccchhhhhhHHHhhCcCccC-CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEE
Confidence 455544444433 33333333333 5566778999997532 2 35667899999998888874 2799999
Q ss_pred EecCHHHHHHHHHHhcCCeeC-CeEEEEEec
Q 038175 104 QFANRKDAEVALQKLQGTAIG-KQTVRLSWG 133 (155)
Q Consensus 104 ~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~ 133 (155)
+|.+...|+.|++.|||..+. .++..|..-
T Consensus 111 E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 111 EYASMRDAKKAVKSLNGKRLDKNHTFFVRLF 141 (698)
T ss_pred EecChhhHHHHHHhcccceecccceEEeehh
Confidence 999999999999999999875 566666643
No 159
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.10 E-value=0.001 Score=52.34 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=46.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|+-|...+-..+|.++|+ ..+|+++..+...++|+||.+.+.++|.++|.-|+.
T Consensus 410 VSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHr 469 (940)
T KOG4661|consen 410 VSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHR 469 (940)
T ss_pred eeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhh
Confidence 556788888899999999 567777777788899999999999999999986654
No 160
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.94 E-value=0.00053 Score=48.55 Aligned_cols=57 Identities=23% Similarity=0.358 Sum_probs=47.4
Q ss_pred HHHHHhh-ccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 78 DLRELFS-HFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 78 ~l~~~f~-~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
++...|+ +||.|..+.+-.+ .|.++|.|...++|++|+..|++..+.|++|...+.-
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444445 8999988866543 6889999999999999999999999999999988864
No 161
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.85 E-value=0.008 Score=41.21 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=48.4
Q ss_pred CHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc--CCeeCCeEEEEEeccC
Q 038175 75 SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ--GTAIGKQTVRLSWGHN 135 (155)
Q Consensus 75 ~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~ 135 (155)
....|+++|..++.+..+...++-+-..|.|.+.+.|..|...|+ +..+.|..+++.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999999998888888889999999999999999999 8999999999999854
No 162
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.0097 Score=46.24 Aligned_cols=60 Identities=23% Similarity=0.481 Sum_probs=48.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC---------CCc---EEEEEecCHHHHHHHHHHh
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---------GKG---CGFVQFANRKDAEVALQKL 118 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~---------~~g---~~~v~f~~~~~a~~a~~~l 118 (155)
...-.++||||+||..++|+.|...|..||.+. +.++. .+| |+|+.|++..+.+.-+..+
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 345678999999999999999999999999765 45552 256 9999999998887766543
No 163
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.49 E-value=0.0027 Score=48.22 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=58.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCC-eeCCeEEEEEeccCC
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT-AIGKQTVRLSWGHNP 136 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~-~~~g~~l~v~~~~~~ 136 (155)
..+|++||...++..++..+|...-....-.+.-..|++|+.+.+...|.+|++.++|+ ++.|..+.+.++-++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 46899999999999999999986521111112223699999999999999999999986 589999999887543
No 164
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.36 E-value=0.0087 Score=45.08 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=58.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC---------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG---------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
....|.|.||...++.+.++.+|...|.|..+.++.. ...|||.|.+...+..|.. |.++.+=|+-|.|.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 3448999999999999999999999999999988762 3679999999999888876 67777666666555
Q ss_pred ec
Q 038175 132 WG 133 (155)
Q Consensus 132 ~~ 133 (155)
.+
T Consensus 85 p~ 86 (479)
T KOG4676|consen 85 PY 86 (479)
T ss_pred ec
Confidence 43
No 165
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.28 E-value=0.0058 Score=43.42 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=44.7
Q ss_pred cccCCCCCCHHHHHhhcccc------eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFSRA------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~------~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|+...+|.+++...|+.| .+..+...+..+|||||+|.+.+.++.++. |++
T Consensus 106 v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~g 164 (231)
T KOG4209|consen 106 VGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDG 164 (231)
T ss_pred EeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCC
Confidence 56888889999999999933 456677777899999999999999999998 777
No 166
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.21 E-value=0.0084 Score=48.40 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=44.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCC---CCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNT---GHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.||++.++|+.|...|+ ++++++-+.. ...+.+|||-|.+..+|++|++.|+|
T Consensus 179 v~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg 241 (877)
T KOG0151|consen 179 VGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG 241 (877)
T ss_pred eecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc
Confidence 569999999999999996 6666664321 23466999999999999999999999
No 167
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.18 E-value=0.011 Score=36.79 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=29.1
Q ss_pred ccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 3 YCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
.+++..++-++|++.|+...-+...........|+|.|.+.+.|+.|+..+..
T Consensus 7 ~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 7 SGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp EE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHh
Confidence 35788899999999999433332221122234799999999999999987644
No 168
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.91 E-value=0.047 Score=39.90 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=50.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEE-EEEecc
Q 038175 65 IFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTV-RLSWGH 134 (155)
Q Consensus 65 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l-~v~~~~ 134 (155)
|.|.+.|..- -.-+..+|.+||.|.+......-.+-+|.|.+..+|++|+.. +|..|+|..+ -|..+.
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 3444666542 235678899999998876665557899999999999999995 9998877643 465543
No 169
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.90 E-value=0.00021 Score=58.08 Aligned_cols=97 Identities=26% Similarity=0.309 Sum_probs=72.6
Q ss_pred eEEEEeCCHHHHHHHHHHhcC------------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE
Q 038175 35 YGFVRFGDENERSRAMIEMNG------------------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL 90 (155)
Q Consensus 35 ~afv~f~~~~~a~~a~~~~~~------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~ 90 (155)
++++.+.....++.|.....+ +.......++|+.|++..+.+.+|...|..+|.+.
T Consensus 616 ~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e 695 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIE 695 (881)
T ss_pred hhhhhhccccchhhcccccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhh
Confidence 788888888888877643322 11113456789999999999999999999999877
Q ss_pred EEEee----C--CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 91 SVKIP----V--GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 91 ~~~~~----~--~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.+++. . -+|+|++.|..++.+.+|+...+++.++...+-|+
T Consensus 696 ~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~ 742 (881)
T KOG0128|consen 696 VVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAIS 742 (881)
T ss_pred hHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhee
Confidence 66543 1 27999999999999999998877766554444443
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.61 E-value=0.015 Score=31.39 Aligned_cols=39 Identities=10% Similarity=0.296 Sum_probs=30.4
Q ss_pred HHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHH
Q 038175 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAM 50 (155)
Q Consensus 12 ~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 50 (155)
+.+...|.+++.+.+........+.+|.|.+..+|++|+
T Consensus 15 ~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 15 EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 445567777777776655556779999999999999985
No 171
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.53 E-value=0.019 Score=42.70 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=46.5
Q ss_pred cccCCCCCCHHHHHhhcccceEE--------------EcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVT--------------IDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG 58 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~--------------~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 58 (155)
|.+||..+++++|.++|..|.++ ++..+...++-|.|.|.+...|+.|+.-+++...
