Query 038175
Match_columns 155
No_of_seqs 124 out of 1742
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 14:06:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.6E-31 5.6E-36 186.0 13.6 135 2-136 20-181 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 4.5E-30 1.5E-34 171.5 16.2 132 2-134 5-165 (166)
3 2qfj_A FBP-interacting repress 100.0 2.6E-30 8.8E-35 179.7 14.2 139 2-140 33-209 (216)
4 1b7f_A Protein (SXL-lethal pro 100.0 6.3E-30 2.2E-34 171.2 15.0 132 2-133 8-168 (168)
5 3nmr_A Cugbp ELAV-like family 100.0 6E-30 2.1E-34 172.3 14.9 133 2-134 8-175 (175)
6 1l3k_A Heterogeneous nuclear r 100.0 1E-29 3.5E-34 174.2 15.7 137 2-140 18-187 (196)
7 1fxl_A Paraneoplastic encephal 100.0 1.2E-29 4E-34 169.6 15.3 132 2-133 7-167 (167)
8 2g4b_A Splicing factor U2AF 65 100.0 8.8E-30 3E-34 171.2 12.4 131 2-133 9-171 (172)
9 2yh0_A Splicing factor U2AF 65 100.0 2.5E-29 8.4E-34 172.5 13.1 136 2-138 9-196 (198)
10 2cjk_A Nuclear polyadenylated 100.0 3.9E-30 1.3E-34 172.2 8.1 134 2-136 8-166 (167)
11 1fje_B Nucleolin RBD12, protei 100.0 5.7E-29 1.9E-33 167.9 11.1 133 2-136 18-174 (175)
12 3smz_A Protein raver-1, ribonu 100.0 3.2E-28 1.1E-32 175.8 15.4 137 2-138 100-266 (284)
13 3pgw_A U1-A; protein-RNA compl 100.0 5.5E-27 1.9E-31 169.1 17.8 133 2-134 14-281 (282)
14 2adc_A Polypyrimidine tract-bi 100.0 3.2E-27 1.1E-31 166.0 15.6 135 2-136 39-228 (229)
15 3smz_A Protein raver-1, ribonu 99.9 8.4E-27 2.9E-31 168.3 15.3 135 2-137 27-176 (284)
16 1qm9_A Polypyrimidine tract-bi 99.9 1.4E-26 4.8E-31 159.1 14.2 135 2-136 8-197 (198)
17 3sde_A Paraspeckle component 1 99.9 1.4E-26 4.8E-31 165.6 11.7 135 2-136 27-179 (261)
18 2ghp_A U4/U6 snRNA-associated 99.9 4.6E-26 1.6E-30 165.0 14.0 133 2-136 122-291 (292)
19 3tyt_A Heterogeneous nuclear r 99.9 7.7E-26 2.6E-30 156.5 13.6 132 2-133 9-204 (205)
20 2ghp_A U4/U6 snRNA-associated 99.9 7.8E-26 2.7E-30 163.8 14.2 134 2-138 46-199 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 2.1E-24 7.2E-29 143.5 14.9 118 21-140 3-154 (158)
22 2i2y_A Fusion protein consists 99.9 2.7E-22 9.2E-27 132.3 12.0 107 31-137 11-149 (150)
23 3r27_A HnRNP L, heterogeneous 99.9 8.8E-21 3E-25 116.1 11.8 83 55-137 14-98 (100)
24 2dgu_A Heterogeneous nuclear r 99.9 3.6E-20 1.2E-24 114.7 13.4 83 57-141 6-88 (103)
25 2lea_A Serine/arginine-rich sp 99.9 1.4E-21 4.7E-26 126.8 7.2 107 34-140 5-131 (135)
26 4fxv_A ELAV-like protein 1; RN 99.9 9.8E-21 3.4E-25 116.5 10.6 77 59-135 16-98 (99)
27 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-20 4E-25 116.6 10.7 83 58-140 12-96 (105)
28 2cq1_A PTB-like protein L; RRM 99.8 5E-20 1.7E-24 113.5 13.0 84 57-140 10-95 (101)
29 1x4c_A Splicing factor, argini 99.8 8.1E-20 2.8E-24 114.1 13.6 85 56-141 9-98 (108)
30 1wex_A Hypothetical protein (r 99.8 4.8E-20 1.7E-24 114.2 12.2 83 58-140 11-95 (104)
31 1x4d_A Matrin 3; structural ge 99.8 2.3E-20 7.8E-25 115.1 10.3 80 58-137 11-93 (102)
32 2wbr_A GW182, gawky, LD47780P; 99.8 2.9E-20 9.9E-25 110.4 10.0 75 60-134 5-79 (89)
33 2cpj_A Non-POU domain-containi 99.8 7.9E-20 2.7E-24 112.3 11.4 83 57-139 10-92 (99)
34 2cq3_A RNA-binding protein 9; 99.8 2.5E-19 8.6E-24 110.8 13.7 85 57-141 10-98 (103)
35 1x4g_A Nucleolysin TIAR; struc 99.8 1.3E-19 4.5E-24 113.2 12.5 83 58-140 21-103 (109)
36 2dgt_A RNA-binding protein 30; 99.8 1.6E-19 5.6E-24 109.5 12.5 82 57-140 5-86 (92)
37 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.6E-19 9E-24 110.7 13.3 84 57-140 10-97 (103)
38 2dnq_A RNA-binding protein 4B; 99.8 1.8E-19 6.1E-24 108.9 12.2 82 57-140 3-84 (90)
39 2ad9_A Polypyrimidine tract-bi 99.8 9.1E-20 3.1E-24 115.2 11.0 85 56-140 25-111 (119)
40 1whw_A Hypothetical protein ri 99.8 3.2E-19 1.1E-23 109.5 12.7 83 58-140 4-92 (99)
41 2cph_A RNA binding motif prote 99.8 2.7E-19 9.2E-24 111.3 12.2 84 57-140 10-101 (107)
42 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.5E-19 5.3E-24 111.6 10.9 85 58-142 8-98 (102)
43 2fy1_A RNA-binding motif prote 99.8 2.6E-19 9E-24 113.1 12.2 82 58-139 3-89 (116)
44 2d9p_A Polyadenylate-binding p 99.8 1.5E-19 5.3E-24 111.8 10.8 85 57-141 10-98 (103)
45 1x5t_A Splicing factor 3B subu 99.8 1.4E-19 4.9E-24 110.5 10.5 81 60-140 3-90 (96)
46 2cpd_A Apobec-1 stimulating pr 99.8 5.4E-19 1.9E-23 108.6 13.2 80 58-139 11-92 (99)
47 2dgo_A Cytotoxic granule-assoc 99.8 5.5E-19 1.9E-23 111.4 13.4 84 57-140 10-99 (115)
48 2dgx_A KIAA0430 protein; RRM d 99.8 3.2E-19 1.1E-23 109.1 12.0 82 58-139 5-93 (96)
49 1why_A Hypothetical protein ri 99.8 2.3E-19 7.9E-24 109.8 11.2 81 58-138 13-95 (97)
50 2dnz_A Probable RNA-binding pr 99.8 4.9E-19 1.7E-23 107.9 12.5 82 59-140 2-89 (95)
51 2ytc_A PRE-mRNA-splicing facto 99.8 1.4E-19 4.6E-24 108.2 9.8 79 56-134 6-85 (85)
52 1x4a_A Splicing factor, argini 99.8 6.1E-19 2.1E-23 110.2 13.2 83 57-139 17-102 (109)
53 2dgs_A DAZ-associated protein 99.8 5.3E-19 1.8E-23 108.6 12.6 84 57-141 5-94 (99)
54 2cpf_A RNA binding motif prote 99.8 2.5E-19 8.6E-24 109.8 11.0 81 60-140 3-92 (98)
55 2dnp_A RNA-binding protein 14; 99.8 4.3E-19 1.5E-23 107.2 11.8 81 57-139 4-84 (90)
56 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.6E-19 5.6E-24 120.7 10.8 85 56-140 66-156 (165)
57 2dnm_A SRP46 splicing factor; 99.8 2.7E-19 9.2E-24 110.7 11.0 84 57-140 8-97 (103)
58 2cpz_A CUG triplet repeat RNA- 99.8 4E-19 1.4E-23 112.0 11.8 85 57-141 20-110 (115)
59 4f25_A Polyadenylate-binding p 99.8 2.3E-19 7.8E-24 113.2 10.6 78 61-138 4-85 (115)
60 3ex7_B RNA-binding protein 8A; 99.8 1.8E-19 6E-24 115.4 10.1 85 56-140 16-106 (126)
61 1u6f_A Tcubp1, RNA-binding pro 99.8 4.2E-19 1.4E-23 115.5 12.0 85 57-141 37-127 (139)
62 2hvz_A Splicing factor, argini 99.8 2.5E-19 8.6E-24 110.4 10.4 78 63-140 1-79 (101)
63 1x4f_A Matrin 3; structural ge 99.8 1E-19 3.6E-24 113.7 8.7 83 59-141 22-107 (112)
64 2dnh_A Bruno-like 5, RNA bindi 99.8 4.4E-19 1.5E-23 110.1 11.6 84 58-141 11-102 (105)
65 1x5s_A Cold-inducible RNA-bind 99.8 4E-19 1.4E-23 109.7 11.2 84 57-140 7-96 (102)
66 1x5u_A Splicing factor 3B subu 99.8 6.2E-19 2.1E-23 109.4 11.7 84 57-140 10-99 (105)
67 3md1_A Nuclear and cytoplasmic 99.8 5E-19 1.7E-23 105.2 10.8 75 63-137 2-82 (83)
68 4a8x_A RNA-binding protein wit 99.8 5.6E-19 1.9E-23 106.1 11.1 79 60-138 2-87 (88)
69 2cqh_A IGF-II mRNA-binding pro 99.8 1.7E-19 5.8E-24 109.6 8.7 82 58-140 4-87 (93)
70 2la4_A Nuclear and cytoplasmic 99.8 2.3E-19 8E-24 110.6 9.5 78 59-136 24-101 (101)
71 2cq0_A Eukaryotic translation 99.8 5.3E-19 1.8E-23 109.3 10.9 84 57-140 10-99 (103)
72 2do0_A HnRNP M, heterogeneous 99.8 1.7E-18 5.8E-23 108.9 13.4 84 57-140 10-98 (114)
73 1wf1_A RNA-binding protein RAL 99.8 5.8E-19 2E-23 110.5 11.1 80 59-140 24-104 (110)
74 2kvi_A Nuclear polyadenylated 99.8 2E-19 6.9E-24 110.0 8.7 81 58-140 6-87 (96)
75 1x4h_A RNA-binding protein 28; 99.8 1.2E-18 4.1E-23 109.1 12.4 84 57-140 10-105 (111)
76 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.5E-19 2.6E-23 104.9 10.7 77 58-134 3-85 (85)
77 2do4_A Squamous cell carcinoma 99.8 1.2E-18 4.2E-23 107.1 11.8 82 57-138 12-98 (100)
78 3s8s_A Histone-lysine N-methyl 99.8 8.4E-19 2.9E-23 109.8 11.2 78 59-136 3-86 (110)
79 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.7E-19 2.3E-23 105.5 10.3 78 59-136 3-86 (87)
80 2cqd_A RNA-binding region cont 99.8 1.8E-18 6.3E-23 109.1 12.8 83 56-139 11-99 (116)
81 2xnq_A Nuclear polyadenylated 99.8 1.6E-18 5.5E-23 106.1 11.9 79 57-137 17-96 (97)
82 2cpe_A RNA-binding protein EWS 99.8 1.3E-18 4.3E-23 109.4 11.5 83 58-140 11-107 (113)
83 2dgp_A Bruno-like 4, RNA bindi 99.8 1.1E-18 3.8E-23 108.4 11.1 84 57-140 8-100 (106)
84 2x1f_A MRNA 3'-END-processing 99.8 1.3E-18 4.5E-23 106.2 11.3 77 61-137 1-83 (96)
85 2dgv_A HnRNP M, heterogeneous 99.8 7E-19 2.4E-23 106.6 9.9 82 57-138 3-88 (92)
86 2lxi_A RNA-binding protein 10; 99.8 1.8E-19 6.2E-24 109.1 7.2 76 62-137 1-84 (91)
87 1whx_A Hypothetical protein ri 99.8 8.3E-19 2.8E-23 110.0 10.5 78 60-137 8-85 (111)
88 3pgw_S U1-70K; protein-RNA com 99.8 4.5E-19 1.5E-23 134.8 11.0 82 60-141 100-187 (437)
89 2lkz_A RNA-binding protein 5; 99.8 4.6E-19 1.6E-23 108.0 8.9 79 57-135 4-94 (95)
90 1wi8_A EIF-4B, eukaryotic tran 99.8 1.9E-18 6.6E-23 107.0 11.9 82 57-140 10-98 (104)
91 1x5p_A Negative elongation fac 99.8 3.8E-18 1.3E-22 104.4 13.0 81 58-140 11-91 (97)
92 2jvo_A Nucleolar protein 3; nu 99.8 1.2E-18 4E-23 108.8 10.7 81 56-138 25-105 (108)
93 1oo0_B CG8781-PA, drosophila Y 99.8 1.3E-18 4.3E-23 108.9 10.9 84 56-139 20-109 (110)
94 2dhg_A TRNA selenocysteine ass 99.8 8.9E-19 3E-23 108.5 9.8 83 58-140 5-94 (104)
95 2cpi_A CCR4-NOT transcription 99.8 9.9E-19 3.4E-23 109.6 10.0 81 58-138 11-103 (111)
96 2jvr_A Nucleolar protein 3; RN 99.8 8.2E-19 2.8E-23 109.8 9.3 79 58-136 24-105 (111)
97 2ywk_A Putative RNA-binding pr 99.8 1.4E-18 4.8E-23 105.8 10.1 79 57-135 11-94 (95)
98 2cq2_A Hypothetical protein LO 99.8 1.7E-18 5.8E-23 108.4 10.6 80 58-137 21-107 (114)
99 2dng_A Eukaryotic translation 99.8 3.2E-18 1.1E-22 105.8 11.5 82 57-140 10-97 (103)
100 2e5h_A Zinc finger CCHC-type a 99.8 2.3E-18 8E-23 104.7 10.7 78 57-134 11-94 (94)
101 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.7E-18 9.3E-23 113.7 11.8 82 57-138 34-121 (156)
102 1p27_B RNA-binding protein 8A; 99.8 1.4E-18 4.7E-23 108.0 9.7 82 56-137 17-104 (106)
103 2err_A Ataxin-2-binding protei 99.8 1.7E-18 5.9E-23 108.2 10.1 81 56-136 23-107 (109)
104 1nu4_A U1A RNA binding domain; 99.8 2.2E-18 7.5E-23 105.4 10.0 80 58-137 4-90 (97)
105 2cqc_A Arginine/serine-rich sp 99.8 2.7E-18 9.3E-23 104.5 10.3 79 57-135 10-94 (95)
106 2jrs_A RNA-binding protein 39; 99.8 2.1E-18 7.3E-23 107.6 9.5 82 56-137 20-107 (108)
107 2fc9_A NCL protein; structure 99.8 6.4E-18 2.2E-22 104.1 11.4 84 57-140 10-95 (101)
108 3ulh_A THO complex subunit 4; 99.8 5.2E-18 1.8E-22 105.5 11.1 80 56-135 23-107 (107)
109 3beg_B Splicing factor, argini 99.8 2.3E-18 7.7E-23 108.6 9.5 80 59-139 13-97 (115)
110 2dis_A Unnamed protein product 99.8 6.6E-18 2.3E-22 105.4 11.5 81 58-138 4-94 (109)
111 2e5j_A Methenyltetrahydrofolat 99.8 5E-18 1.7E-22 103.9 10.7 80 58-138 15-96 (97)
112 3ucg_A Polyadenylate-binding p 99.8 4.6E-18 1.6E-22 102.3 10.3 75 61-136 5-85 (89)
113 2div_A TRNA selenocysteine ass 99.8 3.2E-18 1.1E-22 105.1 9.7 81 58-138 5-96 (99)
114 2la6_A RNA-binding protein FUS 99.8 4E-18 1.4E-22 104.6 9.8 78 57-134 8-99 (99)
115 2khc_A Testis-specific RNP-typ 99.8 3.6E-18 1.2E-22 108.1 9.6 79 56-134 34-118 (118)
116 2e5i_A Heterogeneous nuclear r 99.8 1.6E-17 5.4E-22 105.7 12.5 90 63-152 26-119 (124)
117 3zzy_A Polypyrimidine tract-bi 99.8 1.4E-17 4.9E-22 106.4 12.3 93 60-152 26-123 (130)
118 2a3j_A U1 small nuclear ribonu 99.8 5.4E-18 1.8E-22 108.5 10.3 82 56-137 23-111 (127)
119 2dh8_A DAZ-associated protein 99.8 4.1E-18 1.4E-22 105.6 9.2 83 57-140 11-99 (105)
120 2kxn_B Transformer-2 protein h 99.8 3.9E-18 1.3E-22 109.6 9.3 82 56-137 40-127 (129)
121 2cpx_A Hypothetical protein FL 99.8 6.1E-18 2.1E-22 106.5 9.9 84 58-141 21-110 (115)
122 3p5t_L Cleavage and polyadenyl 99.8 8.2E-19 2.8E-23 106.0 5.2 77 63-139 2-86 (90)
123 2jwn_A Embryonic polyadenylate 99.8 6.7E-18 2.3E-22 107.7 9.7 78 61-139 35-118 (124)
124 1sjr_A Polypyrimidine tract-bi 99.8 1.4E-17 4.9E-22 110.2 11.4 80 58-137 42-125 (164)
125 1wg1_A KIAA1579 protein, homol 99.8 1.2E-17 4.1E-22 100.4 9.9 76 60-136 3-78 (88)
126 1s79_A Lupus LA protein; RRM, 99.7 5E-18 1.7E-22 105.0 8.3 77 58-135 7-88 (103)
127 2cqg_A TDP-43, TAR DNA-binding 99.7 3.7E-17 1.3E-21 100.9 12.1 81 57-139 10-96 (103)
128 2e5g_A U6 snRNA-specific termi 99.7 2.3E-17 7.8E-22 100.3 11.0 80 58-138 4-84 (94)
129 1p1t_A Cleavage stimulation fa 99.7 1.5E-18 5E-23 107.5 5.7 81 59-139 5-91 (104)
130 2kt5_A RNA and export factor-b 99.7 3.6E-17 1.2E-21 104.3 12.3 83 58-140 31-118 (124)
131 1x4b_A Heterogeneous nuclear r 99.7 1.6E-17 5.4E-22 104.8 10.5 79 61-140 26-110 (116)
132 3lqv_A PRE-mRNA branch site pr 99.7 1.5E-17 5.2E-22 104.7 10.3 79 58-136 4-85 (115)
133 2nlw_A Eukaryotic translation 99.7 1.3E-17 4.4E-22 103.5 9.8 78 59-136 12-100 (105)
134 3ns6_A Eukaryotic translation 99.7 2.7E-18 9.3E-23 105.7 6.3 76 60-135 4-92 (100)
135 2fc8_A NCL protein; structure 99.7 2.8E-17 9.4E-22 101.3 10.4 83 57-139 10-95 (102)
136 2dgw_A Probable RNA-binding pr 99.7 3.3E-17 1.1E-21 99.0 10.5 77 58-136 6-87 (91)
137 1x4e_A RNA binding motif, sing 99.7 2.6E-18 9.1E-23 102.5 5.4 76 59-134 2-83 (85)
138 2cqp_A RNA-binding protein 12; 99.7 6.4E-18 2.2E-22 103.5 7.3 79 58-136 11-95 (98)
139 1x5o_A RNA binding motif, sing 99.7 3.3E-17 1.1E-21 103.0 10.2 80 57-136 20-112 (114)
140 3s7r_A Heterogeneous nuclear r 99.7 3.7E-17 1.3E-21 97.9 10.0 76 57-133 6-87 (87)
141 2m2b_A RNA-binding protein 10; 99.7 1E-17 3.6E-22 107.9 8.0 83 57-140 18-112 (131)
142 2e44_A Insulin-like growth fac 99.7 3.1E-17 1.1E-21 100.0 9.6 80 58-137 11-93 (96)
143 2bz2_A Negative elongation fac 99.7 2.9E-17 9.9E-22 104.4 9.7 80 58-139 35-114 (121)
144 1fjc_A Nucleolin RBD2, protein 99.7 2.5E-17 8.4E-22 100.5 9.0 81 58-139 12-94 (96)
145 2cq4_A RNA binding motif prote 99.7 6.6E-18 2.3E-22 106.2 6.5 75 61-136 24-104 (114)
146 2j76_E EIF-4B, EIF4B, eukaryot 99.7 8.9E-18 3E-22 103.3 6.8 78 57-136 14-98 (100)
147 2hgn_A Heterogeneous nuclear r 99.7 2.5E-18 8.6E-23 111.6 4.5 79 58-138 42-125 (139)
148 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.5E-17 1.5E-21 105.8 10.5 77 57-133 58-140 (140)
149 1wg5_A Heterogeneous nuclear r 99.7 6.4E-17 2.2E-21 100.1 10.5 80 58-138 11-96 (104)
150 2hzc_A Splicing factor U2AF 65 99.7 4E-17 1.4E-21 97.7 9.3 73 59-132 3-86 (87)
151 2ek1_A RNA-binding protein 12; 99.7 8.6E-18 2.9E-22 102.3 6.2 77 59-135 12-94 (95)
152 2rs2_A Musashi-1, RNA-binding 99.7 6.7E-17 2.3E-21 100.9 10.4 81 57-138 20-106 (109)
153 3n9u_C Cleavage and polyadenyl 99.7 3.8E-17 1.3E-21 108.2 9.8 77 60-136 53-137 (156)
154 3tyt_A Heterogeneous nuclear r 99.7 7.1E-17 2.4E-21 111.5 11.3 77 60-136 2-80 (205)
155 2krb_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 98.8 6.2 69 62-130 1-80 (81)
156 2diu_A KIAA0430 protein; struc 99.7 2.1E-16 7.1E-21 94.7 11.0 75 59-137 5-85 (96)
157 2mss_A Protein (musashi1); RNA 99.7 2.1E-17 7.3E-22 96.3 6.3 69 64-133 1-75 (75)
158 2ki2_A SS-DNA binding protein 99.7 6.1E-18 2.1E-22 102.0 3.9 76 63-139 2-83 (90)
159 1wez_A HnRNP H', FTP-3, hetero 99.7 7.3E-17 2.5E-21 99.6 8.8 78 58-137 11-93 (102)
160 1wf0_A TDP-43, TAR DNA-binding 99.7 5.2E-17 1.8E-21 97.5 7.6 79 60-140 3-82 (88)
161 2hgl_A HNRPF protein, heteroge 99.7 3.3E-17 1.1E-21 106.0 7.2 79 56-135 38-124 (136)
162 2cpy_A RNA-binding protein 12; 99.7 5.3E-17 1.8E-21 102.2 8.0 79 58-137 11-95 (114)
163 1fj7_A Nucleolin RBD1, protein 99.7 1.3E-16 4.5E-21 98.1 9.6 80 59-139 14-98 (101)
164 2lcw_A RNA-binding protein FUS 99.5 1E-18 3.5E-23 110.3 0.0 82 58-139 3-98 (116)
165 3egn_A RNA-binding protein 40; 99.7 4.7E-17 1.6E-21 106.2 7.8 85 56-140 39-134 (143)
166 3u1l_A PRE-mRNA-splicing facto 99.7 5.6E-17 1.9E-21 113.8 8.3 80 58-137 130-230 (240)
167 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.1E-17 1.1E-21 96.0 5.9 70 63-133 1-76 (77)
168 3d2w_A TAR DNA-binding protein 99.7 2.9E-16 9.9E-21 94.5 10.0 76 58-137 7-85 (89)
169 2dnn_A RNA-binding protein 12; 99.7 2.1E-17 7.3E-22 103.1 5.0 91 60-155 14-109 (109)
170 2db1_A Heterogeneous nuclear r 99.7 1.1E-16 3.8E-21 101.3 7.7 77 58-135 13-97 (118)
171 1fxl_A Paraneoplastic encephal 99.7 6.5E-16 2.2E-20 102.5 11.4 76 62-137 2-83 (167)
172 1b7f_A Protein (SXL-lethal pro 99.7 1.2E-15 3.9E-20 101.6 11.2 77 61-137 2-84 (168)
173 1iqt_A AUF1, heterogeneous nuc 99.7 9.3E-17 3.2E-21 93.5 4.9 69 64-133 1-75 (75)
174 3q2s_C Cleavage and polyadenyl 99.7 2.3E-16 8E-21 110.5 7.8 75 61-135 67-149 (229)
175 2f3j_A RNA and export factor b 99.7 5.5E-16 1.9E-20 104.6 9.3 79 58-136 84-167 (177)
176 3md3_A Nuclear and cytoplasmic 99.6 1.6E-15 5.6E-20 100.5 11.0 76 63-138 1-81 (166)
177 4f02_A Polyadenylate-binding p 99.6 1.4E-15 4.9E-20 105.4 10.9 79 58-136 11-95 (213)
178 2xs2_A Deleted in azoospermia- 99.6 1.8E-16 6E-21 97.7 5.5 77 59-137 6-87 (102)
179 2lmi_A GRSF-1, G-rich sequence 99.6 1.8E-16 6.2E-21 98.6 5.5 77 58-135 7-91 (107)
180 1wel_A RNA-binding protein 12; 99.6 2.4E-16 8.3E-21 100.5 5.7 78 58-136 21-104 (124)
181 3sde_A Paraspeckle component 1 99.6 1.9E-15 6.6E-20 107.7 10.7 78 58-135 18-95 (261)
182 2adc_A Polypyrimidine tract-bi 99.6 3.9E-15 1.3E-19 104.3 11.7 80 57-136 29-110 (229)
183 4f25_A Polyadenylate-binding p 99.6 3.3E-16 1.1E-20 98.6 5.4 74 2-77 10-112 (115)
184 2dit_A HIV TAT specific factor 99.6 9.4E-15 3.2E-19 91.5 11.8 81 58-138 11-104 (112)
185 1qm9_A Polypyrimidine tract-bi 99.6 2E-15 6.7E-20 103.3 9.2 76 61-136 2-79 (198)
186 3pgw_A U1-A; protein-RNA compl 99.6 5.8E-15 2E-19 106.1 11.4 80 58-137 5-91 (282)
187 2g4b_A Splicing factor U2AF 65 99.6 6.2E-15 2.1E-19 98.4 10.6 75 61-136 3-88 (172)
188 2yh0_A Splicing factor U2AF 65 99.6 1.2E-14 4.2E-19 99.1 11.9 75 61-136 3-88 (198)
189 2dnl_A Cytoplasmic polyadenyla 99.6 1E-14 3.4E-19 91.6 10.4 72 58-132 4-84 (114)
190 2pe8_A Splicing factor 45; RRM 99.6 1.4E-14 4.8E-19 89.7 10.6 77 59-135 5-93 (105)
191 1l3k_A Heterogeneous nuclear r 99.6 8.8E-15 3E-19 99.6 10.1 80 57-137 8-93 (196)
192 2dha_A FLJ20171 protein; RRM d 99.6 1.6E-15 5.5E-20 96.4 5.9 76 59-135 20-104 (123)
193 2hgm_A HNRPF protein, heteroge 99.6 4.2E-15 1.5E-19 94.8 7.7 77 57-135 37-120 (126)
194 2qfj_A FBP-interacting repress 99.6 1.5E-14 5.2E-19 99.9 10.2 76 61-136 27-108 (216)
195 3nmr_A Cugbp ELAV-like family 99.6 1.4E-14 5E-19 96.8 9.3 77 61-137 2-89 (175)
196 2voo_A Lupus LA protein; RNA-b 99.6 2.3E-14 7.8E-19 98.0 9.8 74 62-136 109-187 (193)
197 2lkz_A RNA-binding protein 5; 99.6 5.9E-15 2E-19 89.7 5.7 67 2-68 14-90 (95)
198 3tht_A Alkylated DNA repair pr 99.5 4.1E-14 1.4E-18 104.1 10.2 78 57-134 13-97 (345)
199 1fje_B Nucleolin RBD12, protei 99.5 5.1E-14 1.8E-18 94.3 9.7 80 58-138 9-93 (175)
200 2j8a_A Histone-lysine N-methyl 99.5 2.1E-14 7E-19 90.8 7.2 73 63-135 3-95 (136)
201 3v4m_A Splicing factor U2AF 65 99.5 9.4E-14 3.2E-18 85.9 9.5 76 60-135 3-96 (105)
202 4fxv_A ELAV-like protein 1; RN 99.5 2.2E-14 7.5E-19 87.9 5.9 64 2-67 24-93 (99)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 2E-13 6.7E-18 83.6 10.0 67 72-140 27-94 (100)
204 2cjk_A Nuclear polyadenylated 99.5 1.2E-13 4E-18 91.8 8.7 73 61-135 2-80 (167)
205 2wbr_A GW182, gawky, LD47780P; 99.5 3.9E-14 1.3E-18 84.0 4.4 77 2-84 12-88 (89)
206 2lxi_A RNA-binding protein 10; 99.5 4.2E-14 1.4E-18 85.3 4.0 65 2-67 6-77 (91)
207 3s8s_A Histone-lysine N-methyl 99.5 1.3E-13 4.3E-18 86.1 6.3 65 2-68 11-81 (110)
208 1jmt_A Splicing factor U2AF 35 99.5 4.1E-14 1.4E-18 87.4 3.8 66 68-133 21-103 (104)
209 3ue2_A Poly(U)-binding-splicin 99.5 6.6E-13 2.2E-17 83.7 9.3 75 61-135 19-108 (118)
210 3s6e_A RNA-binding protein 39; 99.4 1.6E-12 5.6E-17 81.4 10.2 76 60-135 5-92 (114)
211 3p5t_L Cleavage and polyadenyl 99.4 3.7E-13 1.2E-17 80.9 5.0 64 2-67 6-77 (90)
212 3md1_A Nuclear and cytoplasmic 99.4 8.6E-13 2.9E-17 77.9 6.3 56 2-57 6-67 (83)
213 3lqv_A PRE-mRNA branch site pr 99.4 1.2E-12 4.1E-17 82.1 6.8 85 2-88 13-109 (115)
214 3bs9_A Nucleolysin TIA-1 isofo 99.4 1.2E-12 4E-17 78.0 6.2 55 2-56 11-71 (87)
215 1x4e_A RNA binding motif, sing 99.4 8.1E-13 2.8E-17 78.4 5.3 54 2-55 10-69 (85)
216 2hvz_A Splicing factor, argini 99.4 5.4E-13 1.8E-17 81.8 4.6 49 2-55 5-59 (101)
217 3r27_A HnRNP L, heterogeneous 99.4 3E-13 1E-17 82.6 3.4 67 2-68 26-92 (100)
218 1owx_A Lupus LA protein, SS-B, 99.4 9.6E-12 3.3E-16 78.2 10.3 81 54-134 10-94 (121)
219 2ek1_A RNA-binding protein 12; 99.4 1.4E-12 4.8E-17 79.0 6.3 55 2-56 20-80 (95)
220 2fc8_A NCL protein; structure 99.4 1.2E-12 4.2E-17 80.3 6.1 55 2-56 20-77 (102)
221 2dnr_A Synaptojanin-1; RRM dom 99.4 8.8E-12 3E-16 74.0 9.3 76 58-136 3-86 (91)
222 2la6_A RNA-binding protein FUS 99.4 1.5E-12 5.2E-17 79.5 6.2 56 2-57 18-87 (99)
223 2cqp_A RNA-binding protein 12; 99.4 1.8E-12 6E-17 79.0 6.3 55 2-56 20-80 (98)
224 1wez_A HnRNP H', FTP-3, hetero 99.3 3.3E-12 1.1E-16 78.5 7.4 54 2-57 20-78 (102)
225 2dnz_A Probable RNA-binding pr 99.3 2.1E-12 7.1E-17 78.2 6.5 56 2-57 10-71 (95)
226 1sjq_A Polypyrimidine tract-bi 99.3 3.5E-13 1.2E-17 83.1 2.9 67 2-68 21-87 (105)
227 3mdf_A Peptidyl-prolyl CIS-tra 99.3 1.1E-12 3.9E-17 77.7 4.8 56 2-57 12-73 (85)
228 2dnn_A RNA-binding protein 12; 99.3 1.7E-12 5.9E-17 80.7 5.6 62 2-67 21-87 (109)
229 1x5t_A Splicing factor 3B subu 99.3 1.7E-12 5.8E-17 78.7 5.4 56 2-57 10-72 (96)
230 2cq0_A Eukaryotic translation 99.3 2.4E-12 8.2E-17 79.1 6.1 55 2-56 20-80 (103)
231 2cqc_A Arginine/serine-rich sp 99.3 2.3E-12 8E-17 77.9 5.9 64 2-67 20-89 (95)
232 3ns6_A Eukaryotic translation 99.3 5.2E-13 1.8E-17 81.8 2.9 65 2-67 11-87 (100)
233 2e5h_A Zinc finger CCHC-type a 99.3 2.5E-12 8.6E-17 77.7 5.8 55 2-56 21-81 (94)
234 1whw_A Hypothetical protein ri 99.3 1.7E-12 5.9E-17 79.2 5.0 64 2-67 13-82 (99)
235 2cpz_A CUG triplet repeat RNA- 99.3 2.7E-12 9.4E-17 80.4 6.0 55 2-56 30-90 (115)
236 1x4d_A Matrin 3; structural ge 99.3 6.4E-13 2.2E-17 81.6 3.0 66 2-67 20-86 (102)
237 2dgp_A Bruno-like 4, RNA bindi 99.3 1.7E-12 5.8E-17 80.2 4.9 66 2-67 18-90 (106)
238 1x5s_A Cold-inducible RNA-bind 99.3 2.2E-12 7.6E-17 79.1 5.3 56 2-57 17-78 (102)
239 1wex_A Hypothetical protein (r 99.3 1.3E-12 4.5E-17 80.6 4.1 67 2-68 20-86 (104)
240 1p27_B RNA-binding protein 8A; 99.3 3.8E-12 1.3E-16 78.6 6.2 56 2-57 28-89 (106)
241 2div_A TRNA selenocysteine ass 99.3 3E-12 1E-16 78.1 5.7 55 2-56 14-75 (99)
242 2x1f_A MRNA 3'-END-processing 99.3 2.2E-12 7.6E-17 78.3 5.0 64 2-67 7-76 (96)
243 2do4_A Squamous cell carcinoma 99.3 3.8E-12 1.3E-16 77.8 6.1 63 2-67 22-90 (100)
244 3ucg_A Polyadenylate-binding p 99.3 3.4E-12 1.2E-16 76.3 5.7 55 2-57 11-71 (89)
245 2dgo_A Cytotoxic granule-assoc 99.3 4.3E-12 1.5E-16 79.5 6.3 54 2-55 20-79 (115)
246 2dng_A Eukaryotic translation 99.3 3.4E-12 1.2E-16 78.5 5.7 53 2-55 20-77 (103)
247 1s79_A Lupus LA protein; RRM, 99.3 2.9E-12 9.8E-17 78.9 5.2 53 2-56 16-74 (103)
248 2kxn_B Transformer-2 protein h 99.3 4.7E-12 1.6E-16 81.1 6.4 64 2-67 51-120 (129)
249 2mss_A Protein (musashi1); RNA 99.3 1.5E-12 5.3E-17 75.4 3.8 54 2-56 4-63 (75)
250 1uaw_A Mouse-musashi-1; RNP-ty 99.3 2E-12 7E-17 75.2 4.3 53 2-54 5-63 (77)
251 2cqb_A Peptidyl-prolyl CIS-tra 99.3 2.1E-12 7.3E-17 79.2 4.6 54 2-55 17-76 (102)
252 2dgs_A DAZ-associated protein 99.3 4.2E-12 1.4E-16 77.5 5.8 55 2-57 15-75 (99)
253 2dnh_A Bruno-like 5, RNA bindi 99.3 4.9E-12 1.7E-16 78.0 6.1 65 2-67 20-91 (105)
254 2dgw_A Probable RNA-binding pr 99.3 4.6E-12 1.6E-16 76.1 5.8 53 2-56 15-72 (91)
255 1x4f_A Matrin 3; structural ge 99.3 7.5E-13 2.6E-17 82.6 2.3 67 2-68 30-97 (112)
256 2jrs_A RNA-binding protein 39; 99.3 4.4E-12 1.5E-16 78.8 5.7 64 2-67 31-100 (108)
257 2dnm_A SRP46 splicing factor; 99.3 2E-12 6.8E-17 79.5 4.1 56 2-57 18-79 (103)
258 3n9u_C Cleavage and polyadenyl 99.3 4.5E-12 1.5E-16 83.7 6.0 65 2-68 60-132 (156)
259 2cq1_A PTB-like protein L; RRM 99.3 1.5E-12 5.2E-17 79.9 3.5 66 2-67 20-85 (101)
260 1x5u_A Splicing factor 3B subu 99.3 3E-12 1E-16 78.9 4.6 56 2-57 20-81 (105)
261 3ulh_A THO complex subunit 4; 99.3 5.3E-12 1.8E-16 78.1 5.8 55 2-57 34-94 (107)
262 1p1t_A Cleavage stimulation fa 99.3 4E-12 1.4E-16 78.2 5.2 65 2-68 13-83 (104)
263 2ywk_A Putative RNA-binding pr 99.3 6.2E-12 2.1E-16 76.1 5.8 55 2-57 21-81 (95)
264 2cpf_A RNA binding motif prote 99.3 3.3E-12 1.1E-16 77.8 4.5 55 2-56 10-73 (98)
265 2fy1_A RNA-binding motif prote 99.3 6.3E-12 2.1E-16 79.0 5.7 55 2-57 12-72 (116)
266 2d9p_A Polyadenylate-binding p 99.3 7.8E-12 2.7E-16 76.8 6.0 54 2-57 20-79 (103)
267 2khc_A Testis-specific RNP-typ 99.3 4.8E-12 1.6E-16 79.6 5.1 55 2-56 45-105 (118)
268 2fc9_A NCL protein; structure 99.3 5E-12 1.7E-16 77.4 5.1 53 2-55 20-75 (101)
269 1x4h_A RNA-binding protein 28; 99.3 4.7E-12 1.6E-16 78.8 5.0 53 2-54 20-78 (111)
270 1x5o_A RNA binding motif, sing 99.3 8.8E-12 3E-16 78.0 6.2 55 2-57 30-90 (114)
271 2m2b_A RNA-binding protein 10; 99.3 2.3E-12 8E-17 82.7 3.6 65 2-67 28-102 (131)
272 2dhg_A TRNA selenocysteine ass 99.3 8.6E-12 2.9E-16 76.7 5.9 55 2-57 14-75 (104)
273 3s7r_A Heterogeneous nuclear r 99.3 7.6E-12 2.6E-16 74.5 5.5 51 2-52 16-72 (87)
274 1oo0_B CG8781-PA, drosophila Y 99.3 6E-12 2.1E-16 78.2 5.2 55 2-56 31-91 (110)
275 2cpe_A RNA-binding protein EWS 99.3 6.4E-12 2.2E-16 78.5 5.3 64 2-67 20-97 (113)
276 1wel_A RNA-binding protein 12; 99.3 5.4E-12 1.9E-16 80.2 5.0 63 2-67 30-98 (124)
277 2ad9_A Polypyrimidine tract-bi 99.3 1.1E-12 3.9E-17 82.6 1.7 66 2-67 36-101 (119)
278 2cqd_A RNA-binding region cont 99.3 4.4E-12 1.5E-16 79.6 4.3 63 2-67 22-90 (116)
279 1u6f_A Tcubp1, RNA-binding pro 99.3 7.2E-12 2.5E-16 81.0 5.4 64 2-67 47-116 (139)
280 2dh8_A DAZ-associated protein 99.3 1E-11 3.5E-16 76.5 5.7 53 2-55 21-79 (105)
281 4a8x_A RNA-binding protein wit 99.2 3.7E-12 1.3E-16 75.9 3.5 56 2-57 9-71 (88)
282 2cq4_A RNA binding motif prote 99.2 6.5E-12 2.2E-16 78.6 4.8 54 2-56 30-89 (114)
283 2cph_A RNA binding motif prote 99.2 7.3E-12 2.5E-16 77.4 4.9 56 2-57 20-83 (107)
284 3ex7_B RNA-binding protein 8A; 99.2 6.1E-12 2.1E-16 80.0 4.7 56 2-57 27-88 (126)
285 1wi8_A EIF-4B, eukaryotic tran 99.2 7.9E-12 2.7E-16 76.9 5.0 54 2-56 20-79 (104)
286 1h2v_Z 20 kDa nuclear CAP bind 99.2 1.5E-11 5E-16 81.1 6.3 56 2-57 44-105 (156)
287 2ki2_A SS-DNA binding protein 99.2 4.6E-12 1.6E-16 75.9 3.5 55 2-57 6-66 (90)
288 2rs2_A Musashi-1, RNA-binding 99.2 1E-11 3.5E-16 77.2 5.0 63 2-67 30-98 (109)
289 2db1_A Heterogeneous nuclear r 99.2 1.3E-11 4.4E-16 77.8 5.3 77 2-86 22-107 (118)
290 1wg5_A Heterogeneous nuclear r 99.2 8.9E-12 3.1E-16 76.8 4.4 53 2-56 20-79 (104)
291 2do0_A HnRNP M, heterogeneous 99.2 2.1E-11 7.3E-16 76.1 6.1 55 2-57 20-80 (114)
292 2jwn_A Embryonic polyadenylate 99.2 1.3E-11 4.5E-16 78.3 5.1 54 2-56 41-100 (124)
293 2jvr_A Nucleolar protein 3; RN 99.2 1.7E-11 5.9E-16 76.4 5.4 63 2-67 33-99 (111)
294 2krb_A Eukaryotic translation 99.2 5.8E-12 2E-16 74.1 3.1 56 2-57 6-71 (81)
295 1x4a_A Splicing factor, argini 99.2 3E-11 1E-15 74.9 6.6 55 2-56 27-84 (109)
296 2cqg_A TDP-43, TAR DNA-binding 99.2 2.3E-11 7.8E-16 74.7 5.8 51 2-52 20-76 (103)
297 2kt5_A RNA and export factor-b 99.2 2.2E-11 7.5E-16 77.3 5.9 63 2-67 40-108 (124)
298 2hgl_A HNRPF protein, heteroge 99.2 1.4E-11 4.7E-16 79.5 5.0 78 2-87 49-135 (136)
299 1whx_A Hypothetical protein ri 99.2 1.3E-11 4.5E-16 76.9 4.7 64 2-67 15-78 (111)
300 2dgv_A HnRNP M, heterogeneous 99.2 2.5E-11 8.6E-16 72.9 5.8 54 2-57 13-72 (92)
301 2kn4_A Immunoglobulin G-bindin 99.2 1.2E-11 4.1E-16 81.6 4.7 64 2-67 75-144 (158)
302 1iqt_A AUF1, heterogeneous nuc 99.2 8.4E-12 2.9E-16 72.2 3.5 51 2-52 4-60 (75)
303 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 1.4E-11 4.7E-16 79.6 4.8 55 2-56 68-128 (140)
304 2j76_E EIF-4B, EIF4B, eukaryot 99.2 1.1E-11 3.8E-16 75.8 4.1 55 2-57 24-84 (100)
305 2cpy_A RNA-binding protein 12; 99.2 1.3E-11 4.3E-16 77.3 4.4 62 2-67 20-88 (114)
306 2hgn_A Heterogeneous nuclear r 99.2 5.4E-12 1.8E-16 81.7 2.7 53 2-56 51-108 (139)
307 2lmi_A GRSF-1, G-rich sequence 99.2 1.2E-11 4.1E-16 76.6 4.1 76 2-85 16-100 (107)
308 2cq3_A RNA-binding protein 9; 99.2 4E-11 1.4E-15 73.6 6.3 54 2-57 20-79 (103)
