Query 038179
Match_columns 221
No_of_seqs 125 out of 1035
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1div_A Ribosomal protein L9; r 100.0 1.9E-48 6.5E-53 319.7 15.0 147 42-220 1-147 (149)
2 3v2d_I 50S ribosomal protein L 100.0 9.8E-48 3.3E-52 315.1 11.9 146 42-220 1-146 (148)
3 3r8s_H 50S ribosomal protein L 100.0 1.4E-47 4.7E-52 314.6 10.9 146 42-220 1-148 (149)
4 1nkw_F 50S ribosomal protein L 100.0 1.5E-46 5E-51 307.5 16.9 144 42-220 1-144 (146)
5 3bbo_J Ribosomal protein L9; l 100.0 3E-48 1E-52 331.1 1.2 158 30-220 38-196 (197)
6 2hba_A BL17, 50S ribosomal pro 99.9 6.9E-26 2.4E-30 155.6 3.3 51 42-95 1-51 (52)
7 2z1c_A Hydrogenase expression/ 25.2 27 0.00093 24.7 1.4 28 40-74 26-53 (75)
8 1dv5_A APO-DCP, APO-D-alanyl c 23.8 30 0.001 23.5 1.4 35 156-191 36-70 (80)
9 2amw_A Hypothetical protein NE 23.2 29 0.00098 23.6 1.2 34 157-191 38-71 (83)
10 1q1v_A DEK protein; winged-hel 22.8 35 0.0012 23.7 1.5 24 157-180 31-55 (70)
11 2k75_A Uncharacterized protein 20.3 32 0.0011 25.3 1.0 27 41-73 50-76 (106)
12 2lki_A Putative uncharacterize 20.3 28 0.00095 25.6 0.6 34 157-191 60-93 (105)
No 1
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=100.00 E-value=1.9e-48 Score=319.68 Aligned_cols=147 Identities=21% Similarity=0.313 Sum_probs=134.8
Q ss_pred eEEEEccCCccccCCCCCCceEEeCCceeeccccccCccccchHHHHHHHHHHHHhcCchhHHHHHHhhhhhhhhHHHHH
Q 038179 42 WNLDLLTNQPKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIRKQRRICQPVEEEKVKVIRKSEDNMSREFE 121 (221)
Q Consensus 42 mkVILled~~~V~~LGk~GdvV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~ea~ 121 (221)
|+|||++| |++||+.||+|+|+||||||||||+|+|++||++|++.++.+++.. +++..+.+++|+
T Consensus 1 MkVILl~d---V~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~-----------~~~~~~~~~~A~ 66 (149)
T 1div_A 1 MKVIFLKD---VKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKE-----------QRQAAEELANAK 66 (149)
T ss_dssp CEEEECSB---SSSBGGGTEEEECCTTHHHHTTTTTTSEEECCHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred CEEEEccc---ccccCCCCCEEEEcCCceeeeeccCCceecCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 89999999 9999999999999999999999999999999999999999877642 223456788899
Q ss_pred HHHHHhhcCcEEEEEeecccccccccCCCCCceeeeccCHHHHHHHHHhhcCCcccCCcccCCCCCccceeEEEEEEcCC
Q 038179 122 KAARRLENARLVLRRFSNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPK 201 (221)
Q Consensus 122 ~~~~kL~~~~l~~~~~~~~~~i~~~~g~~g~~klfGsVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~~G~y~V~I~L~~ 201 (221)
+++++|++..++|.++++++ | +||||||++||+++|.+++|++||++.|.||+||+++|+|+|+|+||+
T Consensus 67 ~~a~~L~~~~v~i~~k~g~~---------g--klfGSVt~~dIa~al~~~~g~~idk~~I~l~~~Ik~~G~~~v~vkLh~ 135 (149)
T 1div_A 67 KLKEQLEKLTVTIPAKAGEG---------G--RLFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHP 135 (149)
T ss_dssp HHHHHHTTCCEEEEECBCGG---------G--EEEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEET
T ss_pred HHHHHHcCCeEEEEEEeCCC---------C--cEEeecCHHHHHHHHHHhhCCeechheEECCCCccccEEEEEEEEECC
Confidence 99999999999998876544 4 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEEEEEEe
Q 038179 202 AIPLPEGKVQWTLNVKVRG 220 (221)
Q Consensus 202 ~V~~p~~~v~~~l~V~V~~ 220 (221)
+| +++++|.|+.