T Consensus 71 v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 71 VWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred eeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 56789999999999999944433 3445667899999999999999999988877443
No 172
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.46 E-value=0.01 Score=45.74 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 59 KSNNATIFVGALDSNV-SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
..+.+.|-+.-.|..+ +..+|...|.+||.|..|.+..+...|.|+|.+..+|-.|.. .++..|.++.|+|.|..+
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 3456666677777764 457899999999999999887767789999999999976665 488999999999999876
No 173
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.88 E-value=0.38 Score=31.55 Aligned_cols=77 Identities=27% Similarity=0.374 Sum_probs=59.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCH-HHHH---HHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSD-KDLR---ELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~-~~l~---~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
....++..+|.|.=+..++.. +|++ ..++.||+|..+..- ++..|.|.|.+..+|=.|+..++. ...|..+.++
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 456788899999877776543 4444 456789999887543 567899999999999999998876 5678888888
Q ss_pred ecc
Q 038175 132 WGH 134 (155)
Q Consensus 132 ~~~ 134 (155)
|-+
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 854
No 174
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.86 E-value=0.025 Score=33.94 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=38.9
Q ss_pred EEEEeCCHHHHHHHHHHhc------C-------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhh
Q 038175 36 GFVRFGDENERSRAMIEMN------G-------------------SDGKSNNATIFVGALDSNVSDKDLRELFS 84 (155)
Q Consensus 36 afv~f~~~~~a~~a~~~~~------~-------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 84 (155)
|+|.|.+..-|++.+..-. + .......++|.+.|||..+.+++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999886421 1 23457889999999999999999997653
No 175
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.83 E-value=0.56 Score=29.43 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=44.6
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhhccC-CeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCeeC
Q 038175 62 NATIFVGALDS-NVSDKDLRELFSHFG-EILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIG 124 (155)
Q Consensus 62 ~~~l~v~~l~~-~~~~~~l~~~f~~~g-~v~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~ 124 (155)
...+.+-..|. .+..++|..+.+.+- .|..+++.++ +-.+++.|.+...|..-...+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444444454 566666766655553 5677777763 346999999999999999999999874
No 176
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.48 E-value=0.083 Score=37.78 Aligned_cols=74 Identities=27% Similarity=0.323 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCCCC--------CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHH
Q 038175 45 ERSRAMIEMNGSDGK--------SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDA 111 (155)
Q Consensus 45 ~a~~a~~~~~~~~~~--------~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a 111 (155)
-|..|..+|.+.... .....|+|.||+..++-+.+...|..||.+...-+.. ..+-++|+|.....|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a 85 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNA 85 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhH
Confidence 466666777772211 1338899999999999999999999999986644332 246789999999999
Q ss_pred HHHHHHh
Q 038175 112 EVALQKL 118 (155)
Q Consensus 112 ~~a~~~l 118 (155)
..|...+
T Consensus 86 ~~a~rr~ 92 (275)
T KOG0115|consen 86 RKAARRC 92 (275)
T ss_pred HHHHHHh
Confidence 9998876
No 177
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.25 E-value=0.23 Score=29.46 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=32.5
Q ss_pred CCCCCHHHHHhhcc---cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhc
Q 038175 6 VSDITNSILQETFS---RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54 (155)
Q Consensus 6 p~~~te~~l~~~f~---~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 54 (155)
|.++...||.++|+ .+.|.+-.. ..|||...+.++|..++..+.
T Consensus 17 PkeWK~~DI~qlFspfG~I~VsWi~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 17 PKEWKTSDIYQLFSPFGQIYVSWIND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -TT--HHHHHHHCCCCCCEEEEEECT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred chHhhhhhHHHHhccCCcEEEEEEcC-----CcEEEEeecHHHHHHHHHHhc
Confidence 99999999999999 444444322 369999999999999988764
No 178
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.22 E-value=0.44 Score=27.50 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHhhccCC-----eEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 72 SNVSDKDLRELFSHFGE-----ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 72 ~~~~~~~l~~~f~~~g~-----v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
..++..+|..++...+. |-.+.+. ..++||+.. .+.|+.++..|++..+.|++++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788888888887654 4456666 678999986 45778899999999999999999864
No 179
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.11 E-value=0.078 Score=36.15 Aligned_cols=76 Identities=11% Similarity=0.201 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEE--eeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCC--
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSH-FGEI---LSVK--IPV------GKGCGFVQFANRKDAEVALQKLQGTAIGK-- 125 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v---~~~~--~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g-- 125 (155)
.....|.|.+||..++++++...++. ++.- .++. ... ...-|+|.|.+.+++..-...++|..+-+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999987766 5543 3443 111 13569999999999999999999987632
Q ss_pred ---eEEEEEeccC
Q 038175 126 ---QTVRLSWGHN 135 (155)
Q Consensus 126 ---~~l~v~~~~~ 135 (155)
....|.++-.
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3456777644
No 180
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.96 E-value=0.03 Score=41.78 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=56.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFG--EILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
-....+||+||--.++++||.+.+..-| .+..+++.. ++|||++...+..+....++.|..+.+.|..-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456789999999999999999888766 334444432 58999999999999999999988888888654443
No 181
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.93 E-value=0.017 Score=47.76 Aligned_cols=77 Identities=27% Similarity=0.446 Sum_probs=65.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
....+++|+++|++..+++.+|+..|..+|.|..|.+.. .-.++|+.|.+...+..|...+.+..+..-.+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 345789999999999999999999999999999987754 246899999999999999988999888766666666
Q ss_pred cc
Q 038175 133 GH 134 (155)
Q Consensus 133 ~~ 134 (155)
..