309 1fj7_A Nucleolin RBD1, protein 99.2 6E-12 2.1E-16 77.0 2.5 63 2-67 22-89 (101)
310 2cqi_A Nucleolysin TIAR; RNA r 99.2 3.3E-11 1.1E-15 74.0 5.8 62 2-67 20-87 (103)
311 1x4b_A Heterogeneous nuclear r 99.2 2.3E-11 7.8E-16 76.3 5.1 53 2-55 32-90 (116)
312 1why_A Hypothetical protein ri 99.2 2.4E-11 8.2E-16 73.8 5.0 66 2-67 22-87 (97)
313 2dha_A FLJ20171 protein; RRM d 99.2 1.7E-11 5.8E-16 77.8 4.4 76 2-85 28-113 (123)
314 2hgm_A HNRPF protein, heteroge 99.2 1.2E-11 4.2E-16 78.7 3.7 50 2-52 47-103 (126)
315 1ufw_A Synaptojanin 2; RNP dom 99.2 5.3E-11 1.8E-15 71.0 6.2 74 58-134 11-93 (95)
316 2cpx_A Hypothetical protein FL 99.2 2.3E-11 8E-16 76.1 4.9 56 2-57 30-91 (115)
317 2dis_A Unnamed protein product 99.2 2.3E-11 7.8E-16 75.4 4.8 66 2-67 13-86 (109)
318 2dnl_A Cytoplasmic polyadenyla 99.2 1.5E-11 5.1E-16 77.0 3.9 53 2-54 13-73 (114)
319 2cq2_A Hypothetical protein LO 99.2 1.4E-11 4.9E-16 76.9 3.7 65 3-67 33-100 (114)
320 1rk8_A CG8781-PA, CG8781-PA pr 99.2 4.1E-11 1.4E-15 79.8 6.1 55 2-56 77-137 (165)
321 2cpi_A CCR4-NOT transcription 99.2 3.2E-11 1.1E-15 75.1 5.2 65 2-68 20-96 (111)
322 1fjc_A Nucleolin RBD2, protein 99.2 1.5E-11 5.2E-16 74.5 3.3 54 2-55 21-75 (96)
323 3q2s_C Cleavage and polyadenyl 99.2 2.6E-11 8.7E-16 84.9 4.6 65 2-68 73-145 (229)
324 2dgx_A KIAA0430 protein; RRM d 99.2 3.6E-11 1.2E-15 72.9 4.7 61 2-67 14-84 (96)
325 2lea_A Serine/arginine-rich sp 99.2 1.3E-11 4.4E-16 79.6 2.8 56 2-57 52-113 (135)
326 2cpj_A Non-POU domain-containi 99.1 1.7E-11 5.8E-16 74.8 2.7 56 2-57 20-75 (99)
327 2xs2_A Deleted in azoospermia- 99.1 1.7E-11 5.8E-16 75.1 2.6 49 2-51 14-68 (102)
328 1wg1_A KIAA1579 protein, homol 99.1 1.9E-11 6.4E-16 73.0 2.5 64 2-68 10-73 (88)
329 1x4c_A Splicing factor, argini 99.1 7.5E-11 2.6E-15 73.1 5.2 54 2-56 20-73 (108)
330 1sjr_A Polypyrimidine tract-bi 99.1 1.8E-10 6.2E-15 76.1 7.3 65 2-67 51-118 (164)
331 2hzc_A Splicing factor U2AF 65 99.1 2.3E-11 8E-16 72.2 2.8 54 2-56 11-75 (87)
332 2lcw_A RNA-binding protein FUS 98.7 5.8E-12 2E-16 79.1 0.0 55 2-56 12-80 (116)
333 2nlw_A Eukaryotic translation 99.1 3.2E-11 1.1E-15 74.4 3.4 65 2-68 20-95 (105)
334 2err_A Ataxin-2-binding protei 99.1 7.6E-11 2.6E-15 73.2 5.1 54 2-57 34-93 (109)
335 2la4_A Nuclear and cytoplasmic 99.1 2.2E-11 7.6E-16 74.5 2.5 55 2-56 32-86 (101)
336 2e5j_A Methenyltetrahydrofolat 99.1 1.5E-10 5.2E-15 70.2 6.0 53 2-58 24-81 (97)
337 2a3j_A U1 small nuclear ribonu 99.1 1.6E-10 5.4E-15 73.7 6.3 64 2-67 34-104 (127)
338 2ytc_A PRE-mRNA-splicing facto 99.1 3.7E-11 1.3E-15 71.1 3.2 54 2-55 17-71 (85)
339 2e5i_A Heterogeneous nuclear r 99.1 1.2E-10 4.2E-15 73.8 5.4 61 2-68 30-97 (124)
340 3beg_B Splicing factor, argini 99.1 5.8E-11 2E-15 74.4 3.8 55 2-57 21-75 (115)
341 2f3j_A RNA and export factor b 99.1 1E-10 3.4E-15 78.8 5.1 55 2-57 93-153 (177)
342 2cqh_A IGF-II mRNA-binding pro 99.1 2.8E-11 9.6E-16 72.9 2.0 64 2-67 13-77 (93)
343 2diu_A KIAA0430 protein; struc 99.1 2.2E-10 7.5E-15 68.6 5.2 52 2-57 14-70 (96)
344 2j8a_A Histone-lysine N-methyl 99.1 1.1E-10 3.7E-15 73.8 3.8 65 2-68 7-91 (136)
345 2dnq_A RNA-binding protein 4B; 99.1 2.8E-10 9.6E-15 68.1 5.5 53 2-56 13-65 (90)
346 1nu4_A U1A RNA binding domain; 99.1 9.2E-11 3.1E-15 71.1 3.4 64 2-67 13-83 (97)
347 3zzy_A Polypyrimidine tract-bi 99.1 3.3E-10 1.1E-14 72.3 6.0 61 2-67 33-100 (130)
348 1x4g_A Nucleolysin TIAR; struc 99.1 9.3E-11 3.2E-15 72.7 3.3 55 2-56 30-84 (109)
349 2l9w_A U4/U6 snRNA-associated- 99.0 7.6E-09 2.6E-13 63.0 11.4 80 53-132 12-96 (117)
350 3egn_A RNA-binding protein 40; 99.0 1.2E-10 4.1E-15 75.6 3.8 64 2-67 50-124 (143)
351 2cpd_A Apobec-1 stimulating pr 99.0 2E-10 6.9E-15 69.9 4.0 62 2-67 20-83 (99)
352 2jvo_A Nucleolar protein 3; nu 99.0 5E-10 1.7E-14 69.4 5.8 62 2-67 36-97 (108)
353 2xnq_A Nuclear polyadenylated 99.0 2.7E-10 9.4E-15 69.2 4.5 53 2-56 27-80 (97)
354 3pgw_S U1-70K; protein-RNA com 99.0 3.4E-10 1.2E-14 86.1 5.7 64 2-67 107-176 (437)
355 2dgu_A Heterogeneous nuclear r 99.0 2.1E-10 7.3E-15 70.3 3.3 53 2-56 16-68 (103)
356 2dnp_A RNA-binding protein 14; 99.0 2.7E-10 9.3E-15 68.1 3.4 53 2-56 14-66 (90)
357 1wf1_A RNA-binding protein RAL 99.0 1.9E-10 6.4E-15 71.4 2.5 53 2-56 32-85 (110)
358 2kvi_A Nuclear polyadenylated 99.0 1.1E-09 3.7E-14 66.3 5.9 55 2-58 15-70 (96)
359 3d2w_A TAR DNA-binding protein 99.0 4.3E-10 1.5E-14 67.2 3.8 47 2-48 16-63 (89)
360 2i2y_A Fusion protein consists 99.0 4.6E-10 1.6E-14 73.4 4.3 64 2-67 78-142 (150)
361 3dxb_A Thioredoxin N-terminall 99.0 1.7E-09 5.7E-14 75.2 7.3 96 38-134 101-211 (222)
362 2dgt_A RNA-binding protein 30; 99.0 3.5E-10 1.2E-14 67.9 3.3 53 2-56 15-67 (92)
363 2e5g_A U6 snRNA-specific termi 98.9 1.8E-09 6.1E-14 65.1 6.0 50 2-55 13-66 (94)
364 2voo_A Lupus LA protein; RNA-b 98.9 1.4E-09 4.7E-14 74.2 5.7 63 2-68 114-182 (193)
365 1x5p_A Negative elongation fac 98.9 9.6E-10 3.3E-14 66.6 4.0 62 2-67 20-81 (97)
366 3tht_A Alkylated DNA repair pr 98.9 1.9E-09 6.4E-14 79.4 4.4 54 2-55 23-78 (345)
367 2pe8_A Splicing factor 45; RRM 98.9 9.5E-09 3.2E-13 63.3 6.9 58 9-68 25-89 (105)
368 1wf0_A TDP-43, TAR DNA-binding 98.8 1.4E-09 4.7E-14 64.7 2.4 48 2-49 10-58 (88)
369 2e44_A Insulin-like growth fac 98.8 2.5E-09 8.5E-14 64.6 3.6 65 2-68 20-87 (96)
370 2bz2_A Negative elongation fac 98.8 3E-09 1E-13 67.2 2.9 62 2-67 44-105 (121)
371 1jmt_A Splicing factor U2AF 35 98.8 2.1E-09 7E-14 66.1 1.7 52 4-56 22-91 (104)
372 2d9o_A DNAJ (HSP40) homolog, s 98.7 2.7E-08 9.2E-13 60.6 5.3 49 7-55 27-76 (100)
373 3u1l_A PRE-mRNA-splicing facto 98.7 5.5E-09 1.9E-13 73.3 2.3 57 2-58 139-204 (240)
374 3v4m_A Splicing factor U2AF 65 98.4 2.1E-07 7.2E-12 57.1 4.2 55 11-67 29-91 (105)
375 2dit_A HIV TAT specific factor 98.4 5.2E-07 1.8E-11 55.9 5.7 51 11-67 40-96 (112)
376 3ue2_A Poly(U)-binding-splicin 98.4 3.4E-07 1.2E-11 57.4 4.2 56 10-67 38-103 (118)
377 1wey_A Calcipressin 1; structu 98.4 3E-06 1E-10 51.3 7.8 77 60-136 3-84 (104)
378 1owx_A Lupus LA protein, SS-B, 98.2 3E-06 1E-10 53.2 5.9 67 2-68 23-91 (121)
379 2dhx_A Poly (ADP-ribose) polym 98.1 0.0001 3.5E-09 44.5 10.9 76 59-137 5-85 (104)
380 3s6e_A RNA-binding protein 39; 98.1 3.2E-06 1.1E-10 52.6 3.9 66 11-84 31-100 (114)
381 1whv_A Poly(A)-specific ribonu 97.9 7E-05 2.4E-09 44.7 6.7 64 54-119 7-70 (100)
382 1wwh_A Nucleoporin 35, nucleop 97.8 0.00017 5.6E-09 44.8 7.9 74 59-134 21-95 (119)
383 3dxb_A Thioredoxin N-terminall 97.5 0.00013 4.6E-09 50.2 5.2 50 8-57 140-199 (222)
384 2dhx_A Poly (ADP-ribose) polym 97.5 0.0002 6.7E-09 43.2 4.8 70 1-75 12-99 (104)
385 3ctr_A Poly(A)-specific ribonu 97.5 0.00032 1.1E-08 41.9 5.6 53 64-119 8-60 (101)
386 1uw4_A UPF3X; nonsense mediate 97.4 0.00099 3.4E-08 39.5 7.4 72 63-134 2-86 (91)
387 3p3d_A Nucleoporin 53; structu 97.1 0.00076 2.6E-08 42.5 4.8 72 62-135 7-98 (132)
388 3pq1_A Poly(A) RNA polymerase; 96.7 0.0012 4.2E-08 50.4 3.8 55 61-116 52-107 (464)
389 2l08_A Regulator of nonsense t 96.5 0.01 3.6E-07 35.4 6.0 74 61-134 8-94 (97)
390 2l9w_A U4/U6 snRNA-associated- 96.2 0.0015 5.3E-08 39.8 1.4 61 2-68 26-95 (117)
391 1uw4_A UPF3X; nonsense mediate 96.2 0.0099 3.4E-07 35.1 4.6 54 2-55 6-67 (91)
392 1whv_A Poly(A)-specific ribonu 96.0 0.025 8.4E-07 33.7 5.8 43 4-53 22-69 (100)
393 2dnr_A Synaptojanin-1; RRM dom 95.6 0.0067 2.3E-07 35.8 2.3 52 12-68 30-81 (91)
394 2l08_A Regulator of nonsense t 95.5 0.019 6.5E-07 34.2 3.9 54 2-55 14-75 (97)
395 1ufw_A Synaptojanin 2; RNP dom 95.5 0.01 3.5E-07 35.2 2.8 39 12-56 39-80 (95)
396 3ctr_A Poly(A)-specific ribonu 95.0 0.033 1.1E-06 33.2 3.9 46 4-54 12-60 (101)
397 3d45_A Poly(A)-specific ribonu 93.3 0.46 1.6E-05 36.8 8.3 56 61-119 439-494 (507)
398 1wwh_A Nucleoporin 35, nucleop 86.8 0.51 1.7E-05 29.1 2.7 48 4-52 31-78 (119)
399 2g0c_A ATP-dependent RNA helic 81.5 4.9 0.00017 22.1 6.0 68 64-134 2-75 (76)
400 1wey_A Calcipressin 1; structu 77.0 0.48 1.6E-05 28.5 -0.0 65 3-69 11-82 (104)
401 3d45_A Poly(A)-specific ribonu 64.7 22 0.00075 27.5 6.7 46 5-55 447-495 (507)
402 2cu1_A Mitogen-activated prote 63.4 21 0.00071 21.2 6.2 67 69-138 23-90 (103)
403 3pq1_A Poly(A) RNA polymerase; 63.3 4.4 0.00015 31.0 2.6 44 5-51 60-107 (464)
404 4eyt_A Telomerase associated p 62.4 20 0.0007 20.8 8.0 57 61-119 11-67 (129)
405 3lpe_A Putative transcription 50.7 34 0.0012 19.7 5.5 44 31-84 48-91 (92)
406 2e5p_A Protein PHF1, PHD finge 43.0 14 0.00049 20.0 1.8 20 87-108 28-47 (68)
407 1nz8_A Transcription antitermi 41.4 56 0.0019 19.5 5.7 51 32-87 61-116 (119)
408 3fry_A Probable copper-exporti 40.8 40 0.0014 17.6 5.9 55 62-117 6-60 (73)
409 2m0o_A PHD finger protein 1; t 38.2 18 0.00063 20.2 1.8 20 87-108 45-64 (79)
410 2eqj_A Metal-response element- 35.6 22 0.00074 19.3 1.8 14 95-108 38-51 (66)
411 4e8u_A Putative uncharacterize 34.1 98 0.0034 20.2 5.6 45 63-107 13-71 (172)
412 2f06_A Conserved hypothetical 32.4 87 0.003 19.1 6.4 80 40-123 52-135 (144)
413 3ts2_A Protein LIN-28 homolog 30.2 9.3 0.00032 24.3 -0.3 27 78-106 3-29 (148)
414 4a4j_A Pacszia, cation-transpo 28.1 65 0.0022 16.3 5.4 44 64-107 5-48 (69)
415 2e5q_A PHD finger protein 19; 27.7 11 0.00039 20.1 -0.2 12 97-108 34-45 (63)
416 4hcz_A PHD finger protein 1; p 26.6 39 0.0013 17.8 1.8 14 95-108 28-41 (58)
417 3h7h_B Transcription elongatio 26.3 81 0.0028 18.7 3.4 33 89-121 41-74 (106)
418 3fut_A Dimethyladenosine trans 22.0 1E+02 0.0034 21.5 3.8 30 62-92 110-139 (271)
419 2gu3_A YPMB protein; APC1927, 21.0 83 0.0028 19.5 2.8 42 2-43 68-128 (136)
420 1uta_A FTSN, MSGA, cell divisi 20.3 1E+02 0.0035 16.8 2.9 15 39-53 16-30 (81)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.6e-31 Score=185.99 Aligned_cols=135 Identities=34% Similarity=0.488 Sum_probs=121.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC------------C-----CC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------S-----DG 58 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------~-----~~ 58 (155)
|.|||.++||++|+++|+ ++.++++..++.++|||||+|.+.++|.+|+..+++ . ..
T Consensus 20 VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~ 99 (213)
T 4f02_A 20 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 99 (213)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH
T ss_pred EeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc
Confidence 679999999999999999 567888888899999999999999999999999888 1 11
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
.....+|||+|||..+++++|+++|++||.|..+++.. ++|+|||+|.+.++|++|++.|||..++|+.|+|.|++
T Consensus 100 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 100 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 12457899999999999999999999999999999875 36899999999999999999999999999999999997
Q ss_pred CC
Q 038175 135 NP 136 (155)
Q Consensus 135 ~~ 136 (155)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 63
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-30 Score=171.46 Aligned_cols=132 Identities=30% Similarity=0.555 Sum_probs=117.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-----------------CCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDG 58 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-----------------~~~ 58 (155)
|.|||.++|+++|+++|+ ++.++.+. .+.++|||||+|.+.++|.+|+..+++ ...
T Consensus 5 V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~ 83 (166)
T 3md3_A 5 VGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSS 83 (166)
T ss_dssp EEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCC
T ss_pred ECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCC
Confidence 679999999999999999 44555554 467899999999999999999999888 334
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
.....+|+|+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|+|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 567889999999999999999999999999999988743 68999999999999999999999999999999999
Q ss_pred cc
Q 038175 133 GH 134 (155)
Q Consensus 133 ~~ 134 (155)
++
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 3
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=2.6e-30 Score=179.66 Aligned_cols=139 Identities=22% Similarity=0.383 Sum_probs=120.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD------------------ 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~------------------ 57 (155)
|.|||.++|+++|+++|+ ++.++.+..++.++|||||+|.+.++|.+|+..+++..
T Consensus 33 V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~ 112 (216)
T 2qfj_A 33 VGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQ 112 (216)
T ss_dssp EECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGH
T ss_pred EECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccc
Confidence 679999999999999999 44555565678899999999999999999999988810
Q ss_pred --------CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCee
Q 038175 58 --------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 58 --------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
.....++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+
T Consensus 113 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~ 192 (216)
T 2qfj_A 113 PIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL 192 (216)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred hhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEe
Confidence 1245589999999999999999999999999999998754 68999999999999999999999999
Q ss_pred CCeEEEEEeccCCCCCC
Q 038175 124 GKQTVRLSWGHNPGNKQ 140 (155)
Q Consensus 124 ~g~~l~v~~~~~~~~~~ 140 (155)
+|+.|+|.|+.++....
T Consensus 193 ~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 193 GGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp SSSBCEEEECSSCSSTT
T ss_pred CCcEEEEEEecCCCCCC
Confidence 99999999998764333
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=6.3e-30 Score=171.24 Aligned_cols=132 Identities=25% Similarity=0.460 Sum_probs=118.3
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC---------------CCCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKS 60 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~---------------~~~~~ 60 (155)
|.|||.++|+++|+++|+ ++.++.+..++.++|||||+|.+.++|.+|+..+++ .....
T Consensus 8 v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 87 (168)
T 1b7f_A 8 VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESI 87 (168)
T ss_dssp EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTT
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccC
Confidence 679999999999999999 445555666788899999999999999999999888 33456
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEe
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSW 132 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~ 132 (155)
...+|+|+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|..|+..|+|..+.| ++|+|+|
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 7889999999999999999999999999999988754 4899999999999999999999999977 9999998
Q ss_pred c
Q 038175 133 G 133 (155)
Q Consensus 133 ~ 133 (155)
+
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 6
No 5
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=6e-30 Score=172.30 Aligned_cols=133 Identities=23% Similarity=0.419 Sum_probs=118.4
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCC--CCcceEEEEeCCHHHHHHHHHHhcC------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTG--HTKGYGFVRFGDENERSRAMIEMNG------------------ 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~~~~------------------ 55 (155)
|.|||.++|+++|+++|+ ++.++.+..++ .++|||||+|.+.++|++|+..+++
T Consensus 8 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~ 87 (175)
T 3nmr_A 8 VGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADS 87 (175)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGG
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccc
Confidence 679999999999999999 56777777665 7899999999999999999999887
Q ss_pred -CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeC---Ce
Q 038175 56 -SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIG---KQ 126 (155)
Q Consensus 56 -~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~---g~ 126 (155)
.......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+. ++
T Consensus 88 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 167 (175)
T 3nmr_A 88 EKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSS 167 (175)
T ss_dssp GCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSS
T ss_pred cccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCC
Confidence 223347789999999999999999999999999999998764 689999999999999999999998775 49
Q ss_pred EEEEEecc
Q 038175 127 TVRLSWGH 134 (155)
Q Consensus 127 ~l~v~~~~ 134 (155)
+|+|+|+.
T Consensus 168 ~l~V~~ad 175 (175)
T 3nmr_A 168 PMVVKFAD 175 (175)
T ss_dssp CCEEEECC
T ss_pred CeEEEecC
Confidence 99999973
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1e-29 Score=174.18 Aligned_cols=137 Identities=20% Similarity=0.366 Sum_probs=115.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|.|||.++|+++|+++|+ ++.++.+..++.++|||||+|.+.++|.+|+.. ++
T Consensus 18 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~ 96 (196)
T 1l3k_A 18 IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQ 96 (196)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCccccc
Confidence 679999999999999999 567777877889999999999999999999976 33
Q ss_pred -CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEE
Q 038175 56 -SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128 (155)
Q Consensus 56 -~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l 128 (155)
+......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+.. ++..+.|+.|
T Consensus 97 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i 175 (196)
T 1l3k_A 97 RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNC 175 (196)
T ss_dssp ------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEEC
T ss_pred ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEE
Confidence 122345689999999999999999999999999999988753 68999999999999999986 7999999999
Q ss_pred EEEeccCCCCCC
Q 038175 129 RLSWGHNPGNKQ 140 (155)
Q Consensus 129 ~v~~~~~~~~~~ 140 (155)
.|+|+.++....
T Consensus 176 ~v~~a~~k~~~~ 187 (196)
T 1l3k_A 176 EVRKALSKQEMA 187 (196)
T ss_dssp EEEECC------
T ss_pred EEEecCChhHhc
Confidence 999998765443
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.2e-29 Score=169.57 Aligned_cols=132 Identities=30% Similarity=0.577 Sum_probs=118.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC---------------CCCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------------SDGKS 60 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~---------------~~~~~ 60 (155)
|.|||.++|+++|+++|+ ++.++.+..++.++|||||+|.+.++|.+|+..+++ .....
T Consensus 7 v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 86 (167)
T 1fxl_A 7 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 86 (167)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGG
T ss_pred EcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccC
Confidence 679999999999999999 566677777889999999999999999999999888 23345
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeE--EEEEe
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQT--VRLSW 132 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~--l~v~~ 132 (155)
...+|+|+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|+|..+.|+. |+|+|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 6789999999999999999999999999999988753 589999999999999999999999999965 88888
Q ss_pred c
Q 038175 133 G 133 (155)
Q Consensus 133 ~ 133 (155)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=8.8e-30 Score=171.24 Aligned_cols=131 Identities=19% Similarity=0.400 Sum_probs=116.0
Q ss_pred cccCCCCCCHHHHHhhcccc----e-------EEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC---------------
Q 038175 2 GYCQVSDITNSILQETFSRA----K-------VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~----~-------~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~--------------- 55 (155)
|.|||.++|+++|+++|+.+ . .+.+...+.++|||||+|.+.++|.+|+ .+++
T Consensus 9 V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 9 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (172)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSS
T ss_pred EcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcc
Confidence 67999999999999999954 3 3444445678999999999999999999 8888
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
........+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 88 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 167 (172)
T 2g4b_A 88 YQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 167 (172)
T ss_dssp CCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEE
Confidence 223345799999999999999999999999999999998754 58999999999999999999999999999999
Q ss_pred EEec
Q 038175 130 LSWG 133 (155)
Q Consensus 130 v~~~ 133 (155)
|+|+
T Consensus 168 V~~A 171 (172)
T 2g4b_A 168 VQRA 171 (172)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9997
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=2.5e-29 Score=172.55 Aligned_cols=136 Identities=18% Similarity=0.384 Sum_probs=118.9
Q ss_pred cccCCCCCCHHHHHhhcccc----e-------EEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC------------CC-
Q 038175 2 GYCQVSDITNSILQETFSRA----K-------VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------SD- 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~----~-------~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------~~- 57 (155)
|.|||.++|+++|+++|+.+ . .+.+...+.++|||||+|.+.++|++|+ .+++ ..
T Consensus 9 V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~ 87 (198)
T 2yh0_A 9 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (198)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCC
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCC
Confidence 67999999999999999944 2 3444455778999999999999999999 8888 00
Q ss_pred ----------------------CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHH
Q 038175 58 ----------------------GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRK 109 (155)
Q Consensus 58 ----------------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~ 109 (155)
.....++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~ 167 (198)
T 2yh0_A 88 YQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 167 (198)
T ss_dssp CCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSS
T ss_pred CCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHH
Confidence 1146799999999999999999999999999999998754 689999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 038175 110 DAEVALQKLQGTAIGKQTVRLSWGHNPGN 138 (155)
Q Consensus 110 ~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 138 (155)
+|..|+..|+|..++|+.|+|+|++++.+
T Consensus 168 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 168 VTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999987644
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=3.9e-30 Score=172.20 Aligned_cols=134 Identities=23% Similarity=0.452 Sum_probs=116.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHH---hcCC----------CCCCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIE---MNGS----------DGKSNN 62 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~---~~~~----------~~~~~~ 62 (155)
|.|||.++|+++|+++|+ ++.++.+..++.++|||||+|.+.++|.+|+.. ++|. ......
T Consensus 8 v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~ 87 (167)
T 2cjk_A 8 IGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKT 87 (167)
T ss_dssp ECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHC
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCC
Confidence 689999999999999999 344555656788999999999999999999987 5551 112346
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
.+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++ +++..++|+.|+|.|+.++
T Consensus 88 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 88 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 79999999999999999999999999999998753 5899999999999999998 8999999999999999764
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=5.7e-29 Score=167.85 Aligned_cols=133 Identities=25% Similarity=0.393 Sum_probs=115.2
Q ss_pred cccCCCCCCHHHHHhhcccc-----eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-----------------CCCC
Q 038175 2 GYCQVSDITNSILQETFSRA-----KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-----------------SDGK 59 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~-----~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-----------------~~~~ 59 (155)
|.|||.++|+++|+++|..+ .++.+..++.++|||||+|.+.++|.+|+ ++++ ....
T Consensus 18 V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~~~ 96 (175)
T 1fje_B 18 IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKV 96 (175)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSCSTT
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCcccccc
Confidence 68999999999999999821 24445556789999999999999999999 5887 2234
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEee--CCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP--VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~--~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
...++|||+|||..+++++|+++|++||.|..+ .. .++|+|||+|.+.++|.+|+..|+|..++|+.|+|+|++++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 467899999999999999999999999998877 21 24799999999999999999999999999999999999764
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=3.2e-28 Score=175.77 Aligned_cols=137 Identities=20% Similarity=0.308 Sum_probs=123.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC------------------CC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG------------------SD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~------------------~~ 57 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|.+|+..+++ ..
T Consensus 100 v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~ 179 (284)
T 3smz_A 100 VANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP 179 (284)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT
T ss_pred EcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc
Confidence 679999999999999999 456677777889999999999999999999999988 33
Q ss_pred CCCCCcEEEEcCCCCCC-CHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNV-SDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.....++|||+|||..+ ++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|+
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 44678899999999995 99999999999999999998764 7899999999999999999999999999999999
Q ss_pred eccCCCC
Q 038175 132 WGHNPGN 138 (155)
Q Consensus 132 ~~~~~~~ 138 (155)
|+++...
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9977544
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=5.5e-27 Score=169.13 Aligned_cols=133 Identities=25% Similarity=0.361 Sum_probs=115.4
Q ss_pred cccCCCCCCHHHHH----hhcccc---eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC----------------C--
Q 038175 2 GYCQVSDITNSILQ----ETFSRA---KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------S-- 56 (155)
Q Consensus 2 v~nlp~~~te~~l~----~~f~~~---~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~----------------~-- 56 (155)
|.|||.++|+++|+ ++|+.+ .-+....++.++|||||+|.+.++|.+|+..+++ .