T Consensus 136 ~V-------~a~i~v~V~~ 147 (149)
T 1div_A 136 EV-------TATLKVHVTE 147 (149)
T ss_dssp TE-------EEEEEEEEEE
T ss_pred CC-------EEEEEEEEEe
Confidence 97 9999999975
No 2
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=100.00 E-value=9.8e-48 Score=315.15 Aligned_cols=146 Identities=28% Similarity=0.437 Sum_probs=132.8
Q ss_pred eEEEEccCCccccCCCCCCceEEeCCceeeccccccCccccchHHHHHHHHHHHHhcCchhHHHHHHhhhhhhhhHHHHH
Q 038179 42 WNLDLLTNQPKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIRKQRRICQPVEEEKVKVIRKSEDNMSREFE 121 (221)
Q Consensus 42 mkVILled~~~V~~LGk~GdvV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~ea~ 121 (221)
|+|||++| |++||+.||+|+|+||||||||||+|+|++||++|++.++.+++.. ++++.+.+++|+
T Consensus 1 MkVILl~d---V~~LG~~GdvV~Vk~GYaRNfLiP~g~A~~AT~~n~k~~e~~~~~~-----------~~~~~~~~~~A~ 66 (148)
T 3v2d_I 1 MKVILLEP---LENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQ-----------AKRLAERKAEAE 66 (148)
T ss_dssp CEEEESSC---BTTTBSTTCEEECCHHHHHHTTGGGTSEEECCHHHHHHHHHHHHTH-----------HHHHHHHHHHHH
T ss_pred CeEEEccc---cccCCCCccEEEEcCCceehhhcccCchhhcCHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 89999999 9999999999999999999999999999999999999999877642 233456778999
Q ss_pred HHHHHhhcCcEEEEEeecccccccccCCCCCceeeeccCHHHHHHHHHhhcCCcccCCcccCCCCCccceeEEEEEEcCC
Q 038179 122 KAARRLENARLVLRRFSNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPK 201 (221)
Q Consensus 122 ~~~~kL~~~~l~~~~~~~~~~i~~~~g~~g~~klfGsVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~~G~y~V~I~L~~ 201 (221)
+++++|++..++|.++++ + + +||||||++||+++|.+++|++||++.|.||+||+++|+|+|+|+||+
T Consensus 67 ~~~~~L~~~~v~i~~kag---------~--~-kLfGSVt~~dIa~al~~~~g~~idk~~I~l~~pIk~~G~~~v~v~Lh~ 134 (148)
T 3v2d_I 67 RLKEILENLTLTIPVRAG---------E--T-KIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHP 134 (148)
T ss_dssp HHHHHSSSCCEEEECCBS---------S--S-SBSSCBCHHHHHHHHTTTTCCCCCTTSSCCSSCBCSCEEEEEECCSBT
T ss_pred HHHHHHcCCEEEEEEEcC---------C--C-ccccccCHHHHHHHHHHhcCCCcchheEEcCchhhceEEEEEEEEECC
Confidence 999999999998887763 2 2 899999999999999988999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEEEEEEe
Q 038179 202 AIPLPEGKVQWTLNVKVRG 220 (221)
Q Consensus 202 ~V~~p~~~v~~~l~V~V~~ 220 (221)
+| +++++|.|+.