T Consensus 448 G~ 449 (975)
T KOG0112|consen 448 GQ 449 (975)
T ss_pred cc
Confidence 53
No 182
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.81 E-value=0.3 Score=37.81 Aligned_cols=65 Identities=17% Similarity=0.338 Sum_probs=55.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCeeC
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFG-EILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIG 124 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~ 124 (155)
.....|.|-.+|..++-.||..++..+- .|..+++.++ +-.++|.|.+..+|..-...+||+.|.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 3389999999999999999999998764 5777887763 345899999999999999999999874
No 183
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.79 E-value=0.027 Score=41.63 Aligned_cols=77 Identities=17% Similarity=0.358 Sum_probs=58.8
Q ss_pred CCCcEEEEcCCCCCCCHH-HHH--HHhhccCCeEEEEeeCCC---------cEEEEEecCHHHHHHHHHHhcCCeeCCeE
Q 038175 60 SNNATIFVGALDSNVSDK-DLR--ELFSHFGEILSVKIPVGK---------GCGFVQFANRKDAEVALQKLQGTAIGKQT 127 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~-~l~--~~f~~~g~v~~~~~~~~~---------g~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 127 (155)
....-+|+-+|+..+..+ .|+ ..|.+||.|.++....+. ..++|+|...++|..+|...+|..+.|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 344567777888765443 443 368889999988776521 23799999999999999999999999999
Q ss_pred EEEEeccCC
Q 038175 128 VRLSWGHNP 136 (155)
Q Consensus 128 l~v~~~~~~ 136 (155)
++..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 888887654
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.75 E-value=0.46 Score=29.81 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=43.5
Q ss_pred CCCCCHHHHHhhcc-------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC----CCCCCCCcEEEEcCCCC
Q 038175 6 VSDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----SDGKSNNATIFVGALDS 72 (155)
Q Consensus 6 p~~~te~~l~~~f~-------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~----~~~~~~~~~l~v~~l~~ 72 (155)
|..++-++|..+.. .++++++. ..++-.+++.|.+.++|......+|| ..+......+||..+-.
T Consensus 22 ~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV~~Ve~ 97 (110)
T PF07576_consen 22 PYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFVKSVEF 97 (110)
T ss_pred cccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEEEEEEE
Confidence 44445555654444 34555542 24667899999999999999999999 34445577777765543
No 185
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.68 E-value=0.056 Score=44.70 Aligned_cols=73 Identities=22% Similarity=0.298 Sum_probs=61.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCee--CCeEEEEEeccC
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI--GKQTVRLSWGHN 135 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~~~~ 135 (155)
.+.++.|.+-..+-.-|-.+|..||.|......++-..+.|+|.+.+.|..|...++|+++ -|-+.+|.+++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3444555566666678889999999999998888888999999999999999999999975 577899999875
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.60 E-value=0.35 Score=38.45 Aligned_cols=73 Identities=11% Similarity=0.228 Sum_probs=56.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC--CeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSH--FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG--TAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~--~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~ 132 (155)
....+.+.+..||...-.++++.+|.. +-.+..|.+..+ ..=||+|++..+|+.|.+.|.. +.|.|+.|..+.
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 445667777999999999999999985 567777776654 3469999999999999887743 346777766554
No 187
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.53 E-value=0.032 Score=41.00 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=41.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHH
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMI 51 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 51 (155)
|.|++.++++++|+..|. .+++..+..++..+|+|+++|.....+..++.
T Consensus 190 ~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 190 VGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 568999999999998777 33444455677889999999999999998875
No 188
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=92.95 E-value=0.053 Score=41.45 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=40.3
Q ss_pred cccCCCCCCHHHHHhhcc---cceEEEcCCC--------C--------CCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS---RAKVTIDSNT--------G--------HTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~---~~~~~~~~~~--------~--------~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|+|||.+-.-+.|.++|+ ++..++-... + ..+-+|+|+|...+.|.+|.+.++.
T Consensus 236 aenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 236 AENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred EecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 689999999999999999 3333332211 1 1255899999999999999987755
No 189
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.85 E-value=0.17 Score=37.90 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=48.3
Q ss_pred cccCCCCCCHHHHHhhcc--------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEE
Q 038175 2 GYCQVSDITNSILQETFS--------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATI 65 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l 65 (155)
|-||-+-+|++||.+... +++...++..|+++|||++..-+...+++.|+-|......-.+.+|
T Consensus 85 vGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 85 VGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 568888899999887766 5566667778999999999999999888888766554433333344
No 190
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.46 E-value=0.23 Score=39.50 Aligned_cols=27 Identities=37% Similarity=0.694 Sum_probs=25.2
Q ss_pred CCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 29 TGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 29 ~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
.+.++||.|++|.+..+|+.|+++++|
T Consensus 101 ~ggtkG~lf~E~~~~~~A~~aVK~l~G 127 (698)
T KOG2314|consen 101 EGGTKGYLFVEYASMRDAKKAVKSLNG 127 (698)
T ss_pred cCCeeeEEEEEecChhhHHHHHHhccc
Confidence 356999999999999999999999999
No 191
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.90 E-value=0.14 Score=41.18 Aligned_cols=74 Identities=22% Similarity=0.197 Sum_probs=62.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
....+...++||+|+...+..+.++..+..+|.|....... ++|..|.....+..|+..++-..++|..+.+.-
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34567888999999999999999999999999887765443 899999999999999998888888887765543
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.23 E-value=0.27 Score=33.57 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=35.4
Q ss_pred cccCCCCCCHHHHHhhcc----cc---eEEE----cCCC-CCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS----RA---KVTI----DSNT-GHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~----~~---~~~~----~~~~-~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.+||+..||+++.+.+. .. .... .... ......|+|.|.+.+++......++|
T Consensus 12 IR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 12 IRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp EEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred EeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 678999999999999444 11 1111 1111 12344699999999999999999988
No 193
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.70 E-value=1.9 Score=24.36 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=43.7
Q ss_pred CCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 73 NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 73 ~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
.++-++++..|..|+- ..| ..++..-+|.|.+..+|+++....+|..+.+..+..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4778899999999963 333 344666799999999999999999999887776643
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.06 E-value=0.43 Score=37.99 Aligned_cols=52 Identities=10% Similarity=0.232 Sum_probs=39.6
Q ss_pred ccCCCCCCHHHHHhhcc--cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 3 YCQVSDITNSILQETFS--RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
.-||..+-+++++.+|+ .|-.+.+.....+.+| ||.|++..||+.|.+.|..