T Consensus 14 V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 93 (282)
T 3pgw_A 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 93 (282)
T ss_pred EeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcch
Confidence 68999999999976 888833 2222223678999999999999999999999888 0
Q ss_pred --------------------------------------------------------------------------------
Q 038175 57 -------------------------------------------------------------------------------- 56 (155)
Q Consensus 57 -------------------------------------------------------------------------------- 56 (155)
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~ 173 (282)
T 3pgw_A 94 IAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPP 173 (282)
T ss_pred hhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred ----------------------------CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCC-cEEEEEecC
Q 038175 57 ----------------------------DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK-GCGFVQFAN 107 (155)
Q Consensus 57 ----------------------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-g~~~v~f~~ 107 (155)
......++|||+|||..+++++|+++|++||.|..+++..++ |+|||+|.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~ 253 (282)
T 3pgw_A 174 GLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDN 253 (282)
T ss_pred CCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCC
Confidence 112245789999999999999999999999999999998765 999999999
Q ss_pred HHHHHHHHHHhcCCeeC-CeEEEEEecc
Q 038175 108 RKDAEVALQKLQGTAIG-KQTVRLSWGH 134 (155)
Q Consensus 108 ~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 134 (155)
.++|.+|+..|+|..+. |+.|+|+|++
T Consensus 254 ~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 254 EVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999999 9999999986
No 14
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=3.2e-27 Score=165.96 Aligned_cols=135 Identities=22% Similarity=0.267 Sum_probs=113.6
Q ss_pred cccCCC-CCCHHHHHhhcccceEEEcC-CCCCCcceEEEEeCCHHHHHHHHHHhcC-------------C-C-----C--
Q 038175 2 GYCQVS-DITNSILQETFSRAKVTIDS-NTGHTKGYGFVRFGDENERSRAMIEMNG-------------S-D-----G-- 58 (155)
Q Consensus 2 v~nlp~-~~te~~l~~~f~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------~-~-----~-- 58 (155)
|.|||. ++|+++|+++|+.++.+... .....+|||||+|.+.++|++|+..+++ . . .
T Consensus 39 V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 118 (229)
T 2adc_A 39 VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREG 118 (229)
T ss_dssp EESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSS
T ss_pred EeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCcccc
Confidence 679999 99999999999933212111 0112278999999999999999998887 0 0 0
Q ss_pred -----------------------------CCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEee-CCCcEEEEEecC
Q 038175 59 -----------------------------KSNNATIFVGALDSNVSDKDLRELFSHFG-EILSVKIP-VGKGCGFVQFAN 107 (155)
Q Consensus 59 -----------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~-~~~g~~~v~f~~ 107 (155)
....++|||+|||..+++++|+++|++|| .|..+.+. .++++|||+|.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~ 198 (229)
T 2adc_A 119 QEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGS 198 (229)
T ss_dssp SSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESS
T ss_pred ccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECC
Confidence 12368899999999999999999999999 99999984 478999999999
Q ss_pred HHHHHHHHHHhcCCeeC-CeEEEEEeccCC
Q 038175 108 RKDAEVALQKLQGTAIG-KQTVRLSWGHNP 136 (155)
Q Consensus 108 ~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 136 (155)
.++|.+|+..|+|..+. |+.|+|+|++++
T Consensus 199 ~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 199 VEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999999 999999999864
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=8.4e-27 Score=168.31 Aligned_cols=135 Identities=20% Similarity=0.315 Sum_probs=119.3
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC---------CCCCCCCcEEEEcCCCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------SDGKSNNATIFVGALDS 72 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~---------~~~~~~~~~l~v~~l~~ 72 (155)
|.|||.++|+++|+++|+.++ +.....+.++|||||+|.+.++|.+|+..+++ ........+|||+|||.
T Consensus 27 V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~ 105 (284)
T 3smz_A 27 IRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPP 105 (284)
T ss_dssp EECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCT
T ss_pred EeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCC
Confidence 679999999999999999776 44333478899999999999999999999988 12245678999999999
Q ss_pred CCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 038175 73 NVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137 (155)
Q Consensus 73 ~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 137 (155)
.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|..|+..|+|..+.|+.|.|.|+.+..
T Consensus 106 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 106 SLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred cCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 9999999999999999999987642 5899999999999999999999999999999999997643
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=1.4e-26 Score=159.07 Aligned_cols=135 Identities=22% Similarity=0.259 Sum_probs=114.1
Q ss_pred cccCCC-CCCHHHHHhhcccceEEEcC-CCCCCcceEEEEeCCHHHHHHHHHHhcC-------------C-C--------
Q 038175 2 GYCQVS-DITNSILQETFSRAKVTIDS-NTGHTKGYGFVRFGDENERSRAMIEMNG-------------S-D-------- 57 (155)
Q Consensus 2 v~nlp~-~~te~~l~~~f~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------~-~-------- 57 (155)
|.|||. ++|+++|+++|+.++.+... .....+|||||+|.+.++|.+|+..+++ . .
T Consensus 8 v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~ 87 (198)
T 1qm9_A 8 VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREG 87 (198)
T ss_dssp EECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSS
T ss_pred EeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcC
Confidence 679999 99999999999943222211 1112378999999999999999998888 0 0
Q ss_pred ----------------------------CCCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeeC-CCcEEEEEecC
Q 038175 58 ----------------------------GKSNNATIFVGALDSNVSDKDLRELFSHFG-EILSVKIPV-GKGCGFVQFAN 107 (155)
Q Consensus 58 ----------------------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~-~~g~~~v~f~~ 107 (155)
...+..+|||+|||..+++++|+++|++|| .|..+.+.. ++|+|||+|.+
T Consensus 88 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~ 167 (198)
T 1qm9_A 88 QEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGS 167 (198)
T ss_dssp SSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSS
T ss_pred CccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCC
Confidence 013478899999999999999999999999 999999854 78999999999
Q ss_pred HHHHHHHHHHhcCCeeC-CeEEEEEeccCC
Q 038175 108 RKDAEVALQKLQGTAIG-KQTVRLSWGHNP 136 (155)
Q Consensus 108 ~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 136 (155)
.++|..|+..|+|..++ |+.|+|.|++++
T Consensus 168 ~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 168 VEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999 999999999764
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=1.4e-26 Score=165.58 Aligned_cols=135 Identities=25% Similarity=0.326 Sum_probs=113.9
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC---------CCCCCCCcEEEEcCCCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG---------SDGKSNNATIFVGALDS 72 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~---------~~~~~~~~~l~v~~l~~ 72 (155)
|.|||.++|+++|+++|+.++.+.......++|||||+|.+.++|.+|+..+++ ........+|||+|||.
T Consensus 27 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~ 106 (261)
T 3sde_A 27 VGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSP 106 (261)
T ss_dssp EESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCT
T ss_pred EECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCC
Confidence 679999999999999999443333322345689999999999999999999988 12234578999999999
Q ss_pred CCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhc-CCeeC---CeEEEEEeccCC
Q 038175 73 NVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQ-GTAIG---KQTVRLSWGHNP 136 (155)
Q Consensus 73 ~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~-~~~~~---g~~l~v~~~~~~ 136 (155)
.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|..|+..|+ +..+. +++|.|.++.+.
T Consensus 107 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 107 VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 9999999999999999999988753 7899999999999999999994 55554 999999998764
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=4.6e-26 Score=165.01 Aligned_cols=133 Identities=19% Similarity=0.397 Sum_probs=112.1
Q ss_pred cccCCCCCCHHHHHhhcccce-------EEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------C----
Q 038175 2 GYCQVSDITNSILQETFSRAK-------VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------------S---- 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~-------~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~--------------~---- 56 (155)
|.|||.++|+++|+++|..++ ++.+. .+.++|||||+|.+.++|.+|+..+++ +
T Consensus 122 v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 122 MTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp EECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred EECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 679999999999999999332 22232 256899999999999999999999988 0
Q ss_pred ----CCCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeeCC-------CcEEEEEecCHHHHHHHHHHhcCCeeC
Q 038175 57 ----DGKSNNATIFVGALDSN-VSDKDLRELFSHFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIG 124 (155)
Q Consensus 57 ----~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~-------~g~~~v~f~~~~~a~~a~~~l~~~~~~ 124 (155)
.......+|||+|||.. +++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+ .|+|..++
T Consensus 201 ~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~ 279 (292)
T 2ghp_A 201 KRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG 279 (292)
T ss_dssp ------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEET
T ss_pred ccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC
Confidence 23456789999999999 999999999999999999998653 689999999999999999 99999999
Q ss_pred CeEEEEEeccCC
Q 038175 125 KQTVRLSWGHNP 136 (155)
Q Consensus 125 g~~l~v~~~~~~ 136 (155)
|+.|+|.|++++
T Consensus 280 g~~i~V~~a~~k 291 (292)
T 2ghp_A 280 NREISVSLADKK 291 (292)
T ss_dssp TEEEEEEECCCC
T ss_pred CcEEEEEEecCC
Confidence 999999999764
No 19
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=7.7e-26 Score=156.48 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=107.5
Q ss_pred cccCC-CCCCHHHHHhhcccceEEEcC-CCCCCcceEEEEeCCHHHHHHHHHHhcC-------------C--C--C----
Q 038175 2 GYCQV-SDITNSILQETFSRAKVTIDS-NTGHTKGYGFVRFGDENERSRAMIEMNG-------------S--D--G---- 58 (155)
Q Consensus 2 v~nlp-~~~te~~l~~~f~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------~--~--~---- 58 (155)
|.||| .++|+++|+++|+.++.+.+. ....++|||||+|.+.++|++|+..|+| . . +
T Consensus 9 V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~ 88 (205)
T 3tyt_A 9 VYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSY 88 (205)
T ss_dssp EECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCC
T ss_pred EeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCccc
Confidence 68999 899999999999933222211 1123579999999999999999999988 0 0 0
Q ss_pred -------------------------------CCCCcEEEEcCCCCCCCHHHHHHHhhccCCe--EEEEeeCC----CcEE
Q 038175 59 -------------------------------KSNNATIFVGALDSNVSDKDLRELFSHFGEI--LSVKIPVG----KGCG 101 (155)
Q Consensus 59 -------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v--~~~~~~~~----~g~~ 101 (155)
..+.++|||+|||..+++++|+++|++||.| ..+++..+ +|+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~g 168 (205)
T 3tyt_A 89 GLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSG 168 (205)
T ss_dssp BCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEE
T ss_pred ccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEE
Confidence 0124579999999999999999999999998 88888754 4899
Q ss_pred EEEecCHHHHHHHHHHhcCCeeCCe----EEEEEec
Q 038175 102 FVQFANRKDAEVALQKLQGTAIGKQ----TVRLSWG 133 (155)
Q Consensus 102 ~v~f~~~~~a~~a~~~l~~~~~~g~----~l~v~~~ 133 (155)
||+|.+.++|..|+..|||..+.|+ ++.|.|+
T Consensus 169 fV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 169 LLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9999999999999999999999876 5666654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=7.8e-26 Score=163.82 Aligned_cols=134 Identities=13% Similarity=0.231 Sum_probs=115.3
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------CCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG--------SDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~--------~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+ .+.++.+.. .++|||||+|.+.++|.+|+ ++++ .......++|||
T Consensus 46 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~l~v 122 (292)
T 2ghp_A 46 VKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHLTECTLWM 122 (292)
T ss_dssp EEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEECCSCEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEECCCCEEEE
Confidence 679999999999999999 455555542 35899999999999999999 4777 222346899999
Q ss_pred cCCCCCCCHHHHHHHhhccC-CeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 038175 68 GALDSNVSDKDLRELFSHFG-EILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138 (155)
Q Consensus 68 ~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 138 (155)
+|||..+++++|+++|++|| .|..+.+.. .+|+|||+|.+.++|..|+..|+|..+.|+.|.|.|+.+...
T Consensus 123 ~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 123 TNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp ECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred ECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 99999999999999999999 999999865 479999999999999999999999999999999999976543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=2.1e-24 Score=143.51 Aligned_cols=118 Identities=20% Similarity=0.350 Sum_probs=101.6
Q ss_pred ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC----------------------------CCCCCCCcEEEEcCCCC
Q 038175 21 AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG----------------------------SDGKSNNATIFVGALDS 72 (155)
Q Consensus 21 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~----------------------------~~~~~~~~~l~v~~l~~ 72 (155)
+.++.+.. .++|||||+|.+.++|++|+..+++ ........+|||+|||.
T Consensus 3 ~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 3 YKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT
T ss_pred EEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 34555543 6899999999999999999987653 22345679999999999
Q ss_pred CCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCC
Q 038175 73 NVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140 (155)
Q Consensus 73 ~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 140 (155)
.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+|.|+++...+.
T Consensus 81 ~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 81 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 9999999999999999999998753 6899999999999999999999999999999999998764443
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=2.7e-22 Score=132.30 Aligned_cols=107 Identities=23% Similarity=0.380 Sum_probs=97.4
Q ss_pred CCcceEEEEeCCHHHHHHHHHHh-cC------------------------------CCCCCCCcEEEEcCCCCCCCHHHH
Q 038175 31 HTKGYGFVRFGDENERSRAMIEM-NG------------------------------SDGKSNNATIFVGALDSNVSDKDL 79 (155)
Q Consensus 31 ~~~g~afv~f~~~~~a~~a~~~~-~~------------------------------~~~~~~~~~l~v~~l~~~~~~~~l 79 (155)
..+|+++++|.+.++|++|+..+ ++ .......++|||+|||..+++++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 56899999999999999999888 32 334567899999999999999999
Q ss_pred HHHhhccCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 038175 80 RELFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137 (155)
Q Consensus 80 ~~~f~~~g~v~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 137 (155)
+++|++||.|..+.+..+ +|+|||+|.+.++|..|+..|+|..+.|+.|+|+|++++.
T Consensus 91 ~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999876 8999999999999999999999999999999999997753
No 23
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=8.8e-21 Score=116.12 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=75.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCe--eCCeEEEEEe
Q 038175 55 GSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTA--IGKQTVRLSW 132 (155)
Q Consensus 55 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~ 132 (155)
.....+++++|||+|||..+++++|+++|++||.|..+.+.+++|+|||+|++.++|..|++.|++.. +.|++|.|.|
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 34566788999999999999999999999999999999999999999999999999999999999875 7899999999
Q ss_pred ccCCC
Q 038175 133 GHNPG 137 (155)
Q Consensus 133 ~~~~~ 137 (155)
++++.
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 97653
No 24
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.85 E-value=3.6e-20 Score=114.68 Aligned_cols=83 Identities=25% Similarity=0.502 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
......++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|+.|++.|++..+.|+.|+|.|++++
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 345677999999999999999999999999999999988 679999999999999999999999999999999999876
Q ss_pred CCCCC
Q 038175 137 GNKQW 141 (155)
Q Consensus 137 ~~~~~ 141 (155)
..+..
T Consensus 84 ~~~~~ 88 (103)
T 2dgu_A 84 DQKRK 88 (103)
T ss_dssp CCCCC
T ss_pred cccch
Confidence 55443
No 25
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=1.4e-21 Score=126.76 Aligned_cols=107 Identities=22% Similarity=0.369 Sum_probs=75.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhcC--------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC--
Q 038175 34 GYGFVRFGDENERSRAMIEMNG--------------SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-- 97 (155)
Q Consensus 34 g~afv~f~~~~~a~~a~~~~~~--------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-- 97 (155)
-++|++|++...+..||..+++ +......++|||+|||..+++++|+++|++||.|..+.+..+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp ------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 4789999999999999999877 455567789999999999999999999999999999998753
Q ss_pred ----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCC
Q 038175 98 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140 (155)
Q Consensus 98 ----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 140 (155)
+|+|||+|.+.++|++|+..|+|..+.|+.|+|+|+++.....
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 6899999999999999999999999999999999998754433
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=9.8e-21 Score=116.47 Aligned_cols=77 Identities=32% Similarity=0.557 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
....++|||+|||.++++++|+++|++||.|..+++.++ +|+|||+|.+.++|++|++.|+|..+.|+.|+|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999998753 58999999999999999999999999999999999
Q ss_pred ccC
Q 038175 133 GHN 135 (155)
Q Consensus 133 ~~~ 135 (155)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 27
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=116.62 Aligned_cols=83 Identities=14% Similarity=0.270 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC--CeeCCeEEEEEeccC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG--TAIGKQTVRLSWGHN 135 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~ 135 (155)
.....++|||+|||..+++++|+++|++||.|..+.+.+++|+|||+|++.++|+.|++.|++ ..+.|++|+|.|+++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 356789999999999999999999999999999999999999999999999999999998864 789999999999987
Q ss_pred CCCCC
Q 038175 136 PGNKQ 140 (155)
Q Consensus 136 ~~~~~ 140 (155)
+..+.
T Consensus 92 ~~~~~ 96 (105)
T 1sjq_A 92 KELKT 96 (105)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 65544
No 28
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5e-20 Score=113.52 Aligned_cols=84 Identities=14% Similarity=0.264 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc--CCeeCCeEEEEEecc
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ--GTAIGKQTVRLSWGH 134 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~ 134 (155)
....+.++|||+|||..+++++|+++|++||.|..+.+.+++|+|||+|.+.++|+.|++.|+ +..+.|++|+|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 345678899999999999999999999999999999999999999999999999999999774 678999999999998
Q ss_pred CCCCCC
Q 038175 135 NPGNKQ 140 (155)
Q Consensus 135 ~~~~~~ 140 (155)
++..+.
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 765554
No 29
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=8.1e-20 Score=114.06 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCC-----eEEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGK-----QTVRL 130 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g-----~~l~v 130 (155)
++......+|||+|||..+++++|+++|++||.|..+.+..+ ++|||+|.+.++|+.|++.|++..+.| +.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 344567899999999999999999999999999999999977 999999999999999999999999999 99999
Q ss_pred EeccCCCCCCC
Q 038175 131 SWGHNPGNKQW 141 (155)
Q Consensus 131 ~~~~~~~~~~~ 141 (155)
.+++++.....
T Consensus 88 ~~a~~~~~~~~ 98 (108)
T 1x4c_A 88 KVDGPRSPSYG 98 (108)
T ss_dssp EESSCCSCCCC
T ss_pred EeCCCCCCCCC
Confidence 99988655443
No 30
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.8e-20 Score=114.21 Aligned_cols=83 Identities=22% Similarity=0.219 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCC--eeCCeEEEEEeccC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT--AIGKQTVRLSWGHN 135 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~~~ 135 (155)
...+.++|||+|||..+++++|+++|++||.|..+.+.+++++|||+|.+.++|..|++.|++. .+.|+.|+|.|+++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 4567899999999999999999999999999999999999999999999999999999988764 58999999999987
Q ss_pred CCCCC
Q 038175 136 PGNKQ 140 (155)
Q Consensus 136 ~~~~~ 140 (155)
+..++
T Consensus 91 ~~~~~ 95 (104)
T 1wex_A 91 KRITR 95 (104)
T ss_dssp SSCCC
T ss_pred ccccC
Confidence 65544
No 31
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=115.10 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCC--eeCCeEEEEEecc
Q 038175 58 GKSNNATIFVGALDS-NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT--AIGKQTVRLSWGH 134 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~~ 134 (155)
...+.++|||+|||. .+++++|+++|++||.|..+.+.+++++|||+|++.++|..|++.|++. .+.|++|+|.|++
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 345788999999999 9999999999999999999999999999999999999999999999864 5999999999998
Q ss_pred CCC
Q 038175 135 NPG 137 (155)
Q Consensus 135 ~~~ 137 (155)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 643
No 32
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.84 E-value=2.9e-20 Score=110.36 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
.....|+|+||+..+++++|+++|.+||+|..+++..++|||||+|.+.++|..|++.||++++.|++|+|.++.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999984
No 33
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.9e-20 Score=112.34 Aligned_cols=83 Identities=24% Similarity=0.501 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
......++|||+|||..+++++|+++|++||.|..+.+.+++++|||+|.+.++|+.|++.|+|..+.|+.|+|+|++++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCC
Q 038175 137 GNK 139 (155)
Q Consensus 137 ~~~ 139 (155)
...
T Consensus 90 ~~~ 92 (99)
T 2cpj_A 90 ASL 92 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 443
No 34
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.5e-19 Score=110.81 Aligned_cols=85 Identities=33% Similarity=0.524 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|+..|++..+.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45677899999999999999999999999999999999864 78999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 038175 133 GHNPGNKQW 141 (155)
Q Consensus 133 ~~~~~~~~~ 141 (155)
++++..+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cq3_A 90 ATARVMTNS 98 (103)
T ss_dssp CCSSCCCCC
T ss_pred cccCCCCCC
Confidence 987655543
No 35
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=113.23 Aligned_cols=83 Identities=29% Similarity=0.611 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 137 (155)
.....++|||+|||..+++++|+++|++||.|..+.+..++++|||+|.+.++|+.|+..|+|..+.|+.|+|.|+++..
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCC
Q 038175 138 NKQ 140 (155)
Q Consensus 138 ~~~ 140 (155)
...
T Consensus 101 ~~~ 103 (109)
T 1x4g_A 101 DMT 103 (109)
T ss_dssp SSC
T ss_pred CCC
Confidence 433
No 36
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-19 Score=109.46 Aligned_cols=82 Identities=18% Similarity=0.382 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
......++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|+.|+..|++..+.|+.|+|+|++++
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 356778999999999999999999999999999999998 669999999999999999999999999999999999876
Q ss_pred CCCC
Q 038175 137 GNKQ 140 (155)
Q Consensus 137 ~~~~ 140 (155)
....
T Consensus 83 ~~~~ 86 (92)
T 2dgt_A 83 LRTA 86 (92)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 5444
No 37
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-19 Score=110.71 Aligned_cols=84 Identities=27% Similarity=0.529 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
......++|||+|||..+++++|+++|++||.|..+.+.. ++++|||+|.+.++|+.|+..|++..+.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999999999999999999999999999876 368999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 038175 133 GHNPGNKQ 140 (155)
Q Consensus 133 ~~~~~~~~ 140 (155)
++++..++
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 98765443
No 38
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-19 Score=108.86 Aligned_cols=82 Identities=24% Similarity=0.517 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
......++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|+.|+..|++..+.|+.|+|.|++++
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 346778999999999999999999999999999999998 799999999999999999999999999999999999876
Q ss_pred CCCC
Q 038175 137 GNKQ 140 (155)
Q Consensus 137 ~~~~ 140 (155)
....
T Consensus 81 ~~~~ 84 (90)
T 2dnq_A 81 SKAS 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 39
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.1e-20 Score=115.19 Aligned_cols=85 Identities=14% Similarity=0.260 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc--CCeeCCeEEEEEec
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ--GTAIGKQTVRLSWG 133 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~ 133 (155)
.....+.++|||+|||..+++++|+++|++||.|..+.+.+++|+|||+|++.++|++|++.|+ +..+.|++|+|.|+
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 3445678999999999999999999999999999999999999999999999999999999887 46899999999999
Q ss_pred cCCCCCC
Q 038175 134 HNPGNKQ 140 (155)
Q Consensus 134 ~~~~~~~ 140 (155)
+++..+.
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8765554
No 40
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-19 Score=109.54 Aligned_cols=83 Identities=25% Similarity=0.429 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.....++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|+..|+|..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999998753 5999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 038175 132 WGHNPGNKQ 140 (155)
Q Consensus 132 ~~~~~~~~~ 140 (155)
+++++....
T Consensus 84 ~a~~~~~~~ 92 (99)
T 1whw_A 84 PSTIKKEAS 92 (99)
T ss_dssp ECCCCSTTC
T ss_pred EcCCCcccc
Confidence 998765544
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-19 Score=111.34 Aligned_cols=84 Identities=31% Similarity=0.591 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-------CcEEEEEecCHHHHHHHHHHh-cCCeeCCeEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKL-QGTAIGKQTV 128 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-------~g~~~v~f~~~~~a~~a~~~l-~~~~~~g~~l 128 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..| ++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 45678899999999999999999999999999999999765 699999999999999999999 9999999999
Q ss_pred EEEeccCCCCCC
Q 038175 129 RLSWGHNPGNKQ 140 (155)
Q Consensus 129 ~v~~~~~~~~~~ 140 (155)
+|.|++++....
T Consensus 90 ~v~~a~~~~~~~ 101 (107)
T 2cph_A 90 VLEWADSEVTVQ 101 (107)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999998765444
No 42
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=111.56 Aligned_cols=85 Identities=27% Similarity=0.489 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.....++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|++.|++..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999998653 7899999999999999999999999999999999
Q ss_pred eccCCCCCCCC
Q 038175 132 WGHNPGNKQWR 142 (155)
Q Consensus 132 ~~~~~~~~~~~ 142 (155)
|++++..+...
T Consensus 88 ~a~~~~~~~~~ 98 (102)
T 2cqb_A 88 LAKPMRIKESG 98 (102)
T ss_dssp ECCCCCCCCCC
T ss_pred eCCCCCCCCCC
Confidence 99887665543
No 43
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-19 Score=113.11 Aligned_cols=82 Identities=22% Similarity=0.490 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
+....++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+|.|
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999864 59999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 038175 133 GHNPGNK 139 (155)
Q Consensus 133 ~~~~~~~ 139 (155)
++++...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9875443
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=111.77 Aligned_cols=85 Identities=27% Similarity=0.498 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
......++|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.++|+.|+..|++..+.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456889999999999999999999999999999999884 378999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 038175 133 GHNPGNKQW 141 (155)
Q Consensus 133 ~~~~~~~~~ 141 (155)
++++..+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 987665553
No 45
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=110.48 Aligned_cols=81 Identities=31% Similarity=0.570 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSV-KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
...++|||+|||..+++++|+++|++||.|..+ .+..+ +++|||+|.+.++|+.|+..|+|..+.|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 567899999999999999999999999999888 88753 68999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 038175 133 GHNPGNKQ 140 (155)
Q Consensus 133 ~~~~~~~~ 140 (155)
++++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98765544
No 46
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.4e-19 Score=108.57 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHF--GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
.....++|||+|||..+++++|+++|++| |.|..+.+. +++|||+|.+.++|+.|+..|+|..+.|+.|+|.|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 45678899999999999999999999999 999998887 78999999999999999999999999999999999987
Q ss_pred CCCC
Q 038175 136 PGNK 139 (155)
Q Consensus 136 ~~~~ 139 (155)
....
T Consensus 89 ~~~~ 92 (99)
T 2cpd_A 89 VDKD 92 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 47
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=5.5e-19 Score=111.37 Aligned_cols=84 Identities=32% Similarity=0.622 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 45668899999999999999999999999999999998754 589999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 038175 131 SWGHNPGNKQ 140 (155)
Q Consensus 131 ~~~~~~~~~~ 140 (155)
.|+++.....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9998765444
No 48
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-19 Score=109.08 Aligned_cols=82 Identities=27% Similarity=0.369 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLR----ELFSHFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......+|||+|||..+++++|+ ++|++||.|..+.+..+ +++|||+|.+.++|+.|++.|+|..+.|+.|+|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999 99999999999999865 789999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 038175 131 SWGHNPGNK 139 (155)
Q Consensus 131 ~~~~~~~~~ 139 (155)
.++++...+
T Consensus 85 ~~a~~~~~~ 93 (96)
T 2dgx_A 85 SLATGASGP 93 (96)
T ss_dssp EECCCSSCC
T ss_pred EEcCCCCCC
Confidence 999776443
No 49
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-19 Score=109.85 Aligned_cols=81 Identities=22% Similarity=0.448 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeC--CeEEEEEeccC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIG--KQTVRLSWGHN 135 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~~~ 135 (155)
.....++|||+|||..+++++|+++|++||.|..+.+..++++|||+|.+.++|+.|++.|++..+. |+.|+|.|+++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 3456789999999999999999999999999999999988999999999999999999999999999 99999999987
Q ss_pred CCC
Q 038175 136 PGN 138 (155)
Q Consensus 136 ~~~ 138 (155)
+..
T Consensus 93 ~~~ 95 (97)
T 1why_A 93 GPS 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 50
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.9e-19 Score=107.89 Aligned_cols=82 Identities=27% Similarity=0.500 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
....++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|+..|+|..+.|+.|+|+|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356789999999999999999999999999999998763 58999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 038175 133 GHNPGNKQ 140 (155)
Q Consensus 133 ~~~~~~~~ 140 (155)
++++....
T Consensus 82 a~~~~~~~ 89 (95)
T 2dnz_A 82 VTERLDGG 89 (95)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 97765443
No 51
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=108.19 Aligned_cols=79 Identities=33% Similarity=0.659 Sum_probs=74.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHh-cCCeeCCeEEEEEecc
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL-QGTAIGKQTVRLSWGH 134 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~ 134 (155)
+......++|||+|||..+++++|+++|++||.|..+.+.+++++|||+|.+.++|+.|+..| ++..+.|+.|+|+|++
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345677899999999999999999999999999999999998999999999999999999998 9999999999999975
No 52
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.1e-19 Score=110.16 Aligned_cols=83 Identities=23% Similarity=0.445 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
......++|||+|||..+++++|+++|++||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34567899999999999999999999999999999998753 689999999999999999999999999999999999
Q ss_pred cCCCCC
Q 038175 134 HNPGNK 139 (155)
Q Consensus 134 ~~~~~~ 139 (155)
++....
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 875443
No 53
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.3e-19 Score=108.58 Aligned_cols=84 Identities=25% Similarity=0.460 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|+.|++ |++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 3456789999999999999999999999999999999875 36899999999999999998 9999999999999
Q ss_pred EeccCCCCCCC
Q 038175 131 SWGHNPGNKQW 141 (155)
Q Consensus 131 ~~~~~~~~~~~ 141 (155)
.+++++..+..
T Consensus 84 ~~a~~~~~~~~ 94 (99)
T 2dgs_A 84 KRAEPRDSKSS 94 (99)
T ss_dssp EECCCCCCCCC
T ss_pred EECCCCcccCC
Confidence 99987655543
No 54
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-19 Score=109.81 Aligned_cols=81 Identities=25% Similarity=0.483 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC---------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~---------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
...++|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.++|+.|+..|+|..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5678999999999999999999999999999998873 2579999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 038175 131 SWGHNPGNKQ 140 (155)
Q Consensus 131 ~~~~~~~~~~ 140 (155)
+++++.....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998765444
No 55
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.3e-19 Score=107.20 Aligned_cols=81 Identities=23% Similarity=0.482 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
......++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|+.|+..|+|..+.|+.|+|.|+++.
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 346778999999999999999999999999999999998 569999999999999999999999999999999999876
Q ss_pred CCC
Q 038175 137 GNK 139 (155)
Q Consensus 137 ~~~ 139 (155)
..+
T Consensus 82 ~~~ 84 (90)
T 2dnp_A 82 QKK 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 56
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.6e-19 Score=120.74 Aligned_cols=85 Identities=25% Similarity=0.513 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
+......++|||+|||..+++++|+.+|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344566789999999999999999999999999999998754 68999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 038175 130 LSWGHNPGNKQ 140 (155)
Q Consensus 130 v~~~~~~~~~~ 140 (155)
|.|+.+...+.
T Consensus 146 V~~a~~~~~~~ 156 (165)
T 1rk8_A 146 VDWCFVKGPKR 156 (165)
T ss_dssp EEESEECC---
T ss_pred EEEecCCCCCC
Confidence 99998755444
No 57
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=110.67 Aligned_cols=84 Identities=25% Similarity=0.413 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|+..|+|..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 44567899999999999999999999999999999998753 689999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 038175 131 SWGHNPGNKQ 140 (155)
Q Consensus 131 ~~~~~~~~~~ 140 (155)
.|+++.....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dnm_A 88 QVARYGRRDL 97 (103)
T ss_dssp EECSSCCSCC
T ss_pred EECCcCCCCC
Confidence 9998765444
No 58
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=4e-19 Score=112.04 Aligned_cols=85 Identities=26% Similarity=0.496 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567789999999999999999999999999999988753 479999999999999999999999999999999
Q ss_pred EeccCCCCCCC
Q 038175 131 SWGHNPGNKQW 141 (155)
Q Consensus 131 ~~~~~~~~~~~ 141 (155)
.|++++..+..
T Consensus 100 ~~a~~~~~~~~ 110 (115)
T 2cpz_A 100 QLKRSKNDSKS 110 (115)
T ss_dssp ECCCCSCCCCC
T ss_pred EEcCCCCcCCC
Confidence 99987755543
No 59
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=2.3e-19 Score=113.22 Aligned_cols=78 Identities=33% Similarity=0.581 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
...+|||+|||..+++++|+++|++||.|..+++..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+|.++++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4578999999999999999999999999999998753 689999999999999999999999999999999999865
Q ss_pred CC
Q 038175 137 GN 138 (155)
Q Consensus 137 ~~ 138 (155)
..
T Consensus 84 ~~ 85 (115)
T 4f25_A 84 KE 85 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 60
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=1.8e-19 Score=115.40 Aligned_cols=85 Identities=21% Similarity=0.505 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
+......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|++.|+|..+.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 445667889999999999999999999999999999998754 78999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 038175 130 LSWGHNPGNKQ 140 (155)
Q Consensus 130 v~~~~~~~~~~ 140 (155)
|.|+++...+.
T Consensus 96 v~~a~~~~~~~ 106 (126)
T 3ex7_B 96 VDWCFVRGPPK 106 (126)
T ss_dssp EEESEESSSCC
T ss_pred EEEecCCCCCC
Confidence 99998655444
No 61
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=4.2e-19 Score=115.45 Aligned_cols=85 Identities=26% Similarity=0.432 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567799999999999999999999999999999988742 689999999999999999999999999999999
Q ss_pred EeccCCCCCCC
Q 038175 131 SWGHNPGNKQW 141 (155)
Q Consensus 131 ~~~~~~~~~~~ 141 (155)
.++++...+..
T Consensus 117 ~~a~~~~~~~~ 127 (139)
T 1u6f_A 117 ALAASGHQRPG 127 (139)
T ss_dssp EESSCCCCCCC
T ss_pred EECCCCCCCCC
Confidence 99987655543
No 62
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=110.44 Aligned_cols=78 Identities=28% Similarity=0.494 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCC
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 140 (155)
++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|+..|+|..+.|+.|+|+|++++..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 48999999999999999999999999999999886 9999999999999999999999999999999999998765443
No 63
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=113.74 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC--CeeCCeEEEEEeccC
Q 038175 59 KSNNATIFVGALDSN-VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG--TAIGKQTVRLSWGHN 135 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~ 135 (155)
....++|||+|||.+ +++++|+++|++||.|..+.+.+++|+|||+|.+.++|+.|++.|++ ..+.|+.|+|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 556889999999998 99999999999999999999999999999999999999999998864 569999999999987
Q ss_pred CCCCCC
Q 038175 136 PGNKQW 141 (155)
Q Consensus 136 ~~~~~~ 141 (155)
......
T Consensus 102 ~~~~~~ 107 (112)
T 1x4f_A 102 YKKLVS 107 (112)
T ss_dssp CSSSSC
T ss_pred cccccc
Confidence 655443
No 64
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=4.4e-19 Score=110.05 Aligned_cols=84 Identities=26% Similarity=0.515 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCC---eEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGK---QTVR 129 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g---~~l~ 129 (155)
.....++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|+..|+|..+.| +.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999998865 6899999999999999999999999988 9999
Q ss_pred EEeccCCCCCCC
Q 038175 130 LSWGHNPGNKQW 141 (155)
Q Consensus 130 v~~~~~~~~~~~ 141 (155)
|.|++++..++.