T Consensus 135 ~V-------~a~i~v~V~~ 146 (148)
T 3v2d_I 135 EV-------PIQLKVSVVA 146 (148)
T ss_dssp TB-------CCEEEEEEEC
T ss_pred Cc-------EEEEEEEEEe
Confidence 98 9999999874
No 3
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=100.00 E-value=1.4e-47 Score=314.60 Aligned_cols=146 Identities=21% Similarity=0.340 Sum_probs=132.3
Q ss_pred eEEEEccCCccccCCCCCCceEEeCCceeeccccccCccccchHHHHHHHHHHHHhcCchhHHHHHHhhhhhhhhHHHHH
Q 038179 42 WNLDLLTNQPKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIRKQRRICQPVEEEKVKVIRKSEDNMSREFE 121 (221)
Q Consensus 42 mkVILled~~~V~~LGk~GdvV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~ea~ 121 (221)
|+|||++| |++||+.||+|+|+||||||||||+|+|++||++|++.++.+++.. ++++.+.+++|+
T Consensus 1 MkVIL~~d---V~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~k~~e~~~~~~-----------~~~~~~~~~~A~ 66 (149)
T 3r8s_H 1 MQVILLDK---VANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAEL-----------EAKLAEVLAAAN 66 (149)
T ss_dssp CCCEESSC---CTTTCCSSCBCCCCHHHHTTTTSSSSSEECCCSHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred CeEEEecc---cccCCCCCCEEEEcCcceehhhccCCceeeCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 89999999 9999999999999999999999999999999999999999877642 223456678899
Q ss_pred HHHHHhhcC-cEEEEEeecccccccccCCCCCceeeeccCHHHHHHHHHhhcCCcccCCcccCCC-CCccceeEEEEEEc
Q 038179 122 KAARRLENA-RLVLRRFSNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPS-PLSAFGEYEVPMRL 199 (221)
Q Consensus 122 ~~~~kL~~~-~l~~~~~~~~~~i~~~~g~~g~~klfGsVT~~dI~~~l~~q~gi~Idk~~I~l~~-pIk~~G~y~V~I~L 199 (221)
+++++|++. .++|.+++ |++| +||||||++||+++|.++ |++||++.|.||+ ||+++|+|+|+|+|
T Consensus 67 ~~~~~L~~~~~v~i~~k~---------g~~g--klfGSVt~~dIa~al~~~-g~~idk~~I~l~~~pIk~~G~~~v~v~L 134 (149)
T 3r8s_H 67 ARAEKINALETVTIASKA---------GDEG--KLFGSIGTRDIADAVTAA-GVEVAKSEVRLPNGVLRTTGEHEVSFQV 134 (149)
T ss_dssp HHHHHHHTTCCEEEEECB---------CTTS--EEEEEECHHHHHHHHHTT-SCCCCTTSEECSSCCEEESEEEEEEECS
T ss_pred HHHHHhcCCcEEEEEEEc---------CCCC--ceEcccCHHHHHHHHHHc-CCceehheEEcCCccccceEEEEEEEEE
Confidence 999999997 89998876 4555 999999999999999876 9999999999996 99999999999999
Q ss_pred CCCCCCCCceEEEEEEEEEEe
Q 038179 200 PKAIPLPEGKVQWTLNVKVRG 220 (221)
Q Consensus 200 ~~~V~~p~~~v~~~l~V~V~~ 220 (221)
|++| +++++|.|+.