T Consensus 181 REIpettp~e~Vk~lf~~encPk~iscefa~N~nW-yITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 181 REIPETTPIEVVKALFKGENCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLRE 234 (684)
T ss_pred eecCCCChHHHHHHHhccCCCCCceeeeeeecCce-EEEeecchhHHHHHHHHHH
Confidence 45799999999999999 4555555544555555 9999999999999765433
No 195
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=88.52 E-value=0.68 Score=28.51 Aligned_cols=47 Identities=9% Similarity=0.090 Sum_probs=30.7
Q ss_pred cCCCCCCHHHHHhhcccceEEEcCC-------------CCCCcceEEEEeCCHHHHHHHHH
Q 038175 4 CQVSDITNSILQETFSRAKVTIDSN-------------TGHTKGYGFVRFGDENERSRAMI 51 (155)
Q Consensus 4 nlp~~~te~~l~~~f~~~~~~~~~~-------------~~~~~g~afv~f~~~~~a~~a~~ 51 (155)
-.|+. ....+.+.|++++.+.+.. ......+-.|.|.++.+|.+|+.
T Consensus 13 Gfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~ 72 (100)
T PF05172_consen 13 GFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ 72 (100)
T ss_dssp ---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT
T ss_pred ccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH
Confidence 33555 4556777788666655442 22445699999999999999985
No 196
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=87.91 E-value=0.75 Score=31.36 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=54.5
Q ss_pred cEEEEcCCCCCCCH-----HHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCe-EEEEEeccCC
Q 038175 63 ATIFVGALDSNVSD-----KDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQ-TVRLSWGHNP 136 (155)
Q Consensus 63 ~~l~v~~l~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~~~ 136 (155)
.++.+..++..+.. .....+|-++......++.++.+...|.|.+++.|..|..++++..|.|. .++.-++...
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 44556666665322 23445566666666666777788899999999999999999999999888 8888887653
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.43 E-value=3 Score=32.52 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=47.9
Q ss_pred ccCCCCCCHHHHHhhcc-------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC----CCCCCCCcEEEEc
Q 038175 3 YCQVSDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----SDGKSNNATIFVG 68 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~-------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~----~~~~~~~~~l~v~ 68 (155)
+-+|..+|--||..|.. .++++++. ..++-..+|.|.+..+|.....++|| +.+.....-|||.
T Consensus 80 laVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V~ 154 (493)
T KOG0804|consen 80 LAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYVD 154 (493)
T ss_pred EeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEEE
Confidence 34589999999999887 67777753 24556799999999999999999999 2333344445554
No 198
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=86.14 E-value=2.8 Score=30.85 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=41.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeeCCCcEEEEEecCHH
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFG-EILSVKIPVGKGCGFVQFANRK 109 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~g~~~v~f~~~~ 109 (155)
.-...++++|||.++.-.||+..+.+.+ ....+.+.-..+-||+.|-+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 3456799999999999999999999877 4577777777899999997653
No 199
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=84.63 E-value=3.9 Score=22.82 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=28.8
Q ss_pred CCCCHHHHHhhcccc---------eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 038175 7 SDITNSILQETFSRA---------KVTIDSNTGHTKGYGFVRFGDENERSRAMIEM 53 (155)
Q Consensus 7 ~~~te~~l~~~f~~~---------~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 53 (155)
.+.+.+++..+|.+. ..+.+ ..|=|.|.+.+.|.+|+..|
T Consensus 14 d~lsT~dI~~y~~~y~~~~~~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 14 DELSTDDIKAYFSEYFDEEGPFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred CCCCHHHHHHHHHHhcccCCCceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 357788999998832 22222 14789999999999998754
No 200
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.02 E-value=9.3 Score=30.95 Aligned_cols=75 Identities=27% Similarity=0.319 Sum_probs=59.4
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhcc----CCeEEEEeeCC-----------------------------------
Q 038175 58 GKSNNATIFVGALDS-NVSDKDLRELFSHF----GEILSVKIPVG----------------------------------- 97 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~----g~v~~~~~~~~----------------------------------- 97 (155)
.....++|-|.|+.= .+...+|.-+|+.| |.|..|.|+++
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 356788899999985 58889999998876 57888887641
Q ss_pred ------------------CcEEEEEecCHHHHHHHHHHhcCCeeCCe--EEEEEe
Q 038175 98 ------------------KGCGFVQFANRKDAEVALQKLQGTAIGKQ--TVRLSW 132 (155)
Q Consensus 98 ------------------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~--~l~v~~ 132 (155)
.-||.|+|.+.+.|......++|..+... .+-++|
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 13699999999999999999999998754 444555
No 201
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=83.40 E-value=3.3 Score=29.90 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=40.7
Q ss_pred cccCCCCCCHHHHHhhcc-----cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 038175 2 GYCQVSDITNSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEM 53 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~-----~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 53 (155)
|.||+.-++-+.|..-|+ +..++..-..+...+-++|.|...-.|.+|...+
T Consensus 36 V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 36 VVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred EEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 789999999999999998 2233332234667788999999999999998876
No 202
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=80.24 E-value=6.2 Score=29.14 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=58.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCC-------------cEEEEEecCHHHHHHHH----HHhc-
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK-------------GCGFVQFANRKDAEVAL----QKLQ- 119 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-------------g~~~v~f~~~~~a~~a~----~~l~- 119 (155)
.....+.|...|+...++-..+...|-+||+|+.|.+..+. ..+.+.|-+.+.+..-. ..|.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999999987643 56888998888765542 2222
Q ss_pred -CCeeCCeEEEEEecc
Q 038175 120 -GTAIGKQTVRLSWGH 134 (155)
Q Consensus 120 -~~~~~g~~l~v~~~~ 134 (155)
...+....|.++|..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 234778888888765
No 203
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=77.86 E-value=1.2 Score=32.05 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=22.8
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 31 HTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 31 ~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
...|=++|.|...++|++|+..|++.
T Consensus 108 hl~GNVYV~f~~Ee~ae~a~~~lnnR 133 (260)
T KOG2202|consen 108 HLVGNVYVKFRSEEDAEAALEDLNNR 133 (260)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHcCc
Confidence 34677999999999999999999983
No 204
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=76.17 E-value=1.3 Score=35.61 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=44.9
Q ss_pred cccCCCCCCHHHHHhhcc-cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC-CCCCCCcEEE
Q 038175 2 GYCQVSDITNSILQETFS-RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS-DGKSNNATIF 66 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~~~~~~~l~ 66 (155)
+.||-.-+|..+|+.++. .++++.+.--..-+..|||.|.+.++|......|||. =+....+.|.