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999987665543
No 65
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4e-19 Score=109.70 Aligned_cols=84 Identities=26% Similarity=0.547 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|++.|++..+.|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999999999999998763 689999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 038175 131 SWGHNPGNKQ 140 (155)
Q Consensus 131 ~~~~~~~~~~ 140 (155)
.|++++...+
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x5s_A 87 DQAGKSSDNR 96 (102)
T ss_dssp EEEECCCCCC
T ss_pred EECCCCCCCC
Confidence 9998765544
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.2e-19 Score=109.35 Aligned_cols=84 Identities=27% Similarity=0.519 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 45667899999999999999999999999999999998753 589999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 038175 131 SWGHNPGNKQ 140 (155)
Q Consensus 131 ~~~~~~~~~~ 140 (155)
.|++++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 1x5u_A 90 NKASAHNKNL 99 (105)
T ss_dssp EETTTTSCCC
T ss_pred EECCCCCcCC
Confidence 9998765544
No 67
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=5e-19 Score=105.22 Aligned_cols=75 Identities=33% Similarity=0.647 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
.+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999988754 689999999999999999999999999999999999865
Q ss_pred C
Q 038175 137 G 137 (155)
Q Consensus 137 ~ 137 (155)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=5.6e-19 Score=106.09 Aligned_cols=79 Identities=30% Similarity=0.548 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
...++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|+.|+..|+|..+.|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999998853 478999999999999999999999999999999999
Q ss_pred ccCCCC
Q 038175 133 GHNPGN 138 (155)
Q Consensus 133 ~~~~~~ 138 (155)
+.++..
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987644
No 69
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=109.60 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC-CeeCCeEEEEEeccC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGE-ILSVKIPVGKGCGFVQFANRKDAEVALQKLQG-TAIGKQTVRLSWGHN 135 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~-~~~~g~~l~v~~~~~ 135 (155)
.....++|||+|||..+++++|+++|++||. |..+.+ .++++|||+|.+.++|+.|+..|+| ..+.|+.|+|.|+++
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 4567899999999999999999999999999 555544 4589999999999999999999999 999999999999987
Q ss_pred CCCCC
Q 038175 136 PGNKQ 140 (155)
Q Consensus 136 ~~~~~ 140 (155)
+..+.
T Consensus 83 ~~~~~ 87 (93)
T 2cqh_A 83 KKLRS 87 (93)
T ss_dssp CCCCC
T ss_pred ccccC
Confidence 65444
No 70
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.3e-19 Score=110.57 Aligned_cols=78 Identities=27% Similarity=0.537 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
....++|||+|||..+++++|+++|++||.|..+.+.+++|+|||+|.+.++|..|+..|+|..+.|+.|+|.|++++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999998763
No 71
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.3e-19 Score=109.32 Aligned_cols=84 Identities=30% Similarity=0.517 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34667899999999999999999999999999999998753 579999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 038175 131 SWGHNPGNKQ 140 (155)
Q Consensus 131 ~~~~~~~~~~ 140 (155)
.|++++..+.
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9998765544
No 72
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-18 Score=108.92 Aligned_cols=84 Identities=25% Similarity=0.352 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|+..|++..+.|+.|+|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567889999999999999999999999999999998764 6899999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 038175 132 WGHNPGNKQ 140 (155)
Q Consensus 132 ~~~~~~~~~ 140 (155)
+++....+.
T Consensus 90 ~a~~~~~~~ 98 (114)
T 2do0_A 90 MDERALPKG 98 (114)
T ss_dssp ECSCCCCCS
T ss_pred EcccCCCCC
Confidence 997654433
No 73
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=5.8e-19 Score=110.46 Aligned_cols=80 Identities=29% Similarity=0.578 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 038175 59 KSNNATIFVGALDSN-VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 137 (155)
....++|||+|||.. +++++|+++|++||.|..+.+. +++|||+|.+.++|+.|+..|++..+.|+.|+|.|++.+.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH--KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE--TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 445689999999999 9999999999999999999994 8999999999999999999999999999999999998654
Q ss_pred CCC
Q 038175 138 NKQ 140 (155)
Q Consensus 138 ~~~ 140 (155)
..+
T Consensus 102 ~~~ 104 (110)
T 1wf1_A 102 PDR 104 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 443
No 74
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2e-19 Score=109.95 Aligned_cols=81 Identities=26% Similarity=0.411 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 58 GKSNNATIFVGALDS-NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
.....++|||+|||. .+++++|+++|++||.|..+.+. +|+|||+|.+.++|+.|+..|+|..+.|+.|+|.|+++.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 356789999999998 99999999999999999999997 899999999999999999999999999999999999876
Q ss_pred CCCC
Q 038175 137 GNKQ 140 (155)
Q Consensus 137 ~~~~ 140 (155)
...+
T Consensus 84 ~~~~ 87 (96)
T 2kvi_A 84 ARPQ 87 (96)
T ss_dssp CC--
T ss_pred CCCC
Confidence 5444
No 75
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-18 Score=109.09 Aligned_cols=84 Identities=20% Similarity=0.468 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhc------CCeeC
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ------GTAIG 124 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~------~~~~~ 124 (155)
......++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|+.|+..|+ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3456788999999999999999999999999999999874 37899999999999999999999 99999
Q ss_pred CeEEEEEeccCCCCCC
Q 038175 125 KQTVRLSWGHNPGNKQ 140 (155)
Q Consensus 125 g~~l~v~~~~~~~~~~ 140 (155)
|+.|+|.|++++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999998764444
No 76
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=7.5e-19 Score=104.90 Aligned_cols=77 Identities=29% Similarity=0.561 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.....++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|+.|+..|+|..+.|+.|+|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 356789999999999999999999999999999998854 37899999999999999999999999999999999
Q ss_pred ecc
Q 038175 132 WGH 134 (155)
Q Consensus 132 ~~~ 134 (155)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 77
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=107.12 Aligned_cols=82 Identities=17% Similarity=0.412 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|+..|+|..+.|+.|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999998754 4899999999999999999999999999999999
Q ss_pred eccCCCC
Q 038175 132 WGHNPGN 138 (155)
Q Consensus 132 ~~~~~~~ 138 (155)
|++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987543
No 78
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=8.4e-19 Score=109.75 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
.++.++|||+|||..+++++|+++|++||.|..+.++. ++|+|||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999864 268999999999999999999999999999999999
Q ss_pred ccCC
Q 038175 133 GHNP 136 (155)
Q Consensus 133 ~~~~ 136 (155)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 79
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=6.7e-19 Score=105.54 Aligned_cols=78 Identities=31% Similarity=0.609 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
....++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+|+|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 356789999999999999999999999999999998753 58999999999999999999999999999999999
Q ss_pred ccCC
Q 038175 133 GHNP 136 (155)
Q Consensus 133 ~~~~ 136 (155)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9753
No 80
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-18 Score=109.13 Aligned_cols=83 Identities=28% Similarity=0.424 Sum_probs=74.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
.......++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|+..+++ .+.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 455678899999999999999999999999999999998763 58999999999999999999998 89999999
Q ss_pred EEeccCCCCC
Q 038175 130 LSWGHNPGNK 139 (155)
Q Consensus 130 v~~~~~~~~~ 139 (155)
|+|+......
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999765433
No 81
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=1.6e-18 Score=106.14 Aligned_cols=79 Identities=27% Similarity=0.446 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 57 DGKSNNATIFVGALDS-NVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
......++|||+|||. .+++++|+++|++||.|..+.+. +|+|||+|.+.++|+.|+..|+|..+.|+.|+|.|+++
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 4567889999999998 99999999999999999999986 89999999999999999999999999999999999876
Q ss_pred CC
Q 038175 136 PG 137 (155)
Q Consensus 136 ~~ 137 (155)
+.
T Consensus 95 ~~ 96 (97)
T 2xnq_A 95 NA 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 82
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-18 Score=109.37 Aligned_cols=83 Identities=22% Similarity=0.389 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCee
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEIL--------SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--------~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
.....++|||+|||..+++++|+++|++||.|. .+++..+ +|+|||+|.+.++|+.|+..|+|..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999998 5887653 68999999999999999999999999
Q ss_pred CCeEEEEEeccCCCCCC
Q 038175 124 GKQTVRLSWGHNPGNKQ 140 (155)
Q Consensus 124 ~g~~l~v~~~~~~~~~~ 140 (155)
.|+.|+|.+++++....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999998765443
No 83
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=1.1e-18 Score=108.39 Aligned_cols=84 Identities=23% Similarity=0.467 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCee---CCeE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAI---GKQT 127 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~---~g~~ 127 (155)
......++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|+.|+..|++..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 4567789999999999999999999999999999999876 368999999999999999999999987 8999
Q ss_pred EEEEeccCCCCCC
Q 038175 128 VRLSWGHNPGNKQ 140 (155)
Q Consensus 128 l~v~~~~~~~~~~ 140 (155)
|+|.|++++..+.
T Consensus 88 l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 88 IQVKPADSESRGG 100 (106)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEECCcccccC
Confidence 9999998765443
No 84
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=1.3e-18 Score=106.24 Aligned_cols=77 Identities=18% Similarity=0.515 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..++|+.|+|.|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3679999999999999999999999999999998753 6899999999999999999999999999999999998
Q ss_pred CCC
Q 038175 135 NPG 137 (155)
Q Consensus 135 ~~~ 137 (155)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 85
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=7e-19 Score=106.59 Aligned_cols=82 Identities=28% Similarity=0.486 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
......++|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.++|+.|+..|++..+.|+.|+|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467789999999999999999999999999999998875 368999999999999999999999999999999999
Q ss_pred ccCCCC
Q 038175 133 GHNPGN 138 (155)
Q Consensus 133 ~~~~~~ 138 (155)
++++..
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987644
No 86
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=109.13 Aligned_cols=76 Identities=20% Similarity=0.341 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhc-CCeeCCeEEEEEec
Q 038175 62 NATIFVGALDSNVSDKDLRELFSHFG-EILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ-GTAIGKQTVRLSWG 133 (155)
Q Consensus 62 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~~ 133 (155)
+++|||+|||..+++++|+++|++|| .|..+++++ ++|+|||+|.+.++|++|++.++ +..++|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 799988864 37999999999999999999874 56799999999999
Q ss_pred cCCC
Q 038175 134 HNPG 137 (155)
Q Consensus 134 ~~~~ 137 (155)
+++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7653
No 87
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.3e-19 Score=109.98 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 137 (155)
...++|||+|||..+++++|+++|++||.|..+.+.+++++|||+|.+.++|+.|+..|+|..+.|+.|+|.|++...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 356799999999999999999999999999999999999999999999999999999999999999999999997643
No 88
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=4.5e-19 Score=134.81 Aligned_cols=82 Identities=21% Similarity=0.454 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
....+|||+|||..+++++|+.+|++||.|..|.|+.+ +|+|||+|.+.++|..||..|+|..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45589999999999999999999999999999998753 799999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 038175 134 HNPGNKQW 141 (155)
Q Consensus 134 ~~~~~~~~ 141 (155)
++.....+
T Consensus 180 ~~~~~~~~ 187 (437)
T 3pgw_S 180 RGRTVKGW 187 (437)
T ss_pred CCCCCCCC
Confidence 87655444
No 89
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=108.05 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCC--eEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCC----eeC
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGE--ILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGT----AIG 124 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~----~~~ 124 (155)
.......+|||+|||..+++++|+++|++||. +..+++.+ ++|+|||+|.+.++|++|++.|+|. .++
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 34567889999999999999999999999995 56788765 3789999999999999999999997 489
Q ss_pred CeEEEEEeccC
Q 038175 125 KQTVRLSWGHN 135 (155)
Q Consensus 125 g~~l~v~~~~~ 135 (155)
|++|.|+|+++
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999975
No 90
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-18 Score=107.00 Aligned_cols=82 Identities=27% Similarity=0.506 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
......++|||+|||..+++++|+++|++|| |..+.+..+ +|+|||+|.+.++|++|+ .|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3456779999999999999999999999999 999998643 689999999999999999 8999999999999
Q ss_pred EEeccCCCCCC
Q 038175 130 LSWGHNPGNKQ 140 (155)
Q Consensus 130 v~~~~~~~~~~ 140 (155)
|.+++++..+.
T Consensus 88 V~~a~~~~~~~ 98 (104)
T 1wi8_A 88 VDVADQAQDKD 98 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCCCCCC
Confidence 99998765544
No 91
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-18 Score=104.39 Aligned_cols=81 Identities=21% Similarity=0.423 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 137 (155)
.....++|||+|+ .+++++|+++|++||.|..+.+...+++|||+|.+.++|+.|+..|+|..+.|+.|+|.|++++.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 3457789999996 89999999999999999999999889999999999999999999999999999999999998764
Q ss_pred CCC
Q 038175 138 NKQ 140 (155)
Q Consensus 138 ~~~ 140 (155)
...
T Consensus 89 ~~~ 91 (97)
T 1x5p_A 89 MLD 91 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 92
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=1.2e-18 Score=108.78 Aligned_cols=81 Identities=27% Similarity=0.587 Sum_probs=73.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
.......++|||+|||..+++++|+++|++||.|..+.+. +|+|||+|.+.++|+.|+..|+|..+.|+.|+|.|+++
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4456788999999999999999999999999999999998 89999999999999999999999999999999999987
Q ss_pred CCC
Q 038175 136 PGN 138 (155)
Q Consensus 136 ~~~ 138 (155)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 644
No 93
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=1.3e-18 Score=108.87 Aligned_cols=84 Identities=25% Similarity=0.514 Sum_probs=76.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
+......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 455677899999999999999999999999999999998753 69999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 038175 130 LSWGHNPGNK 139 (155)
Q Consensus 130 v~~~~~~~~~ 139 (155)
|.|++++..+
T Consensus 100 V~~a~~~~~~ 109 (110)
T 1oo0_B 100 VDWCFVKGPK 109 (110)
T ss_dssp EEESEESSCC
T ss_pred EEEcccCCCC
Confidence 9999875443
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.9e-19 Score=108.47 Aligned_cols=83 Identities=30% Similarity=0.503 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCe-eCCeEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSH-FGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTA-IGKQTVRL 130 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~-~~g~~l~v 130 (155)
......+|||+|||..+++++|+++|++ ||.|..+.+..+ +|+|||+|.+.++|..|+..|++.. +.|+.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4567899999999999999999999999 999999998753 7899999999999999999999999 99999999
Q ss_pred EeccCCCCCC
Q 038175 131 SWGHNPGNKQ 140 (155)
Q Consensus 131 ~~~~~~~~~~ 140 (155)
.++++...+.
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9997665444
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.9e-19 Score=109.61 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEeeCC---------CcEEEEEecCHHHHHHHHHHhcCCeeCC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLR---ELFSHFGEILSVKIPVG---------KGCGFVQFANRKDAEVALQKLQGTAIGK 125 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~v~~~~~~~~---------~g~~~v~f~~~~~a~~a~~~l~~~~~~g 125 (155)
.....++|||+|||..+++++|+ ++|++||.|..+.+..+ +|+|||+|.+.++|++|++.|+|..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 35568899999999999999999 99999999999998753 3799999999999999999999999999
Q ss_pred eEEEEEeccCCCC
Q 038175 126 QTVRLSWGHNPGN 138 (155)
Q Consensus 126 ~~l~v~~~~~~~~ 138 (155)
+.|+|.|++++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999987643
No 96
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=8.2e-19 Score=109.79 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEee--CCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFG-EILSVKIP--VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~--~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
......+|||+|||..+++++|+++|++|| .|..+.+. .++|+|||+|.+.++|+.|++.|+|..+.|+.|+|.+++
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 345678999999999999999999999999 89999886 358999999999999999999999999999999999987
Q ss_pred CC
Q 038175 135 NP 136 (155)
Q Consensus 135 ~~ 136 (155)
.+
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 97
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=105.84 Aligned_cols=79 Identities=28% Similarity=0.420 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34567899999999999999999999999999999998764 6899999999999999999999999999999999
Q ss_pred eccC
Q 038175 132 WGHN 135 (155)
Q Consensus 132 ~~~~ 135 (155)
|+++
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 98
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=108.36 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=73.3
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCee-----CCeEEEE
Q 038175 58 GKSNNATIFV--GALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI-----GKQTVRL 130 (155)
Q Consensus 58 ~~~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~-----~g~~l~v 130 (155)
...+.++||| +||+..+++++|+++|++||.|..+.++.++|||||+|.+.++|++|++.|||..+ .|++|.|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 4456788999 77999999999999999999999999998899999999999999999999999988 7899999
Q ss_pred EeccCCC
Q 038175 131 SWGHNPG 137 (155)
Q Consensus 131 ~~~~~~~ 137 (155)
.|++...
T Consensus 101 ~~a~~~p 107 (114)
T 2cq2_A 101 NFVEKVQ 107 (114)
T ss_dssp EEESCCC
T ss_pred EecccCc
Confidence 9997543
No 99
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=3.2e-18 Score=105.82 Aligned_cols=82 Identities=23% Similarity=0.394 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++|| |..+.+..+ +|+|||+|.+.++|+.|+ .|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3456789999999999999999999999997 999988753 579999999999999999 89999999999999
Q ss_pred EeccCCCCCC
Q 038175 131 SWGHNPGNKQ 140 (155)
Q Consensus 131 ~~~~~~~~~~ 140 (155)
.++++.....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dng_A 88 DIAEGRKQDK 97 (103)
T ss_dssp EECCCCCCCC
T ss_pred EEecCCCCCC
Confidence 9998765444
No 100
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=104.65 Aligned_cols=78 Identities=21% Similarity=0.426 Sum_probs=72.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|++.|++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999998753 689999999999999999999999999999999
Q ss_pred Eecc
Q 038175 131 SWGH 134 (155)
Q Consensus 131 ~~~~ 134 (155)
+|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9975
No 101
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=2.7e-18 Score=113.72 Aligned_cols=82 Identities=27% Similarity=0.494 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..|.++.+ +++|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34457899999999999999999999999999999998653 589999999999999999999999999999999
Q ss_pred EeccCCCC
Q 038175 131 SWGHNPGN 138 (155)
Q Consensus 131 ~~~~~~~~ 138 (155)
.|+++...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987544
No 102
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=107.98 Aligned_cols=82 Identities=22% Similarity=0.523 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
+......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 344567789999999999999999999999999999998753 68999999999999999999999999999999
Q ss_pred EEeccCCC
Q 038175 130 LSWGHNPG 137 (155)
Q Consensus 130 v~~~~~~~ 137 (155)
|.|++++.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99997653
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=108.17 Aligned_cols=81 Identities=35% Similarity=0.590 Sum_probs=75.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|++|+..|+|..++|+.|+|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 455678899999999999999999999999999999998754 7999999999999999999999999999999999
Q ss_pred eccCC
Q 038175 132 WGHNP 136 (155)
Q Consensus 132 ~~~~~ 136 (155)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99765
No 104
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=2.2e-18 Score=105.35 Aligned_cols=80 Identities=26% Similarity=0.527 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLR----ELFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~---~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
.....++|||+|||..+++++|+ ++|++||.|..+.+.. .+|+|||+|.+.++|+.|+..|+|..+.|+.|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45678999999999999999999 9999999999998873 5799999999999999999999999999999999
Q ss_pred EeccCCC
Q 038175 131 SWGHNPG 137 (155)
Q Consensus 131 ~~~~~~~ 137 (155)
.|++++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998754
No 105
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=104.51 Aligned_cols=79 Identities=30% Similarity=0.459 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|+..|+|..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999998742 589999999999999999999999999999999
Q ss_pred EeccC
Q 038175 131 SWGHN 135 (155)
Q Consensus 131 ~~~~~ 135 (155)
+|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 106
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=107.60 Aligned_cols=82 Identities=27% Similarity=0.556 Sum_probs=74.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
+......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 455678899999999999999999999999999999988742 58999999999999999999999999999999
Q ss_pred EEeccCCC
Q 038175 130 LSWGHNPG 137 (155)
Q Consensus 130 v~~~~~~~ 137 (155)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99997653
No 107
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=6.4e-18 Score=104.07 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEee--CCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP--VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~--~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
......++|||+|||..+++++|+++|++||.|.-+... ..+++|||+|.+.++|+.|+..|++..+.|+.|+|.|++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 345678999999999999999999999999987322111 137999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 038175 135 NPGNKQ 140 (155)
Q Consensus 135 ~~~~~~ 140 (155)
++....
T Consensus 90 ~~~~~~ 95 (101)
T 2fc9_A 90 PRGSPN 95 (101)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 764433
No 108
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=5.2e-18 Score=105.50 Aligned_cols=80 Identities=25% Similarity=0.454 Sum_probs=73.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
.......++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|+..|+|..+.|+.|+|
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 455678899999999999999999999999999999998743 689999999999999999999999999999999
Q ss_pred EeccC
Q 038175 131 SWGHN 135 (155)
Q Consensus 131 ~~~~~ 135 (155)
+|+.+
T Consensus 103 ~~a~s 107 (107)
T 3ulh_A 103 QLVTS 107 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99863
No 109
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=2.3e-18 Score=108.64 Aligned_cols=80 Identities=20% Similarity=0.350 Sum_probs=67.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeE-----EEEEec
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQT-----VRLSWG 133 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~-----l~v~~~ 133 (155)
.....+|||+|||..+++++|+++|++||.|..+.+..+ ++|||+|.+.++|+.|++.|+|..+.|+. |+|..+
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 346789999999999999999999999999999999876 99999999999999999999999999988 777777
Q ss_pred cCCCCC
Q 038175 134 HNPGNK 139 (155)
Q Consensus 134 ~~~~~~ 139 (155)
.+....
T Consensus 92 ~~~~~~ 97 (115)
T 3beg_B 92 GPRSPS 97 (115)
T ss_dssp C----C
T ss_pred CCCCCC
Confidence 654433
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.6e-18 Score=105.36 Aligned_cols=81 Identities=21% Similarity=0.433 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEee-------CCCcEEEEEecCHHHHHHHHHHhc--CCeeCCeE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGE-ILSVKIP-------VGKGCGFVQFANRKDAEVALQKLQ--GTAIGKQT 127 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~-------~~~g~~~v~f~~~~~a~~a~~~l~--~~~~~g~~ 127 (155)
.....++|||+|||..+++++|+++|++||. |..+.+. ..+|+|||+|.+.++|+.|+..|+ +..+.|+.
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3457889999999999999999999999998 9999987 357999999999999999999996 58999999
Q ss_pred EEEEeccCCCC
Q 038175 128 VRLSWGHNPGN 138 (155)
Q Consensus 128 l~v~~~~~~~~ 138 (155)
|+|.|+++...
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999987544
No 111
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5e-18 Score=103.85 Aligned_cols=80 Identities=21% Similarity=0.449 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEee--CCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIP--VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~--~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
.....++|||+|||..+++++|+++|++||.|. +.+. ..+|+|||+|.+.++|+.|+..|+|..+.|+.|+|.++++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 345678999999999999999999999999985 4433 5689999999999999999999999999999999999987
Q ss_pred CCC
Q 038175 136 PGN 138 (155)
Q Consensus 136 ~~~ 138 (155)
+..
T Consensus 94 ~~~ 96 (97)
T 2e5j_A 94 QRD 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 112
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=4.6e-18 Score=102.29 Aligned_cols=75 Identities=19% Similarity=0.423 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
..++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|++|+ .|+|..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999988753 689999999999999999 899999999999999997
Q ss_pred CC
Q 038175 135 NP 136 (155)
Q Consensus 135 ~~ 136 (155)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 113
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=105.05 Aligned_cols=81 Identities=28% Similarity=0.504 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE-EEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeE---
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEIL-SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQT--- 127 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~-~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~--- 127 (155)
.....++|||+|||..+++++|+++|++||.|. .+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 356789999999999999999999999999999 9988754 489999999999999999999999999999
Q ss_pred -EEEEeccCCCC
Q 038175 128 -VRLSWGHNPGN 138 (155)
Q Consensus 128 -l~v~~~~~~~~ 138 (155)
|+|.|+++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999976643
No 114
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=4e-18 Score=104.63 Aligned_cols=78 Identities=26% Similarity=0.463 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEeeCC------CcEEEEEecCHHHHHHHHHHhcCCe
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS--------VKIPVG------KGCGFVQFANRKDAEVALQKLQGTA 122 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~ 122 (155)
.......+|||+|||..+++++|+++|++||.|.. +.+..+ +|+|||+|.+.++|+.|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45678899999999999999999999999999998 887653 5899999999999999999999999
Q ss_pred eCCeEEEEEecc
Q 038175 123 IGKQTVRLSWGH 134 (155)
Q Consensus 123 ~~g~~l~v~~~~ 134 (155)
+.|+.|+|++++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 115
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3.6e-18 Score=108.07 Aligned_cols=79 Identities=27% Similarity=0.513 Sum_probs=72.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
.......++|||+|||..+++++|+++|++||.|..+++..+ +|+|||+|.+.++|+.|++.|+|..++|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345667899999999999999999999999999999998753 68999999999999999999999999999999
Q ss_pred EEecc
Q 038175 130 LSWGH 134 (155)
Q Consensus 130 v~~~~ 134 (155)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99975
No 116
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=1.6e-17 Score=105.67 Aligned_cols=90 Identities=13% Similarity=0.133 Sum_probs=73.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcE-EEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEeccCCCCC
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGC-GFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWGHNPGNK 139 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~-~~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~~ 139 (155)
..|||+||+..+++++|+++|++||.|..+.+....|+ |||+|.+.++|..|++.|+|..+.| +.|+|.|++++...
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 105 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcce
Confidence 34678999999999999999999999999988765686 9999999999999999999999976 69999999876432
Q ss_pred C-CCCCCCcCCCCC
Q 038175 140 Q-WRGDHINHWNGA 152 (155)
Q Consensus 140 ~-~~~~~~~~~~~~ 152 (155)
- .....++.+..+
T Consensus 106 v~~n~~~srDyt~~ 119 (124)
T 2e5i_A 106 VIRNDNDSWDYTKP 119 (124)
T ss_dssp CSSCSSSEEESSCC
T ss_pred eecCCCCCCCCCCC
Confidence 2 223444555443
No 117
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=1.4e-17 Score=106.43 Aligned_cols=93 Identities=23% Similarity=0.315 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-CCcE-EEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEeccC
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-GKGC-GFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWGHN 135 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-~~g~-~~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~ 135 (155)
...-.|||+||+..+++++|+++|++||.|..+.+.. .+++ |||+|.+.++|+.|++.|+|..+.| +.|+|.|+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 4556778999999999999999999999999998764 4677 9999999999999999999999987 9999999987
Q ss_pred CCCC-CCCCCCCcCCCCC
Q 038175 136 PGNK-QWRGDHINHWNGA 152 (155)
Q Consensus 136 ~~~~-~~~~~~~~~~~~~ 152 (155)
..-. +.....++.++.+
T Consensus 106 ~~l~v~~n~~~srDyt~~ 123 (130)
T 3zzy_A 106 TSLNVKYNNDKSRDYTRP 123 (130)
T ss_dssp SSCCCCCCSSSEEETTCT
T ss_pred CceeEEecCCCcccCCCC
Confidence 6432 2233445566553
No 118
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=5.4e-18 Score=108.52 Aligned_cols=82 Identities=17% Similarity=0.416 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLR----ELFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~---~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l 128 (155)
.......++|||+|||..+++++|+ ++|++||.|..|.+.. .+|+|||+|.+.++|..|+..|+|..+.|+.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3445668899999999999999876 6899999999998864 47999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 038175 129 RLSWGHNPG 137 (155)
Q Consensus 129 ~v~~~~~~~ 137 (155)
+|.|++++.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998654
No 119
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=105.64 Aligned_cols=83 Identities=24% Similarity=0.448 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+.. ++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34678899999999999999999999999999999998764 48999999999999999998 999999999999
Q ss_pred EeccCCCCCC
Q 038175 131 SWGHNPGNKQ 140 (155)
Q Consensus 131 ~~~~~~~~~~ 140 (155)
.+++++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998765433
No 120
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=3.9e-18 Score=109.61 Aligned_cols=82 Identities=28% Similarity=0.458 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
.......++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|++|+..|+|..+.|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44566789999999999999999999999999999999874 368999999999999999999999999999999
Q ss_pred EEeccCCC
Q 038175 130 LSWGHNPG 137 (155)
Q Consensus 130 v~~~~~~~ 137 (155)
|.|++++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997654
No 121
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.1e-18 Score=106.49 Aligned_cols=84 Identities=23% Similarity=0.420 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEI----LSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v----~~~~~~~--~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.....++|||+|||..+++++|+++|++||.| ..+.+.. .+|+|||+|.+.++|+.|+..|+|..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999988 4555543 47999999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 038175 132 WGHNPGNKQW 141 (155)
Q Consensus 132 ~~~~~~~~~~ 141 (155)
|++++..+..
T Consensus 101 ~a~~~~~~~~ 110 (115)
T 2cpx_A 101 FGKNKKQRSS 110 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EccCCCCCCC
Confidence 9987655543
No 122
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=8.2e-19 Score=105.98 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=64.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFG--EILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
.+|||+|||..+++++|+++|++|| .|..+++..+ +|+|||+|.+.++|++|++.|+|..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999988653 5899999999999999999999999999999999998
Q ss_pred CCCCC
Q 038175 135 NPGNK 139 (155)
Q Consensus 135 ~~~~~ 139 (155)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76443
No 123
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=6.7e-18 Score=107.69 Aligned_cols=78 Identities=23% Similarity=0.436 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
..++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+ .|+|..+.|+.|+|.|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999988642 689999999999999999 799999999999999998
Q ss_pred CCCCC
Q 038175 135 NPGNK 139 (155)
Q Consensus 135 ~~~~~ 139 (155)
+....
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 65443
No 124
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=1.4e-17 Score=110.19 Aligned_cols=80 Identities=26% Similarity=0.328 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEec
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWG 133 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~--~~g~~~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 133 (155)
......+|||+||+..+++++|+++|++||.|.++.+.. .+++|||+|.+.++|+.|++.|+|..+.| +.|+|.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 344567789999999999999999999999999999864 35799999999999999999999999965 99999999
Q ss_pred cCCC
Q 038175 134 HNPG 137 (155)
Q Consensus 134 ~~~~ 137 (155)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8764
No 125
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=1.2e-17 Score=100.41 Aligned_cols=76 Identities=16% Similarity=0.273 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
...++|||+|||..+++++|+++|++| .|..+.+.+.+|+|||+|.+.++|+.|+..|+|..+.|+.|+|.|+...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 457899999999999999999999999 9999988888999999999999999999999999999999999998654
No 126
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5e-18 Score=105.00 Aligned_cols=77 Identities=16% Similarity=0.351 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
.....++|||+|||..+++++|+++|++||.|..+.++. ++|+|||+|.+.++|+.|+. +++..+.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999986 47999999999999999999 899999999999999
Q ss_pred ccC
Q 038175 133 GHN 135 (155)
Q Consensus 133 ~~~ 135 (155)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 127
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-17 Score=100.94 Aligned_cols=81 Identities=25% Similarity=0.408 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+. ++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34567889999999999999999999999999999998753 5799999999999999998 477899999999
Q ss_pred EeccCCCCC
Q 038175 131 SWGHNPGNK 139 (155)
Q Consensus 131 ~~~~~~~~~ 139 (155)
.|+.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999876443
No 128
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-17 Score=100.33 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCc-EEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g-~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
.....++|||+|||..+++++|+++|++||.|..+.+.+..+ +|||+|.+.++|+.|+. |+|..+.|+.|+|.++.+.
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 345678999999999999999999999999999884333222 99999999999999999 9999999999999988654
Q ss_pred CC
Q 038175 137 GN 138 (155)
Q Consensus 137 ~~ 138 (155)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 129
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=107.45 Aligned_cols=81 Identities=23% Similarity=0.534 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
....++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|++.|+|..+.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 345689999999999999999999999999999988753 68999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 038175 133 GHNPGNK 139 (155)
Q Consensus 133 ~~~~~~~ 139 (155)
++++..+
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9876543
No 130
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=3.6e-17 Score=104.33 Aligned_cols=83 Identities=27% Similarity=0.443 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
.....++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|+.|+..|+|..+.|+.|+|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 456778999999999999999999999999999999876 369999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 038175 133 GHNPGNKQ 140 (155)
Q Consensus 133 ~~~~~~~~ 140 (155)
+.+.....
T Consensus 111 a~~~~~~~ 118 (124)
T 2kt5_A 111 VASQIDLE 118 (124)
T ss_dssp ECCTTCCC
T ss_pred eCCCCCCC
Confidence 98754443
No 131
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=104.81 Aligned_cols=79 Identities=18% Similarity=0.408 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
..++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+.. ++..+.|+.|+|.+++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999999998763 68999999999999999997 9999999999999998
Q ss_pred CCCCCC
Q 038175 135 NPGNKQ 140 (155)
Q Consensus 135 ~~~~~~ 140 (155)
++....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 765443
No 132
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=1.5e-17 Score=104.71 Aligned_cols=79 Identities=15% Similarity=0.388 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~---~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
.....++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|..|+..|+|..+.|+.|+|.|++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 345678999999999999999999999999999999865 37899999999999999999999999999999999997
Q ss_pred CC
Q 038175 135 NP 136 (155)
Q Consensus 135 ~~ 136 (155)
++
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 133
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=103.49 Aligned_cols=78 Identities=24% Similarity=0.326 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCe-E
Q 038175 59 KSNNATIFVGALDSNV------SDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ-T 127 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~-~ 127 (155)
....++|||+|||..+ ++++|+++|++||.|..+.+.+ ++|+|||+|.+.++|+.|+..|+|..+.|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3457899999999998 7899999999999999999874 479999999999999999999999999998 9
Q ss_pred EEEEeccCC
Q 038175 128 VRLSWGHNP 136 (155)
Q Consensus 128 l~v~~~~~~ 136 (155)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998643
No 134
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=2.7e-18 Score=105.67 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCC-e
Q 038175 60 SNNATIFVGALDS------NVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGK-Q 126 (155)
Q Consensus 60 ~~~~~l~v~~l~~------~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g-~ 126 (155)
...++|||+|||. .+++++|+++|++||.|..+.++. ++|+|||+|.+.++|++|+..|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 999999999999999999999864 36999999999999999999999999999 9
Q ss_pred EEEEEeccC
Q 038175 127 TVRLSWGHN 135 (155)
Q Consensus 127 ~l~v~~~~~ 135 (155)
.|+|.++++
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999865
No 135
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-17 Score=101.35 Aligned_cols=83 Identities=27% Similarity=0.436 Sum_probs=69.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~---~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
......++|||+|||..+++++|+++|+.|+.+.-+.-.. .+++|||+|.+.++|+.|+..|++..+.|+.|+|.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3456789999999999999999999999886444332221 2589999999999999999999999999999999999
Q ss_pred cCCCCC
Q 038175 134 HNPGNK 139 (155)
Q Consensus 134 ~~~~~~ 139 (155)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 876443
No 136
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.3e-17 Score=98.99 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
......+|||+|||..+++++|+++|++| .|..+.++.+ +|+|||+|.+.++|+.|+. |+|..++|+.|+|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 45678999999999999999999999999 8999988753 6899999999999999999 999999999999999
Q ss_pred ccCC
Q 038175 133 GHNP 136 (155)
Q Consensus 133 ~~~~ 136 (155)
++++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9765
No 137
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-18 Score=102.55 Aligned_cols=76 Identities=28% Similarity=0.482 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
....++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|++.|+|..+.|+.|++++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 356889999999999999999999999999999998753 68999999999999999999999999999998877
Q ss_pred cc
Q 038175 133 GH 134 (155)
Q Consensus 133 ~~ 134 (155)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 138
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.4e-18 Score=103.47 Aligned_cols=79 Identities=27% Similarity=0.386 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.....++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|++|++.|+|..+.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345678999999999999999999999999987554432 26899999999999999999999999999999999
Q ss_pred eccCC
Q 038175 132 WGHNP 136 (155)
Q Consensus 132 ~~~~~ 136 (155)
+++.+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 139
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-17 Score=103.00 Aligned_cols=80 Identities=15% Similarity=0.450 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCee--------
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAI-------- 123 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~-------- 123 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999998754 68999999999999999999999998
Q ss_pred CCeEEEEEeccCC
Q 038175 124 GKQTVRLSWGHNP 136 (155)
Q Consensus 124 ~g~~l~v~~~~~~ 136 (155)
.+++|.|+|++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999854
No 140
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=3.7e-17 Score=97.93 Aligned_cols=76 Identities=25% Similarity=0.541 Sum_probs=68.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 45678899999999999999999999999999999998753 6899999999999999997 5888999999999
Q ss_pred Eec
Q 038175 131 SWG 133 (155)
Q Consensus 131 ~~~ 133 (155)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 141
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=107.88 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--EEeeCC------CcEEEEEecCHHHHHHHHHHhcCC----eeC
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS--VKIPVG------KGCGFVQFANRKDAEVALQKLQGT----AIG 124 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~----~~~ 124 (155)
......++|||+|||..+++++|+++|++||.|.. ++++.+ +|+|||+|.+. +|..|+..|+|. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 44567889999999999999999999999999966 887653 69999999999 999999999999 999
Q ss_pred CeEEEEEeccCCCCCC
Q 038175 125 KQTVRLSWGHNPGNKQ 140 (155)
Q Consensus 125 g~~l~v~~~~~~~~~~ 140 (155)
|+.|+|.|+++..+..