T Consensus 135 h~~V-------~a~i~v~V~~ 148 (149)
T 3r8s_H 135 HSEV-------FAKVIVNVVA 148 (149)
T ss_dssp SSSC-------CCCEEEEEEE
T ss_pred CCCC-------EEEEEEEEEE
Confidence 9998 9999999874
No 4
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=100.00 E-value=1.5e-46 Score=307.55 Aligned_cols=144 Identities=24% Similarity=0.402 Sum_probs=131.9
Q ss_pred eEEEEccCCccccCCCCCCceEEeCCceeeccccccCccccchHHHHHHHHHHHHhcCchhHHHHHHhhhhhhhhHHHHH
Q 038179 42 WNLDLLTNQPKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIRKQRRICQPVEEEKVKVIRKSEDNMSREFE 121 (221)
Q Consensus 42 mkVILled~~~V~~LGk~GdvV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~ea~ 121 (221)
|+|||++| ++||+.||+|+|+||||||||||+|+|++||++|++.++.+++..+ ++..+.+++|+
T Consensus 1 MkVIL~~d----~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~~-----------~~~~~~~~~A~ 65 (146)
T 1nkw_F 1 MQVILLEP----SRLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIE-----------KRQAQEKAVAE 65 (146)
T ss_pred CeEEEeec----CCCCCCCCEEEEcCcceehhcccCCceecCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 89999999 9999999999999999999999999999999999999998876521 23456778999
Q ss_pred HHHHHhhcCcEEEEEeecccccccccCCCCCceeeeccCHHHHHHHHHhhcCCcccCCcccCCCCCccceeEEEEEEcCC
Q 038179 122 KAARRLENARLVLRRFSNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPK 201 (221)
Q Consensus 122 ~~~~kL~~~~l~~~~~~~~~~i~~~~g~~g~~klfGsVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~~G~y~V~I~L~~ 201 (221)
+++++|++..++|.+++ | +| +||||||++||+++|.++ |++||++.|.||+||+++|+|+|+|+||+
T Consensus 66 ~~a~~L~~~~v~i~~k~---------g-~g--klfGSVt~~dIa~al~~~-g~~idk~~I~l~~~Ik~~G~~~v~vkLh~ 132 (146)
T 1nkw_F 66 DLASRLNGVAVELSVRA---------G-EG--KIYGAVTHQDVANSLDQL-GFDVDRRKIDMPKTVKEVGEYDIAYRAHP 132 (146)
T ss_pred HHHHHhcCCEEEEEEEc---------C-CC--ceeeccCHHHHHHHHHHc-CCeechheEECCCcccccEEEEEEEEECC
Confidence 99999999999888876 4 45 999999999999999988 99999999999999999999999999999
Q ss_pred CCCCCCceEEEEEEEEEEe
Q 038179 202 AIPLPEGKVQWTLNVKVRG 220 (221)
Q Consensus 202 ~V~~p~~~v~~~l~V~V~~ 220 (221)
+| +++++|.|+.
T Consensus 133 ~V-------~a~i~v~V~~ 144 (146)
T 1nkw_F 133 EV-------TIPMKLVVHA 144 (146)
T ss_pred CC-------EEEEEEEEEe
Confidence 98 9999999975
No 5
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3e-48 Score=331.09 Aligned_cols=158 Identities=21% Similarity=0.305 Sum_probs=131.0
Q ss_pred eeeeecceeeeeeEEEEccCCccccCCCCCCceEEeCCceeeccccccCccccchHHHHHHHHHHHHhcCchhHHHHHHh
Q 038179 30 LLFSCQGVRYRRWNLDLLTNQPKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIRKQRRICQPVEEEKVKVI 109 (221)
Q Consensus 30 ~~~~~~~~r~kkmkVILled~~~V~~LGk~GdvV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~~~~~~~e~e~~~~~ 109 (221)
|+..++++++++|+|||++| |++||+.||+|+|+||||||||||+|+|++||++|++.++.+++..
T Consensus 38 lvv~~~k~~~k~MkVILled---V~~LGk~GdvV~Vk~GYARNfLiP~glAv~AT~~nlk~~e~~~~~~----------- 103 (197)
T 3bbo_J 38 FEVVSQKKAKKLRKVILKED---VTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERI----------- 103 (197)
T ss_dssp ------------CCCCCCSC---SSSSCSSCCCSCCCSSSCCCCCTTTTCCCCCCHHHHHHHHTTTHHH-----------
T ss_pred EEEEeccccCCceEEEEccc---ccccCCCCCEEEEcCcceeehcccCCceecCCHHHHHHHHHhHHHH-----------
Confidence 88899999999999999999 9999999999999999999999999999999999999888766542
Q ss_pred hhhhhhhHHHHHHHHHHhhcC-cEEEEEeecccccccccCCCCCceeeeccCHHHHHHHHHhhcCCcccCCcccCCCCCc
Q 038179 110 RKSEDNMSREFEKAARRLENA-RLVLRRFSNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLS 188 (221)
Q Consensus 110 ~~~~~~~~~ea~~~~~kL~~~-~l~~~~~~~~~~i~~~~g~~g~~klfGsVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk 188 (221)
++++.+.+++|++++++|++. .++|.+++ |++| +||||||++||+++|.+++|++||++.|.||+ |+
T Consensus 104 e~~~~~~~~~A~~la~~L~~~~~v~i~~ka---------Ge~G--kLFGSVT~~dIa~al~~~~Gi~Idk~~I~L~~-IK 171 (197)
T 3bbo_J 104 EAEKQRVKEEAQQLAMVFQTVGAFKVKRKG---------GKGK--LIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPE-IR 171 (197)
T ss_dssp HGGGTTTTHHHHTHHHHSSSCCCCBCCCCB---------CTTS--SBSSCCSSHHHHGGGTSSSSCCCCSTTCCSCC-CS
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEEEe---------CCCC--cEecccCHHHHHHHHHHhhCCeeeeeEEEecc-cc
Confidence 233456788999999999998 58776554 5666 99999999999999998999999999999985 99
Q ss_pred cceeEEEEEEcCCCCCCCCceEEEEEEEEEEe
Q 038179 189 AFGEYEVPMRLPKAIPLPEGKVQWTLNVKVRG 220 (221)
Q Consensus 189 ~~G~y~V~I~L~~~V~~p~~~v~~~l~V~V~~ 220 (221)
++|+|+|+|+||++| +++|+|.|+.