T Consensus 449 I~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 449 IDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred eecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 356777889999999998 4444433211133457999999999999999999993 2333444444
No 205
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.87 E-value=4.7 Score=31.10 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=49.2
Q ss_pred cccCCCCCCHHHHHhhcc-----cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCH
Q 038175 2 GYCQVSDITNSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSD 76 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~-----~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~~~~~ 76 (155)
||+.|.....+||...|. ++.|.|.-.+ .||..|++...|..|+. ....-|-+.-|......
T Consensus 396 Iydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt--------~kh~~lKiRpLaqatk~ 462 (528)
T KOG4483|consen 396 IYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALT--------LKHDWLKIRPLAQATKV 462 (528)
T ss_pred eccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhh--------ccCceEEeeehhhchhH
Confidence 688999999999999888 6677665332 79999999999999983 34455666666666555
Q ss_pred HHHHH
Q 038175 77 KDLRE 81 (155)
Q Consensus 77 ~~l~~ 81 (155)
..++.
T Consensus 463 sklkA 467 (528)
T KOG4483|consen 463 SKLKA 467 (528)
T ss_pred HHHHh
Confidence 54443
No 206
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=73.35 E-value=13 Score=27.38 Aligned_cols=40 Identities=33% Similarity=0.515 Sum_probs=31.3
Q ss_pred CCCCCCCcEEEEcCCCCC------------CCHHHHHHHhhccCCeEEEEee
Q 038175 56 SDGKSNNATIFVGALDSN------------VSDKDLRELFSHFGEILSVKIP 95 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~------------~~~~~l~~~f~~~g~v~~~~~~ 95 (155)
..+.....||++.++|-. .+++.|+..|..||.|..+.++
T Consensus 143 mkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 143 MKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred cCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 345566778888888743 4577899999999999998876
No 207
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=71.87 E-value=37 Score=28.18 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHhhccCCeEE-----EEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 72 SNVSDKDLRELFSHFGEILS-----VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 72 ~~~~~~~l~~~f~~~g~v~~-----~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
..++..+|-.++..-+.|.. |.+. ..+.||+.. ...|...+..|.+..+.|+.|.|+.++
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcC-hhhHHHHHHHhccccccCCceEEEECC
Confidence 35788888888876655433 4444 578999986 556788899999999999999999875
No 208
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=68.63 E-value=1.7 Score=31.30 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=40.6
Q ss_pred cccCCCCCCHHHHHhhcccceEEE----cCC--C--------CCCcc----eEEEEeCCHHHHHHHHHHhcCCCCCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTI----DSN--T--------GHTKG----YGFVRFGDENERSRAMIEMNGSDGKS 60 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~----~~~--~--------~~~~g----~afv~f~~~~~a~~a~~~~~~~~~~~ 60 (155)
.+|||+.+.-..|+++++..+.+. .+. + +.+.. -|-|+|.+...|.++...||+.+...
T Consensus 79 lS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 79 LSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred eccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 368999999999999999222221 111 1 11111 36799999999999999999955433
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.94 E-value=12 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=31.7
Q ss_pred HHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHH
Q 038175 14 LQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMI 51 (155)
Q Consensus 14 l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 51 (155)
|.+.|..|+.+.+.....+-.|-.|.|.+.-+|++|+.
T Consensus 213 vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs 250 (350)
T KOG4285|consen 213 VLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS 250 (350)
T ss_pred HHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh
Confidence 45667788888777777777799999999999999985
No 210
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.70 E-value=25 Score=27.32 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=45.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeeCCCcEEEEEecCHHHHHHHHHH
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGE-ILSVKIPVGKGCGFVQFANRKDAEVALQK 117 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 117 (155)
-...|-|.++|.....+||...|..|+. =..|.|.. ..++|-.|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-cceeEEeecchHHHHHHhhc
Confidence 4567788999999888899999999864 35566665 47899999999999998874
No 211
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=59.74 E-value=35 Score=20.29 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=37.5
Q ss_pred EcCCCCCCCHHHHHHHhhc-cC-CeEEEEeeC---CCcEEEEEecCHHHHHHHHHH
Q 038175 67 VGALDSNVSDKDLRELFSH-FG-EILSVKIPV---GKGCGFVQFANRKDAEVALQK 117 (155)
Q Consensus 67 v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~---~~g~~~v~f~~~~~a~~a~~~ 117 (155)
+--++...+..+|++.++. || .|..+.... +.--|+|.+..-..|......
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 3347888999999999997 56 566665432 335699999998888776554
No 212
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=59.23 E-value=13 Score=28.11 Aligned_cols=19 Identities=16% Similarity=0.697 Sum_probs=17.9
Q ss_pred EEEeCCHHHHHHHHHHhcC
Q 038175 37 FVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 37 fv~f~~~~~a~~a~~~~~~ 55 (155)
+|.|.+.++|.+++.+.+|
T Consensus 169 YITy~~kedAarcIa~vDg 187 (480)
T COG5175 169 YITYSTKEDAARCIAEVDG 187 (480)
T ss_pred EEEecchHHHHHHHHHhcc
Confidence 9999999999999998777
No 213
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=57.36 E-value=22 Score=26.46 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=28.4
Q ss_pred EEEEeCCHHHHHHHHHHhcCC-------CCCCCCcEEEEcCCCCCCCHHHHHHH
Q 038175 36 GFVRFGDENERSRAMIEMNGS-------DGKSNNATIFVGALDSNVSDKDLREL 82 (155)
Q Consensus 36 afv~f~~~~~a~~a~~~~~~~-------~~~~~~~~l~v~~l~~~~~~~~l~~~ 82 (155)
|||.|.+..+|..|.+.+... ...++...+.=.|+.....+..++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~ 54 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRI 54 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHH
Confidence 799999999999998865442 22333444444455444444444443
No 214
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=56.95 E-value=11 Score=27.98 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred eEEEEeCCHHHHHHHHHHhcCC
Q 038175 35 YGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 35 ~afv~f~~~~~a~~a~~~~~~~ 56 (155)
.-||+|...++|.+|+-.|+|.