T Consensus 97 gr~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 97 GKTINVEFAKGSKRDM 112 (131)
T ss_dssp GCCCCCEECCCSCCCC
T ss_pred CEEEEEEECCCCCCCC
Confidence 9999999998754433
No 142
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=100.04 Aligned_cols=80 Identities=15% Similarity=0.259 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eeCC--CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVK-IPVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~-~~~~--~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
.....++|||+|||..+++++|+++|++||.|..++ +..+ .+.|||+|.+.++|+.|+..|+|..+.|+.|+|.+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345678999999999999999999999999999994 6654 4559999999999999999999999999999999998
Q ss_pred CCC
Q 038175 135 NPG 137 (155)
Q Consensus 135 ~~~ 137 (155)
+..
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 763
No 143
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=2.9e-17 Score=104.41 Aligned_cols=80 Identities=21% Similarity=0.424 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 137 (155)
.....++|||+|+ .+++++|+++|++||.|..+.+...+|+|||+|.+.++|+.|+..|+|..+.|+.|+|.|++++.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 4567899999996 69999999999999999999999889999999999999999999999999999999999998764
Q ss_pred CC
Q 038175 138 NK 139 (155)
Q Consensus 138 ~~ 139 (155)
..
T Consensus 113 ~~ 114 (121)
T 2bz2_A 113 ML 114 (121)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 144
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=100.48 Aligned_cols=81 Identities=27% Similarity=0.426 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~--~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
.....++|||+|||..+++++|+++|++||.|..+ ... .+|+|||+|.+.++|+.|+..|+|..+.|+.|+|.++++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 45568999999999999999999999999988776 222 378999999999999999999999999999999999977
Q ss_pred CCCC
Q 038175 136 PGNK 139 (155)
Q Consensus 136 ~~~~ 139 (155)
+...
T Consensus 91 ~~~~ 94 (96)
T 1fjc_A 91 KGGT 94 (96)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6443
No 145
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.6e-18 Score=106.23 Aligned_cols=75 Identities=23% Similarity=0.433 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
..++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|+.|+ .|+|..+.|+.|+|.|++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999874 3689999999999999999 899999999999999997
Q ss_pred CC
Q 038175 135 NP 136 (155)
Q Consensus 135 ~~ 136 (155)
+.
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 146
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=103.33 Aligned_cols=78 Identities=27% Similarity=0.509 Sum_probs=67.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
......++|||+|||..+++++|+++|++|| |..+.+..+ +|+|||+|.+.++|..|+ .|+|..+.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3456789999999999999999999999999 999998653 689999999999999999 8999999999999
Q ss_pred EEeccCC
Q 038175 130 LSWGHNP 136 (155)
Q Consensus 130 v~~~~~~ 136 (155)
|.++++.
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999765
No 147
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=2.5e-18 Score=111.64 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
......+|||+|||.++++++|+++|++|| +..+.++. ++|+|||+|.+.++|++|+ .+++..++++.|+|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 66888874 3789999999999999999 6899999999999999
Q ss_pred ccCCCC
Q 038175 133 GHNPGN 138 (155)
Q Consensus 133 ~~~~~~ 138 (155)
+..+..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 148
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=4.5e-17 Score=105.77 Aligned_cols=77 Identities=29% Similarity=0.582 Sum_probs=70.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|++|++.|+|..+.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999998653 799999999999999999999999999999999
Q ss_pred Eec
Q 038175 131 SWG 133 (155)
Q Consensus 131 ~~~ 133 (155)
+|+
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 985
No 149
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-17 Score=100.15 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILS-VKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
......+|||+|||..+++++|+++|++||.|.. +.+.. .+|+|||+|.+.++|++|+.. ++..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3467899999999999999999999999999987 77754 379999999999999999997 9999999999999
Q ss_pred eccCCCC
Q 038175 132 WGHNPGN 138 (155)
Q Consensus 132 ~~~~~~~ 138 (155)
++.....
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9865443
No 150
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=4e-17 Score=97.72 Aligned_cols=73 Identities=18% Similarity=0.447 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeE
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHF----G-------EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQT 127 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 127 (155)
....++|||+|||..+++++|+++|++| | .|..+.+.+++|+|||+|.+.++|+.|+ .|+|..+.|+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 3467899999999999999999999999 8 8999999999999999999999999999 99999999999
Q ss_pred EEEEe
Q 038175 128 VRLSW 132 (155)
Q Consensus 128 l~v~~ 132 (155)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 151
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=8.6e-18 Score=102.31 Aligned_cols=77 Identities=25% Similarity=0.304 Sum_probs=66.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
.+..++|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 44579999999999999999999999999987655543 368999999999999999999999999999999999
Q ss_pred ccC
Q 038175 133 GHN 135 (155)
Q Consensus 133 ~~~ 135 (155)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 754
No 152
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=6.7e-17 Score=100.91 Aligned_cols=81 Identities=22% Similarity=0.420 Sum_probs=68.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..+ +..+.|+.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 44567899999999999999999999999999999998753 689999999999999999975 58899999999
Q ss_pred EeccCCCC
Q 038175 131 SWGHNPGN 138 (155)
Q Consensus 131 ~~~~~~~~ 138 (155)
.++.+...
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99986543
No 153
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=108.21 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFG--EILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
...++|||+|||..+++++|+++|++|| .|..+++..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999998643 6899999999999999999999999999999999
Q ss_pred eccCC
Q 038175 132 WGHNP 136 (155)
Q Consensus 132 ~~~~~ 136 (155)
++.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99754
No 154
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=7.1e-17 Score=111.45 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 60 SNNATIFVGALD-SNVSDKDLRELFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 60 ~~~~~l~v~~l~-~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
...++|||+||| ..+++++|+++|++||.|..+++..+ +|+|||+|.+.++|+.|++.|+|..+.|+.|+|.|++.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 467899999999 89999999999999999999999874 799999999999999999999999999999999999754
No 155
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=98.85 Aligned_cols=69 Identities=28% Similarity=0.411 Sum_probs=63.6
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCe-EEEE
Q 038175 62 NATIFVGALDSNV------SDKDLRELFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ-TVRL 130 (155)
Q Consensus 62 ~~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~-~l~v 130 (155)
.++|||+|||..+ ++++|+++|++||.|..+.+++ ++|+|||+|.+.++|+.|+..|+|..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999998 6799999999999999999874 479999999999999999999999999999 8876
No 156
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-16 Score=94.67 Aligned_cols=75 Identities=24% Similarity=0.366 Sum_probs=66.0
Q ss_pred CCCCcE-EEEcCCCCCCCHHH----HHHHhhccC-CeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 59 KSNNAT-IFVGALDSNVSDKD----LRELFSHFG-EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 59 ~~~~~~-l~v~~l~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
.+++.+ |||+|||..+++++ |+++|++|| .|..|. .|+|||+|.+.++|++|++.|+|..+.|++|+|+|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 345566 99999999999987 558999995 998872 39999999999999999999999999999999999
Q ss_pred ccCCC
Q 038175 133 GHNPG 137 (155)
Q Consensus 133 ~~~~~ 137 (155)
++...
T Consensus 81 A~~~s 85 (96)
T 2diu_A 81 TPKNR 85 (96)
T ss_dssp SCCSC
T ss_pred cCCCc
Confidence 98654
No 157
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=2.1e-17 Score=96.29 Aligned_cols=69 Identities=26% Similarity=0.470 Sum_probs=64.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 64 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|++|++ +++..++|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999988653 5899999999999999998 8999999999999975
No 158
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=6.1e-18 Score=102.03 Aligned_cols=76 Identities=30% Similarity=0.535 Sum_probs=66.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.+ |..|+..|+|..+.|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999998753 689999999999 99999999999999999999999775
Q ss_pred CCC
Q 038175 137 GNK 139 (155)
Q Consensus 137 ~~~ 139 (155)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 433
No 159
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.3e-17 Score=99.57 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=68.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
......+|||+|||..+++++|+++|++||.+ .++++.+ +|+|||+|.+.++|++|++ +++..++++.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 45677899999999999999999999999955 8877642 6899999999999999995 799999999999999
Q ss_pred ccCCC
Q 038175 133 GHNPG 137 (155)
Q Consensus 133 ~~~~~ 137 (155)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 160
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=97.54 Aligned_cols=79 Identities=28% Similarity=0.496 Sum_probs=66.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 138 (155)
...++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+++... ...+.++.|+|.+++++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 46799999999999999999999999999999998764 89999999999999754321 2345899999999987644
Q ss_pred CC
Q 038175 139 KQ 140 (155)
Q Consensus 139 ~~ 140 (155)
..
T Consensus 81 ~~ 82 (88)
T 1wf0_A 81 SN 82 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 161
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=3.3e-17 Score=106.03 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=70.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeE
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGE---ILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQT 127 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 127 (155)
.+......+|||+|||.++++++|+++|++||. |..+++.. ++|+|||+|.+.++|++|++ +++..++|+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 345567899999999999999999999999998 77888764 36899999999999999999 9999999999
Q ss_pred EEEEeccC
Q 038175 128 VRLSWGHN 135 (155)
Q Consensus 128 l~v~~~~~ 135 (155)
|+|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999854
No 162
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.3e-17 Score=102.15 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEI-LSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
.....++|||+|||..+++++|+++|++||.| ..+++.. .+|+|||+|.+.++|+.|+.. ++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567899999999999999999999999999 7787764 479999999999999999987 9999999999999
Q ss_pred eccCCC
Q 038175 132 WGHNPG 137 (155)
Q Consensus 132 ~~~~~~ 137 (155)
++.+..
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997643
No 163
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=98.11 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-----EEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILS-----VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-----~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
....++|||+|||..+++++|+++|++||.|.. ...-.++|+|||+|.+.++|++|++ |+|..+.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 346789999999999999999999999997654 1222358999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 038175 134 HNPGNK 139 (155)
Q Consensus 134 ~~~~~~ 139 (155)
+++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 865433
No 164
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1e-18 Score=110.34 Aligned_cols=82 Identities=24% Similarity=0.433 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEeeCC------CcEEEEEecCHHHHHHHHHHhcCCee
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILS--------VKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI 123 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~ 123 (155)
.....++|||+|||..+++++|+++|++||.|.. +.+..+ +|+|||+|.+.++|+.|+..|+|..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567889999999999999999999999999988 766643 68999999999999999999999999
Q ss_pred CCeEEEEEeccCCCCC
Q 038175 124 GKQTVRLSWGHNPGNK 139 (155)
Q Consensus 124 ~g~~l~v~~~~~~~~~ 139 (155)
.|+.|+|.+++++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999876443
No 165
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=106.23 Aligned_cols=85 Identities=25% Similarity=0.405 Sum_probs=72.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEee---CCCcEEEEEecCHHHHHHHHHHhcCCeeC
Q 038175 56 SDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILS--------VKIP---VGKGCGFVQFANRKDAEVALQKLQGTAIG 124 (155)
Q Consensus 56 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~---~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 124 (155)
.......++|||+|||..+++++|+.+|++||.|.. +.+. ..+|+|||+|.+.++|..|+..|+|..+.
T Consensus 39 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 39 YEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CCCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 344667899999999999999999999999998765 3322 35799999999999999999999999999
Q ss_pred CeEEEEEeccCCCCCC
Q 038175 125 KQTVRLSWGHNPGNKQ 140 (155)
Q Consensus 125 g~~l~v~~~~~~~~~~ 140 (155)
|+.|+|.|+++...+.
T Consensus 119 g~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 119 GKPMVVQFARSARPKQ 134 (143)
T ss_dssp TEECEEEECCCSCC--
T ss_pred CcEEEEEECCCCCCcc
Confidence 9999999998754433
No 166
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=5.6e-17 Score=113.81 Aligned_cols=80 Identities=25% Similarity=0.544 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCee-----
Q 038175 58 GKSNNATIFVGALDSNV---------SDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI----- 123 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~----- 123 (155)
.....++|||+|||..+ ++++|+.+|++||.|..|.+..++|+|||+|.+.++|+.|++.|+|..+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 46678999999999998 6999999999999999999999999999999999999999999999999
Q ss_pred -------CCeEEEEEeccCCC
Q 038175 124 -------GKQTVRLSWGHNPG 137 (155)
Q Consensus 124 -------~g~~l~v~~~~~~~ 137 (155)
.|+.|.|+|++...
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 89999999998643
No 167
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=96.01 Aligned_cols=70 Identities=24% Similarity=0.516 Sum_probs=65.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..++ ..+.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999988753 6899999999999999999999 8999999999986
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=2.9e-16 Score=94.54 Aligned_cols=76 Identities=28% Similarity=0.494 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCCe--eCCeEEEEEecc
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTA--IGKQTVRLSWGH 134 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-~~g~~~v~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~ 134 (155)
......+|||+|||.++++++|+++|++||.|..+.++. ++|+|||+|.+.++|++ +++.. +.|+.|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 356789999999999999999999999999999999886 48999999999999883 55655 469999999997
Q ss_pred CCC
Q 038175 135 NPG 137 (155)
Q Consensus 135 ~~~ 137 (155)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 169
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-17 Score=103.07 Aligned_cols=91 Identities=21% Similarity=0.310 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 60 SNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
....+|||+|||..+++++|+++|++| .|..+.+.. .+|+|||+|.+.++|++|+ .+++..++|+.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345799999999999999999999999 888998874 3799999999999999999 589999999999998875
Q ss_pred CCCCCCCCCCCCcCCCCCCCC
Q 038175 135 NPGNKQWRGDHINHWNGAHYG 155 (155)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~g 155 (155)
.. .+....+....++.||
T Consensus 92 ~~---~~~~~~g~~~~~~~~~ 109 (109)
T 2dnn_A 92 ER---QWVAAGGHITSGPSSG 109 (109)
T ss_dssp HH---HHHHHHCCCCSCCCC-
T ss_pred cc---chhhcCCccCCCCCCC
Confidence 42 2323333344444554
No 170
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=1.1e-16 Score=101.27 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGE---ILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
.....++|||+|||..+++++|+++|+.||. |..+++..+ +|+|||+|.+.++|++|+. +++..++|+.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 3556789999999999999999999999998 788887642 6899999999999999999 999999999999
Q ss_pred EEeccC
Q 038175 130 LSWGHN 135 (155)
Q Consensus 130 v~~~~~ 135 (155)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999864
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=6.5e-16 Score=102.54 Aligned_cols=76 Identities=33% Similarity=0.608 Sum_probs=70.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCC------cEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 62 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~------g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
.++|||+|||..+++++|+++|++||.|..+.+..++ |+|||+|.+.++|+.|++.|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999987643 8999999999999999999999999999999999876
Q ss_pred CC
Q 038175 136 PG 137 (155)
Q Consensus 136 ~~ 137 (155)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 172
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=1.2e-15 Score=101.58 Aligned_cols=77 Identities=26% Similarity=0.526 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
..++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|++.|+|..+.|+.|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999988653 5899999999999999999999999999999999997
Q ss_pred CCC
Q 038175 135 NPG 137 (155)
Q Consensus 135 ~~~ 137 (155)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 173
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.66 E-value=9.3e-17 Score=93.50 Aligned_cols=69 Identities=26% Similarity=0.595 Sum_probs=63.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 64 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
+|||+|||..+++++|+++|++||.|..+.+.. ++|+|||+|.+.++|+.|+.. ++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999998864 368999999999999999985 889999999999875
No 174
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=2.3e-16 Score=110.54 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFG--EILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
..++|||+|||..+++++|+++|++|| .|..|++..+ +|||||+|.+.++|++||..|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 577899999999999999999999999 9999998753 68999999999999999999999999999999999
Q ss_pred ccC
Q 038175 133 GHN 135 (155)
Q Consensus 133 ~~~ 135 (155)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 175
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=5.5e-16 Score=104.65 Aligned_cols=79 Identities=28% Similarity=0.477 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
.....++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|+.|+..|+|..+.|+.|+|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999875 369999999999999999999999999999999999
Q ss_pred ccCC
Q 038175 133 GHNP 136 (155)
Q Consensus 133 ~~~~ 136 (155)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9764
No 176
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.6e-15 Score=100.49 Aligned_cols=76 Identities=29% Similarity=0.596 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPG 137 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 137 (155)
++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|..|+..|+|..+.|+.|+|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999998753 5899999999999999999999999999999999987654
Q ss_pred C
Q 038175 138 N 138 (155)
Q Consensus 138 ~ 138 (155)
.
T Consensus 81 ~ 81 (166)
T 3md3_A 81 Q 81 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 177
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=1.4e-15 Score=105.38 Aligned_cols=79 Identities=32% Similarity=0.501 Sum_probs=70.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
+..+.++|||+|||.++++++|+++|++||.|..+++.++ +|+|||+|.+.++|+.|+..+++..+.|+.|++.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 3456789999999999999999999999999999998753 5899999999999999999999999999999999
Q ss_pred eccCC
Q 038175 132 WGHNP 136 (155)
Q Consensus 132 ~~~~~ 136 (155)
++...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 98653
No 178
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.8e-16 Score=97.73 Aligned_cols=77 Identities=27% Similarity=0.499 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
....++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+. ++..+.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 446789999999999999999999999999999998763 6999999999999999998 999999999999998
Q ss_pred cCCC
Q 038175 134 HNPG 137 (155)
Q Consensus 134 ~~~~ 137 (155)
.+..
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7543
No 179
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=98.58 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGE---ILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
......+|||+|||..+++++|+++|+.||. |..+++.. .+|+|||+|.+.++|++|+. +++..++|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 4567889999999999999999999999988 88888864 37899999999999999999 999999999999
Q ss_pred EEeccC
Q 038175 130 LSWGHN 135 (155)
Q Consensus 130 v~~~~~ 135 (155)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999865
No 180
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-16 Score=100.50 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=68.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSV-KIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 131 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 131 (155)
......+|||+|||..+++++|+++|++||.|..+ .+.. .+|+|||+|.+.++|+.|+. |++..++|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999998653 3321 36899999999999999999 99999999999999
Q ss_pred eccCC
Q 038175 132 WGHNP 136 (155)
Q Consensus 132 ~~~~~ 136 (155)
++...
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 181
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.64 E-value=1.9e-15 Score=107.74 Aligned_cols=78 Identities=28% Similarity=0.598 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHN 135 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 135 (155)
.....++|||+|||..+++++|+++|++||.|..+.+.+++|+|||+|.+.++|..|+..|+|..+.|+.|+|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999999875
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=3.9e-15 Score=104.25 Aligned_cols=80 Identities=25% Similarity=0.456 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 57 DGKSNNATIFVGALDS-NVSDKDLRELFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
......++|||+|||. .+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|++.|+|..+.|+.|+|.+++
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 3456789999999999 9999999999999999999999876 5999999999999999999999999999999999997
Q ss_pred CC
Q 038175 135 NP 136 (155)
Q Consensus 135 ~~ 136 (155)
..
T Consensus 109 ~~ 110 (229)
T 2adc_A 109 HQ 110 (229)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 183
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=3.3e-16 Score=98.64 Aligned_cols=74 Identities=28% Similarity=0.449 Sum_probs=46.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC--------------------
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-------------------- 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-------------------- 55 (155)
|.|||.++|+++|+++|+ ++.++.+. +.++|||||+|.+.++|++|+..|++
T Consensus 10 V~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~ 87 (115)
T 4f25_A 10 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 87 (115)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC--
T ss_pred ECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccc
Confidence 679999999999999999 55666664 45799999999999999999999988
Q ss_pred ---CCCCCCCcEEEEcCCCCCCCHH
Q 038175 56 ---SDGKSNNATIFVGALDSNVSDK 77 (155)
Q Consensus 56 ---~~~~~~~~~l~v~~l~~~~~~~ 77 (155)
........+|||+|||..++++
T Consensus 88 ~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 88 AELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp -------------------------
T ss_pred cccccccCCCCceEeCCCCCCcccc
Confidence 1122344579999999988765
No 184
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.4e-15 Score=91.50 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCCeeC
Q 038175 58 GKSNNATIFVGALDSNVS-----------DKDLRELFSHFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIG 124 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~g~v~~~~~~~--~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 124 (155)
.....++|+|.|+..... +++|+++|++||.|..+.+.. .+|+|||+|.+.++|+.|+..|+|..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456788999999955432 579999999999999997753 4799999999999999999999999999
Q ss_pred CeEEEEEeccCCCC
Q 038175 125 KQTVRLSWGHNPGN 138 (155)
Q Consensus 125 g~~l~v~~~~~~~~ 138 (155)
|+.|+|.|+.+...
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999976543
No 185
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=2e-15 Score=103.28 Aligned_cols=76 Identities=26% Similarity=0.495 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 61 NNATIFVGALDS-NVSDKDLRELFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 61 ~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
..++|||+|||. .+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+|.|++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 468999999999 9999999999999999999999876 699999999999999999999999999999999999764
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=5.8e-15 Score=106.13 Aligned_cols=80 Identities=26% Similarity=0.529 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLR----ELFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~---~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
.....++|||+|||..+++++|+ ++|++||.|..+.+.+ .+|+|||+|.+.++|..|++.|+|..+.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45678999999999999999977 8999999999999875 4799999999999999999999999999999999
Q ss_pred EeccCCC
Q 038175 131 SWGHNPG 137 (155)
Q Consensus 131 ~~~~~~~ 137 (155)
.|++...
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997644
No 187
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=6.2e-15 Score=98.44 Aligned_cols=75 Identities=19% Similarity=0.458 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHF----G-------EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
..++|||+|||..+++++|+++|++| | .|..+.+.+++|+|||+|.+.++|+.|+ .++|..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 56899999999999999999999999 7 8888999999999999999999999999 8999999999999
Q ss_pred EEeccCC
Q 038175 130 LSWGHNP 136 (155)
Q Consensus 130 v~~~~~~ 136 (155)
|.++...
T Consensus 82 v~~~~~~ 88 (172)
T 2g4b_A 82 IRRPHDY 88 (172)
T ss_dssp EECCSSC
T ss_pred ecCCccc
Confidence 9997654
No 188
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=1.2e-14 Score=99.05 Aligned_cols=75 Identities=19% Similarity=0.444 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHF----G-------EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
..++|||+|||..+++++|+++|++| | .|..+.+.+++|+|||+|.+.++|+.|+ .|+|..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 47899999999999999999999999 6 7888888889999999999999999999 7999999999999
Q ss_pred EEeccCC
Q 038175 130 LSWGHNP 136 (155)
Q Consensus 130 v~~~~~~ 136 (155)
|.+++..
T Consensus 82 v~~~~~~ 88 (198)
T 2yh0_A 82 IRRPHDY 88 (198)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998764
No 189
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1e-14 Score=91.64 Aligned_cols=72 Identities=21% Similarity=0.424 Sum_probs=59.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC---------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEE
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV---------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~---------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l 128 (155)
.....++|||+|||..+++++|+++|++||.|. +.++. .+|+|||+|.+.++|++|++.|+ .+.|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 345678999999999999999999999999998 66643 37999999999999999999883 2455555
Q ss_pred EEEe
Q 038175 129 RLSW 132 (155)
Q Consensus 129 ~v~~ 132 (155)
.+..
T Consensus 81 ~~~~ 84 (114)
T 2dnl_A 81 LCVS 84 (114)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 4443
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=1.4e-14 Score=89.68 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEeeC-------CCcEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 038175 59 KSNNATIFVGALDS-----NVSDKDLRELFSHFGEILSVKIPV-------GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 126 (155)
Q Consensus 59 ~~~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~v~~~~~~~-------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~ 126 (155)
....++|++.|+.. .-.+++|++.|++||.|..+.++. ++|++||+|.+.++|.+|+..|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45678999999973 136789999999999999998864 369999999999999999999999999999
Q ss_pred EEEEEeccC
Q 038175 127 TVRLSWGHN 135 (155)
Q Consensus 127 ~l~v~~~~~ 135 (155)
.|+|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 191
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.59 E-value=8.8e-15 Score=99.64 Aligned_cols=80 Identities=19% Similarity=0.401 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+.. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 44567899999999999999999999999999999988753 57999999999999999986 899999999999
Q ss_pred EeccCCC
Q 038175 131 SWGHNPG 137 (155)
Q Consensus 131 ~~~~~~~ 137 (155)
.++.+..
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987643
No 192
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=96.43 Aligned_cols=76 Identities=22% Similarity=0.303 Sum_probs=67.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEI----LSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v----~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
.....+|||+|||..+++++|+++|++||.| ..+.+.. .+|+|||+|.+.++|++|+.. ++..++++.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 4567899999999999999999999999975 5677654 368999999999999999996 99999999999
Q ss_pred EEeccC
Q 038175 130 LSWGHN 135 (155)
Q Consensus 130 v~~~~~ 135 (155)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998754
No 193
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=4.2e-15 Score=94.77 Aligned_cols=77 Identities=27% Similarity=0.431 Sum_probs=67.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--EEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 57 DGKSNNATIFVGALDSNVSDKDLRELFSHFGEIL--SVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 57 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
.......+|||+|||..+++++|+++|++| .|. .+.+.. ++|+|||+|.+.++|++|+.. ++..++|+.|+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 345667899999999999999999999999 566 788874 379999999999999999985 78999999999
Q ss_pred EEeccC
Q 038175 130 LSWGHN 135 (155)
Q Consensus 130 v~~~~~ 135 (155)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 194
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=1.5e-14 Score=99.86 Aligned_cols=76 Identities=22% Similarity=0.499 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
..++|||+|||.++++++|+++|++||.|..+.+.. .+|+|||+|.+.++|+.|++.|++..+.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 467999999999999999999999999999999864 37999999999999999999999999999999999876
Q ss_pred CC
Q 038175 135 NP 136 (155)
Q Consensus 135 ~~ 136 (155)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 195
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=1.4e-14 Score=96.75 Aligned_cols=77 Identities=30% Similarity=0.538 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC--------CCcEEEEEecCHHHHHHHHHHhcCCeeC---CeEEE
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV--------GKGCGFVQFANRKDAEVALQKLQGTAIG---KQTVR 129 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~--------~~g~~~v~f~~~~~a~~a~~~l~~~~~~---g~~l~ 129 (155)
..++|||+|||..+++++|+++|++||.|..+.+.. ++|+|||+|.+.++|+.|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 568999999999999999999999999999998863 3689999999999999999999998765 67888
Q ss_pred EEeccCCC
Q 038175 130 LSWGHNPG 137 (155)
Q Consensus 130 v~~~~~~~ 137 (155)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876543
No 196
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.56 E-value=2.3e-14 Score=97.97 Aligned_cols=74 Identities=16% Similarity=0.345 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 038175 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNP 136 (155)
Q Consensus 62 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 136 (155)
.++|||+|||..+++++|+++|++||.|..++++. .+|+|||+|.+.++|+.|+..+ +..+.|+.|.|.+++.-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47999999999999999999999999999999875 3699999999999999999865 56899999999998653
No 197
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-15 Score=89.74 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=56.8
Q ss_pred cccCCCCCCHHHHHhhcc--------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCC--CCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFS--------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG--KSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~--~~~~~~l~v~ 68 (155)
|.|||+++|+++|+++|+ ++.+++++.++.++|||||+|.+.++|++|++.+++... ...++.|.|.
T Consensus 14 V~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~ 90 (95)
T 2lkz_A 14 LRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVD 90 (95)
T ss_dssp EESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEE
T ss_pred EeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEE
Confidence 689999999999999999 355667878899999999999999999999999998542 3566777663
No 198
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.54 E-value=4.1e-14 Score=104.13 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=69.3
Q ss_pred CCCCCCcEEEEcC--CCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCee---CCe--EEE
Q 038175 57 DGKSNNATIFVGA--LDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI---GKQ--TVR 129 (155)
Q Consensus 57 ~~~~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~---~g~--~l~ 129 (155)
....+..+|||+| |+..+++++|+++|++||.|..+.+..++|||||+|.+.++|++|++.|||..+ .|+ .|.
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 3467789999998 578999999999999999999999988999999999999999999999999987 244 577
Q ss_pred EEecc
Q 038175 130 LSWGH 134 (155)
Q Consensus 130 v~~~~ 134 (155)
+.|+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 88874
No 199
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=5.1e-14 Score=94.30 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=69.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-----EEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 038175 58 GKSNNATIFVGALDSNVSDKDLRELFSHFGEI-----LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 132 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-----~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 132 (155)
.....++|||+|||..+++++|+++|.+||.+ .......++|+|||+|.+.++|+.|++ |+|..+.|+.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 46678999999999999999999999998753 333444568999999999999999995 999999999999999
Q ss_pred ccCCCC
Q 038175 133 GHNPGN 138 (155)
Q Consensus 133 ~~~~~~ 138 (155)
+.+...
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 976543
No 200
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.1e-14 Score=90.81 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=63.5
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecC----HHH----HHHHHH--HhcCCe
Q 038175 63 ATIFVGAL----DSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFAN----RKD----AEVALQ--KLQGTA 122 (155)
Q Consensus 63 ~~l~v~~l----~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~----~~~----a~~a~~--~l~~~~ 122 (155)
..|||+|| |..+++.+|+.+|++||.|..+.+..+ +|+|||+|.+ +.. |..|+. .++|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999988753 6999999996 333 788888 789999
Q ss_pred eCCeEEEEEeccC
Q 038175 123 IGKQTVRLSWGHN 135 (155)
Q Consensus 123 ~~g~~l~v~~~~~ 135 (155)
++|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998654
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.53 E-value=9.4e-14 Score=85.94 Aligned_cols=76 Identities=24% Similarity=0.368 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCC--CCCC--------HHHHHHHhhccCCeEEEEeeC--------CCcEEEEEecCHHHHHHHHHHhcCC
Q 038175 60 SNNATIFVGALD--SNVS--------DKDLRELFSHFGEILSVKIPV--------GKGCGFVQFANRKDAEVALQKLQGT 121 (155)
Q Consensus 60 ~~~~~l~v~~l~--~~~~--------~~~l~~~f~~~g~v~~~~~~~--------~~g~~~v~f~~~~~a~~a~~~l~~~ 121 (155)
.+++.|.+.|+- ..+. +++|++.|++||.|..+.+++ ++|++||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 467888898883 3333 368999999999999999975 3699999999999999999999999
Q ss_pred eeCCeEEEEEeccC
Q 038175 122 AIGKQTVRLSWGHN 135 (155)
Q Consensus 122 ~~~g~~l~v~~~~~ 135 (155)
.+.|+.|+|.|...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999753
No 202
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=87.90 Aligned_cols=64 Identities=33% Similarity=0.458 Sum_probs=54.4
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+ ++.++.+..++.++|||||+|.+.++|++|+..|+|... .++.|.|
T Consensus 24 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V 93 (99)
T 4fxv_A 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKV 93 (99)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 679999999999999999 567788888899999999999999999999999998432 2344444
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2e-13 Score=83.65 Aligned_cols=67 Identities=25% Similarity=0.432 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHhhccCCeEEEEee-CCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCC
Q 038175 72 SNVSDKDLRELFSHFGEILSVKIP-VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGNKQ 140 (155)
Q Consensus 72 ~~~~~~~l~~~f~~~g~v~~~~~~-~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 140 (155)
..+++++|+++|++||.|..+.+. +.+|+|||+|.+.++|+.|+..++ .+.++.|+|.|++++..+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCCCC
Confidence 458999999999999999999987 468999999999999999999744 4689999999998765443
No 204
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.49 E-value=1.2e-13 Score=91.77 Aligned_cols=73 Identities=19% Similarity=0.489 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+.. +..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4689999999999999999999999999999998753 58999999999999999984 678999999998875
Q ss_pred C
Q 038175 135 N 135 (155)
Q Consensus 135 ~ 135 (155)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 205
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.47 E-value=3.9e-14 Score=83.99 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=60.7
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCHHHHHH
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRE 81 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~ 81 (155)
|.||++.+||++|+++|..+..+.+.....++|||||+|.+.++|.+|++.||+ .....++|.|.-. ++.++..
T Consensus 12 VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~--~~l~gr~I~V~~A----~e~~~~~ 85 (89)
T 2wbr_A 12 LKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNN--CVLANTTIFAESP----SENEVQS 85 (89)
T ss_dssp EECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT--EEETTEEEEEECC----CHHHHHH
T ss_pred EeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcC--CEECCcEEEEEEC----CHHHHHH
Confidence 679999999999999999444444333345899999999999999999999998 3445677776422 7888888
Q ss_pred Hhh
Q 038175 82 LFS 84 (155)
Q Consensus 82 ~f~ 84 (155)
+|+
T Consensus 86 ~~~ 88 (89)
T 2wbr_A 86 IMQ 88 (89)
T ss_dssp HHC
T ss_pred Hhh
Confidence 775
No 206
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.46 E-value=4.2e-14 Score=85.32 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=51.8
Q ss_pred cccCCCCCCHHHHHhhcc-------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~-------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++||++|+++|+ ++.++++..++.++|||||+|.+.++|++|++.+++.. ...++.|.|
T Consensus 6 v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~-~~~gr~i~V 77 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSL-NILGQKVSM 77 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEE-EETTEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCe-EECCEEEEE
Confidence 679999999999999998 35566677788999999999999999999998765421 123455555
No 207
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=86.07 Aligned_cols=65 Identities=9% Similarity=0.103 Sum_probs=56.2
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||.++|+++|+++|+ ++.++.+..++.++|||||+|.+.++|++|+..|++... ..+.|.|.
T Consensus 11 V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~ 81 (110)
T 3s8s_A 11 FARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQ 81 (110)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred EECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 689999999999999999 677888888899999999999999999999999998543 34555554
No 208
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=4.1e-14 Score=87.43 Aligned_cols=66 Identities=26% Similarity=0.414 Sum_probs=55.8
Q ss_pred cCCCCCCCHHHHHHHh------------hccCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 038175 68 GALDSNVSDKDLRELF------------SHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 130 (155)
Q Consensus 68 ~~l~~~~~~~~l~~~f------------~~~g~v~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 130 (155)
.+||..+++++|++.| ++||.|..+.+.++ +|+|||+|.+.++|++|+..|||..+.|+.|+|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 4455555665555554 99999999999763 799999999999999999999999999999999
Q ss_pred Eec
Q 038175 131 SWG 133 (155)
Q Consensus 131 ~~~ 133 (155)
.|+
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 209
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=6.6e-13 Score=83.71 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCCC--C---CHHHHHHHhhccCCeEEEEeeCC----------CcEEEEEecCHHHHHHHHHHhcCCeeCC
Q 038175 61 NNATIFVGALDSN--V---SDKDLRELFSHFGEILSVKIPVG----------KGCGFVQFANRKDAEVALQKLQGTAIGK 125 (155)
Q Consensus 61 ~~~~l~v~~l~~~--~---~~~~l~~~f~~~g~v~~~~~~~~----------~g~~~v~f~~~~~a~~a~~~l~~~~~~g 125 (155)
++++|++.|+-.. + .+++|++.|++||.|..+.++.+ +|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 6789999998532 2 36899999999999999988752 3799999999999999999999999999
Q ss_pred eEEEEEeccC
Q 038175 126 QTVRLSWGHN 135 (155)
Q Consensus 126 ~~l~v~~~~~ 135 (155)
+.|+|.|...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 210
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.43 E-value=1.6e-12 Score=81.38 Aligned_cols=76 Identities=12% Similarity=0.175 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCCCCC----------HHHHHHHhhccCCeEEEEeeCC--CcEEEEEecCHHHHHHHHHHhcCCeeCCeE
Q 038175 60 SNNATIFVGALDSNVS----------DKDLRELFSHFGEILSVKIPVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQT 127 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~~----------~~~l~~~f~~~g~v~~~~~~~~--~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 127 (155)
...+.|.+.|+-..-. +++|++.|++||.|..+.+.++ +|++||+|.+.++|++|+..|||..++|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4567788877755322 3578999999999999999764 699999999999999999999999999999
Q ss_pred EEEEeccC
Q 038175 128 VRLSWGHN 135 (155)
Q Consensus 128 l~v~~~~~ 135 (155)
|+|.|+..