T Consensus 172 ~lG~y~V~VkLh~eV-------~a~i~V~V~~ 196 (197)
T 3bbo_J 172 ETGEYIAELKLHPDV-------TARVKINVFA 196 (197)
T ss_dssp SSSCEEECCCCBTTB-------CCCEEEBCCC
T ss_pred ceEEEEEEEEECCCc-------EEEEEEEEEe
Confidence 999999999999998 8999998864
No 6
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=99.91 E-value=6.9e-26 Score=155.57 Aligned_cols=51 Identities=29% Similarity=0.417 Sum_probs=48.6
Q ss_pred eEEEEccCCccccCCCCCCceEEeCCceeeccccccCccccchHHHHHHHHHHH
Q 038179 42 WNLDLLTNQPKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIRKQR 95 (221)
Q Consensus 42 mkVILled~~~V~~LGk~GdvV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~ 95 (221)
|+|||++| |++||++||+|+|++|||||||||+|+|++||++|++.++.++
T Consensus 1 MkVIL~~d---V~~lG~~Gdvv~V~~GYaRN~LiP~g~A~~AT~~n~~~~~~~~ 51 (52)
T 2hba_A 1 MKVIFLKD---VKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQK 51 (52)
T ss_dssp CEEEESSC---BTTTBCTTCEEECCHHHHHHTTTTTTSEEECCHHHHHHHHHHH
T ss_pred CEEEEccc---ccccCcCCCEEEEcCCceehhhccCCceeeCCHHHHHHHHHhh
Confidence 89999999 9999999999999999999999999999999999999887654
No 7
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=25.24 E-value=27 Score=24.72 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=22.9
Q ss_pred eeeEEEEccCCccccCCCCCCceEEeCCceeeccc
Q 038179 40 RRWNLDLLTNQPKVDKLGKAGETVKVAPGYFRNHL 74 (221)
Q Consensus 40 kkmkVILled~~~V~~LGk~GdvV~Vk~GYARNfL 74 (221)
+.+.+-|+.+ + ..||.|-|-.|||.+-+
T Consensus 26 r~V~l~Lv~~---~----~vGD~VLVH~GfAi~~i 53 (75)
T 2z1c_A 26 REVRLDLMPD---T----KPGDWVIVHTGFAIEKL 53 (75)
T ss_dssp EEEECTTSTT---C----CTTCEEEEETTEEEEEE
T ss_pred EEEEEEEeCC---C----CCCCEEEEecchhhhhC
Confidence 5677778877 5 57999999999999754
No 8
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=23.77 E-value=30 Score=23.55 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=27.1
Q ss_pred eeccCHHHHHHHHHhhcCCcccCCcccCCCCCccce
Q 038179 156 RSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFG 191 (221)
Q Consensus 156 fGsVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~~G 191 (221)
.-|+..-+++-.|.+.||++|+...+... .++++|
T Consensus 36 lDSl~~velv~~lE~~fgi~i~~~~~~~~-~~~Tv~ 70 (80)
T 1dv5_A 36 LDSMGTVQLLLELQSQFGVDAPVSEFDRK-EWDTPN 70 (80)
T ss_dssp CCSHHHHHHHHHHTTTSCCCCCCSSCCTT-TTTSHH
T ss_pred cChHHHHHHHHHHHHHhCCcCCHHHcCHH-hcCCHH
Confidence 35888999999999999999998876432 365554
No 9