T Consensus 331 RiFveF~r~e~aiKA~VdlnGR 352 (378)
T KOG1996|consen 331 RIFVEFERVESAIKAVVDLNGR 352 (378)
T ss_pred eeeeeeccHHHHHHHHHhcCCc
Confidence 4799999999999999999883
No 215
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=55.08 E-value=36 Score=18.99 Aligned_cols=19 Identities=32% Similarity=0.698 Sum_probs=15.0
Q ss_pred HHHHHHhhccCCeEEEEee
Q 038175 77 KDLRELFSHFGEILSVKIP 95 (155)
Q Consensus 77 ~~l~~~f~~~g~v~~~~~~ 95 (155)
.+|+++|+..|.|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999988665443
No 216
>PHA01632 hypothetical protein
Probab=54.02 E-value=16 Score=19.83 Aligned_cols=20 Identities=10% Similarity=0.454 Sum_probs=16.8
Q ss_pred EEcCCCCCCCHHHHHHHhhc
Q 038175 66 FVGALDSNVSDKDLRELFSH 85 (155)
Q Consensus 66 ~v~~l~~~~~~~~l~~~f~~ 85 (155)
.|..+|...++++|+..+.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 35789999999999988765
No 217
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=51.84 E-value=47 Score=19.37 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=37.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEeeC---CCcEEEEEecCHHHHHHHHHH
Q 038175 65 IFVGALDSNVSDKDLRELFSH-FG-EILSVKIPV---GKGCGFVQFANRKDAEVALQK 117 (155)
Q Consensus 65 l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~---~~g~~~v~f~~~~~a~~a~~~ 117 (155)
-|+-.++...+..+|++.++. || .|..+.... +.--|+|.+..-..|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 344457889999999999987 55 566665432 334599999888887766543
No 218
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=49.96 E-value=57 Score=19.76 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHhhccCC-eEEEEeeCC--CcEEEEEecCHHHHHHHHHHhc
Q 038175 70 LDSNVSDKDLRELFSHFGE-ILSVKIPVG--KGCGFVQFANRKDAEVALQKLQ 119 (155)
Q Consensus 70 l~~~~~~~~l~~~f~~~g~-v~~~~~~~~--~g~~~v~f~~~~~a~~a~~~l~ 119 (155)
+-..++...|...|...|. -....+.++ +.+|.|+|.+.+.+..|...|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 5566777777777766663 222233333 5789999999999998877653
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.60 E-value=28 Score=28.39 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=40.9
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCHH-HHHHHhh
Q 038175 35 YGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDK-DLRELFS 84 (155)
Q Consensus 35 ~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~~~~~~-~l~~~f~ 84 (155)
||.|+|.+.+.|......+.|-.-......+=+.-||..++.+ +.++.+.
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm~Fddd~rd~cs 320 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDMTFDDDPRDECS 320 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCCccccccHhHhh
Confidence 8999999999999999999997777778888888899887643 3455544
No 220
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=48.65 E-value=1.2e+02 Score=25.07 Aligned_cols=41 Identities=5% Similarity=0.156 Sum_probs=34.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV 96 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 96 (155)
.++..+...+|+.+++.++.++.=.++....-.++.+.+.+
T Consensus 295 EPEGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~r 335 (621)
T COG0445 295 EPEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILR 335 (621)
T ss_pred cCCCCCCceEecCcccccCCHHHHHHHHHhCcccccceeec
Confidence 77788899999999999999887777777777777777765
No 221
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=46.64 E-value=56 Score=19.17 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=23.5
Q ss_pred CeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCCe
Q 038175 88 EILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTA 122 (155)
Q Consensus 88 ~v~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~ 122 (155)
.|..+..+.+ +||.|||=.+..+...|+..+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 3444444443 8999999999999999988766543
No 222
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.58 E-value=37 Score=25.25 Aligned_cols=39 Identities=33% Similarity=0.542 Sum_probs=28.2
Q ss_pred EEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCCC
Q 038175 101 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQW 141 (155)
Q Consensus 101 ~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 141 (155)
|||+|++..+|+.+.+.+.... ...++++.+-.+..--|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W 39 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIW 39 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccc
Confidence 6999999999999998655443 35557777766555444
No 223
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=45.50 E-value=48 Score=17.68 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=34.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCH
Q 038175 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANR 108 (155)
Q Consensus 64 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~ 108 (155)
++.|.++.=.-....+++.+...-.|..+.+....+.+-|.|...
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~ 45 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPD 45 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecC
Confidence 345555555555677888888888898888888788888888754
No 224
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=42.52 E-value=38 Score=22.50 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=20.8
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 31 HTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 31 ~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
..+-.|.|.|.+..+|=.|+..++.
T Consensus 123 cGrqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 123 CGRQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred cCCceEEEEehhhHHHHHHHHhhcC
Confidence 3445799999999999999988765
No 225
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=39.79 E-value=1e+02 Score=19.97 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHhhccCCeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 76 DKDLRELFSHFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 76 ~~~l~~~f~~~g~v~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
|.+|+..| -|..+.++.++.. ..+-+..+.+... ..++..+.+..+.++++.|..-.
T Consensus 2 e~~lkAa~-l~nf~~f~~WP~~~~~~~~~icv~g~~~~-~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAY-LYNFAKFIEWPDSAPSSPFRICVLGDDPF-AEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHH-HHHhHhhccCCCCCCCCCeEEEEECChHH-HHHHHHhhhcccCCCcEEEEECC
Confidence 34455443 2333445556543 3455555655554 34677888889999999988654
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=39.07 E-value=43 Score=21.16 Aligned_cols=44 Identities=14% Similarity=0.269 Sum_probs=22.1
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhhccCCeEEEEeeCC---CcEEEEEecC
Q 038175 64 TIFVGALDSN---------VSDKDLRELFSHFGEILSVKIPVG---KGCGFVQFAN 107 (155)
Q Consensus 64 ~l~v~~l~~~---------~~~~~l~~~f~~~g~v~~~~~~~~---~g~~~v~f~~ 107 (155)
++.|-|+|.. ++-..|++.|..|..++...+... .+++.|.|..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNK 65 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--S
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECC
Confidence 4455666543 345789999999987654444332 5789999965
No 227
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=37.13 E-value=13 Score=24.17 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=46.2
Q ss_pred CcceEEEEeCCHHHHHHHHHH----hcC---------CCCCC-------CCcEEEEcCCCCC-CCHHHHHHHhhccCCeE
Q 038175 32 TKGYGFVRFGDENERSRAMIE----MNG---------SDGKS-------NNATIFVGALDSN-VSDKDLRELFSHFGEIL 90 (155)
Q Consensus 32 ~~g~afv~f~~~~~a~~a~~~----~~~---------~~~~~-------~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~ 90 (155)
..++..+.|.+.+++.+++.. +++ +...+ ..-=|.+.|||.. .+++.++.+.+..|.+.