T Consensus 85 i~v~~~~~ 92 (114)
T 3s6e_A 85 ITAAYVPL 92 (114)
T ss_dssp CEEEEECH
T ss_pred EEEEEEcH
Confidence 99999853
No 211
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.39 E-value=3.7e-13 Score=80.91 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=52.6
Q ss_pred cccCCCCCCHHHHHhhccc--------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSR--------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+. +.++.+..++.++|||||+|.+.++|++|++.+++... .++.|.|
T Consensus 6 V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V 77 (90)
T 3p5t_L 6 IGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVV 77 (90)
T ss_dssp EESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEE
T ss_pred EeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEE
Confidence 6799999999999999983 44777878899999999999999999999999998532 3444444
No 212
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.39 E-value=8.6e-13 Score=77.90 Aligned_cols=56 Identities=30% Similarity=0.528 Sum_probs=50.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++++++|+++|+ ++.++.+..++.++|||||+|.+.++|++|+..+++..
T Consensus 6 V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 67 (83)
T 3md1_A 6 VGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 67 (83)
T ss_dssp EECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe
Confidence 679999999999999999 56677787788999999999999999999999998843
No 213
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.37 E-value=1.2e-12 Score=82.05 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=64.1
Q ss_pred cccCCCCCCHHHHHhhcccce---EEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE---------cC
Q 038175 2 GYCQVSDITNSILQETFSRAK---VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV---------GA 69 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~---~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v---------~~ 69 (155)
|.|||.++|+++|+++|+.++ -+.-..++.++|||||+|.+.++|.+|+..|+|.... ++.|.| .+
T Consensus 13 V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a~~~~~~~~ 90 (115)
T 3lqv_A 13 IRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS--NRYLVVLYYNANRAFQK 90 (115)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS--SCBCEEEECCHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEEecCChhhhh
Confidence 679999999999999999322 1111124567999999999999999999999995433 344444 33
Q ss_pred CCCCCCHHHHHHHhhccCC
Q 038175 70 LDSNVSDKDLRELFSHFGE 88 (155)
Q Consensus 70 l~~~~~~~~l~~~f~~~g~ 88 (155)
++....+++++++|++||.
T Consensus 91 ~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 91 MDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp SCHHHHHHHHHHHHHHHCC
T ss_pred hhHhHhHHHHHHHHHHhCC
Confidence 4555678899999999984
No 214
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=78.00 Aligned_cols=55 Identities=33% Similarity=0.508 Sum_probs=49.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|+ ++.++.+..++.++|||||+|.+.++|++|+..+++.
T Consensus 11 v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (87)
T 3bs9_A 11 VGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 71 (87)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 679999999999999999 5667777778899999999999999999999999883
No 215
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.1e-13 Score=78.43 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=48.7
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++++++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+..|++
T Consensus 10 v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 10 IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp EESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 679999999999999999 456666767788999999999999999999999887
No 216
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=5.4e-13 Score=81.79 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=41.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++|+++|+++|+ .+.++.+ ++|||||+|.+.++|++|+..|++
T Consensus 5 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g 59 (101)
T 2hvz_A 5 VGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDG 59 (101)
T ss_dssp EECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCC
Confidence 679999999999999999 2333322 789999999999999999998877
No 217
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.36 E-value=3e-13 Score=82.59 Aligned_cols=67 Identities=13% Similarity=-0.005 Sum_probs=52.8
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||.++|+++|+++|+.++.+.+......+|+|||+|++.++|..|+..+++......++.|+|.
T Consensus 26 V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 26 IRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 6799999999999999994433333222246799999999999999999999886655667777773
No 218
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=9.6e-12 Score=78.24 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=72.1
Q ss_pred cCCCCCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecC-HHHHHHHHHHhc--CCeeCCeEEE
Q 038175 54 NGSDGKSNNATIFVGALDSN-VSDKDLRELFSHFGEILSVKIPVGKGCGFVQFAN-RKDAEVALQKLQ--GTAIGKQTVR 129 (155)
Q Consensus 54 ~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~-~~~a~~a~~~l~--~~~~~g~~l~ 129 (155)
+|....+.+..|+|+|++.. ++.++|+++|++||.|.+|.+..+...|||+|.+ .++|..|+..++ +..+.+..++
T Consensus 10 ~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 10 HGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 34667789999999999999 9999999999999999999999988899999999 799999999994 6778898888
Q ss_pred EEecc
Q 038175 130 LSWGH 134 (155)
Q Consensus 130 v~~~~ 134 (155)
++...
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 77643
No 219
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.36 E-value=1.4e-12 Score=78.97 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=50.2
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..|++.
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (95)
T 2ek1_A 20 VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (95)
T ss_dssp EECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 679999999999999999 4677777778899999999999999999999999884
No 220
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=80.28 Aligned_cols=55 Identities=35% Similarity=0.565 Sum_probs=50.5
Q ss_pred cccCCCCCCHHHHHhhcc---cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS---RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~---~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..|++.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2fc8_A 20 VKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 77 (102)
T ss_dssp EECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred EeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 679999999999999999 6677788778899999999999999999999999984
No 221
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=8.8e-12 Score=73.98 Aligned_cols=76 Identities=25% Similarity=0.401 Sum_probs=63.8
Q ss_pred CCCCCcEEEEcCCCC----CCCH----HHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 038175 58 GKSNNATIFVGALDS----NVSD----KDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 129 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~----~~~~----~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 129 (155)
..++..||+|.-.+. .+.. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |+|..++|+.|+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 356778888876652 3333 6789999999999999999654 8999999999999998 999999999999
Q ss_pred EEeccCC
Q 038175 130 LSWGHNP 136 (155)
Q Consensus 130 v~~~~~~ 136 (155)
|+++++.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9998764
No 222
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=79.49 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=50.7
Q ss_pred cccCCCCCCHHHHHhhcc------c--------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------R--------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|+ . +.++.+..++.++|||||+|.+.++|++|+..|++..
T Consensus 18 V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 18 VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp EECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred EeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 3 6677777788999999999999999999999999853
No 223
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=1.8e-12 Score=78.99 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=50.2
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++++++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..+++.
T Consensus 20 v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 20 VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp EESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred EeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 679999999999999999 4667777778899999999999999999999999984
No 224
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.3e-12 Score=78.54 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=47.6
Q ss_pred cccCCCCCCHHHHHhhcc-----cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~-----~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+. ++.++|||||+|.+.++|++|+ ++++..
T Consensus 20 V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~ 78 (102)
T 1wez_A 20 MRGLPYRATENDIYNFFSPLNPMRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKAN 78 (102)
T ss_dssp EESCCTTCCHHHHHHSSCSCCCSEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCC
T ss_pred EeCCCCCCCHHHHHHHHHHcCceEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCe
Confidence 689999999999999999 56677776 7899999999999999999999 466643
No 225
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.1e-12 Score=78.19 Aligned_cols=56 Identities=34% Similarity=0.554 Sum_probs=50.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..+++..
T Consensus 10 v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (95)
T 2dnz_A 10 VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE 71 (95)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCe
Confidence 679999999999999999 55666676778899999999999999999999999843
No 226
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.5e-13 Score=83.07 Aligned_cols=67 Identities=9% Similarity=-0.037 Sum_probs=49.5
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||+++||++|+++|+.++.+.+......+|||||+|.+.++|++|+..+++.......++|+|.
T Consensus 21 V~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 21 IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp ECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 6899999999999999993322222211123799999999999999999988764444456666663
No 227
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.34 E-value=1.1e-12 Score=77.71 Aligned_cols=56 Identities=21% Similarity=0.414 Sum_probs=48.7
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++++++|+++|+ .+.++.+..++.++|||||+|.+.++|.+|+..+++..
T Consensus 12 V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 73 (85)
T 3mdf_A 12 VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 73 (85)
T ss_dssp EECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 44555566678889999999999999999999998843
No 228
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=80.73 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=50.4
Q ss_pred cccCCCCCCHHHHHhhcc-----cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~-----~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+ .+.++.+.. +.++|||||+|.+.++|++|+ .+++.. ...+.|.|
T Consensus 21 V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~--~~gr~i~V 87 (109)
T 2dnn_A 21 VHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRML--MIQRYVEV 87 (109)
T ss_dssp EECCCSSCCHHHHHHHTTTSCCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEE--ETTEEEEE
T ss_pred EeCCCCCCCHHHHHHHhccCCeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCe--ECCeEEEE
Confidence 689999999999999999 455555654 889999999999999999999 677632 34556666
No 229
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.7e-12 Score=78.74 Aligned_cols=56 Identities=32% Similarity=0.513 Sum_probs=49.9
Q ss_pred cccCCCCCCHHHHHhhcc------cc-eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RA-KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|+ .+ .++.+..++.++|||||+|.+.++|++|+..+++..
T Consensus 10 V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (96)
T 1x5t_A 10 IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 72 (96)
T ss_dssp EECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 679999999999999999 45 677776788899999999999999999999998843
No 230
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.4e-12 Score=79.12 Aligned_cols=55 Identities=29% Similarity=0.471 Sum_probs=49.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..|++.
T Consensus 20 V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (103)
T 2cq0_A 20 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 80 (103)
T ss_dssp EESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred EeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC
Confidence 679999999999999999 5667777778899999999999999999999999884
No 231
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.3e-12 Score=77.92 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=53.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+..|++... ..+.|.|
T Consensus 20 v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 89 (95)
T 2cqc_A 20 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIRV 89 (95)
T ss_dssp EESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred EECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 679999999999999999 566777777788999999999999999999999987322 2444444
No 232
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.33 E-value=5.2e-13 Score=81.83 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=54.1
Q ss_pred cccCCC------CCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVS------DITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~------~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||. ++++++|+++|+ ++.++.+..++.++|||||+|.+.++|++|+..|+|..... .+.|.|
T Consensus 11 V~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-~r~l~V 87 (100)
T 3ns6_A 11 VNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL-KHRLFL 87 (100)
T ss_dssp EESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS-SCBCEE
T ss_pred EeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC-CeEEEE
Confidence 679999 999999999999 56667777788999999999999999999999999854332 144444
No 233
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.5e-12 Score=77.67 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=48.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++++++|+++|. .+.++.+..++.++|||||+|.+.++|++|++.|++.
T Consensus 21 V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 81 (94)
T 2e5h_A 21 VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK 81 (94)
T ss_dssp EESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE
T ss_pred EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 679999999999999999 4455556666788999999999999999999999873
No 234
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=1.7e-12 Score=79.17 Aligned_cols=64 Identities=25% Similarity=0.258 Sum_probs=51.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..+++... ..+.|.|
T Consensus 13 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 82 (99)
T 1whw_A 13 VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHV 82 (99)
T ss_dssp EECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 679999999999999999 344455555788899999999999999999999998332 2444544
No 235
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.32 E-value=2.7e-12 Score=80.43 Aligned_cols=55 Identities=31% Similarity=0.424 Sum_probs=50.2
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..|++.
T Consensus 30 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 90 (115)
T 2cpz_A 30 IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF 90 (115)
T ss_dssp EESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC
Confidence 679999999999999999 5677778778899999999999999999999999883
No 236
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=6.4e-13 Score=81.64 Aligned_cols=66 Identities=8% Similarity=-0.087 Sum_probs=51.9
Q ss_pred cccCCC-CCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVS-DITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~-~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||. ++|+++|+++|..++.+.+......+|||||+|.+.++|..|+..|++.......++|+|
T Consensus 20 V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 20 IMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp EESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred EeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 679999 999999999999443333332234568999999999999999999987655556777776
No 237
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.32 E-value=1.7e-12 Score=80.18 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=53.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCC-CCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG-KSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~-~~~~~~l~v 67 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|.+|+..|++... ....+.|.|
T Consensus 18 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 18 IGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp EESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 679999999999999999 455556666788999999999999999999999998543 223444544
No 238
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.2e-12 Score=79.12 Aligned_cols=56 Identities=30% Similarity=0.480 Sum_probs=49.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|.+|+..|++..
T Consensus 17 v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 1x5s_A 17 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 78 (102)
T ss_dssp EESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC
T ss_pred EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 55666666678899999999999999999999999854
No 239
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=1.3e-12 Score=80.58 Aligned_cols=67 Identities=9% Similarity=-0.019 Sum_probs=50.9
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||.++++++|+++|..++.+.+......+|||||+|.+.++|.+|+..+++.......+.|+|.
T Consensus 20 V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 20 VRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp EESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 6799999999999999994333322221234799999999999999999998875555566666663
No 240
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3.8e-12 Score=78.61 Aligned_cols=56 Identities=27% Similarity=0.420 Sum_probs=50.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+..+++..
T Consensus 28 V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 89 (106)
T 1p27_B 28 VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 89 (106)
T ss_dssp EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB
T ss_pred EeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE
Confidence 679999999999999999 56677777788999999999999999999999999853
No 241
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3e-12 Score=78.10 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=48.9
Q ss_pred cccCCCCCCHHHHHhhcc-------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS-------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~-------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++++++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..|++.
T Consensus 14 V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 14 MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp ECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 679999999999999999 3346677778899999999999999999999999883
No 242
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.31 E-value=2.2e-12 Score=78.31 Aligned_cols=64 Identities=25% Similarity=0.327 Sum_probs=51.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++++++|+++|+ .+.++.+..++.++|||||+|.+.++|.+|+..++|... ..+.|.|
T Consensus 7 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 76 (96)
T 2x1f_A 7 LGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKC 76 (96)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred EECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 679999999999999999 344555656788899999999999999999999998432 2344444
No 243
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.8e-12 Score=77.79 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=52.3
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|. .+.++.+. ++.++|||||+|.+.++|.+|+..|++... ..+.|.|
T Consensus 22 v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 90 (100)
T 2do4_A 22 ISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIKV 90 (100)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 679999999999999999 55666676 788999999999999999999999998332 2445554
No 244
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.31 E-value=3.4e-12 Score=76.27 Aligned_cols=55 Identities=22% Similarity=0.363 Sum_probs=49.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+ .+++..
T Consensus 11 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~ 71 (89)
T 3ucg_A 11 VGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL 71 (89)
T ss_dssp EESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE
Confidence 679999999999999999 5667777778899999999999999999999 888843
No 245
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.31 E-value=4.3e-12 Score=79.48 Aligned_cols=54 Identities=33% Similarity=0.503 Sum_probs=49.4
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..|++
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 79 (115)
T 2dgo_A 20 VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 79 (115)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 679999999999999999 566777777889999999999999999999999988
No 246
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=3.4e-12 Score=78.46 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=48.2
Q ss_pred cccCCCCCCHHHHHhhcc-----cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~-----~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+ .+++
T Consensus 20 V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 77 (103)
T 2dng_A 20 VGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG 77 (103)
T ss_dssp EESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT
T ss_pred EeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC
Confidence 679999999999999999 5666777778889999999999999999999 8888
No 247
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2.9e-12 Score=78.94 Aligned_cols=53 Identities=17% Similarity=0.078 Sum_probs=46.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|+ ++.++.+.. +.++|||||+|.+.++|.+|+. +++.
T Consensus 16 V~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~ 74 (103)
T 1s79_A 16 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQ 74 (103)
T ss_dssp EECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCC
T ss_pred EECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCC
Confidence 679999999999999999 566666765 8899999999999999999998 6653
No 248
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.30 E-value=4.7e-12 Score=81.08 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=53.4
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..|++... ..+.|.|
T Consensus 51 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l~V 120 (129)
T 2kxn_B 51 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIRV 120 (129)
T ss_dssp EETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 679999999999999999 556666777788999999999999999999999998432 3444444
No 249
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.30 E-value=1.5e-12 Score=75.39 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=46.2
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+. +++.
T Consensus 4 v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~ 63 (75)
T 2mss_A 4 VGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFH 63 (75)
T ss_dssp EECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCC
T ss_pred EecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCC
Confidence 679999999999999999 44555566678899999999999999999986 6663
No 250
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=2e-12 Score=75.17 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=47.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhc
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 54 (155)
|.|||.++++++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+..++
T Consensus 5 v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 5 IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp EESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 679999999999999999 56677777778999999999999999999998776
No 251
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2.1e-12 Score=79.18 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=48.3
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..|++
T Consensus 17 V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 2cqb_A 17 VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 76 (102)
T ss_dssp EESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 679999999999999999 455556666788999999999999999999999988
No 252
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=4.2e-12 Score=77.45 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=47.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+. +++..
T Consensus 15 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~ 75 (99)
T 2dgs_A 15 VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD 75 (99)
T ss_dssp EESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE
Confidence 679999999999999999 45555666678899999999999999999998 87743
No 253
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.30 E-value=4.9e-12 Score=77.96 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=52.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCC-CCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKS-NNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~-~~~~l~v 67 (155)
|.|||.++|+++|+++|. .+.++.+. ++.++|||||+|.+.++|++|+..|++..... ..+.|.|
T Consensus 20 v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 20 VGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 679999999999999999 55666665 68889999999999999999999999954332 2244544
No 254
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=4.6e-12 Score=76.13 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=47.5
Q ss_pred cccCCCCCCHHHHHhhcc-----cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~-----~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|. .+.++.+ .++.++|||||+|.+.++|++|+. +++.
T Consensus 15 v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~ 72 (91)
T 2dgw_A 15 LRGAPFNVTEKNVMEFLAPLKPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNRE 72 (91)
T ss_dssp EECCCSSCCHHHHHHHHTTSCCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSE
T ss_pred EECCCCCCCHHHHHHHHhhCCceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCc
Confidence 679999999999999999 5566777 678899999999999999999999 8873
No 255
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=7.5e-13 Score=82.55 Aligned_cols=67 Identities=6% Similarity=-0.120 Sum_probs=50.7
Q ss_pred cccCCCC-CCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSD-ITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~-~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||.+ +|+++|+++|..+..+.+.....++|||||+|.+.++|..|+..|++.......++|+|.
T Consensus 30 V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 30 LSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp EESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred EeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 6799998 999999999993322222111246899999999999999999998875555566777663
No 256
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.29 E-value=4.4e-12 Score=78.76 Aligned_cols=64 Identities=30% Similarity=0.496 Sum_probs=53.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|.+|+..+++... ..+.|.|
T Consensus 31 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~V 100 (108)
T 2jrs_A 31 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPMKV 100 (108)
T ss_dssp EECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 679999999999999999 566777777888999999999999999999999998432 3444444
No 257
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=2e-12 Score=79.51 Aligned_cols=56 Identities=21% Similarity=0.377 Sum_probs=48.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..|++..
T Consensus 18 V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2dnm_A 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE 79 (103)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 679999999999999999 34445555668889999999999999999999999844
No 258
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.29 E-value=4.5e-12 Score=83.73 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=54.6
Q ss_pred cccCCCCCCHHHHHhhcc--------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFS--------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||.++|+++|+++|+ ++.++.+..++.++|||||+|.+.++|++|+..|++.. ..++.|.|.
T Consensus 60 VgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~--~~Gr~l~V~ 132 (156)
T 3n9u_C 60 VGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV--LNGEKVDVR 132 (156)
T ss_dssp EECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE--ETTEECEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE--ECCeEeEEE
Confidence 679999999999999998 34567777889999999999999999999999999853 334556554
No 259
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.5e-12 Score=79.87 Aligned_cols=66 Identities=9% Similarity=-0.012 Sum_probs=49.1
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|..++.+.+......+|||||+|.+.++|..|+..+++.......+.|+|
T Consensus 20 V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 20 IRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp EESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 679999999999999999433332221123489999999999999999998765444445666666
No 260
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=3e-12 Score=78.95 Aligned_cols=56 Identities=27% Similarity=0.364 Sum_probs=48.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..|++..
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (105)
T 1x5u_A 20 VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK 81 (105)
T ss_dssp EECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 679999999999999999 34445555578899999999999999999999999844
No 261
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.29 E-value=5.3e-12 Score=78.07 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=49.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+. ++.++|||||+|.+.++|++|+..|++..
T Consensus 34 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 94 (107)
T 3ulh_A 34 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVP 94 (107)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 55666776 78899999999999999999999998843
No 262
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=4e-12 Score=78.19 Aligned_cols=65 Identities=28% Similarity=0.423 Sum_probs=55.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||.++++++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+..+++... ..+.|.|.
T Consensus 13 V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 83 (104)
T 1p1t_A 13 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVD 83 (104)
T ss_dssp EESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEE
T ss_pred EeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 679999999999999999 567777777888999999999999999999999998543 34555554
No 263
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.28 E-value=6.2e-12 Score=76.07 Aligned_cols=55 Identities=27% Similarity=0.383 Sum_probs=48.3
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++++++|+++|+ .+.++.+.. +.++|||||+|.+.++|++|+..|++..
T Consensus 21 v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (95)
T 2ywk_A 21 VGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIR 81 (95)
T ss_dssp EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCE
T ss_pred EECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 456666654 7889999999999999999999998843
No 264
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=3.3e-12 Score=77.77 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=47.7
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCC---CCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSN---TGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|. .+.++.+.. ++.++|||||+|.+.++|++|+..|++.
T Consensus 10 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 10 IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 679999999999999999 456666554 4578999999999999999999999884
No 265
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.27 E-value=6.3e-12 Score=79.02 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=48.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|+ .+.++.+. ++.++|||||+|.+.++|++|+..|++..
T Consensus 12 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 72 (116)
T 2fy1_A 12 IGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKS 72 (116)
T ss_dssp EECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCB
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 689999999999999999 45666665 78899999999999999999999998843
No 266
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=7.8e-12 Score=76.80 Aligned_cols=54 Identities=37% Similarity=0.577 Sum_probs=47.7
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+ ++.++|||||+|.+.++|.+|+..|++..
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2d9p_A 20 VKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 79 (103)
T ss_dssp EECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 4555555 67889999999999999999999999844
No 267
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.27 E-value=4.8e-12 Score=79.64 Aligned_cols=55 Identities=36% Similarity=0.495 Sum_probs=48.1
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+..|++.
T Consensus 45 V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 45 IYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp EECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 679999999999999999 3445556567888999999999999999999999883
No 268
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=5e-12 Score=77.41 Aligned_cols=53 Identities=28% Similarity=0.422 Sum_probs=46.0
Q ss_pred cccCCCCCCHHHHHhhccc---ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~---~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++|+++|+++|.. +.++.+ .++.++|||||+|.+.++|++|+..+++
T Consensus 20 V~nLp~~~t~~~l~~~F~~~g~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g 75 (101)
T 2fc9_A 20 LSNLSYSATEETLQEVFEKATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 75 (101)
T ss_dssp EESCCTTCCHHHHHHHCSSCSEEECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSS
T ss_pred EeCCCCCCCHHHHHHHHHhCCEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCC
Confidence 6799999999999999994 333334 4678899999999999999999999988
No 269
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=4.7e-12 Score=78.76 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=47.2
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhc
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 54 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|.+|+..++
T Consensus 20 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 20 IRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred EECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 679999999999999999 45555666678899999999999999999999998
No 270
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=8.8e-12 Score=77.95 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=49.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+. ++.++|||||+|.+.++|++|+..|++..
T Consensus 30 V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 30 ISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKF 90 (114)
T ss_dssp EESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 56677776 78899999999999999999999999943
No 271
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=82.65 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=53.6
Q ss_pred cccCCCCCCHHHHHhhcc------c--ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC--CCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------R--AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS--DGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~--~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|. . +.++.+..++.++|||||+|.+. +|.+|+..|++. +.....+.|.|
T Consensus 28 V~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V 102 (131)
T 2m2b_A 28 LRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINV 102 (131)
T ss_dssp ECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCC
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEE
Confidence 679999999999999999 2 56777777899999999999999 999999999985 22334444444
No 272
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=8.6e-12 Score=76.71 Aligned_cols=55 Identities=42% Similarity=0.656 Sum_probs=48.7
Q ss_pred cccCCCCCCHHHHHhhccc-------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~-------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|.. +.++.+. ++.++|||||+|.+.++|.+|+..+++..
T Consensus 14 V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 14 VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp EECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred EeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCc
Confidence 6799999999999999983 5566776 78899999999999999999999998844
No 273
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.26 E-value=7.6e-12 Score=74.49 Aligned_cols=51 Identities=24% Similarity=0.455 Sum_probs=46.2
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHH
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIE 52 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 52 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+..
T Consensus 16 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 16 VGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp EECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 679999999999999999 567777777889999999999999999999964
No 274
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.26 E-value=6e-12 Score=78.22 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=47.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|.+|+..|++.
T Consensus 31 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 91 (110)
T 1oo0_B 31 VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 91 (110)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 679999999999999999 3444455567888999999999999999999999884
No 275
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=6.4e-12 Score=78.46 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=51.5
Q ss_pred cccCCCCCCHHHHHhhccc--------------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSR--------------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~--------------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|.. +.++.+..++.++|||||+|.+.++|++|+..|++... ..+.|.|
T Consensus 20 V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 97 (113)
T 2cpe_A 20 VQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF--QGSKLKV 97 (113)
T ss_dssp EECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred EcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc--CCCEEEE
Confidence 6799999999999999992 34455556788899999999999999999999998432 2344444
No 276
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=5.4e-12 Score=80.17 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=51.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+. +++... ..+.|.|
T Consensus 30 V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~V 98 (124)
T 1wel_A 30 LKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQV 98 (124)
T ss_dssp EECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEEE
Confidence 679999999999999999 33566666788999999999999999999999 887443 3444544
No 277
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.1e-12 Score=82.58 Aligned_cols=66 Identities=9% Similarity=-0.032 Sum_probs=48.1
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||+++||++|+++|+.++.+.+......+|||||+|.+.++|.+|+..+++.......++|.|
T Consensus 36 VgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 36 IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 679999999999999999322211111112379999999999999999998876434455566666
No 278
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=4.4e-12 Score=79.61 Aligned_cols=63 Identities=29% Similarity=0.348 Sum_probs=51.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..+++ ....+.|.|
T Consensus 22 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~---~~~g~~l~V 90 (116)
T 2cqd_A 22 VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP---IIDGRKANV 90 (116)
T ss_dssp EECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC---EETTEECEE
T ss_pred EeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC---cCCCEEEEE
Confidence 679999999999999999 455556666788999999999999999999988876 233444444
No 279
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.25 E-value=7.2e-12 Score=81.03 Aligned_cols=64 Identities=25% Similarity=0.421 Sum_probs=53.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|.+|+..+++... ..+.|.|
T Consensus 47 V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 116 (139)
T 1u6f_A 47 VNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLKV 116 (139)
T ss_dssp EESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 679999999999999999 567777777888999999999999999999999998332 2444544
No 280
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1e-11 Score=76.52 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=48.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+.. ++
T Consensus 21 V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~ 79 (105)
T 2dh8_A 21 VGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RP 79 (105)
T ss_dssp CBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CC
Confidence 789999999999999999 567777777889999999999999999999987 65
No 281
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.25 E-value=3.7e-12 Score=75.91 Aligned_cols=56 Identities=25% Similarity=0.474 Sum_probs=46.1
Q ss_pred cccCCCCCCHHHHHhhccc------ceEEEcCCCCC-CcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFSR------AKVTIDSNTGH-TKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~------~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|+. +.++.+..++. ++|||||+|.+.++|++|+..+++..
T Consensus 9 V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 9 IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 71 (88)
T ss_dssp EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe
Confidence 6799999999999999993 34444444344 88999999999999999999999843
No 282
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=6.5e-12 Score=78.59 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=47.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+ .+++.
T Consensus 30 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 89 (114)
T 2cq4_A 30 CMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ 89 (114)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC
Confidence 679999999999999999 4555566667889999999999999999999 88873
No 283
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.25 E-value=7.3e-12 Score=77.39 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=47.3
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEc-CCCCCCcceEEEEeCCHHHHHHHHHHh-cCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTID-SNTGHTKGYGFVRFGDENERSRAMIEM-NGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~~-~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+ ..++.++|||||+|.+.++|++|+..+ ++..
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 20 VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred EeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 679999999999999999 3344444 457788999999999999999999999 7743
No 284
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.25 E-value=6.1e-12 Score=80.03 Aligned_cols=56 Identities=27% Similarity=0.420 Sum_probs=48.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..|++..
T Consensus 27 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 88 (126)
T 3ex7_B 27 VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 88 (126)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 679999999999999999 34445555678889999999999999999999999844
No 285
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=7.9e-12 Score=76.93 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=45.5
Q ss_pred cccCCCCCCHHHHHhhcccce-----EEEcCCC-CCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSRAK-----VTIDSNT-GHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~-----~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|..+. ++.+..+ +.++|||||+|.+.++|++|+ .+++.
T Consensus 20 V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 79 (104)
T 1wi8_A 20 LGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 79 (104)
T ss_dssp EESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC
T ss_pred EeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC
Confidence 679999999999999999443 3334444 788999999999999999999 88884
No 286
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.24 E-value=1.5e-11 Score=81.12 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=50.2
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+..|++..
T Consensus 44 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 105 (156)
T 1h2v_Z 44 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR 105 (156)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 56777777788899999999999999999999888743
No 287
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.24 E-value=4.6e-12 Score=75.92 Aligned_cols=55 Identities=31% Similarity=0.463 Sum_probs=48.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++++++|+++|+ ++.++.+..++.++|||||+|.+.+ |.+|+..+++..
T Consensus 6 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~ 66 (90)
T 2ki2_A 6 VGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD 66 (90)
T ss_dssp EEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC
T ss_pred ECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE
Confidence 679999999999999999 5566667677889999999999999 999999999854
No 288
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.23 E-value=1e-11 Score=77.21 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=50.7
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|.+|+..++ ....++.|.|
T Consensus 30 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~---~~l~g~~l~V 98 (109)
T 2rs2_A 30 IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDP 98 (109)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC---EEETTEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC---CcCCCEEEEE
Confidence 679999999999999999 45566666778999999999999999999998653 2334444444
No 289
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.23 E-value=1.3e-11 Score=77.82 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=56.9
Q ss_pred cccCCCCCCHHHHHhhcc---------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCC
Q 038175 2 GYCQVSDITNSILQETFS---------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDS 72 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~---------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~ 72 (155)
|.|||.++|+++|+++|+ .+.++.+.. +.++|||||+|.+.++|++|+. +++.. ...+.|.|.-
T Consensus 22 V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~--~~gr~i~V~~--- 94 (118)
T 2db1_A 22 LRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES--MGHRYIEVFK--- 94 (118)
T ss_dssp EESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE--ETTEEEEEEE---
T ss_pred EeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe--ECCeEEEEEE---
Confidence 689999999999999997 345566665 8899999999999999999998 77632 3455565531
Q ss_pred CCCHHHHHHHhhcc
Q 038175 73 NVSDKDLRELFSHF 86 (155)
Q Consensus 73 ~~~~~~l~~~f~~~ 86 (155)
.+..++.......
T Consensus 95 -a~~~~~~~~~~~~ 107 (118)
T 2db1_A 95 -SHRTEMDWVLKHS 107 (118)
T ss_dssp -ECHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHHh
Confidence 2344555555443
No 290
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=8.9e-12 Score=76.78 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=44.5
Q ss_pred cccCCCCCCHHHHHhhcccce-------EEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSRAK-------VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~-------~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|..+. ++.+ .++.++|||||+|.+.++|++|+.. ++.
T Consensus 20 V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~ 79 (104)
T 1wg5_A 20 LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKE 79 (104)
T ss_dssp EESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccc
Confidence 679999999999999999333 3334 5688999999999999999999987 653
No 291
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.1e-11 Score=76.13 Aligned_cols=55 Identities=29% Similarity=0.336 Sum_probs=48.2
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+. ++.++|||||+|.+.++|++|+..|++..
T Consensus 20 V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 80 (114)
T 2do0_A 20 VANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQL 80 (114)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 45666665 57889999999999999999999998843
No 292
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.22 E-value=1.3e-11 Score=78.26 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=48.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+ .+++.
T Consensus 41 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~ 100 (124)
T 2jwn_A 41 VGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET 100 (124)
T ss_dssp EEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC
Confidence 679999999999999999 5667777778899999999999999999999 78884
No 293
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.22 E-value=1.7e-11 Score=76.39 Aligned_cols=63 Identities=17% Similarity=0.092 Sum_probs=48.5
Q ss_pred cccCCCCCCHHHHHhhcccce----EEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAK----VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~----~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||+++|+++|+++|+.++ .+.- ....++|||||+|.+.++|++|++.|++... ..+.|.|
T Consensus 33 VgnLp~~~te~dL~~~F~~~G~~v~~v~i-~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i~V 99 (111)
T 2jvr_A 33 MKNLPEGCSWQDLKDLARENSLETTFSSV-NTRDFDGTGALEFPSEEILVEALERLNNIEF--RGSVITV 99 (111)
T ss_dssp EECSSCCCCHHHHHHHHHHHTCCCSEEEC-SSCSSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHhCCeeEEEEE-EcCCCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 689999999999999999443 2222 2346899999999999999999999998332 3444544
No 294
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.22 E-value=5.8e-12 Score=74.09 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=45.2
Q ss_pred cccCCCCC------CHHHHHhhcccceEE----EcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDI------TNSILQETFSRAKVT----IDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~------te~~l~~~f~~~~~~----~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++ |+++|+++|+.++.+ ....++.++|||||+|.+.++|.+|+..|+|..
T Consensus 6 V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 6 VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp EESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred EeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 67999999 789999999932211 113467889999999999999999999998843
No 295
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=3e-11 Score=74.90 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=45.4
Q ss_pred cccCCCCCCHHHHHhhccc---ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~---~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|.. +..+.-..++.++|||||+|.+.++|++|+..|++.
T Consensus 27 V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 27 VGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 6799999999999999993 222333345568999999999999999999999884
No 296
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.3e-11 Score=74.69 Aligned_cols=51 Identities=35% Similarity=0.499 Sum_probs=46.3
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHH
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIE 52 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 52 (155)
|.|||.++++++|+++|. .+.++.+..++.++|||||+|.+.++|++|+..
T Consensus 20 v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 20 VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp EESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred EEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 679999999999999999 566777777889999999999999999999984
No 297
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.21 E-value=2.2e-11 Score=77.28 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=52.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++++++|+++|+ .+.++.+. ++.++|||||+|.+.++|++|+..+++... ..+.|.|
T Consensus 40 V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 108 (124)
T 2kt5_A 40 VSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMDI 108 (124)
T ss_dssp EESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 679999999999999999 45666666 788999999999999999999999998432 3455555
No 298
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.21 E-value=1.4e-11 Score=79.53 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=59.3
Q ss_pred cccCCCCCCHHHHHhhccc---------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCC
Q 038175 2 GYCQVSDITNSILQETFSR---------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDS 72 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~---------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~ 72 (155)
|.|||+++|+++|+++|+. +.++.+.. +.++|||||+|.+.++|++|+. +++.. ...+.|.|.-
T Consensus 49 VgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~--l~gr~i~V~~--- 121 (136)
T 2hgl_A 49 LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES--MGHRYIEVFK--- 121 (136)
T ss_dssp EESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE--SSSSEEEEEE---
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE--ECCEEEEEEE---
Confidence 6899999999999999992 34566765 8999999999999999999998 87733 3456666632
Q ss_pred CCCHHHHHHHhhccC
Q 038175 73 NVSDKDLRELFSHFG 87 (155)
Q Consensus 73 ~~~~~~l~~~f~~~g 87 (155)
.+..++.......|
T Consensus 122 -a~~~e~~~~~~~~~ 135 (136)
T 2hgl_A 122 -SHRTEMDWVLKHSG 135 (136)
T ss_dssp -CCHHHHHHHHTTSC
T ss_pred -CChHHHHHHHhhcC
Confidence 24556666555543
No 299
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=1.3e-11 Score=76.95 Aligned_cols=64 Identities=17% Similarity=0.069 Sum_probs=50.7
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|..++.+.......++|||||+|.+.++|++|+..|++.... .+.|.|
T Consensus 15 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V 78 (111)
T 1whx_A 15 AKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFH--HVPLYL 78 (111)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSS--SSBCEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEEC--CeEEEE
Confidence 6799999999999999995544444333457899999999999999999999985432 444544
No 300
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.21 E-value=2.5e-11 Score=72.91 Aligned_cols=54 Identities=30% Similarity=0.431 Sum_probs=46.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++++++|+++|. .+.++. .++.++|||||+|.+.++|++|+..|++..