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=23.21 E-value=29 Score=23.61 Aligned_cols=34 Identities=6% Similarity=0.330 Sum_probs=25.9
Q ss_pred eccCHHHHHHHHHhhcCCcccCCcccCCCCCccce
Q 038179 157 SPVTKEELVAEVARQLSISIEPENLHLPSPLSAFG 191 (221)
Q Consensus 157 GsVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~~G 191 (221)
-|+..-+++-.+.++||++|+...+... .++++|
T Consensus 38 DSl~~~elv~~lE~~fgi~i~~~~l~~~-~~~Tv~ 71 (83)
T 2amw_A 38 DSMAVVNVITALEEYFDFSVDDDEISAQ-TFETLG 71 (83)
T ss_dssp THHHHHHHHHHHHHHTTCCCCTTTCCGG-GSSSHH
T ss_pred CHHHHHHHHHHHHHHhCCeeCHHhhhHH-hcCCHH
Confidence 3788889999999999999998876432 255554
No 10
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=22.78 E-value=35 Score=23.75 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=20.7
Q ss_pred eccCHHHHHHHHHhhc-CCcccCCc
Q 038179 157 SPVTKEELVAEVARQL-SISIEPEN 180 (221)
Q Consensus 157 GsVT~~dI~~~l~~q~-gi~Idk~~ 180 (221)
-.||.+.|...|.+.+ |+++..++
T Consensus 31 ~tvT~K~VR~~Le~~~pg~dLs~kK 55 (70)
T 1q1v_A 31 EEVTMKQICKKVYENYPTYDLTERK 55 (70)
T ss_dssp GGCCHHHHHHHHHHHCSSSCCSHHH
T ss_pred HHHhHHHHHHHHHHHccCCCChHHH
Confidence 4799999999999999 99887543
No 11
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=20.31 E-value=32 Score=25.26 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=20.6
Q ss_pred eeEEEEccCCccccCCCCCCceEEeCCceeecc
Q 038179 41 RWNLDLLTNQPKVDKLGKAGETVKVAPGYFRNH 73 (221)
Q Consensus 41 kmkVILled~~~V~~LGk~GdvV~Vk~GYARNf 73 (221)
.+.+.|=.+ - =..||+|.+..||++.|
T Consensus 50 ~I~~tlW~~---~---l~~Gdvv~i~ng~v~~~ 76 (106)
T 2k75_A 50 RIRISSFGK---Q---LQDSDVVRIDNARVAQF 76 (106)
T ss_dssp EEEEEEESS---C---CCTTEEEEEEEEEEEEE
T ss_pred eEEEEEEcC---c---cCCCCEEEEEeeEEeEE
Confidence 345555555 2 78999999999999876
No 12
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=20.28 E-value=28 Score=25.58 Aligned_cols=34 Identities=6% Similarity=0.330 Sum_probs=26.5
Q ss_pred eccCHHHHHHHHHhhcCCcccCCcccCCCCCccce
Q 038179 157 SPVTKEELVAEVARQLSISIEPENLHLPSPLSAFG 191 (221)
Q Consensus 157 GsVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~~G 191 (221)
-|+..-+++-+|.+.||++|+...+... .++++|
T Consensus 60 DSL~~veLi~~lE~~FgI~I~~eel~~~-~~~Tv~ 93 (105)
T 2lki_A 60 DSMAVVNVITALEEYFDFSVDDDEISAQ-TFETLG 93 (105)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCGGGCCGG-GGSBHH
T ss_pred cHHHHHHHHHHHHHHhCCCcCHHHhhHH-hcCCHH
Confidence 4788889999999999999998876432 355555
Done!