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 347899999999999988763 122 11111 1222556899986 88889999999999999
Q ss_pred EEEeeC
Q 038175 91 SVKIPV 96 (155)
Q Consensus 91 ~~~~~~ 96 (155)
.+....
T Consensus 134 ~vD~~t 139 (153)
T PF14111_consen 134 EVDENT 139 (153)
T ss_pred EEEcCC
Confidence 887653
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=34.44 E-value=45 Score=24.78 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=30.7
Q ss_pred cccCCCCCCHHHHHhhcc--cceEEEcCCCCCCcceEEEEeCCHH
Q 038175 2 GYCQVSDITNSILQETFS--RAKVTIDSNTGHTKGYGFVRFGDEN 44 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~--~~~~~~~~~~~~~~g~afv~f~~~~ 44 (155)
|.|||.++--.||+.... +|..+.- ......|-||+.|.+..
T Consensus 335 ~~nl~rd~rv~dlk~~lr~~~~~pm~i-swkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 335 LTNLSRDIRVKDLKSELRKRECTPMSI-SWKGHFGKCFLHFGNRK 378 (396)
T ss_pred eccCccccchHHHHHHHHhcCCCceeE-eeecCCcceeEecCCcc
Confidence 579999999999998877 5544332 23456678999997654
No 229
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=33.71 E-value=9.5 Score=30.76 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
..++|++.+++..++-.+|..++..+-.+.++.+... ....++.|+--.....|+..|++..+....+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Confidence 4578899999999999999999999877776655432 35678888777777778888888877665544
No 230
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=32.59 E-value=43 Score=24.13 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=33.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKI 94 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~ 94 (155)
........+||+-|+|...+++-|..+.++.|.+..+.+
T Consensus 34 ~s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 34 HSNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 566788999999999999999999999999986655444
No 231
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=31.05 E-value=1.3e+02 Score=19.21 Aligned_cols=41 Identities=10% Similarity=0.386 Sum_probs=24.1
Q ss_pred CCCCHHHHHhhcc-------cceEEE----cCCCCCCcceEEEEeCCHHHHHH
Q 038175 7 SDITNSILQETFS-------RAKVTI----DSNTGHTKGYGFVRFGDENERSR 48 (155)
Q Consensus 7 ~~~te~~l~~~f~-------~~~~~~----~~~~~~~~g~afv~f~~~~~a~~ 48 (155)
..++++||++-.. +..++- .-..|.+.|||.| |.+.+.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4677788887766 222221 2234567778876 666666654
No 232
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=30.72 E-value=95 Score=20.59 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=23.4
Q ss_pred cCCCCCCHHHHHhhcc---cceEEEcC--CCCCCcceEEEEeCCHHHHHHH
Q 038175 4 CQVSDITNSILQETFS---RAKVTIDS--NTGHTKGYGFVRFGDENERSRA 49 (155)
Q Consensus 4 nlp~~~te~~l~~~f~---~~~~~~~~--~~~~~~g~afv~f~~~~~a~~a 49 (155)
..+...+..+|.+.++ ++.+..-. ......-=|||.+....+|...
T Consensus 88 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 88 IVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDV 138 (145)
T ss_pred EEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 3466777777776555 33322211 1111112478888766665543
No 233
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=29.13 E-value=60 Score=15.78 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.3
Q ss_pred CCCHHHHHHHhhccCCe
Q 038175 73 NVSDKDLRELFSHFGEI 89 (155)
Q Consensus 73 ~~~~~~l~~~f~~~g~v 89 (155)
.++.++|+..+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57889999999999854
No 234
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.72 E-value=30 Score=17.00 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=9.7
Q ss_pred CCCCHHHHHhhcccc
Q 038175 7 SDITNSILQETFSRA 21 (155)
Q Consensus 7 ~~~te~~l~~~f~~~ 21 (155)
.++++++|++.|..+
T Consensus 19 ~Dtd~~~Lk~vF~~i 33 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRI 33 (36)
T ss_dssp S---HHHHHHHHHCS
T ss_pred ccCCHHHHHHHHHHh
Confidence 578899999999743
No 235
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=28.25 E-value=1.8e+02 Score=19.19 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=24.4
Q ss_pred eEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCC
Q 038175 89 ILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGT 121 (155)
Q Consensus 89 v~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~ 121 (155)
+..+.++.. +||.||+....+.+..++..+.+.
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 445555443 799999999888888888777654
No 236
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=28.23 E-value=24 Score=19.98 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=16.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHH
Q 038175 59 KSNNATIFVGALDSNVSDKDL 79 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l 79 (155)
....++++||++|..+-.+.=
T Consensus 24 s~tSr~vflG~IP~~W~~~~~ 44 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDHR 44 (67)
T ss_pred HHcCceEEECCCChHHHHcCc
Confidence 456899999999998776543
No 237
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=27.39 E-value=28 Score=26.43 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=36.3
Q ss_pred HHHHHHHhhccCCeEEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCC
Q 038175 76 DKDLRELFSHFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGT 121 (155)
Q Consensus 76 ~~~l~~~f~~~g~v~~~~~~~--~~g~~~v~f~~~~~a~~a~~~l~~~ 121 (155)
...+-+.+++.|.|..-.+.+ +.|.+|+..-..++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 456777777888776655544 5789999999999999999988865
No 238
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=26.45 E-value=55 Score=16.83 Aligned_cols=19 Identities=5% Similarity=0.167 Sum_probs=15.9
Q ss_pred cccCCCCCCHHHHHhhccc
Q 038175 2 GYCQVSDITNSILQETFSR 20 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~ 20 (155)
|..|+..++.++|+..|..
T Consensus 5 vLgl~~~~~~~~ik~~y~~ 23 (55)
T cd06257 5 ILGVPPDASDEEIKKAYRK 23 (55)
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 5678899999999988883
No 239
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=25.35 E-value=1.2e+02 Score=23.91 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=39.0
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCHH-HHHHHhh
Q 038175 35 YGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDK-DLRELFS 84 (155)
Q Consensus 35 ~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~~~~~~-~l~~~f~ 84 (155)
||.|++.+.+.+......+.|..-......+-+.-+|..++.+ +.++.+.