T Consensus 13 V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 72 (92)
T 2dgv_A 13 VRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMK 72 (92)
T ss_dssp ECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 344444 367889999999999999999999998843
No 301
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.21 E-value=1.2e-11 Score=81.65 Aligned_cols=64 Identities=23% Similarity=0.350 Sum_probs=52.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|.+|+..|++.. ...+.|.|
T Consensus 75 v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~--~~g~~l~v 144 (158)
T 2kn4_A 75 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV--LDGRELRV 144 (158)
T ss_dssp EESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE--SSSSEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE--ECCeEEEE
Confidence 679999999999999999 45555566678999999999999999999999999843 23455555
No 302
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.21 E-value=8.4e-12 Score=72.20 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=44.5
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHH
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIE 52 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 52 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+..
T Consensus 4 v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 4 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp ESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 679999999999999999 445555666788999999999999999999974
No 303
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=79.63 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=47.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|++.+++.
T Consensus 68 v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 128 (140)
T 2ku7_A 68 VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 128 (140)
T ss_dssp EECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred EEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 679999999999999999 3444455567889999999999999999999998873
No 304
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=75.80 Aligned_cols=55 Identities=22% Similarity=0.336 Sum_probs=45.8
Q ss_pred cccCCCCCCHHHHHhhcccce-----EEEcC-CCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFSRAK-----VTIDS-NTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~-----~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|+.++ ++.+. .++.++|||||+|.+.++|.+|+ .+++..
T Consensus 24 V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~ 84 (100)
T 2j76_E 24 LGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 84 (100)
T ss_dssp ESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 689999999999999999544 22233 36778999999999999999999 888843
No 305
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.3e-11 Score=77.34 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=49.4
Q ss_pred cccCCCCCCHHHHHhhccc-------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSR-------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~-------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|.. +.++.+. ++.++|||||+|.+.++|++|+.. ++ .....+.|.|
T Consensus 20 V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~--~~~~gr~i~v 88 (114)
T 2cpy_A 20 ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HR--KKLNGREAFV 88 (114)
T ss_dssp EESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CS--EEETTEEEEE
T ss_pred EeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CC--CccCCeEEEE
Confidence 6799999999999999992 5555666 788999999999999999999875 54 2234455555
No 306
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.20 E-value=5.4e-12 Score=81.73 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=45.4
Q ss_pred cccCCCCCCHHHHHhhcc-----cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~-----~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++||++|+++|+ ++.++.+.. +.++|||||+|.+.++|++|+ .+++.
T Consensus 51 V~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~ 108 (139)
T 2hgn_A 51 MRGLPYKATENDIYNFFSPLNPVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRA 108 (139)
T ss_dssp CCSCCTTCCHHHHHHHHCSCCCSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCC
Confidence 789999999999999999 344555554 789999999999999999999 67763
No 307
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=76.58 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=54.4
Q ss_pred cccCCCCCCHHHHHhhccc---------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCC
Q 038175 2 GYCQVSDITNSILQETFSR---------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDS 72 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~---------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~ 72 (155)
|.|||.++|+++|+++|.. +.++.+.. +.++|||||+|.+.++|++|+. +++.. ...+.|.|.
T Consensus 16 V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~--~~gr~i~V~---- 87 (107)
T 2lmi_A 16 AQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY--MGQRYVEVY---- 87 (107)
T ss_dssp EECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC--SSSSCCCCE----
T ss_pred EeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce--eCCeEEEEE----
Confidence 6799999999999999984 33444554 8899999999999999999998 77743 233444332
Q ss_pred CCCHHHHHHHhhc
Q 038175 73 NVSDKDLRELFSH 85 (155)
Q Consensus 73 ~~~~~~l~~~f~~ 85 (155)
..+..++......
T Consensus 88 ~a~~~~~~~~~~~ 100 (107)
T 2lmi_A 88 EINNEDVDALMKS 100 (107)
T ss_dssp ECCHHHHHHHHHT
T ss_pred ECCHHHHHHHHHh
Confidence 1234455555443
No 308
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=4e-11 Score=73.58 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=45.4
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. .+.++.+. ..++|||||+|.+.++|++|+..|++..
T Consensus 20 V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cq3_A 20 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTV 79 (103)
T ss_dssp EESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 34444443 3478999999999999999999998843
No 309
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.19 E-value=6e-12 Score=77.03 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=50.3
Q ss_pred cccCCCCCCHHHHHhhcccc-----eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRA-----KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~-----~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|..+ .++.+..++.++|||||+|.+.++|++|+. +++.... .+.|.|
T Consensus 22 V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~--g~~l~V 89 (101)
T 1fj7_A 22 IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF--GNEIKL 89 (101)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT--TBCCEE
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC--CcEEEE
Confidence 67999999999999999922 355555667899999999999999999998 9884433 344444
No 310
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.3e-11 Score=73.96 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=48.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|. .+.++.+. ..++|||||+|.+.++|++|+..|++... ..+.|.|
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 87 (103)
T 2cqi_A 20 VGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEVKV 87 (103)
T ss_dssp EESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred EeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeEEE
Confidence 679999999999999999 44555553 34689999999999999999999988432 2344444
No 311
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.3e-11 Score=76.30 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=47.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|++|+.. ++
T Consensus 32 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~ 90 (116)
T 1x4b_A 32 IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP 90 (116)
T ss_dssp EECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC
Confidence 679999999999999999 566777777789999999999999999999976 44
No 312
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=2.4e-11 Score=73.80 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=49.2
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+.+..+........+|||||+|.+.++|++|+..|++.......+.|.|
T Consensus 22 V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 22 VGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp EECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 679999999999999999443333222223378999999999999999999998654422444544
No 313
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.7e-11 Score=77.78 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=55.1
Q ss_pred cccCCCCCCHHHHHhhccc----------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCC
Q 038175 2 GYCQVSDITNSILQETFSR----------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALD 71 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~----------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~ 71 (155)
|.|||+++|+++|+++|+. +.++.+ .++.++|||||+|.+.++|++|+.. ++. ....+.|.|.
T Consensus 28 V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~--~l~gR~i~V~--- 100 (123)
T 2dha_A 28 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKD--LLGKRYIELF--- 100 (123)
T ss_dssp ECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTE--ESSSCEECCE---
T ss_pred EeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCC--eeCCeEEEEE---
Confidence 6799999999999999982 345566 4788999999999999999999975 552 2334444332
Q ss_pred CCCCHHHHHHHhhc
Q 038175 72 SNVSDKDLRELFSH 85 (155)
Q Consensus 72 ~~~~~~~l~~~f~~ 85 (155)
..+..+++..+..
T Consensus 101 -~a~~~e~~~~~~~ 113 (123)
T 2dha_A 101 -RSTAAEVQQVLNR 113 (123)
T ss_dssp -EECHHHHHHHHHH
T ss_pred -ECCHHHHHHHHHh
Confidence 1245566655543
No 314
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.18 E-value=1.2e-11 Score=78.70 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=42.5
Q ss_pred cccCCCCCCHHHHHhhcccceEE-------EcCCCCCCcceEEEEeCCHHHHHHHHHH
Q 038175 2 GYCQVSDITNSILQETFSRAKVT-------IDSNTGHTKGYGFVRFGDENERSRAMIE 52 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~-------~~~~~~~~~g~afv~f~~~~~a~~a~~~ 52 (155)
|.|||+++|+++|+++|+.+.++ .+.. +.++|||||+|.+.++|++|+..
T Consensus 47 VgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 47 LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp EECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH
Confidence 68999999999999999954433 3443 78899999999999999999974
No 315
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=5.3e-11 Score=70.95 Aligned_cols=74 Identities=23% Similarity=0.344 Sum_probs=62.4
Q ss_pred CCCCCcEEEEcCCCCC-----CCH----HHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEE
Q 038175 58 GKSNNATIFVGALDSN-----VSD----KDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 128 (155)
Q Consensus 58 ~~~~~~~l~v~~l~~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l 128 (155)
..++..||+|.-++.. +.. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |+|..++|+.|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 4577889989877632 222 5688999999999999999654 9999999999999998 99999999999
Q ss_pred EEEecc
Q 038175 129 RLSWGH 134 (155)
Q Consensus 129 ~v~~~~ 134 (155)
+|++..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 999853
No 316
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.3e-11 Score=76.07 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=46.7
Q ss_pred cccCCCCCCHHHHHhhcc---c---ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS---R---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~---~---~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|. . +.+..+..++.++|||||+|.+.++|++|+..|++..
T Consensus 30 V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 91 (115)
T 2cpx_A 30 LKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYK 91 (115)
T ss_dssp EECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCB
T ss_pred EeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999999999999999 2 2233333378899999999999999999999999844
No 317
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.3e-11 Score=75.40 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=48.7
Q ss_pred cccCCCCCCHHHHHhhcccc-------eEE-EcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRA-------KVT-IDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~-------~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|..+ .++ .+..++.++|||||+|.+.++|.+|+..|++.......+.|.|
T Consensus 13 V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 13 IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp EECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred EeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 67999999999999999932 222 3334568899999999999999999999862212233444544
No 318
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=77.03 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=43.2
Q ss_pred cccCCCCCCHHHHHhhccc---ce--EEEcCCC---CCCcceEEEEeCCHHHHHHHHHHhc
Q 038175 2 GYCQVSDITNSILQETFSR---AK--VTIDSNT---GHTKGYGFVRFGDENERSRAMIEMN 54 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~---~~--~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~~~ 54 (155)
|.|||.++|+++|+++|+. +. ++.+..+ +.++|||||+|.+.++|++|+..++
T Consensus 13 VgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 13 VGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp EECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred EcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 6799999999999999992 22 2223333 5789999999999999999999883
No 319
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.4e-11 Score=76.85 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=48.6
Q ss_pred ccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCC---CCCCcEEEE
Q 038175 3 YCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG---KSNNATIFV 67 (155)
Q Consensus 3 ~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~---~~~~~~l~v 67 (155)
.|||.++|+++|+++|+.++.+.+......+|||||+|.+.++|++|+..|+|... ......|||
T Consensus 33 g~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 33 GGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp CTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 35999999999999999433333222223589999999999999999999999632 233556666
No 320
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.18 E-value=4.1e-11 Score=79.76 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=50.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|. .+.++.+..++.++|||||+|.+.++|..|+..|++.
T Consensus 77 V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 137 (165)
T 1rk8_A 77 VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 137 (165)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 679999999999999999 5667777778889999999999999999999999984
No 321
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=3.2e-11 Score=75.14 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=50.9
Q ss_pred cccCCCCCCHHHHH---hhcc------cceEEEcCCCC---CCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQ---ETFS------RAKVTIDSNTG---HTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~---~~f~------~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||.++++++|+ ++|. .+.++.+..++ .++|||||+|.+.++|++|+..|++.. ...+.|.|.
T Consensus 20 V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~--~~gr~l~V~ 96 (111)
T 2cpi_A 20 VVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV--VDGRTLKAS 96 (111)
T ss_dssp EEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE--ETTEEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE--ECCEEEEEE
Confidence 67999999999999 9999 45555554433 456999999999999999999999843 235566553
No 322
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.16 E-value=1.5e-11 Score=74.48 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=45.6
Q ss_pred cccCCCCCCHHHHHhhcccceEEEc-CCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTID-SNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++|+++|+++|..+..+.. ..++.++|||||+|.+.++|.+|+..+++
T Consensus 21 V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 75 (96)
T 1fjc_A 21 AKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 75 (96)
T ss_dssp EESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTE
T ss_pred EeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 6799999999999999994433322 24678899999999999999999999887
No 323
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.16 E-value=2.6e-11 Score=84.89 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=54.0
Q ss_pred cccCCCCCCHHHHHhhccc--------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFSR--------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||.++|+++|+++|.. +.++.+..++.++|||||+|.+.++|++||..|++... ..+.|.|.
T Consensus 73 VgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V~ 145 (229)
T 3q2s_C 73 IGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVT 145 (229)
T ss_dssp EESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEEE
Confidence 6799999999999999983 34667777899999999999999999999999988543 34555553
No 324
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=3.6e-11 Score=72.92 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=47.2
Q ss_pred cccCCCCCCHHHHH----hhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQ----ETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~----~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++++++|+ ++|+ ++.++.+..+ +|||||+|.+.++|++|+..+++... ..+.|.|
T Consensus 14 V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr~l~V 84 (96)
T 2dgx_A 14 VSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI--GSKKILV 84 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 67999999999999 9998 3344444322 89999999999999999999998432 2445554
No 325
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.15 E-value=1.3e-11 Score=79.62 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=48.7
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|+ .+.++.+..++.++|||||+|.+.++|++|+..|++..
T Consensus 52 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~ 113 (135)
T 2lea_A 52 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 113 (135)
T ss_dssp EECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 679999999999999999 44455555678899999999999999999999998854
No 326
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.14 E-value=1.7e-11 Score=74.76 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=44.3
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|..+..+.......++|||||+|.+.++|++|+..|++..
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~ 75 (99)
T 2cpj_A 20 VGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 75 (99)
T ss_dssp EESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCC
T ss_pred EeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 67999999999999999933222222122457999999999999999999999854
No 327
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.14 E-value=1.7e-11 Score=75.14 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=44.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHH
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMI 51 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 51 (155)
|.|||.++|+++|+++|+ .+.++.+. ++.++|||||+|.+.++|++|+.
T Consensus 14 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 14 VGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh
Confidence 679999999999999999 56777776 88899999999999999999997
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.13 E-value=1.9e-11 Score=73.02 Aligned_cols=64 Identities=9% Similarity=0.008 Sum_probs=48.2
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||.++++++|+++|+.+ .+.......++|||||+|.+.++|++|+..+++.. ...+.|.|.
T Consensus 10 V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~--~~g~~l~V~ 73 (88)
T 1wg1_A 10 VKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYS--FRGKDLIVQ 73 (88)
T ss_dssp EESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEE--ETTEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCe--ECCcEEEEE
Confidence 67999999999999999944 22211112678999999999999999999999843 234455554
No 329
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=7.5e-11 Score=73.06 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=42.0
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|..+..+........ |||||+|.+.++|++|++.|++.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~ 73 (108)
T 1x4c_A 20 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT 73 (108)
T ss_dssp EESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcC
Confidence 6799999999999999994322222111111 89999999999999999999884
No 330
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.13 E-value=1.8e-10 Score=76.14 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=50.0
Q ss_pred cccCCCCCCHHHHHhhcc---cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS---RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~---~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||..+|+++|+++|+ .+.-+.- ..+.++|||||+|.+.++|++|++.|+|.......++|.|
T Consensus 51 VgNL~~~vted~L~~~Fs~fG~V~~V~i-~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 51 VENLFYPVTLDVLHQIFSKFGTVLKIIT-FTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp ECSCCSCCCHHHHHHHHHHHSCEEEEEE-EESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred EeCcCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 679999999999999999 2211111 1234678999999999999999999999766555566666
No 331
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.12 E-value=2.3e-11 Score=72.25 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=44.6
Q ss_pred cccCCCCCCHHHHHhhcccc----e-------EEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSRA----K-------VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~----~-------~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|+.+ . .+.+......+|||||+|.+.++|++|+ .+++.
T Consensus 11 V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 11 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred EeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 67999999999999999955 3 3333334456899999999999999999 88874
No 332
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.72 E-value=5.8e-12 Score=79.07 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=48.2
Q ss_pred cccCCCCCCHHHHHhhcc------c--------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFS------R--------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++++++|+++|+ . +.++.+..++.++|||||+|.+.++|++|+..|++.
T Consensus 12 V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 12 VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 689999999999999999 2 455666667888999999999999999999988883
No 333
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.12 E-value=3.2e-11 Score=74.38 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=49.7
Q ss_pred cccCCCCC------CHHHHHhhcccceEEE----cCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCc-EEEEc
Q 038175 2 GYCQVSDI------TNSILQETFSRAKVTI----DSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNA-TIFVG 68 (155)
Q Consensus 2 v~nlp~~~------te~~l~~~f~~~~~~~----~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~-~l~v~ 68 (155)
|.|||.++ |+++|+++|+.++.+. ...++.++|||||+|.+.++|.+|+..|+|... .++ .|.|.
T Consensus 20 V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~--~g~~~l~V~ 95 (105)
T 2nlw_A 20 VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQHTFRVN 95 (105)
T ss_dssp EESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--STTCEEEEE
T ss_pred EeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--CCCceEEEE
Confidence 67999999 7899999999322111 134678899999999999999999999998442 244 56654
No 334
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=7.6e-11 Score=73.18 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=45.6
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|+ .+.++.+. +.++|||||+|.+.++|++|+..+++..
T Consensus 34 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~ 93 (109)
T 2err_A 34 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTV 93 (109)
T ss_dssp EESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCE
T ss_pred EECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCE
Confidence 679999999999999999 34444443 4589999999999999999999998843
No 335
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.2e-11 Score=74.46 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=44.1
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++++++|+++|+.++.+.+.....++|||||+|.+.++|.+|+..+++.
T Consensus 32 V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 32 IGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred EcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 6799999999999999994332222222257899999999999999999999873
No 336
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=70.21 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=44.9
Q ss_pred cccCCCCCCHHHHHhhccc-----ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCC
Q 038175 2 GYCQVSDITNSILQETFSR-----AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG 58 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~-----~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 58 (155)
|.|||.++|+++|+++|.. +.++. +.++|||||+|.+.++|++|+..|++...
T Consensus 24 V~nL~~~~t~~~l~~~F~~~G~v~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (97)
T 2e5j_A 24 VGNLPRDARVSDLKRALRELGSVPLRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRL 81 (97)
T ss_dssp EECCCTTCCHHHHHHHHHHTTCCCSEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCS
T ss_pred EeCCCCcCcHHHHHHHHHhcCCEEEEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEE
Confidence 6799999999999999992 33333 46789999999999999999999998543
No 337
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=1.6e-10 Score=73.68 Aligned_cols=64 Identities=9% Similarity=0.094 Sum_probs=48.7
Q ss_pred cccCCCCCCHHHHH----hhcc---cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQ----ETFS---RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~----~~f~---~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++++++|+ ++|+ .+.-+....++.++|||||+|.+.++|..|+..|+|.... ++.|.|
T Consensus 34 V~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~--gr~l~V 104 (127)
T 2a3j_A 34 ITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ--GNPLVI 104 (127)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT--TSCCEE
T ss_pred EeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC--CCEEEE
Confidence 67999999999876 5788 3322333346788999999999999999999999995433 344444
No 338
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=3.7e-11 Score=71.12 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=43.0
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHh-cC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEM-NG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~-~~ 55 (155)
|.|||.++|+++|+++|..+..+.......++|||||+|.+.++|.+|+..| ++
T Consensus 17 V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 71 (85)
T 2ytc_A 17 VGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNK 71 (85)
T ss_dssp EECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTT
T ss_pred EcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 6799999999999999994433332222235799999999999999999988 55
No 339
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=1.2e-10 Score=73.78 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=49.0
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcce-EEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGY-GFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||..+|+++|+++|+ ++.++. . .|+ |||+|.+.++|..|+..|+|.......++|.|.
T Consensus 30 V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-----~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 30 IQNPLYPITVDVLYTVCNPVGKVQRIVIFK-----R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp EESCCSCCCHHHHHHHHTTTSCEEEEEEEE-----S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred EcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-----C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 579999999999999999 233322 1 285 999999999999999999997766555677763
No 340
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.09 E-value=5.8e-11 Score=74.43 Aligned_cols=55 Identities=13% Similarity=0.098 Sum_probs=43.0
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++|+++|+++|..+..+........ |||||+|.+.++|++|++.|++..
T Consensus 21 V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~ 75 (115)
T 3beg_B 21 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTK 75 (115)
T ss_dssp EEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCB
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCE
Confidence 6799999999999999994432222211111 899999999999999999999843
No 341
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.09 E-value=1e-10 Score=78.78 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=48.4
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++++++|+++|. .+.++.+. ++.++|||||+|.+.++|++|+..+++..
T Consensus 93 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~ 153 (177)
T 2f3j_A 93 VSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVP 153 (177)
T ss_dssp EECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCB
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCE
Confidence 679999999999999999 45555565 78899999999999999999999999854
No 342
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.8e-11 Score=72.91 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=47.1
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC-CCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG-SDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|..+..+.....-.++|||||+|.+.++|++|+..+++ .. ...+.|.|
T Consensus 13 V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~~g~~l~v 77 (93)
T 2cqh_A 13 IGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE--LHGKIMEV 77 (93)
T ss_dssp EECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCE--ETTEECEE
T ss_pred EeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCee--ECCEEEEE
Confidence 679999999999999999443211111114679999999999999999999998 32 23455554
No 343
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=2.2e-10 Score=68.56 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=44.1
Q ss_pred cccCCCCCCHHH----HHhhcccce-EEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 2 GYCQVSDITNSI----LQETFSRAK-VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 2 v~nlp~~~te~~----l~~~f~~~~-~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
|.|||.++++++ |+++|+.+. .+.+. ++ |+|||.|.+.++|++|++.|+|..
T Consensus 14 V~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tg---G~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 14 VYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TG---CSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CT---TCEEEEESSHHHHHHHHHHHTTCC
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ec---CEEEEEECCHHHHHHHHHHhcCCc
Confidence 789999999988 558999883 55554 33 999999999999999999999944
No 344
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.1e-10 Score=73.85 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=51.2
Q ss_pred cccC----CCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCC----HHH----HHHHHH--HhcCCCCCCC
Q 038175 2 GYCQ----VSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGD----ENE----RSRAMI--EMNGSDGKSN 61 (155)
Q Consensus 2 v~nl----p~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~~~~~~~~~~ 61 (155)
|+|| |+.+++++|+++|+ ++.++.|+.++.++|||||+|.+ +++ |.+|+. .+++ ....
T Consensus 7 VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng--~~I~ 84 (136)
T 2j8a_A 7 VYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG--CFIM 84 (136)
T ss_dssp EEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC--EEET
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC--Ceec
Confidence 7899 99999999999999 78999999999999999999996 433 677777 3444 3445
Q ss_pred CcEEEEc
Q 038175 62 NATIFVG 68 (155)
Q Consensus 62 ~~~l~v~ 68 (155)
+++|-|.
T Consensus 85 Gr~irV~ 91 (136)
T 2j8a_A 85 GFKFEVI 91 (136)
T ss_dssp TEEEEEE
T ss_pred CcEEEEE
Confidence 5666653
No 345
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=2.8e-10 Score=68.06 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=42.7
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|..+..+..... .++||||+|.+.++|++|+..+++.
T Consensus 13 V~nlp~~~t~~~l~~~F~~~G~i~~v~~--~~g~afV~f~~~~~A~~A~~~l~g~ 65 (90)
T 2dnq_A 13 IGNLPREATEQEIRSLFEQYGKVLECDI--IKNYGFVHIEDKTAAEDAIRNLHHY 65 (90)
T ss_dssp EESCCSSCCHHHHHHHHHTSSCEEEEEE--ETTEEEEEESSHHHHHHHHHHHTTC
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEE--ECCEEEEEECCHHHHHHHHHHhcCC
Confidence 6799999999999999994433222211 1689999999999999999999984
No 346
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.06 E-value=9.2e-11 Score=71.09 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=49.0
Q ss_pred cccCCCCCCHHHHH----hhcccceE---EEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQ----ETFSRAKV---TIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~----~~f~~~~~---~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++++++|+ ++|+.++. +.-..++.++|||||+|.+.++|..|+..++|... .++.|.|
T Consensus 13 V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 83 (97)
T 1nu4_A 13 INNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDKPMRI 83 (97)
T ss_dssp EESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 67999999999999 99984332 22223456789999999999999999999998433 3455555
No 347
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.05 E-value=3.3e-10 Score=72.27 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=48.3
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcce-EEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGY-GFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||..+|+++|+++|+ ++.++. ..+|+ |||+|.+.++|+.|+..|+|.......++|.|
T Consensus 33 V~NL~~~vte~~L~~lFs~yG~V~~V~i~~-----~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 33 VENLFYPVTLDVLHQIFSKFGTVLKIITFT-----KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp EESCCSCCCHHHHHHHHTTSSCEEEEEEEE-----ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHhCcCCEEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 679999999999999999 233322 23577 99999999999999999999655444556655
No 348
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=9.3e-11 Score=72.69 Aligned_cols=55 Identities=27% Similarity=0.464 Sum_probs=42.8
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|..+..+........+|||||+|.+.++|.+|+..|++.
T Consensus 30 V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~ 84 (109)
T 1x4g_A 30 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 84 (109)
T ss_dssp EECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 6799999999999999993322221111122799999999999999999999884
No 349
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.04 E-value=7.6e-09 Score=63.00 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=72.0
Q ss_pred hcCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeE
Q 038175 53 MNGSDGKSNNATIFVGALDSNVSDKDLRELFSHF-----GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQT 127 (155)
Q Consensus 53 ~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 127 (155)
++........++|-+-+||..+++.-|+.++.++ |.+.++.+..+.+.|+|+|.+...|-+|.-.|+|.+|.|++
T Consensus 12 l~s~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 12 LASRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp HHCCCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred HhccCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3444445668889999999999999999999999 99999999999999999999999999999899999999999
Q ss_pred EEEEe
Q 038175 128 VRLSW 132 (155)
Q Consensus 128 l~v~~ 132 (155)
|++.=
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99864
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=75.61 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=49.9
Q ss_pred cccCCCCCCHHHHHhhcccceE-----------EEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAKV-----------TIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~-----------~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+.++. +....++.++|||||+|.+.++|.+|+..|++... .++.|.|
T Consensus 50 V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~V 124 (143)
T 3egn_A 50 VKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL--FGKPMVV 124 (143)
T ss_dssp EEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE--TTEECEE
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--CCcEEEE
Confidence 6799999999999999993321 22224678999999999999999999999998432 2445544
No 351
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=2e-10 Score=69.90 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=48.4
Q ss_pred cccCCCCCCHHHHHhhcccc--eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRA--KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~--~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|..+ ..+... ...+|||||+|.+.++|.+|+..|++... ..+.|.|
T Consensus 20 V~nLp~~~t~~~l~~~F~~~g~g~v~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 83 (99)
T 2cpd_A 20 VRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKVL--DGSPIEV 83 (99)
T ss_dssp EESCCTTCCHHHHHHHHHTTSTTCEEEE--EECSSEEEEEESSHHHHHHHHHHHSSEEE--TTEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCcceEEE--EEeCCeEEEEeCCHHHHHHHHHHhCCCEe--CCcEEEE
Confidence 67999999999999999965 444432 23578999999999999999999998432 2445555
No 352
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.02 E-value=5e-10 Score=69.35 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=45.7
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+.++.+..... .+|||||+|.+.++|++|+..|++... .++.|.|
T Consensus 36 V~nLp~~~t~~~L~~~F~~~G~i~~v~i--~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 97 (108)
T 2jvo_A 36 VRPFPLDVQESELNEIFGPFGPMKEVKI--LNGFAFVEFEEAESAAKAIEEVHGKSF--ANQPLEV 97 (108)
T ss_dssp ECSSCTTCCHHHHHHHHTTTSCCCEEEE--ETTEEEEECSSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred EECCCCCCCHHHHHHHHHhcCCEEEEEE--ECCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 6799999999999999993322111110 179999999999999999999998432 3444444
No 353
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.02 E-value=2.7e-10 Score=69.19 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=43.7
Q ss_pred cccCCC-CCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVS-DITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~-~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||. ++++++|+++|+.++.+.... ..+|||||+|.+.++|.+|+..+++.
T Consensus 27 V~nLp~~~~t~~~L~~~F~~~G~v~~v~--i~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 27 IGNLPLKNVSKEDLFRIFSPYGHIMQIN--IKNAFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp EESCCSSCCCHHHHHHHHGGGSCEEEEE--ECSSEEEEEESSHHHHHHHHHHHTTS
T ss_pred EeCCCcccCCHHHHHHHHHhcCCEEEEE--EeCCEEEEEECCHHHHHHHHHHcCCC
Confidence 679998 999999999999544333322 14799999999999999999999884
No 354
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.01 E-value=3.4e-10 Score=86.10 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=53.8
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|.++|. .+.++.+..++.++|||||+|.+.++|..||..|++... ....|.|
T Consensus 107 V~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~V 176 (437)
T 3pgw_S 107 VARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLV 176 (437)
T ss_pred EeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 689999999999999999 556666767888999999999999999999999998533 3445555
No 355
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.00 E-value=2.1e-10 Score=70.34 Aligned_cols=53 Identities=28% Similarity=0.432 Sum_probs=42.5
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|..+..+.... ..++||||+|.+.++|++|+..|++.
T Consensus 16 V~nl~~~~t~~~l~~~F~~~G~i~~v~--~~~~~afV~f~~~~~a~~A~~~l~g~ 68 (103)
T 2dgu_A 16 VRNLANTVTEEILEKAFSQFGKLERVK--KLKDYAFIHFDERDGAVKAMEEMNGK 68 (103)
T ss_dssp EECCCTTCCHHHHHHHHHHHSCEEEEE--ECSSCEEEEESSHHHHHHHHHHHTTE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEE--EECCEEEEEeCCHHHHHHHHHHHCCC
Confidence 679999999999999999433222221 22579999999999999999999884
No 356
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=2.7e-10 Score=68.11 Aligned_cols=53 Identities=25% Similarity=0.357 Sum_probs=42.2
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|+.+..+.... ..++||||+|.+.++|++|+..|++.
T Consensus 14 V~nlp~~~t~~~l~~~F~~~G~v~~~~--~~~~~afV~f~~~~~a~~A~~~l~g~ 66 (90)
T 2dnp_A 14 VGNVSAACTSQELRSLFERRGRVIECD--VVKDYAFVHMEKEADAKAAIAQLNGK 66 (90)
T ss_dssp EESCCTTCCHHHHHHHHHHHSCEEEEE--ECSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred EeCCCCCCCHHHHHHHHHcCCCEEEEE--EECCEEEEEECCHHHHHHHHHHhCCC
Confidence 679999999999999999433222221 12469999999999999999999983
No 357
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.98 E-value=1.9e-10 Score=71.43 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=42.6
Q ss_pred cccCCCC-CCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSD-ITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~-~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.+ +|+++|+++|..+..+..... ++|||||+|.+.++|++|+..|++.
T Consensus 32 V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~ 85 (110)
T 1wf1_A 32 IGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGR 85 (110)
T ss_dssp ECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTC
T ss_pred EeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 6799999 999999999993322221111 6799999999999999999999883
No 358
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.1e-09 Score=66.29 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=43.5
Q ss_pred cccCCC-CCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCC
Q 038175 2 GYCQVS-DITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG 58 (155)
Q Consensus 2 v~nlp~-~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 58 (155)
|.|||. ++|+++|+++|+.+..+.... .++|||||+|.+.++|+.|+..+++...
T Consensus 15 V~nlp~~~~t~~~l~~~F~~~G~v~~v~--i~~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (96)
T 2kvi_A 15 IGNLPLKNVSKEDLFRIFSPYGHIMQIN--IKNAFGFIQFDNPQSVRDAIECESQEMN 70 (96)
T ss_dssp EESSTTSCCCHHHHHHHHTTTCCCCEEE--EETTEEEEEESCHHHHHHHHHHHTCSSC
T ss_pred EeCCCcccCCHHHHHHHHHhcCCEEEEE--EeCCEEEEEECCHHHHHHHHHHcCCCee
Confidence 679998 999999999999433222211 1378999999999999999999998543
No 359
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.97 E-value=4.3e-10 Score=67.24 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=36.9
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCC-CCCCcceEEEEeCCHHHHHH
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSN-TGHTKGYGFVRFGDENERSR 48 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~ 48 (155)
|.|||.++||++|+++|+.++.+.+.. ...++|||||+|.+.++|++
T Consensus 16 V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 16 VGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH
Confidence 679999999999999999443333221 12479999999999999984
No 360
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.97 E-value=4.6e-10 Score=73.40 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=47.0
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCC-CCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSN-TGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|||.++|+++|+++|+.++.+.... ...++|||||+|.+.++|.+|+..|++... ..+.|.|
T Consensus 78 V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 142 (150)
T 2i2y_A 78 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL--CGCRVRV 142 (150)
T ss_dssp EESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCS--SSSCCEE
T ss_pred EeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 679999999999999999332221111 112689999999999999999999998543 3444444
No 361
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.97 E-value=1.7e-09 Score=75.15 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=70.9
Q ss_pred EEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEee----------CCCcEEE
Q 038175 38 VRFGDENERSRAMIEMNGSDGKSNNATIFVGALDS-----NVSDKDLRELFSHFGEILSVKIP----------VGKGCGF 102 (155)
Q Consensus 38 v~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~v~~~~~~----------~~~g~~~ 102 (155)
.-+.+.++....+..+-.... .....+.+.++.. .-.+++|++.|++||.|..+.+. +++|++|
T Consensus 101 ~G~~~~~~l~~~l~~~l~~~~-~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~f 179 (222)
T 3dxb_A 101 VGALSKGQLKEFLDANLAGSA-MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIF 179 (222)
T ss_dssp ESCCCHHHHHHHHHHHSCCSC-CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEE
T ss_pred ccccChHHHHHHHHhhccccc-cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEE
Confidence 334566667777766543222 2223333333322 23457899999999999999986 2368999
Q ss_pred EEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 103 VQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 103 v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
|+|.+.++|.+|+..|+|..+.||.|.+.|..
T Consensus 180 v~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 180 VEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp EEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred EEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 99999999999999999999999999999975
No 362
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=3.5e-10 Score=67.93 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=41.8
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
|.|||.++|+++|+++|+.+..+.... ..++||||+|.+.++|.+|+..|++.
T Consensus 15 V~nLp~~~t~~~l~~~F~~~G~v~~v~--~~~~~afV~f~~~~~a~~A~~~l~g~ 67 (92)
T 2dgt_A 15 VGNISPTCTNQELRAKFEEYGPVIECD--IVKDYAFVHMERAEDAVEAIRGLDNT 67 (92)
T ss_dssp EESCCSSCCHHHHHHHHHTTSCCCEEE--ECSSEEEEEESCHHHHHHHHHHHTTE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEE--EECCEEEEEECCHHHHHHHHHHhCCC
Confidence 679999999999999999432222211 12459999999999999999999883
No 363
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.8e-09 Score=65.05 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=41.0
Q ss_pred cccCCCCCCHHHHHhhcccc----eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFSRA----KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~----~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.|||.++|+++|+++|..+ .++.+..++. ||||+|.+.++|++|+. +++
T Consensus 13 V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g 66 (94)
T 2e5g_A 13 VSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLS-QSQ 66 (94)
T ss_dssp EECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHT-CSC
T ss_pred EECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cCC
Confidence 67999999999999999933 2344443333 99999999999999999 887
No 364
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.93 E-value=1.4e-09 Score=74.17 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=49.9
Q ss_pred cccCCCCCCHHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||.++|+++|+++|+ .+.++.+. ++.++|||||+|.+.++|.+|+..++. ...++.|.|.
T Consensus 114 V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~---~~~Gr~l~V~ 182 (193)
T 2voo_A 114 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQ---KYKETDLLIL 182 (193)
T ss_dssp EECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTC---EETTEECEEE
T ss_pred ecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCC---eECCEEEEEE
Confidence 679999999999999999 44555554 478899999999999999999976542 3445555553
No 365
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=9.6e-10 Score=66.64 Aligned_cols=62 Identities=24% Similarity=0.395 Sum_probs=46.4
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|| ++|+++|+++|..+..+.....+.++|||||+|.+.++|.+|+..|++... ..+.|.|
T Consensus 20 V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v 81 (97)
T 1x5p_A 20 VYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKV 81 (97)
T ss_dssp EECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEEEE
T ss_pred EcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 4454 899999999999544333333347889999999999999999999988432 3455555
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.85 E-value=1.9e-09 Score=79.41 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=43.8
Q ss_pred ccc--CCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYC--QVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~n--lp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.| |+.++||++|+++|++++.+.......++|||||+|.+.++|++|++.|||
T Consensus 23 VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp EETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTT
T ss_pred EEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 556 588999999999999544333332234789999999999999999999999
No 367
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.85 E-value=9.5e-09 Score=63.26 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=45.3
Q ss_pred CCHHHHHhhcc------cceEEEcCCC-CCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 9 ITNSILQETFS------RAKVTIDSNT-GHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 9 ~te~~l~~~f~------~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
-++++|++.|+ ++.++.++.+ +.++|+|||+|.+.++|.+|+..|+|..- .++.|.|.
T Consensus 25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~Gr~i~v~ 89 (105)
T 2pe8_A 25 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF--GGRVVKAC 89 (105)
T ss_dssp -CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--CCcEEEEE
Confidence 37899999999 5666666543 57899999999999999999999999543 34555553
No 368
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=1.4e-09 Score=64.72 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=36.5
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcC-CCCCCcceEEEEeCCHHHHHHH
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDS-NTGHTKGYGFVRFGDENERSRA 49 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a 49 (155)
|.|||.++|+++|+++|+.+..+... ....++|||||+|.+.++|++|
T Consensus 10 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 10 VGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 67999999999999999933222111 1123789999999999999864
No 369
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.5e-09 Score=64.56 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=45.8
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcC---CCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDS---NTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~---~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.|||.++|+++|+++|..+..+... ......+.|||+|.+.++|.+|+..|++.... .+.|.|.
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~ 87 (96)
T 2e44_A 20 IRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE--NFTLKVA 87 (96)
T ss_dssp EEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS--SCBCEEE
T ss_pred EEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEE
Confidence 67999999999999999932211111 11223344999999999999999999985433 4455553
No 370
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.77 E-value=3e-09 Score=67.17 Aligned_cols=62 Identities=24% Similarity=0.395 Sum_probs=45.4
Q ss_pred cccCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 2 GYCQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
|.|| ++|+++|+++|+.++.+.......++|||||+|.+.++|.+|+..|++... ..+.|.|
T Consensus 44 Vgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~V 105 (121)
T 2bz2_A 44 VYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKV 105 (121)
T ss_dssp EECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred EcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 4454 799999999999443332222236789999999999999999999998543 3444444
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.76 E-value=2.1e-09 Score=66.15 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=39.6
Q ss_pred cCCCCCCHHHHHhhc------------c------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 4 CQVSDITNSILQETF------------S------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 4 nlp~~~te~~l~~~f------------~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
+||.++++++|++.| + ++.++.+. .+.++|||||+|.+.++|.+|+..|+|.
T Consensus 22 ~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~ 91 (104)
T 1jmt_A 22 GLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNR 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCC
Confidence 455666777777555 5 44555443 3678999999999999999999999984
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2.7e-08 Score=60.65 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=37.0
Q ss_pred CCCCHHHHHhhcccceEEEcCC-CCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 7 SDITNSILQETFSRAKVTIDSN-TGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 7 ~~~te~~l~~~f~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
.++++++|+++|+.+..+.+.. .+.++|||||+|.+.++|..|+..+++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 5689999999999332222111 147899999999999999999987544
No 373
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.69 E-value=5.5e-09 Score=73.26 Aligned_cols=57 Identities=19% Similarity=0.077 Sum_probs=45.0
Q ss_pred cccCCCCC---------CHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCC
Q 038175 2 GYCQVSDI---------TNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDG 58 (155)
Q Consensus 2 v~nlp~~~---------te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 58 (155)
|.|||.++ +|++|+++|+.++.+.+.....++|||||+|.+.++|+.|++.|++...
T Consensus 139 VgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 139 VGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp EECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 56888887 7999999999443333322224689999999999999999999999654
No 374
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.44 E-value=2.1e-07 Score=57.14 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHHHHhhcc------cceEEEcCCC--CCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 11 NSILQETFS------RAKVTIDSNT--GHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 11 e~~l~~~f~------~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
+++|++.|+ ++.++++..+ +.++|+|||+|.+.++|.+|+..|||..- ..+.|.+
T Consensus 29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f--~GR~i~v 91 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF--ANRVVVT 91 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred HHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe--CCCEEEE
Confidence 478999998 3344444322 35789999999999999999999999432 3444444
No 375
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=5.2e-07 Score=55.90 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=38.4
Q ss_pred HHHHHhhcc------cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 11 NSILQETFS------RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 11 e~~l~~~f~------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
+++|+++|. .+ .+.+ ..++|||||+|.+.++|.+|+..|+|... ..+.|.|
T Consensus 40 e~~l~~~f~~~G~v~~v-~i~~---~~~~G~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~v 96 (112)
T 2dit_A 40 REDLRVECSKFGQIRKL-LLFD---RHPDGVASVSFRDPEEADYCIQTLDGRWF--GGRQITA 96 (112)
T ss_dssp HHHHHHHGGGTSCCSEE-EEET---TCTTCEEEEECSCHHHHHHHHHHSTTCEE--TTEECEE
T ss_pred HHHHHHHHHccCCEeEE-EEec---CCCCEEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 689999999 23 2232 34799999999999999999999998433 2444544
No 376
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.38 E-value=3.4e-07 Score=57.39 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=42.4
Q ss_pred CHHHHHhhcc------cceEEEcCC----CCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEE
Q 038175 10 TNSILQETFS------RAKVTIDSN----TGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFV 67 (155)
Q Consensus 10 te~~l~~~f~------~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v 67 (155)
-+++|++.|+ ++.++.+.. ++.++|++||+|.+.++|.+|+..|+|..- ..+.|.+
T Consensus 38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f--~GR~i~v 103 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--AGRKVVA 103 (118)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--CCcEEEE
Confidence 3688999998 556666543 345789999999999999999999999532 3445544
No 377
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.36 E-value=3e-06 Score=51.33 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCCCC-CH----HHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 60 SNNATIFVGALDSNV-SD----KDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 60 ~~~~~l~v~~l~~~~-~~----~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
....+|++.|++..+ .. ..++.+|..|+........++-.-..|.|.+.++|.+|-..||+..+.|+.++|-|++
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 346789999998754 32 5678899999998888888887789999999999999999999999999999999998
Q ss_pred CC
Q 038175 135 NP 136 (155)
Q Consensus 135 ~~ 136 (155)
+.
T Consensus 83 ~~ 84 (104)
T 1wey_A 83 TL 84 (104)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=3e-06 Score=53.16 Aligned_cols=67 Identities=13% Similarity=0.018 Sum_probs=46.1
Q ss_pred cccCCCC-CCHHHHHhhcccceEEEcCCCCCCcceEEEEeCC-HHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSD-ITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGD-ENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~-~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
|.||+.+ +++++|+++|+.+.-+...........|||+|.+ .++|..|+..++..........+-+.
T Consensus 23 v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 23 FSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp EEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred EecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 5789999 9999999999944333222112223369999999 89999999998764444444444443
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=0.0001 Score=44.45 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=63.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHF-----GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 133 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 133 (155)
..-..+|.|.|+|..+.++.|.-+|+.- |.|..+.... +-|+|+|.+...|++++++ ....|.+..|.|...
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEEC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcC
Confidence 3457899999999999999999999972 5788888775 8899999999999998874 356789999999875
Q ss_pred cCCC
Q 038175 134 HNPG 137 (155)
Q Consensus 134 ~~~~ 137 (155)
.+..
T Consensus 82 ~~~~ 85 (104)
T 2dhx_A 82 PPRA 85 (104)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5433
No 380
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.09 E-value=3.2e-06 Score=52.62 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=42.6
Q ss_pred HHHHHhhcc---cc-eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCHHHHHHHhh
Q 038175 11 NSILQETFS---RA-KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFS 84 (155)
Q Consensus 11 e~~l~~~f~---~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 84 (155)
+++|++.|+ .+ .+..... ..+|+|||+|.+.++|.+|+..|+|..- .++.|.+.- ..+......|.
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~--~~~G~~fV~f~~~e~A~~Ai~~lnG~~f--~GR~i~v~~----~~~~~y~~~fp 100 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKN--SAQGNVYVKCPSIAAAIAAVNALHGRWF--AGKMITAAY----VPLPTYHNLFP 100 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTT--CTTCCEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEE----ECHHHHHHHCG
T ss_pred HHHHHHHHhccCCEEEEEEecC--CCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEE----EcHHHHHHhCc
Confidence 457788888 22 2222222 3589999999999999999999999542 355555532 23444444444
No 381
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.86 E-value=7e-05 Score=44.67 Aligned_cols=64 Identities=20% Similarity=0.361 Sum_probs=50.0
Q ss_pred cCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 038175 54 NGSDGKSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119 (155)
Q Consensus 54 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~ 119 (155)
.|+...+....|+.-+.|..+...||.++|+.||.|. |++.. ...|||.|.+++.|..|+..+.
T Consensus 7 ~g~d~~p~r~HVf~l~FP~ewKt~DI~~lFs~fggv~-I~Wid-DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 7 GGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWID-DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSCCCCCCCSEEEEECCTTCCHHHHHHHHTTTCSCC-CEEEE-TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCeEEEEeCChhhhhHHHHHHhhccCCEE-EEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 3344555555565559999999999999999999543 55554 4789999999999999998764
No 382
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.80 E-value=0.00017 Score=44.83 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=61.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCC-eEEEEEecc
Q 038175 59 KSNNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGK-QTVRLSWGH 134 (155)
Q Consensus 59 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~~ 134 (155)
.....-|.|.+.|... ...+.+.|++||.|.............|.|.++.+|++|+.. ||..+++ -.|-|....
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 4456778888899884 567788899999999988866778999999999999999984 9999974 667777753
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.52 E-value=0.00013 Score=50.19 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=38.6
Q ss_pred CCCHHHHHhhcc------cceEEEcC----CCCCCcceEEEEeCCHHHHHHHHHHhcCCC
Q 038175 8 DITNSILQETFS------RAKVTIDS----NTGHTKGYGFVRFGDENERSRAMIEMNGSD 57 (155)
Q Consensus 8 ~~te~~l~~~f~------~~~~~~~~----~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 57 (155)
+-.+++|.+.|+ ++.++.+. .++.++|++||+|.+.++|.+|+..|+|..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce
Confidence 345678888888 44555433 334789999999999999999999999954
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.0002 Score=43.21 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=52.8
Q ss_pred CcccCCCCCCHHHHHhhccc--------ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHH----hcC------CCCCCCC
Q 038175 1 NGYCQVSDITNSILQETFSR--------AKVTIDSNTGHTKGYGFVRFGDENERSRAMIE----MNG------SDGKSNN 62 (155)
Q Consensus 1 ~v~nlp~~~te~~l~~~f~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~----~~~------~~~~~~~ 62 (155)
+|.|||.++.++.|.-+|.+ +.-+.. .+ +-|+|+|.+...|++.+.. +++ +......
T Consensus 12 ~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~~---~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~ 86 (104)
T 2dhx_A 12 EVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--LG---CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAP 86 (104)
T ss_dssp EEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--ET---TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCC
T ss_pred EEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--cC---CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCc
Confidence 48899999999999999982 222221 11 5799999999999999876 344 5556677
Q ss_pred cEEEEcCCCCCCC
Q 038175 63 ATIFVGALDSNVS 75 (155)
Q Consensus 63 ~~l~v~~l~~~~~ 75 (155)
.+|.+.+|+..++
T Consensus 87 ~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 87 ARLLLQGLPPGTS 99 (104)
T ss_dssp CCCCCCSCCCCCC
T ss_pred ceEeeecCCCCCC
Confidence 7888888888754
No 385
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.48 E-value=0.00032 Score=41.94 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=44.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 038175 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119 (155)
Q Consensus 64 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~ 119 (155)
.+++ +.|..+...||.++|++||. ..|.+.. ...|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWID-DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEE-TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 3455 99999999999999999993 4456665 4789999999999999999764
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.44 E-value=0.00099 Score=39.45 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=56.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC--------CcEEEEEecCHHHHHHHHHHhcCCeeCC-----eEEE
Q 038175 63 ATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG--------KGCGFVQFANRKDAEVALQKLQGTAIGK-----QTVR 129 (155)
Q Consensus 63 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~--------~g~~~v~f~~~~~a~~a~~~l~~~~~~g-----~~l~ 129 (155)
.+|.|.+||..++++++.+.++....+.......+ ..-|+|.|.+.+++..-...++|..+-+ ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 47889999999999999999999887666555432 3569999999999999999999998732 2334
Q ss_pred EEecc
Q 038175 130 LSWGH 134 (155)
Q Consensus 130 v~~~~ 134 (155)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 387
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.13 E-value=0.00076 Score=42.46 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=54.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEee-------------------CCCcEEEEEecCHHHHHHHHHHhcCC
Q 038175 62 NATIFVGALDSNVSDKDLRELFSHFGEILS-VKIP-------------------VGKGCGFVQFANRKDAEVALQKLQGT 121 (155)
Q Consensus 62 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~-------------------~~~g~~~v~f~~~~~a~~a~~~l~~~ 121 (155)
..-|.|-+.|..... .+-+.|++||.|.. +... .+.....|+|+++.+|++|+. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 345667788887555 45667999999866 2111 124678999999999999998 4999
Q ss_pred eeCCeEEEEEeccC
Q 038175 122 AIGKQTVRLSWGHN 135 (155)
Q Consensus 122 ~~~g~~l~v~~~~~ 135 (155)
.+.|..|-|.+.++
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888887754
No 388
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.72 E-value=0.0012 Score=50.37 Aligned_cols=55 Identities=16% Similarity=0.281 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCc-EEEEEecCHHHHHHHHH
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKG-CGFVQFANRKDAEVALQ 116 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g-~~~v~f~~~~~a~~a~~ 116 (155)
..++|+|. .|...++.+|.++|++||.|..+.+..++| |+.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 36889997 799999999999999999999999988765 79999999999887654
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.50 E-value=0.01 Score=35.36 Aligned_cols=74 Identities=9% Similarity=0.167 Sum_probs=53.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCC--------CcEEEEEecCHHHHHHHHHHhcCCeeCC-----eE
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVG--------KGCGFVQFANRKDAEVALQKLQGTAIGK-----QT 127 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~--------~g~~~v~f~~~~~a~~a~~~l~~~~~~g-----~~ 127 (155)
..-+|.|..||..++++++.+.++..-.+.......+ ..-|+|.|.+.++...-....+|..+-+ .+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4567899999999999998888876544433222221 2458999999999999999999987632 24
Q ss_pred EEEEecc
Q 038175 128 VRLSWGH 134 (155)
Q Consensus 128 l~v~~~~ 134 (155)
..|+||-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566653
No 390
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0015 Score=39.78 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=47.4
Q ss_pred cccCCCCCCHHHHHhhccc--------c-eEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 2 GYCQVSDITNSILQETFSR--------A-KVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~--------~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
++|||..+++..|+.+... + +++..+ ..+=|+|+|.+...|-+|.-.++|.... +++|.++
T Consensus 26 L~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p----DH~GAivef~d~~~AgKasLaL~G~ef~--gr~Lr~g 95 (117)
T 2l9w_A 26 LFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS----DFNGAIIIFRDSKFAAKMLMILNGSQFQ--GKVIRSG 95 (117)
T ss_dssp EECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET----TTTEEEEECSCHHHHHHHHHHHSSEEET--TEEEEEE
T ss_pred EecCCCCCCHHHHHHHHhhhhccCccceeEEEEec----CCCceEEEEccchhhHHHHhhcCCeeec--CeEEEec
Confidence 5799999999999999881 2 333332 2245999999999999999999995544 8888887
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.15 E-value=0.0099 Score=35.10 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=39.5
Q ss_pred cccCCCCCCHHHHHhhcc---cceEE---E-cCCCC-CCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFS---RAKVT---I-DSNTG-HTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~---~~~~~---~-~~~~~-~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|.+||+..||+++.+.+. +.... . +...+ .....|+|.|.+.+++......++|
T Consensus 6 IRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g 67 (91)
T 1uw4_A 6 IRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG 67 (91)
T ss_dssp EEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 578999999999999998 11111 1 11111 2345799999999999999998888
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.02 E-value=0.025 Score=33.73 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=35.3
Q ss_pred cCCCCCCHHHHHhhcc-----cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 038175 4 CQVSDITNSILQETFS-----RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEM 53 (155)
Q Consensus 4 nlp~~~te~~l~~~f~-----~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 53 (155)
..|.++.-.||.++|+ .+..+.+ -.|||.|.+++.|..|+..+
T Consensus 22 ~FP~ewKt~DI~~lFs~fggv~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 22 TFPKEWKTSDLYQLFSAFGNIQISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp ECCTTCCHHHHHHHHTTTCSCCCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred eCChhhhhHHHHHHhhccCCEEEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 4599999999999999 3344443 26999999999999999865
No 393
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.64 E-value=0.0067 Score=35.77 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 038175 12 SILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVG 68 (155)
Q Consensus 12 ~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~ 68 (155)
.+|.+.|..++.+.... --.+.+||+|.+.++|.+|+. |+|.. ...++|-|.
T Consensus 30 ~~L~~~F~~~G~Vi~vr--~~~d~~fVtF~d~~sAlaAi~-mnG~~--v~Gr~LkV~ 81 (91)
T 2dnr_A 30 DELLQQFASFGEVILIR--FVEDKMWVTFLEGSSALNVLS-LNGKE--LLNRTITIA 81 (91)
T ss_dssp HHHHHHHHTTCCEEEEE--ECSSSEEEEESSHHHHHHGGG-GTTCE--ETTEEEEEE
T ss_pred HHHHHHHHhCCCeEEEE--EecCCEEEEECChHHHHHHHh-cCCeE--eCCeEEEEE
Confidence 56777887443221110 111348999999999999998 98853 455555554
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.49 E-value=0.019 Score=34.22 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=38.1
Q ss_pred cccCCCCCCHHHHHhhcccc-eEEE------cCCCC-CCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 2 GYCQVSDITNSILQETFSRA-KVTI------DSNTG-HTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~~~-~~~~------~~~~~-~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
|..||+..||+++.+.++.. ..-+ +...+ ..-..|+|.|.+.++........+|
T Consensus 14 IRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 14 IRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp EECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred EeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 57899999999999998811 1101 11111 1234689999999999999888877
No 395
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.49 E-value=0.01 Score=35.19 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=26.6
Q ss_pred HHHHhhcc---cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCC
Q 038175 12 SILQETFS---RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGS 56 (155)
Q Consensus 12 ~~l~~~f~---~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 56 (155)
.+|.+.|. .+..++-.. .-+||+|.+.++|.+|+. |+|.
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~-----d~~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQ-----GQMLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEET-----TEEEEECSCSHHHHHHHH-GGGS
T ss_pred HHHHHHHHHCCCEEEEEEec-----CcEEEEEcChHHHHHHHh-cCCe
Confidence 45777777 232222211 129999999999999998 8873
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.01 E-value=0.033 Score=33.24 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=35.7
Q ss_pred cCCCCCCHHHHHhhccc---ceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhc
Q 038175 4 CQVSDITNSILQETFSR---AKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMN 54 (155)
Q Consensus 4 nlp~~~te~~l~~~f~~---~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 54 (155)
..|.++.-.||.++|+. +.|-+-.. -.|||.|.+++.|..|+..+.
T Consensus 12 ~FP~ewKt~Di~~lFs~fggv~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp ECCTTCCHHHHHHHTTTSEEEEEEEEET-----TEEEEEEEEECHHHHHHHHHT
T ss_pred eCChhhhhHHHHHHHhccCCEEEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 56999999999999993 23322211 279999999999999998764
No 397
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.32 E-value=0.46 Score=36.80 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=44.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~ 119 (155)
....++++ +|..+...+|.++|+.||.+. |++. +...|+|.|.+.+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~wi-ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWI-DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEEC-SSSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEE-cCCeEEEEECCHHHHHHHHHHHH
Confidence 34455555 899999999999999999643 4444 35779999999999999998875
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=86.81 E-value=0.51 Score=29.14 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=31.7
Q ss_pred cCCCCCCHHHHHhhcccceEEEcCCCCCCcceEEEEeCCHHHHHHHHHH
Q 038175 4 CQVSDITNSILQETFSRAKVTIDSNTGHTKGYGFVRFGDENERSRAMIE 52 (155)
Q Consensus 4 nlp~~~te~~l~~~f~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 52 (155)
-.|++. ...+...|+.+..+.+........+-.|.|.+..+|++|+.+
T Consensus 31 GFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k 78 (119)
T 1wwh_A 31 GFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK 78 (119)
T ss_dssp CCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT
T ss_pred CCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh
Confidence 344553 445666677554444433334557999999999999999853
No 399
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=81.53 E-value=4.9 Score=22.12 Aligned_cols=68 Identities=10% Similarity=0.235 Sum_probs=42.6
Q ss_pred EEEEcCCC-CCCCHHHHHHHhhccCC-----eEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 038175 64 TIFVGALD-SNVSDKDLRELFSHFGE-----ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGH 134 (155)
Q Consensus 64 ~l~v~~l~-~~~~~~~l~~~f~~~g~-----v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 134 (155)
++++..-- ..+...+|..++..-+. |-.+.+. ..+.||+... ..+..++..|.+..+.|+.+.++.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45553222 34777788888776544 4556665 5688888864 45677888999999999999988764
No 400
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.03 E-value=0.48 Score=28.50 Aligned_cols=65 Identities=8% Similarity=0.127 Sum_probs=41.2
Q ss_pred ccCCCCC-CH----HHHHhhcccce--EEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcC
Q 038175 3 YCQVSDI-TN----SILQETFSRAK--VTIDSNTGHTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGA 69 (155)
Q Consensus 3 ~nlp~~~-te----~~l~~~f~~~~--~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~ 69 (155)
.||+.++ +. +.++++|..+. .-... -.|-.-..|.|.+.++|.+|-..|++..-....-++|.+.
T Consensus 11 tnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~--lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 11 CVANDDVFSESETRAKFESLFRTYDKDTTFQY--FKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp ECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE--ETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ecCCHHHcCCHHHHHHHHHHHHhhCcCcceee--cCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4565544 32 45677777221 11111 1233357999999999999999999966666667777765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=64.73 E-value=22 Score=27.49 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHhhcc---cceEEEcCCCCCCcceEEEEeCCHHHHHHHHHHhcC
Q 038175 5 QVSDITNSILQETFS---RAKVTIDSNTGHTKGYGFVRFGDENERSRAMIEMNG 55 (155)
Q Consensus 5 lp~~~te~~l~~~f~---~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 55 (155)
.|..+...+|.++|+ .+.+.+- +...|||.|.+.+.|..++..+..
T Consensus 447 f~~~~~~~~i~~~fs~fg~v~V~wi-----ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 447 FPKEWKTSDLYQLFSAFGNIQISWI-----DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CCTTCCHHHHHHHGGGGCCCEEEEC-----SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEE-----cCCeEEEEECCHHHHHHHHHHHHh
Confidence 477889999999999 3333332 223699999999999999988753
No 402
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=63.41 E-value=21 Score=21.16 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=47.8
Q ss_pred CCCCCCCHHHHHHHhh-ccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 038175 69 ALDSNVSDKDLRELFS-HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGHNPGN 138 (155)
Q Consensus 69 ~l~~~~~~~~l~~~f~-~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 138 (155)
.++..+..++|+.... .||.-..++.. ..-..|-..+.++-.+|++.|+.. ...+.|+|-...++..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT--NNELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGST 90 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC--SSSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe--cceEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCCC
Confidence 4577888888887766 48887777666 234678888999999999987754 4555666666555443
No 403
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=63.34 E-value=4.4 Score=31.00 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHhhcccc----eEEEcCCCCCCcceEEEEeCCHHHHHHHHH
Q 038175 5 QVSDITNSILQETFSRA----KVTIDSNTGHTKGYGFVRFGDENERSRAMI 51 (155)
Q Consensus 5 lp~~~te~~l~~~f~~~----~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 51 (155)
.|.+.++.+|.++|+.. .+..+. ...-||.|+|.+.+++..++.
T Consensus 60 ~~~~~~~~~l~~y~~~~g~i~~~~~~~---~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 60 CPEKISENKFLKYLSQFGPINNHFFYE---SFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp ECCC---CHHHHHHGGGSCCCCEEEEC---SSSEEEEEECC---CCHHHHS
T ss_pred cCCCCCHHHHHHHHHhcCCcceEEEEc---cCCeEEEEEeCCHHHHHHHHh
Confidence 48899999999999932 222332 233699999999999987764
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=62.40 E-value=20 Score=20.76 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=44.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 038175 61 NNATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 119 (155)
Q Consensus 61 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~ 119 (155)
.++-+-+-|+|..+-..++--.....|---++... .|-+.|.|.+.++...|+..|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHHH
Confidence 45677788999988877776666666765666666 6789999999999999988774
No 405
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=50.66 E-value=34 Score=19.65 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCHHHHHHHhh
Q 038175 31 HTKGYGFVRFGDENERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFS 84 (155)
Q Consensus 31 ~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 84 (155)
..+||-||++...++...+++.+ ..-+=+|++ .++++++..++.
T Consensus 48 ~fPGYVfVe~~~~~~~~~~I~~t-------~gV~gfvg~---pl~~~Ev~~il~ 91 (92)
T 3lpe_A 48 SLKGYVLVEAETKGDVEELIKGM-------PRVRGIVPG---TIAIEEIEPLLT 91 (92)
T ss_dssp TSTTEEEEEESSHHHHHHHHTTC-------TTEEEECSS---CCCHHHHHHHHC
T ss_pred ccCCEEEEEEecchhHHHHHHCC-------CCceEeCCC---CCCHHHHHHHhC
Confidence 47899999999999888887533 333334443 678888888764
No 406
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.03 E-value=14 Score=20.04 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=13.2
Q ss_pred CCeEEEEeeCCCcEEEEEecCH
Q 038175 87 GEILSVKIPVGKGCGFVQFANR 108 (155)
Q Consensus 87 g~v~~~~~~~~~g~~~v~f~~~ 108 (155)
|+|.+| ...+..|+|.|.|.
T Consensus 28 GtV~kV--~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKV--DSAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEE--ETTTTEEEEEETTT
T ss_pred eEEEEE--ecCCcEEEEEEccC
Confidence 445444 33478899999864
No 407
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=41.36 E-value=56 Score=19.54 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=36.5
Q ss_pred CcceEEEEeCCHH-----HHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccC
Q 038175 32 TKGYGFVRFGDEN-----ERSRAMIEMNGSDGKSNNATIFVGALDSNVSDKDLRELFSHFG 87 (155)
Q Consensus 32 ~~g~afv~f~~~~-----~a~~a~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 87 (155)
.+||-||.+.-.+ ++-..+....+...-... ++-|..++++++..++..-+
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~gV~gfvg~-----g~~P~pi~~~ev~~i~~~~~ 116 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGA-----GMRPVPLSPDEVRHILEVSG 116 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTTCCCCCCS-----SSSSCBCCHHHHHHHHHHHT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCCceEEeCC-----CCEEeECCHHHHHHHHHHHh
Confidence 6899999998877 777778777663322211 45677899999988876544
No 408
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=40.76 E-value=40 Score=17.65 Aligned_cols=55 Identities=5% Similarity=0.009 Sum_probs=41.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecCHHHHHHHHHH
Q 038175 62 NATIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQK 117 (155)
Q Consensus 62 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 117 (155)
..++.|.++.=.--...+...+.. ..|..+.+....+.+.|.|.+.+....+++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 346777777776677889999999 8898888887778888888855555555554
No 409
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=38.16 E-value=18 Score=20.19 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=13.4
Q ss_pred CCeEEEEeeCCCcEEEEEecCH
Q 038175 87 GEILSVKIPVGKGCGFVQFANR 108 (155)
Q Consensus 87 g~v~~~~~~~~~g~~~v~f~~~ 108 (155)
|+|.+| ...+..|+|.|.|.
T Consensus 45 GTI~kV--~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKV--DSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEE--ETTTTEEEEEETTS
T ss_pred EEEEEe--ccCCCEEEEEEcCC
Confidence 445544 34478899999874
No 410
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=35.61 E-value=22 Score=19.32 Aligned_cols=14 Identities=21% Similarity=0.365 Sum_probs=10.6
Q ss_pred eCCCcEEEEEecCH
Q 038175 95 PVGKGCGFVQFANR 108 (155)
Q Consensus 95 ~~~~g~~~v~f~~~ 108 (155)
...++.|+|.|.+.
T Consensus 38 ~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 38 NILKQSCFIIFEDS 51 (66)
T ss_dssp ETTTTEEEEEETTT
T ss_pred ccCCcEEEEEEccC
Confidence 34479999999864
No 411
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.12 E-value=98 Score=20.22 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=31.4
Q ss_pred cEEEEcCCCC-C--------CCHHHHHHHh--hccCCeEEEEeeCC---CcEEEEEecC
Q 038175 63 ATIFVGALDS-N--------VSDKDLRELF--SHFGEILSVKIPVG---KGCGFVQFAN 107 (155)
Q Consensus 63 ~~l~v~~l~~-~--------~~~~~l~~~f--~~~g~v~~~~~~~~---~g~~~v~f~~ 107 (155)
.+..|-|+|. . .+-.+|++.| +.|.++....+... .|++.|.|..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecC
Confidence 3556677776 2 3446899977 89988776555543 4679999965
No 412
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=32.41 E-value=87 Score=19.10 Aligned_cols=80 Identities=10% Similarity=-0.017 Sum_probs=48.3
Q ss_pred eCCHHHHHHHHHHhcCCCCCCCCcEEEEcCCCCCC-CHHHHHHHhhccC-CeEEEEee--CCCcEEEEEecCHHHHHHHH
Q 038175 40 FGDENERSRAMIEMNGSDGKSNNATIFVGALDSNV-SDKDLRELFSHFG-EILSVKIP--VGKGCGFVQFANRKDAEVAL 115 (155)
Q Consensus 40 f~~~~~a~~a~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g-~v~~~~~~--~~~g~~~v~f~~~~~a~~a~ 115 (155)
..+.+.|.++++.. |-. .....+..-.+|... .-..+-..+...| .|..+... ..+..+.+.+++.+.|.+++
T Consensus 52 ~~d~~~a~~~L~~~-G~~--v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L 128 (144)
T 2f06_A 52 VSDPDKAYKALKDN-HFA--VNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVL 128 (144)
T ss_dssp ESCHHHHHHHHHHT-TCC--EEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHH
T ss_pred eCCHHHHHHHHHHc-CCe--EeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHH
Confidence 56777777777654 211 111234333566654 3456677777777 56554333 34566788999999988888
Q ss_pred HHhcCCee
Q 038175 116 QKLQGTAI 123 (155)
Q Consensus 116 ~~l~~~~~ 123 (155)
+. .|..+
T Consensus 129 ~~-~g~~v 135 (144)
T 2f06_A 129 KE-KKVDL 135 (144)
T ss_dssp HH-TTCEE
T ss_pred HH-cCCEE
Confidence 76 56543
No 413
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=30.20 E-value=9.3 Score=24.32 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=16.6
Q ss_pred HHHHHhhccCCeEEEEeeCCCcEEEEEec
Q 038175 78 DLRELFSHFGEILSVKIPVGKGCGFVQFA 106 (155)
Q Consensus 78 ~l~~~f~~~g~v~~~~~~~~~g~~~v~f~ 106 (155)
|+.+++...|.|+... ..+||+||.-.
T Consensus 3 ~~~~l~~~~G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEEE--TTTTEEEEEEE
T ss_pred cccccccceeEEEEEE--CCCCeeEEeeC
Confidence 4445566667766543 34899999876
No 414
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=28.13 E-value=65 Score=16.28 Aligned_cols=44 Identities=7% Similarity=0.185 Sum_probs=31.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeeCCCcEEEEEecC
Q 038175 64 TIFVGALDSNVSDKDLRELFSHFGEILSVKIPVGKGCGFVQFAN 107 (155)
Q Consensus 64 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~~v~f~~ 107 (155)
++.|.++.-.-....+...+.....|..+.+....+.+.|.|..
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 48 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHG 48 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECC
Confidence 45555555554566788888888788888887777788888743
No 415
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.70 E-value=11 Score=20.10 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=9.4
Q ss_pred CCcEEEEEecCH
Q 038175 97 GKGCGFVQFANR 108 (155)
Q Consensus 97 ~~g~~~v~f~~~ 108 (155)
.+..|+|.|.+.
T Consensus 34 ~~~~ClV~FeD~ 45 (63)
T 2e5q_A 34 SKQSCLVTFEDN 45 (63)
T ss_dssp TTSEEEEEETTS
T ss_pred CCCEEEEEEccC
Confidence 368899999864
No 416
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=26.64 E-value=39 Score=17.76 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=10.3
Q ss_pred eCCCcEEEEEecCH
Q 038175 95 PVGKGCGFVQFANR 108 (155)
Q Consensus 95 ~~~~g~~~v~f~~~ 108 (155)
...+..|+|.|.+.
T Consensus 28 ~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 28 DSAREVCLVQFEDD 41 (58)
T ss_dssp ETTTTEEEEEETTS
T ss_pred ecCCCEEEEEEcCC
Confidence 34467899999874
No 417
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.35 E-value=81 Score=18.68 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=25.3
Q ss_pred eEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCC
Q 038175 89 ILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGT 121 (155)
Q Consensus 89 v~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~ 121 (155)
|..+..+.+ +||.|||=.+......|+..+.+.
T Consensus 41 I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 555555544 899999999999999988766544
No 418
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.02 E-value=1e+02 Score=21.52 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=23.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEE
Q 038175 62 NATIFVGALDSNVSDKDLRELFSHFGEILSV 92 (155)
Q Consensus 62 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~ 92 (155)
...+.|+|+|+.++...|.+++.. ..+...
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 456789999999999999999977 555443
No 419
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=20.95 E-value=83 Score=19.50 Aligned_cols=42 Identities=7% Similarity=0.068 Sum_probs=27.2
Q ss_pred cccCCCCCCHHHHHhhcc----------------cceEEEcC---CCCCCcceEEEEeCCH
Q 038175 2 GYCQVSDITNSILQETFS----------------RAKVTIDS---NTGHTKGYGFVRFGDE 43 (155)
Q Consensus 2 v~nlp~~~te~~l~~~f~----------------~~~~~~~~---~~~~~~g~afv~f~~~ 43 (155)
|+.+...++++++++.+. .-..++.. ......+|-++.|.+-
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G 128 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTG 128 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTC
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCC
Confidence 567788899999999885 11122221 2234567889998764
No 420
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=20.31 E-value=1e+02 Score=16.77 Aligned_cols=15 Identities=7% Similarity=0.224 Sum_probs=9.0
Q ss_pred EeCCHHHHHHHHHHh
Q 038175 39 RFGDENERSRAMIEM 53 (155)
Q Consensus 39 ~f~~~~~a~~a~~~~ 53 (155)
.|.+.+.|++....|
T Consensus 16 aF~~~~~A~~l~~~L 30 (81)
T 1uta_A 16 SFRGAEQAETVRAQL 30 (81)
T ss_dssp EESCHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHH
Confidence 456666666665554
Done!