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~~tfddd~re~ct 310 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDSLTFDDDSREVCT 310 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeecCCCcccccchHhhhh
Confidence 8999999999999999999997766667777777788886653 4455544
No 240
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.05 E-value=85 Score=22.16 Aligned_cols=27 Identities=4% Similarity=0.206 Sum_probs=22.2
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSN 28 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~ 28 (155)
|.-|.++++.++|+..|....++..+.
T Consensus 58 VLqIdpev~~edikkryRklSilVHPD 84 (250)
T KOG1150|consen 58 VLQIDPEVTDEDIKKRYRKLSILVHPD 84 (250)
T ss_pred HHhcCCCCCHHHHHHHHHhhheeecCC
Confidence 455789999999999999777777764
No 241
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.94 E-value=8.9 Score=30.07 Aligned_cols=72 Identities=7% Similarity=-0.104 Sum_probs=50.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 64 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
..++..+|...+++++.-+|+-||.|.-+.+.+ ..-.+|+.-.+ ..++.++..+.-+.+.+..+++..+...
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 345667888899999999999999988776654 13456666653 3345566666666677777887777653
No 242
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=24.68 E-value=1.2e+02 Score=23.49 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeeC--------CCcEEEEEecCHHHHHHHHHHhcCCee
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFG-EILSVKIPV--------GKGCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~--------~~g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
....+.|..||..+++.++.....++- .+....+.+ -.+.++|.|...++...-...++|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 345678899999999998888777653 222222221 136689999999997777777788764
No 243
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=23.97 E-value=1.5e+02 Score=16.66 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=33.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCH
Q 038175 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANR 108 (155)
Q Consensus 64 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~ 108 (155)
++.|.+..=.--...+...+..-..|..+.+....+.+.|.|++.
T Consensus 5 ~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~ 49 (71)
T COG2608 5 TLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSN 49 (71)
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCC
Confidence 445544444444567888888888899999888888899999883
No 244
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=23.10 E-value=76 Score=17.71 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=10.7
Q ss_pred CHHHHHHHhhccCCeEEE
Q 038175 75 SDKDLRELFSHFGEILSV 92 (155)
Q Consensus 75 ~~~~l~~~f~~~g~v~~~ 92 (155)
+-.|+++++.+||.+..+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 346889999999976653
No 245
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=22.62 E-value=1.6e+02 Score=18.28 Aligned_cols=43 Identities=9% Similarity=0.199 Sum_probs=29.6
Q ss_pred ccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 85 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 85 ~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
+-|.|..+...-...|+|+.|++-.. -...+.|..++|.+...
T Consensus 28 ~NGtv~qI~~Y~~pNYvf~~FEnG~t--------vsv~~~gs~~kI~~~Dd 70 (121)
T PF06919_consen 28 KNGTVAQIEQYMTPNYVFMRFENGIT--------VSVTYNGSIFKIGLDDD 70 (121)
T ss_pred CCCcEEEEeeecCCCEEEEEecCCCE--------EEEEecCcEEEEEecCc
Confidence 34788888777678999999974221 01245788888887654
No 246
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.46 E-value=1.6e+02 Score=16.54 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=19.4
Q ss_pred cEEEEEecCHHHHHHHHHHhcCCee
Q 038175 99 GCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 99 g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
...+|.|.+...|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4678999999999988777765443
No 247
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=22.05 E-value=72 Score=17.14 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=16.6
Q ss_pred cccCCCCCCHHHHHhhcccc
Q 038175 2 GYCQVSDITNSILQETFSRA 21 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~ 21 (155)
|..|+.+++.++|+..|...
T Consensus 5 iLgl~~~~~~~eik~~y~~l 24 (64)
T PF00226_consen 5 ILGLPPDASDEEIKKAYRRL 24 (64)
T ss_dssp HCTSTTTSSHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHhh
Confidence 56789999999999998843
No 248
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=21.65 E-value=76 Score=16.66 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=15.5
Q ss_pred cccCCCCCCHHHHHhhcc
Q 038175 2 GYCQVSDITNSILQETFS 19 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~ 19 (155)
|..|+.+++.++|+.-|.
T Consensus 6 vLgl~~~~~~~~ik~ay~ 23 (60)
T smart00271 6 ILGVPRDASLDEIKKAYR 23 (60)
T ss_pred HcCCCCCCCHHHHHHHHH
Confidence 567888999999998887
No 249
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.46 E-value=81 Score=20.99 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHhcC-----CCCCCCCcEEEEcCC
Q 038175 41 GDENERSRAMIEMNG-----SDGKSNNATIFVGAL 70 (155)
Q Consensus 41 ~~~~~a~~a~~~~~~-----~~~~~~~~~l~v~~l 70 (155)
-+.+.|+++...+.. +.....++.|++-.|
T Consensus 10 n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L 44 (149)
T cd07268 10 NENQTAERWKEGLLQCGELLSENEINGRPIALIKL 44 (149)
T ss_pred CCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEc
Confidence 345555555544432 455666666666443
No 250
>PF14893 PNMA: PNMA
Probab=21.38 E-value=79 Score=24.06 Aligned_cols=27 Identities=7% Similarity=0.244 Sum_probs=21.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhc
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSH 85 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~ 85 (155)
....+.|.|.+||.++++.+|++.+..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHH
Confidence 344567789999999999998887654
No 251
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=20.77 E-value=81 Score=27.25 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=37.7
Q ss_pred ccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 3 YCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
.|.+-..+-..|..++.+..-+...-+-..-..|.|+|...+.|..|...++|
T Consensus 304 ~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~g 356 (1007)
T KOG4574|consen 304 ENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQG 356 (1007)
T ss_pred hcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcC
Confidence 35566677777888887444333332223345799999999999999999998
No 252
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.20 E-value=1.8e+02 Score=21.33 Aligned_cols=28 Identities=25% Similarity=0.106 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCe
Q 038175 62 NATIFVGALDSNVSDKDLRELFSHFGEI 89 (155)
Q Consensus 62 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v 89 (155)
.....|+|||+.++-.-+.+++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 4566699999999999998888765443
No 253
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=20.14 E-value=1.4e+02 Score=25.73 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=30.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCHHHHH
Q 038175 33 KGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLR 80 (155)
Q Consensus 33 ~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 80 (155)
-+.|||+|++..+|+.|-...-.+.. ....++.++--|.++.++.+.
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr~-~~~~~v~iapaPnDi~W~Nl~ 403 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSRV-LGKLKVEIAPAPNDIIWDNLR 403 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhhh-hcceeeeecCCccccccccch
Confidence 35899999999999998765322111 111246677777777665443
Done!